.alpha.-L-arabinofuranosidase and xylanase from Bacillus stearothermophilus NCIMB 40221, NCIMB 40222 or mutant thereof for delignification

SUMMARY OF THE INVENTION
The invention relates to a preparation exhibiting enzymatic activity, which preparation has the capability of delignifying wood pulp at a temperature of at least 65.degree. C. and a pH of at least 9. Further, the invention relates to a method of producing said preparation by aerobically fermentating a selected Bacillus stearothermophilus strain. Furthermore, the invention relates to two isolated Bacillus stearothermophilus strains and mutants and variants thereof. The invention also relates to applications of the preparation of the invention, namely to a process comprising treatment of wood pulp with a preparation according to the invention, and a wood pulp and a fluff pulp treated with a preparation according to the invention, and also a paper, a board and a fluff made from a wood pulp treated with a preparation according to the invention.
BACKGROUND OF THE INVENTION
In the pulp and paper industry major efforts are made to reduce the use of chemicals in delignification and bleaching processes, since such chemicals, and especially organic chlorine compounds, in the effluent from bleach plants, give rise to environmental pollution.
One approach to reduce the use of chemicals in pulping and bleaching has been concerned with the use of lignin-degrading microorganisms. Lignin-degrading or lignin-modifying enzymes have also been suggested. A comprehensive review of lignin biodegradation has been published in Critical Reviews.RTM. in Biotechnology, Vol. 6, Issue 1, 1987, pp. 1-60, Ed. Stewart, G. G. and Russell, I., CRC Press, Inc. Boca Raton, Fla.
Another approach has been concerned with removal of lignin by using hemicellulases to break hemicellulose bonds. A review article entitled "Hemicellulases: Their Occurrence, Purification, Properties, and Mode of Action," by Dekker, R. F. H. and Richards, G. N. has been published in Advances in Carbohydrate Chemistry and Biochemistry, Vol. 32, 1976, pp. 277-352.
Among the hemicellulases, xylanases are the ones that have attracted most attention for use in biopulping and biobleaching. FR 2 557 894-A1 discloses treatment of paper pulp with an enzymatic solution which does not have any cellulase activity and which contains xylanase. The treatment is effected at 20.degree.-60.degree. C., especially 40.degree. C., and Example 6 reveals that the pH should be 5. However, the paper and pulp industry would be interested in treating wood pulp at higher temperatures and higher pHs for economical reasons and convenience, since some established bleaching processes are conducted at temperatures exceeding 65.degree. C. and pH exceeding 9.
International patent publication number WO 91/18976 discloses .alpha.-L-arabinofuranosidase obtained from B. stearothermophilus. However, the molecular weight data for .alpha.-L-arabinofuranosidase is not disclosed and it would appear that different strains of B. stearothermophilus were used. More particularly, WO 91/18976 discloses the molecular weight ranges for xylanase obtained from B stearothermophilus as 18000-38000, whereas the molecular weight of the xylanase obtained by applicants is 4 1000 to 42000.
To our knowledge, no one has reported treatment of wood pulp with a preparation exhibiting enzymatic activity and having the capability of delignifying wood pulp at a temperature of at least 65.degree. C. and a pH of at least 9.

DESCRIPTION OF THE INVENTION
The present invention provides a preparation exhibiting enzymatic activity, which preparation has the capability of delignifying wood pulp at a temperature of at least 65.degree. C. and a pH of at least 9.
In the present specification and the appended claims, the expression "wood pulp" is to be interpreted broadly, and thus it is intended to comprise all kinds of lignocelhlosic materials.
One aspect of the invention is directed to a preparation exhibiting enzymatic activity, which preparation is obtainable by aerobic fermentation, in a suitable medium, of a Bacillus stearothermophilus strain selected from the deposited strains NCIMB 40221 and NCIMB 40222 and mutants and variants thereof having substantially the same capability of producing said preparation as said strains NCIMB 40221 and NCIMB 40222, said preparation having the capability of delignifying wood pulp at a temperature of at least 65.degree. C. and a pH of at least 9. In one embodiment of this aspect of the invention, the preparation is obtainable by aerobic fermentation, in a suitable medium comprising glucose as the carbon source, of a mutant strain of the Bacillus stearothertnophilus strain NCIMB 40222. In another embodiment, the preparation is obtainable by aerobic fermentation, in a suitable medium comprising L-arabinose as the carbon source, of a mutant strain of the B. stearothermophilus strain NCIMB 40222.
In another embodiment the preparation according to the invention comprises an enzyme (xylanase) including the amino acid sequence I.D. No. (1): ##STR1## or a homologue thereof, the entire enzyme exhibiting enzymatic activity in a wood pulp medium. In this context, a homologue of said amino acid sequence is a homologous sequence having some amino acid substitutions, extensions or deletions which do not lead to the elimination of the enzymatic activity of the entire enzyme in a wood pulp medium. Further, a homologue of said amino acid sequence is any sequence which is sufficiently homologous on the nucleotide level to be recognized by any DNA or RNA probe derived from said sequence.
In another embodiment of the invention, the preparation according to the invention comprises an enzyme, .alpha.-L-arabinofuranosidase (AF), including the amino acid sequence I.D. No. (2) ##STR2## or a homologue thereof, the entire enzyme exhibit enzymatic activity in a wood pulp medium. (A homologue, in this context, of said amino acid sequence is a homologous sequence having some amino acid substitutions, extensions or deletions, which do not lead to the elimination of the enzymatic activity of the entire enzyme in a wood pulp medium. Further, a homologue of said amino acid sequence is any sequence which is sufficiently homologous on the nucleotide level to be recognized by any DNA or RNA probe derived from said sequence.)
In still another embodiment of this aspect of the invention, the preparation is a clarified culture broth. In yet another embodiment of this aspect of the invention, the preparation is a partially purified fraction of the culture broth exhibiting enzymatic activity in a wood pulp medium. The partially purified fraction is obtainable by ammonium sulphate precipitation. In a further embodiment of this aspect of the invention, the preparation is a highly purified fraction of the clarified culture broth which is obtainable by the use of a cation or anion exchanger, said fraction being in the form of a xylanase or an .alpha.-L-arabinofuranisodase exhibiting enzymatic activity in a wood pulp medium. In one particular embodiment, the xylanase has an approximate molecular weight between 41000 and 42000 Dalton determined by SDS PAGE and gel filtration and the following approximate amino acid composition determined as amino acid residues per molecule by amino acid analysis: Asx 58; Thr 12; Ser 10; Glx 44; Pro 24; Gly 20; Ala 30; Cys 1; Val 28; Met 2;.Ile 26; Leu 14 ; Tyr 22; Phe 16; Lys 38; His 6; Arg 12.
