Patent Application
20230089604
The present invention is directed to an anti-adsorption solution for the analysis of peptides. Also a process for the preparation of such an anti-adsorption solution and the use of said anti-adsorption solution are described.
Peptides, hovering in between the small molecules and proteins, are considered a promising class of compounds in the biomedical field. Here, targeted as well as untargeted peptidomics is diverted towards diagnostic applications as well as (possible) therapeutics due to their inherent high target affinity, unrevoked selectivity and generally low toxicity [1]. Accordingly, there is the necessity to develop suitable peptide (bio)-analytical methods. The physicochemical properties that make peptides such a promising class comes with the side-effect of often a challenging analytical method development. A key hurdle in this method development is the unpredictable adsorption of the peptide(s) of interest to plastic and glass consumables occurring from the pre-analytical to the analytical phase. Especially at low concentrations, this adsorption is more pronounced, often exhibiting a non-linear nature and finally resulting in unwanted elevated limits of detection and quantification as well as unreproducible results. Hence, the biologically advantageous heterogeneity in peptide (physico)chemical properties can become a cumbersome characteristic for analytical purposes. Additionally, this heterogeneity inherently comes with the consequence that one-fits-all approaches are frequently impossible [2-5]. Various approaches to overcome this peptide adsorption have already been reported, including organic solvents addition, pH alteration, specific vial type (low adsorption glass and plastic consumables due to surface modifications), use of surfactants and adsorption competitors [5].
Adsorption competition entails occupation of those physicochemical moieties on the consumables that would otherwise be available to the peptide analyte and hence withdraw it from the analytical solution. Based on the specific interactions, various approaches are already reported; for example, a structural analogue of the considered peptide, hence occupying the peptide-specific adsorption locations [6]. Since customized peptide synthesis comes with a price, this dedicated approach is cumbersome and expensive. Other adsorption competitors, also referred to as carrier proteins or displacement agents [5], are the addition of 0.05% V/V rat plasma [7], bovine serum albumin (e.g. 1% m/V) [8, 9], Fmoc-arginine [10], poly(ethylenimine) [11], glucagon [12, 13], diluted SPE-purified bovine plasma [14] or structurally analogue isotope-labeled peptides/proteins [15]. Physicochemical modifications of the consumable surface via siliconizing agents [9, 16] or polyethylene glycol [17] have also been reported. However, Goebel-Stengel et al. demonstrated decreased recoveries of peptides when the glass containers were siliconized [9]. Bovine serum albumin addition has proven a valuable approach to overcome adsorption, however hindering direct LC-MS analysis and increasing the likelihood of adsorption or inclusion of the peptide to albumin, a protein notoriously known for its binding properties.
Another anti-adsorption approach is coating of the surface of the vials or flasks with silicon-based agents, or polyethylene glycol, although said coating methods have not always been shown to be successful.
Together, the currently available methods for reducing peptide adsorption to their surface all have their disadvantages. For example, the addition of bovine serum albumin can be an easy solution to reduce the peptide adsorption, but on the other hand, the presence of bovine serum albumin also complicates analysis afterwards, such as mass spectroscopy, of the peptide solution and also increases the potential adsorption, binding or inclusion of the peptides to the albumin.
In the present invention, a novel anti-adsorption solution for the analysis of peptides and a process for the preparation of such a solution was identified. Typical for the invention, is that despite the presence of anti-adsorption proteins and/or peptides, such as for example bovine serum albumin, the further analysis of the peptides of interest is not influenced. The anti-adsorption solution of the present invention is typically characterized in that the anti-adsorption proteins and/or peptides in the solution are precipitated or eliminated and further diluted. Optionally a heating step before precipitation can take place.
Peptide analysis in the low concentration range can be challenging due to the adsorption of the peptides of interest to the analytical vials. Various anti-adsorption approaches are already reported, though with limited success. In the present application, the inventors found that by creating a mixture of the anti-adsorption peptides, such as obtained from bovine serum albumin, the anti-adsorption solution becomes compatible for use in peptide analytical methods, and no interference or only very limited interference with the peptides of interest (e.g. present in a sample) occurs. In the process for preparing an anti-adsorption solution of the present invention, a controlled mixture of peptides is combined with precipitation of the anti-adsorption proteins and/or peptides. As a result a novel anti-adsorption solution is obtained that remarkably decreases the adsorption of the peptides of interest to the plastic or glass vial. Additionally, the anti-adsorption solution according to the present invention is easily prepared, is compatible with organic solvent addition and/or pH alteration to increase its use-flexibility.
In the present invention, a novel solution for the analysis of peptides and a process for the preparation of such a solution was identified. Typical for the invention, is that despite the presence of anti-adsorption proteins and/or peptides, the further analysis of the peptides of interest is not influenced. The anti-adsorption solution of the present invention is typically characterized in that the anti-adsorption proteins and peptides in the solution are precipitated or eliminated and further diluted. Optionally a heating step can be performed before precipitation or elimination of the protein.
In a first aspect of the invention a process for the preparation of an anti-adsorption solution or diluent is provided. The anti-adsorption diluent comprises a mixture of anti-adsorption components, including peptides, and is obtained by precipitating the protein with acetonitrile. Optionally the protein solution can be boiled before precipitation of the protein. In one embodiment, the protein is albumin, ovalbumin or lactalbumin, in particular bovine serum albumin (BSA).
In general the process of the invention comprises the following steps: 1) preparation of a solution of one or more proteins (or optionally peptides) (also referred herein as one or more anti-adsorption proteins or optionally anti-adsorption peptides) optionally supplemented with a first acid, 2) dilution of the solution of step 1 by the addition of an organic solvent solution optionally comprising a second acid; 3) optionally heating the solution obtained in step 2; 4) cooling down the solution obtained in step 2 or 3; 5) separation and isolation of the solution obtained in step 4 from any precipitate formed during steps 1 to 4; and 6) dilution of the solution obtained in step 5 in water or any other suitable solvent optionally supplemented with a third acid, thereby obtaining the anti-adsorption solution.
In a specific embodiment, the process of the invention comprises the following steps: 1) preparation of a solution of one or more proteins (or optionally peptides) (also referred herein as one or more anti-adsorption proteins or optionally anti-adsorption peptides), 2) dilution of the solution of step 1 by the addition of an organic solvent solution; 3) optionally heating the solution obtained in step 2; 4) cooling down the solution obtained in step 2 or 3; 5) separation and isolation of the solution obtained in step 4 from any precipitate formed during steps 1 to 4; and 6) dilution of the solution obtained in step 5 in water or any other suitable solvent, thereby obtaining the anti-adsorption solution.
In another specific embodiment, the process of the invention comprises the following steps: 1) preparation of a solution of one or more proteins (or optionally peptides) (also referred herein as one or more anti-adsorption proteins or optionally anti-adsorption peptides) supplemented with a first acid, 2) dilution of the solution of step 1 by the addition of an organic solvent solution comprising a second acid; 3) optionally heating the solution obtained in step 2; 4) cooling down the solution obtained in step 2 or 3; 5) separation and isolation of the solution obtained in step 4 from any precipitate formed during steps 1 to 4; and 6) dilution of the solution obtained in step 5 in water or any other suitable solvent supplemented with a third acid, thereby obtaining the anti-adsorption solution.
