Patent Application
20230348422
Albicidin is a natural product, isolated from Xanthomonas albilineans and heterologously expressed in Xanthononas axonopodis pv vesicatoria. Its structure (see below) is based on peptides and amino acids, but it does not contain any proteinogenic amino acids.
Albicidin is, on the one hand, a causative agent of the leaf scald disease in sugar cane and on the other hand a DNA-gyrase-inhibitor of prokaryotic cells (gram-positive and -negative). The mentioned properties make the natural product albicidin a potential antibiotic.
The known molecular structure of albicidin and available synthetic routes allows the development of a plurality of novel derivatives that may exhibit potential antimicrobial activities.
The problem underlying the solution is the provision of new compounds, which comprise antibiotic properties, a method of their synthesis and their use. This problem is attained by the subject-matter of the compounds as described herein.
The term “purity” as used in the context of the present specification with respect to a preparation of a certain compound refers to the content of said compound relative to the sum of all compounds contained in the preparation. The term “compound” in this context is to be understood as a compound according to the solution (or any specific embodiments thereof) as well as any salts, hydrates or solvates thereof. Thus, the respective salts, hydrates or solvates are not considered as impurities according to the previous definition. The “purity” of a compound may be determined using elemental analysis, HPLC analysis using UV diode array detection also in combination with mass spectrometry detection, or quantitative NMR analysis.
The term “substituted” refers to the addition of a substituent group to a parent moiety. “Substituent groups” can be protected or unprotected and can be added to one available site or to many available sites in a parent moiety. Substituent groups may also be further substituted with other substituent groups and may be attached directly or by a linking group such as an alkyl, an amide or hydrocarbyl group to a parent moiety. “Substituent groups” amenable herein include, without limitation, halogen, subst. oxygen, subst. nitrogen, subst. sulphur, hydroxyl, alkyl, alkenyl, alkynyl, acyl (—C(O)Ra), carboxyl (—C(O)ORa), aliphatic groups, alicyclic groups, alkoxy, substituted oxy (—ORa), aryl, aralkyl, heterocyclic radical, heteroaryl, heteroarylalkyl, amino (—N(Rb)(Rc)), imino(=NRb), amido (—C(O)N(Rb)(Rc) or —N(Rb)C(O)Ra), hydrazine derivates —NRaNRbRc, tetrazolyl (CN4H1), azido (—N3), nitro (—NO2), cyano (—CN), isocyano (—NC), cyanato (—OCN), isocyanato (—NCO), thiocyanato (—SCN); isothio-cyanato (—NCS); carbamido (—OC(O)N(Rb)(Rc) or —N(Rb)C(O)ORa), substituted thio (—SRb), sulfinyl (—S(O)Rb), sulfonyl (—S(O)2Rb), sulfonamidyl (—S(O)2N(Rb)(Rc) or —N(Rb)S(O)2Rb) and fluorinated groups such as —CH2CF3, —CHFCF3, —CF2CF3, —CHF2, —CH2F, —CF3, —OCF3, —SCF3, —SOCF3 or —SO2CF3. Wherein each Ra, Rb and Rc is, independently, H or a further substituent group with a preferred list including without limitation, H, alkyl, alkenyl, alkynyl, cycloalkyl, alkoxy, acyl, aryl, heteroaryl, alicyclyl, heterocyclyl and heteroarylalkyl.
As used herein the term “alkyl,” refers to a saturated straight or branched hydrocarbon moiety containing up to 8, particularly up to 4 carbon atoms. Examples of alkyl groups include, without limitation, methyl, ethyl, propyl, butyl, isopropyl, n-hexyl, octyl, and the like. Alkyl groups typically include from 1 to about 8 carbon atoms (C1-C8 alkyl), particularly with from 1 to about 4 carbon atoms (C1-C4 alkyl).
As used herein the term “cycloalkyl” refers to an interconnected alkyl group forming a saturated or unsaturated ring (whereby an unsaturated cycle can also be defined as “cycloalkenyl”) or polyring structure containing 3 to 10, particularly 5 to 10 carbon atoms. Examples of cycloalkyl groups include, without limitation, cyclopropyl, cyclopentyl, cyclohexyl, norbornyl, decalinyl or adamantyl (derived from tricyclo[3.3.1.1]decane), and the like. Cycloalkyl groups typically include from 5 to 10 carbon atoms (C5-C10 cycloalkyl).
Alkyl or cycloalkyl groups as used herein may optionally include further substituent groups. A substitution on the cycloalkyl group also encompasses an aryl, a heterocyclyl or a heteroaryl substituent, which can be connected to the cycloalkyl group via one atom or two atoms of the cycloalkyl group (like tetraline).
As used herein the term “haloalkyl,” refers to a saturated straight or branched hydrocarbon moiety containing 1 to 8, particularly 1 to 4, carbon atoms and at least one halogen atom, in particular Cl or F, connected to a carbon atom. Examples of haloalkyl groups include, without limitation, CF3, CHF2, CH2F, CH2CF3, CH2CHF2, CH2CH2F, CHFCF3, CHFCHF2, CHFCH2F, CF2CF3, CF2CHF2, CF2CH2F and the like. Haloalkyl groups typically include 1 to 4 carbon atoms (C1-C4 haloalkyl). More particularly haloalkyl groups comprise only F as halogen atoms.
As used herein the term “halo cycloalkyl” refers to an interconnected alkyl group forming a saturated or unsaturated ring or polyring structure containing 3 to 10, particularly 5 to 10 carbon atoms and at least one halogen atom, in particular Cl or F, connected to a carbon atom. Examples of halo cycloalkyl groups include, without limitation, fluorocyclopropyl, chlorocyclohexyl, dichlorocyclohexyl, chloroadamantyl, and the like. Halo cycloalkyl groups typically include from 5 to 10 carbon atoms (C5-C10 cycloalkyl). More particularly cyclohaloalkyl groups comprise only F as halogen atoms.
Halo alkyl or halo cycloalkyl groups as used herein may optionally include further substituent groups. A substitution on the halo cycloalkyl group also encompasses an aryl, a heterocyclyl or a heteroaryl substituent, which can be connected to the halo cycloalkyl group via one atom or two atoms of the halo cycloalkyl group (like tetraline).
As used herein the term “alkenyl,” refers to a straight or branched hydrocarbon chain moiety containing up to 8 carbon atoms and having at least one carbon-carbon double bond. Examples of alkenyl groups include, without limitation, ethenyl, propenyl, butenyl, 1-methyl-2-buten-1-yl, dienyl groups such as 1,3-butadienyl and the like. Alkenyl groups typically include from 2 to about 8 carbon atoms, more typically from 2 to about 4 carbon atoms. Alkenyl groups as used herein may optionally include further substituent groups.
As used herein the term “alkynyl,” refers to a straight or branched hydrocarbon moiety containing up to 8 carbon atoms and having at least one carbon-carbon triple bond. Examples of alkynyl groups include, without limitation, ethynyl, 1-propynyl, 1-butynyl, and the like. Alkynyl groups typically include from 2 to about 8 carbon atoms, more typically from 2 to about 4 carbon atoms. Alkynyl groups as used herein may optionally include further substituent groups.
As used herein the term “carboxy,” refers to a carboxy (—C(═O)—O— or —O—C(═O)—) alkyl moiety containing 1 to 8, particularly 1 to 4 carbon atoms comprising at least one carboxy moiety, wherein the carboxy group is used to attach the carboxy group to a parent molecule. Examples of carboxy groups include without limitation, formate, acetate, lactate, citrate, oxalate and the like. Carboxy groups as used herein may optionally include further substituent groups. In particular “carboxy” groups include straight or branched polycarboxy groups (polyester), which comprise several interconnected monomeric carboxy groups (e. g. —C(═O)—O—CH2—CH2—). Non limiting examples are polyethylester or polyacrylate.
As used herein the term “alkoxy,” refers to an oxygen alkyl moiety containing 1 to 8, particularly 1 to 4 carbon atoms comprising at least one oxygen moiety, wherein the oxygen atom is used to attach the alkoxy group to a parent molecule. Examples of alkoxy groups include without limitation, methoxy, ethoxy, n-propoxy, isopropoxy, n-butoxy, sec-butoxy, tert-butoxy, n-pentoxy, neopentoxy, n-hexyloxy and the like. Alkoxy groups as used herein may optionally include further substituent groups. In particular “alkoxy” groups include straight or branched polyalkoxy groups (polyether), which comprise several interconnected monomer alkoxy groups (e. g. —O—CH2—CH2—). Non limiting examples are groups derived from polyethyleneglycol (PEG) or polypropylenglycol (PPG).
As used herein the term “heterocyclyl” refers to an interconnected alkyl group forming a saturated or unsaturated ring or polyring structure containing 3 to 10, particularly 5 to 10 carbon atoms in which at least one carbon atom is replaced with an oxygen, a nitrogen or a sulphur atom forming a non-aromatic structure. Examples of heterocyclyl groups include, without limitation, oxalanyl, pyrrolidinyl or piperidinyl. Heterocyclic groups as used herein may optionally include further substituent groups. A substitution on the heterocyclic group also encompasses an aryl, a cycloalkyl or a heteroaryl substituent, which can be connected to the heterocyclic group via one atom or two atoms of the heterocyclic group (comparable to indole or indoline).
As used herein the term “aryl” refers to a hydrocarbon with alternating double and single bonds between the carbon atoms forming an aromatic ring structure, in particular a six (C6) to ten (C10) membered ring or polyring structure. The term “heteroaryl” refers to aromatic structures comprising a five to ten membered ring or polyring structure, comparable to aryl compounds, in which at least one member is an oxygen or a nitrogen or a sulphur atom. Due to simplicity reasons they are denominated C5 to C10 heteroaryl, wherein at least one carbon atom is replaced with an oxygen, a nitrogen or a sulphur atom forming an aromatic structure. For example a C5 heteroaryl comprises a five membered ring structure with at least one carbon atom being replaced with an oxygen, a nitrogen or a sulphur atom. Examples for such a C5 heteroaryl are triazolyl, pyrazolyl, imidazolyl, thiophenyl, furanyl or oxazolyl. A C6 heteroaryl can be pyridyl, pyrimidinyl or triazinyl. A C9 heteroaryl can be indolyl and a C10 heteroaryl can be quinolinyl. Aryl or hetero aryl groups as used herein may optionally include further substituent groups. A substitution on the hetero aryl group also encompasses an aryl, a cycloalkyl or a heterocyclyl substituent, which can be connected to the hetero aryl via one atom or two atoms of the hetero aryl group (comparable to indole). The same applies to an aryl group.
According to one aspect of the proposed solution compounds are provided having the general formulae (1)
In one embodiment of the compound of general formulae (1) one of E, F, G are as follows:
wherein at least one, preferably two of E, F or G is —CO—NH—.
In one embodiment the present compound may be of general formulae (1a)
wherein BC, YD, E, R11 and R10 and R12 have the above meaning.
In a preferred embodiment the present compound may be of the general formulae (1b)
wherein BC, YD, E, R11 and R10 have the above meaning.