In another particular embodiment, the .alpha.-L-arabinofuranosidase has an approximate molecular weight of 128,000 and consists of two identical sub-units of 64,000 molecular weight (MW). (The native enzyme is of 128,000 MW as judged by SDS gel.)
Another aspect of the invention is directed to a method of producing a preparation exhibiting enzymatic activity, whereby a Bacillus stearothermophilus strain selected from the strains NCIMB 40221 and NCIMB 40222 and mutants and variants thereof having substantially the same capability of producing said preparation as said strains NCIMB 40221 and NCIMB 40222, is subjected to aerobic fermentation in a suitable medium, said preparation having the capability of delignifying wood pulp at a temperature of at least 65.degree. C. and a pH of at least 9.
In a particular embodiment of the method according to the invention, a mutant strain of the Bacillus stearothermophilus strain NCIMB 40222 is subjected to aerobic fermentation in a suitable medium comprising glucose as the carbon source. In another embodiment of this aspect of the invention the fermentation broth is clarified, optionally by centrifugation. In yet another embodiment the clarified fermentation broth is subjected to ammonium sulphate precipitation, and optionally resuspension in a liquid medium, to yield a partially purified fraction of said clarified culture broth exhibiting enzymatic activity in a wood pulp medium at a temperature of at least 65.degree. C. and a pH of at least 9. In a further embodiment of the method according to the invention, the clarified fermentation broth is purified and concentrated using a cation exchanger, to yield a highly purified fraction in the form of a xylanase exhibiting enzymatic activity in a wood pulp medium at a temperature of at least 65.degree. C. and a pH of at least 9.
In another particular embodiment of the method according to the invention, a strain of Bacillus stearothermophilus NCIMB 40222 is subjected to aerobic fermentation in a suitable medium comprising L-arabinose as the carbon source. The fermentation broth may be clarified, optionally by centrifugation. The clad fled fermentation broth may be further subjected to precipitation, and optionally resuspension in a liquid medium, to yield a partially purified fraction of said clarified culture broth exhibiting enzymatic activity in a wood pulp medium at a temperature of at least 65.degree. C. and a pH of at 1east 9. The clarified fermentation broth may be purified and concentrated using an anion exchanger, to yield a highly purified fraction in the form of .alpha.-L-arabinofuranosidase exhibiting enzymatic activity in a wood pulp medium at a temperature of at least 65.degree. C. and a pH of at least 9.
Yet another aspect of the invention is directed to the isolated Bacillus stearothermophilus strains NCIMB 40221 and NCIMB 40222 and mutants and variants thereof, said mutants and variants having substantially the same capability of producing a preparation exhibiting enzymatic activity as said strains NCIMB 40221 and NCIMB 40222, said preparation having the capability of delignifying wood pulp at a temperature of at least 65.degree. C. and a pH of at least 9.
Still another aspect of the invention is directed to a process comprising treatment of wood pulp, whereby wood pulp is treated in at least one step with a preparation according to the invention. In one embodiment of this aspect of the invention, the wood pulp to be treated is sulphate pulp. In another embodiment the sulphate pulp to be treated is a partially delignified sulphate pulp. In yet another embodiment of this aspect of the invention the partially delignified sulphate pulp to be treated is an oxygen-delignified sulphate pulp. The process comprising treatment of wood pulp is suitably effected at a temperature of at least 65.degree. C. in a medium having a pH of at least 9.
An additional aspect of the invention is directed to products obtained from wood pulp which has been treated in at least one step with a preparation according to the invention. Thus, this aspect of the invention comprises wood pulp and fluff pulp which have been treated in at least one step with a preparation according to the invention, and paper, board and fluff that have been made from wood pulp which has been treated in at least one step with a preparation according to the invention.
A further aspect of the invention is directed to a DNA or RNA probe which recognizes the nucleotide sequence coding for the amino acid sequence I.D. No. (1), or which recognizes the nucleotide sequence coding for the amino acid sequence I.D. (2).
Additionally, one aspect of the invention is directed to an antibody which binds to the amino acid sequence I.D. No. (1), or to an antibody which binds to the amino acid sequence I.D. No. (2).
These last two aspects of the invention are useful in the finding of enzymes having the capability of delignifying wood pulp at a temperature of at least 65.degree. C. and a pH of at least 9.
Isolation of thermostable enzyme producing organisms
The source of the organisms was water and mud samples taken from the water treatment pools at the pulp and paper mill of Korsnas, Gavle, Sweden. The enrichment medium (XM) contained 0.01% yeast extract, 0.04% tryptone and 0.2% xylan at pH 7.0. The same medium at pH 8.1 and 9.6 contained in addition Na.sub.2 CO.sub.3. Water and mud samples were added to the XM media and were cultivated aerobically at 65.degree. C. Samples from the cultures were transferred to fresh media every 2-3 days. Following 4 transfers, samples from the cultures were diluted and spread on XM agar plates (XM containing 2% agar).
Following three independent enrichment procedures, 30 strains were isolated that were able to grow on XM agar plates at 65.degree. C. No isolates were obtained from the XM medium at pH 9.6. Out of the 30 isolates,. 10 produced clear zones around the colony suggesting that they produce an extracellular xylanase. Two out of these ten isolates (strains T2 and T6) were selected for deposition.
Deposition of microorganisms
Two strains, namely Bacillus sp T2 and Bacillus sp T6 were deposited under the Budapest Treaty at the National Collections of Industrial and Marine Bacteria Ltd. (NCIMB), Aberdeen, on Nov. 8, 1989. The accession numbers given were NCIMB 40221 and NCIMB 40222 for the strains T2 and T6, respectively.
