Patent Application
20220220218
This application incorporates by reference the material in the ASCII text file titled English_Translation_of_Sequence_Listing.txt, which was created on Apr. 18, 2021 and is 88.7 KB.
The present disclosure belongs to the field of biotechnology. More specifically, the present disclosure relates to anti-CD73 antibodies and applications thereof.
The descriptions herein only provide background information about the present disclosure, and do not necessarily constitute prior art.
CD73, also known as extracellular-5′-nucleotidase (Ecto-5′-Nucleotidase, EC3.1.3.5, ecto-5′-NT), is a glycoprotein anchored to the membrane through glycosyl phosphatidyl inositol (GPI). CD73 is widely expressed on the surface of a variety of tissues and cells in the human body, such as endothelial cells, lymphocytes, Treg and others. Recently, studies have found that CD73 is highly expressed in a variety of tumors. A large number of studies have confirmed that CD73 is closely related to the occurrence and development of tumors.
The gene encoding human CD73 is located on chromosome 6q14-q21. The evolution of CD73 is relatively conservative, and the DNA sequence encoding human CD73 has 86% homology with the murine DNA sequence. The CD73 gene consists of 57 kbp and the coding region is 1,725 bp in length. The G+C ratio in the promoter region sequences of CD73 genome is relatively higher, and CD73 genome comprises many binding sites for transcription factors, including one cAMP response element (eRE), five Sp-1 binding sites, two Ap-2 binding sites, one hypoxia response element (HRE), and one TCF/LEF binding site. There are three GATA boxes, two MyoD sites, IgH and NF-Kb binding sites, and 3 C-EBP sites in the upstream region of the promoter. The human CD73 precursor protein consists of 574 amino acid residues. After the amino acid residues 1-26 at the N-terminus and the amino acid residues 550-574 at the C-terminus of the CD73 molecule are excised, the amino acid residues 27-549 constitute a mature CD73, forming a subunit with the molecular weight of about 70 KD. Two subunits constitute a homodimer with biological activity. The mature CD73 includes five N-linked glycosylation sites; the C-terminal amino acid sequence is GPI anchor sequence, in which serine on position 523 serves as an anchor site, which is anchored to the outer membrane of the cell through GPI. CD73 can be shed from the surface of the plasma membrane due to the hydrolysis of GPI by endogenous phospholipase C, thereby reducing the production of adenosine.
CD73 is widely expressed on the surface of tissue cells such as human endothelial cells and lymphocytes. CD73 has extracellular nucleotidase activity and hydrolyzes AMP to produce adenosine, which has immunosuppressive effect. The binding of adenosine to the receptor can promote angiogenesis, prevent tissue ischemia-reperfusion injury, and inhibit inflammation and immune response. Recently, it has been discovered that adenosine can inhibit the pro-inflammatory response of human vascular endothelial cells. CD73 also has non-hydrolase activity and is involved in cell adhesion and signal transduction.
CD73 plays an important role in the occurrence and development of tumors. CD73 is involved in tumor angiogenesis. Related studies have shown that CD73 can promote the neovascularization in vivo in C57BL/6 mice bearing B16F10 melanoma cells. Pharmacological inhibition of CD73 can reduce the number of new blood vessels and hinder the maturation of new blood vessels, thereby reducing the angiogenesis of melanoma. Another study has found that treating tumor-bearing mice with anti-CD73 monoclonal antibody can reduce angiogenesis of tumor. CD73 can also promote the migration of microvascular endothelial cells to form a tubular structure, based on its enzymatic and non-enzymatic functions. CD73 induces the growth of epithelial cells by up-regulating cell proliferation protein D 1. In addition, the adenosine produced by CD73 can promote the production and release of VEGF, and support the formation of new blood vessels, through tissue hypoxia caused by A2A receptors.
Next, studies in vivo and in vitro have shown that CD73 can promote the growth of tumor cells. The research results of ZHI et al. (Cancer Sci, 2010, 101(12): 2561-2569) showed that inhibition of the CD73 expression by siRNA can block the cell cycle and apoptosis, thereby inhibiting the proliferation and differentiation of breast cancer cells. Use of 5′-α, β-methylene-adenosine diphosphate (APCP), a specific inhibitor of CD73 enzyme activity, can also inhibit the proliferation of tumor cells in a dose-dependent manner. Over-expression of CD73 in breast cancer cells transfected with CD73 increased cell viability and promoted the cell cycle. Some researchers have found that APCP can reduce the proliferation of glioma cells by 30%, while adenosine can increase the cell proliferation by 35%. Stagg J et al. (PNAS, 2010, 107(4):1547-1552) has found that the activity of CD73 is significantly increased in bladder cancer cells with a higher degree of malignancy, confirming that the purine signaling pathway promotes the formation of bladder tumors. In addition, CD73 can also promote the growth of colon cancer cells, melanoma cells and lymphoma cells. Recent studies have found that leukemic T lymphocytes with up-regulated CD73 expression can specifically inhibit TRAIL-induced apoptosis and induce resistance to multiple drugs in cells, thereby promoting the survival of tumor cells.
In addition, tumor-derived CD73 expressed on the surface of tumor cells is an important reason for tumor immune escape. RYZHOV et al. (J Immunol, 2011, 187(11):6120-6129) also found that CD73 in tumors is related to the penetration and aggregation of MDSCs, whereas MDSCs are immature bone marrow cells that inhibit T cell activation. The adenosine in tumor microenvironment can also help Treg to suppress immune activity. Therefore, CD73 can indirectly promote the progression of tumor by suppressing the immune response.
In addition to the above-mentioned role in tumors, CD73 has also been found to be closely related to tumor metastasis. The primary condition required by tumor metastasis refers to the acquisition of aggressive phenotype so as to increase the migration ability of tumor cells. The association between CD73 and metastasis-related markers has been discovered. CD73 level is significantly higher in patients with lymphatic metastatic prostate cancer compared to non-metastatic prostate cancer, indicating that CD73 may play an important role in the process of tumor cell metastasis. XIONG et al. (Cell Tissue Res, 2014, 355(2):365-374) has demonstrated that CD73 can promote the metastasis and invasion by inducing the mesenchymal transformation of tumor cells. STAGG and Wang et al. (Cancer Res, 2011, 71(8): 2892-2900; J Cancer Res Clin Oncol, 2008, 134(3): 365-372) found that in vivo CD73-deficient mice showed resistance to the occurrence of lung metastatic tumor after intravenous injection of B16F10 melanoma, and the CD73-deficient host can enhance the homing of tumor T cell-specific antigens into the tumor. Clinical studies in tumor patients have also revealed that the overexpression of CD73 in tumors is associated with the metastasis of gastric cancer, prostate cancer and malignant melanoma. The above results prove that both host CD73 and tumor CD73 can significantly promote tumor metastasis, whereas the resistance to tumor metastasis in CD73-deficient host is related to the enhanced endogenous anti-tumor immunity.
Currently, CD73-related antibodies have been reported in patent applications such as U.S. Pat. Nos. 9,938,356, 9,605,080, WO2016075099, WO2017152085, WO2017064043 and WO2018013611.
The inventors of the present application have developed new anti-CD73 antibodies or antigen-binding fragment thereof after a large number of experiments, in which:
In some embodiments, the present disclosure discloses an anti-CD73 antibody or an antigen-binding fragment thereof specifically binding to human CD73, wherein the antibody comprises a light chain variable region and a heavy chain variable region, wherein:
the light chain variable region comprises light chain LCDR1, LCDR2 and LCDR3 as shown in SEQ ID NOs: 27, 28 and 29 respectively, or comprises LCDR variant(s) having no more than 3 amino acid mutation(s) relative to the sequence as shown in SEQ ID NOs: 27, 28 and 29 respectively; and
the heavy chain variable region comprises:
i) HCDR1, HCDR2 and HCDR3 as shown in SEQ ID NOs: 10, 11 and 12 respectively or HCDR variant(s) having no more than 3 amino acid mutation(s) relative to the sequence as shown in SEQ ID NOs: 10, 11 and 12 respectively; or
ii) HCDR1, HCDR2 and HCDR3 as shown in SEQ ID NOs: 16, 17 and 18 respectively or HCDR variant(s) having no more than 3 amino acid mutation(s) relative to the sequence as shown in SEQ ID NOs: 16, 17 and 18 respectively; or
iii) HCDR1, HCDR2 and HCDR3 as shown in SEQ ID NOs: 22, 67 and 24 respectively or HCDR variant(s) having no more than 3 amino acid mutation(s) relative to the sequence as shown in SEQ ID NOs: 22, 67 and 24 respectively.
In some embodiments, “no more than 3 amino acid mutation(s)” described above means 3, 2, 1, or 0 amino acid mutation(s).
In some embodiments, the anti-CD73 antibody or the antigen-binding fragment thereof of the present disclosure binds to human CD73 with a dissociation equilibrium constant equal to or less than 10−7 M; and in some embodiments, binds to human CD73 with a dissociation equilibrium constant equal to or less than 10−8M, 10−9M, 10−10 M or 10−11 M.
In some embodiments, the anti-CD73 antibody or the antigen-binding fragment thereof of the present disclosure comprises:
iv) HCDR1, HCDR2, HCDR3, LCDR1, LCDR2 and LCDR3 as shown in SEQ ID NOs: 10, 11, 12, 13, 14 and 15, respectively; or
v) HCDR1, HCDR2, HCDR3, LCDR1, LCDR2 and LCDR3 as shown in SEQ ID NOs: 16, 17, 18, 19, 20 and 21, respectively; or
vi) HCDR2 as shown in SEQ ID NOs: 23, 68, 69, 70, 71, 72, 73, 74, 75 or 76 and HCDR1, HCDR3, LCDR1, LCDR2 and LCDR3 as shown in SEQ ID NOs: 22, 24, 25, 14 and 26, respectively.
In some embodiments, the anti-CD73 antibody or the antigen-binding fragment thereof of the present disclosure comprises:
vii) HCDR1, HCDR2, HCDR3, LCDR1, LCDR2 and LCDR3 as shown in SEQ ID NOs: 22, 23, 24, 25, 14 and 26, respectively; or
viii) HCDR1, HCDR2, HCDR3, LCDR1, LCDR2 and LCDR3 as shown in SEQ ID NOs: 22, 71, 24, 25, 14 and 26, respectively; or
ix) HCDR1, HCDR2, HCDR3, LCDR1, LCDR2 and LCDR3 as shown in SEQ ID NOs: 22, 76, 24, 25, 14 and 26, respectively.
In some embodiments, the anti-CD73 antibody or the antigen-binding fragment thereof of the present disclosure is a recombinant antibody, preferably a murine antibody, a chimeric antibody, or a humanized antibody.
In some embodiments, the anti-CD73 antibody or the antigen-binding fragment thereof of the present disclosure is a murine or chimeric antibody selected from any anti-CD73 antibody or antigen-binding fragment thereof as defined in item A-C:
(A) an anti-CD73 antibody or an antigen-binding fragment thereof comprising a heavy chain variable region as shown in SEQ ID NO: 4 and a light chain variable region as shown in SEQ ID NO: 5;
(B) an anti-CD73 antibody or an antigen-binding fragment thereof comprising a heavy chain variable region as shown in SEQ ID NO: 6 and a light chain variable region as shown in SEQ ID NO: 7; and
(C) an anti-CD73 antibody or an antigen-binding fragment thereof comprising a heavy chain variable region as shown in SEQ ID NO: 8 and a light chain variable region as shown in SEQ ID NO: 9.
In some embodiments of the anti-CD73 antibody or the antigen-binding fragment thereof of the present disclosure, the antibody is a humanized antibody, and the light chain framework regions (FRs) and the heavy chain framework regions (FRs) of the antibody are respectively derived from human germline light chain and heavy chain or mutant sequence(s) thereof; preferably, the humanized antibody comprises any one selected from the group consisting of D-F:
(D) HCDR1, HCDR2, HCDR3, LCDR1, LCDR2 and LCDR3 as shown in SEQ ID NOs: 10, 11, 12, 13, 14 and 15, respectively, and heavy chain framework region(s) and light chain framework region(s); and
wherein the heavy chain framework region(s) comprise(s) one or more back mutation(s) selected from the group consisting of 6Q, 10G, 30K, 37V, 44G, 49G and 94G; and wherein the light chain framework region(s) comprise(s) one or more back mutation(s) selected from the group consisting of 36L, 42G, 44I, 60K, 69S, 71Y and 85D;
(E) HCDR1, HCDR2, HCDR3, LCDR1, LCDR2 and LCDR3 as shown in SEQ ID NOs: 16, 17, 18, 19, 20 and 21, respectively, and heavy chain framework region(s) and light chain framework region(s); and
wherein the heavy chain framework region(s) comprise(s) one or more back mutation(s) selected from the group consisting of 38K, 44G, 48I, 66K, 67A, 69L and 71A; and wherein the light chain framework region(s) comprise(s) one or more back mutation(s) selected from the group consisting of 36L, 42G, 44I, 66R, 71Y and 85D; and
(F) HCDR2 as shown in SEQ ID NO: 23, 68, 69, 70, 71, 72, 73, 74, 75 or 76, and HCDR1, HCDR3, LCDR1, LCDR2 and LCDR3 as shown in SEQ ID NOs: 22, 24, 25, 14 and 26 respectively, and heavy chain framework region(s) and light chain framework region(s); and
wherein the heavy chain framework region(s) comprise(s) one or more back mutation(s) selected from the group consisting of 38M, 44S, 48I, 67A, 69L, 71V, 73K, 82A R and 94T; and wherein the light chain framework region(s) comprise(s) one or more back mutation(s) selected from the group consisting of 36L, 42G, 44L, 69S, 70D and 71Y; wherein, the positions of back mutation are numbered according to the Kabat numbering criteria. In some embodiments of the anti-CD73 antibody or the antigen-binding fragment thereof of the present disclosure, the antibody comprises a heavy chain variable region as shown in SEQ ID NO: 30, 41 or 49 or variant(s) thereof.