In a preferred embodiment the present compound may be of the general formulae (1c)
wherein BC, YD, F, R11 and R10 have the above meaning. In a preferred embodiment n for R11 is 0 or 1 or 2.
In a preferred embodiment the present compound may be of the general formulae (1d)
wherein BC, YD, G, R11 and R10 have the above meaning.
In yet another preferred embodiment the present compound may be of the general formulae (1e)
wherein BC, YD, E, R11 and R10 have the above meaning.
In yet another preferred embodiment the present compound may be of the general formulae (1f)
wherein BC, YD, F, R11 and R10 have the above meaning.
In yet another preferred embodiment the present compound may be of the general formulae (1g)
wherein BC, YD, G, R11 and R10 have the above meaning.
According to another aspect, the solution relates to compounds having a molecular structure as defined by formula (2)
In one embodiment of the present compound according to general formulae (2)
X1 is —CH2CH2Ra, —CHCHRa, —CCRa.
In a preferred embodiment of the present compound according to general formulae (1a) X, in formulae (Ia) is selected from —CC—C6H4—CN, —CC—C6H4—OH, —CC—C6H4—OCH3, —CC—C5H3N—OCH3, —CC—C6H5—F; —CHCH—C6H4—OH; —CH2CH2—C6H4—OH.
In another embodiment of the present compound according to general formulae (2) X1 in is —NHCNHRa or —(NHCN)Ra, wherein (NHCN) forms a ring with the phenyl of formulae (Ia), wherein Ra is phenyl.
In yet another embodiment of the present compound according to general formulae (2) X1 in is Z—CONH—, wherein A being
In a specific embodiment Z may be a 1,2,3-triazole, a tetrazole, an indole with at least one OH-substituent, naphthyl with at least one OH-substituent, —CHCH3—O—CsH4OH, —CH2—O—CsH4OH.
In a preferred embodiment the present compound may be of the general formulae (2a)
wherein X1, BC, YD, R11 and R10 have the above meaning.
In a further preferred embodiment, the present compound may be of the general formulae (2b)
wherein X1 and BC have the above meaning.
It is to be understood that with Rt and L1, L2 as defined for BC there could be two chiral centers here (providing L1 and L2 are not the same). Thus diastereoisomers are possible in addition to enantiomers.
In one embodiment of the present compounds the moiety L1 is a five membered or six membered aromatic heterocycle or 3-7 membered non-aromatic heterocycle, preferably a five membered or six membered aromatic N-heterocycle or non-aromatic N heterocycle that may be substituted or unsubstituted.
In specific embodiments the moiety L1 is a five membered aromatic N-heterocycle selected from a group comprising substituted or unsubstituted
The aromatic five membered heterocyles may be preferably substituted by a C1-C6 alkyl moiety, most preferably by a methyl or ethyl moiety. It is most preferred, if the N atom is substituted by a C1-C6 alkyl moiety, most preferably by a methyl or ethyl moiety.
In further embodiments of the present compound of formula (1) the moiety L1 is a five membered non-aromatic N-heterocycle selected from a group comprising substituted or unsubstituted
In yet further embodiments the moiety L1 is a six membered aromatic N-heterocycle selected from a group comprising substituted or unsubstituted pyridines, pyridazines, pyrimidines, pyrazines, triazines and tetrazines.
In still another embodiment of the present compound of formula (1) the moiety L1 is a six membered non-aromatic N heterocycle selected from a group comprising substituted or unsubstituted piperidines and piperazines or morpholines.
The non-aromatic 5 and 6 membered heterocycles may be preferably substituted by a C1-C6 alkyl moiety, most preferably by a methyl or ethyl moiety. It is most preferred, if the N atom is substituted by a C1-C6 alkyl moiety, most preferably by a methyl or ethyl moiety. For example, a suitable substituted N-heterocycle may be N-methyl piperidine.
The moiety L2 may be selected from —H, —OH, —ORd, and —CH3, —C2H6 or —C3H7, with Rd being substituted or unsubstituted C1-C5 alkyl, preferably a C1-C3 alkyl.
In another preferred embodiment of the present compounds n of R10n and n of R11n is 0, 1, 2, 3 or 4, in particular n of R10n and n of R11n is 0, 1, 2 or 3, and with each R10 and with each R11 independently from any other R10 being selected from —OH, —F, —OCH3, —OC2H5, —OnC3H7, —OisoC3H7, —OCF3, —CF3 or —(CH2)m—ORa,
Particular embodiments of the proposed solution are one the following compounds:
In one scenario this specific compound may be disclaimed.
In one scenario this specific compound may be disclaimed.
In one scenario this specific compound may be disclaimed.
The compounds of the proposed solution may be used in a method of treatment of diseases, in particular for use in a method of treatment of bacterial infections. For this purpose, the present compounds may be provided in a pharmaceutical acceptable form.
Pharmaceutically acceptable salts of the present compounds mean both their organic and inorganic salts as described in Remington's Pharmaceutical Sciences (17th edition, page 1418 (1985)). Because of the physical and chemical stability and the solubility, preference is given for acidic groups inter alia to sodium, potassium, calcium and ammonium salts; preference is given for basic groups inter alia to salts of maleic acid, fumaric acid, succinic acid, malic acid, tartaric acid, methylsulfonic acid, hydrochloric acid, sulfuric acid, phosphoric acid or of carboxylic acids or sulfonic acids, for example as hydrochlorides, hydrobromides, phosphates, sulfates, methanesulfonates, acetates, lactates, maleates, fumarates, maleates, gluconates, and salts of amino acids, of natural bases or carboxylic acids. The preparation of pharmaceutically acceptable salts from compounds of the formula (I) which are capable of salt formation, including their stereoisomeric forms, takes place in a manner known per se. The present compounds form stable alkali metal, alkaline earth metal or optionally substituted ammonium salts with basic reagents such as hydroxides, carbonates, bicarbonates, alcoholates and ammonia or organic bases, for example trimethyl- or triethylamine, ethanolamine, diethanolamine or triethanolamine, trometamol or else basic amino acids, for example lysine, ornithine or arginine. Where the compounds of the formula (I) have basic groups, stable acid addition salts can also be prepared with strong acids. Suitable pharmaceutically acceptable acid addition salts of the compounds of the solution are salts of inorganic acids such as hydrochloric acid, hydrobromic, phosphoric, metaphosphoric, nitric and sulfuric acid, and of organic acids such as, for example, acetic acid, benzenesulfonic, benzoic, citric, ethanesulfonic, fumaric, gluconic, glycolic, isethionic, lactic, lactobionic, maleic, malic, methanesulfonic, succinic, p-toluenesulfonic and tartaric acid. The hydrochloride salt is a preferred salt.
Salts with a pharmaceutically unacceptable anion such as, for example, trifluoroacetate likewise belong within the framework of the solution as useful intermediates for the preparation or purification of pharmaceutically acceptable salts and/or for use in non-therapeutic, for example in vitro, applications.
The solution furthermore relates to pharmaceutical preparations (or pharmaceutical compositions) which contain an effective amount of at least one of the present compounds and/or its pharmaceutically acceptable salts and a pharmaceutically acceptable carrier, i. e. one or more pharmaceutically acceptable carrier substances (or vehicles) and/or additives (or excipients). The pharmaceuticals can be administered orally, for example in the form of pills, tablets, lacquered tablets, coated tablets, granules, hard and soft gelatin capsules, solutions, syrups, emulsions, suspensions or aerosol mixtures. Administration, however, can also be carried out rectally, for example in the form of suppositories, or parenterally, for example intravenously, intramuscularly or subcutaneously, in the form of injection solutions or infusion solutions, microcapsules, implants or rods, or percutaneously or topically, for example in the form of ointments, solutions or tinctures, or in other ways, for example in the form of aerosols or nasal sprays.
The pharmaceutical preparations according to the solution are prepared in a manner known per se and familiar to one skilled in the art, pharmaceutically acceptable inert inorganic and/or organic carrier substances and/or additives being used in addition to the compound(s) of the formula (I) and/or its (their) pharmaceutically acceptable salts and/or its (their) prodrugs. For the production of pills, tablets, coated tablets and hard gelatin capsules it is possible to use, for example, lactose, corn starch or derivatives thereof, talc, stearic acid or its salts, etc. Carrier substances for soft gelatin capsules and suppositories are, for example, fats, waxes, semisolid and liquid polyols, natural or hardened oils, etc. Suitable carrier substances for the production of solutions, for example injection solutions, or of emulsions or syrups are, for example, water, saline, alcohols, glycerol, polyols, sucrose, invert sugar, glucose, vegetable oils, etc. Suitable carrier substances for microcapsules, implants or rods are, for example, copolymers of glycolic acid and lactic acid. The pharmaceutical preparations normally contain about 0.5 to about 90% by weight of the present compounds and/or their pharmaceutically acceptable salts and/or their prodrugs. The amount of the active ingredient of the formula (1) and/or its pharmaceutically acceptable salts and/or its prodrugs in the pharmaceutical preparations normally is from about 0.5 to about 1000 mg, preferably from about 1 to about 500 mg.
A prodrug within the meaning of the solution is a precursor chemical compound of a biological active compound of the solution. Instead of administering the active compound or drug, a prodrug might be used instead to improve the absorption, distribution, metabolization and excretion. Prodrugs are often designed to improve bioavailability when a drug itself is poorly absorbed from the gastrointestinal tract. A prodrug may also be used to improve the selectively of the drug. This reduces adverse or unintended effects of a drug, especially important in treatments like chemotherapy, which can have severe unintended and undesirable side effects.
In addition to the active compound according to the solution and/or their pharmaceutically acceptable salts and to carrier substances, the pharmaceutical preparations can contain one or more additives such as, for example, fillers, disintegrants, binders, lubricants, wetting agents, stabilizers, emulsifiers, preservatives, sweeteners, colorants, flavourings, aromatizers, thickeners, diluents, buffer substances, solvents, solubilizers, agents for achieving a depot effect, salts for altering the osmotic pressure, coating agents or antioxidants. They can also contain two or more of the present compounds and/or their pharmaceutically acceptable salts. In case a pharmaceutical preparation contains two or more of the present compounds the selection of the individual compounds can aim at a specific overall pharmacological profile of the pharmaceutical preparation. For example, a highly potent compound with a shorter duration of action may be combined with a long-acting compound of lower potency. The flexibility permitted with respect to the choice of substituents in the present compounds allows a great deal of control over the biological and physico-chemical properties of the compounds and thus allows the selection of such desired compounds. Furthermore, in addition to at least one compound and/or its pharmaceutically acceptable salts, the pharmaceutical preparations can also contain one or more other therapeutically or prophylactically active ingredients. When using the present compounds the dose can vary within wide limits and, as is customary and is known to the physician, is to be suited to the individual conditions in each individual case. It depends, for example, on the specific compound employed, on the nature and severity of the disease to be treated, on the mode and the schedule of administration, or on whether an acute or chronic condition is treated or whether prophylaxis is carried out. An appropriate dosage can be established using clinical approaches well known in the medical art. In general, the daily dose for achieving the desired results in an adult weighing about 75 kg is from about 0.01 to about 100 mg/kg, preferably from about 0.1 to about 50 mg/kg, in particular from about 0.1 to about 10 mg/kg, (in each case in mg per kg of body weight). The daily dose can be divided, in particular in the case of the administration of relatively large amounts, into several, for example 2, 3 or 4, part administrations. As usual, depending on individual behaviour it may be necessary to deviate upwards or downwards from the daily dose indicated.