Identification of Strains T2 and T6
The strains T2 and T6 are aerobic, gram positive, spore forming rods capable of growing at 65.degree. C. These strains are considered to be different strains of Bacillus stearothermophilus by NCIMB, based on the following test results:
______________________________________Bacillus - second stage testsIsolate No. T2 (NCIMB 40221) T6 (NCIMB 40222)Tests at .degree. C. 60.degree. C. 60.degree. C.______________________________________Spore shape.sup.a E ESporangium distended --/ --distinctlySpore position T Tdominant.sup.bAnaerobic growth -- --Growth in 5% NaCl -- --Growth in 7% NaCl -- --Growth in 10% NaCl -- --Growth in pH 5.7 broth -- --Acid from glucose.sup.d -- --Gas from glucose.sup.d -- --VP (acetoin) -- --Egg yolk agar opacity No growth No growthCasein decomposition + +Gelatin decomposition + --Aesculin + --Starch hydrolysis +.sup.R +.sup.RNO.sub.3.sup.- to NO.sub.2.sup.- -- --Residual N -- --Citrate, Koser's -- --Dextrose azide -- --pH in VP broth 5.5 6.3Litmus milkcoagulation -- --acidification -- --Catalase + +Oxidase + +Growth temperatures.degree.C.25.degree. C. -- --37.degree. C. -- --65.degree. C. + +70.degree. C. -- --______________________________________ .sup.a E, elliptical or cylindrical; S; spherical or nearly so; .sup.b C, central; T, terminal or subterminal; CT, central to terminal; .sup.c On glucose agar; .sup.d Peptone wate sugar, Andrade's indicator; .sup.R restricted
Fatty Acids composition of the strains T2 and T6
The thermophilic xylanase positive isolates T2 and T6 were sent to Microbial ID, INC. Newark, Del., U.S.A. for fatty acids composition. The results received were as follows:
______________________________________Fatty acids composition (%) of xylanase positive thermophileIsolate: T7 T6______________________________________Fatty acid 9:0 0.73 0.6412:0 0.4614:0 iso14:0 0.85 1.9215:0 iso 44.41 46.215: anteiso 2.59 2.3515:0 0.5316: iso 6.25 4.1516:1 4.24 5.5316:0 5.29 6.1417:1 iso H 2.41 2.617:0 iso 26.07 22.5817:0 anteiso 7.15 5.8218:0 1.09______________________________________
Growth Characteristics of the strains T2 and T6, and preparation of concentrated crude supernatants from the cultured strains
Growth media:
(1) XMP medium containing in g/liter: vitamine-free casamino acids, 4; yeast extract, 0.2; MgSO.sub.4, 0.01; (NI-I4).sub.2 SO.sub.4, 2; K.sub.2 HPO.sub.4, 0.46; KH.sub.2 PO.sub.4, 0.1; xylose, 5; MOPS (3-[N-morpholino]propane sulfonic
acid), 10.4; and trace elements. The pH of the medium was 7.0.
(2) Basic salt medium (BSM) supplemented with 0.3% vitamin free casamino acids and 0.5% L-arabinose.
______________________________________The BSM contained, in grams/liter:K.sub.2 PO.sub.4.7H.sub.2 O 0.75;KH.sub.2 PO.sub.4 0.15;MgSO.sub.4.7H.sub.2 O 0.1;(NH.sub.4)SO.sub.4 2;MOPS buffer 10.4;(3-N-morpholino propane sulfonic acid)and 1 ml of trace element solution, whichsolution contained, in grams/liter:CaCl.sub.2.2H.sub.2 O 0.37;CuSO.sub.4.5H.sub.2 O 0.62;FeSO.sub.4.7H.sub.2 O 0.60;MnSO.sub.4.4H.sub.2 O 0.59;ZnSO.sub.4.7H.sub.2 O 0.42;COCl.sub.2.6H.sub.2 O 0.79;Na.sub.2 MoO.sub.4 0.696.The pH of the trace element solution was adjusted to2.0 with sulfuric acid.______________________________________
The pH of the BSM was adjusted to 7.0 and the carbon sources were added after sterilization. Growth was carried out in 125 ml flasks containing 25 ml medium and reciprocally shaking (180 strokes/rain) in a water bath at 60.degree. C.
Xylanase Activity
Xylanase activity was determined by incubating a fresh solution of xylan with extracellular supernatant fluid from media (1) and assaying for increase in reducing sugars by the ferricyanide method (Spiro, R. G. 1966, Methods in Enzymology 8: 7-9). Assay buffer was 50 mM Tris. Cl, pH 7.0 and 0.5% xylan (oat spelts, Sigma). Units of activity for xylanase are .mu.mol reducing sugar generated per minute at 65.degree. C.
Cell turbidity of the medium;
The cell turbidity of the medium is given in Klett units. 1KU=0.004 g of dry cell weight (DCW)/liter. Once the culture reaches its maximum density it tends to lyse as indicated by the sharp decrease of the culture turbidity.
The strains T2 and T6 were grown in XMP or BSM medium for 24 hours in a New Brunswick Microferm 7.5 liter fermentor. Growth was carded out in a working volume of 4 liter, at 60.degree. C., agitation rate of 600 RPM and aeration rate of 7 liter per minute. Foaming was controlled automatically by adding silicon antifoam (5%, Fluka) and the working volume was maintained by adding sterile water. The initial starting inocula gave turbidities of 10KU (0.04 g DCW/liter). For the first 8 hours of the fermentations cell turbidity increased to 540 and 700 KU for strains T6 and T2, respectively. At 24 hours cell turbidity declined.
The culture liquid was cooled to room temperature and centrifuged (8000 g, min., 20.degree. C.) to remove the cells. The cell free supernatant contained 1.0-1.4 and 2.0-2.4 units xylanase per ml for strains T2 and T6 respectively and about 0.02 mg protein per ml for both strains. Protein was concentrated by adding to the supernatant solid ammonium sulfate to 80% saturation at 4.degree. C. and centrifuging (9000 g, 15 min.) the mixture following 12 hours at 4.degree. C. The precipitate was dissolved in a total volume of 100 ml of 10 mM phosphate buffer pH 7.0 and dialyzed three times against liter of the same buffer at 4.degree. C. The dialyzed solution (120 ml) contained about 7 mg/ml protein and 15-20 and 35-40 units of xylanase for strains T2 and T6 respectively.
