The present invention applies to the therapeutic field of cancer. In particular, the invention is directed to a compound derived from an aliphatic diamine comprising at least one pyridine or pyrimidine unit, for use as an anticancer agent, to a therapeutic composition comprising said compound, to a product comprising such a compound and another active agent, as well as to such a compound.
Cancer represents one of the leading causes of death worldwide. Treatments for cancer are varied and include surgery, radiotherapy, chemotherapy, hormone therapy, immunotherapy and targeted therapy. Fundamental research data shows that the plasticity of tumour cells allows them to develop resistance mechanisms in order to escape these treatments.
In this context, faced with the relatively low efficacy of the vast majority of traditional anti-cancer drugs in the treatment of cancers that have failed after first-line treatment or not, such as T-cell lymphomas, pancreatic adeno-carcinomas and some paediatric brain tumours, research is focusing on new therapeutic strategies. Indeed, successfully overcoming the problems of resistance encountered in this type of disease represents a real public health issue and a challenge for research.
Reconfiguration of energy metabolism is one of the key steps involved in tumour development, particularly in cases of resistance to treatment. Especially, tumour cells adapt to the conditions of their microenvironment and to the selective pressure exerted by chemotherapeutic treatments by adjusting their metabolism. The development of new molecules targeting cellular metabolism thus represents a major therapeutic challenge.
Mitochondria are organelles that play a key role in cellular metabolism by centralising ATP production from numerous substrates via oxidative phosphorylation (OXPHOS). Enzymatic reactions involved in this process regulate cell proliferation, differentiation, activation and self-renewal. Numerous recent studies have demonstrated a correlation between OXPHOS activity (i.e. activation of mitochondrial metabolism) and chemoresistance and/or tumour progression. In particular, mitochondria are cellular organelles capable of integrating and relaying multiple signals and contributing not only to the production of energy as ATP but also to the synthesis of macromolecules essential for tumour proliferation. Adaptation towards increased OXPHOS activity is a characteristic often acquired during tumour progression, especially during resistance to chemotherapy.
Molecules targeting OXPHOS metabolism by various processes have been developed and are being tested in various clinical trials; for example those blocking the mitochondrial ribosome and indirectly the synthesis of respiratory chain complexes (e.g. the antibiotic tigecycline), or those directly inhibiting complex I (e.g. metformin) or complex III (e.g. antimycin A) of the respiratory chain. They have a synergistic cytotoxic effect with reference treatments. Other pharmacological approaches aimed at blocking β-oxidation of fatty acids in mitochondria or increasing oxidative stress in OXPHOS malignant cells have also been provided.
More recently, other OXPHOS inhibitors have been described. In particular, a complex I inhibitor known as “IACS-010759” is currently undergoing clinical trials, especially in haematological cancers.
In addition, international application WO2020/109506 describes compounds having the following formula:
wherein X1 and X2, which are identical or different, are NR5 or a sulphur atom, Y is a C1-C10 alkanediyl group, Ar1 and Ar2, which are identical or different, are an optionally substituted aryl group, and R5 is a hydrogen atom or a C1-C6 alkyl group, or a pharmaceutically acceptable salt and/or solvate thereof, for use in cancer treatment. These compounds are described as inhibitors of oxygen consumption rate by mitochondria, and would especially enable treatment of some cancers having an “OXPHOS” mechanism.
However, in order to meet the growing need for personalised medicine, based on the individual properties of each tumour, there is a persistent need to develop other anti-cancer agents that are effective on tumour cells, in particular those targeting the mitochondrial respiratory chain, and therefore having an inhibitory effect on the cell energy charge. In particular, there is a need to develop molecules with other physicochemical characteristics, acting on other intracellular targets compared with the limited number of OXPHOS inhibitors already developed. These new molecules should be easy to prepare, and have improved cytotoxicity properties while guaranteeing good pharmacokinetic properties such as good ADMET properties (Absorption of the molecule, Distribution in the body, Elimination including biotransformation or Metabolism, and Excretion, and Toxicity), especially in silico.
Thus, the purpose of the present invention is to overcome drawbacks of the aforementioned prior art and to provide an anti-cancer agent with good performance in terms of anti-cancer activity, which is easy to prepare and has low toxicity on non-tumour cells while guaranteeing good ADMET properties.
The purpose of the invention is achieved by the compounds that will be described below.
The first object of the present invention is a compound selected from compounds having the formula (I), pharmaceutically acceptable salts thereof, and pharmaceutically acceptable solvates thereof,
Compounds (I) of the invention are derivatives of an aliphatic diamine comprising at least one pyridine or pyrimidine unit. The inventors have discovered that such compounds exhibit significant anti-cancer activity. In addition, these compounds are easy to prepare, have low toxicity for healthy cells, and good ADMET properties, especially in silico.
By “cancer”, it is meant all malignant neoplastic formations, whatever their histological nature (adult and paediatric). There are two main categories of solid tumours: carcinomas, of epithelial origin, and sarcomas, of connective origin. Solid tumours are formed by atypical cells that are invasive or likely to disseminate, generally characterised by an autonomous capacity for growth, an imprecise delineation, a capacity to invade neighbouring tissues and vessels and a tendency to disseminate through the production of metastases. Examples include breast, prostate, lung, oesophagus, skin, bladder, stomach, liver, uterus, colon and rectum cancers. There are also pancreatic endocrine and exocrine cancers, and paediatric tumours such as rhabdomyosarcomas and Diffuse Intrinsic Pontine Gliomas (DIPG). The other category of tumours includes the various types of haematological malignancies.
The second object of the invention is a compound as defined in the first object of the invention, for targeted use in the treatment of cancers with altered metabolism, in particular in the treatment of cancers with OXPHOS metabolism.