The compounds of the solution may also exist in various polymorphous forms, for example as amorphous and crystalline polymorphous forms. All polymorphous forms of the compounds of the solution belong within the framework of the solution and are a further aspect of the solution.
The compounds of the solution may be present as optical isomers or as mixtures thereof. The solution relates both to the pure isomers and all possible isomeric mixtures and is hereinafter understood as doing so, even if stereochemical details are not specifically mentioned in every case. Enantiomeric mixtures of compounds of the general formula 1, which are obtainable by the process or any other way, may be separated in known manner—on the basis of the physical-chemical differences of their components—into pure enantiomers, for example by fractional crystallisation, distillation and/or chromatography, in particular by preparative HPLC using a chiral HPLC column.
According to the solution, apart from separation of corresponding isomer mixtures, generally known methods of diastereoselective or enantioselective synthesis can also be applied to obtain pure diastereoisomers or enantiomers, e.g. by carrying out the method described hereinafter and using educts with correspondingly suitable stereochemistry.
It is advantageous to isolate or synthesize the biologically more active isomer, provided that the individual compounds have different biological activities.
The solution is explained in more detail by means of the following examples.
One general procedure for the synthesis of albicidin-derivatives with variations to amide bonds may comprise the steps according to the following procedure:
Compound 1 is synthesized in a multistep synthesis route as follows:
The literature known amine 1 (1 eq, 11.87 mmol, 5.56 g) was dissolved in anhydrous THF (24 mL) and triethylamine (3.01 eq, 35.71 mmol, 4.95 mL) was added. The solution was cooled to −15° C. and 4-Nitrobenzoylchloride (1.51 eq, 17.88 mmol, 3.32 g) was added in one portion. The reaction mixture was stirred for 20 minutes and diluted with diethyl ether (22 ml). The solid was filtered, washed with diethyl ether (3×50 ml) and dried in vacuo to yield II (7.30 g, 0.012 mmol, ˜quant.) as a yellow solid.
1H NMR (DMSO-d6, 400 MHz): δ (ppm)=10.65 (s, 1H), 10.27 (s, 1H), 8.35-8.41 (m, 2H), 8.32 (d, J=8.8 Hz, 1H), 8.17-8.22 (m, 2H), 7.83 (q, J=8.8 Hz, 2H), 7.57 (d, J=8.8 Hz, 1H), 5.98-6.17 (m, 3H), 5.35-5.44 (m, 3H), 5.22-5.32 (m, 3H), 4.75-4.82 (m, 4H), 4.52-4.56 (m, 2 H), 3.93 (s, 3H), 3.90 (s, 3H).
13C NMR (DMSO-d6, 101 MHz): δ (ppm)=164.5, 164.4, 162.4, 151.1, 149.7, 149.3, 145.1, 142.5, 139.9, 136.5, 135.9, 134.0, 132.7, 132.6, 129.5, 126.3, 125.4, 123.8, 123.6, 120.3, 120.1, 119.6, 118.1, 117.9, 114.9, 75.1, 74.6, 65.1, 61.0, 60.9.
HRMS (ESI): m/z calc. for C32H31N3O10 [M+H]+: 618.2082; found 618.2079
Compound II (1 eq, 12.84 mmol, 7.30 g) was suspended in a mixture of ethanol (800 ml) and acetic acid (100 ml) and cooled to 0° C. Zinc dust (33.80 g) was added portion wise. After 20 min the reaction was proven to be complete (verified by TLC-control). The solid was filtered and washed with DCM (3×100 ml). The combined liquids were evaporated to dryness. The residue was taken up in DCM (300 ml) and saturated aqueous NaHCO3—Solution (300 ml). The aqueous phase was further extracted twice with DCM (2×100 ml). The combined organic fractions were washed successively with saturated aqueous NaHCO3—Solution (1×300 ml), distilled water (1×300 ml) and brine (1×300 ml), dried over Na2SO4 and evaporated to obtain III (5.79 g, 9.85 mmol, 83%) as a yellow solid.
1H NMR (DMSO-d6, 400 MHz): δ (ppm)=10.65 (s, 1H), 9.19 (s, 1H), 8.34 (d, J=8.8 Hz, 1H), 8.01 (d, J=8.8 Hz, 1H), 7.79 (d, J=8.8 Hz, 1H), 7.68-7.74 (m, 2H), 7.57 (d, J=9.0 Hz, 1H), 6.59-6.65 (m, 2H), 5.98-6.18 (m, 3H), 5.89 (s, 2H), 5.40 (tdd, J=11.5, 5.6, 1.5 Hz, 3H), 5.21-5.32 (m, 3H), 4.75-4.83 (m, 4H), 4.54 (d, J=5.8 Hz, 2H), 3.93 (s, 3H), 3.92 (s, 3H).
13C NMR (DMSO-d6, 101 MHz): δ (ppm)=165.0, 164.4, 162.4, 152.7, 151.1, 149.4, 143.3, 142.4, 137.2, 136.6, 134.0, 132.7, 132.6, 129.4, 126.3, 125.6, 121.7, 120.2, 120.1, 120.0, 118.1, 117.8, 117.5, 114.8, 112.7, 75.1, 74.5, 65.1, 61.0, 60.9.
HRMS (ESI): m/z calc. for C32H33N3O8 [M+H]+: 588.2340; found 588.2343
Literature known Boc-β-(1-pivaloyloxymethyl)-1,2,3-triazol-4-yl)-Alanine (1.46 eq, 3.99 mmol, 1.48 g) was dissolved in THF (20 ml) and cooled to 0° C. N-Ethoxycarbonyl-2-ethoxy-1,2-dihydroqinoline (EEDQ) (3.00 eq, 8.20 mmol, 2.03 g) was added and after 5 minutes compound III (1 eq, 2.72 mmol, 1.6 g) was added. The reaction mixture was slowly warmed to room temperature and stirred for 16 h. All volatiles were removed in vacuo and the residue was taken up in ethyl acetate (100 ml). The organic fraction was washed with saturated aqueous NaHCO3-Solution (3×50 ml) and brine (1×50 ml), dried over Na2SO4 and evaporated. The residue was purified via flash chromatography on silica gel eluting with 1-15% acetone in DCM. Compound IV (1.90 g, 2.02 mmol, 74%) was obtained as a light-yellow solid.
1H NMR (DMSO-d6, 500 MHz): δ=10.65 (s, 1H), 10.41 (s, 1H), 9.63 (s, 1H), 8.33 (d, J=8.7 Hz, 1H), 7.92-7.99 (m, 4H), 7.74-7.84 (m, 3H), 7.57 (d, J=8.7 Hz, 1H), 7.20 (m, 1H), 6.29 (s, 2 H), 5.99-6.16 (m, 3H), 5.22-5.45 (m, 6H), 4.81 (d, J=6.1 Hz, 2H), 4.77 (d, J=5.5 Hz, 2H), 4.54 (d, J=5.6 Hz, 3H), 3.93 (d, J=6.1 Hz, 6H), 2.96-3.16 (m, 2H), 1.26-1.38 (m, 9H), 1.09 ppm (s, 9H)
13C NMR (DMSO-d6, 126 MHz): δ=176.4, 170.7, 164.8, 164.4, 162.4, 155.3, 151.1, 149.5, 144.2, 143.4, 142.5, 142.2, 136.5, 133.9, 132.7, 132.6, 128.7, 128.5, 126.3, 125.5, 124.1, 122.7, 120.3, 120.1, 118.7, 118.6, 118.1, 117.8, 114.8, 78.3, 75.1, 74.5, 69.8, 65.1, 61.0, 60.9, 54.9, 38.1, 28.1, 26.4 ppm
HRMS (ESI): m/z calc. for C48H57N7O13 [M+H]+ 940.4087, found 940.4088.
Tetrapeptide IV (1 eq, 2.00 mmol, 1.88 g) was dissolved in THF (5 ml) and morpholine (20 eq, 40.00 mmol, 3.48 g) and tetrakis(triphenylphosphin)palladium(0) (0.3 eq, 0.60 mmol, 693 mg) were added. The mixture was stirred for 2.5 h shielded from light. All volatiles were removed in vacuo and the residue was purified via flash chromatography on C-18-material eluting with 5 to 50% acetonitrile in water. Compound V (1.24 g, 1.51 mmol, 76%) was obtained as a white solid.
1H NMR (DMSO-d6, 500 MHz): δ=11.51 (s, 1H), 11.16 (s, 1H), 9.64 (s, 1H), 8.05 (d, J=9.0 Hz, 1H), 7.96 (d, J=8.9 Hz, 3H), 7.81 (d, J=8.9 Hz, 1H), 7.76 (d, J=8.7 Hz, 2H), 7.59 (dd, J=8.9, 3.8 Hz, 2H), 7.17-7.20 (m, 1H), 6.29 (s, 2H), 4.38-4.44 (m, 1H), 3.92 (s, 3H), 3.78 (s, 3H), 2.97-3.15 (m, 2H), 1.26-1.38 (m, 9H), 1.09 ppm (s, 9H)
13C NMR (DMSO-d6, 126 MHz): δ=176.4, 172.0, 164.8, 164.4, 163.3, 154.3, 149.7, 146.2, 143.4, 142.2, 140.1, 137.8, 136.1, 135.9, 128.7, 128.6, 128.3, 125.4, 124.1, 118.7, 116.1, 114.8, 110.3, 109.0, 78.3, 69.8, 60.5, 60.2, 59.7, 38.1, 28.1, 26.4 ppm HRMS (ESI): m/z calc. for C39H45N7O13 [M−H]− 818.3003, found 818.3009.
Tetrapeptide V (1.00 eq, 1.51 mmol, 1.24 g) was dissolved 4 N HCl in dioxane and stirred for 1 hour. The solvent was evaporated in vacuo and the product VI (1.13 g, 1.50 mmol, quant.) was obtained as white solid. Compound VI was used in the next step without further characterization.
HRMS (ESI): m/z calc. for C34H37N7O11 [M+H]+: 720.2624, found: 720.2624.
Commercially available compound VIII (1.00 eq, 11.4 mmol, 2.60 g) and NEt3 (10 mL) were dissolved in THF (10 mL). Compound VII (1.20 eq, 13.6 mmol, 2.18 g) was added to the reaction mixture at 25° C. After 16 h at 45° C. the solvent was removed in vacuo. The resulting solid was diluted with CH2Cl2 (100 mL) and quenched with 1 N HCl. The water phase was extracted with CH2Cl2 (3×) the combined organic layers were washed with 1 N HCl (2×), Brine (1×) and concentrated in vacuo. The crude product was purified by column chromatography (cyclohexane:ethylacetate; 20:1). Compound IX was obtained as a colorless solid (2.29 g, 8.76 mmol, 77%).