In some embodiments of the anti-CD73 antibody or the antigen-binding fragment thereof of the present disclosure, the heavy chain variable region variant has 1-10 amino acid back mutation(s) on the FR region(s) of the heavy chain variable region as shown in SEQ ID NO: 30, 41 or 49.
In some embodiments, the heavy chain variable region variant of the present disclosure is any one selected from the group consisting of G-I:
(G) a heavy chain variable region variant, having one or more back mutation(s) selected from the group consisting of E6Q, V10G, S30K, I37V, L44G, A49G and R94G on the FR region of the heavy chain variable region as shown in SEQ ID NO: 30;
(H) a heavy chain variable region variant, having one or more back mutation(s) selected from the group consisting of R38K, R44G, M48I, R66K, V67A, I69L and R71A on the FR region of the heavy chain variable region as shown in SEQ ID NO: 41; and
(I) a heavy chain variable region variant, having one or more back mutation(s) selected from the group consisting of R38M, G44S, M48I, V67A, M69L, R71V, T73K, S82AR and R94T on the FR region(s) of the heavy chain variable region as shown in SEQ ID NO: 49.
In some embodiments, the anti-CD73 antibody or the antigen-binding fragment thereof of the present disclosure comprises a heavy chain variable region of any one selected from the group consisting of J-L:
(J) a heavy chain variable region as shown in SEQ ID NO: 30, 37, 38, 39 or 40;
(K) a heavy chain variable region as shown in SEQ ID NO: 41, 45, 46, 47 or 48; and
(L) a heavy chain variable region as shown in SEQ ID NO: 49, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65 or 66.
In some embodiments of the anti-CD73 antibody or the antigen-binding fragment thereof of the present disclosure, the antibody comprises a light chain variable region as shown in SEQ ID NO: 31, 41 or 50 or variant(s) thereof.
In some embodiments of the anti-CD73 antibody or the antigen-binding fragment thereof of the present disclosure, the light chain variable region variant has 1-10 amino acid back mutation(s) on the FR region(s) of the light chain variable region as shown in SEQ ID NO: 31, 41 or 50.
In some embodiments, the light chain variable region variant described in the present disclosure is any one selected from the group consisting of M-O:
(M) a light chain variable region variant, having one or more back mutation(s) selected from the group consisting of 36L, 42G, 44I, 60K, 69S, F71Y and T85D on the FR region(s) of the light chain variable region as shown in SEQ ID NO: 31;
(N) a light chain variable region variant, having one or more back mutation(s) selected from the group consisting of Y36L, K42G, P44I, G66R, F71Y and T85D on the FR region(s) of the light chain variable region as shown in SEQ ID NO: 42; and
(O) a light chain variable region variant, having one or more back mutation(s) selected from the group consisting of Y36L, K42G, P44L, T69S, E70D and F71Y on the FR region(s) of the light chain variable region as shown in SEQ ID NO: 50.
In some embodiments, the anti-CD73 antibody or the antigen-binding fragment thereof of the present disclosure comprises a light chain variable region of any one selected from the group consisting of P-R:
(P) a light chain variable region as shown in SEQ ID NO: 31, 32, 33, 34, 35 or 36;
(Q) a light chain variable region as shown in SEQ ID NO: 42, 43 or 44; and
(R) a light chain variable region as shown in SEQ ID NO: 50, 51, 52 or 53.
In some embodiments, the anti-CD73 antibody or the antigen-binding fragment thereof of the present disclosure comprises a heavy chain and a light chain variable region selected from the group consisting of S-U:
(S) a heavy chain variable region as shown in amino acid sequence SEQ ID NO: 30, 37, 38, 39 or 40 or having at least 95% sequence identity to SEQ ID NO: 41, 45, 46, 47 or 48, and a light chain variable region as shown in amino acid sequence SEQ ID NO: 31, 32, 33, 34, 35 or 36 or having at least 95% sequence identity to SEQ ID NO: 42, 43 or 44;
(T) a heavy chain variable region as shown in amino acid sequence SEQ ID NO: 41, 45, 46, 47 or 48 or having at least 95% sequence identity to SEQ ID NO: 41, 45, 46, 47 or 48, and a light chain variable region as shown in amino acid sequence SEQ ID NO: 42, 43 or 44 or having at least 95% sequence identity to SEQ ID NO: 42, 43 or 44; and
(U) a heavy chain variable region as shown in amino acid sequence SEQ ID NO: 49, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65 or 66 or having at least 95% sequence identity to SEQ ID NO: 49, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65 or 66, and a light chain variable region as shown in amino acid sequence SEQ ID NO: 50, 51, 52, or 53 or having at least 95% sequence identity to SEQ ID NO: 50, 51, 52, or 53.
In some embodiments, the anti-CD73 antibody or the antigen-binding fragment thereof of the present disclosure comprises any one selected from the group consisting of V-X:
(V) a heavy chain variable region as shown in SEQ ID NO: 39 and a light chain variable region as shown in SEQ ID NO: 36;
(W) a heavy chain variable region as shown in SEQ ID NO: 41 and a light chain variable region as shown in SEQ ID NO: 43; and
(X) a heavy chain variable region as shown in SEQ ID NO: 61 and a light chain variable region as shown in SEQ ID NO: 52.
In some embodiments, the anti-CD73 antibody or the antigen-binding fragment thereof of the present disclosure comprises constant region(s).
In some embodiments, the antibody of the present disclosure is a chimeric antibody or a humanized antibody, the heavy chain constant region of which is derived from a human IgG1, IgG2, IgG3 or IgG4 or mutant sequence(s) of IgG1, IgG2, IgG3 or IgG4, and the light chain constant region is derived from human kappa, lambda chain or mutant sequence(s) thereof.
In some embodiments, the amino acid sequence of the heavy chain constant region of the antibody in the present disclosure is as shown in SEQ ID NO: 77 or has at least 85% sequence identity to SEQ ID NO: 77, and the amino acid sequence of the light chain constant region is as shown in SEQ ID No. 78 or has at least 85% sequence identity to SEQ ID NO: 78.
In some embodiments, the above-mentioned amino acid sequence having at least 85% sequence identity means an amino acid sequence having at least 86%, 87%, 88%, 89%, 90%, 91%, 92%, 93%, 94%, 95%, 96%, 97%, 98%, or 99% sequence identity.
In some embodiments, the above-mentioned amino acid sequence having at least 85% sequence identity includes those obtained by deletion, insertion or substitution mutation of one or more amino acid(s).
In some embodiments of the anti-CD73 antibody or the antigen-binding fragment thereof of the present disclosure, the antibody is any one selected from the group consisting of iv) to vi):
iv) an anti-CD73 antibody comprising a heavy chain as shown in SEQ ID NO: 79 or having at least 85% sequence identity to SEQ ID NO: 79 and a light chain as shown in SEQ ID NO: 80 or having at least 85% sequence identity to SEQ ID NO: 80;
v) an anti-CD73 antibody comprising a heavy chain as shown in SEQ ID NO: 81 or having at least 85% sequence identity to SEQ ID NO: 81 and a light chain as shown in SEQ ID NO: 82 or having at least 85% sequence identity to SEQ ID NO: 82; and
vi) an anti-CD73 antibody comprising a heavy chain as shown in SEQ ID NO: 83 or having at least 85% sequence identity to SEQ ID NO: 83 and a light chain as shown in SEQ ID NO: 84 or having at least 85% sequence identity to SEQ ID NO: 84.
In some embodiments of the present disclosure, the above-mentioned amino acid sequence having at least 85% sequence identity means an amino acid sequence having at least 86%, 87%, 88%, 89%, 90%, 91%, 92%, 93%, 94%, 95%, 96%, 97%, 98%, or 99% sequence identity.
In some specific embodiments, the above-mentioned amino acid sequence having at least 85% sequence identity includes those obtained by deletion, insertion or substitution mutation of one or more amino acid(s); in some specific embodiments, the above-mentioned amino acid sequence having at least 85% sequence identity is obtained by deletion, insertion or substitution mutation of one or more amino acid(s) in the framework(s) or constant region(s) of the antibody light or heavy chain amino acid sequence(s).
In some embodiments of the anti-CD73 antibody or the antigen-binding fragment thereof of the present disclosure, wherein the antigen-binding fragment is selected from the group consisting of Fab, Fab′, F(ab′)2, scFv, diabody, and dsFv.
In some embodiments, the present disclosure discloses an isolated monoclonal antibody or antigen-binding fragment thereof, which competitively with any of the antibodies or antigen-binding fragments thereof described above for the binding to human CD73, or binds to the same human CD73 epitope and/or monkey CD73 epitope as any of the antibodies or antigen-binding fragments thereof described above.
In some embodiments, the present disclosure discloses a nucleic acid molecule that encodes any one of the anti-CD73 antibodies or the antigen-binding fragments thereof described above.
In some embodiments, the present disclosure discloses a vector comprising the above-mentioned nucleic acid molecule.
In some embodiments, the present disclosure discloses a host cell, which is obtained by transforming the above-mentioned recombinant vector; the host cell is selected from the group consisting of prokaryotic cells and eukaryotic cells; in some embodiments, eukaryotic cells; in some embodiments, mammalian cells. The host cell does not include any human cell capable of developing into a complete individual, such as human embryonic stem cells, fertilized eggs, and germ cells.
In some embodiments, the present disclosure discloses a method for preparing any anti-CD73 antibody or the antigen-binding fragment thereof as described above, the method comprising:
a step of culturing the above-mentioned host cell in a suitable medium under conditions suitable for growth, recovering and purifying the anti-CD73 antibody or the antigen-binding fragment thereof from the medium.
In some embodiments, the present disclosure discloses a pharmaceutical composition, which comprises the anti-CD73 antibody or the antigen-binding fragment thereof or the nucleic acid molecule expressed by any one of the host cells described above, and one or more pharmaceutically acceptable carrier(s), excipient(s) or diluent(s).
In some embodiments, the pharmaceutical composition can contain 0.01 to 99% by weight of the anti-CD73 antibody or the antigen-binding fragment thereof in unit dose; in some embodiments, the pharmaceutical composition contains an amount of 0.1-2000 mg of the monoclonal antibody or the antigen binding fragment thereof in unit dose; in other embodiments, the pharmaceutical composition contains an amount of 1-1000 mg of the monoclonal antibody or the antigen binding fragment thereof in unit dose.
In some embodiments, the present disclosure discloses an in vitro method for detection of human CD73 in a sample to be tested, the method comprising: contacting the sample to be tested with any of the anti-CD73 antibodies or the antigen-binding fragments thereof, or the pharmaceutical composition described above; and
determining the presence or level of human CD73 in the sample to be tested.
In some embodiments, the present disclosure discloses use of any of the anti-CD73 antibodies or the antigen-binding fragments, nucleic acid molecules, or pharmaceutical composition described above in the preparation of a medicament for the treatment or prevention of a disease or disorder. In some embodiments, the disease or disorder described is a CD73-related disease or disorder.
In some embodiments, the CD73-related disease or disorder is a cell proliferative disease, and in some embodiments, the cell proliferative disease is a tumor.
In some embodiments, the tumor is selected from the group consisting of breast cancer, glioma, bladder cancer, colon cancer, melanoma, ovarian cancer, thyroid cancer, esophageal cancer, lung cancer, kidney cancer, pancreatic cancer, lymphoma, prostate cancer and gastric cancer. In some embodiments, the tumor is a metastatic tumor.
In some embodiments, the present disclosure discloses a method for the treatment or prevention of a CD73-related disease or disorder, the method comprising administering to a subject a therapeutically effective amount of any of the anti-CD73 antibodies or the antigen binding fragments thereof described above, a nucleic acid molecule encoding the same, or a pharmaceutical composition containing the same; in some embodiments, the disease is a cell proliferative disease; in some embodiments, the cell proliferative disease is a tumor; in some embodiments, the tumor is selected from the group consisting of breast cancer, glioma, bladder cancer, colon cancer, melanoma, ovarian cancer, thyroid cancer, esophageal cancer, lung cancer, kidney cancer, pancreatic cancer, lymphoma, prostate cancer and gastric cancer. In some embodiments, the tumor is a metastatic tumor.
In some embodiments, the present disclosure discloses an anti-CD73 antibody or antigen-binding fragment thereof, or a pharmaceutical composition comprising the same, or a nucleic acid molecule encoding the same for the treatment or prevention of a disease (such as a cell proliferative disease). The treatment or prevention includes administering to a subject a pharmaceutically effective amount of any of the anti-CD73 antibodies or the antigen-binding fragments thereof, or pharmaceutical compositions, or nucleic acid molecules as described above. In some embodiments, the cell proliferative disease is a tumor. In some embodiments, the tumor is selected from the group consisting of breast cancer, glioma, bladder cancer, colon cancer, melanoma, ovarian cancer, thyroid cancer, esophageal cancer, lung cancer, kidney cancer, pancreatic cancer, lymphoma, prostate cancer and gastric cancer. In some embodiments, the tumor is a metastatic tumor.
In some embodiments, the present disclosure discloses the above-mentioned anti-CD73 antibody or antigen-binding fragment thereof, the nucleic acid molecule encoding the same, or the pharmaceutical composition comprising the same for use as a medicament; preferably, the medicament can be used for treatment or prevention of a human CD73-related disease or disorder; more preferably, the medicament can be used for the treatment of a cell proliferative disease, preferably a tumor, more preferably breast cancer, glioma, bladder cancer, colon cancer, melanoma, ovarian cancer, thyroid cancer, esophageal cancer, lung cancer, kidney cancer, pancreatic cancer, lymphoma, prostate cancer or gastric cancer.
Although there have been reports about anti-CD73 antibodies in the relevant literatures, there is no commercially available CD73 antibody product for clinical use. The inventors of the present application have developed new anti-CD73 antibodies or antigen-binding fragment thereof with favorable biological activities after a large number of experiments.