A cancer with an OXPHOS metabolism corresponds to a cancer which includes or is constituted by cancer cells mainly relying on oxidative phosphorylation (OXPHOS) for biosynthetic and/or bioenergetic processes.
Such cancers with OXPHOS metabolism include haematological cancers, lung cancers, cervical cancers, prostate cancers, neuroendocrine tumours, glial tumours and skin and eye cancers.
According to a preferred embodiment of the invention, the compound as defined in the first object of the invention is used in the treatment of lymphomas, especially adult or paediatric B and T lymphomas; solid tumours such as sarcomas, especially paediatric sarcomas (e.g. of the rhabdomyosarcoma type); and some recurrent tumours following chemotherapy treatments.
The compound as defined in the first object of the invention has antitumour activity in one or several preclinical models.
By “lymphoma”, it is meant any tumour, usually malignant, caused by a proliferation of lymphoid tissue cells, developing in the spleen or lymph nodes, but also in many other organs or tissues.
The compound as defined in the first object of the invention thus has the potential properties of a new anti-cancer drug targeting cellular metabolism.
It acts especially as an inhibitor of the mitochondrial respiratory chain and inhibits oxygen consumption rate. It can thus be considered an OXPHOS inhibitor. It also has:
In the compound as defined in the first object of the invention, the alkyl radical may be linear or branched, and is preferably linear.
In the compound as defined in the first object of the invention, the cycloalkyl radical may be linear or branched, and is preferably linear.
For the purposes of the present invention, a halogen is selected from F, Cl, Br and I, and particularly preferred from F and Cl.
R1, R2, and R3 represent, independently of each other, a hydrogen atom, a halogen atom, an alkyl radical, a cycloalkyl radical, an aryl radical, or a group selected from —OH, —NH2, —SH, —CN (carbonitrile or cyano), —CF3, —CO2H, —CH2OH, —CH2NH2, —CHO (aldehyde), —NH—NH2 (hydrazine), an alkoxy group —OR7, a —NR8R9 group, a —SR′10 group, a —C(O)R11 group, a —CH2OR12 group, and a —CH2NR13R14 group, with R7, R8, R10, R11, R12, and R13 representing, independently of each other, an alkyl or cycloalkyl radical, and R9 and R14 represent, independently of each other, a hydrogen atom or an alkyl or cycloalkyl radical.
The alkyl radical as the R1, R2 or R3 group is preferably a C1-C5 alkyl radical, and particularly preferably a methyl, ethyl, propyl, isopropyl, butyl or tert-butyl radical.
The cycloalkyl radical as the R1, R2 or R3 group is preferably a C3-C6 cycloalkyl radical, particularly preferably a cyclopropyl, cyclobutyl, cyclopentyl or cyclohexyl radical, and more particularly preferably a cyclopropyl radical.
The aryl radical as the R1, R2 or R3 group is preferably a C5-C15 aryl radical, particularly preferably a phenyl, 2- or 3-thienyl, 2- or 3-furyl radical, and more particularly preferably a phenyl radical.
The alkyl radical as the R7, R8, R9, R10, R11, R12, R13 or R14 group is preferably a C1-C5 alkyl radical, and particularly preferably a methyl, ethyl, propyl, isopropyl, butyl or tert-butyl radical.
The cycloalkyl radical as the R7, R8, R9, R10, R11, R12, R13 or R14 group is preferably a C3-C6 cycloalkyl radical, particularly preferably a cyclopropyl, cyclobutyl, cyclopentyl or cyclohexyl radical, and more particularly preferably a cyclopropyl radical.
The —SR10 group is preferably a thiomethyl group.
The —NR8R9 group is preferably a methylamine or dimethylamine group.
The alkoxy group —OR7 is preferably a methoxy or ethoxy group.
According to a particularly preferred embodiment of the invention, R1 is a hydrogen atom, a halogen atom, an alkyl radical, a cycloalkyl radical, an alkoxy group —OR7, a —SR10 group, a —CN group, a CF3 group, a —NR8R9 group, a —NH—NH2 group, a —CO2H group or a —CHO group.
According to a particularly preferred embodiment of the invention, R2 is a hydrogen atom, a halogen atom, an alkyl radical, a cycloalkyl radical, an alkoxy group —OR7, a —SR10 group, a —CN group, a CF3 group, a —NR8R9 group, a —NH—NH2 group, a —CO2H group or a —CHO group.
According to a particularly preferred embodiment of the invention, R3 is a hydrogen atom, a halogen atom, an alkyl radical, a cycloalkyl radical, an alkoxy group —OR7, a —SR10 group, a —CN group, a CF3 group, a —NR8R9 group, a —NH—NH2 group, a —CO2H group or a —CHO group.
Advantageously, R1, R2 and R3 are hydrogen atoms.
X1 represents a nitrogen atom or a CR15 group, with R15 being a hydrogen atom, a halogen atom, an alkyl radical, a cycloalkyl radical or an aryl radical, or a group selected from —OH, —NH2, —SH, —CN, —CF3, —CO2H, —CH2OH, —CH2NH2, an alkoxy group —OR7, a —NR8R9 group, a —SR10 group, a —C(O)R11 group, a —CH2OR12 group, and a —CH2NR13R14 group.
The R7, R8, R9, R10, R11, R12, R13 and R14 groups are as defined in the invention.
According to a particularly preferred embodiment of the invention, R15 is a hydrogen atom, a halogen atom, an alkyl radical, a cycloalkyl radical, an alkoxy group —OR7, a —SR10 group, a —CN group, a —CF3 group, a —NR8R9 group, a —NH—NH2 group, a —CO2H group, or a —CHO group.
Advantageously, X1 represents a nitrogen atom or a CH group.