______________________________________Time (h) KU Xylanase (U/ml)______________________________________Growth of strain T6 0 10 nd 2 25 nd 4 140 nd 6 400 1.48 8 540 1.8811 540 1.7814 528 2.26 24.5 280 2.42Growth of strain T2 0 10 nd 2 30 nd 4 160 0.75 6 430 0.58 8 700 0.9811 600 1.0524 250 1.28______________________________________
It should be noted that the xylanase activity of the strains T2 and T6 did not decrease at the end of the fermentation.
The preparation exhibiting enzymatic activity according to the invention
The cell-free supernatants from growth of the strains T2 and T6 in XMP medium contain at least one xylanase, since they were shown to exhibit xylanase activity. Said supernatants (also called crude enzyme preparations) and partially purified fractions thereof have been used in the treatment of unbleached and oxygen semi-bleached softwood sulphate pulps.
Unbleached and Oxygen semi-bleached pulp samples
The pulp samples were softwood sulphate pulp samples taken from the Korsnas mill.
The unbleached pulp sample was a sample taken after alkali digestion in a Kamyr digester, laboratory screened and washed, and said sample was dried over night at 50.degree. C. The semi-dry sample was used in the experiments, and it was designated K8. This material was dried at 105.degree. C. to constant weight yielding a water content of 6.35%.
The oxygen semi-bleached pulp sample was a sample that had been treated in the Korsnas fiber-line 3, and it was taken after the second oxygen treatment, laboratory screened and washed. A general description of the pulp treatment plant of Korsnas has been published in Paper 26, September 1989, p. 20 and Nordisk Cellulosa 1989 No. 6, p. 8-11.
The oxygen semi-bleached pulp was designated K11.
Lignin content of pulps K8 and K11.
The lignin contents of pulps K8 and K11 were determined by the procedure of The Swedish Association of Pulp and Paper Engineers, Series CCA5. The lignin content of K8 (unbleached) was 2.8% and the lignin content of K11 (oxygen semibleached) was 2.0%. Thus, the oxygen semi-bleached sample K11 had approximately 25% reduced value for lignin content compared to K8.
Experiments conducted with crude enzyme preparations from Bacillus stearothermophilus strains T2 and T6 on delignification of pulps K8 and K11
For the estimation of how much lignin is made extractable by the enzymatic preparations of the invention a sensitive spectrophotometric assay was used. The absorbance values at 350 nm (.lambda..sub.350) were measured on the supernatant liquids of the samples, and measured values are presented as % lignin released.
The experiments and the results are summarized in Tables 1-5.
From the data given in the Tables 1-5 it can be concluded that the crude enzyme preparations from Bacillus stereothermophilus strains T2 and T6 are capable of delignifying both unbleached and semi-bleached pulp samples at pH values of at least 9 and at temperatures of at least 65.degree. C. Moreover, it can be concluded that the lignin released is both time- and concentration-dependent.
TABLE 1______________________________________Release of lignin from pulp K11 as a function of crudeenzyme preparations from B. stearothermophilusstrains T2 and T6.sup.a % lignin released.sup.bEnzyme (mg/ml) Total Net______________________________________0 8 --T2 (0.6) 14 6T2 (0.8) 17 9T2 (1.2) 20 12T2 (1.9) 22 14 T6 (0.25) 16 8T6 (0.5) 18 10T6 (1.1) 19 11______________________________________
TABLE 2______________________________________Kinetics of lignin release from pulp K11 by crudeenzyme preparation from B. stearothermophilusstrains T2 and T6.sup.a % lignin releasedTime (h) Enzyme.sup.b Total Net______________________________________2 T2 17 124 T2 23 1818 T2 29 212 T6 12 54 T6 15 86 T6 17 918 T6 18 10______________________________________ .sup.a The experiment was conducted as described in Table 1 at 65.degree. C. and pH 9.0. .sup.b The concentration of crude enzyme T2 and T6 were 2.8 and 1.5 mg protein/ml, respectively.
TABLE 3______________________________________Release of lignin as a function of temperature by crudeenzyme preparations from B. stearothermophilusstrains T2 and T6.sup.aTemperature % lignin released.degree.C. Enzyme.sup.b Total Net______________________________________53 T2 16 665 T2 19 975 T2 20 553 T6 15 565 T6 18 875 T6 20 5______________________________________ .sup.a The experiment was conducted as described in Table 1 at 65.degree. C. and pH 9.0. .sup.b The concentration of crude enzymes T2 and T6 were 1.7 and 0.7 mg protein/ml, respectively.
TABLE 4______________________________________Release of lignin from K11 as a function of pH.sup.a. % lignon releasedpH Enzyme.sup.b Total Net______________________________________7 T2 14 6.48 T2 14 6.19 T2 17 7.710 T2 18 8.37 T6 13 48 T6 15 69 T6 19 910 T6 18 710.5 T6 18 6______________________________________ .sup.a The experiment was conducted as described in Table 1 at 65.degree. C. and pH 9.0 for 18 h. .sup.b The concentrations of crude enzyme preparations T2 and T6 were 1.7 and 1.5 mg protein/ml, respectively.
TABLE 5______________________________________Release of lignin from pulp K8.sup.aEnzyme Concentration % lignin releasedpreparation (mg/ml) Total Net______________________________________T2 0.8 16 5T2 1.2 17 6T2 1.6 20 9T6 0.3 14 3T6 0.6 15 4T6 1.1 17 6______________________________________ .sup.a The experiment was conducted as described in Table 1 at 65.degree. C. and pH 9.0 for 18 h, using pulp K8 instead of K11.
Preparation of a highly purified fraction from growth of strain T6
A highly purified fraction (in the form of a xylanase) of the clarified culture broth from growth of strain T6 is obtainable by the use of a cation exchanger in a single concentration and purification step. Thus, xylanase T6 was purified and concentrated directly from the cell free supernatant by adsorption to the cation exchanger CM-52 (Whatman). However, with XMP medium, the recovery yield was only 21% presumably because of the high ionic strength of the medium. When the medium was dialysed against low ionic strength buffer or when MOPS was omitted from the medium the recovery yields were about 50%. To determine the minimal amount of CM-52 needed for effective adsorption from the clarified culture medium, different amounts of CM-52 were tested for purifying xylanase T6. The results are given in Table 6.