In order to make the present disclosure be more easily understood, certain technical and scientific terms are specifically defined below. Unless otherwise defined explicitly herein, all other technical and scientific terms used herein have the meaning commonly understood by those skilled in the art to which this disclosure belongs.
Three-letter codes and one-letter codes for amino acids used in the present disclosure are as described in J. biol. chem, 243, p 3558(1968).
As used herein, “antibody” refers to immunoglobulin, a four-peptide chain structure formed by two identical heavy chains and two identical light chains connected together by interchain disulfide bond(s). Immunoglobulin heavy chain constant regions exhibit different amino acid compositions and sequences, hence present different antigenicity. Accordingly, immunoglobulins can be divided into five types, or named as immunoglobulin isotypes, namely IgM, IgD, IgG, IgA and IgE, corresponding to heavy chain μ, δ, γ, α and ε, respectively According to amino acid composition of hinge region and also the number and location of heavy chain disulfide bonds, the same type of Ig can further be divided into different sub-types, for example, IgG can be divided into IgG1, IgG2, IgG3 and IgG4. Light chain can be divided into κ or λ chain based on different constant regions. Each of the five types of Ig can have a kappa chain or a lambda chain.
In the present disclosure, the antibody light chain described in the present disclosure can further include a light chain constant region, and the light chain constant region includes human or murine kappa, lambda chain or variant(s) thereof.
In the present disclosure, the antibody heavy chain described in the present disclosure can further include a heavy chain constant region, and the heavy chain constant region includes human or murine IgG1, IgG2, IgG3, IgG4 or variant(s) thereof.
About 110 amino acid sequences adjacent to the N-terminus of the antibody heavy and light chains are highly variable, known as variable region (Fv region); the rest of amino acid sequences close to the C-terminus are relatively stable, known as constant region. The variable region includes 3 hypervariable regions (HVRs) and 4 framework regions (FRs) with relatively conservative sequences. The three hypervariable regions which determine the specificity of the antibody are also known as complementarity determining regions (CDRs). Each of the light chain variable region (LCVR) and heavy chain variable region (HCVR) consists of 3 CDR regions and 4 FR regions, with the sequential order from the amino terminus to carboxyl terminus of: FR1, CDR1, FR2, CDR2, FR3, CDR3, and FR4. The three CDR regions of the light chain refer to LCDR1, LCDR2, and LCDR3, and the three CDR regions of the heavy chain refer to HCDR1, HCDR2, and HCDR3. The number and position of the CDR amino acid residues of the LCVR region and the HCVR region of the antibody or antigen-binding fragment described in the present disclosure comply with the known Kabat numbering criteria (LCDR1-3, HCDR1-3).
The term “complementarity determining region”, “CDR” or “hypervariable region” refers to one of the six hypervariable regions present in the antibody variable domain that mainly contribute to antigen binding. Generally, there are three CDRs (HCDR1, HCDR2, HCDR3) in each heavy chain variable region, and three CDRs (LCDR1, LCDR2, LCDR3) in each light chain variable region. The amino acid sequence boundaries of CDRs can be determined by any of a variety of well-known schemes, including the “Kabat” numbering criteria (see Kabat et al. (1991), “Sequences of Proteins of Immunological Interest”, 5th edition, Public Health Service, National Institutes of Health, Bethesda, Md.), “Chothia” numbering criteria (see Al-Lazikani et al., (1997) JMB 273:927-948) and ImmunoGenTics (IMGT) numbering criteria (Lefranc M P, Immunologist, 7, 132-136 (1999); Lefranc, M P, etc., Dev. Comp. Immunol., 27, 55-77 (2003), and the like. For example, for the classical format, following the Kabat criteria, the CDR amino acid residues in the heavy chain variable domain (VH) are numbered as 31-35 (HCDR1), 50-65 (HCDR2) and 95-102 (HCDR3); the CDR amino acid residues in the light chain variable domain (VL) are numbered as 24-34 (LCDR1), 50-56 (LCDR2), and 89-97 (LCDR3). Following the Chothia criteria, the CDR amino acid residues in VH are numbered as 26-32 (HCDR1), 52-56 (HCDR2) and 95-102 (HCDR3); and the amino acid residues in VL are numbered as 26-32 (LCDR1), 50-52 (LCDR2) and 91-96 (LCDR3). By combining both Kabat and Chothia to define CDR, CDRs are composed of amino acid residues 26-35 (HCDR1), 50-65 (HCDR2) and 95-102 (HCDR3) in the human VH and amino acid residues 24-34 (LCDR1), 50-56 (LCDR2) and 89-97 (LCDR3) in the human VL. Following IMGT criteria, the CDR amino acid residues in VH are usually numbered as 26-35 (CDR1), 51-57 (CDR2) and 93-102 (CDR3), and the CDR amino acid residues in VL are usually numbered as 27-32 (CDR1), 50-52 (CDR2) and 89-97 (CDR3). Following IMGT criteria, the CDR regions of an antibody can be determined by using IMGT/DomainGap Align Program.
The antibodies of the present disclosure include murine antibodies, chimeric antibodies, and humanized antibodies, preferably humanized antibodies.
As used herein, the term “murine antibody” refers to anti-human PD-L1 monoclonal antibodies prepared according to the knowledge and skills in the art. During the preparation, test subject is injected with CD73 antigen, and then a hybridoma expressing the antibody which possesses desired sequence or functional characteristics is isolated. In a preferable embodiment of the present disclosure, the murine CD73 antibody or antigen binding fragment thereof further comprises a light chain constant region of murine κ, λ chain or variant(s) thereof, or further comprises a heavy chain constant region of murine IgG1, IgG2, IgG3, IgG4 or variant(s) thereof.
The term “chimeric antibody” is an antibody formed by fusing antibody variable region(s) of a species (such as murine) to antibody constant region(s) of another species (such as human), and the chimeric antibody can alleviate the murine antibody-induced immune response. To establish a chimeric antibody, a hybridoma secreting specific murine monoclonal antibody is established firstly and a variable region gene is cloned from the murine hybridoma; then a constant region gene is cloned from human antibody according to the need; The murine variable region gene is connected to the human constant region gene to form a chimeric gene, which can be subsequently inserted into an expression vector. Finally, the chimeric antibody molecule will be expressed in eukaryotic or prokaryotic system. In a preferable embodiment of the present disclosure, the antibody light chain of the CD73 chimeric antibody further comprises a light chain constant region of a human kappa, lambda chain or variant(s) thereof. The antibody heavy chain of the CD73 chimeric antibody further comprises a heavy chain constant region of human IgG1, IgG2, IgG3, IgG4 or variant(s) of IgG1, IgG2, IgG3, IgG4; preferably comprises a heavy chain constant region of human IgG1, IgG2 or IgG4, or variant(s) of IgG1, IgG2 or IgG4 with amino acid mutation(s) (such as YTE or S228P, etc.).
The term “humanized antibody”, including CDR-grafted antibody, refers to an antibody generated by grafting murine CDR sequences into human antibody variable region frameworks, i.e., an antibody produced in different types of human germline antibody framework sequences. Humanized antibody can avoid heterologous responses induced by chimeric antibody which carries a large number of murine protein components. Such framework sequences can be obtained from public DNA database covering germline antibody gene sequences or published references. For example, germline DNA sequences of human heavy and light chain variable region genes can be found in “VBase” human germline sequence database (available on www.mrccpe.com.ac.uk/vbase), as well as in Kabat, E A, et al. 1991 Sequences of Proteins of Immunological Interest, 5th Ed. To avoid a decrease in activity caused by the decreased immunogenicity, the framework sequences in human antibody variable region can be subjected to minimal reverse mutation(s) or back mutation(s) to maintain the activity. The humanized antibody of the present disclosure also refers to humanized antibody on which CDR affinity maturation is performed by phage display. To avoid a decrease in activity caused by the decreased immunogenicity, the human antibody variable region can be subjected to minimal reverse mutation(s) (back mutation(s), which means that the amino acid residue(s) on the FR region derived from the human antibody is/are mutated into the amino acid residue(s) of the original source antibody on the corresponding positions) to maintain the activity.
The grafting of CDR can result in the decrease of the affinity of CD73 antibody or antigen binding fragment thereof to the antigen, due to the framework residues contacted with the antigen. Such interactions may be resulted from highly somatic mutations. Therefore, it may still be necessary to graft the donor framework amino acids onto the humanized antibody framework. The amino acid residues involved in antigen binding derived from non-human CD73 antibody or antigen binding fragment thereof can be identified by checking the sequence and structure of murine monoclonal antibody variable region. The amino acid residues which are different between the donor CDR framework and the germ lines may be considered to be related. If it is not possible to determine the most closely related germ line, the sequence may be aligned to the common sequence shared by subtypes or aligned to the common sequence of murine sequences sharing high similarity percentage. Rare framework residues are thought to be the result of a high mutation in somatic cells, and play an important role in binding.
The term “amino acid mutation” refers to the amino acid change or mutation in a protein or polypeptide variant when compared to the original protein or polypeptide, including one or more amino acid insertions, deletions or substitutions on the basis of the original protein or polypeptide. For example, “a variant with no more than 3 amino acid mutation(s)” refer to insertion, deletion or substitution of 3, 2, 1, or 0 amino acid(s), when compared with the original protein or polypeptide.
The term “antigen-binding fragment” or “functional fragment” of an antibody refers to one or more fragments of the antibody that retain the ability to specifically bind to an antigen (e.g., CD73). It has been shown that fragments of a full-length antibody can be used to achieve function of binding to a specific antigen. Examples of the binding fragments contained in the term “antigen-binding fragment” of an antibody include (i) Fab fragment, a monovalent fragment composed of VL, VH, CL and CH1 domains; (ii) F(ab′)2 fragment, a bivalent fragment formed by two Fab fragments connected by disulfide bridge(s) in the hinge region, (iii) Fv fragment composed of the VH and VL domains from one arm of the antibody; (iv) single domain or dAb fragment (Ward et al., (1989) Nature 341: 544-546), composed of VH domain(s); (v) dsFv, a stable antigen-binding fragment formed by VH and VL via interchain disulfide bond(s); and (vi) diabody, bispecific antibody and multispecific antibody containing fragments such as scFv, dsFv, and Fab. In addition, though the VL domain and VH domain of the Fv fragment are encoded by two separate genes, they can be linked by a synthetic linker by using recombinant methods, to generate a single protein chain in which a monovalent molecular is formed by pairing the VL and VH domain (referred to as single chain Fv (scFv); see, e.g., Bird et al. (1988) Science 242:423-426; and Huston et al (1988) Proc. Natl. Acad. Sci USA 85:5879-5883). Such single chain antibodies are also intended to be included in the term of “antigen binding fragment” of an antibody. Such antibodies are obtained using conventional techniques known in the field, and are screened for functional fragments by using the same method as that for an intact antibody. Antigen binding portions can be produced by recombinant DNA technology or by enzymatic or chemical disruption of an intact immunoglobulin. Antibodies can be in the form of different isotypes, e.g., IgG (e.g., IgG1, IgG2, IgG3 or IgG4 subtype), IgA1, IgA2, IgD, IgE or IgM antibody.
The antigen-binding fragments of the present disclosure include Fab, F(ab′)2, Fab′, single-chain antibody (scFv), dimerized V region (diabody), disulfide stabilized V region (dsFv) and so on.
Fab is an antibody fragment obtained by treating an IgG antibody molecule with a papain (which cleaves the amino acid residue at position 224 of the H chain). The resulting fragment has a molecular weight of about 50,000 and has antigen binding activity, in which about a half of the N-terminal side of H chain and the entire L chain are bound together through a disulfide bond.
The Fab of the present disclosure can be produced by treating the monoclonal antibody of the present invention (which specifically recognizes human CD73 and binds to the extracellular region amino acid sequences or the three-dimensional structure thereof) with papain. Further, the Fab can be produced by inserting DNA encoding Fab of the antibody into a prokaryotic expression vector or eukaryotic expression vector and introducing the vector into a prokaryote or eukaryote to express the Fab.
“F(ab′)2” refers to an antibody fragment with a molecular weight of about 100,000 and antigen-binding activity, obtained by digesting the downstream part of the two disulfide bonds in the hinge region of IgG by pepsin. F(ab′)2 contains two Fabs connected at the hinge region.
The F(ab′) 2 of the present disclosure can be produced by treating the monoclonal antibody of the present invention (which specifically recognizes human CD73 and binds to the extracellular region amino acid sequences or the three-dimensional structure thereof) with papain. Also, F(ab′)2 can be produced by binding the Fab′ described below via thioether bond or disulfide bond.
Fab′ is an antibody fragment having a molecular weight of about 50,000 and having antigen binding activity, which is obtained by cleaving a disulfide bond at the hinge region of the above-mentioned F(ab′)2. The Fab′ of the present disclosure can be produced by treating the F(ab′)2 of the present disclosure which specifically recognizes CD73 and binds to the extracellular region amino acid sequences or the three-dimensional structure thereof with a reducing agent, such as dithiothreitol.
Further, the Fab′ can be produced by inserting DNA encoding Fab′ of the antibody into a prokaryotic expression vector or eukaryotic expression vector and introducing the vector into a prokaryote or eukaryote to express the Fab′.
The term “single chain antibody”, “single chain Fv” or “scFv” refers to a molecule comprising antibody heavy chain variable domain (or region; VH) connected to antibody light chain variable domain (or region; VL) by a linker. Such scFv molecules have general structure of NH2-VL-linker-VH—COOH or NH2—VH-linker-VL-COOH. A suitable linker in the prior art consists of repeated GGGGS amino acid sequence or variant(s) thereof, for example, variant with 1-4 repeats (Holliger et al. (1993), Proc. Natl. Acad. Sci. USA 90: 6444-6448). Other linkers that can be used in the present disclosure are described by Alfthan et al. (1995), Protein Eng. 8:725-731, Choi et al. (2001), Eur. J. Immunol. 31:94-106, Hu et al. (1996), Cancer Res. 56:3055-3061, Kipriyanov et al. (1999), J. Mol. Biol. 293:41-56 and Roovers et al. (2001), Cancer Immunol.