R4 represents a hydrogen atom, an alkyl radical, or a divalent alkylene group forming a ring with Y1 and the nitrogen atom to which R4 is attached.
The alkyl radical as the R4 group is preferably a C1-C5 alkyl radical, and particularly preferably a methyl or ethyl radical.
The divalent alkylene radical forming a ring with Y1 and the nitrogen atom to which R4 is attached as the group R4 is preferably an alkylene radical —(CH2)2— or —(CH2)3—, and particularly preferably an alkylene radical —(CH2)2—.
Preferably, R4 represents a hydrogen atom or a divalent alkylene group forming a ring with Y1 and the nitrogen atom to which R4 is attached.
R5 represents a hydrogen atom, an alkyl radical, or a divalent alkylene group forming a ring with Y2 and the nitrogen atom to which R5 is attached.
The alkyl radical as the R5 group is preferably a C1-C5 alkyl radical, and particularly preferably a methyl, ethyl, propyl or butyl radical.
The divalent alkylene radical forming a ring with Y2 and the nitrogen atom to which R2 is attached as the R2 group is preferably an alkylene radical —(CH2)2— or —(CH2)3—, and particularly preferably an alkylene radical —(CH2)2—.
Preferably, R5 represents a hydrogen atom or a divalent alkylene group forming a ring with Y2 and the nitrogen atom to which R5 is attached.
According to a particularly preferred embodiment of the invention, R4 represents a hydrogen atom or a divalent alkylene group forming a ring with Y1 and the nitrogen atom to which R4 is attached; and R5 represents a hydrogen atom or a divalent alkylene group forming a ring with Y2 and the nitrogen atom to which R5 is attached.
According to a particularly preferred embodiment of the invention, R4 and R5 are identical.
Y1 represents —CH2—, —NH— or —O— when the R4 group represents a hydrogen atom or an alkyl radical; and represents —CH— or —N— when the R4 group represents a divalent alkylene group forming a ring with Y1 and the nitrogen atom to which R4 is attached.
Preferably, Y1 represents —CH2— when the R4 group represents a hydrogen atom or an alkyl radical; and represents —N— when the R4 group represents a divalent alkylene group forming a ring with Y1 and the nitrogen atom to which R4 is attached.
Y2 represents —CH2—, —NH— or —O— when the R5 group represents a hydrogen atom or an alkyl radical; and represents —CH— or —N— when the R5 group represents a divalent alkylene group forming a ring with Y2 and the nitrogen atom to which R5 is attached.
Preferably, Y2 represents —CH2— when the R5 group represents a hydrogen atom or an alkyl radical; and represents —N— when the R5 group represents a divalent alkylene group forming a ring with Y2 and the nitrogen atom to which R5 is attached.
According to a particularly preferred embodiment of the invention, Y1 represents —CH2— when the R4 group represents a hydrogen atom or an alkyl radical; and represents —N— when the R4 group represents a divalent alkylene group forming a ring with Y1 and the nitrogen atom to which R4 is attached; and Y2 represents —CH2— when the R5 group represents a hydrogen atom or an alkyl radical; and represents —N— when the R5 group represents a divalent alkylene group forming a ring with Y2 and the nitrogen atom to which R5 is attached.
According to a particularly preferred embodiment of the invention, Y1 and Y2 are identical.
n is an integer ranging from 1 to 20, and preferably from 1 to 14.
According to a preferred embodiment of the invention:
This embodiment is particularly suitable when R6 is a group of formula (IIa).
When Y1 and Y2 represent —CH—, and R6 is a group of the formula (IIa), then n is preferably such that n≥5 and/or R1, R′1, R2, R′2, R3, and R′3 are preferably different from —NH2.
When Y1 and Y2 represent —N—, and R6 is a group of formula (IIa), then n is preferably such that n≥7.
According to a preferred embodiment of the invention, when Y1 and Y2 represent —CH—, and R6 is a group of formula (IIa), then n is such that n≥5 and/or R1, R′1, R2, R′2, R3, and R′3 are different from —NH2; and when Y1 and Y2 represent —N—, and R6 is a group of formula (IIa), then n is such that n≥7.
R6 represents one of the following two groups (IIa) and (IIb):
The alkyl radical as the R′1, R′2 or R′3 group is preferably a C1-C5 alkyl radical, and particularly preferably a methyl, ethyl, propyl, isopropyl, butyl or tert-butyl radical.
The cycloalkyl radical as the R′1, R′2 or R′3 group is preferably a C3-C6 cycloalkyl radical, and particularly preferably a cyclopropyl, cyclobutyl, cyclopentyl or cyclohexyl radical, and more particularly preferably a cyclopropyl radical.
The aryl radical as the R′1, R′2 or R′3 group is preferably a C5-C15 aryl radical, and particularly preferably a phenyl, 2- or 3-thienyl, 2- or 3-furyl radical, and more particularly preferably a phenyl radical.
The alkyl radical as the group R′7, R′8, R′9, R′10, R′11, R′12, R′13 or R′14 is preferably a C1-C5 alkyl radical, and particularly preferably a methyl, ethyl, propyl, isopropyl, butyl or tert-butyl radical.
The cycloalkyl radical as the group R′7, R′8, R′9, R′10, R′11, R′12, R′13 or R′14 is preferably a C3-C6 cycloalkyl radical, and particularly preferably a cyclopropyl, cyclobutyl, cyclopentyl or cyclohexyl radical, and more particularly preferably a cyclopropyl radical.
The —SR′10 group is preferably a thiomethyl group.
The —NR′8R′9 group is preferably a methylamine or dimethylamine group.
The alkoxy group —OR′7 is preferably a methoxy or ethoxy group.