TABLE 6______________________________________Batch adsorption of xylanase T6 with differentamounts of CM-52CM-broth Volume Xylanase Total Yield(g/g) Fraction (ml) (U/ml) units (%)______________________________________ Supernatant 100 0.78 78.0 100.00.1 Extract 40 1.04 41.6 53.3 Nonadsorbed 100 0.055 5.5 7.00.05 Extract 30 1.3 39.9 50.0 Nonadsorbed 100 0.077 7.7 9.80.02 Extract 15 1.94 29.1 37.3 Nonadsorbed 100 0.16 16.0 20.50.01 Extract 14 2.05 28.7 36.8 Nonadsorbed 100 0.24 24.0 30.8______________________________________
As shown in Table 6, at 5% adsorbent the yield is 50%. Another commercially available cation exchanger is SE-52 (Whatman) (the negative groups are sulfoxyethyl attached to cellulose). SE-52 is known to have a larger adsorption capacity than CM-52. Since the purification step is also a concentrating step, it is advantageous to use as little adsorbent as possible. We therefore tried SE-52 for adsorbing xylanase. The results are given in Table 7.
TABLE 7______________________________________Batch adsorption of xylanase T6 with differentamounts of SE-52SE-52/ Volume Xylanase Total Yieldsbroth (g/g) Fraction (ml) (U/ml) units (%)______________________________________ Supernatant 100 1.41 141.0 100.00.05 Extract 30 2.4 72.0 51.10.02 Extract 21 3.2 67.8 48.00.01 Extract 20 2.9 58.0 41.1______________________________________
As shown in Table 7, only 2% of SE-52 was needed to obtain 48% recovery of xylanase T6.
Characterization Of xylanase T6
The molecular weight of xylanase T6 was determined by SDS PAGE and gel filtration, yielding values between 41,000 and 42,000 Daltons. The fact that both methods gave similar MW indicates that the enzyme is composed of a single polypeptide chain (SDS PAGE separates the protein subunits). The p 1 (the pH where the total charge of the protein is zero) of the enzyme was 9.0 determined by high voltage isoelectric focusing. The relatively high p 1 of the enzyme explains the positive charge of the enzyme at neutral pH. The pH optimum of the enzyme was around 7.0; at pH 9.0 the enzyme had about 50% of its pH 7.0 activity. The temperature profile of xylanase T6 activity is given in Table 8.
TABLE 8______________________________________The activity of xylanase T6 at different temperatures.*Temperature Relative Activity.degree.C. %______________________________________45 2855 5160 7065 8170 9275 10080 7385 40______________________________________ *Reaction time: 5 minutes The thermostability of xylanase T6 at a temperature of 65.degree. C. and a pH of 9 is shown in Table 9.
TABLE 9______________________________________Thermostability of xylanase T6 at 65.degree. C. and pH 9Time Relative activityh %______________________________________0 1000.25 820.5 781 752 724 63______________________________________ ps Additionally, it can be mentioned that at 65.degree. C. and pH 7, no loss of activity was detected for over 10 h.
Obtaining xylanase constitutive mutants from strain T6
To obtain the mutants we used the fact that in many cases xylanase and xylosidase are under the same regulatory control (the same repressor). Strains that produced xylosidase can be easily detected on agar plates containing the chromogenic substrate p-nitrophenyl/.beta.-D-xylopyranoside (ONPX). Only constitutive mutants for xylosidase will produce yellow color on agar plates in the absence of xylose. To obtain xylosidase constitutive mutants, cells were mutagenized with MNNG (1-methyl-3-nitro-1-nitrosoguanidine) and then plated on agar plates containing ONPX without xylose. About one out of five hundred cells produced colonies which yielded yellow color on the agar plates. Thirty xylosidase constitutive mutants were isolated in this way, and all of them were also xylanase constitutives. The growth and xylanase production of two of these mutants (M-7 and M-28), growing in the presence of xylose or glucose, are given in Tables 10 and 11. On both media (XMP and GMP) the mutants and T6 exhibited similar growth rates. However, the mutants produced considerably higher levels of xylanase on XMP medium compared to T7. On GMP medium (glucose is the carbon source) strain T 6 failed to produce detectable levels of xylanase whereas the mutants produced high level of xylanase activity. The xylanase from strain M-7 was purified and showed identical properties to the T6
TABLE 10______________________________________Growth and xylanase production of T6 xylanase constitutivemutants on XMP Time Turbidity XylanaseStrain (h) (KU) (U/ml)______________________________________T6 0 10 --T6 2 40 --T6 4 150 0.5T6 6 200 0.8T6 12 310 2.1T6 24 290 2.3T6 30 270 --M7 0 10 --M7 2 30 --M7 4 190 0.9M7 6 270 1.6M7 12 350 2.1M7 24 310 2.3M7 30 310 --M28 0 20 --M28 1 20 --M28 4 40 0.6M28 6 120 2.0M28 10 370 5.5M28 24 320 7.2______________________________________
TABLE 11______________________________________Growth and xylanase production of T6 xylanase constitutivemutants on GMP Time Turbidity XylanaseStrain (h) (KU) (U/ml)______________________________________T6 0 20 --T6 2 30 0T6 4 80 0.1T6 6 230 0.1T6 8 340 0.1T6 23 390 0.1T6 32 370 --M7 0 20 --M7 2 70 0.3M7 4 100 0.6M7 6 310 1.1M7 8 340 1.4M7 23 330 2.2M7 32 300 --M28 0 20 --M28 1 20 --M28 4 30 0.1N28 6 100 0.9M28 8 190 1.7M28 10 320 3.1M28 23 330 4.8______________________________________
Fragment Sequence and amino acid composition of xylanase T-6
From a sufficiently long stretch of the N-terminal amino acid sequence of a protein, one can completely identify the protein. The sequence of one fragment of the xylanase T6 was determined twice at the Weizman Institute, Israel, on an Applied Biosystems gas phase microsequencer ABI 475A. The first protein sample was electroblotted first onto a PVDF membrane (Millipore) and gave only 20 amino acids. The second protein sample was purified first on a Superose 12 FPLC column (Pharmacia) and was sufficient for obtaining the sequence of 41 amino acids. The obtained sequence is sequence I.D, No. (1).