By using the process of the present invention, the protein in the solution is (optionally) heated, precipitated or eliminated and the resulting remaining solution finally diluted. As a result, the protein is expected to be partially and selectively hydrolyzed, while the bulk protein is precipitated, and the resulting constituents, consisting of i.a. peptides, maintain their anti-adsorptive capacity, but their analytical interference with the peptides of interest is reduced or even completely absent.
In the process of the present invention, a solution of 25 ng/ml to 1 g/ml of one or more anti-adsorption proteins and/or peptides in water is prepared in step 1 and optionally supplemented with 0.1% to 10% m/V of a first acid. In a further embodiment, a solution of 25 μg/ml to 25 mg/ml of one or more anti-adsorption proteins and/or peptides in water is prepared in step 1 and optionally further supplemented with 0.1% to 10%; preferably 0.1% to 1% of the first acid. For example, a solution of 10 mg/ml of one or more anti-adsorption proteins and/or peptides in water is prepared and further supplemented with 0.1% of the first acid. In another example, a solution of 10 mg/ml of one or more anti-adsorption proteins and/or peptides in water is prepared without the addition of an acid.
In a further aspect, and in step 2 of the process of the present invention, the solution prepared in step 1 is diluted by the addition of a 0% to 99% V/V organic solvent solution in order to obtain a concentration of 2.5 ng/ml to 0.1 g/ml of one or more proteins and/or peptides in the solution. Optionally, the organic solvent may comprise 0.1% to 10% (m/V) of a second acid. In still a further aspect, in step 2, the solution prepared in step 1 is diluted to a concentration of 2.5 ng/ml to 0.1 g/ml of one or more anti-adsorption proteins and/or peptides by the addition of a 0% to 99% V/V organic solvent solution optionally supplemented with 0.1% to 10% (m/V) of the second acid. In an even more preferred embodiment, the solution prepared in step 1 is diluted to a concentration of 2.5 ng/ml of one or more anti-adsorption proteins and/or peptides by the addition of a 95% (V/V) organic solvent solution with 0.1% (m/V) of the second acid.
In the optional step 3 of the process according to the present invention, the solution obtained in step 2 is heated. In further embodiment, the solution is heated for 1 to 1000 minutes to 30° C. to 120° C. In a preferred embodiment, in step 3, the solution obtained in step 2 is heated for 1 to 10, in particular 5 to 10, minutes to 75° C. to 100° C. In an even more preferred embodiment, the solution is heated for 5 minutes to 95° C. In a particular and preferred embodiment, the method of the present invention comprises step 3 according to all its different embodiments, and hence step 3 is not optional, but is always included in the method of the present invention. In still another further embodiment, step 3 is optional in the method according to the present invention, and the method according to the invention can be performed without step 3.
In the process according to the present invention, the solution obtained in step 2 or 3 is cooled down in step 4. In a further aspect, in step 4 the solution is cooled down for 0 to 600 minutes to 40° C. to −35° C. In a preferred embodiment, in step 4, the solution obtained in step 3 is cooled down for 5 to 60 minutes to 8° C. to −8° C. In an even more preferred embodiment, the solution is cooled down at 0° C. on ice for 30 minutes.
The process of the present invention is further characterized in that it comprises a step 5 wherein from the solution of step 4 any precipitate formed during steps 1 to 4 is separated and isolated. Said separation and isolation of the solution from any precipitate can be performed by any suitable separation method, such as for example centrifugation or filtration. In a preferred embodiment, the separation and isolation is performed by centrifugation. In an even more preferred embodiment, the centrifugation in step 5 is performed for 0 to 600 minutes at 100 g to 100000 g. In an even more preferred embodiment, the centrifugation in step 5 is performed for 1 to 60 minutes, for example for 10, 20 or 30 minutes, at 1000 g to 50000 g. For example, the centrifugation in step 5 is performed for 15 minutes at 20000 g at 4° C.
In the last step (step 6) of the process according to the invention, the solution obtained from step 5 is diluted in water optionally supplemented with a third acid, thereby obtaining the anti-adsorption solution. In a preferred embodiment, in step 6, the solution is diluted in water supplemented with 0.1% to 10% (m/V) of a third acid; preferably diluted in water supplemented with 0.1% to 1% (m/V) of a third acid, such as for example 0.1%, 0.2% or 0.5% of a third acid. In a most preferred embodiment, 0.1% of a third acid is used. In further embodiment, in step 6, the solution obtained in step 5 is diluted in water supplemented with said third acid by the addition of 0.1 to 9.9 parts of the solution obtained in step 5 in 9.9 to 0.1 parts water supplemented with said third acid. In a preferred embodiment, in step 6, the solution obtained in step 5 is diluted in water supplemented with the third acid by the addition of 2 parts of the solution on 1 part of water supplemented with said third acid. In another embodiment, in step 6, the solution is diluted in water without the presence of any acid. In particular, the solution obtained in step 5 is diluted in water by the addition of 0.1 to 9.9 parts of the solution obtained in step 5 in 9.9 to 0.1 parts water. In a preferred embodiment, in step 6, the solution obtained in step 5 is diluted in water by the addition of 2 parts of the solution in 1 part of water.
As already mentioned above, the present invention provides a process for the preparation of an anti-adsorption solution starting from a solution of one or more proteins, including peptides, in water (or other suitable excipient or solvent) optionally supplemented with a first acid. Said one or more proteins and/or peptides can be selected from albumin, ovalbumin, lactalbumin globulin, gelatin, or any other protein or peptide source, or a combination thereof. In a preferred embodiment, the process of the present invention starts from a solution of one or more anti-adsorption proteins, including peptides, in water (or other suitable solvent) optionally supplemented with a first acid, wherein said solution comprises at least albumin, preferably at serum albumin; even more preferably at least bovine serum albumin, as anti-adsorption protein. In an even more preferred embodiment, the process of the present invention starts from a solution of albumin, preferably serum albumin, even more preferably bovine serum albumin, in a solvent such as water supplemented with a first acid.
Thus, in a particular aspect, the present invention provides a process for the preparation of an anti-adsorption solution, said process comprising the following steps: 1) preparation of a solution of 25 μg/ml to 25 mg/ml serum albumin in water optionally supplemented with 0.1% to 1% (m/V) of a first acid, 2) dilution of the solution of step 1 to a concentration of 2.5 μg/ml to 2.5 mg/ml serum albumin by the addition of 0% to 95% (V/V) of an organic solvent solution optionally comprising 0.1% to 1% of a second acid; 3) optionally heating the solution obtained in step 2 for 1 to 10 minutes to 75° C. to 100° C., 4) cooling down the solution of step 2 or 3 for 5 to 60 minutes to 8° C. to −8° C.; 5) separation and isolation of the solution obtained in step 4 from any precipitate formed during steps 1 to 4 by centrifugation; and 6) dilution of the solution obtained in step 5 in water optionally supplemented with 0.1% to 1% m/V of a third acid, thereby obtaining the anti-adsorption solution. In a further aspect, and in step 6, the solution obtained in step 5 is diluted in water optionally supplemented with the third acid by the addition of 0.1 to 9.9 parts of the solution obtained in step 4 or 5 in 9.9 to 0.1 parts water supplemented with said third acid. For example, in step 6, the solution obtained in step 5 is diluted in water optionally supplemented with the third acid by the addition of 2 parts of the solution on 1 part of water optionally supplemented with said third acid.