According to a particularly preferred embodiment of the invention, R′1 is a hydrogen atom, a halogen atom, an alkyl radical, a cycloalkyl radical, an alkoxy group —OR7, a —SR10 group, a —CN group, a CF3 group, a —NR8R9 group, a —NH—NH2 group, a —CO2H group or a —CHO group.
According to a particularly preferred embodiment of the invention, R′2 is a hydrogen atom, a halogen atom, an alkyl radical, a cycloalkyl radical, an alkoxy group —OR7, a —SR10 group, a —CN group, a CF3 group, a —NR8R9 group, a —NH—NH2 group, a —CO2H group or a —CHO group.
According to a particularly preferred embodiment of the invention, R′3 is a hydrogen atom, a halogen atom, an alkyl radical, a cycloalkyl radical, an alkoxy group —OR7, a-SR10 group, a —CN group, a CF3 group, a —NR8R9 group, a —NH—NH2 group, a —CO2H group or a —CHO group.
Advantageously, R′1, R′2 and R′3 are hydrogen atoms.
X2 represents a nitrogen atom or a CR′15 group, with R′15 being a hydrogen atom, a halogen atom, an alkyl radical, a cycloalkyl radical, an aryl radical, or a group selected from —OH, NH2, —SH, —CN, —CF3, —CO2H, —CH2OH, —CH2NH2, an alkoxy group —OR′7, a —NR′8R′9 group, a —SR′10 group, a —C(O)R′11 group, a —CH2OR′12 group, and a —CH2NR′13R′14 group.
The R′7, R′8, R′9, R′10, R′11, R′12, R′13 and R′14 groups are as defined in the invention.
According to a particularly preferred embodiment of the invention, R′15 is a hydrogen atom, a halogen atom, an alkyl radical, a cycloalkyl radical, an alkoxy group —OR7, a —SR′10 group, a —CN group, a —CF3 group, a —NR8R9 group, a —NH—NH2 group, a —CO2H group or a —CHO group.
Advantageously, X2 represents a nitrogen atom or a CH group.
According to a preferred embodiment of the invention, the compound of formula (I) is selected from the following compounds:
The term “pharmaceutically acceptable” means useful for the preparation of a pharmaceutical composition and generally safe and non-toxic for pharmaceutical use.
By pharmaceutically acceptable salt or solvate of a compound, it is meant a salt or solvate which is pharmaceutically acceptable as defined above, and which possesses the pharmacological activity of said compound.
Pharmaceutically acceptable salts include:
Solvates acceptable for therapeutic use of the compounds of the invention include conventional solvates such as those formed during the last step of preparing these compounds due to the presence of solvents. Solvates related to the presence of water (these solvates are also called hydrates) or ethanol may be mentioned.
Because of their anti-cancer activity, compounds as defined in the first object of the invention are useful in therapy.
The third object of the invention is a pharmaceutical composition comprising a compound as defined in the first object of the invention and at least one suitable pharmaceutical carrier.
The suitable pharmaceutical carrier may be a pharmaceutically acceptable excipient for use in the treatment of cancer, and in particular in the treatment of cancers with altered metabolism, and preferably cancers with OXPHOS metabolism.
The pharmaceutical composition may be a solid composition or a liquid composition.
The solid composition may be in the form of tablets, capsules, powders or granules.
The tablets may comprise the compound as defined in the first object of the invention in admixture with a pharmaceutical carrier such as gelatin, starch, lactose, magnesium stearate, talc, gum arabic or the like. The resulting mixture can in particular be compressed.
The tablets may be coated with saccharose, sucrose or other suitable materials, or may be treated so that they have prolonged or delayed activity and continuously release a predetermined amount of compound.
The powders or granules may be water dispersible. They may contain the compound as defined in the first object of the invention in admixture with dispersing agents, wetting agents or suspending agents, especially with taste adjusters or sweeteners.
The capsules may comprise the compound as defined in the first object of the invention in admixture with a diluent. The capsules may be soft or hard capsules.
The liquid composition may be in the form of an aqueous suspension or solution, a syrup or an elixir.
It may especially comprise the compound as defined in the first object of the invention in a solvent such as water, optionally as well as an appropriate sweetener, taste agent and/or colourant.
The liquid composition may especially be obtained by dissolving or suspending a powder or granules as aforesaid in a liquid such as water, fruit juice, milk, etc.
The pharmaceutical composition is preferably sterile. It may be in the form of an isotonic solution (particularly in comparison with blood).
The compound as defined in the first object of the invention or the pharmaceutical composition according to the third object of the invention may thus be used in a method for the therapeutic treatment of cancer, said method comprising administering to an individual an effective amount of said compound as defined in the first object of the invention (or of a pharmaceutically acceptable salt or solvate of said compound) or administering an effective amount of said pharmaceutical composition according to the third object of the invention.
The individual is the patient requiring treatment, such as a mammal, especially humans.
The compound or pharmaceutical composition can be administered to mammals, including humans, by the nasal, enteral (e.g. oral) or parenteral (e.g. intravenous) route.
Dosage varies according to the treatment and the condition in question. Suitable unit administration forms include oral forms such as tablets, capsules, powders, granules and oral solutions or suspensions, sublingual and buccal administration forms, subcutaneous, intramuscular, intravenous, intranasal or intraocular forms and rectal administration forms.
The compound as defined in the first object of the invention can be used alone in therapy, or in combination with at least one other active agent.
The present invention thus relates to a method for treating cancer in a patient in need thereof, comprising administering a compound as defined in the first object of the invention (or a pharmaceutically acceptable salt or solvate of said compound) or a pharmaceutical composition in accordance with the third object of the invention to the patient.
Cancer is as defined in the first object of the invention.