To further characterize the enzyme, an amino acid analysis was performed on the purified xylanase T6. The results from this analysis are shown in Table 12.
TABLE 12______________________________________Amino Acid composition of xylanase T6Pk Component Concentration Residues perNum Ret Time Name (nmoles) molecule.sup.a______________________________________1 8.08 Aspartic acid 4.705 .sup. 58.sup.b2 9.76 Threonine 0.851 123 10.45 Serine 0.672 104 14.05 Glutamic acid 3.639 44.sup.c5 15.52 Proline 1.950 246 18.80 Glycine 1.640 207 19.84 Alanine 2.439 308 20.80 Cystine 0.061 19 21.81 Valine 2.250 2810 23.60 Methionine 0.150 211 24.64 Isoleucine 2.064 2612 25.39 Leucine 1.027 1413 28.75 Tyrosine 1.613 2214 29.87 Phenylalanine 1.269 1615 38.37 Lysine 3.124 3816 39.95 Ammonia 3.69117 42.65 Histidine 0.560 618 48.05 Arginine 0.904 12______________________________________ .sup.a Based on a molecular weight of 42,000 Dalton; corrections were mad for unstable amino acids. .sup.b The aspartic acid is the sum of aspartic acid and asparagine (Asx) .sup.c The glutamic acid is the sum of glumatic acid and glutamine (Glx).
Experiments conducted with enzyme on pulp K14
The pulp sample K14 was an oxygen semi-bleached soft wood pulp from the Korsnas mill. The enzyme was the purified thermophilic xylanase T6.
Various parameters effecting the extent of delignification of the pulp K14 were investigated.
The effect of fiber concentration is summarized in Table. 13.
TABLE 13______________________________________Effect of fiber concentration on xylanase treatment*Xylanase Fiber Net Lignin Released(U/ml) (%) (%)______________________________________5.1 4.7 4.95.1 2.5 6.620.4 4.7 9.320.4 2.5 11.815.0 1.0 15.040.8 2.5 13.945.0 1.0 16.7______________________________________ *Conditions: pH 9.0, 65.degree. C., 2 h; K14 pulp: the no enzyme control was subtracted in each case.
As seen in Table 13, decreasing the fiber concentration from 4.7 to 2.5 to 1.0% dry weight fiber, enhanced the process. Since the enzymatic treatment is performed without mixing, it is likely that there was poor contact between the enzyme and insoluble substrate. For practical reasons, we chose to work at 2.5% fiber.
Effect of pH is given in Table 14.
TABLE 14______________________________________Effect of pH on xylanase treatment* Net Lignin ReleasedpH Buffer (%)______________________________________8.5 0.01 M Phosphate 8.39.0 8.49.5 6.38.5 0.1 M Na.sub.2 SO.sub.4 10.99.0 10.29.5 8.2______________________________________ *Conditions: 2.5% K14 pulp, 15 U/ml xylanase, 2 h, 65.degree. C.
As seen in Table 14, the enzyme is most effective at pH 8.5-9.0 in both potassium phosphate and sodium sulfate. Earlier experiments indicated lower activities below pH 8.0 and above pH 9.5.
Effect of Na.sub.2 SO.sub.4 concentration is shown in Table 15.
TABLE 15______________________________________Effect on Na.sub.2 SO.sub.4 concentration*Na.sub.2 SO.sub.4 (M) Net Lignin Released (%)______________________________________0 7.20.01 8.60.05 9.90.10 10.80.15 11.50.20 10.7______________________________________ *Conditions: 2.5% K14 pulp, 10 U/ml xylanase, pH 9.0, 65.degree. C., 2 h.
The treatment was effective from no added Na.sub.2 SO.sub.4 up to 0.2M with optimum activity at 0.15M Na.sub.2 SO.sub.4.
Effect of xylanase concentration is summarized in Table 16.
TABLE 16______________________________________Release of lignin as a function of xylanase concentration*Xylanase Lignin Release(U/ml) Buffer (% Klason)______________________________________ 0 0.01 M K Phosphate 0 5 810 1015 1245 14 0 0.1 M Na.sub.2 SO.sub.4 0 5 1210 1315 1445 16______________________________________ *Conditions: 2.5% dry fiber K14, 2 h, pH 9, 65.degree. C.
As seen in Table 16, there was a concentration dependent release of lignin up to approximately 15 U/ml in both 0.1M Na.sub.2 SO.sub.2 and potassium phosphate buffer. Higher concentrations of enzyme or a longer period of incubation (4 h) increased the net lignin released only slightly.
Preparation of 10 g and 50 g samples of treated K14 for further tests
10 g samples of K14 pulp were treated with 15 U/ml and 45 U/ml xylanase for 2h and 4 h, together with the appropriate controls. All samples were prepared in duplicate. All incubations were carried out at pH 9.0 and 65.degree. C. The spectrophotometric analysis of lignin release is shown in Tables 17 (phosphate buffer) and 18 (0.1M Na.sub.2 SO.sub.4). The net release of lignin ranged from 10.3 to 14.9%, with the 45 U/ml enzyme and 4 h incubation periods giving slightly higher values than 15 U/ml and 2h.
Recently, 50 g samples of pulp were treated in duplicate for additional analyses. The net release of lignin was 10.8% for 15 U/ml enzyme for 2h and 12.6% for 15 U/ml for 4 h.
