Patent Application
20100173331
The present invention relates to novel polypeptides derived from novel intramembranous endoproteolysis of Notch proteins (hereinafter also referred to collectively as “Notch”) and to biomarkers and reagents using the same. In the description of the present invention, the following abbreviations are used for cleavage sites of Notch: S1 for Site-1, S2 for Site-2, S3 for Site-3, and S4 for Site-4. As will be described later, Site-4 (S4) is a novel intramembranous cleavage site discovered by the inventors of the present invention.
Notch is a type I transmembrane protein present on a cell surface. It contains a repeated EGF-like domain in its extracellular domain and NICD (Notch Intracellular Cytoplasmic Domain), which is a transcription factor containing an ankyrin repeated domain, in its intracellular domain. It has been known that Notch plays a role in intracellular signaling relating to cell differentiation. For example, in the developmental process of a cranial nerve system, some of the cells derived from ectoderm differentiate into neuronal precursor cells (stem cells) and further into nerve cells or glial cells, during which intracellular signaling via Notch is important. The mechanism of the intracellular signaling via Notch is as follows. First, Notch is expressed as a receptor on a Notch signal-receiving cell. During the transport to the cell surface, the Notch undergoes the cleavage at the extracellular domain (S1) by a protease such as furin, and the two Notch fragments resulting from the S1 cleavage are held together through an S—S bond on the cell surface. Next, when a Notch signal-sending cell is present near the Notch signal-receiving cell, a Notch ligand (e.g., Delta, Serrate, or Lag-2, belonging to a DSL family) is expressed on the surface of the Notch signal-sending cell. Under these two conditions, the Notch ligand interacts with the Notch receptor on the cell surface, whereby sequential proteolytic events are induced to trigger signal transduction. More specifically, the Notch is cleaved at a site (S2) close to the cell surface, which triggers the cleavage at a site (S3) that is either inside the cell membrane or in close proximity to the cell membrane inside the cell. NICD, which is the intracellular domain of the Notch resulting from the S3 cleavage, is released to an intracellular space and translocates to the nucleus, where it binds to a CSL family (CPB, SuH, or Lag-1; transcription factor) to regulate the transcription of target genes. Presenilin, which is associated with Alzheimer's disease, is involved in the S3 cleavage.
As described above, Notch plays an extremely important role in intracellular signaling for cell differentiation. Moreover, recent studies have revealed that Notch is involved not only in the differentiation of a cranial nerve system as described above but also in cell tumorigenesis, apoptosis, Alzheimer's disease, etc., which causes Notch to become a focus of attention (see Okochi et al., “Biology of Alzheimer's disease and presenilin”, Bunshi Seishin Igaku, Vol. 1, No. 3, 2001; Kageyama et al., “Notch pathway in neural development”, Tanpakushitsu Kakusan Koso, Vol. 45, No. 3, 2000; and Brian et al., “A carboxy-terminal deletion mutant of Notch 1 accelerates lymphoid oncogenesis in E2A-PBX1 transgenic mice”, Blood, Vol. 96, No. 5, 2000 Sep. 1, pp 1906-1913). Therefore, the detection of Notch signal transduction is extremely important for research and diagnosis of cell differentiation, cell tumorigensis, apoptosis, Alzheimer's disease, etc., and the earlier possible establishment of the technology for detecting Notch signal transduction is being demanded.
Therefore, with the foregoing in mind, it is an object of the present invention to provide a substance that can serve as an extracellular secreted marker for detecting Notch signal transduction.
The inventors of the present invention hypothesized that, during a series of proteolytic events of Notch, a polypeptide remaining in a cell membrane is released to an extracellular space as a result of the cleavage occurring at S3, and decided to examine this hypothesis. This is because, if the polypeptide remaining in the cell membrane is released to an extracellular space, it can serve as a marker for Notch signal transduction. Through a series of studies on Notch signal transduction, the inventors of the present invention found out that a fourth cleavage occurs at a site (in the transmembrane domain) different from the S3 cleavage site and a polypeptide resulting from this fourth cleavage is released to an extracellular space. Based on this finding, the inventors arrived at the present invention.