In another particular aspect, the present invention provides a process for the preparation of an anti-adsorption solution, said process comprising the following steps: 1) preparation of a solution of 25 μg/ml to 25 mg/ml serum albumin in water supplemented with 0.1% to 1% (m/V) of a first acid, 2) dilution of the solution of step 1 to a concentration of 2.5 μg/ml to 2.5 mg/ml serum albumin by the addition of 0% to 95% (V/V) of an organic solvent solution comprising 0.1% to 1% of a second acid; 3) optionally heating the solution obtained in step 2 for 1 to 10 minutes to 75° C. to 100° C., 4) cooling down the solution of step 2 or 3 for 5 to 60 minutes to 8° C. to −8° C.; 5) separation and isolation of the solution obtained in step 4 from any precipitate formed during steps 1 to 4 by centrifugation; and 6) dilution of the solution obtained in step 5 in water supplemented with 0.1% to 1% m/V of a third acid, thereby obtaining the anti-adsorption solution. In a further aspect, and in step 6, the solution obtained in step 5 is diluted in water supplemented with the third acid by the addition of 0.1 to 9.9 parts of the solution obtained in step 4 or 5 in 9.9 to 0.1 parts water with said third acid. For example, in step 6, the solution obtained in step 5 is diluted in water supplemented with the third acid by the addition of 2 parts of the solution on 1 part of water supplemented with said third acid.
In still another particular aspect, the present invention provides a process for the preparation of an anti-adsorption solution, said process comprising the following steps: 1) preparation of a solution of 25 μg/ml to 25 mg/ml serum albumin in water, 2) dilution of the solution of step 1 to a concentration of 2.5 μg/ml to 2.5 mg/ml serum albumin by the addition of 0% to 95% (V/V) of an organic solvent solution; 3) optionally heating the solution obtained in step 2 for 1 to 10 minutes to 75° C. to 100° C., 4) cooling down the solution of step 2 or 3 for 5 to 60 minutes to 8° C. to −8° C.; 5) separation and isolation of the solution obtained in step 4 from any precipitate formed during steps 1 to 4 by centrifugation; and 6) dilution of the solution obtained in step 5 in water, thereby obtaining the anti-adsorption solution. In a further aspect, and in step 6, the solution obtained in step 5 is diluted in water by the addition of 0.1 to 9.9 parts of the solution obtained in step 4 or 5 in 9.9 to 0.1 parts water. For example, in step 6, the solution obtained in step 5 is diluted in water by the addition of 2 parts of the solution on 1 part of water.
In the different embodiments of the process wherein an acid is used, the first acid, the second acid and the third acid are each independently selected from formic acid, acetic acid, trifluoro acetic acid or any other known acid. In yet a further embodiment, the first acid, the second acid and the third acid are the same. In an even more preferred embodiment, the first acid, the second acid and the third acid is formic acid.
Further, in all embodiments of the process of the present invention, an organic solvent is added to the solution in step 2. Said organic solvent is selected from acetonitrile, methanol, isopropanol, denatured ethanol or any known organic solvent. In a preferred embodiment, said organic solvent is acetonitrile, methanol, isopropanol, or denatured ethanol. In an even more preferred embodiment, said organic solvent is acetonitrile.
In a second aspect of the invention, an anti-adsorption solution is provided wherein said anti-anti-adsorption solution is obtained by the process according to any of the described embodiments.
In a third aspect, an anti-adsorption powder is disclosed wherein said powder is obtained by drying or freeze-drying of the anti-adsorption solution according to the invention.
In a further aspect, the combination of said anti-adsorption powder and a suitable solvent is provided. Said solvent can be selected from water or aqueous-solvent mixtures. In a particular embodiment, the combination of said anti-adsorption powder and a stabilized preservative (antioxidative inhibitors and/or antimicrobial inhibitors and/or enzyme inhibitors such as protease/peptidase inhibitors), such as for example sodium azide, is provided. In an even further embodiment, the anti-adsorption powder can be provided in a capsule or a tablet or any other form or formulation suitable for its practical intended use.
In a further aspect of the present invention, the use of an anti-adsorption solution or an anti-adsorption powder according to their different embodiments is provided for coating of a recipient such as a container, a vial, a tubing, a column, or any other analytical device. In a further embodiment, said recipient or column is made of glass or plastic. Still another further embodiment, said recipient or column is used in peptide analytical methods. Said peptide analytic methods are selected from immune-based protein analysis methods, such as ELISA, western blotting, liquid phase chromatography; mass spectrometry; or peptidomics. In a preferred embodiment, said peptide analytical methods are selected from liquid chromatography, mass spectrometry, and peptidomics.
In still another aspect of the invention, the use of an anti-adsorption solution or an anti-adsorption powder according to their different embodiments is provided for storage, detection, identification and/or separation of peptides.
A further aspect of the invention discloses the use of an anti-adsorption solution or an anti-adsorption powder according to their different embodiments in peptide analytical methods. Said peptide analytic methods are selected from immune-based protein analysis methods, such as ELISA, western blotting, liquid phase chromatography; mass spectrometry; or peptidomics. In a preferred embodiment, said peptide analytical methods are selected from liquid chromatography, mass spectrometry, and peptidomics. In a further embodiment, in said use, the anti-adsorption solution or powder is combined with a solvent; in particular an organic solvent.
As already said, the anti-adsorption solution or powder of the present invention is particularly useful in peptide analytic methods. Said peptides can be single peptides or mixtures of one or more peptides, and more specific, peptides present in a sample. Any sample can be analyzed, such as a bodily fluid sample derived from a subject. The sample can be blood, serum, nasal mucus, sputum, lung aspirate, vaginal fluid, gastric fluid, saliva, urine, faeces, cerebrospinal fluid. The subject is selected from a human or a non-human animal; preferably from a human, a non-human mammal, or a non-mammal. Said peptides can be hydrophobic peptides or hydrophilic peptides. In preferred embodiment, said peptides are hydrophilic peptides.
In a further aspect, the present invention provides a method for the separation and/or detection of peptides wherein the peptides are provided or diluted in an anti-adsorption solution according to the present invention followed by a peptide analytical method; preferably followed by peptidomics, or liquid chromatography followed by mass spectrometry. In a further embodiment, said method is characterized in that a first mobile phase solvent (mobile phase A solvent) and a second mobile phase solvent (mobile phase B solvent) are used during liquid chromatography; in particular during liquid chromatography in gradient mode. In a further embodiment, the first and second mobile phase solvents are characterized in that they comprise acidified water-acetonitrile-DMSO mixtures, typically acidified with formic acid or other liquid chromatography-compatible known acid in a reversed-phase system. As an example, and in a particular embodiment, the first mobile phase solvent is a solvent comprising 80% water-acetonitrile-DMSO (93-2-5% V/V). In another exemplary embodiment, the second mobile phase solvent is a solvent comprising 20% water-acetonitrile-DMSO (2-93-5% V/V). In a further aspect, said method can be used in the Hydrophilic Interaction Liquid Chromatography (HILIC) mode, for example on an amide column. In said context, the first mobile phase solvent is for example a solvent comprising 40% water-acetonitrile-DMSO (93-2-5% V/V) and the second mobile phase solvent is for example a solvent comprising 60% water-acetonitrile-DMSO (2-93-5% V/V).