The scFv of the present disclosure can be produced by the following steps: obtaining cDNAs encoding VH and VL of the monoclonal antibody of the present disclosure which specifically recognizes human CD73 and binds to the extracellular region or three-dimensional structure thereof, constructing DNA encoding scFv, inserting the DNA into a prokaryotic expression vector or eukaryotic expression vector, and then introducing the expression vector into a prokaryote or eukaryote to express the scFv.
Diabody is an antibody fragment wherein the scFv is dimerized, and it is an antibody fragment having divalent antigen binding activity. In the divalent antigen binding activity, the two antigens can be the same or different.
The diabody of the present disclosure can be produced by the following steps: obtaining cDNAs encoding VH and VL of the monoclonal antibody of the present disclosure which specifically recognizes human CD73 and binds to the extracellular region or three-dimensional structure thereof, constructing DNA encoding scFv so that the length of the linker peptide is 8 or less amino acid residues, inserting the DNA into a prokaryotic expression vector or eukaryotic expression vector, and then introducing the expression vector into a prokaryote or eukaryote to express the diabody.
dsFv is obtained by substituting one amino acid residue in each of VH and VL with a cysteine residue, and then connecting the substituted polypeptides via a disulfide bond between the two cysteine residues. The amino acid residues to be substituted with a cysteine residue can be selected based on three-dimensional structure prediction of the antibody in accordance with known methods (Protein Engineering, 7, 697 (1994)).
The dsFv of the present disclosure can be produced by the following steps: obtaining cDNAs encoding VH and VL of the monoclonal antibody of the present disclosure which specifically recognizes human CD73 and binds to the extracellular region or three-dimensional structure thereof, constructing DNA encoding dsFv, inserting the DNA into a prokaryotic expression vector or eukaryotic expression vector, and then introducing the expression vector into a prokaryote or eukaryote to express the dsFv.
The CDR-containing peptide of the present disclosure can be produced by the following steps: constructing DNAs encoding VH and VL of the monoclonal antibody of the present disclosure which specifically recognizes human CD73 and binds to the extracellular region amino acid sequences or the three-dimensional structure thereof, inserting the DNA into a prokaryotic expression vector or eukaryotic expression vector, and then introducing the expression vector into a prokaryote or eukaryote to express the peptide. The CDR-containing peptide can also be produced by a chemical synthesis method such as Fmoc method or tBoc method.
As used herein, the term “antibody framework (FR)” refers to a part of the variable domain, either VL or VH, which serves as a scaffold for the antigen binding loops (CDRs) of this variable domain. Essentially, FR is a variable domain without CDRs.
The term “epitope” or “antigenic determinant” refers to a site on an antigen to which an immunoglobulin or antibody specifically binds (e.g., a specific site on CD73 molecule). Epitopes typically include at least 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14 or 15 successive or non-successive amino acids in a unique spatial conformation. See, for example, Epitope Mapping Protocols in Methods in Molecular Biology, Vol. 66, G. E. Morris, Ed. (1996).
The term “specifically bind to”, “selectively bind to”, “selectively binds to” or “specifically binds to” refers to the binding of an antibody to a predetermined epitope on an antigen. Typically, the antibody binds with an affinity (KD) of less than about 10−7M, for example, less than about 10−8 M, 10−9 M, 10−10 M or 10−11 M or even less.
The term “KD” or “Kd” refers to the dissociation equilibrium constant for particular antibody-antigen interaction. Typically, the antibody of the present disclosure binds to human CD73 with a dissociation equilibrium constant (KD) of less than about 10−7M, for example, less than about 10−8M, 10−9M or 10−10 M or even less, for example, as determined by Surface Plasma Resonance (SPR) technology in Biacore instrument.
When the term “competition” is used in the context of antigen binding proteins (e.g., neutralizing antigen binding proteins or neutralizing antibodies) that compete for the same epitope, it means that competition occurs between the antigen binding proteins, which is determined by the assays wherein an antigen binding protein to be tested (e.g., an antibody or immunologically functional fragment thereof) prevents or inhibits (e.g., reduces) the specific binding of a reference antigen binding protein (e.g., a ligand or reference antibody) to a common antigen (e.g., a CD73 antigen or fragment thereof). Numerous types of competitive binding assays are available to determine whether an antigen binding protein competes with another. These assays are, for example, solid phase direct or indirect radioimmunoassay (RIA), solid phase direct or indirect enzyme immunoassay (EIA), Sandwich competition assay (see, e.g., Stahli et al, 1983, Methods in Enzymology 9: 242-253); solid phase direct biotin-avidin EIA (see, e.g., Kirkland et al, 1986, J. Immunol. 137: 3614-3619; Cheung, et al, 1990, Virology 176: 546-552), solid phase direct labeling assay, solid phase direct labeling sandwich assay (see, e.g., Harlow and Lane, 1988, Antibodies, A Laboratory Manual, Cold Spring Harbor Press); solid phase direct labeling RIA with I-125 label (see, e.g., Morel et al, 1988, Molec. Immunol. 25: 7-15); solid phase direct biotin-avidin EIA (see, e.g., Cheung, et al, 1990, Virology 176: 546-552); and direct labeling RIA (Moldenhauer et al, 1990, Scand. J. Immunol. 32: 77-82). Typically, the assay involves the use of a purified antigen capable of binding to both an unlabeled test antigen binding protein and a labeled reference antigen binding protein (the antigen is on a solid surface or cell surface). Competitive inhibition is determined by measuring the amount of label bound to the solid surface or to the cell surface in the presence of the test antigen binding protein. Usually, the test antigen binding protein is present in excess. Antigen binding proteins identified by competitive assay (competing with the antigen binding protein) include: antigen binding proteins that bind to the same epitope as the reference antigen binding protein; and antigen binding proteins that bind to an epitope that is sufficiently close to the epitope to which the reference antigen binding protein binds, wherein the two epitopes spatially interfere with each other to hinder the binding. Additional details regarding methods for determining competitive binding are provided in the Examples herein. Typically, when a competitive antigen binding protein is present in excess, it will inhibit (e.g., reduce) at least 40-45%, 45-50%, 50-55%, 55-60%, 60-65%, 65-70%, 70-75% or even more of the specific binding of the reference antigen binding protein to the common antigen. In some cases, the binding is inhibited by at least 80-85%, 85-90%, 90-95%, 95-97% or even more.
As used herein, the term “nucleic acid molecule” refers to DNA molecules and RNA molecules. The nucleic acid molecule can be single-stranded or double-stranded, but preferably is double-stranded DNA. A nucleic acid is “operably linked” when it is placed into a functional relationship with another nucleic acid sequence. For instance, a promoter or enhancer is considered to be operably linked to a coding sequence, if it affects the transcription of the coding sequence.
The term “vector” refers to a nucleic acid molecule capable of transporting another nucleic acid to which it has been linked. In one embodiment, the vector is a “plasmid,” which refers to a circular double stranded DNA loop into which additional DNA segments may be ligated. In another embodiment, the vector is a viral vector, wherein additional DNA segments may be ligated into the viral genome. The vectors disclosed herein are capable of self-replicating in the host cell into which they are introduced (e.g., bacterial vectors having a bacterial replication origin and episomal mammalian vectors), or may be integrated into the genome of a host cell upon introduction into the host cell, and thereby are replicated along with the host genome (e.g., non-episomal mammalian vectors).
Methods for producing and purifying antibodies and antigen-binding fragments are well known in the art, for example, Antibodies: A Laboratory Manual, Cold Spring Harbor, chapters 5-8 and 15. For example, mice can be immunized with human CD73 or fragment thereof, and the resulting antibodies can then be renatured, purified, and sequenced for amino acid sequences by using conventional methods well known in the art. Antigen-binding fragments can also be prepared by conventional methods. The antibodies or the antigen binding fragments of the present disclosure are engineered to incorporate one or more human framework regions onto the CDR regions derived from non-human antibody. Human FR germline sequences can be obtained from ImMunoGeneTics (IMGT) via their website http://imgt.cines.fr, or from The Immunoglobulin Facts, 2001, ISBN012441351, by aligning against IMGT human antibody variable germline gene database using MOE software.
The term “host cell” refers to a cell into which an expression vector has been introduced. Host cells can include bacterial, microbial, plant or animal cells. Bacteria that are susceptible to be transformed include members of enterobacteriaceae, such as Escherichia coli or Salmonella strains; Bacillaceae such as Bacillus subtilis; Pneumococcus; Streptococcus and Haemophilus influenzae. Suitable microorganisms include Saccharomyces cerevisiae and Pichia pastoris. Suitable animal host cell lines include CHO (Chinese Hamster Ovary Cell Line) and NS0 cells.
The engineered antibodies or antigen binding fragments of the present disclosure can be prepared and purified using known methods. For example, cDNA sequences encoding a heavy chain and a light chain can be cloned and engineered into a GS expression vector. The vectors expressing recombinant immunoglobulin may then be stably transfected into CHO cells. As a more recommended prior art, mammalian expression systems can lead to glycosylation of antibodies, especially in the highly conserved N-terminal sites of the Fc region. Stable clones were obtained by expressing an antibody specifically binding to human CD73. Positive clones may be expanded in serum-free culture medium in bioreactors for antibody production. Culture medium, into which an antibody has been secreted, may be purified by conventional techniques. For example, purification may be performed on Protein A or G Sepharose FF column that has been modified with buffer. The nonspecific binding components are washed out. The bound antibody is eluted by pH gradient and antibody fragments are detected by SDS-PAGE, and then pooled. The antibodies may be filtered and concentrated using common techniques. Soluble mixtures and aggregates may be effectively removed by common techniques, such as size exclusion or ion exchange. The resulting product is then immediately frozen, for example at −70° C., or may be lyophilized.
“Administration” and “treatment,” as it applies to an animal, human, experimental subject, cell, tissue, organ, or biological fluid, refers to contacting an exogenous pharmaceutical, therapeutic, diagnostic agent, or composition with the animal, human, subject, cell, tissue, organ, or biological fluid. “Administration” and “treatment” can refer, e.g., to therapeutic, pharmacokinetic, diagnostic, research, and experimental methods. Treatment of a cell involves contacting a reagent with a cell, as well as contacting a reagent with a fluid, where the fluid is in contact with the cell. “Administration” and “treatment” also means in vitro or ex vivo treatments, e.g., of a cell, with a reagent, diagnostic, binding composition, or with another cell. “Treatment”, as it applies to a human, veterinary, or research subject, refers to therapeutic treatment, prophylactic or preventative measures, research and diagnostic applications.
As used herein, “treat” means to administer a therapeutic agent, such as a composition containing any of binding compounds of the present disclosure, internally or externally to a patient having one or more disease symptoms for which the agent has known therapeutic activity. Typically, the agent is administered in an amount effectively to alleviate one or more disease symptoms in the patient or population to be treated, by inducing the regression of or inhibiting the progression of such symptom(s) by any clinically measurable degree. The amount of a therapeutic agent that is effective to alleviate any particular disease symptom (also referred to as the “therapeutically effective amount”) may vary according to various factors such as the disease state, age, and body weight of the patient, and the ability of the drug to elicit a desired response in the patient. Whether a disease symptom has been alleviated can be assessed by any clinical measurement typically used by physicians or other skilled healthcare providers to assess the severity or progression status of that symptom. While an embodiment of the present disclosure (e.g., a treatment method or article of manufacture) may not be effective in alleviating the target disease symptom(s) in every subject, it should alleviate the target disease symptom(s) in a statistically significant number of subjects as determined by any statistical test known in the art such as Student's t-test, chi-square test, U-test according to Mann and Whitney, Kruskal-Wallis test (H-test), Jonckheere-Terpstra-test and Wilcoxon-test.
“Conservative modification” or “conservative substitution or replacement” refers to substitutions of amino acids in a protein with other amino acids having similar characteristics (e.g. charge, side-chain size, hydrophobicity/hydrophilicity, backbone conformation and rigidity, etc.), such that the changes can frequently be made without altering the biological activity of the protein. Those skilled in the art recognize that, in general, single amino acid substitution in non-essential regions of a polypeptide does not substantially alter biological activity (see, e.g., Watson et al. (1987) Molecular Biology of the Gene, The Benjamin/Cummings Pub. Co., p. 224 (4th Ed.)). In addition, substitutions with structurally or functionally similar amino acids are less likely to disrupt biological activity. Exemplary conservative substitutions are set forth in the table below.
“Effective amount” encompasses an amount sufficient to ameliorate or prevent a symptom or sign of the medical condition. Effective amount also means an amount sufficient to allow or facilitate diagnosis. An effective amount for a particular patient or veterinary subject may vary depending on factors such as the condition being treated, the overall health condition of the patient, the route and dose of administration and the severity of side effects. An effective amount can be the maximal dose or dosing protocol that avoids significant side effects or toxic effects.
“Exogenous” refers to substances produced outside organisms, cells, or humans according to circumstances. “Endogenous” refers to substances produced in cells, organisms, or human bodies according to circumstances.
The “mutated sequence” mentioned in the present disclosure refers to the nucleotide sequence or amino acid sequence having various percentage sequence identity to those of the present disclosure, after modifying the nucleotide sequence and amino acid sequence of the present disclosure by appropriate substitution, insertion or deletion. The sequence identity described in the present disclosure can be at least 85%, 90% or 95%, non-limiting examples include 85%, 86%, 87%, 88%, 89%, 90%, 91%, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99%, 100%.