That is, the novel polypeptide according to the present invention is a polypeptide derived from a Notch protein. In a series of proteolytic events of the Notch protein, the polypeptide is released to an extracellular space when NICD (Notch intracellular cytoplasmic domain) translocates to a nucleus as a result of the intramembranous endoproteolysis that occurs subsequent to the extracellular proteolysis. This polypeptide can be detected by using an antibody or the like, and thus can be used as a marker for detecting Notch signal transduction. Furthermore, since Notch signal transduction is involved in cell differentiation, cell tumorigensis, Alzheimer's disease, apoptosis, etc., the novel polypeptide according to the present invention also can be used as a marker for detecting them. Moreover, as will be described later, there are several types of novel polypeptide according to the present invention with their C-termini being different from each other. Hereinafter, the novel polypeptide according to the present invention is referred to also as “Notch-β (Nβ)”. Also, the above-described intramembranous endoproteolysis is not limited to that occurring in a cell membrane but includes that occurring in an organelle membrane.
Hereinafter, the present invention will be described further in detail.
A polypeptide according to the present invention is released to an extracellular space in proportion to Notch signal transduction. Besides, novel proteolysis that occurs immediately before the release of the polypeptide to the extracellular space is presenilin dependent, and inhibition of the presenilin function causes a decrease in the release of the polypeptide of the present invention.
The novel polypeptide according to the present invention is produced and released as a result of the proteolysis (S4 cleavage) of a Notch protein that occurs simultaneously with or either before or after the proteolysis of the Notch protein at a S3 cleavage site. The proteolysis (S4 cleavage) occurs on a N-terminal side with respect to the S3 cleavage site in a transmembrane domain of the Notch protein.
The novel polypeptide (Nβ) according to the present invention is a polypeptide including an amino acid sequence selected from SEQ ID NOS: 1 to 18. In these SEQ ID NOS: 1 to 18, SEQ ID NOS: 1 to 9 represent murine amino acid sequences, while SEQ ID NOS: 10 to 18 represent human amino acid sequences. In the amino acid sequences represented by the SEQ ID NOS: 1 to 18, one or several of the amino acids may be deleted, substituted, or inserted. Polypeptides represented by such amino acid sequences also are derived from Notch proteins, and are released to an extracellular space when NICD translocates to a nucleus as a result of intramembranous endoproteolysis that occurs subsequent to extracellular proteolysis in a series of proteolytic events of the Notch proteins. These polypeptides also are released to an extracellular space in proportion to a Notch signal in a presenilin-dependent manner. It is to be noted that the novel polypeptide according to the present invention may be derived from a living organism or may be synthesized artificially. The living organism is not limited to a particular type, and may be, for instance, a human, a mouse, a rat, a rabbit, a goat, a swine, a bovine, a drosophila, or a nematode. Also, the type of tissue or cell from which the novel polypeptide of the present invention is derived is not particularly limited. More specifically, somatic cells and tissues, such as nerve, marrow, and cancer cells and tissues, may be the source of the polypeptide of the present invention, regardless of whether undifferentiated or differentiated.
A biomarker according to the present invention contains the above-described polypeptide of the present invention. The biomarker of the present invention can be used for detecting Notch signal transduction, cell differentiation, tumor, apoptosis, Alzheimer's disease, or the like. The biomarker of the present invention further may contain other components, or alternatively, it may be the novel polypeptide itself (i.e., the biomarker may contain the novel polypeptide alone). This biomarker can be detected using a reagent containing an antibody that can recognize the novel polypeptide. The antibody that can recognize the novel polypeptide can be prepared by an ordinary method, and may be a monoclonal antibody or a polyclonal antibody. In addition to the antibody that can recognize the novel polypeptide, the reagent further may contain a labeled antibody against this antibody or a labeled antibody that can recognize the novel polypeptide. The labeling can be achieved, for example, by using a fluorescent substance, an enzyme (e.g., an enzyme that acts on a substrate that develops color when reacting with the enzyme), a radioactive substance, or a carrier such as agarose.