The present invention can also be described by the following detailed aspects and relates to a process for the preparation of an anti-adsorption solution, said process comprising the following steps:
1) preparation of a solution of 25 ng/ml to 1 g/ml of one or more proteins and/or peptides in water optionally supplemented with 0.1% to 10% of a first acid;
2) dilution of the solution of step 1 to a concentration of 2.5 ng/ml to 0.1 g/ml of one or more proteins and/or peptides by the addition of a 0.1% to 99% V/V organic solvent solution, said organic solvent solution optionally comprising 0.1% to 10% (m/V) of a second acid;
3) optionally heating the solution obtained in step 2;
4) cooling down the solution obtained step 2 or 3;
5) separation and isolation of the solution obtained in step 4 from any precipitate formed during steps 1 to 4; and
6) dilution of the solution obtained in step 5 in water optionally supplemented with 0.1% to 10% (m/V) of a third acid, thereby obtaining the anti-adsorption solution.
In a further aspect, the process according to the invention comprises the following steps:
1) preparation of a solution of 25 ng/ml to 1 g/ml of one or more proteins and/or peptides in water supplemented with 0.1% to 10% of a first acid;
2) dilution of the solution of step 1 to a concentration of 2.5 ng/ml to 0.1 g/ml of one or more proteins and/or peptides by the addition of a 0.1% to 99% V/V organic solvent solution comprising 0.1% to 10% (m/V) of a second acid;
3) optionally heating the solution obtained in step 2;
4) cooling down the solution obtained step 2 or 3;
5) separation and isolation of the solution obtained in step 4 from any precipitate formed during steps 1 to 4; and
6) dilution of the solution obtained in step 5 in water supplemented with a 0.1% to 10% (m/V) of a third acid, thereby obtaining the anti-adsorption solution.
In a further embodiment, in step 1 of the process a solution of 25 ng/ml to 1 g/ml of one or more proteins and/or peptides in water optionally supplemented with 0.1% to 10% m/V of the first acid is prepared. In still another further embodiment, in step 1 a solution of 25 μg/ml to 25 mg/ml of one or more proteins and/or peptides in water optionally supplemented with 0.1% to 1% m/V of the first acid is prepared.
In a further aspect of the process, the solution prepared in step 1 is diluted to a concentration of 2.5 ng/ml to 0.1 g/ml of one or more proteins and/or peptides by the addition of a 0.1% to 99% V/V organic solvent solution with 0.1% to 10% (m/V) of the second acid. In another embodiment, the solution prepared in step 1 is diluted to a concentration of 2.5 μg/ml to 2.5 mg/ml of one or more proteins and/or peptides by the addition of 0.1%% to 95% (V/V) organic solvent solution with 0.1% to 1% (m/V) of the second acid.
The process according to the invention may optionally comprises a heating step 3. In particular, in said step 3 the solution obtained in step 2 is heated for 1 to 1000 minutes to 30° C. to 120° C.; preferably for 1 to 10 minutes to 75° C. to 100° C.
The process according to the invention further comprises a cooling step 4. In said step 4 the solution is cooled down for 0 to 600 minutes to 40° C. to −35° C.; preferably for 5 to 60 minutes to 8° C. to −8° C.
The process according to the invention comprises a step 5 in which any precipitated formed during steps 1 to 4 is separated and isolated of the solution. Preferably, said step 5 is performed by centrifugation, filtration, or other state-of-the-art separation techniques; preferably by centrifugation. Even more preferably, it is performed by centrifugation for 1 to 600 minutes at 100 g to 100000 g; in particular for 1 to 60 minutes at 1000 g to 50000 g.
In step 6 of the process according to the invention, the solution obtained in step 5 is diluted in water optionally supplemented with a third acid; in particular in water supplemented with 0.1% to 10% (m/V) of a third acid; preferably in water supplemented with 0.% to 1% (m/V) of a third acid.
In a further aspect, the solution obtained in step 5 is diluted in water optionally supplemented with said third acid by the addition of 0.1 to 9.9 parts of the solution obtained in step 4 or 5 in 9.9 to 0.1 parts water optionally supplemented with said third acid.
In the process of the present invention an anti-adsorption solution is prepared starting from a solution of one or more proteins and/or peptides. Said one or more proteins and/or peptides are preferably selected from albumin, ovalbumin, lactalbumin, globulin, gelatin, or a combination thereof. In a preferred embodiment, the one or more proteins is albumin; preferably serum albumin; even more preferably bovine serum albumin.
In a specific exemplified embodiment of the invention, a process is disclosed comprising the following steps:
1) preparation of a solution of 25 μg/ml to 25 mg/ml serum albumin in water supplemented with 0.1% to 1% (m/V) of a first acid;
2) dilution of the solution of step 1 to a concentration of 2.5 μg/ml to 2.5 mg/ml serum albumin by the addition of 0.1% to 95% (V/V) of an organic solvent solution, said organic solvent solution comprising 0.1% to 1% (m/V) of a second acid;
3) optionally heating the solution obtained in step 2 for 1 to 10 minutes to 75° C. to 100° C.;
4) cooling down the solution obtained in step 2 or 3 for 5 to 60 minutes to 8° C. to −8° C.;
5) separation and isolation of the solution obtained in step 4 from any precipitate formed during steps 1 to 4 by centrifugation; and
6) dilution of the solution obtained in step 5 in water supplemented with 0.1% to 1% mV of a third acid, thereby obtaining the anti-adsorption solution.
In a further aspect, the solution obtained in step 4 or 5 is diluted in water supplemented with said third acid by the addition of 0.1 to 9.9 parts of the solution obtained in step 4 or 5 in 9.9 to 0.1 parts water supplemented with said third acid.
In another embodiment, the first acid, the second acid and the third acid are each independently selected from formic acid, acetic acid, trifluoroacetic acid or any other acid. In a specific embodiment, the first acid, the second acid and the third acid are the same; even more specifically, the first acid, the second acid and the third acid are formic acid.
The organic solvent that is used in the process of the present application is further selected from acetonitrile, methanol, isopropanol, denatured ethanol, or any other solvent.
Another aspect of the present invention discloses an anti-adsorption solution obtained by the process according to any of the disclosed embodiments. Also an anti-adsorption powder obtained by drying or freeze-drying said anti-adsorption solution is disclosed. Even further, said anti-adsorption powder is in combination with a suitable solvent or excipient (e.g. a preservative).
The present invention is further directed to the use of an anti-adsorption solution or an anti-adsorption powder as described herein for coating of a recipient or column. In particular, said recipient or column is made of glass or plastic. In another aspect, the use of an anti-adsorption solution or anti-adsorption powder as described herein as a diluent solution for storage, detection, identification and/or separation of peptides; preferably mainly hydrophilic peptides, is described. In another aspect, the use of an anti-adsorption solution or anti-adsorption powder as disclosed herein in peptide analytical methods is described. Said peptide analytical methods are selected from immune-based protein analysis methods, such as ELISA, western blotting, liquid chromatography; mass spectrometry; or peptidomics; preferably wherein the peptide analytical methods are selected from liquid chromatography, mass spectrometry and peptidomics.
In said uses, the anti-adsorption solution can further be combined with a solvent, in particular an organic solvent.
In another aspect, a method for the separation and/or detection of peptides e.g. in a sample is disclosed, wherein the peptides/sample are/is added to or diluted in an anti-adsorption solution as described herein, followed by liquid chromatography optionally followed by mass spectrometry. Preferably, a first mobile phase solvent (mobile phase A solvent) and a second mobile phase solvent (mobile phase B solvent) are used in said method. Further, the liquid chromatography can be performed in gradient mode or in HILIC mode. In still another embodiment, the first mobile phase solvent and the second mobile phase solvent in said method comprise a mixture of acetonitrile and DMSO; said mixture preferably supplemented with water, in particular supplemented with acidified water. In an even more preferred embodiment, the water is acidified with formic acid or any other liquid chromatography-compatible known acid. Said method is further performed in a reversed-phase system. In another embodiment, the first mobile phase solvent in said method is a solvent comprising an 80% water-acetonitrile-DMSO solution (93-2-5% V/V). In still another embodiment, the second mobile phase solvent in said method is a solvent comprising a 20% water-acetonitrile-DMSO solution (2-93-5% V/V). In still another embodiment, the peptides in said method are hydrophilic peptides.