“Homology”, “identity”, and “consistency” are interchangeable herein and refer to the sequence similarity between two polynucleotide sequences or between two polypeptide sequences. When a position in both of the two sequences to be compared is occupied by the same base or amino acid monomer subunit, e.g., if a position in each of two DNA molecules is occupied by the same base, then the molecules are deemed to be homologous at that position. The percent of homology between two sequences is a function of the number of matching or homologous positions shared by the two sequences divided by the number of all positions to be compared, and then multiplied by 100. For example, when two sequences are optimally aligned, if 6 out of 10 positions in the two sequences are matched or homologous, then the two sequences are 60% homologous; if 95 out of 100 positions in the two sequences are matched or homologous, then the two sequences are 95% homologous. Generally, the comparison is performed when two sequences are aligned to give maximum percent homology. In some specific embodiments of the present disclosure, the antibody sequence has at least 85% sequence identity; in other specific embodiments, at least 86%, 87%, 88%, 89%, 90%, 91%, 92%, 93%, 94%, 95%, 96%, 97%, 98%, or 99% sequence identity; in other specific embodiments, 90%, 95%, or 99% or more sequence identity; in other specific embodiments, at least 95% sequence identity. The above-mentioned amino acid sequence having particular sequence identity can be obtained from deletion, insertion or substitution of one or more amino acid(s).
As used herein, the expressions “cell,” “cell line,” and “cell culture” are used interchangeably and all such designations include progeny thereof. Thus, the words “transformant” and “transformed cell” include the primary subject cells and cultures derived therefrom, regardless of the number of passages. It should be also understood that all progeny may not be precisely identical in DNA content, due to intended or unintended mutation. Mutant progeny thus screened that has the same function or biological activity as that of the originally transformed cells are included in the scope of this term. Where distinct designations are intended to, it will be clearly understood from the context.
As used herein, “polymerase chain reaction” or “PCR” refers to a procedure or technique in which minute amounts of a specific portion of nucleic acid, RNA and/or DNA, are amplified as described in, e.g., U.S. Pat. No. 4,683,195. Generally, sequence information at the ends of or beyond the region of interest is available, such that oligonucleotide primers can be designed; these primers will be identical or similar in sequence to opposite strands of the template to be amplified. The 5′ terminal nucleotides of the two primers are identical to the ends of the material to be amplified. PCR can be used to amplify specific RNA sequences, specific DNA sequences from total genomic and cDNA transcribed from total cellular RNA, bacteriophage or plasmid sequences, etc. See generally Mullis et al. (1987) Cold Spring Harbor Symp. Ouant. Biol. 51:263; Erlich ed., (1989) PCR TECHNOLOGY (Stockton Press, NY). The PCR used in the present disclosure is considered to be one, but not the only, example of polymerase reaction method for amplifying a test nucleic acid sample. The method comprises the use of known nucleic acid sequences served as primers together with nucleic acid polymerase to amplify or generate a specific portion of nucleic acid.
“Optional” or “optionally” means that the event or circumstance that follows can occur, but does not necessarily occur, and the description includes the instances in which the event or circumstance does or does not occur. For example, “optionally contains 1-3 antibody heavy chain variable regions” means the antibody heavy chain variable region with specific sequence can, but not necessarily, be present.
“Pharmaceutical composition” refers to a mixture containing one or more antibodies or the antigen binding fragments thereof according to the present disclosure and other chemical components, such as physiologically/pharmaceutically acceptable carrier(s) and excipient(s). The pharmaceutical composition aims at promoting the administration to an organism, facilitating the absorption of the active ingredient and thereby exerting a biological effect.
As used herein, “prevention” includes delaying the development of disease-related symptom(s) and/or reducing the severity of these symptoms that the disease will develop or is expected to develop. The term also includes alleviating the existing symptom(s), preventing additional symptom(s), and alleviating or preventing the factors underlying these symptoms. Therefore, the term means that a beneficial result has been conferred to a vertebrate subject suffering from a disease.
In addition, the present disclosure includes an agent for treating a CD73-related disease, the agent comprising the monoclonal antibody or the antibody fragment thereof of the present disclosure as an active ingredient.
The CD73-related diseases are not to be limited, as long as the disease is related to CD73 (e.g., a disease caused by CD73-expressing cells, or caused by abnormal expression of CD73), for example, a cell proliferative disease that can be suppressed by the molecule of the present disclosure binding to human CD73. In some embodiments, the cell proliferative disease is a tumor. In some embodiments, the tumor is breast cancer, glioma, bladder cancer, colon cancer, melanoma, ovarian cancer, thyroid cancer, esophageal cancer, lung cancer, kidney cancer, pancreatic cancer, lymphoma, prostate cancer, or gastric cancer. In some embodiments, the tumor is a metastatic tumor.
In addition, the present disclosure relates to methods for immunodetection or determination of CD73, reagents for immunodetection or determination of CD73, methods for immunodetection or determination of CD73-expressing cells, and the diagnostic agents for diagnosing diseases associated with CD73, comprising the antibody or the antibody fragment of the present disclosure that specifically recognizes human CD73 as an active ingredient.
In the present disclosure, the method for detecting or measuring the amount of CD73 may be any known method. For example, immunoassay or immunodetection method.
The immunoassay or immunodetection method is a method of detecting or measuring the amount of an antibody or antigen, by using a labeled antigen or antibody. Examples of immunoassay or immunodetection methods include radioactive substance-labeled immuno-antibody method (RIA), enzyme immunoassay (EIA or ELISA), fluorescence immunoassay (FIA), luminescence immunoassay, western blotting, physicochemical method, and the like.
The above-mentioned CD73-related diseases can be diagnosed by detecting or measuring CD73-expressing cells using the antibodies or antibody fragments of the present disclosure.
Cells expressing the polypeptide can be detected by the known immunodetection methods, e.g. by immunoprecipitation, fluorescent cell staining, immunotissue staining, and the like. In addition, the method such as fluorescent antibody staining method with the FMAT8100HTS system (Applied Biosystem) can be used.
In the present disclosure, samples to be detected or measured for CD73 are not particularly limited, as long as they are possible to contain CD73-expressing cells, such as tissue cells, blood, plasma, serum, pancreatic juice, urine, stool, tissue fluid or culture medium.
Dependent on the required diagnostic method, the diagnostic agent comprising the antibody or the antibody fragment thereof of the present disclosure can also comprise reagents for performing an antigen-antibody reaction or reagents for detecting the reaction. The reagents for performing an antigen-antibody reaction include buffers, salts and the like. The reagents for detection include agents commonly used in immunoassay or immunodetection methods, for example, a labeled secondary antibody that recognizes the monoclonal antibody, the antibody fragment or the conjugate thereof, and a substrate corresponding to the label.
The anti-CD73 antibodies or the antigen-binding fragments provided in the examples of the present disclosure are specific to CD73 and have high affinity with human CD73, wherein the humanized anti-CD73 antibodies or the antigen-binding fragments exhibit a greatly reduced immunogenicity and completely maintain the specificity of the murine antibodies, have higher affinity and excellent in vivo and in vitro activity.
The anti-CD73 antibodies or antigen-binding fragments provided in the examples of the present disclosure have favorable metabolic kinetic characteristics and bioavailability.
The following examples are provided to further describe the present disclosure, but are not intended to limit the scope of the disclosure. Experimental methods for which the specific conditions are not indicated in the examples of the present disclosure are generally carried out according to conventional conditions, such as Sambrook et al., Antibodies: Laboratory Manual, Molecular Cloning, Cold Spring Harbor; or according to the conditions recommended by the manufacturers of materials or products. Reagents for which the sources are not specifically indicated are commercially available reagents.
I. Design and Expression of Antigen
Human CD73 protein (Uniprot number: P21589) was used as the template of CD73 of the present disclosure to design the amino acid sequence of the antigen and detection protein involved in the present disclosure. Optionally, the CD73 protein was fused with various tags, and separately cloned into pTT5 vector or pTarget vector, and transiently expressed in 293 cells or stably expressed in CHO cells to result in the antigens and detection proteins of the present disclosure. The following CD73 antigens refer to human CD73, unless specifically indicated.
Full-length sequence of human CD73 can be used to construct CD73 over-expressing cell lines for immunization and detection, the specific sequence of which is as shown in SEQ ID NO:1:
MCPRAARAPATLLLALGAVLWPAAGA
WELTILHTNDVHSRLEQTSEDSSK
CVNASRCMGGVARLFTKVQQIRRAEPNVLLLDAGDQYQGTIWFTVYKGAE
VAHFMNALRYDAMALGNHEFDNGVEGLIEPLLKEAKEPILSANIKAKGPL
ASQISGLYLPYKVLPVGDEVVGIVGYTSKETPFLSNPGTNLVFEDEITAL
QPEVDKLKTLNVNKIIALGHSGFEAIDKLIAQKVRGVDVVVGGHSNTFLY
TGNPPSKEVPAGKYPFIVTSDDGRKVPVVQAYAFGKYLGYLKIEFDERGN
VISSHGNPILLNSSIPEDPSIKADINKWRIKLDNYSTQELGKTIVYLDGS
SQSCRFRECIVMGNLICDAMINNNLRHTDEAIFWNHVSMCILNGGGIRSP
IDERNNGTITWENLAAVLPFGGTFDLVQLKGSTLKKAFEHSVHRYGQSTG
EFLQVGGIHVVYDLSRKPGDRVVKLDVLCTKCRVPSYDPLKAIDEVYKVI
LPNFLANGGDGFQMIKDELLRHDSGDQDINVVSTYISKAIKVIYPAVEGR
IK
FSTGSHCHGSFSLIFLSLWAVIFVLYQ
(Note: The single underlined portion represents signal peptide, the italic represents the extracellular region of human CD73, and the double underlined portion represents propeptide.)
CD73-3Flag (a fusion protein of the CD73 mature protein extracellular domain and three Flag tags) can be used for immunization, the specific sequence of which is as shown in SEQ ID NO: 2:
MEFGLSWLFLVAILKGVQC
WELTILHTNDVHSRLEQTSEDSSKCVNASRC
MGGVARLFTKVQQIRRAEPNVLLLDAGDQYQGTIWFTVYKGAEVAHFMNA
LRYDAMALGNHEFDNGVEGLIEPLLKEAKEPILSANIKAKGPLASQISGL
YLPYKVLPVGDEVVGIVGYTSKETPFLSNPGTNLVFEDEITALQPEVDKL
KTLNVNKIIALGHSGFEAIDKLIAQKVRGVDVVVGGHSNTFLYTGNPPSK
EVPAGKYPFIVTSDDGRKVPVVQAYAFGKYLGYLKIEFDERGNVISSHGN
PILLNSSIPEDPSIKADINKWRIKLDNYSTQELGKTIVYLDGSSQSCRFR
ECNMGNLICDAMINNNLRHTDEMFWNHVSMCILNGGGIRSPIDERNNGTI
TWENLAAVLPFGGTFDLVQLKGSTLKKAFEHSVHRYGQSTGEFLQVGGIH
VVYDLSRKPGDRVVKLDVLCTKCRVPSYDPLKMDEVYKVILPNFLANGGD
GFQMIKDELLRHDSGDQDINVVSTYISKMKVIYPAVEGRIK
DYKDHDGDY
KDHDIDYKDDDDK
(Note: The single underlined portion represents signal peptide, the italic represents the extracellular region of human CD73, and the double underlined portion represents the three Flag tags)
CD73-Myc-His (a fusion protein of the CD73 mature protein extracellular domain and Myc tag and His tag) can be used for detection, the specific sequence of which is as shown in SEQ ID NO: 3:
MEFGLSWLFLVAILKGVQCWELTILHTNDVHSRLEQTSEDSSKCVNASRC
HHHHHH
(Note: The single underlined portion represents signal peptide, the italic represents the extracellular region of human CD73, and the double underlined portion represents Myc-His tag.)
In addition, the cynomolgus monkey CD73/NT5E protein (His tag) was purchased from Sino Biological (Cat. No. 90192-C08H-50).
II. Purification of CD73-Related Recombinant Proteins, and Purification of Anti-Human CD73 Hybridoma Antibodies and Recombinant Antibodies
1. Separation and Purification of Hybridoma Supernatant by Protein G Affinity Chromatography
Purification of mouse hybridoma supernatant was preferably performed with ProteinG affinity chromatography. The cultured hybridoma was centrifuged and the supernatant was taken; based on the volume of the supernatant, 10-15% (by volume) of 1M Tris-HCl (pH 8.0-8.5) was added into the supernatant to adjust the pH to neutral. Protein G column was washed with 3-5× column volume of 6M guanidine hydrochloride, and then washed with 3-5× column volume of pure water; the column was equilibrated with 3-5× column volume of equilibrium buffer such as 1×PBS (pH7.4) buffer system; the cell supernatant was loaded at a low flow rate for binding, and the flow rate was controlled so that the retention time was about 1 min or longer; the column was washed with 3-5× column volume of 1×PBS (pH 7.4) until the UV absorption dropped to the baseline; The samples were eluted with 0.1M acetic acid/sodium acetate (pH3.0) buffer, the elution peaks were pooled according to UV detection. The eluted product was preserved for later use, after the pH was adjusted to 5-6 with 1M Tris-HCl (pH8.0). The eluted product can be subjected to solution replacement according to methods well-known to those skilled in the art, for example, replacing the solution with a desired buffer system by ultrafiltration-concentration using an ultrafiltration tube, or replacing the solution with a desired buffer system by using molecular exclusion such as G-25 de-salting column, or removing the aggregation components from the eluted product to improve the purity of the sample by using high-resolution molecular exclusion column (such as Superdex 200).