The present invention also relates to a method of treating a cancer with altered metabolism, in particular a cancer with OXPHOS metabolism, in a patient in need thereof, comprising administering a compound as defined in the first object of the invention (or a pharmaceutically acceptable salt or solvate of said compound) or a pharmaceutical composition in accordance with the third object of the invention to the patient.
Cancer with altered metabolism, in particular cancer with OXPHOS metabolism, are as defined in the first object of the invention.
The present invention also relates to the use of a compound as defined in the first object of the invention (or of a pharmaceutically acceptable salt or solvate of said compound) or of a pharmaceutical composition in accordance with the third object of the invention, for the manufacture of a drug intended for the treatment of a cancer or of a cancer with modified metabolism, in particular of a cancer with OXPHOS metabolism, in a subject in need thereof.
The present invention also relates to the use of a compound as defined in the first object of the invention (or of a pharmaceutically acceptable salt or solvate of said compound) or of a pharmaceutical composition in accordance with the third object of the invention, for treating a cancer or a cancer with altered metabolism, in particular a cancer with OXPHOS metabolism, in a subject in need thereof.
The term “patient” refers to an animal, generally a warm-blooded animal, preferably a mammal. The term “mammal” here refers to any mammal, including humans, domestic and farm animals, as well as zoo, sports or companion animals, such as dogs, cats, cattle, horses, sheep, pigs, goats, rabbits, etc. Preferably, the mammal is a primate, and more particularly a human being.
The term “human” refers to a male or female human subject at any stage of development, including the newborn, infant, juvenile, adolescent and adult.
The fourth object of the invention is a product comprising a compound as defined in the first object of the invention and another active agent.
The compound as defined in the first object of the invention and the other active agent are then used in combination, in particular for simultaneous, separate or staggered use in therapy.
These other active agents are in particular selected from those appropriate for the treatment of cancers. They may be adjuvants for improving activity of the compounds in accordance with the invention, or other active agents known for their use in the treatment of said conditions. Such active agents are well known to the person skilled in the art, are commercially available or are described in reference works such as Le Dictionnaire Vidal, which is published and updated every year, in particular the active agents grouped under the pharmacotherapeutic families “Cancerology Haematology”.
Certain compounds as defined in the first object of the invention are novel per se and represent the fifth object of the invention: these compounds are selected from compounds having the formula (I′), pharmaceutically acceptable salts thereof and pharmaceutically acceptable solvates thereof,
Further characteristics, alternatives and advantages of the compound, of its use, or of the pharmaceutical composition according to the invention will become clearer upon reading the following examples of embodiments, given by way of illustrating and not limiting purposes of the invention.
The attached drawings illustrate the invention.
Flash column chromatography has been performed on silica gel 60 (0.063200 mm).
Nuclear magnetic resonance spectra (1H NMR and 13C NMR) have been recorded at 25° C. with a spectrometer (Bruker Avance III) (1H NMR at 400 MHz, 13C NMR at 100 MHz) using CD3OD as the reference solvent relative to residual CH3OH (δH=3.31 ppm, δC=49.00±0.01 ppm) and DMSO-d6 as the reference solvent relative to residual DMSO (δH=2.50 ppm, δC=39.52±0.06 ppm). Chemical shifts are given in ppm and coupling constants (J) in Hertz. Data for 1H NMR spectra are reported as follows: ppm chemical shift (s=singlet, d=doublet, t=triplet, q=quadruplet, dd=doublet of doublets, td=triplet of doublets, ddd=doublet of doublets of doublets, m=multiplet, coupling constants, integration).
Compound Ia has been prepared according to the steps illustrated in the following scheme:
First step: synthesis of the N′-pyrimidin-2-yldodecane-1,12-diamine derivative.
To a solution of 1 g (4.99 mmole) of 1,12-dodecanediamine in 30 mL of dioxane 0.8 equivalent (3.99 mmole; 457.2 mg) of 2-chloropyrimidine and 5 equivalents (24.95 mmole; 3.45 g) of potassium carbonate have been added. The reaction mixture has been heated under reflux of dioxane for 16 h. After cooling, the dioxane has been concentrated under reduced pressure. The residue obtained has been taken up in 50 mL of ethyl acetate, washed once with a saturated sodium chloride solution, dried over magnesium sulphate, and evaporated under reduced pressure. The derivative obtained has been purified by silica gel chromatography using as the eluent: ethyl acetate/methanol/triethylamine in a gradient (98/0/2; 60/10/10; 70/20/10; 60/30/10).
The expected compound has been obtained in 53% yield as a yellow solid.
It has the following characteristics:
Melting point=86° C.
Molar mass=C16H3ON4: 278.43 g/mol
1H NMR (CD3OD): 8.26 (d; J=4.8 Hz; 2H); 6.59 (t; J=4.9 Hz; 1H); 3.38-3.34 (m; 2H); 2.84-2.76 (m; 2H); 1.66-1.53 (m; 4H); 1.41-1.33 (m; 16H).
13C NMR (CD3OD): 162.1; 157.9 (2C); 109.6; 40.8; 40.1; 29.3; 29.3; 29.3; 29.3; 29.2; 29.1; 29.1; 29.0; 26.6; 26.3.
To a solution of 100 mg (0.36 mmol) of N′-pyrimidin-2-yldodecane-1,12-diamine as prepared in the previous step in an ethanol/triethylamine mixture (12 mm/0.1 mm), 1.05 equivalent (0.38 mmol) of 1-(4,5-dihydro-1H-imidazol-2-yl)-3,5-dimethyl-1H-pyrazole hydrobromide has been added. The reaction medium has been heated under reflux of ethanol for 3 days. After cooling, the reaction mixture has been filtered and the filtrate concentrated in vacuo. The derivative obtained has been purified by silica gel chromatography using as the eluent: dichloromethane/methanol (92/8).