A gene according to the present invention is a gene encoding the novel polypeptide of the present invention, and may be DNA or RNA. A vector according to the present invention is a vector containing the above-described gene, and a transformant according to the present invention is a transformant transformed with the above-described vector.
Next, an example of the extracellular release of the novel polypeptide according to the present invention will be described with reference to the left region of
Next, an example of C-terminus amino acid sequences of novel polypeptides of the present invention will be described with reference to
Hereinafter, the present invention will be described by way of examples. Reagents, materials, and experimental procedures used in the respective examples are as follows.
(Reagent)
A γ-Secretase inhibitor, [(2R,4R,5S)-2-Benzyl-5-(Boc-amino)-4-hydroxy-6-phenyl-hexanoyl]-Leu-Phe-NH2, was purchased from Bachem.
(Plasmids)
cDNAs encoding Notch ΔE-M1727V (NΔE) and NICD with C-terminal 6× c-myc tag inserted in pcDNA3 hygro were prepared in the manner described in Schroeter et al. (Schroeter, E. H., Kisslinger, J. A., Kopan, R. (1998), “Notch-1 signalling requires ligand-induced proteolytic release of intracellular domain”, Nature, 393, 382-386). The cDNAs were gift from Dr. R. Kopan. N-terminally FLAG-tagged NEXT, i.e., FLAG-NEXT (F-NEXT), was prepared by 2-step site-directed mutagenesis. In the first step, F-NEXT M1727V was produced using the ExSite PCR-Based Site-Directed Mutagenesis Kit (Stratagene). NΔE was used as a template, and the following two primers 1 and 2 (SEQ ID NO: 19 and SEQ ID NO: 20) were prepared.
In the second step, F-NEXT was prepared by site-directed mutagenesis using Quick Change Site-Directed Mutagenesis Kit (Stratagene). The F-NEXT M1727V was used as a template, and the following two primers 3 and 4 (SEQ ID NO: 21 and SEQ ID NO: 22) were prepared.
Each mutant was sequenced to verify successful mutagenesis.
(Antibodies)
The polyclonal antibody (L652) is an antibody against a polypeptide with the amino acid sequence from V 1722 to G 1743 of human Notch-1 (i.e., the sequence between S2 and S3). The antibody (L652) was produced in the following manner. First, the above-described polypeptide serving as an antigen was provided. This polypeptide is characterized in that it contains a lot of hydrophobic amino acids. On this account, the antibody was produced in the same manner as that used for producing an antibody against the Alzheimer's disease amyloid β-protein. More specifically, the antibody was produced in the following manner. The polypeptide was dissolved in water directly without being conjugated with any carrier protein. After addition of the same volume of 2× phosphate buffer, the polypeptide was emulsified with adjuvant and injected into rabbits (Wild-Bode, C., Yamazaki, T., Capell, A., Leimer, U., Steiner, H., Ihara, Y., Haass, C. (1997), “Intracellular generation and accumulation of amyloid beta-peptide terminating at amino acid 42”, J Biol Chem 272, 16085-16088). A monoclonal antibody (9E10) against c-myc and a reagent (M2-agarose) in which a monoclonal antibody against FLAG is covalently bound to agarose were obtained commercially.
(Cell Cultures and Cell Lines)
Human embryonic kidney 293 (K293), N2a and COS cells were cultured in DMEM supplemented with 10% fetal bovine serum, 1% penicillin/streptomycin, and 200 μg/ml zeocin (to select for PS1 expression), and/or 100 μg/ml hygromycin (to select for NΔE and F-NEXT expression). The K293 can stably express wild-type PS1, PS1 L286V, or PS1 D385N (Okochi et al, 2000, Kulic et al, 2000, Wolfe et al., 1999). The transfection with NΔE or F-NEXT was performed by means of a product named Lipofectamine 2000 (Invitrogen).