1H NMR (DMSO-d6, 500 MHz): δ 8.01 (d, J=8.4 Hz, 2H), 7.92 (d, J=8.4 Hz, 2H), 7.78 (d, J=8.4 Hz, 2H), 7.74 (d, J=8.3 Hz, 2H), 3.88 (s, 3H).
13C NMR (DMSO-d6, 126 MHz): zδ 165.53, 132.65, 132.32, 131.95, 129.93, 129.46, 126.53, 126.12, 118.33, 111.45, 92.08, 90.57, 52.36.
HRMS (ESI): m/z calc. for C17H11NO2 [M+H]+: 262.0863, found: 262.0861.
Methylester IX (1.00 eq, 3.83 mmol, 1.00 g) was dissolved in THF (20 mL). A solution of LiOH (2.00 eq., 7.65 mmol, 321 mg) in water (20 mL) was added. After 3.5 h at r.t. the reaction mixture was concentrated in vacuo and diluted with H2O (10 mL). The product was precipitated with 6 N HCl, filtered and washed with H2O. Compound X (908 mg, 3.67 mmol, 95%) was obtained as a light gray solid.
1H NMR (500 MHz, DMSO-d6) δ 7.99 (d, J=8.4 Hz, 2H), 7.90 (d, J=8.4 Hz, 2H), 7.76 (d, J=8.4 Hz, 2H), 7.70 (d, J=8.4 Hz, 2H).
13C NMR (126 MHz, DMSO-d) δ 166.61, 132.63, 132.30, 131.79, 131.32, 129.59, 126.65, 125.64, 118.36, 111.39, 92.32, 90.25.
HRMS (ESI): m/z calc. for C16H9NO2 [M−H]−: 246.0561, found: 246.0556.
Compound X (1 eq, 2.02 mmol, 500 mg) was dissolved in thionyl chloride (10 eq., 20.2 mmol, 1.45 mL) and refluxed for 2 h at 80° C. All volatiles were removed in vacuo and the obtained acid chloride was dissolved in THF (dry, 2 mL). The solution was cooled to 0° C., then pentachlorophenol (1.10 eq, 2.22 mmol, 592 mg) and triethylamine (2.00 eq., 4.04 mmol, 0.564 mL) was added in one portion. The reaction mixture was stirred for 12 h. The solvent was removed in vacuo and the crude product purified by column chromatography (cyclohexane:ethyl acetate; 15:1). Active ester XI was obtained as a colorless solid (520 mg, 1.05 mmol, 52%).
1H NMR (500 MHz, DMSO-d6) δ 8.28 (d, J=8.3 Hz, 2H), 7.96 (d, J=8.3 Hz, 2H), 7.91 (d, J=8.4 Hz, 2H), 7.84 (d, J=8.3 Hz, 2H).
Due to the low solubility of the compound, no 13C-Data were recorded.
HRMS (ESI): m/z calc. C22H3Cl5NO2 [M+H]+: 495.9041, Mass not found.
The tetrapeptide VI (60 mg, 93 μmol, 1.0 equiv) was dissolved in DMF (2 ml) and triethylamine (8 eq, 0.75 mmol, 0.1 mL) was added. After adding the active ester (1.10 eq, 0.102 mmol, 53.0 mg), the mixture was stirred for 16 h. Then cooled to 0° C. and 3 N KOH(aq) (1 ml) was added dropwise. After 15 min of stirring, 550 μl of 6 N HCl(aq) were added dropwise. The resulting mixture was evaporated to dryness. The residue was purified via prep HPLC. Compound 1 (5 mg, 0.006 mmol, 5%) was obtained as a white fluffy solid.
1H NMR (400 MHz, DMSO-d6) δ 11.54 (s, 1H), 11.17 (s, 1H), 10.56 (s, 1H), 9.68 (s, 1H), 9.01 (d, J=8.03 Hz, 1H), 7.77-7.83 (m, 5H), 7.73 (d, J=8.53 Hz, 2H), 7.60 (d, J=3.51 Hz, 1H), 7.57 (d, J=3.76 Hz, 1H), 4.88-4.99 (m, 1H), 3.92 (s, 3H), 3.78 (s, 3H). 13C NMR (101 MHz, DMSO-d6) δ 132.9 (Ar), 132.7 (Ar), 132.0 (Ar), 128.8 (Ar), 126.3 (Ar), 119.1 (Ar), 115.3 (Ar), 110.3 (Ar), 60.8 (OMe), 60.5 (OMe). HRMS (ESI): m/z calculated for C44H34N8O10 [M+H]+ 835.2471, found 835.2469 (deviation −0.2 ppm), tR=9.38 min.
The following compounds are obtained in an analog synthesis procedures.
1H NMR (400 MHz, DMSO-d6) δ 11.54 (s, 1H), 11.19 (s, 1H), 10.55 (s, 1H), 9.69 (s, 1H), 8.95 (d, J=7.78 Hz, 1H), 8.06 (d, J=9.04 Hz, 1H), 7.97 (d, J=8.78 Hz, 2H), 7.92 (d, J=8.53 Hz, 2H), 7.75-7.84 (m, 3H), 7.63 (d, J=8.53 Hz, 2H), 7.56-7.61 (m, 2H), 7.51-7.56 (m, 2H), 6.98-7.04 (m, 2H), 4.88-4.97 (m, 1H), 3.91 (s, 3H), 3.80 (s, 3H), 3.78 (s, 3H), 3.19-3.35 (m, J=5.52 Hz, 2H). 13C NMR (101 MHz, DMSO-d6) δ 133.4 (Ar), 131.4 (Ar), 129.0 (Ar), 128.1 (Ar), 128.1 (Ar), 125.8 (Ar), 125.6 (Ar), 119.1 (Ar), 115.2 (Ar), 114.9 (Ar), 110.8 (Ar), 60.8 (OMe), 60.8 (OMe), 55.7 (OMe), 54.5 (α-C), 27.6 (β-C). HRMS (ESI): m/z calculated for C44H37N7O11 [M+H]+ 840.2624, found 840.2626 (deviation +0.2 ppm), tR=9.38 min.
1H NMR (500 MHz, DMSO-d6) δ 10.82 (br s, 1H), 10.59 (s, 1H), 9.61 (s, 1H), 8.79-8.84 (m, 1H), 7.97 (d, J=9.0 Hz, 2H), 7.88 (d, J=8.4 Hz, 2H), 7.80 (br d, J=8.9 Hz, 3H), 7.66-7.70 (m, 1H), 7.60-7.66 (m, 2H), 7.55 (d, J=8.9 Hz, 1H), 7.41-7.51 (m, 3H), 7.28 (d, J=16.5 Hz, 1H), 7.07 (d, J=16.5 Hz, 1H), 6.77-6.84 (m, 2H), 4.90-4.96 (m, 1H), 3.86 (s, 3H), 3.79 (s, 3H). 13C NMR (126 MHz, DMSO-d6) δ 130.7 (Ar—CH), 128.9, 128.4, 128.2, 125.9, 125.2, 125.0, 124.7 (CH—Ar), 124.4, 119.0 (Ar), 115.9 (Ar), 114.6 (Ar), 107.8 (Ar), 60.6 (OMe), 59.8 (OMe), 54.6 (α-C), 27.5 (β-C). HRMS (ESI): m/z calculated for C43H37N7O11 [M+H]+ 828.2624, found 828.2628 (deviation −0.4 ppm), tR=8.11 min.
1H NMR (400 MHz, DMSO-d6) δ 11.56 (br. s., 1H), 11.20 (s, 1H), 10.56 (s, 1H), 9.69 (s, 1H), 8.98 (d, J=7.53 Hz, 1H), 8.44 (d, J=2.01 Hz, 1H), 8.06 (d, J=8.78 Hz, 1H), 7.87-8.01 (m, 5H), 7.76-7.84 (m, 3H), 7.63-7.72 (m, 3H), 7.60 (d, J=5.52 Hz, 1H), 7.58 (d, J=5.52 Hz, 1H), 6.91 (d, J=8.78 Hz, 1H), 4.88-4.99 (m, 1H), 3.91 (s, 3H), 3.90 (s, 3H), 3.78 (s, 3H), 3.20-3.37 (m, 2H). 13C NMR (101 MHz, DMSO-d6) δ 150.4 (Ar), 142.0 (Ar), 131.5 (Ar), 128.7 (Ar), 126.0 (Ar), 125.9 (Ar), 119.2 (Ar), 115.2 (Ar), 111.2 (Ar), 110.9 (Ar), 60.8 (OMe), 54.7 (OMe), 54.3 (α-C), 54.0 (OMe), 27.1 (β-C). HRMS (ESI): m/z calculated for C43H36N8O11 [M+H]+ 841.2576, found 841.2584 (deviation +1.0 ppm), tR=8.63 min.
1H NMR (500 MHz, DMSO-d6) δ 11.52 (s, 1H), 11.17 (s, 1H), 10.52 (s, 1H), 9.99 (s, 1H), 9.66 (s, 1H), 8.92 (d, J=7.32 Hz, 1H), 8.06 (d, J=8.85 Hz, 1H), 7.98 (d, J=8.70 Hz, 2H), 7.91 (d, J=8.39 Hz, 2H), 7.75-7.84 (m, 3H), 7.56-7.64 (m, 4H), 7.41 (d, J=8.54 Hz, 2H), 6.82 (d, J=8.70 Hz, 2H), 4.89-4.99 (m, J=6.26 Hz, 1H), 3.92 (s, 3H), 3.79 (s, 3H), 3.21-3.41 (m, 2H). 13C NMR (126 MHz, DMSO-d6) δ 133.7 (Ar), 131.4 (Ar), 129.1 (Ar), 128.3 (Ar), 126.1 (Ar), 119.2 (Ar), 116.3 (Ar), 115.3 (Ar), 110.7 (Ar), 60.6 (OMe), 61.0 (OMe), 54.8 (α-C), 29.4 (β-C). HRMS (ESI): m/z calculated for C43H35N7O11 [M+H]+ 826.2467, found 826.2454 (deviation −1.6 ppm), tR=8.38 min.
1H NMR (400 MHz, DMSO-d6) δ 11.55 (s, 1H), 11.19 (s, 1H), 10.56 (s, 1H), 9.69 (s, 1H), 8.98 (d, J=7.53 Hz, 1H), 8.06 (d, J=9.03 Hz, 1H), 7.96 (dd, J=8.53, 15.56 Hz, 4H), 7.76-7.85 (m, 3H), 7.63-7.73 (m, 5H), 7.59 (dd, J=5.40, 8.91 Hz, 2H), 7.30 (t, J=8.91 Hz, 2H), 4.88-4.99 (m, 1H), 3.92 (s, 3H), 3.78 (s, 3H), 3.19-3.37 (m, 2H). 13C NMR (101 MHz, DMSO-d6) δ 134.2 (Ar), 132.7 (Ar), 129.4 (Ar), 128.1 (Ar), 126.1 (Ar), 125.8 (Ar), 119.1 (Ar), 116.5 (Ar), 115.3 (Ar), 110.6 (Ar), 60.8 (OMe), 60.6 (OMe), 54.7 (α-C), 27.6 (β-C). HRMS (ESI): m/z calculated for C43H34FN7O10 [M+H]+ 828.2424, found 828.2427 (deviation +0.4 ppm) tR=9.04 min.