The expected compound has been obtained in 40% yield as a yellow solid.
It has the following characteristics:
Melting point=90° C.
Molar mass=C19H34N6: 346.51 g/mol
1H NMR (CD3OD): 8.14 (d; J=4.9 Hz; 2H); 6.47 (t; J=4.8 Hz; 1H); 3.61 (s; 4H); 3.25-3.22 (m; 2H); 3.14-3.06 (m; 2H); 1.53-1.45 (m; 4H); 1.31-1.18 (m; 16H).
13C NMR (CD3OD): 162.1; 159.9; 157.8 (2C); 109.6; 42.6; 42.5; 40.8; 40.5; 29.3; 29.2; 29.2; 29.2; 29.1; 29.1; 28.9; 28.8; 26.6; 26.3.
Compound Ib has been prepared according to the steps illustrated in the following scheme:
To a solution of 700 mg (2.13 mmole) of 1,12-dibromododecane in 30 mL of dioxane 2 equivalents (4.26 mmole; 700.5 mg) of 2-piperazin-1-ylpyrimidine and 7 equivalents (14.94 mmole; 2.1 g) of potassium carbonate have been added. The reaction mixture has been heated under reflux of dioxane for 20 hours. After cooling, the dioxane has been concentrated under reduced pressure. The residue obtained has been taken up in 50 mL of ethyl acetate, washed once with a saturated sodium chloride solution, dried over magnesium sulphate, and evaporated under reduced pressure. The derivative obtained has been purified by silica gel chromatography using as the eluent: ethyl acetate/methanol/triethylamine (99/0.5/0.5).
The expected compound has been obtained in 64% yield as a white solid.
It has the following characteristics:
Melting point=106° C.
Molar mass=C28H46N8: 494.72 g/mol
1H NMR (CD3OD): 8.23 (d; J=4.7 Hz; 4H); 6.40 (t; J=4.7 Hz; 2H); 3.84-3.67 (m; 8H); 2.49-2.35 (m; 8H); 2.35-2.21 (m; 4H); 1.54-1.37 (m; 4H); 1.32-1.11 (m; 16H).
13C NMR (CD3OD): 161.7 (2C); 157.7 (4C); 109.8 (2C); 59.0 (2C); 53.2 (4C); 43.7 (4C); 29.6 (δC); 27.6 (2C); 26.9 (2C).
150 mg (0.30 mmol) of 2-[4-[12-(4-pyrimidin-2-ylpiperazin-1-yl)clodecyl]piperazin-1-yl]pyrimidine have been dissolved in 5-10 mL of ethanol. Hydrochloric acid gas has been bubbled through the reaction medium for 5 minutes. After stirring, the precipitate has been collected by filtration, washed with diethyl ether and dried. The expected compound has been obtained in 87% yield as a white solid.
It has the following characteristics:
Melting point=252° C.
Molar mass=C28H46N8·2HCl: 567.64 g/mol
1H NMR (DMSO-d6): 11.49 (s; 2H); 8.44 (d; J=4.8 Hz; 4H); 6.76 (t; J=4.8 Hz; 2H); 4.67 (d; J=14.1 Hz; 4H); 3.52 (d; J=12.4 Hz; 8H); 3.07-2.99 (m; 8H); 1.79-1.73 (m; 4H); 1.35-1.30 (m; 16H).
13C NMR (DMSO-d6): 161.2 (2C); 158.5 (4C); 111.7 (2C); 56.2 (2C); 50.9 (4C); 40.8 (4C); 29.3 (2C); 29.1 (2C); 28.9 (2C); 26.6 (2C); 23.4 (2C).
Compound Ic has been prepared according to the steps illustrated in the following scheme:
To a solution of 700 mg (2.13 mmole) of 1,12-dibromododecane in 30 mL of dioxane, 2 equivalents (4.26 mmole; 696.3 mg) of 1-(2-pyridyl)piperazine and 7 equivalents (14.94 mmole; 2.1 g) of potassium carbonate have been added. The reaction mixture has been heated under reflux of dioxane for 20 hours. After cooling, the dioxane has been concentrated under reduced pressure. The residue obtained has been taken up in 50 mL of ethyl acetate, washed once with a saturated sodium chloride solution, dried over magnesium sulphate, and evaporated under reduced pressure. The derivative obtained has been purified by silica gel chromatography using as the eluent: ethyl acetate/methanol/triethylamine (99/0.5/0.5).
The expected compound has been obtained in 48% yield as a white solid.
It has the following characteristics:
Melting point=100° C.
Molar mass=C30H48N6: 492.74 g/mol
1H NMR (CD3OD): 8.12 (ddd; J=4.9; 2.0; 0.9 Hz; 2H); 7.40 (ddd; J=8.9; 7.1; 2.0 Hz; 2H); 6.60-6.51 (m; 4H); 3.48 (dd; J=6.2; 4.1 Hz; 8H); 2.54-2.42 (m; 8H); 2.34-2.25 (m; 4H); 1.52-1.38 (m; 4H); 1.30-1.14 (m; 16H).
13C NMR (CD3OD): 159.6 (2C); 148.0 (2C); 137.1 (2C); 113.2 (2C); 107.0 (2C); 59.0 (2C); 53.2 (4C); 45.2 (4C); 29.6 (δC); 27.6 (2C); 26.9 (2C).
150 mg (0.30 mmol) of 1-(2-pyridyl)-4-[12-[4-(2-pyridypiperazin-1-yl]dodecyl]piperazine have been dissolved in 5-10 mL of ethanol. Hydrochloric acid gas has been bubbled through the reaction medium for 5 minutes. After stirring, the precipitate has been collected by filtration, washed with diethyl ether and dried. The expected compound has been obtained in 91% yield as a white solid.