The process and anti-adsorption solution, also referred herein as anti-adsorption diluent according to the present invention is now further described using the following examples.
In the examples, anti adsorption diluent and anti adsorption solution are both used, but are both referring to the anti adsorption solution according to an embodiment of the present invention.
Peptides (amino acid sequences see Table 1) were obtained following customized peptide synthesis from GL Biochem (Shanghai, China) or China Peptides (Shanghai, China). Acetonitrile (LC-MS grade), formic acid and trifluoroacetic acid (both LC-MS grade), methanol (LC-MS grade), isopropanol (LC-MS grade) and dimethylsulfoxide (DMSO) (gas chromatography headspace grade) were all obtained from Biosolve (Valkenswaard, The Netherlands). LC-MS grade water was prepared in-house with the Arium Pro VF TOC purification system (Sartorius, Gottingen, Germany) yielding ≥18.2 MΩcm and ≤5 ppb total organic carbon quality water or commercially purchased from Biosolve (LC-MS grade). Protein LoBind centrifugation tubes were obtained from Eppendorf (Hamburg, Germany). (Ultra) high performance liquid chromatography ((U)HPLC) glass vials with preslit silicon septum (product code: 186000307C, Milford, Mass., USA) and (U)HPLC vial inserts (product code: WAT094171, Milford, Mass., USA) were purchased from Waters. Polypropylene vials with insert (product code: 90273) were purchased from Grace Drive (Columbia, Md., USA). Denatured ethanol (denatured with 1% V/V isopropanol and 1% V/V methylethylketone (MEK)+1,5-Diazabicyclo[4.3.0]non-5-ene (DBN)) (Disolol®) was purchased from Chemlab Analytical (Zedelgem, Belgium).
Bovine serum albumin (final concentration 10 mg/mL) was dissolved in water acidified with formic acid (final concentration 0.1% m/V). This solution was diluted to a concentration of 2.5 mg/mL bovine serum albumin with acetonitrile acidified with 0.1% m/V formic acid and heated for 5 min at 95° C. with subsequent cooling for 30 min on ice and centrifugation for 20 min, 4° C. at 20000 g. The obtained clear supernatant was diluted by adding 2 parts of the supernatant to 1 part of water acidified with 0.1% m/V formic acid to obtain the anti-adsorption diluent.
During the experiment, certain ultrahigh performance liquid chromatography (UHPLC) vials and inserts were coated by being completely filled with the aforementioned anti-adsorption diluent. The vials were capped and vortexed and incubated for 2 hours at room temperature, emptied after the 2 hour incubation period and tapped dry on a paper towel.
The anti-adsorption diluent was prepared from Bovine Serum Albumin originating from either Merck (product code: 1.12018.0100), referred to as Source 1, Sigma-Aldrich (product code: A3803), referred to as Source 2, and Sigma-Aldrich (product code A9647), referred to as Source 3. The specific source is mentioned throughout the examples wherever applicable. Ovalbumin and lactalbumin were also purchased from Sigma-Aldrich.
The peptide with amino acid sequence MFPTIPLSRLFDNAMLRAH (SEQ ID No: 1) was stored in uncoated (U)HPLC vial inserts at a concentration of 100 ng/mL in 2 different solvents for a total of approximately 2 h. Solvent 1 consisted of water/acetonitrile (50/50) (V/V)+0.1% (m/V) formic acid; solvent 2 consisted of anti-adsorption diluent, hence meeting the exact organic/inorganic solvent composition of solvent 1. The vials were stored in the UHPLC autosampler compartment during analysis and at 0 min a vial containing solvent 1 and 100 ng/mL peptide was injected onto the UHPLC-MS/MS to serve as reference. The peptide recovery was calculated by dividing the peptide peak area of each time point and condition by the peptide peak area of sample 0 min in solvent 1. Appropriate blank samples were first subjected to the UHPLC-MS/MS for evaluation of interfering substances. This experiment was performed in uniplicate.
The 3 h peptide stability was evaluated by high performance liquid chromatography equipped with a photo diode array detector.
UHPLC-MS/MS of peptide MFPTIPLSRLFDNAMLRAH was conducted with an Acquity H-class quaternary solvent manager, connected to an Acquity Xevo TQ-S triple quadrupole mass spectrometer (Waters, Milford, Mass., USA). The column compartment was kept at 45° C. and the sample compartment at 20° C. Mobile phase A consisted of water/acetonitrile/dimethylsulfoxide 90/5/5 V/V/V supplemented with 0.1% m/V formic acid and mobile phase B consisted of water/acetonitrile/dimethylsulfoxide 5/90/5 V/V/V supplemented with 0.1% m/V formic acid. Chromatography was performed with an Acquity UHPLC BEH300 C18 column (2.1×100 mm, 1.7 μm particle size) (Waters) protected with a suitable guard column. An isocratic period was maintained during 1.5 min at 100% mobile phase A, followed by a linear decrease to 40% mobile phase A at 6.5 min. From 6.5 min to 7.0 min, the fraction of mobile phase A was lowered to 0%, maintained during 1 min (8.0 min time point) and followed by returning to starting conditions after 0.5 min. The starting conditions were maintained until 15.0 min prior to starting a new analytical run. The needle wash (during 6 sec post-injection) consisted of water/acetonitrile/dimethylsulfoxide (45/45/10) (V/V/V) supplemented with 0.1% (m/V) formic acid; methanol was applied as purge solvent and a 90/10 water/methanol (V/V) mixture as seal wash. The mass spectroscopic settings are provided in Table 2. Per analytical run, 2 μL was injected onto the column. Anti-adsorption diluent Source 1 was used during this experiment.
The peptide stability of peptide MFPTIPLSRLFDNAMLRAH (SEQ ID No: 1) was evaluated with HPLC-PDA and the Vydac Everest C18 column. The analytical solution (1 mg/mL) in acetonitrile/water (V/V)+0.1% m/V formic acid (i.e. matching solvent composition as the anti-adsorption diluent without hydrolysate components) was chromatographed with the gradient provided in Table 3. Analysis was performed with a Waters Alliance 2695 HPLC with a Waters 2695 Separations Module, combined with a Flow Through Needle, and a Waters 2996 Photodiode Array Detector with Empower 2 software for data acquisition (Waters, Milford, Mass., USA).
The peptide was injected at 0 h and 3 h. No additional peaks (0.5% reporting threshold) emerged after the 3 h incubation period at 20° C. A recovery (3 h/0 h×100) of 101% was observed (see
36 model peptides were selected for evaluation of the anti-adsorption diluent general functionality. The most suitable solvent composition and need of vial coating with the anti-adsorption diluent was evaluated via a D-optimal design model generated by Modde software (Umetrics, Umea, Sweden). The design is provided in Table 4.