(Pulse-Chase)
To determine NΔE N-terminal fragment (NTF: Nβ) release from NΔE expressing cells, K293 cells stably transfected with NΔE or NICD were grown to confluence in a 10 cm dish. The cells were then metabolically pulse-labeled for 2 hours with 300 μCi [3H] amino acids (tritiated amino acid mixture, Amersham) in Earle's Balanced Salt Solution supplemented with MEM Vitamine Solution (Gibco) and several cold amino acids, followed by a 6-hour chase by 10% FCS/DMEM. To examine Nβ release, cells expressing F-NEXT were, at first, starved of methinine for 40 min with methionine-free media and then pulse-labeled for 1 hour with 400 μCi [35S] amino acid mixture (Redivue Promix, Amersham) in methionine-free DMEM, followed by chasing for various time periods with the chase media containing 10% FCS/DMEM supplemented with excess cold methionine.
(Immunoprecipitation/SDS-PAGE)
At the End of the Respective Chase Periods, the Media were Collected and put on ice immediately, followed by centrifugation at 3000×g to exclude cell debris. Next, a protease inhibitor cocktail (1:1000; Sigma) and 0.025% of sodium azide were added. The thus-obtained samples were immunoprecipitated with L652 or M2-agarose (Sigma) overnight and then washed three times with RIPA buffer containing 0.1% SDS, 0.5% deoxycholic acid, and 1% TritonX-100, followed by SDS-PAGE using Tris-Tricine 10% to 20% gradient gel (Invitrogen). The cells were scraped in ice-cold PBS, and then harvested by means of 1500×g centrifugation, followed by lysation with 100 μl of 10×RIPA. 900 μl of PBS with a protease inhibitor mix (1:500; Sigma) was then added to the lysed cells. The insoluble fraction was separated by 15000×g centrifugation and the resultant supernatant was used for immunoprecipitation. The samples for immunoprecipitation were pretreated by protein A sepharose (Sigma) and immunoprecipitated with 9E10 or M2 agarose. Next, the washed protein samples were separated by 8% or Tris-Tricine SDS-PAGE. After fixation, the gel was shaken in Amplify Fluorographic Reagent (Amersham), dried, and autoradiographed.
(Immunoprecipitation/MALDI-TOF MS Analysis)
After cells stably expressing the F-NEXT and their derivatives were grown to confluence in a 20 cm dish, the culture media were replaced with fresh 10% FCS/DMEM. After the cells with the fresh conditioned media were cultured for 3 hours in a CO2 incubator, the culture media were collected and immediately put on ice and centrifuged to eliminate cell debris. After supplementation with a protease inhibitor mix (1:1000) and 0.025% sodium azide, the media were immunoprecipitated with M2-agarose for 4 hours at 4° C. The samples were then washed three times for 10 min at 4° C. with an MS wash buffer containing 0.1% n-octylglucoside, 140 mM NaCl, 10 mM Tris (pH 8.0), and 0.025% sodium azide. The samples were then washed once again with 10 mM Tris (pH 8.0) containing 0.025% sodium azide. Peptides bound to the resultant precipitates were eluted with TFA/Acetonitrile/Water (TFA:acetonitrile:water=1:20:20) saturated with α-cyano-4 hydroxy cinnamic acid. The solubilized samples were dried on a stainless plate and subjected to a MALDI-TOF MS analysis. MS peaks were calibrated using angiotensin (Sigma) and insulin β-chain (Sigma).