TABLE 17______________________________________Xylanase treatment of 10 g K14 pulp in phosphate buffer*Xylanase Time Lignin Released %(U/ml) (h) Total Net______________________________________ 0 2 5.3 015 2 15.6 10.345 2 17.9 12.6 0 4 6.3 015 4 17.4 11.145 4 20.1 13.8______________________________________ *Conditions: 2.5% K14 pulp, pH 9.5, 65.degree. C.; average of two experiments
TABLE 18______________________________________Xylanase treatment of 10 g K14 pulp in 0.1 M Na.sub.2 SO.sub.4Xylanase Time Lignin Released (%)(U/ml) (h) Total Net______________________________________ 0 2 5.9 015 2 17.6 11.745 2 19.8 13.9 0 4 7.0 015 4 19.4 12.445 4 21.9 14.9______________________________________ *Conditions: As in Table 17
Analysis of Xylanase-treated 10 g samples
The results of the analyses are summarized in Tables 19-23. The parameters given in the tables were according to the SCAN Test series, except for the Zero-span values which were measured according to the manufacturers (Pulmac Instruments, Ltd., Canada) instructions. Table 19 presents the data obtained using pulp that had been treated for 2 h at 65.degree. C., pH 9.0, in 0.1M Na.sub.2 SO.sub.4 with no enzyme (control) and 15 U/ml enzyme. As can be seen, there was excellent reproducibility with the duplicate samples, prepared at two week intervals. The largest effect was on pentosan content, which decreased 17.4%. There were small but significant decreases in Kappa number and tensile indices, and increases in brightness, viscosity and zero-span values.
The values of the above properties for the pulp or handsheets made from the pulp were not very different at 15 U/ml and 45 U/ml enzyme, 2 h and 4 h treatment and use of 0.01M potassium phosphate and 0.1M Na.sub.2 SO.sub.4 Gables 20 and 21).
To analyze the significance of these data, the values of pulp and paper properties are presented in Tables 22 and 23 as percent changes compared to the appropriate controls. The conclusions are as follows:
1. Pentosans are partially removed (10.4-22.2%); higher levels of enzyme remove more pentosans.
2. There is a small but significant increase in viscosity; this can be explained by the removal of pentosans (about 1% of the dry weight of K14). There is no evidence for cellulose degradation, even at the highest concentration of enzyme at 4 h at 65.degree. C., pH 9.
3. The Kappa number decreased in all eight conditions examined (range: 5.5-9.1%). Since the values did not decrease further at higher enzyme concentrations (whereas pentosans were), the higher levels of enzyme appeared to remove pentosans that were not linked to lignin.
4. In all eight conditions tested, the handsheets showed small increases in brightness and zero-span values and decreases in tensile indices.
TABLE 19__________________________________________________________________________Xylanase treatment of K14 pulp*Parameter Control Enzyme treated Average Change (%)__________________________________________________________________________Kappa No. 17.3 16.8 16.0 15.5 -7.6 (.+-.0.1)Viscosity (dm.sup.3 /Kg) 1066 1045 1072 1059 +0.8 (.+-.0.1)Pentosan (%) 9.1 9.3 7.7 7.5 -17.4 (.+-.1.8)Handsheets (75 g/m.sup.2)Brightness (% ISO) 32.5 33.8 33.4 33.8 +2.9 (.+-.0.1)Tensile Index ((Nm/g) 20.9 20.4 19.0 19.3 -7.2 (.+-.1.8)Zero-span (Wet), (Nm/g) 95.2 97.8 101.5 104.3 +6.3 (.+-.0.3)__________________________________________________________________________ *Conditions: 15 U/ml enzyme, pH 9.0, 2 h, 0.1 M Na.sub.2 SO.sub.4
TABLE 20__________________________________________________________________________Xylanase treatment of K14 pulp in 0.1 M Na.sub.2 SO.sub.4 * 0/ml 15 U/ml 45 U/ml 0 U/ml 15 U/ml 45 U/mlParameter 2 h 2 h 2 h 4 h 4 h 4 h__________________________________________________________________________Kappa 17.1 15.8 16.0 17.0 15.4 15.8Viscosity 1055 1066 1072 1061 1075 1075Pentosan 9.2 7.6 7.3 9.0 7.5 7.0Brightness 32.6 33.6 34.1 32.6 34.1 34.4Tensile 20.7 19.2 20.7 21.2 19.6 19.8Zero-span 97 103 104 100 104 103__________________________________________________________________________ *Average of two experiments; conditions as in Table 19.
TABLE 21__________________________________________________________________________Xylanase treatment of K14 pulp in 0.01 phosphate buffer* 0/ml 15 U/ml 45 U/ml 0 U/ml 15 U/ml 45 U/mlParameter 2 h 2 h 2 h 4 h 4 h 4 h__________________________________________________________________________Kappa 17.0 15.9 16.0 17.2 16.0 16.2Viscosity 1065 1073 1076 1060 1070 1073Pentosan 9.1 8.2 7.4 9.0 7.9 7.4Brightness 31.8 33.2 33.6 32.6 33.2 33.7Tensile 21.0 19.2 20.4 20.9 19.4 20.3Zero-span 101 101 107 99 102 104.__________________________________________________________________________ *Average of two experiments.
TABLE 22______________________________________Xylanase treatment of K14 pulp* Change (%) 15 U/ml 15 U/ml 45 U/ml 45 U/mlParameter 2 h 4 h 2 h 4 h______________________________________Kappa -7.6 -9.1 -5.9 -7.1Viscosity +0.8 +1.4 +1.5 +1.4Pentosan -17.4 -16.5 -20.6 -22.2Brightness +2.9 +4.4 +4.7 +5.3Tensile -7.2 -7.5 -6.8 -6.4Zero-span +6.3 +3.7 +7.1 +3.0______________________________________ *0.1 M Na.sub.2 SO.sub.4 ; Data from Table 20
TABLE 23______________________________________Xylanase treatment of K14 pulp* Change (%) 15 U/ml 15 U/ml 45 U/ml 45 U/mlParameter 2 h 4 h 2 h 4 h______________________________________Kappa -7.3 -7.0 -6.7 -5.5Viscosity +0.8 +0.9 +1.0 +1.2Pentosan -10.4 -12.7 -20.7 -18.4Brightness +4.3 +2.8 +5.3 +3.2Tensile -8.8 -7.4 -3.3 -2.9Zero-span -0.7 +8.3 +5.8 +5.2______________________________________ *0.01 M phosphate; Data from Table 21
Test of bleachability
The pulp K14 with Kappa number 18.5 was used to test the effect of enzyme treatment on bleachability. The pulp K14 was exposed to enzyme treatment at a concentration of 15 units/ml of xylanase produced from the strain T6. After the enzymatie treatment the pulp was bleached with the bleaching sequence used in the Korsnas mill: Chlorine dioxide (D0)--Alkali extraction reinforced with oxygen (EO)--Chlorine dioxide (D1)--Chlorine dioxide (D2).