The peptides were analyzed at the concentration specified in Table 5. For model optimization, the analysis wizard was used. In brief, the data were first visually controlled for outliers using the replicate plot; secondly, the data were transformed whenever deemed necessary (e.g. logarithmic transformation) when the histogram demonstrated this necessity. In the next step, the non-significant model terms (i.e. those not contributing to a higher R2 and/or Q2) were removed via the coefficient plot. Outliers in the residuals normal probability plot and the observed versus predicted plot were removed. The optimum was calculated using the optimizer tool of the Modde software.
Using the same UHPLC-MS/MS apparatus as previously described in the proof of principle, the column compartment was kept at 60° C. and the sample compartment at 10° C. respectively. An Acquity UHPLC BEH300 C18 (2.1×100 mm; 1.7 μm) column equipped with a suitable guard column or an Acquity UHPLC BEH Amide (2.1×100 mm; 1.7 μm) column equipped with a suitable guard column were employed for chromatographic separation and were both obtained from Waters (Milford, Mass., USA). Mobile phase A consisted of water/acetonitrile/dimethylsulfoxide 93/2/5 (V/V/V) supplemented with 0.1% (m/V) formic acid, while mobile phase B consisted of water/acetonitrile/dimethylsulfoxide 2/93/5 (V/V/V) supplemented with 0.1% (m/V) formic acid. The gradient composition for both column systems is given in Table 6. Per analytical run, 10 μL of the analytical sample solution was injected onto the column. The peptides analyzed using the HILIC amide or C18 column system are mentioned in Table 7. Anti-adsorption diluent Source 1 was used during this experiment.
The mass spectrometer settings are provided in Tables 8 and 9.
The peptide MRM's are provided in Table 9. Per peptide, a quantifier and qualifier were monitored simultaneously. To minimize overlap of the different peptides and hence reducing sensitivity, the peptides were divided over different analytical runs.
Principal component analysis and hierarchical cluster analysis. Descriptor calculation (Dragon 5.5 (Talete, Milan, Italy), HyperChem 8.0 and Marvin Beans 5.3.3 (Chemaxon, Budapest, Hungary) software), principal component analysis (SIMCA 15 (Sartorius Stedim Biotech, Gottingen, Germany)) and hierarchical cluster analysis (SPSS 25 (IBM, IL, USA)) were carried out as previously described by Wynendaele et al. [18] (included herein by reference).
Composition of the anti-adsorption diluent. Three batches of anti-adsorption diluent Source 1 were prepared as previously described. The anti-adsorption diluents were analyzed using the high-resolution Synapt G2Si (Waters) mass spectrometer (HRMS) equipped with a nanosource (lock spray) operated in positive ion mode in the HDDA-ion mobility mode. Chromatography was performed using nanoAcquity (Waters) equipment with a Acquity UHPLC M-Class HSS T3 column (75 μm×250 mm; 1.8 μm) preceded by a nanoAcquity UHPLC Symmetry C18 trap column (180 μm×20 mm; 100 Å; 5 μm). Onto the trap column, 8 μL of sample was injected and elution was performed during a 60 min run time, starting at 99% mobile phase A (97/3 V/V water/DMSO supplemented with 0.1% m/V formic acid) and 1% mobile phase B (acetonitrile supplemented with 0.1% m/V formic acid) during an initial isocratic phase of 0.1 min. Subsequently, a gradient was applied to obtain 60% mobile phase A at 30 min and 15% mobile phase A at 32 min. Mobile phase A was kept at 15% during 7 min followed by returning to starting conditions at 40 min and kept for the remaining 20 min at this solvent composition. The flow rate was set to 0.3 μL/min during the entire run with a trapping flow rate of 8 μL/min with a 5 min sample loading time (sample loading was performed with 99.5% mobile phase A). Wash solvents consisted of a weak wash solvent (water) and a strong wash solvent (acetonitrile). The column was maintained at 40° C. and the sample compartment at 4° C. The mass spectrometer settings are provided in Table 10.
De novo sequencing was performed with PEAKS software [19]. Peptides with an average local confidence (ALC) exceeding 80% were considered as sufficiently identified.
Matrix effects of the anti-adsorption diluent. In brief, the peptide EMRKSNNNFFHFLRRI (Q46; SEQ ID No. 7) was post-column infused whilst anti-adsorption diluent was chromatographed using the aforementioned UHPLC-MS/MS method (see pivotal experiment).
Functional evaluation of anti-adsorption diluent from 3 sources. The functionality of anti-adsorption diluent Source 1, Source 2, and Source 3 was evaluated via the peptide MFPTIPLSRLFDNAMLRAH (SEQ ID No. 1). The peptide was diluted in either solvent (50/50 V/V water/acetonitrile supplemented with 0.1% m/V formic acid) or in 1 of the 3 anti-adsorption diluent sources to a peptide concentration of 100 ng/mL. The solution was either transferred to an insert and immediately analyzed via UHPLC-MS/MS or repeatedly transferred to inserts (5 inserts in total), with analysis of the 5th insert. UHPLC-MS/MS was carried out as previously discussed in the proof of principle (pilot experiment)-section. To prevent peptide degradation, each sample was prepared immediately prior to injection. Per condition 3 replicates were analyzed.
Anti-adsorption diluent applicability for polypropylene inserts. The functionality of the anti-adsorption diluent Source 1 in polypropylene inserts was evaluated via the peptide MFPTIPLSRLFDNAMLRAH (100 ng/mL). The peptide was analyzed in (I) a glass insert with 50/50 V/V water/acetonitrile+0.1% m/V formic acid, (II) a polypropylene insert with 50/50 V/V water/acetonitrile+0.1% m/V formic acid, (III) a glass insert with anti-adsorption diluent Source 1, and (IV) a polypropylene insert with anti-adsorption diluent. The UHPLC-MS/MS method provided in the proof of principle experiment was applied. The experiment was performed in triplicate.
Alternative AAD's were prepared as follows, all AAD's were compared to the AAD as previously described. The differences with the aforementioned process are in bolt.
AAD from Different Protein Sources and/or Other Organic Solvents
Ovalbumin or lactalbumin (final concentration 10 mg/mL) was dissolved in water acidified with formic acid (final concentration 0.1% m/V). This solution was diluted to a concentration of 2.5 mg/mL lactalbumin or ovalbumin with acetonitrile, denatured ethanol, or isopropanol acidified with 0.1% m/V formic acid and heated for 5 min at 95° C. with subsequent cooling for 30 min on ice and centrifugation for 20 min, 4° C. at 20000 g. The obtained clear supernatant was diluted by adding 2 parts of the supernatant to 1 part of water acidified with 0.1% m/V formic acid to obtain the anti-adsorption diluent. Lactalbumin is referred to as LAC, ovalbumin as OVAL, denatured ethanol as EtOH, acetonitrile as ACN, and isopropanol as IPA.
AAD with Trifluoroacetic Acid
Bovine serum albumin (final concentration 10 mg/mL) was dissolved in water acidified with trifluoroacetic acid (final concentration 0.1% m/V). This solution was diluted to a concentration of 2.5 mg/mL bovine serum albumin with acetonitrile acidified with 0.1% m/V trifluoroacetic acid and heated for 5 min at 95° C. with subsequent cooling for 30 min on ice and centrifugation for 20 min, 4° C. at 20000 g. The obtained clear supernatant was diluted by adding 2 parts of the supernatant to 1 part of water acidified with 0.1% m/V fluoroacetic acid to obtain the anti-adsorption diluent referred to as AAD BSA+TFA.