Cells stably expressing NΔE or F-NEXT were pulse-labeled for 1 hour with [35S] and chased for the time period indicated in
Next, the culture media were immunoprecipitated with M2-agarose and analyzed by 8% SDS-PAGE. As shown in the lower panel of
F-NEXT expressing cells were pulse-labeled with [35S] for 1 hour and chased for the time periods indicated in
The results shown in
K293 cells stably expressing NΔE or NICD were pulse-labeled with [3H] for 2 hours and chased for 6 hours. Chased media and cell lysates were immunoprecipitated with an antibody L652 against NΔE, and the thus-obtained samples were separated by Tris-Tricine SDS-PAGE. As shown in
The same media and lysates as in the above were immunoprecipitated with an anti-c-myc antibody (9E10). As shown in the lower panel of in
Culture media of cells stably expressing F-NEXT were immunoprecipitated with M2-agarose, and MW of Nβs were analyzed by means of MALDI-TOF MS according to the above-described experimental procedures. The result is shown in the large graph shown in
Cells expressing wild-type PS1 or PS1 D385N that is a PS1 dominant negative mutant obtained by artificially causing loss of presenilin function were stably transfected with F-NEXT. An hour pulse with [35S] and then a 2-hour chase were performed, and the resulting culture media and lysates were analyzed to determine an Nβ release level from the cells expressing both the PS1 derivative and F-NEXT at the same time. First, the chased media were immunoprecipitated with M2-agarose to detect Nβ release. As shown in the upper panel of
Next, cells stably expressing F-NEXT were pulse-labeled for 1 hour and chased for 2 hours with or without a γ-secretase inhibitor (L685,458) that is designed to bind the active center of presenilin. More specifically, 1 μM of L685,458 was added to the culture media 2 hours before methionine starvation. During the pulse-chase period, every medium used contained the same concentration of L685,458. The chased media were immunoprecipitated with M2-agarose to detect release. As shown in the upper panel of
Heretofore, various studies have been made on PS mutation associated with FAD, and an increase in Aβ secretion has been confirmed in every type of FAD pathogenic PS mutant. In the present example, it was confirmed that PS dependent S4 proteolysis also relates to PS mutation associated with FAD.
K293 cells expressing wild-type (wt) PS1 or PS1 mutants associated with FAD, namely, PS1 C92S, PS1 L166P, and PS1 L286V, were stably transfected with F-NEXT. Then, the culture media of the cells expressing PS1 derivatives and F-NEXT were analyzed by MALDI-TOF MS, in order to examine the change in C-termini of F-Nβs. As shown in
In order to examine the correlation between two cleavages occurring in a cell membrane, i.e., proteolysis at S4 that produces a Notch-β peptide and proteolysis at S3 that produces NICD determining signal transduction level, a mutant in which proteolysis at S3 is inhibited was prepared in the present example and it was confirmed using this mutant that there is no change in a S4 cleavage efficiency even in the case where a S3 cleavage efficiency is decreased artificially.
It has been reported that partial inhibition of S3 cleavage is caused by mutating V1744 of Notch-1 that resides on a C-terminal side with respect to a S3 cleavage site (Schroeter et al., Nature, 1998). Thus, at first, the change in a S4 cleavage activity caused by the inhibition of S3 cleavage was examined. In order to efficiently detect the products resulting from intramembranous endoproteolysis, NEXT analogues were FLAG tagged at their N-termini and myc-tagged at their C-termini. Thereafter, valine 1744 of the plasmid expressing the analogues (F-NEXT; Okochi, 2002) was mutated into glycine or leucine (hereinafter these mutants are referred to as F-NEXT V1744G and F-NEXT V1744L, respectively) (
The cell sediments were pulsed for 30 minutes, followed by IP-autoradiography with an anti-c-myc antibody (9E10). As a result, F-NEXT expression was observed. The cells were then chased for 2 hours. As a result, NICD production caused by the degradation of F-NEXT was observed, whereas NICD production was inhibited significantly in the V1744G and V1744L mutants (the upper panel of
Next, the culture media after a 2-hour chase were analyzed using an anti-FLAG antibody (M2). F-Nβs secreted from the F-NEXT V1744G mutant cells and the F-NEXT V1744L mutant cells were approximately the same level as those secreted from the wild-type F-NEXT cells (
To further support the above-described conclusions, the S3 cleavage efficiency and the S4 cleavage efficiency were calculated. The ratio of NICD to F-NEXT analogues in the cell sediments and the ratio of F-Nβs in the culture media to the F-NEXT analogues in the corresponding cell sediments were determined. As a result, it was confirmed that although the V1744G mutant and the V1744L mutant both decrease the S3 cleavage activity in contrast to the wild-type PS1, they do not affect the S4 cleavage activity (
In PS1 mutants that cause Alzheimer's disease, the change in accuracy of S4 cleavage occurs as well as a decrease in S3 cleavage activity. If the S3 cleavage is a precondition for the S4 cleavage, a decrease in S3 cleavage efficiency caused by a PS1 mutant should affect the accuracy of the S4 cleavage. Thus, in the present example, a S3 cleavage site mutant was prepared, and it was confirmed using this mutant that the accuracy of the S4 cleavage does not change even in the case where the S3 cleavage efficiency is decreased artificially.