1H NMR (500 MHz, DMSO-d6) δ 11.54 (br s, 1H), 11.17 (s, 1H), 10.58 (s, 1H), 9.67 (s, 1H), 8.86-8.91 (m, 1H), 8.02-8.08 (m, 1H), 7.97 (d, J=8.7 Hz, 2H), 7.93 (d, J=8.1 Hz, 2H), 7.77-7.87 (m, 8H), 7.75 (d, J=8.4 Hz, 2H), 7.69 (br s, 1H), 7.60-7.55 (m, 2H), 7.51 (d, J=13.9 Hz, 2H), 4.90-4.97 (m, 1H), 3.91 (s, 3H), 3.77-3.79 (m, 3H), 3.77-3.79 (m, 3H). 13C NMR (126 MHz, DMSO-d6) δ 133.1, 131.2 (Ar—CH), 129.8 (CH—Ar), 129.6 (Ar), 128.6 (Ar), 127.4 (Ar), 127.4 (Ar), 126.1 (Ar), 119.3 (Ar), 115.3 (Ar), 110.8 (Ar), 61.1 (OMe), 61.0 (OMe), 54.8 (α-C), 27.9 (β-C). HRMS (ESI): m/z calculated for C44H36N8O10 [M+H]+ 837.2627, found 837.2631 (deviation −0.4 ppm), tR=8.87 min.
1H NMR (400 MHz, DMSO-d6) δ 11.52 (s, 1H), 11.16 (s, 1H), 10.49 (s, 1H), 9.65 (s, 1H), 9.01-9.22 (m, 1H), 8.68-8.75 (m, 1H), 8.05 (d, J=8.8 Hz, 1H), 7.93-8.00 (m, 2H), 7.73-7.82 (m, 5H), 7.63-7.70 (m, 1H), 7.54-7.63 (m, 2H), 7.29 (d, J=8.0 Hz, 2H), 6.99 (d, J=8.5 Hz, 2H), 6.65 (d, J=8.3 Hz, 2H), 4.85-4.95 (m, 1H), 3.92 (s, 3H), 3.78 (s, 3H), 3.06-3.14 (m, 2H), 2.84-2.91 (m, 2H), 2.74-2.81 (m, 2H). 13C NMR (101 MHz, DMSO) δ 129.8 (Ar), 129.4 (Ar), 119.2 (Ar), 127.9 (Ar), 128.8 (Ar), 115.6 (Ar), 60.5 (Ar), 60.9 (Ar), 46.1 (CH2), 37.4 (CH2), 36.1 (CH2). HRMS (ESI): m/z calculated for C43H39N7O11 [M+H]+ 830.2780, found 830.2780 (deviation 0 ppm), tR=8.23 min.
1H NMR (400 MHz, DMSO-d6): δ 11.54 (s, 1H), 11.19 (s, 1H), 10.55 (s, 1H), 10.54 (s, 1H), 9.69 (s, 1H), 8.76 (d, J=7.53 Hz, 1H), 8.06 (d, J=9.03 Hz, 1H), 7.98 (dd, J=6.65, 8.16 Hz, 4H), 7.85-7.94 (m, 4H), 7.76-7.84 (m, 3H), 7.62-7.72 (m, 3H), 7.59 (dd, J=4.89, 8.91 Hz, 2H), 4.88-4.98 (m, 1H), 4.44 (s, 1H), 3.92 (s, 3H), 3.78 (s, 3H), 3.18-3.38 (m, 2H). (1H,13C)-HSQC NMR (400 MHz, DMSO-d6): δ 132.1 (Ar), 129.0 (Ar), 128.7 (Ar), 125.9 (Ar), 126.0 (Ar), 119.7 (Ar), 119.2 (Ar), 115.0 (Ar), 110.6 (Ar), 83.7 (alkyne), 61.0 (OMe), 60.5 (OMe), 54.4 (α-C), 27.7 (β-C); HRMS (ESI): m/z calculated for C44H36N8O11 [M+H]+ 853.2576, found 853.2585 (deviation +1.1 ppm), tR=8.34 min.
1H NMR (400 MHz, DMSO-d6): δ 11.52 (s, 1H), 11.17 (s, 1H), 10.64 (s, 1H), 10.52 (s, 1H), 9.67 (s, 1H), 8.75 (d, J=7.28 Hz, 1H), 8.16-8.25 (m, 4H), 8.06 (d, J=9.03 Hz, 1H), 7.88-8.01 (m, 6H), 7.75-7.85 (m, 3H), 7.70 (s, 1H), 7.60 (d, J=2.51 Hz, 1H), 7.58 (d, J=2.51 Hz, 1H), 4.88-4.98 (m, J=6.02 Hz, 1H), 3.92 (s, 3H), 3.78 (s, 3H), 3.21-3.36 (m, 2H). (1H,13C)-HSQC NMR (400 MHz, DMSO-d6): δ 129.2 (Ar), 129.1 (Ar), 128.7 (Ar), 127.2 (Ar), 126.2 (Ar), 126.0 (Ar), 119.9 (Ar), 119.2 (Ar), 115.1 (Ar), 110.6 (Ar), 60.9 (OMe), 60.5 (OMe), 54.5 (α-C), 27.7 (β-C); HRMS (ESI): m/z calculated for C43H36N12O11 [M+H]+ 897.2699, found 897.2725 (deviation +2.9 ppm), tR=7.35 min.
D-E-Isostere 16 was synthesized according to the following synthesis route:
The nitro aromat XII (17.0 g, 79.8 mmol, 1.0 eq.) was dissolved in MeOH/THF (1:1, 300 mL) and Pd/C (1.7 g, 10 wt % of nitro aromat XII) was added. The mixture was stirred under H2 atmosphere for 2 d. The reaction mixture was then filtrated through Celite and filter cake was washed with ethyl acetate. The filtrate was concentrated reduced pressure to obtain the product XII (13.4 g, 96%) without further purification.
1H NMR (500 MHz, DMSO-d6) δ 11.6 (s, 1H), 7.3 (d, J=8.7 Hz, 1H), 6.2 (d, J=8.7 Hz, 1H), 5.8 (s, 2H), 3.7 (s, 3H);
13C NMR (126 MHz, DMSO-d6) δ 172.9, 156.0, 148.5, 132.2, 126.6, 106.3, 101.6, 59.4;
HRMS (ESI): m/z calc. for C8H9NO4 [M+H]+: 184.0604; found 184.0612.
The mixture of the aniline (13.4 g, 73.0 mmol, 1.0 eq.), and 6 N aq. HCl (20 mL) in acetonitrile (80 mL) was cooled to −20° C. (EtOH/ice/N2-liquide). A solution of NaNO2 (12.6 g, 183 mmol, 2.5 eq.) in H2O (300 mL) was added dropwise and stirred for 20 min while doing the 2-Naphthol test. Then, a solution of KI (30.3 g, 183 mmol, 2.0 equiv) in H2O (350 mL) was added dropwise to the solution. After addition, the dark red solid was started to precipitate and the mixture was allowed to warm to room temperature and stirred for additional 2 h. To the solution was added Na2SO3. The Solvent was removed under reduced pressure. The resulting solid was filtered, washed with 1 N aq. HCl solution, and dried to obtain the product IXV (15.3 g, 71%) as a red-brown solid.
1H NMR (500 MHz, DMSO-d6) δ 7.33 (q, J=8.5 Hz, 2H), 3.78 (s, 3H);
13C NMR (126 MHz, DMSO-d6) δ 172.4, 154.7, 148.5, 128.3, 126.8, 115.1, 100.9, 60.2;
HRMS (ESI): m/z calc. for C8H7IO4 [M+H]+: 294.9462; found 294.9453.
A mixture of the literature known styrene XV (1.90 g, 11.4 mmol, 1.00 eq.), the halogenated benzoic acid IXV (3.41 g, 11.6 mmol, 1.02 eq.), triethanolamine (10 mL) and Pd(II)acetate (0.26 g, 1.14 mmol, 0.10 eq.) was stirred under argon at 100° C. for 24 h. The reaction was cooled to 25° C., quenched by the addition of dil. aq. hydrochloric acid (2 N, 30 mL) and diluted with EtOAc (300 mL). The resulting mixture was filtrated through Celite® and the filter cake washed with ethyl acetate. The organic phase was washed with 1 N HCl (2×) and Brine (1×), dried over Na2SO4 and evaporated. The crude product XVI was directly allyl protected without further purification.
The benzoic acid XVI was dissolved in DMF (dry, 20 mL), potassium iodide (0.19 g, 1.14 mmol, 0.10 eq.) and potassium carbonate (6.29 g, 45.5 mmol, 4.00 eq.) were added. The mixture was cooled to 0° C. and allyl bromide was added dropwise. After 16 h at 25° C. the reaction was quenched with water (10 mL) and extracted with Et2O (4×50 mL). The combined org. layers were dried over Na2SO4, filtered, and evaporated under reduced pressure. The crude product was purified by flash chromatography (1%→6% ethyl acetate in cyclohexane) to obtain XVII (2.81 g, 6.80 mmol, 60%) as bright yellow solid.
1H NMR (500 MHz, DMSO-d6) δ 8.32 (d, J=8.9 Hz, 2H), 8.05 (d, J=8.9 Hz, 2H), 7.70 (d, J=8.3 Hz, 1H), 7.54 (s, 1H), 7.08 (d, J=40.3 Hz, 1H), 6.10-6.00 (m, 2H), 5.44-5.35 (m, 2H), 5.26 (ddq, J=26.6, 10.4, 1.4 Hz, 2H), 4.79 (d, J=5.6 Hz, 2H), 4.54 (d, J=5.8 Hz, 2H), 3.87 (d, J=5.5 Hz, 3H).
19F NMR (471 MHz, DMSO) δ−112.99, −113.08.
13C NMR (126 MHz, DMSO-d6) δ 164.65, 151.72, 151.07, 147.74, 133.94, 132.42, 127.78, 125.73, 125.67, 125.37, 124.13, 118.31, 117.79, 102.92, 74.57, 65.38, 61.49.
HRMS (ESI): m/z calc. for C22H20FNO6 [M+H]+: 414.1347; found 414.1349.
Allylester XVIII (1.80 g, 4.35 mmol, 1.00 eq) was dissolved in THF (20 mL). A solution of LiOH (12.00 eq., 52.3 mmol, 1.25 g) in water (20 mL) was added. After 16 h at 25° C. the reaction O2N mixture was concentrated in vacuo and diluted with H2O (10 mL). The product was precipitated with 6 N HCl, filtered and washed with H2O. Compound XVIII was obtained as a light yellow solid (1.57 g, 4.21 mmol, 96%).