AAD Precipitated with 50/50 V/V Water/Acetonitrile+0.1% m/V Formic Acid
Bovine serum albumin (final concentration 10 mg/mL) was dissolved in water acidified with formic acid (final concentration 0.1% m/V). This solution was diluted to a concentration of 2.5 mg/mL bovine serum albumin with acetonitrile acidified with 0.1% m/V formic acid to obtain a ratio of 50/50 V/V water/acetonitrile+0.1 m/V formic acid (previously 25/75 V/V) and heated for 5 min at 95° C. with subsequent cooling for 30 min on ice and centrifugation for 20 min, 4° C. at 20000 g. The obtained clear supernatant was diluted by adding 2 parts of the supernatant to 1 part of water acidified with 0.1% m/V formic acid to obtain the anti-adsorption diluent referred to as AAD BSA+FA 50/50 V/V ACN/water.
AAD Precipitated with 10/90 V/V Water/Acetonitrile+0.1% m/V Formic Acid
Bovine serum albumin (final concentration 25 mg/mL) was dissolved in water acidified with formic acid (final concentration 0.1% m/V). This solution was diluted to a concentration of 2.5 mg/mL bovine serum albumin with acetonitrile acidified with 0.1% m/V formic acid to obtain a ratio of 10/90 V/V water/acetonitrile+0.1 m/V formic acid (previously 25/75 V/V) and heated for 5 min at 95° C. with subsequent cooling for 30 min on ice and centrifugation for 20 min, 4° C. at 20000 g. The obtained clear supernatant was diluted by adding 2 parts of the supernatant to 1 part of water acidified with 0.1% m/V formic acid to obtain the anti-adsorption diluent referred to as AAD BSA+FA 10/90 V/V ACN/water.
AAD without Formic Acid
Bovine serum albumin (final concentration 10 mg/mL) was dissolved in water. This solution was diluted to a concentration of 2.5 mg/mL bovine serum albumin with acetonitrile and heated for 5 min at 95° C. with subsequent cooling for 30 min on ice and centrifugation for 20 min, 4° C. at 20000 g. The obtained clear supernatant was diluted by adding 2 parts of the supernatant to 1 part of water obtain the anti-adsorption diluent referred to as AAD BSA-FA.
AAD without Heating
Bovine serum albumin (final concentration 10 mg/mL) was dissolved in water acidified with formic acid (final concentration 0.1% m/V). This solution was diluted to a concentration of 2.5 mg/mL bovine serum albumin with acetonitrile acidified with 0.1% m/V formic acid and kept at room temperature for 5 min with subsequent cooling for 30 min on ice and centrifugation for 20 min, 4° C. at 20000 g. The obtained clear supernatant was diluted by adding 2 parts of the supernatant to 1 part of water acidified with 0.1% m/V formic acid to obtain the anti-adsorption diluent referred to as AAD BSA+FA WITHOUT heating.
UHPLC-MS/MS analysis was performed as described in the proof of concept (pivotal experiment)-section. All were analyzed as 6 technical replicates and standardization occurred against the aforementioned AAD (i.e. Bovine serum albumin Source 2 (final concentration 10 mg/mL) was dissolved in water acidified with formic acid (final concentration 0.1% m/V). This solution was diluted to a concentration of 2.5 mg/mL bovine serum albumin with acetonitrile acidified with 0.1% m/V formic acid and heated for 5 min at 95° C. with subsequent cooling for 30 min on ice and centrifugation for 20 min, 4° C. at 20000 g. The obtained clear supernatant was diluted by adding 2 parts of the supernatant to 1 part of water acidified with 0.1% m/V formic acid to obtain the anti-adsorption diluent referred to as control.)
Standardization was obtained by dividing the peptide peak area of each injection by the mean peptide peak area of the control (i.e. mean 100%).
UHPLC-MS/MS method development for the peptide with amino acid sequence MFPTIPLSRLFDNAMLRAH proved challenging. Initially, the peptide peak decreased as a function of time, which we attributed to glass adsorption (see
Therefore, a novel UHPLC-MS/MS compatible anti-adsorption diluent was explored. The anti-adsorption diluent contains a bovine serum albumin (BSA) hydrolysate and is obtained by boiling a BSA solution and precipitating the protein with acetonitrile, rendering the remaining solution suitable to be directly applied in UHPLC-MS/MS analysis. The previously observed glass adsorption of the peptide MFPTIPLSRLFDNAMLRAH was completely abolished by using this novel anti-adsorption diluent (see
The traditional diluent consisting of water/acetonitrile+0.1% m/V formic acid demonstrated a decreasing peak area over time (
The presence of interfering substances in the anti-adsorption diluent (Source 1) was first evaluated by injecting the anti-adsorption diluent as such. No interfering substances were observed by applying the peptide specific MRM settings. The peptide demonstrated no appreciable adsorption during more than 2 hours when kept in the presence of the anti-adsorption diluent (recovery approximately 110%), confirming the suitability of this anti-adsorption diluent for this specific peptide. Keeping this peptide in the same solvent composition but without anti-adsorption components, yielded a recovery after 2 hours below 10%.
To further investigate the wide applicability of this novel anti-adsorption diluent, 36 peptides were selected. Selection of these peptides was made by the in-house necessity to develop bioanalytical methods for these peptides. Via a design of experiments approach, the most suitable injection solvent for each peptide was examined by UHPLC-MS/MS in the pM to nM-range. Via a D-optimal design, the quantitative influence of 4 solvent components was evaluated: (I) the fraction of water (25-100% V/V), (II) the fraction of acetonitrile (0-75% V/V), (III) the fraction of anti-adsorption diluent (Source 1), obtained as described in the materials and methods section (0-75% V/V), and (IV) the fraction of formic acid (0.025-7.5% m/V). The necessity of prior coating the vial with anti-adsorption diluent was also evaluated in the same D-optimal design model. Prior to this experiment, the LC-MS suitability of the anti-adsorption diluent was evaluated by injecting the anti-adsorption diluent as such. None of the 72 MRM's (2/peptide) showed any interference. The influence of the solvent composition on the adsorption of each peptide was evaluated using the peptide peak area as response. The model validity parameters (R2 and Q2) are given together with the predicted optimum condition (vial+solvent composition) per peptide in Table 11.
Peptides were added to the (U)HPLC vial insert in 25 μL water+0.1% m/V formic acid. The other 75 μL consisted of the solvents specified in the D-optimal design. Hence, if a predicted injection solvent consists of 0.1 fraction acetonitrile and 0.9 fraction anti-adsorption diluent the predicted most suitable injection solvent of that peptide consists of 25 μL water+0.1% (m/V) formic acid+75 μL*0.1=7.5 μL acetonitrile and 75 μL*0.9=67.5 μL anti-adsorption diluent.
The model characteristic R2 is a measure for the model fit whilst Q2 illustrates the predictive power of the model. A model with proper predictive power is determined by a Q2 value exceeding 0.5. Log(D), with D meaning the normalized distance to the target, is a quality attribute to describe the closeness to the specification limits. The absolute minimal Log(D) value is −10, meaning an on target prediction. DPMO (defects per million opportunities outside specifications) and CpK (Process Capability Indices) are probabilities of failure. The higher the DPMO or the lower the CpK, the higher the chance the predictions will be outside the specifications. The 36 individual models yield an average Q2 of 0.54. All models exceed Q2 of 0.1 (lowest Q2=0.162 for peptide Q52), thus all models are significant and 20 peptides out of 36 peptides have a good predictive power exceeding a Q2 of 0.5.