It has the following characteristics:
Melting point=200° C.
Molar mass=C30H48N6·2HCl: 565.66 g/mol
1H NMR (DMSO-d6): 11.41 (s; 2H); 8.13 (dd; J=5.8; 1.8 Hz; 2H); 7.94 (t; 3=8.2 Hz; 2H); 7.30 (d; 3=9.0 Hz; 2H); 6.96 (t; 3=6.4 Hz; 2H); 4.48 (d; J=8.2 Hz; 4H); 3.63-3.57 (m; 8H); 3.05-3.17 (m; 8H); 1.82-1.68 (m; 4H); 1.31-1.28 (m; 16H). 13C NMR (DMSO-d6) 155.3 (2C); 142.7 (2C); 141.7 (2C); 114.4 (2C); 110.9 (2C); 56.1 (2C); 50.5 (4C); 43.2 (4C); 29.3 (2C); 29.1 (2C); 28.9 (2C); 26.6 (2C); 23.4 (2C).
4.1 Seahorse Technology Analysis of Oxygen Consumption Rate after Treatment of Human B Cell Lymphoma Cells with Compounds (Ia), (Ib) and (Ic)
The analyser known as “Seahorse” allows evaluation mitochondrial respiration in real time by measuring Oxygen Consumption Rate (OCR). The experiments have been carried out according to the supplier's recommendations (“Agilent_Seahorse XFe96”). To achieve this, 150,000 cells per well of a human B cell lymphoma line (“RL line, CVCL_1660”) have been seeded in 180 μL of Agilent_Seahorse XF RPMI medium (supplemented with pyruvate and glucose) on a dedicated Agilent_Seahorse 96-well plate, pre-treated with a solution of CellTak according to the supplier's recommendations (Corning). After 30 min incubation in a CO2-free oven, the plate has been analysed with the “Seahorse” using a protocol allowing injection (indicated by arrows in
In
In conclusion, compounds (Ia), (Ib) and (Ic) behave as mitochondrial respiration inhibitors (=also known as OXPHOS inhibitors), with a moderate and progressive effect compared to rotenone or “IACS-010759”. Equivalent results have been obtained for the various lines tested.
4.2 Analysis of the Effect on Cell Growth of Treatment of Human Tumour Cells from a B Cell Lymphoma Line with Compounds (Ia), (Ib) and (Ic)
Cells from a human B cell lymphoma cell line (“Karpas422, CVCL_1325”) have been seeded at a density of 100,000 cells per well, in a 96-well plate in the presence of a 10 μM concentration of compound, in a volume of 100 μL of medium. After 48 h of treatment, analyses of the effect on cell growth have been conducted, either by counting live cells using flow cytometry (
In
Based on
4.3 Analysis of the Effect on Cell Growth of Treating Human Tumour Cells from a Wide Series of B and T Cell Lymphoma Cell Lines with Compound (Ia)
Analyses of the effect on cell growth of compound (Ia) in accordance with the invention in comparison with compound “IACS-010769” (denoted IACS) not in accordance with the invention have been conducted on a wide series of 31 human B and T cell lymphoma lines, after AnnexinV/PI labelling and analysis with the “ATTUNE” cytometer (Thermo Fisher Scientific). In addition to the number of living cells represented in
Based on
Preclinical evaluation analyses of the anti-tumour efficacy of compound (Ia) have been carried out using the xenograft model on the chorioallantoic membrane (CAM) of the chicken embryo.
In
In
In
In conclusion, compound (Ia), which is chemically different and acts differently on the OCR, has antitumour efficacy comparable to that of the “IACS-010759” molecule, in the preclinical model used in this example. Compound (Ia) also inhibits tumour dissemination.
4.5 Analysis of the Effect on Cell Growth of Treating Human Cells from Two Sarcoma Lines with Compounds (Ia), (Ib) and (Ic)
Human tumour cells from two paediatric rhabdomyosarcoma-like sarcoma lines (“RD136, CVCL_1649”,
In
In conclusion, compounds (Id), (Ib) and (Ic) inhibits cell growth in the RD136 and RH30 lines by reducing the number of living cells after 48 h of treatment. Their effect is similar to that obtained with the inhibitor “IACS-010759” or rotenone. The field of application for these compounds can therefore be extended beyond haematological cancers such as lymphomas, for example to solid tumours such as the paediatric human sarcomas exemplified here.
4.6 Analysis of the IC50 of a Compound (Ia) in Accordance with the Invention Compared with that of a Compound of Prior Art
The IC50 of compound (Ia) has been compared with that of a compound as described in WO2020/109506 having the following formula:
The results have shown an IC50 of 1.5 μM for compound (Ia) and 15.1 μM for the compound as described in WO2020/109506. This shows the improved performance of compound (Ia) compared to the compound of prior art. These experiments have been performed using cells from a human B cell lymphoma cell line (“Karpas422, CVCL_1325”) which have been seeded in “RPMI 1640” medium (11 mM glucose) supplemented with 10% serum, in the presence of increasing concentrations of compounds.
After 48 h of treatment, analyses of the effect on cell growth have been conducted, using the “CellTiter-Fluor Cell Viability Assay” (Promega) live cell detection kit, as in
To a solution of 700 mg (3.49 mmoles) of 1,12-dodecanediamine in 30 mL of dioxane, 2.2 equivalents (7.69 mmoles; 880 mg) of 2-chloropyrimidine and 5 equivalents (17.47 mmoles; 2.4 g) of potassium carbonate have been added. The reaction mixture has been heated under reflux of dioxane for 20 h. After cooling, the dioxane has been concentrated under reduced pressure. The residue obtained has been taken up in 50 mL of ethyl acetate, washed once with a saturated sodium chloride solution, dried over magnesium sulphate, and evaporated under reduced pressure. The derivative obtained has been purified by silica gel chromatography using as the eluent: ethyl acetate/cyclohexane (90/10).