2. Purification of Antibodies with Protein A Affinity Chromatography
First, the cell culture supernatant expressing the antibody was centrifuged at a high speed to collect the supernatant. The Protein A affinity column was washed with 3-5× column volume of 6M guanidine hydrochloride, and then washed with 3-5× column volume of pure water. The column was equilibrated with 3-5× column volume of 1×PBS (pH7.4) buffer system as equilibrium buffer. The cell supernatant was loaded at a low flow rate, and the flow rate was controlled so that the retention time was about 1 min or longer; after the binding was finished, the column was washed with 3-5× column volume of 1×PBS (pH 7.4) until the UV absorption dropped to the baseline. Samples were eluted with 0.1M acetic acid/sodium acetate (pH3.0-3.5) buffer, the elution peaks were pooled according to UV detection. The eluted product was preserved for later use after the pH was adjusted to 5-6 with 1M Tris-HCl (pH8.0). The eluted product can be subjected to solution replacement according to methods well-known to those skilled in the art, for example, replacing the solution with a desired buffer system by ultrafiltration-concentration using an ultrafiltration tube, or replacing the solution with a desired buffer system by using molecular exclusion such as G-25 desalting column, or removing the aggregation components from the eluted product to improve the purity of the sample by using high-resolution molecular exclusion column (such as Superdex 200).
3. Purification of Human CD73, CD73-Myc-his, CD73-3Flag and Other CD73-Related Recombinant Proteins by Nickel Column
The cell expression supernatant sample was centrifuged at high speed to remove impurities, the buffer was replaced with PBS, and imidazole was added to a final concentration of 5 mM. The nickel column was equilibrated with PBS solution containing 5 mM imidazole, and washed with 2-5× column volume. The supernatant sample after replacement was loaded onto the column for binding, and the selected medium can be nickel columns of different companies. The column was washed with PBS solution containing 5 mM imidazole until the A280 reading dropped to the baseline. The chromatography column was rinsed with PBS+10 mM imidazole to remove the non-specifically bound proteins, and the effluent was collected. The target protein was eluted with PBS solution containing 300 mM imidazole, and the elution peak was collected.
The collected eluted product can be further purified by gel chromatography Superdex200 (GE) after concentration, with PBS served as the mobile phase, aggregates and impurity protein peaks were removed, and the elution peak of the target product was collected. The resulting protein was identified by electrophoresis, peptide mapping and LC-MS, and the verified proteins were aliquoted for use.
I. Immunization
The anti-human CD73 monoclonal antibodies were produced by immunizing mice. SJL white mice, female, 6-8 weeks old were used for experiment (Beijing Charles River Laboratory Animal Technology Co., Ltd., animal production license number: SCXK (Beijing) 2012-0001). Feeding environment: SPF level. After purchased, the mice were kept in the laboratory environment for 1 week, 12/12 hours light/dark cycle, at temperature of 20-25° C.; humidity of 40-60%. Then, the mice that had been adapted to the environment were immunized according to the following schemes. The immune antigen was CHO cells overexpressing CD73 (SEQ ID NO:1).
Immunization protocol: mice were immunized with CD73-overexpressing CHO cell line, 1×107 cells/mouse/time, via intraperitoneal injection. The cells were collected and were diluted to 1×108/ml with PBS, 100 μl/mouse was injected intraperitoneally (IP) on day 0, and then booster immunization was performed every 14 days. Blood samples were collected on day 21, 35, 49 and 63, the antibody titer in mouse serum was determined by ELISA method. After 7 to 9 immunizations, mice that had a high serum antibody titer reaching to a plateau were selected for splenocyte fusion. Three days before the splenocyte fusion, CD73-3Flag antigen solution prepared with saline was intraperitoneally injected (IP), 50 μg/mouse, for booster immunization.
II. Spleen Cell Fusion
Hybridoma cells were obtained by fusing splenic lymphocytes with myeloma Sp2/0 (ATCC® CRL-8287™) by using an optimized PEG-mediated fusion procedure. The fused hybridoma cells were resuspended in complete medium (DMEM medium comprising 20% FBS, 1×HAT, 1×OPI) at a density of 0.5-1×106 cells/ml, seeded in a 96-well plate with 100 μl/well, incubated at 37° C. and 5% CO2 for 3-4 days, supplemented with 100 μl/well of HAT complete medium, and continued to be cultured for 3-4 days until forming pinpoint-like clones. The supernatant was removed, 200 μl/well of HT complete medium (RPMI-1640 medium comprising 20% FBS, 1×HT and 1×OPI) was added, and incubated at 37° C., 5% CO2 for 3 days and then the cells were subjected to ELISA detection.
III. Screening of Hybridoma Cells
According to the growth density of hybridoma cells, the hybridoma culture supernatant was detected by binding ELISA method (see Example 3). MDA-MB-231 cell binding assay and cell enzyme activity inhibition assay were performed on cell supernatant collected from positive wells detected by binding ELISA assay (see Example 4). Some of the cells positive for both MDA-MB-231 cell binding assay and cell enzyme activity inhibition assay were timely expanded and cryopreserved; others were sub-cloned for 2 to 3 times until a single cell clone was obtained.
It was also required to perform CD73 binding ELISA, MDA-MB-231 cell binding assay, MDA-MB-231 cell enzyme activity inhibition assay for each subcloning. The hybridoma clones were obtained by screening via the above assays. The antibodies were further prepared by a method using serum-free cell culture. The antibodies were purified according to the Purification Example and used for Test Examples.
IV. Sequencing of the Positive Hybridoma Clones
The procedures of cloning the sequences from the positive hybridoma were as follows. Hybridoma cells in logarithmic growth phase were collected. RNAs were extracted with Trizol (Invitrogen, Cat No. 15596-018) according to the kit's instruction and were reversely transcribed with PrimeScript™ Reverse Transcription kit (Takara, Cat No. 2680A). The cDNAs resulting from reverse transcription were amplified by PCR using mouse Ig-Primer Set (Novagen, TB326 Rev. B 0503), and the amplified products were sent to a company for sequencing. After sequencing, murine anti-CD73 antibodies mab108, mab110 and mab127 were obtained. The amino acid sequences of the variable regions are as follows:
mab108 HCVR amino acid sequence is as shown in SEQ ID NO: 4,
QVQLKQSGPGLVQPSQSLSITCTVFGFSLK
SYGIQ
WVRQSPGKGLEWLG
VIWSGGSADYNAAFIS
RLSISKDNSKSQVFFKMNSLQGDDTAIYYCAG
QYGSV
WGQGTSVTVSS
mab108 LCVR amino acid sequence is as shown in SEQ ID NO: 5,
DIQMTQSPSSLSASLGERVSLTC
RASQDIGDRLN
WLQQEPDGTIKRLIY
ATSSLDS
GVPKRFSGSRSGSDYSLTISSLESEDFVDYYC
LQYAGSWT
FG
GGTKLEIK
mab110 HCVR amino acid sequence is as shown in SEQ ID NO: 6,
YINPNSFYIEYNQKFKDKATLTADTSSSTAYMQLSSLTSEDSAVYYCAR
GDYDLFYDMDNWGQGTSVTVSS
mab110 LCVR amino acid sequence is as shown in SEQ ID NO: 7,
DIQMTQSPSSLSASLGERVSLTC
RASQDIGNSLN
WLQQEPDGTIKRLIY
ATFRLDS
GVPKRFSGSRSGSDYSLTISSLESEDFVDYYC
QQYASFPWT
F
GGGTKLEIK
mab127 HCVR amino acid sequence is as shown in SEQ ID NO: 8,
EVQLQQSGPELVKPGESVKISCKASGYSFT
AYFMN
WVMQSHRKSLEWIG
RIYHNNGDTFYSQKFKG
KATLTVDKSSNTVHMELRSLTSEDSAVYFCAT
SYVGD
WGQGTTLTVSS
mab127 LCVR amino acid sequence is as shown in SEQ ID NO: 9,
DIQMTQSPSSLSASLGERVSLTC
RASQDIGDSLN
WLQQAPDGTLKRLIY
ATSSLDS
GVPRRFSGSRSGSDYSLTISSLESEDFVDYYC
LQYASFPWT
F
GGGTKLEIK
In the above-mentioned mab108, mab110, and mab127 antibody variable region sequences, the FR sequence is in italics, the underline is the CDR sequence determined according to Kabat numbering criteria, and the order of sequence is FR1-CDR1-FR2-CDR2-FR3-CDR3-FR4.
The resulting antibodies mab108, mab110, and mab127 in the present disclosure have very similar light chain CDR regions, with only a few amino acid differences. These light chain CDR regions can be represented by the general formulas: the antibody light chain LCDR1 is as shown in SEQ ID NO: 27: RASQDIGX1X2LN, wherein X1 is selected from D or N, X2 is selected from R or S; LCDR2 is as shown in SEQ ID NO: 28: ATX3X4LDS, where X3 is selected from F or S, X4 is selected from R or S; LCDR3 is as shown in SEQ ID NO: 29: X5QYAX6X7X8WT, wherein X5 is selected from L or Q, X6 is selected from S or G, X7 is selected from F or absence, and X8 is selected from S or P.
V. Preparation of Human IgG1 Chimeric Antibody
The above candidate molecules mab108, mab110 and mab127 obtained by hybridoma screening were amplified and sequenced to obtain the sequences encoding the variable regions. Forward and reverse primers were designed on the basis of the sequences obtained by sequencing, the gene to be sequenced was used as a template to construct the VH/VK gene fragment for each antibody via PCR, and then inserted into the expression vector pHr (with a signal peptide and hIgG1/hkappa constant region gene (CH1-Fc/CL) fragment) via homologous recombination to construct an expression plasmid for the full-length of recombinant chimeric antibody VH-CH1-Fc-pHr/VL-CL-pHr, resulting in three chimeric antibodies CH108, CH110 and CH127.
VI. Humanization of Murine Anti-Human CD73 Antibody
Human germline heavy chain and light chain variable region genes having high homology with murine antibodies were selected as templates by aligning against IMGT (http://imgt.cines.fr) human antibody variable germline gene database using MOE software (Molecular Operating Environment) software. The murine antibody CDRs were grafted into the corresponding human templates to form a variable region sequence in the order of FR1-CDR1-FR2-CDR2-FR3-CDR3-FR4. As needed, the amino acid(s) in the framework sequence was (were) back-mutated to the amino acids corresponding to the murine antibody to obtain the humanized anti-CD73 monoclonal antibody.
1. Humanization of Mab108
1.1 Selection of Mab108 Framework
For the murine antibody mab108, the light chain templates for humanization were IGKV1-17*01 and hjk4.1, and the heavy chain templates for humanization were IGHV2-26*01 and hjh4.1. Each of the murine antibody mab108 CDRs was grafted onto the human template and Hab108, a humanized antibody of mab108, was obtained, the variable region sequences thereof are as follows:
Hab108 HCVR (also known as VH-CDR graft) amino acid sequence is as shown in SEQ ID NO: 30:
EVTLKESGPVLVKPTETLTLTCTVSGFSLS
SYGIQ
WIRQPPGKLLEWLA
VIWSGGSADYNAAFIS
RLTISKDTSKSQVVLTMTNMDPVDTATYYCAR
QYGSV
WGQGTLVTVSS
Hab108 LCVR (also known as VL-CDR graft) amino acid sequence is as shown in SEQ ID NO: 31:
DIQMTQSPSSLSASVGDRVTITC
RASQDIGDRLN
WYQQKPGKAPKRLIY
ATSSLDS
GVPSRFSGSGSGTEFTLTISSLQPEDFATYYC
LQYAGSWT
FG
GGTKVEIK
Note: In the above-mentioned Hab108 antibody sequences, the italics represents FR sequence, the underlined portion represents the CDR sequences determined according to Kabat numbering criteria, and the order of sequence is FR1-CDR1-FR2-CDR2-FR3-CDR3-FR4.
1.2 Back Mutation Design for Humanized Antibody of Mab 108:
As needed, the amino acids in the humanized antibody FR region sequence of mab 108 were back-mutated to the amino acids corresponding to the murine antibody. The specifically designed back-mutations are shown in Table 2.
1.3 Humanized Antibodies of mAb 108:
As shown in Table 2, variable regions were obtained after back-mutation of the humanized antibodies of mab108. A variety of humanized antibodies of mab 108 were finally obtained after the combination of the variable regions. The variable region amino acid sequences of each antibody are as follows:
The specific variable region sequences of the humanized antibodies of mAb108 are as follows:
Hab108.VL1 amino acid sequence is as shown in SEQ ID NO: 31 (the same as that of Hab108 LCVR),
DIQMTQSPSSLSASVGDRVTITC
RASQDIGDRLN
WYQQKPGKAPKRLIY
ATSSLDS
GVPSRFSGSGSGTEFTLTISSLQPEDFATYYC
LQYAGSWT
FG
GGTKVEIK
Hab108.VL2 amino acid sequence is shown in SEQ ID NO: 32:
DIQMTQSPSSLSASVGDRVTITC
RASQDIGDRLN
WLQQKPGKAIKRLIY
ATSSLDS
GVPSRFSGSGSGTEYTLTISSLQPEDFATYYC
LQYAGSWT
FG
GGTKVEIK
Hab108.VL3 amino acid sequence is as shown in SEQ ID NO: 33:
DIQMTQSPSSLSASVGDRVTITC
RASQDIGDRLN
WLQQKPGGAIKRLIY
ATSSLDS
GVPSRFSGSGSGTEYTLTISSLQPEDFATYYC
LQYAGSWT
FG
GGTKVEIK
Hab108.VL4 amino acid sequence is as shown in SEQ ID NO: 34:
DIQMTQSPSSLSASVGDRVTITC
RASQDIGDRLN
WLQQKPGGAIKRLIY
ATSSLDS
GVPSRFSGSGSGSEYTLTISSLOPEDFADYYC
LQYAGSWT
FG
GGTKVEIK
Hab108.VL5 amino acid sequence is as shown in SEQ ID NO: 35:
DIQMTQSPSSLSASVGDRVTITC
RASQDIGDRLN
WLQQKPGKAIKRLIY
A
TSSLDS
GVPKRFSGSGSGTEYTLTISSLQPEDFATYYC
LQYAGSWT
FGGG
TKVEIK
Hab108.VL6 amino acid sequence is as shown in SEQ ID NO: 36:
DIQMTQSPSSLSASVGDRVTITC
RASQDIGDRLN
WLQQKPGGAIKRLIY
A
TSSLDS
GVPKRFSGSGSGTEYTLTISSLQPEDFATYYC
LQYAGSWT
FGGG
TKVEIK
Hab108.VH1 amino acid sequence is as shown in SEQ ID NO: 30 (the same as that of Hab108 HCVR),
EVTLKESGPVLVKPTETLTLTCTVSGFSLS
SYGIQ
WIRQPPGKLLEWLA
V
IWSGGSADYNAAFIS
RLTISKDTSKSQVVLTMTNMDPVDTATYYCAR
QYG
SV
WGQGTLVTVSS
Hab108.VH2 amino acid sequence is as shown in SEQ ID NO: 37:
EVTLKESGPVLVKPTETLTLTCTVSGFSLS
SYGIQ
WIRQPPGKLLEWLA
V
IWSGGSADYNAAFIS
RLTISKDTSKSQVVLTMTNMDPVDTATYYCAR
QYG
SV
WGQGTLVTVSS
Hab108.VH3 amino acid sequence is as shown in SEQ ID NO: 38:
EVTLKESGPVLVKPTETLTLTCTVSGFSLS
SYGIQ
WVRQPPGKLLEWLG
V
IWSGGSADYNAAFIS
RLTISKDTSKSQVVLTMTNMDPVDTATYYCAG
QYG
SV
WGQGTLVTVSS
Hab108.VH4 amino acid sequence is as shown in SEQ ID NO: 39:
EVTLKQSGPGLVKPTETLTLTCTVSGFSLS
SYGIQ
WVRQPPGKGLEWLG
V
IWSGGSADYNAAFIS
RLTISKDTSKSQVVLTMTNMDPVDTATYYCAG
QYG
SV
WGQGTLVTVSS
Hab108.VH5 amino acid sequence is as shown in SEQ ID NO: 40:
EVTLKESGPVLVKPTETLTLTCTVSGFSLK
SYGIQ
WVRQPPGKLLEWLG
V
IWSGGSADYNAAFIS
RLTISKDTSKSQVVLTMTNMDPVDTATYYCAG
QYG
SV
WGQGTLVTVSS.