1H NMR (500 MHz, DMSO-d6) δ 8.31 (d, J=8.9 Hz, 2H), 8.04 (d, J=8.9 Hz, 2H), 7.65 (d, J=8.3 Hz, 1H), 7.48 (d, J=8.3 Hz, 1H), 7.07 (d, J=40.4 Hz, 1H), 6.08 (ddt, J=17.3, 10.8, 5.6 Hz, 1H), 5.38 (dq, J=17.2, 1.7 Hz, 1H), 5.22 (dt, J=10.4, 1.5 Hz, 1H), 4.53 (dd, J=5.6, 1.7 Hz, 2H), 3.86 (s, 3H).
19F NMR (471 MHz, DMSO) δ−113.48, −113.57.
13C NMR (126 MHz, DMSO) δ 167.08, 152.12, 151.41, 148.16, 134.65, 130.47, 128.02, 126.16, 126.10, 125.79, 124.90, 124.63, 118.01, 103.53, 103.47, 74.98, 61.96, 40.54, 40.45, 40.37, 40.28, 40.20, 40.11, 39.94, 39.78, 39.61, 39.44.
HRMS (ESI): m/z calc. for C19H16FNO6[M+H]+: 374.1034; found 374.1032.
To a solution of compound XVIII (272 mg, 0.72 mmol, 1.00 eq.) in CH2Cl2 (dry, 10 mL) was added oxalyl chloride (0.19 mL, 2.20 mmol, 3.00 eq.) and a catalytic amount of DMF (50 μL) at 0° C. The mixture was stirred 3 h at 25° C. The solution was concentrated under reduced pressure and the residue dissolved in CH2Cl2 (10 mL). Then literature known amine IXX (211 mg, 0.80 mmol, 1.10 eq.) and triethylamine (0.254 mL, 1.82 mmol, 2.50 eq.) were added. The mixture was stirred for 12 h at 25° C. shielded from light and then quenched with water (15 mL). The aqueous phase was extracted with CH2Cl2 (3×50 mL), the combined organic phases were washed with 2 N HCl (aq.), water, saturated NaHCO3 and brine, dried over Na2SO4, filtered and evaporated under reduced pressure. The residue was purified by column chromatography on silica gel (cyclohexane:ethyl acetate, 50:1→25:1→10:1) to obtain XX (196 mg, 0.32 mmol, 44%) as light yellow solid.
1H NMR (DMSO-d6, 400 MHz): δ 10.67 (s, 1H), 8.33 (dd, J=10.4, 8.3 Hz, 3H), 8.08 (d, J=9.0 Hz, 2H), 7.87-7.76 (m, 2H), 7.57 (d, J=8.8 Hz, 1H), 7.13 (d, J=40.3 Hz, 1H), 6.18-5.97 (m, 4H), 5.40 (ddt, J=17.2, 11.7, 1.7 Hz, 4H), 5.27 (ddt, J=14.9, 10.3, 1.5 Hz, 4H), 4.83-4.74 (m, 4H), 4.54 (dt, J=5.7, 1.4 Hz, 2H), 3.93 (dd, J=2.3, 0.6 Hz, 6H).
19F NMR (471 MHz, DMSO) δ−112.65, −112.73.
13C NMR aus HSQC_ed(101 MHz, DMSO) δ 124.45, 115.07, 125.92, 125.80, 125.92, 103.17, 133.11, 119.33, 75.37, 65.61, 74.83, 61.91.
HRMS (ESI): m/z calc. for C33H31FN2O9 [M+H]+: 619.2086; found 619.2083.
Compound XX (480 mg, 0.78 mmol, 1.00 eq.) was dissolved in a mixture of chloroform (45 ml) and acetic acid (5 ml) and cooled to 0° C. Zinc dust (1.01 g, 15.5 mmol, 20 eq.) was added portion wise. After 20 min the reaction was proven to be complete (verified by TLC-control). The solid was filtered and washed with CH2Cl2 (3×50 ml). The combined liquids were evaporated to dryness. The residue was taken up in CH2Cl2 (100 ml) and saturated aqueous NaHCO3—Solution (300 ml). The aqueous phase was further extracted twice with CH2Cl2 (2×50 ml). The combined organic fractions were washed successively with saturated aqueous NaHCO3—Solution (1×100 ml), distilled water (1×100 ml) and brine (1×100 ml), dried over Na2SO4 and evaporated to obtain XXI (420 mg, 0.71 mmol, 92%) as a yellow solid.
1H NMR (500 MHz, DMSO-d6) δ 10.69 (s, 1H), 8.33 (d, J=8.8 Hz, 1H), 7.79 (d, J=8.6 Hz, 1H), 7.71 (d, J=8.5 Hz, 1H), 7.57 (d, J=8.8 Hz, 1H), 7.44 (d, J=8.7 Hz, 2H), 6.64 (d, J=8.6 Hz, 2H), 6.46 (d, J=41.9 Hz, 1H), 6.14-6.03 (m, 3H), 5.73 (s, 2H), 5.43-5.37 (m, 3H), 5.29-5.20 (m, 3H), 4.80-4.76 (m, 4H), 4.54 (dt, J=5.7, 1.5 Hz, 2H), 3.92 (s, 3H), 3.88 (s, 3H).
19F NMR (471 MHz, DMSO-d6) δ−109.92, −110.01.
13C NMR (126 MHz, DMSO-d6) δ 164.43, 162.46, 151.06, 150.86, 149.74, 142.46, 136.51, 134.67, 133.94, 133.17, 132.84, 132.61, 127.51, 126.26, 126.25, 126.03, 125.97, 125.63, 120.27, 119.91, 118.11, 117.82, 114.78, 113.57, 79.15, 75.13, 74.53, 65.07, 61.18, 60.99.
HRMS (ESI): m/z calc. for C33H33FN2O7[M+H]+: 589.2345; found 589.2348.
Literature known Boc-b-(1-pivaloyloxymethyl)-1,2,3-triazol-4-yl)-Alanine (528 mg, 1.43 mmol, 2.00 eq.) was dissolved in THF (10 ml) and cooled to 0° C. N-Ethoxycarbonyl-2-ethoxy-1,2-dihydroqinoline (EEDQ) (1.49 g, 6.01 mmol, 3.00 eq) was added and after 5 minutes compound XXI (420 mg, 0.71 mmol, 1.00 eq.) was added. The reaction mixture was slowly warmed to room temperature and stirred for 32 h shielded from light. All volatiles were removed in vacuo and the residue was taken up in ethyl acetate (100 ml). The organic fraction was washed with saturated aqueous NaHCO3—Solution (3×50 ml) and brine (1×50 ml), dried over Na2SO4 and evaporated. The residue was purified via flash chromatography on silica gel (cyclohexane:ethyl acetate; 4:1→3:1→2:1→3:2) Compound XXIII (598 mg, 0.635 mmol, 89%) was obtained as a colorless solid.
1H NMR (500 MHz, DMSO-d6) δ 10.67 (s, 1H), 10.35 (s, 1H), 8.32 (d, J=8.7 Hz, 1H), 7.97 (s, 1H), 7.81 (d, J=8.5 Hz, 1H), 7.75 (d, J=11.7 Hz, 5H), 7.57 (d, J=8.7 Hz, 1H), 7.18 (d, J=8.0 Hz, 1H), 6.74 (d, J=41.1 Hz, 1H), 6.28 (s, 2H), 6.17-5.98 (m, 3H), 5.40 (dddd, J=17.2, 14.8, 3.5, 1.7 Hz, 3H), 5.30-5.23 (m, 3H), 4.82-4.76 (m, 4H), 4.54 (dt, J=5.7, 1.4 Hz, 2H), 4.40 (q, J=8.2, 7.7 Hz, 1H), 3.92 (d, J=11.4 Hz, 7H), 3.12 (dd, J=14.8, 5.1 Hz, 1H), 3.00 (dd, J=14.7, 9.4 Hz, 1H), 1.38 (d, J=17.2 Hz, 9H), 1.09 (s, 9H).
19F NMR (471 MHz, DMSO) δ−111.13, −111.22.
13C NMR from HSQC_ed (126 MHz, DMSO) δ 115.28, 124.41, 125.84, 125.71, 119.80, 126.70, 126.74, 97.80, 70.12, 133.86, 118.67, 119.11, 133.96, 119.38, 119.69, 75.67, 65.53, 75.00, 55.38, 61.50, 61.85, 63.57, 28.32, 28.63, 26.96.
HRMS (ESI): m/z calc. for C49H57FN6O12 [M+H]+: 941.4091; found 941.4092.
Tetrapeptide XXIII (378 mg, 0.401 mmol, 1.00 eq.) was dissolved in THF (5 ml), morpholine (0.70 mL, 8.03 mmol, 20.0 eq.) and tetrakis(triphenylphosphin)palladium (0) (186 mg, 0.160 mmol, 0.40 eq.) were added. The mixture was stirred for 2.5 h shielded from light. All volatiles were removed in vacuo and the residue was purified via column chromatography (2%→10% MeOH, 2% steps in CH2Cl2). Compound IXXV (290 mg, 0.353 mmol, 88%) was obtained as a white solid.
1H NMR (DMSO-d6, 500 MHz): δ 11.40 (s, 1H), 10.93 (s, 1H), 10.35 (s, 1H), 7.97 (s, 1H), 7.82 (d, J=8.6 Hz, 1H), 7.74 (s, 5H), 7.71 (d, J=7.7 Hz, 4H), 7.45 (dd, J=8.6, 5.6 Hz, 3H), 7.18 (d, J=8.1 Hz, 1H), 6.69 (d, J=41.2 Hz, 1H), 6.28 (s, 3H), 4.40 (dd, J=14.5, 7.8 Hz, 1H), 3.87 (s, 4H), 3.79 (s, 4H), 3.11 (d, J=12.0 Hz, 1H), 3.00 (dd, J=14.7, 9.4 Hz, 1H), 1.36 (s, 10H), 1.09 (s, 13H).
19F NMR (471 MHz, DMSO) δ−111.31, −111.40.
13C NMR from HSQC (DMSO-d6, 126 MHz): δ 124.40, 125.83, 125.74, 119.80, 108.31, 125.31, 119.94, 98.20, 70.12, 55.49, 60.04, 61.91, 70.36, 28.35, 28.63, 26.95.
HRMS (ESI): m/z calc. for C40H45FN6O12 [M+H]+: 821.3152, found 821.3149.
Tetrapeptide IXXV (120 mg, 0.146 mmol, 1.00 eq.) was dissolved in 4 N HCl in dioxane and stirred for 1 hour. The solvent was evaporated in vacuo and the product XXV (101 mg, 0.133 mmol, 91%) was obtained as white solid. Compound XXV was used in the next step without further characterization.
HRMS (ESI): m/z calc. for C35H37FN6O10 [M+H]+: 721.2628, found: 721.2623.