The expected compound has been obtained in 26% yield as a white solid.
It has the following characteristics: melting point Mp=105° C., C20H32N6=356.50 g/mol.
1H NMR (CDCl3): 8.20 (d; J=4.8 Hz; 4H); 6.43 (t; J=4.8 Hz; 2H); 5.11 (bs; 2H); 3.32 (td; J=7.1; 5.7 Hz; 4H); 1.57-1.50 (m, 4H); 1.35-1.18 (m; 16H).
13C NMR (CDCl3): 162.4 (2C); 158.0 (4C); 110.3 (2C); 41.5 (2C); 29.6 (2C); 29.5 (2C); 29.4 (2C); 27.0 (2C)
To a solution of 800 mg (3.10 mmoles) of 1,7-dibromoheptane in 30 mL of dioxane 2 equivalents (6.20 mmoles; 1.0 g) of 2-piperazin-1-ylpyrimidine and 7 equivalents (21.70 mmoles; 3.0 g) of potassium carbonate have been added. The reaction mixture has been heated under reflux of dioxane for 20 hours. After cooling, the dioxane has been concentrated under reduced pressure. The residue obtained has been taken up in 50 mL of dichloromethane, washed once with a saturated sodium chloride solution, dried over magnesium sulphate, and evaporated under reduced pressure. The derivative obtained has been purified by silica gel chromatography using as the eluent: dichloromethane/methanol/triethylamine (98/1/1).
The expected compound has been obtained in 30% yield as a white solid.
It has the following characteristics: melting point Mp=86° C., C23H36N8=424.58 g/mol.
1H NMR (CDCl3): 8.23 (d; J=4.7 Hz; 4H); 6.40 (t; J=4.7 Hz; 2H), 3.78-3.75 (m; 8H); 2.44-2.41 (m; 8H); 2.31-2.27 (m; 4H); 1.50-1.43 (m; 4H); 1.28-1.24 (m; δH).
13C NMR (CDCl3): 161.7 (2C); 157.7 (4C); 109.8 (2C); 58.9 (2C); 53.2 (4C); 46.2 (2C); 43.7 (2C); 29.5; 27.6 (2C); 26.9 (2C).
To a solution of 800 mg (3.10 mmoles) of 1,7-dibromoheptane in 30 mL of dioxane, 2 equivalents (6.20 mmoles; 1.0 g) of 1-(2-pyridyl)piperazine and 7 equivalents (21.70 mmoles; 3.0 g) of potassium carbonate have been added. The reaction mixture has been heated under reflux of dioxane for 20 hours. After cooling, the dioxane has been concentrated under reduced pressure. The residue obtained has been taken up in 50 mL of dichloromethane, washed once with a saturated sodium chloride solution, dried over magnesium sulphate, and evaporated under reduced pressure. The derivative obtained has been purified by silica gel chromatography using as the eluent: dichloromethane/methanol/triethylamine (98/1/1).
150 mg (0.354 mmole) of 1-(2-pyridyl)-4-[7-[4-(2-pyridypiperazin-1-yl]heptyl]piperazine have been dissolved in 5-10 mL of ethanol. Hydrochloric acid gas has been bubbled through the reaction medium for 2 minutes. After stirring, the precipitate has been collected by filtration, washed with diethyl ether, and dried.
The expected compound has been obtained in 82% yield as a white solid.
It has the following characteristics: melting point Mp=210° C., C25H38N6·2HCl=495.53 g/mol.
1H NMR (D2O): 8.06 (m; 2H); 7.93 (d; J=6.3 Hz; 2H); 7.30 (d; J=9.2 Hz; 2H); 7.06 (t; J=6.7 Hz; 2H); 4.28 (d; J=14.5 Hz; 4H); 3.73 (d; J=12.8 Hz; 4H); 3.59 (t; J=13.5 Hz; 4H); 3.30-3.13 (m; 8H); 1.71 (m; 4H); 1.34 (m; 6H).
13C NMR (D2O): 152.1 (2C); 145.6 (2C); 136.6 (2C); 115.0 (2C); 113.3 (2C); 57.1 (2C); 50.5 (4C); 43.2 (4C); 27.7; 25.5 (2C); 23.3 (2C).
Cells from the human B cell lymphoma cell line (“RL, CVCL_1660”), have been seeded at a density of 100,000 cells per well, in a 96-well plate in the presence of a concentration of 5 μM or 10 μM of compound, in a volume of 100 μL of RPMI medium. After 48 h of treatment, analyses of the effect on cell growth have been conducted by counting live cells using flow cytometry, as in
In
Human tumour cells from the paediatric rhabdomyosarcoma sarcoma line (“RH30, CVCL_0041”) have been seeded in a 96-well plate in the presence of a 10 μM or 25 μM concentration of compound, in a 100 μL volume of “Gibco Human Like Plasma Medium” (Gibco HPLM_Thermo Fisher Scientific). After 48 h of treatment, the effect of compounds (Ia), (Ie) and (If) on cell growth has been evaluated using the Promega “CellTiterFluor” kit as in
In
In conclusion, compounds (Ia), (Ie) and (If) inhibit cell growth of the RH30 line by reducing the number of living cells after 48 h of treatment. The field of application for these compounds can therefore be extended beyond haematological cancers such as lymphomas, for example to solid tumours such as the paediatric human sarcomas exemplified here.
| Number | Date | Country | Kind |
|---|---|---|---|
| FR2203261 | Apr 2022 | FR | national |
| Filing Document | Filing Date | Country | Kind |
|---|---|---|---|
| PCT/EP2023/059306 | 4/7/2023 | WO |