The cause of a familial Alzheimer's disease (FAD) is considered to be that FAD pathogenic PS mutants affect the accuracy of proteolysis by PS/γ-secretase and increase the production of Aβ42, which is elongated Aβ. Similarly, the FAD pathogenic PS mutants affect the accuracy of Notch cleavage by PS/γ-secretase and increase the production of elongated F-Nβ. Moreover, it has been reported that some of the PS mutants cause a decrease in S3 cleavage efficiency. Thus, the effect of S3 mutants that cause a decrease in S3 cleavage efficiency upon the accuracy of S4 cleavage was examined. F-Nβs contained in the culture media of the cells expressing wild-type F-NEXT, F-NEXT V1744G mutant, or F-NEXT V1744L mutant were immunoprecipitated with M2 agarose and then analyzed by MALDI-TOF MS. As a result, as shown in
Based on the assumption that S4 cleavage site mutation may exhibit a similar effect to that of the above-described artificially prepared S3 point mutants, the effect of a decrease in S4 cleavage efficiency upon a S3 cleavage efficiency was examined using F-NEXT G1730-1733 mutant and F-NEXT L1730-1733 mutant prepared by mutating four alanine residues around the S4 cleavage site into glycine residues and leucine residues, respectively (
Next, analysis also was made with regard to the assumption that the S4 cleavage site mutants similarly may affect the S4 cleavage. As indicated by the triangular arrowhead in
Next, production of radiolabeled NICD from F-NEXT contained in the corresponding cell sediments was analyzed. As a result, a similar level of NICD production to that of the wild-type F-NEXT cells was observed in the G1730-1733 mutant cells, whereas NICD production was decreased in the L1730-1733 mutant cells as compared with the cells expressing wild-type F-NEXT (the upper panel of
In order to establish this result clearly, the S4 cleavage efficiency and the S3 cleavage efficiency were calculated in the same manner as in
Subsequently, C-termini of F-Nβ G1730-1733 and F-Nβ L1730-1733 were determined. The amount of F-Nβs released from F-NEXT G1730-1733 substantially was equal to that released from the cell expressing wild-type F-NEXT (
As specifically described above, a novel polypeptide according to the present invention is derived from a Notch protein. In a series of proteolytic events of the Notch protein, the polypeptide is released to an extracellular space when NICD translocates to a nucleus as a result of intramembranous endoproteolysis that occurs subsequent to extracellular proteolysis. By using the novel polypeptide as a marker, it is possible to detect Notch signal transduction. Also, it is possible to detect cell differentiation, cell tumorigensis, apoptosis, Alzheimer's disease, etc., for example.
| Number | Date | Country | Kind |
|---|---|---|---|
| 2002-210040 | Jul 2002 | JP | national |
This application is a Continuation of application Ser. No. 10/521,691, filed Aug. 31, 2005, which is a U.S. National Stage application of PCT/JP03/09059, filed Jul. 17, 2003, which applications are incorporated herein by reference.
| Number | Date | Country | |
|---|---|---|---|
| Parent | 10521591 | Oct 2005 | US |
| Child | 12650211 | US | |
| Parent | 10521691 | Aug 2005 | US |
| Child | 10521591 | US |