Preparation of compound XXVI
To a solution of commercially available benzaldehyde XXVI (1.0 eq, 205 mmol, 25.0 g) in propionic anhydride (209 mL, 1.64 mol, 8.00 eq.) was added NEt3 (200 mL, 1.43 mmol, 7.00 eq.). The reaction mixture XXVII was refluxed for 2 d at 160° C. Then conc. H2SO4 (60 mL) diluted with H2O (300 mL) was added slowly at 0° C. The yellow precipitate was filtered and dried in vacuo. The precipitate was dissolved in a THF/MeOH (200 mL) mixture and 3 N KOHaq. (100 mL) was added. After stirring 12 h at 25° C. the reaction mixture was filtered again, the filtrate was diluted with saturated K2CO3 (100 mL), the aqueous layer washed with ethyl acetate (4×100 mL) and then acidified with 6 N HClaq. (200 mL) to pH 1. The precipitate was filtered and dried in vacuo to obtain XXVII (24.1 g, 135 mmol, 66%) as colourless solid.
1H NMR (DMSO-d6, 500 MHz): d=12.25 (s, 1H), 9.80 (s, 1H), 7.51 (s, 1H), 7.34 (d, J=8.7 Hz, 2H), 6.82 (d, J=8.7 Hz, 2H), 2.02 (d, J=1.5 Hz, 3H).
13C NMR (DMSO-d6, 126 MHz): d=169.67, 157.90, 137.88, 131.61, 126.38, 125.02, 115.39, 13.93.
HRMS (ESI): m/z calc. for C10H10O3 [M−H]−: 177.0557, found: 177.0561.
To a suspension of compound XXVII (6.00 g, 168 mmol, 1.00 eq.) in pyridine (10.85 mL, 135 mmol, 4.0 eq.) was added acetic anhydride (15.9 mL, 168 mmol, 5.00 eq.). The reaction mixture was stirred at 100° C. for 12 h. All volatiles were removed in vacuo and the resulting oil was diluted with 1 N HClaq. The precipitate was filtered and dried in vacuo to obtain XXVIII (6.75 g, 30.6 mmol, 91%) as colorless solid.
1H NMR (400 MHz, DMSO-d6) δ 12.49 (s, 1H), 7.59 (d, J=1.7 Hz, 1H), 7.52 (d, J=8.5 Hz, 2H), 7.19 (d, J=8.6 Hz, 2H), 2.28 (s, 3H), 2.03 (d, J=1.5 Hz, 3H).
13C NMR (101 MHz, DMSO) δ 169.31, 169.11, 150.31, 136.75, 133.11, 130.84, 128.69, 122.15, 121.95, 20.87, 13.90.
HRMS (ESI): m/z calc. for C12H12O4[M−H]−: 219.0663, found: 219.0659.
Compound XXVIII (4.33 g, 18.1 mmol, 1.00 eq.) was dissolved in thionyl chloride (20 mL), a catalytic amount of DMF (100 μL) was added. The mixture was stirred 2 h at 120° C. The solution was concentrated under reduced pressure and the residue dissolved in THF (20 mL). Then literature known amine IXXX (2.97 g, 19.7 mmol, 1.00 eq.) and triethylamine (7.42 mL, 54.4 mmol, 3 eq.) in THF (10 mL) were added to the above solution. The mixture was stirred for 12 h at 25° C. shielded from light. All volatiles were removed in vacuo. The residue was dissolved in CH2Cl2 and washed with 2 N HCl (aq.), water, saturated NaHCO3 and brine, dried over Na2SO4, filtered, and evaporated under reduced pressure to obtain XXX (5.10 g, 14.4 mmol, 73%) as colorless solid.
1H NMR (DMSO-d6, 500 MHz): d=10.26 (s, 1H), 7.94 (d, J=8.8 Hz, 2H), 7.88 (d, J=8.9 Hz, 2H), 7.53 (d, J=8.5 Hz, 2H), 7.34 (s, 1H), 7.22 (d, J=8.6 Hz, 2H), 3.83 (s, 3H), 2.29 (s, 3H), 2.13 (d, J=1.4 Hz, 3H).f
13C NMR (DMSO-d6, 126 MHz): d=169.09, 168.63, 165.84, 150.04, 143.78, 133.23, 132.84, 130.57, 130.05, 124.01, 121.92, 119.37, 51.85, 20.86, 14.43.
HRMS (ESI): m/z calc. for C20H19NO5 [M+H]+: 354.1336, found: 354.1332.
Methylester XXX (5.00 g, 14.2 mmol, 1.00 eq.) was dissolved in a THF/MeOH (40 mL) mixture. A solution of LiOH (1.69 g, 70.8 mmol, 5.00 eq.) in water (20 mL) was added. After 12 h at 25° C. the reaction mixture was concentrated in vacuo and diluted with H2O (10 mL). The product was precipitated with 6 N HCl, filtered and washed with H2O. Compound XXXI (3.91 g, 14.5 mmol, 93%) was obtained as a light yellow solid.
1H NMR (DMSO-d6, 500 MHz): d=12.66 (s, 1H), 10.17 (s, 1H), 9.82 (s, 1H), 7.91 (d, J=8.9 Hz, 2H), 7.86 (d, J=8.9 Hz, 2H), 7.35 (d, J=8.7 Hz, 2H), 7.28 (s, 1H), 6.86 (d, J=8.6 Hz, 2H), 2.11 (d, J=1.5 Hz, 3H).
13C NMR (DMSO-d6, 126 MHz): d=n.d.
HRMS (ESI): m/z calc. for C17H15NO4 [M+H]+: 298.1074, found: 298.1071.
Compound XXXI (5.00 g, 16.8 mmol, 1.00 eq.), EDC*HCl (3.92 mmol, 25.2 mmol, 1.50 eq.) and DIPEA (7.40 mL, 42.6 mmol, 2.53 eq.) were dissolved in THF (30 mL). After 1 min at 25° C., pentachlorophenol (4.70 g, 17.7 mmol, 1.05 eq.) was added and resulting the reaction mixture was stirred for another 16 h at 25° C. Afterwards, the solution was dissolved with EtOAc (50 mL) and washed with H2O (2×30 mL), 10% KHSO4 (2×30 mL) and brine (1×30 mL). All volatiles were removed in vacuo and the reaction mixture was diluted with cold Et2O/hexane (4:1, 30 mL), the formed precipitate was filtered, and washed with Et2O. Active ester XXXII was obtained as a colorless solid (6.21 g, 11.4 mmol, 67%).
1H NMR (400 MHz, DMSO-d6) δ 10.37 (s, 1H), 9.81 (s, 1H), 8.17 (d, J=8.8 Hz, 2H), 8.01 (d, J=8.8 Hz, 2H), 7.37 (d, J=8.7 Hz, 2H), 7.31 (s, 1H), 6.85 (d, J=8.6 Hz, 2H), 2.13 (d, J=1.3 Hz, 3H).
13C NMR (DMSO-d6, 126 MHz): d=n.d.
HRMS (ESI): m/z calc. for C23H14C15NO4 [M+H]+: 545.9409, found: 545.9392.
Compound XXV (110 mg, 0.145 mmol, 1.00 eq) was dissolved in DMF (2 ml) and triethylamine (0.20 mL, 1.45 mmol, 10.0 eq.) was added. After adding the active ester (95.1 mg, 0.174 mmol, 1.20 eq.), the mixture was stirred for 32 h shielded from light. All volatiles were removed in vacuo. Then cooled to 0° C. and 3 N KOH(aq) (1 ml) was added dropwise. After 15 min of stirring, 550 μl of 6 N HCl(aq) were added dropwise. The resulting mixture was evaporated to dryness. The residue was purified via prep HPLC. Compound 2 (21 mg, 0.021 mmol, 14%) was obtained as a white fluffy solid.
1H NMR (700 MHz, DMSO-d6): δ 11.58 (s, 1H), 11.41 (s, 1H), 11.24 (s, 1H), 10.47 (s, 1H), 10.08 (s, 1H), 9.77 (s, 1H), 8.68 (d, J=7.7 Hz, 1H), 8.08 (d, J=8.8 Hz, 1H), 7.88-7.85 (m, 2H), 7.85-7.73 (m, 7H), 7.68 (s, 1H), 7.60 (d, J=8.9 Hz, 1H), 7.48 (d, J=8.3 Hz, 1H), 7.35 (d, J=8.7 Hz, 2H), 7.26 (s, 1H), 6.84 (d, J=8.4 Hz, 2H), 6.70 (d, J=41.2 Hz, 1H), 4.90 (q, J=7.8, 7.4 Hz, 1H), 3.92 (s, 3H), 3.80 (s, 3H), 3.29 (dd, J=14.7, 5.6 Hz, 1H), 3.23 (dd, J=14.8, 9.1 Hz, 1H), 2.11 (s, 3H).
(1H,13C)-HSQC NMR (176 MHz, DMSO) δ 110.56, 128.68, 119.54, 126.20, 128.74, 119.52, 119.83, 125.81, 126.19, 120.28, 131.78, 134.38, 115.84, 98.13, 98.10, 54.64, 60.66, 62.05, 27.80, 15.02.
HRMS (ESI): m/z [M+H]+ calcd. for C46H40FN7O11: 886.2843, found 886.2854, tR=8.64 min.
The following compounds are obtained in an analog synthesis procedures.
1H NMR (700 MHz, DMSO-d6) δ 11.71 (s, 1H), 11.12 (s, 1H), 10.44 (s, 1H), 10.05 (s, 1H), 9.76 (s, 1H), 8.48 (d, J=2.8 Hz, 1H), 8.44 (d, J=8.1 Hz, 1H), 8.17 (d, J=8.7 Hz, 1H), 8.11 (d, J=8.9 Hz, 1H), 8.02 (q, J=9.2, 8.1 Hz, 1H), 7.87 (d, J=8.8 Hz, 1H), 7.79 (s, 4H), 7.71 (dd, J=8.7, 2.9 Hz, 1H), 7.59 (d, J=8.8 Hz, 1H), 7.34 (d, J=8.3 Hz, 2H), 7.25 (s, 1H), 6.83 (d, J=8.3 Hz, 2H), 4.64 (h, J=6.7, 6.2 Hz, 1H), 4.34 (dd, J=10.1, 6.2 Hz, 1H), 4.30 (dd, J=10.1, 5.4 Hz, 1H), 3.91 (s, 3H), 3.85 (s, 3H), 3.17 (dd, J=14.8, 5.7 Hz, 1H), 3.10 (dd, J=14.9, 8.4 Hz, 1H), 2.10 (s, 3H); (1H,13C)-HSQC (176 MHz, DMSO) δ 137.19, 123.63, 110.12, 110.37, 126.42, 118.94, 127.89, 122.28, 125.62, 131.24, 133.79, 115.30, 48.49, 69.67, 60.09, 60.72, 26.48, 14.44; HRMS (ESI): m/z [M+H]+ calcd. for C44H40N8O12: 873.2838, found 873.2842, tR=8.21 min.