Out of 36 peptides, modeling predicted the anti-adsorption diluent Source 1 to be beneficial to 19 peptides (approximately 50%). Coating of the vials with anti-adsorption diluent Source 1 also proved beneficial for 16 out of 36 peptides, with or without simultaneous presence of the anti-adsorption diluent Source 1 in the injection solvent (see
Principal component analysis of the 36 peptides was carried out with 446 descriptors for each peptide. The score plot is depicted in
By plotting PC1 versus PC3, 2 “physicochemical” clusters are distinguished. These 2 clusters concur with the beneficial effect of the anti-adsorption diluent. In cluster E, all peptides (except Q206, i.e. 18 out of 19 peptides) do benefit from the anti-adsorption diluent to reduce glass adsorption. On the other hand, the peptides being part of cluster D do generally not benefit from this anti-adsorption diluent. The first 3 Principal Components of the model account for goodness of fit of approximately 60% and a predictive power of approximately 50%, rendering it an appropriate model.
The loading plot (data not shown) shows that both the first and second principal components are majorly determined by 3D MoRSE, 2D atom pairs, 2D autocorrelation, GETAWAY, Burden eigen values and geometrical descriptors. These descriptors do divide the peptides into 2 clusters when PC1 is plotted against PC3. Amongst these descriptors, log P descriptors are found to determine the first principal component amongst others. Examining the Log P of the investigated peptides showed that on average the peptides in cluster C and B of
Peptides being part of cluster B are characterized by a median molecular weight of 576 Da, have an average isoelectric point of 6.2, and most peptides possess at least 1 chargeable amino acid side chain (positive or negative charge). Peptides in cluster E on the other hand are considerably larger than these in cluster D with a median molecular mass of 2188 Da, do also have a higher isoelectric point (median 10.7) and multiple chargeable amino acid side chains (positive or negative charge). The percentage of polar uncharged amino acids does not differ amongst the different clusters.
Various mechanisms have been attributed to glass adsorption, such as hydrogen bound formation with the glass silanol functional moieties. Therefore, the number of hydrogen bound donors (bound to oxygen or nitrogen atoms) and acceptors (oxygen or nitrogen atoms) was evaluated. The peptides in cluster E have a median number of hydrogen bound donors of 38 and hydrogen bound acceptors of 53 respectively. Peptides from cluster D on the other hand, have a medium number of hydrogen bound donors of 11 and acceptors of respectively 17 without considerable difference among the peptides being part of cluster A and B regarding hydrogen bound donors or acceptors. Given the physicochemical nature of glass adsorption, it is hypothesized that peptides that own a relative high number of hydrogen donors and/or acceptors do generally benefit from the anti-adsorption diluent. The peptide MFPTIPLSRLFDNAMLRAH, that also benefits from the anti-adsorption diluent (see proof of principle experiments), has a calculated number of hydrogen bound donors of 32 and hydrogen bound acceptors of 50, thus in line with the observation made for the proof of concept peptides. In general, peptides having a relative high isoelectric point, molecular mass and/or relative large number of hydrogen donor and acceptor bounds might be considered as candidate peptides benefiting this anti-adsorption diluent to reduce glass adsorption.
The identity of the constituting peptides in anti-adsorption diluent Source 1 was elucidated via in silico de novo peptide sequencing, following high resolution mass spectroscopy. In total, 398 peptides were identified. The smallest peptide is composed of 4 amino acids and the largest of 22 amino acids. The 10 most abundant peptides are illustrated in Table 14. The peptide mixture coming from the specific protein treatment has remarkable anti-adsorption properties.
The matrix effect of the anti-adsorption diluents (i.e. Source 1, Source 2, and Source 3) was examined with 1 exemplary peptide (EMRKSNNNFFHFLRRI; Q46) and evaluated by post-column infusion of the aforementioned peptide. More specific, the peptide Q46 was post-column infused at 5 μL/min and a concentration of 1 μM. Concomitantly whilst the peptide was infused, the anti-adsorption diluents were chromatographically separated (10 μL injection volume) using the peptide specific chromatographic and mass spectrometric settings.
The matrix effects on peptide Q46 were examined using the UHPLC-MS/MS settings outlined in the ‘Proof of concept (pivotal experiment)’ section. Each anti-adsorption diluent (3 sources) was injected in triplicate for each peptide and matrix effects were monitored using the peptide quantifier MRM as previously provided.
Matrix effects were observed (as demonstrated in
Bovine Serum Albumin Origin does not Significantly Influence Functionality
The pilot and pivotal experiments were carried out using anti-adsorption diluent originating from Source 1. Since Bovine Serum Albumin can differ amongst suppliers, anti-adsorption diluent was prepared originating from 3 sources, referred to as Source 1, Source 2, and Source 3. To evaluate the effect of the Bovine Serum Albumin origin on the anti-adsorption functionality, (I) the effect of the anti-adsorption diluent origin on adsorption of the peptide MFPTIPLSRLFDNAMLRAH (100 ng/mL analytical concentration) was evaluated and (II) the peptide solution was repeatedly transferred from one insert to another (5 inserts in total) with subsequent analysis of the 5th insert.
Previous experiments were all conducted using glass inserts. Plastic vials and inserts are also widely used for the chromatography of peptides. Therefore, the applicability of the anti-adsorption diluent was evaluated using a polypropylene insert. The peptide MFPTIPLSRLFDNAMLRAH (100 ng/mL) was either analyzed using a glass or polypropylene insert with or without anti-adsorption diluent (see
As can be observed from
The main variables that contribute to the AAD are: (I) protein source, (II) organic solvent, (III) acid, and (IV) heating. When changing acetonitrile to either isopropanol or denatured ethanol, a comparable functionality is observed as does simultaneous alteration of the protein source (see
Changing the acid does also influence (but not abolish) the functionality as demonstrated in
Altering the organic solvent percentage does also render functional AAD (see
The variable heating was investigated by preparing AAD with and without heating while all other parameters were kept unchanged. As can be appreciated from
Peptide analysis in the low concentration range can be challenging due to adsorption to the analytical vials. Various anti-adsorption approaches are already reported. Here, a new approach is added to the set of anti-adsorption methods. This anti-adsorption diluent is based on a protein (e.g. bovine serum albumin) hydrolysate and is UHPLC-MS/MS compatible. Additionally, the diluent is easily formic acid) to increase its use-flexibility. The suitability to alleviate the adsorption of peptides to glass vials was demonstrated in a set of 36 representative peptides.
This anti-adsorption diluent could also have a potential place in the peptidomics field. Since some peptides are abundant in a low concentration and might show adsorption to the glass vial, they might be missed during untargeted peptide analysis. By applying this anti-adsorption diluent, this analytical artifact can be decreased. In targeted mode, the anti-adsorption diluent did not interfere in the peptide specific MRM settings of the 36 investigated peptides. As such, this anti-adsorption diluent has a place in different peptide analysis applications, such as targeted or untargeted peptidomics. Altering the process variables, i.e. (I) protein, (II) organic solvent and solvent percentage, (III) kind of acid and acid presence, and (IV) heating does in all cases render a functional AAD. However, eliminating the heating step as does altering the organic solvent percentage renders a less, but still, functional AAD.
| Number | Date | Country | Kind |
|---|---|---|---|
| 19199367.4 | Sep 2019 | EP | regional |
| Filing Document | Filing Date | Country | Kind |
|---|---|---|---|
| PCT/EP2020/076754 | 9/24/2020 | WO |