2. Humanization of Mab110
2.1 Selection of Mab110 Framework
For the murine antibody mab110, the light chain templates for humanization were IGKV1-17*01 and hjk4.1, and the heavy chain templates for humanization were IGHV1-3*01 and hjh6.1. Each of the murine antibody mab110 CDRs was grafted onto the human template and Hab110, a humanized antibody of mab110, was obtained, the variable region sequences thereof are as follows:
Hab110 HCVR (also known as VH-CDR graft) amino acid sequence is as shown in SEQ ID NO: 41:
EVQLVQSGAEVKKPGASVKVSCKASGYTFT
SYTMH
WVRQAPGQRLEWMG
Y
INPNSFYIEYNQKFKD
RVTITRDTSASTAYMELSSLRSEDTAVYYCAR
GD
YDLFYDMDN
WGQGTTVTVSS
Hab110 LCVR (also known as VL-CDR graft) amino acid sequence is as shown in SEQ ID NO: 42:
DIQMTQSPSSLSASVGDRVTITC
RASQDIGNSLN
WYQQKPGKAPKRLIY
A
TFRLDS
GVPSRFSGSGSGTEFTLTISSLQPEDFATYYC
QQYASFPWT
FGG
GTKVEIK
Note: In the above-mentioned Hab110 antibody sequences, the italics represents the FR sequence, the underlined portion represents the CDR sequences, and the order of sequence is FR1-CDR1-FR2-CDR2-FR3-CDR3-FR4.
2.2 Back Mutation Design for Mab 110:
As needed, the amino acids in the humanized antibody FR region sequence of mab 110 were back-mutated to the amino acids corresponding to the murine antibody. The specifically designed back-mutations are shown in Table 4.
2.3 Humanized Antibodies of mAb 110:
The designed back-mutations for humanized antibodies of mab110 as indicated in Table 4 were combined, and then further recombined with human heavy and light constant regions. A variety of humanized antibodies of mab 110 were finally obtained and the variable region amino acid sequences thereof are shown as follows:
The specific variable region sequences of the humanized antibodies of mAb110 are as follows:
Hab110.VL1 amino acid sequence is as shown in SEQ ID NO: 42 (the same as that of Hab110 LCVR):
DIQMTQSPSSLSASVGDRVTITC
RASQDIGNSLN
WYQQKPGKAPKRLIY
A
TFRLDS
GVPSRFSGSGSGTEFTLTISSLQPEDFATYYC
QQYASFPWT
FGG
GTKVEIK
Hab110.VL2 amino acid sequence is as shown in SEQ ID NO: 43:
DIQMTQSPSSLSASVGDRVTITC
RASQDIGNSLN
WLQQKPGKAIKRLIY
A
TFRLDS
GVPSRFSGSRSGTEYTLTISSLQPEDFATYYC
QQYASFPWT
FGG
GTKVEIK
Hab110.VL3 amino acid sequence is as shown in SEQ ID NO: 44:
DIQMTQSPSSLSASVGDRVTITC
RASQDIGNSLN
WLQQKPGGAIKRLIY
A
TFRLDS
GVPSRFSGSRSGTEYTLTISSLQPEDFADYYC
QQYASFPWT
FGG
GTKVEIK
Hab110.VH1 amino acid sequence is as shown in SEQ ID NO: 41 (the same as that of Hab110 HCVR):
EVQLVQSGAEVKKPGASVKVSCKASGYTFT
SYTMH
WVRQAPGQRLEWMG
Y
INPNSFYIEYNQKFKD
RVTITRDTSASTAYMELSSLRSEDTAVYYCAR
GD
YDLFYDMDN
WGQGTTVTVSS
Hab110.VH2 amino acid sequence is as shown in SEQ ID NO: 45:
EVQLVQSGAEVKKPGASVKVSCKASGYTFT
SYTMH
WVRQAPGQRLEWMG
Y
INPNSFYIEYNQKFKD
RVTITADTSASTAYMELSSLRSEDTAVYYCAR
GD
YDLFYDMDN
WGQGTTVTVSS
Hab110.VH3 amino acid sequence is as shown in SEQ ID NO: 46:
EVQLVQSGAEVKKPGASVKVSCKASGYTFT
SYTMH
WVRQAPGQRLEWIG
Y
INPNSFYIEYNQKFKD
RATLTADTSASTAYMELSSLRSEDTAVYYCAR
GD
YDLFYDMDN
WGQGTTVTVSS
Hab110.VH4 amino acid sequence is as shown in SEQ ID NO: 47:
EVQLVQSGAEVKKPGASVKVSCKASGYTFT
SYTMH
WVRQAPGQRLEWIG
YI
NPNSFYIEYNQKFKD
KATLTADTSASTAYMELSSLRSEDTAVYYCAR
GDYD
LFYDMDN
WGQGTTVTVSS
Hab110.VH5 amino acid sequence is as shown in SEQ ID NO: 48:
EVQLVQSGAEVKKPGASVKVSCKASGYTFT
SYTMH
WVKQAPGQGLEWIG
YI
NPNSFYIEYNQKFKD
KATLTADTSASTAYMELSSLRSEDTAVYYCAR
GDYD
LFYDMDN
WGQGTTVTVSS.
3. Humanization of Mab127
3.1 Selection of Mab127 Framework
For the murine antibody mab127, the light chain templates for humanization were IGKV1-17*01 and hjk4.1, and the heavy chain templates for humanization were IGHV1-46*01 and hjh6.1. Each of the murine antibody mab127 CDRs was grafted onto the human template and Hab127, a humanized antibody of mab127, was obtained, the variable region sequences thereof are as follows:
Hab127 HCVR (also known as VH-CDR graft) amino acid sequence is as shown in SEQ ID NO: 49:
EVQLVQSGAEVKKPGASVKVSCKASGYTFT
AYFMN
WVRQAPGQGLEWMG
RI
YHNNGDTFYSQKFKG
RVTMTRDTSTSTVYMELSSLRSEDTAVYYCAR
SYVG
D
WGQGTTVTVSS
Hab127 LCVR (also known as VL-CDR graft) amino acid sequence is as shown in SEQ ID NO: 50:
DIQMTQSPSSLSASVGDRVTITC
RASQDIGDSLN
WYQQKPGKAPKRLIY
AT
SSLDS
GVPSRFSGSGSGTEFTLTISSLQPEDFATYYC
LQYASFPWT
FGGGT
KVEIK
Note: In the above-mentioned Hab127 antibody sequences, the italics represents FR sequence, the underlined portion represents the CDR sequences (determined and annotated according to Kabat numbering criteria), and the sequence order is FR1-CDR1-FR2-CDR2-FR3-CDR3-FR4.
3.2 Back Mutation Design for Mab 127:
As needed, the amino acids in the humanized antibody FR region sequence of mab 127 were back-mutated to the amino acids corresponding to the murine antibody. The specifically designed back-mutations are shown in Table 6.
3.3 Humanized Antibodies of mAb 127:
The designed back-mutations for humanized antibodies of mab127 as indicated in Table 6 were combined and then further recombined with human heavy and light constant regions. A variety of humanized antibodies of mab 127 were finally obtained and the variable region amino acid sequences thereof are shown as follows:
The specific variable region sequences of the humanized antibodies of mab127 are as follows:
Hab127.VL1 amino acid sequence is as shown in SEQ ID NO: 50 (the same as that of Hab127 LCVR),
DIQMTQSPSSLSASVGDRVTITC
RASQDIGDSLN
WYQQKPGKAPKRLIY
AT
SSLDS
GVPSRFSGSGSGTEFTLTISSLQPEDFATYYC
LQYASFPWT
FGGGT
KVEIK
Hab127.VL2 amino acid sequence is as shown in SEQ ID NO: 51:
DIQMTQSPSSLSASVGDRVTITC
RASQDIGDSLN
WLQQKPGKAPKRLIY
AT
SSLDS
GVPSRFSGSGSGTEYTLTISSLQPEDFATYYCLQYASFPWTFGGGT
KVEIK
Hab127.VL3 amino acid sequence is as shown in SEQ ID NO: 52:
DIQMTQSPSSLSASVGDRVTITC
RASQDIGDSLN
WLQQKPGGALKRLIY
AT
SSLDS
GVPSRFSGSGSGTEYTLTISSLQPEDFATYYCLQYASFPWTFGGGT
KVEIK
Hab127.VL4 amino acid sequence is as shown in SEQ ID NO: 53:
DIQMTQSPSSLSASVGDRVTITC
RASQDIGDSLN
WLQQKPGGALKRLIY
AT
SSLDS
GVPSRFSGSGSGSDYTLTISSLQPEDFATYYCLQYASFPWTFGGGT
KVEIK
Hab127.VH1 amino acid sequence is as shown in SEQ ID NO: 54:
EVQLVQSGAEVKKPGASVKVSCKASGYTFT
AYFMN
WVRQAPGQGLEWMG
RI
YHNNGDTFYSQKFKG
RVTMTVDKSTSTVYMELSSLRSEDTAVYYCAT
SYVG
D
WGQGTTVTVSS
Hab127.VH2 amino acid sequence is as shown in SEQ ID NO: 55:
EVQLVQSGAEVKKPGASVKVSCKASGYTFT
AYFMN
WVMQAPGQGLEWMG
RI
YHNNGDTFYSQKFKG
RVTMTVDKSTSTVYMELSSLRSEDTAVYYCAT
SYVG
D
WGQGTTVTVSS
Hab127.VH3 amino acid sequence is shown in SEQ ID NO: 56:
EVQLVQSGAEVKKPGASVKVSCKASGYTFT
AYFMN
WVMQAPGQGLEWIG
RI
YHNNGDTFYSQKFKG
RATLTVDKSTSTVYMELSSLRSEDTAVYYCAT
SYVG
D
WGQGTTVTVSS
Hab127.VH4 amino acid sequence is as shown in SEQ ID NO: 57:
EVQLVQSGAEVKKPGASVKVSCKASGYTFT
AYFMN
WVMQAPGQSLEWIG
RI
YHNNGDTFYSQKFKG
RATLTVDKSTSTVYMELRSLRSEDTAVYYCAT
SYVG
D
WGQGTTVTVSS.
3.4 Hot Spot Mutations of Humanized Antibody of Mab127:
Amino acid mutations were performed on NNG based on the antibody structure of the mab127 heavy chain HCDR2 by a computer simulation method. In one of the preferred embodiments, we performed amino acid mutations on the NNG of Hab127.VH1 HCDR2. The sequences of Hab127.VH1 after mutation are as follows:
Hab127.VH1a amino acid sequence is shown in SEQ ID NO: 58:
Hab127.VH1b amino acid sequence is shown in SEQ ID NO: 59:
Hab127.VH1c amino acid sequence is shown in SEQ ID NO: 60:
Hab127.VH1d amino acid sequence is shown in SEQ ID NO: 61:
Hab127.VH1e amino acid sequence is shown in SEQ ID NO: 62:
Hab127.VH1f amino acid sequence is shown in SEQ ID NO: 63:
Hab127.VH1g amino acid sequence is shown in SEQ ID NO: 64:
Hab127.VH1h amino acid sequence is shown in SEQ ID NO: 65:
Hab127.VH1i amino acid sequence is shown in SEQ ID NO: 66:
The general formula of the humanized antibody HCDR2 amino acid sequence of mab127 after hot spot mutation is as shown in SEQ ID NO: 67: RIYH X9 X10X11DTFYSQKFKG, wherein X9 is selected from N, Q, L or H, and X10 is selected from N, Q, L, T, K, E or H, X11 is selected from V or G; preferably, the humanized antibody HCDR2 amino acid sequence of mab127 after hot spot mutation is as shown in SEQ ID NOs: 68-76:
4. Construction and Expression of Anti-Human CD73 Humanized Antibody
Primers were designed, VH/VK gene fragment of each humanized antibody was constructed by PCR and then inserted into the expression vector pHr (with a signal peptide and constant region gene (CH1-FC/CL) fragment) via homologous recombination to construct an expression vector for a full-length antibody VH-CH1-FC-pHr/VK-CL-pHr. For the humanized antibody, the constant region can be selected from the light chain constant region of human κ, λ chain or variant(s) thereof, and can be selected from the heavy chain constant region of IgG1, IgG2, IgG3 or IgG4 or variant(s) thereof. Non-limiting examples include optimizing the constant region of human IgG1, IgG2 or IgG4 to improve antibody function. For example, the ADCC of the antibody can be reduced by point mutations in the constant region such as D265A, N297A, L234A/L235A or L234F/L235E, and the CDC of the antibody can be reduced by P331S or the mutation(s) nearby, and mutants such as S228P, F234A and L235A in constant region.