1H NMR (500 MHz, DMSO-d6): δ 10.58 (s, 1H), 10.11 (s, 1H), 9.78 (s, 1H), 9.61 (s, 1H), 8.72 (d, J=7.28 Hz, 1H), 8.16-8.25 (m, 3H), 7.85-7.92 (m, 5H), 7.82 (d, J=7.28, 2H) 7.77 (d, J=7.28, 1H), 7.68-7.72 (m, 2H), 7.60 (d, J=8.9 Hz, 1H), 7.36 (d, J=8.9 Hz, 2H), 7.27 (s, 1H), 6.85 (d, J=8.4 Hz, 2H), 4.95-4.90 (m, 1H), 3.92 (s, 3H), 3.31-3.27 (m, 1H), 3.28-3.26 (m, 1H), 2.12 (s, 3H). (1H,13C)-HSQC NMR (126 MHz, DMSO-d6): δ 128.20, 119.79, 128.62, 119.57, 128.58, 112.87, 125.35, 131.76, 134.41, 115.88, 54.79, 60.60, 46.02, 15.02; HRMS (ESI): m/z calculated for C44H37N9O9 [M+H]+ 836.27, found 836.28, tR=6.50 min.
1H NMR (700 MHz, DMSO-d6): 1H NMR (500 MHz, DMSO-d6) δ 11.59 (s, 1H), 11.38 (s, 1H), 11.23 (s, 1H), 10.32 (s, 1H), 10.07 (s, 1H), 9.75 (s, 1H), 8.65 (d, J=7.8 Hz, 1H), 8.07 (d, J=8.9 Hz, 1H), 7.87 (d, J=8.9 Hz, 2H), 7.81 (dd, J=8.7, 7.1 Hz, 3H), 7.69 (d, J=8.5 Hz, 2H), 7.65-7.58 (m, 3H), 7.40 (d, J=8.8 Hz, 1H), 7.39-7.33 (m, 3H), 7.33-7.26 (m, 2H), 6.85 (d, J=8.7 Hz, 2H), 4.91 (q, J=7.8 Hz, 1H), 3.92 (s, 3H), 3.80 (s, 3H), 3.25 (td, J=14.6, 14.1, 7.3 Hz, 2H), 2.12 (d, J=1.4 Hz, 3H); (1H,13C)-HSQC (126 MHz, DMSO) δ 110.64, 128.60, 119.42, 126.03, 119.87, 127.92, 126.03, 115.85, 131.82, 134.40, 115.85, 54.54, 60.64, 61.97, 14.99; HRMS (ESI): m/z [M+H]+ calcd. for C46H41N7O11: 868.2937, found 868.2943, tR=8.43 min.
1H NMR (700 MHz, DMSO-d6): 1H NMR (700 MHz, DMSO-d6) δ 11.59 (s, 1H), 11.55 (s, 1H), 11.26 (s, 1H), 10.45 (s, 1H), 10.07 (s, 1H), 9.77 (s, 1H), 8.68 (d, J=7.6 Hz, 1H), 8.08 (d, J=8.9 Hz, 1H), 7.86 (d, J=8.3 Hz, 2H), 7.79 (dd, J=20.1, 8.1 Hz, 3H), 7.73 (d, J=8.3 Hz, 2H), 7.67 (s, 1H), 7.58 (dd, J=20.2, 8.6 Hz, 3H), 7.35 (d, J=8.1 Hz, 2H), 7.26 (s, 1H), 7.13 (d, J=8.4 Hz, 1H), 6.84 (d, J=8.1 Hz, 2H), 4.89 (q, J=7.6 Hz, 1H), 3.99 (s, 3H), 3.92 (s, 3H), 3.24-3.20 (m, 2H), 2.11 (s, 3H); (1H,13C)-HSQC 13C NMR (176 MHz, DMSO) δ 110.46, 128.66, 128.51, 119.51, 126.02, 119.84, 126.21, 132.65, 131.77, 134.33, 123.50, 115.84, 54.68, 61.57, 60.64, 15.01;
HRMS (ESI): m/z [M+H]+ calcd. for C46H39N7O11: 866.2780, found 866.2771, tR=8.06 min.
1H NMR (700 MHz, DMSO-d6) δ 14.64 (s, 1H), 11.70 (s, 1H), 11.21 (s, 1H), 10.48 (s, 1H), 9.00 (d, J=7.7 Hz, 1H), 8.16 (s, 1H), 7.97 (d, J=8.2 Hz, 2H), 7.95-7.90 (m, 4H), 7.78 (dd, J=8.2, 6.3 Hz, 3H), 7.72 (d, J=8.4 Hz, 2H), 7.69-7.64 (m, 2H), 7.60-7.54 (m, 3H), 7.43-7.40 (m, 1H), 4.96 (d, J=8.5 Hz, 1H), 3.92 (s, 3H), 3.83 (s, 3H), 3.25 (d, J=14.3 Hz, 2H); (1H,13C)-HSQC (176 MHz, DMSO) δ 102.25, 128.51, 133.09, 126.80, 132.77, 132.05, 122.07, 132.62, 117.17, 126.08, 107.89, 127.16, 116.39, 54.82, 60.55, 60.24, 28.13, 29.39, 9.06; HRMS (ESI): m/z [M+H]+ calcd. for C45H33N7O10: 832.2362, found 832.2354, tR=9.82 min.
1H NMR (DMSO-d6, 500 MHz): δ 11.74 (s, 1H), 11.60 (br. s, 1H), 11.13 (s, 1H), 10.88 (s, 1H), 10.49 (s, 1H), 10.00 (s, 1H), 8.99 (d, J=2.0 Hz, 1H), 8.78 (d, J=7.45 Hz, 1H), 8.35 (dd, J=8.6, 2.1 Hz, 1H), 8.21 (d, J=8.6 Hz, 1H), 8.12 (d, J=9.3 Hz, 1H), 8.00-7.87 (m, 4H), 7.76 (d, J=8.9 Hz, 2H), 7.70 (br. s, 1H), 7.60 (d, J=8.9 Hz, 1H), 6.62 (d, J=8.4 Hz, 2H), 4.94-4.93 (m, 1H), 3.92 (s, 3H), 3.88 (s, 3H), 3.34-3.31 (m, 1H), 3.28-3.26 (m, 1H). (1H,13C)-HSQC (176 MHz, DMSO) δ 139.97, 117.02, 127.77, 123.45, 131.80, 110.67, 110.83, 119.89, 128.67, 119.47, 130.10, 111.80, 126.20, 127.98, 113.23, 54.73, 63.80, 57.72, 60.71, 61.21, 64.18, 58.17, 60.52, 60.52, 70.18, 27.61; HRMS (ESI): m/z calculated for C41H36N10O11 [M+H]+ 845.26, found 845.26, tR=7.10 min.
1H NMR (DMSO-d6, 500 MHz): δ 11.67 (s, 1H), 11.66 (br. s, 1H), 11.12 (s, 1H), 10.89 (s, 1H), 10.49 (s, 1H), 10.36 (s, 1H), 8.99 (d, J=2.0 Hz, 1H), 8.98 (d, J=7.45 Hz, 1H), 8.36 (dd, J=8.6, 2.1 Hz, 1H), 8.21 (d, J=8.6 Hz, 1H), 8.17 (s, 1H), 8.12 (d, J=9.3 Hz, 1H), 8.08 (d, J=8.4 Hz, 2H), 8.06 (d, J=8.4 Hz, 1H), 7.89-7.86 (m, 2H), 7.74 (br. s, 1H), 7.71 (d, J=8.9 Hz, 1H), 7.60 (d, J=8.9 Hz, 1H), 7.01 (d, J=8.4 Hz, 2H), 4.98-4.97 (m, 1H), 3.92 (s, 3H), 3.88 (s, 3H), 3.34-3.31 (m, 1H), 3.28-3.26 (m, 1H). (1H,13C)-HSQC (126 MHz, DMSO) δ 139.97, 127.77, 123.43, 110.76, 129.76, 110.82, 126.87, 126.17, 116.62, 54.92, 60.67, 61.27, 27.75; HRMS (ESI): m/z calculated for C41H34N10O11 [M+H]+ 843.24, found 843.24, tR=6.50 min.
E. coli DSM 1116; S. typhimurium TA100; Bacillus subtilis DSM10; and Micrococcus luteus DSM1790
The tests were performed using the micro dilution method.
The determination of MIC values was performed according to the ninth edition of the Approved Standard M07-A9 (CLSI. Methods for Dilution Antimicrobial Susceptibility Tests for Bacteria That Grow Aerobically; Approved Standard-Ninth Edition. CLSI document M07-A9. Wayne, PA: Clinical and Laboratory Standards Institute; 2012.)
The test was carried out for four different bacterial strains (E. coli DSM 1116 [gram negative], B. subtilis DSM 10 [gram positive], M. luteus DSM 1790 [gram positive], S. typhimurium TA100 [gram negative]). 20 μL of cryo stock of each strain were inoculated in 20 mL of LB media (Lysogeny broth: 10 g/L peptone, 5 g/L yeast extract, 5 g/L NaCl) followed by incubation over night at 37° C., 200 rpm. The test inoculum was adjusted by the 0.5 McFarland Standard (OD625 from 0.08 to 0.1). Within 15 min of preparation, the adjusted inoculum suspension was diluted in MHBII media (BBL TM Mueller-Hinton Broth II, Becton, Dickinson and Company, New Jersey/USA) so that each well contained approximately 5×105 CFU/mL in a final volume of 100 μL. 95 μL of the inoculum were applied per well and 5 μL of the (diluted) antibiotic substance were added.
Previously the dry antibiotic compounds were dissolved in DMSO (100%) with a concentration of 2560 μg/mL and the resulting stock solutions were further diluted in DMSO (100%). 5 μL of each antibiotic dilution were applied to the microdilution tray to reach final concentrations of 64 μg/mL to 0.008 μg/mL. One row of each well plate was left as a growth control without antibiotic substances and another row of the microdilution tray was used as sterility control (only MHB II-media). The antimicrobial effect of the solvent (DMSO) was tested by adding 5 μL DMSO to several wells without antibiotics. Purity check and cell titer control were performed according to International Standard M07-A9 on Mueller-Hinton II Agar (Mueller Hinton II Broth, 15 g/L agar-agar). Both microdilution trays and agar plates were incubated at 37° C. for 20 h and subsequently analyzed visually.
The results are summarized in table 1. The potency of an antibiotic is determined by the minimum inhibitory concentration (MIC). Contrary to intuition, a particularly low value is equated with a high potency.
E. coli
E. coli
S. typhimurium
B. subtilis
M. luteus
M. phlei
Table 1 also shows the MIC values of ciprofloxacin (CIP a fluoroquino-lon), the gold standard of antibiotics, which has been tested in direct comparison. Furthermore, Compound 0 is a lead structure that has been optimized up to this point, and further modifications have been made to the template.
| Number | Date | Country | Kind |
|---|---|---|---|
| 20197770.9 | Sep 2020 | EP | regional |
This application is a National Phase Patent Application of International Patent Application Number PCT/EP2021/076061, filed on Sep. 22, 2021, which claims priority of European Patent Application Number 20 197 770.9, filed on Sep. 23, 2020. The disclosure relates to albicidin derivatives, in particular to amide bond isostere derivatives of albicidin.
| Filing Document | Filing Date | Country | Kind |
|---|---|---|---|
| PCT/EP2021/076061 | 9/22/2021 | WO |