The enzymatic treatment reduced the lignin content of the pulp to a Kappa number of 15.9. A pulp treated in the same way as the enzyme treated pulp, i.e. at 65.degree. C. and pH 9 in 100 mM Na2504 buffer, but without addition of enzymes, was delignified to a Kappa number of 17.2. The net effect of the enzymatic treatment was a delignification from Kappa number 17.,2 to 15.9, i.e., a delignification of 8%. The pulp treated with enzymes in the sulfate buffer system consumed 47 kg chlorine dioxide (active chlorine)/ton of pulp when bleaching to an ISO-brightness of 83% with the bleaching sequence D0(E0)D 1D2. The corresponding consumption for the pulp treated merely with buffer solution was 59 kg chlorine dioxide (a C1)/ton of pulp, i.e. the enzyme treated pulp consumed 20% less chlorine dioxide.
Fragment sequence and amino acid composition of .alpha.-L-arabinofuranosidase
The N-terminal sequence of .alpha.-L-arabinofuranosidase (AF) was done on an Applied Biosystems model 475A gas phase sequencer. The AF was purified by the following procedure. The cell-free broth was concentrated against solid PEG 20,000. The sample was then applied on an anion exchanger (mono Q HR 5/5, Pharmacia). Fractions with activity were pooled together, concentrated and then applied on a gel filtration column (Superose 12 HR 10/30). The active fractions contained AF that was over 99% clean as judged by SDS-PAGE and contained 500 U/mg. This material was concentrated (0.5 mg/ml) and was used for the N-terminal sequencing. AF from T6 consists of 2 identical sub-units of 64,000 molecular weight (the native enzyme is of 128,00 MW as judged by SDS gel). The pI of AF from T6 is about 4.5.
The N-terminal sequence is sequence I.D. No. (2).
Bleaching experiments
The bleaching experiments using AF from T6 were conducted in the same way as above for xylanase. The results are given in Tables 24-26 as follows.
TABLE 24______________________________________The effect of pH at AF enzymeconcentration of 20 U/ml and Temp. 65.degree. C. % lignin releasedpH Total Net______________________________________7.0 16.1 2.98.0 15 2.39.0 15.5 1.2______________________________________
TABLE 25______________________________________The effect of AF enzyme concentrationat pH 9.0 and Temp. 65.degree. C.Enzyme % lignin releasedU/ml Total Net______________________________________20 15.5 1.240 16.4 2.460 16.5 2.5______________________________________
TABLE 26______________________________________Bleaching with AF together withxylanase at pH 9.0 and Temp 65.degree. C. % lignin releasedTreatment Total Net______________________________________Xylanase (U/ml) 22.1 9.2AF (40 U/ml) 16.4 2.4Xylanase + AF 27.8 13.5______________________________________
As shown in Table 26, the preparation exhibiting xylanase activity and .alpha.-L-arabinofuranosidase activity shows more bleaching than the sum of each enzyme above and thus, the xylanase and .alpha.-L-arabinofuranosidase have a synergistic effect in delignifying wood pulp at a temperature of at least 65.degree. C. and a pH of at least 9.
The invention includes a preparation exhibiting xylanase activity and .alpha.-L-arabinofuranosidase activity which comprises purified xylanase and purified .alpha.-L-arabinofuranosidase, each separately having the capability of delignifying wood pulp at a temperature of at least 65.degree. C. and a pH of at least 9, said preparation having the capability of synergistically delignifying wood pulp at a temperature of at least 65.degree. C. and a pH of at least 9. The components exhibiting xylanase and .alpha.-L-arabinofuranosidase activity are obtained by aerobic fermentation in a suitable medium of B. stearothermophilus strains NCIMB 40221 and NCIMB 40222 and mutants and variants thereof, said mutants and variants having substantially the same capability of producing a preparation exhibiting said xylanase activity and said .alpha.-L-arabinofuranosidase activity as said strains NCIMB 40221 and NCIMB 40222.
__________________________________________________________________________SEQUENCE LISTING(1) GENERAL INFORMATION:(iii) NUMBER OF SEQUENCES: 2(2) INFORMATION FOR SEQ ID NO: 1 :(i) SEQUENCE CHARACTERISTICS:(A) LENGTH: 41 amino acids(B) TYPE: amino acid(D) TOPOLOGY: linear(ii) MOLECULE TYPE: protein(v) FRAGMENT TYPE: N-terminal fragment(xi) SEQUENCE DESCRIPTION: SEQ ID NO: 1 : LysAsnAlaAspSerTyrAlaLysLysProHisIleSerAla1510LeuAsnAlaProGlnLeuAsnGlnArgTyrLysAsnGluPhe15 2025ThrIleGlyAlaAlaValGluProTyrGlnLeuGlnAsn303540(2) INFORMATION FOR SEQ ID NO: 2:(i) SEQUENCE CHARACTERISTICS:(A) LENGTH: 50 amino acids(B) TYPE: amino acid(C) TOPOLOGY: linear(ii) MOLECULE TYPE: protein(v) FRAGMENT TYPE: N-terminal fragment(xi) SEQUENCE DESCRIPTION: SEQ ID NO: 2:AlaThrLysLysAlaThrMetIleIleGluLysAspPhe1510 LysIleAlaGluIleAspLysArgIleTyrGlySerPhe152025IleGluHisLeuGlyArgAlaValTyrGlyGlyIleTyr 3035GluProGlyHisProGlnAlaAspGluAsnGly404550

Number	Date	Country
0262040	Mar 1988	EPX
0383999	Aug 1989	EPX
0386888	Sep 1990	EPX
0395792	Nov 1990	EPX
0406617	Jan 1991	EPX
2557894	Jul 1985	FRX
WO8908738	Sep 1989	WOX
WO9102791	Mar 1991	WOX
WO9102839	Mar 1991	WOX
WO9102840	Mar 1991	WOX
WO9105908	May 1991	WOX
WO9118976	Dec 1991	WOX

.alpha.-L-arabinofuranosidase and xylanase from Bacillus stearothermophilus NCIMB 40221, NCIMB 40222 or mutant thereof for delignification

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