An exemplary anti-human CD73 humanized antibody constant region sequence is as follows:
The amino acid sequence of the heavy chain constant region is as shown in SEQ ID NO: 77:
The amino acid sequence of the light chain constant region of the anti-human CD73 humanized antibody is shown in SEQ ID NO: 78:
An exemplary anti-human CD73 humanized antibody full-length amino acid sequence is as follows:
Hab108.64 antibody heavy chain amino acid sequence is shown in SEQ ID NO: 79:
Hab108.64 antibody light chain amino acid sequence is shown in SEQ ID NO: 80:
Hab110.21 antibody heavy chain amino acid sequence is shown in SEQ ID NO: 81:
Hab110.21 antibody light chain amino acid sequence is shown in SEQ ID NO: 82:
Hab127. 31d antibody heavy chain amino acid sequence is shown in SEQ ID NO: 83:
Hab127. 31d antibody light chain amino acid sequence is shown in SEQ ID NO: 84:
1. ELISA Assay of the Binding of Anti-CD73 Antibodies to Human CD73 Protein;
The binding of anti-CD73 antibodies to human CD73 protein was tested by ELISA assay. The biotinylated CD73 fusion protein was immobilized onto a 96-well microtiter plate by binding to the Streptavidin coated on the microtiter plate. The signal strength after the addition of the antibody was used to determine the binding activity of the antibody to CD73. The specific experimental procedures were as follows:
Streptavidin (Sigma, Cat No. S4762-5MG) was diluted with PBS, pH7.4 (Shanghai BasalMedia, Cat No. B320) buffer to a concentration of 3m/ml, was added into the 96-well microtiter plate (Corning, Cat No. CLS3590-100EA), 50 μl/well, and incubated in an incubator at 37° C. for 2 hours. The liquid was discarded, 250 μl/well blocking solution (5% skim milk (BD skim milk, Cat No. 232100) diluted in PBS) was added, and incubated in an incubator at 37° C. for 3 hours or at 4° C. overnight (16-18 hours) for blocking. After blocking, the blocking solution was discarded; the plate was washed for 5 times with PBST buffer (PBS containing 0.05% tween-20, pH7.4), 50 μl/well of biotinylated CD73-myc-his fusion protein (Tojin Chemical, Cat No. LK03, biotinylation method was according to the kit's instruction) diluted with sample diluent (PBS containing 1% BSA, pH7.4) was added, and incubated in an incubator at 37° C. 1 hour or at 4° C. overnight. After the incubation was finished, the reaction solution was removed from the microtiter plate, the plate was washed for 5 times with PBST, 50 μl/well of various concentrations of each of the test antibodies (purified hybridoma antibodies or humanized antibodies, diluted with sample diluent) were added, and incubated in an incubator at 37° C. for 1 hour. After the incubation was finished, the plate was washed for 5 times with PBST, 50 l/well of HRP-labeled goat anti-mouse secondary antibody (Jackson Immuno Research, Cat No. 115-035-003) or goat anti-human secondary antibody (Jackson Immuno Research, Cat No. 109-035-003) diluted with sample diluent was added, and incubated at 37° C. for 1 hour. The plate was washed for 5 times with PBST, 50 μl/well of TMB chromogenic substrate (KPL, Cat No. 52-00-03) was added, incubated at room temperature for 5-10 min, and 50 μl/well of 1M H2SO4 was added to stop the reaction. The absorbance value was read by a microplate reader (Molecular Devices, VERSA max) at a wavelength of 450 nm, and the data was analyzed with GraphPad Prism 5. The binding of anti-CD73 antibody to human CD73 protein was calculated as EC50 value. The experimental results are shown in
The experimental results show that the anti-CD73 antibodies Hab110.21, Hab127.31d and Hab108.64 of the present disclosure all have favorable binding activity to human CD73 protein, and the EC50 values of the three anti-CD73 antibodies to human CD73 protein are all lower than that of the positive control antibody CPX006 (antibody CPX-006 disclosed in patent application WO2018013611).
2. ELISA Assay Showing the Binding of Anti-CD73 Antibodies to Cynomolgus Monkey CD73 Protein
The cross-binding activity of anti-CD73 antibodies to cynomolgus monkey CD73 protein was tested by ELISA assay. The cynomolgus monkey CD73 fusion protein was directly coated onto a 96-well microtiter plate. The signal strength after the addition of the antibody was used to determine the binding activity of the antibody to cynomolgus monkey CD73. The specific experimental procedures were as follows:
Cynomolgus monkey CD73 (Sino Biological, Cat No. 90192-C08H) was diluted with PBS, pH7.4 (Shanghai BasalMedia, Cat No. B320) buffer to a concentration of 2 μg/ml, was added into the 96-well microtiter plate at 50 μl/well, and was incubated in an incubator at 37° C. for 2 hours. The liquid was discarded, 250 μl/well blocking solution (5% skim milk diluted in PBS) was added, and incubated in an incubator at 37° C. for 3 hours or at 4° C. overnight (16-18 hours) for blocking. After the blocking was finished, the blocking solution was discarded, the plate was washed for 5 times with PBST buffer, 50 μl/well of various concentrations of each of the test antibodies (purified hybridoma antibodies or humanized antibodies, diluted with sample diluent) were added, and incubated in an incubator at 37° C. for 1 hour. After the incubation was finished, the plate was washed for 5 times with PBST, 50 μl/well of HRP-labeled goat anti-mouse secondary antibody (Jackson Immuno Research, Cat No. 115-035-003) or goat anti-human secondary antibody (Jackson Immuno Research, Cat No. 109-035-003) diluted with sample diluent was added, and incubated at 37° C. for 1 hour. The plate was washed for 5 times with PBST, 50 μl/well of TMB chromogenic substrate (KPL, Cat No. 52-00-03) was added, incubated at room temperature for 5-10 min, and 50 μl/well of 1M H2SO4 was added to stop the reaction. The absorbance value was read by a microplate reader (Molecular Devices, VERSA max) at a wavelength of 450 nm, and the data was analyzed with GraphPad Prism 5. The binding of anti-CD73 antibody to monkey CD73 was calculated as EC50 value. The experimental results are shown in
The experimental results show that the anti-CD73 antibodies Hab110.21, Hab127.31d, and Hab108.64 of the present disclosure all have favorable binding effects with monkey CD73 protein.
3. Binding Assay of Anti-CD73 Antibodies to MDA-MB-231 Cells
The binding of anti-CD73 antibodies to tumor cell line MDA-MB-231 that highly expresses human CD73 was tested by ELISA assay. The MDA-MB-231 cells were directly coated onto a 96-well microtiter plate. The signal strength after the addition of the antibody was used to determine the binding activity of the antibody to MDA-MB-231 cells. The specific experimental procedures were as follows:
MDA-MB-231 cells (ATCC, Cat No HTB-26) were seeded in the 96-well plate (Corning, Cat No. CLS3599-100EA) at a density of 6×105/ml, 100 μl/well, and cultured overnight. The supernatant was discarded, the plate was washed with PBS for three times, 100 μl/well of cell immune fixed solution (Beyotime, Cat No. P0098) was added and fixed for half an hour at room temperature, and the plate washed with PBS for four times. The liquid was discarded, 250 μl/well blocking solution (5% skim milk diluted in PBS) was added, and incubated in an incubator at 37° C. for 3 hours. After the blocking was finished, the blocking solution was discarded, the plate was washed for 5 times with PBST buffer, 50 μl/well of various concentrations of each of the test antibodies were added, and incubated in an incubator at 37° C. for 1 hour. After the incubation was finished, the plate was washed for 5 times with PBST, 50 μl/well of HRP-labeled goat anti-mouse secondary antibody (Jackson Immuno Research, Cat No. 115-035-003) or goat anti-human secondary antibody (Jackson Immuno Research, Cat No. 109-035-003) diluted with sample diluent was added, and incubated at 37° C. for 1 hour. The plate was washed for 5 times with PBST, 50 μl/well of TMB chromogenic substrate (KPL, Cat No. 52-00-03) was added, incubated at room temperature for 5-15 min, and 50 μl/well of 1M H2SO4 was added to stop the reaction. The absorbance value was read by a microplate reader (Molecular Devices, VERSA max) at a wavelength of 450 nm, and the data was analyzed with GraphPad Prism 5. The binding of anti-CD73 antibody to MDA-MB-231 cells over-expressing CD73 was calculated as EC50 value. The experimental results are shown in
The experimental results show that the anti-CD73 antibodies Hab110.21, Hab127.31d, and Hab108.64 of the present disclosure all have favorable binding effect with the tumor cell line MDA-MB-231.
4. Biacore Detection of Anti-CD73 Antibodies
In this experiment, Biacore instrument was used to determine the affinity of the humanized anti-CD73 antibodies to be tested with human CD73 (huCD73) and monkey CD73 (cynoCD73).
A certain amount of test antibody was affinity-captured with Protein A biosensing chip (Cat. #29127556, GE), and then a certain concentration of human or monkey CD73 antigen was allowed to flow through the surface of the chip. The reaction signals were detected in real time with Biacore instrument (Biacore T200, GE) to generate a binding and dissociation curve. At the end of each cycle, after the dissociation was completed, the biosensor chip was washed and regenerated with Glycine-HCl, pH1.5 (Cat. #BR-1003-54, GE). The running buffer for the assay was 1×HBS-EP buffer solution (Cat. #BR-1001-88, GE).
The data obtained from the experiment was fitted against (1:1) Langmuir model using GE Biacore T200 Evaluation version 3.0 software, and the affinity values were obtained, as shown in Table 12 and Table 13 for details.
The experimental results show that the anti-CD73 antibodies Hab110.21, Hab127.31d and Hab108.64 of the present disclosure can all bind to human CD73 and monkey CD73 with high affinity.
The inhibitory effect of anti-CD73 antibodies on the enzyme activity was measured by chemiluminescence method, wherein the chemiluminescence method was used to detect the activity of antibodies in inhibiting the enzyme activity in MDA-MB-231 cells which highly express human CD73. The antibody was added into MDA-MB-231 cells, and the inhibitory effect on CD73 enzyme activity was determined by measuring the remaining amount of active substrate of CD73 enzyme. The specific experimental procedures were as follows:
MDA-MB-231 cells (ATCC, HTB-26) were seeded in a 96-well plate at a density of 2×105/ml, 100 μl/well, and cultured overnight. The supernatant was discarded, the plate was washed with PBS once, 50 μl/well of various concentrations of each of the test antibodies (purified hybridoma antibodies or humanized antibodies, diluted with cell culture medium (RPMI-1640, Hyclone, Cat No SH30809.01)) were added, and incubated in an incubator at 37° C. for 0.5 hour. Then 50 μl/well of adenosine-5′-monophosphate (Sigma, Cat No A1752-5MG, diluted with cell culture medium) was added, and incubated in an incubator in CO2 at 37° C. for 3 hours. After the incubation was finished, 25 μl/well of the reaction solution was transferred into a new 96-well plate (PerkinElmer, Cat No 6005290), 25 μl/well of 5′-adenosine triphosphate (Sigma, Cat No A7699-5MG, diluted in cell culture medium) was added, and finally 50 μl/well of CellTiter Glo (Promega, Cat No G7573) was added. The chemiluminescence values were read under Cytation5 (Biotek), data were analyzed with GraphPad Prism5, and the inhibition of enzyme activity in MDA-MB-231 cells by anti-CD73 antibodies was calculated as IC50 value.
The experimental results show that the anti-CD73 antibodies Hab110.21, Hab127.31d, and Hab108.64 of the present disclosure all can significantly inhibit the enzyme activity of CD73 (expressed on tumor cells MDA-MB-231) on its substrates, and the maximal inhibitory effect on enzyme activity is higher than that of MEDI9447, a positive control antibody (see antibody MEDI9447 disclosed in patent application WO2016075099) (see
CD4+ T cells were isolated and purified from PBMC prepared from human whole blood by using CD4 Microbeads (CD4 microspheres, Miltenyi Biotec, Cat #130-045-101). CD4+ T cells were stained with Cell Proliferation Dye eFluor™ 670 (Invitrogen, Cat #65-0840). Human CD3/CD28 Dynabeads (CD3/CD28 immunomagnetic beads, Gibco, Cat #11131D) and 150 U/ml recombinant human IL-2 (PeproTech, Cat #200-02) were added to the stained CD4+ T cells for activation, and then 50,000 cells per well (80 μl per well) were added into a round-bottom 96-well plate, and incubated in an incubator at 37° C., 5% CO2 for 1 hour. Then 10 μl of CD73 antibody or control molecules (including MEDI9447, CPX006 positive control, medium blank control, and isotype human IgG negative control) was added into each well, with the final concentration of 100 ng/ml, 10 ng/ml, 1 ng/ml and 0.1 ng/ml, and incubated in an incubator at 37° C., 5% CO2, for an hour as pre-incubation, finally 10 μl of AMP (adenosine-5′-sodium monophosphate, SIGMA, Cat #A1752-1G) was added to each well, with a final concentration of 400 μM, and cultured in an incubator at 37° C., 5% CO2 for 4 days. The medium used for the culture of CD4+ T cells was X-VIVO™ 15 serum-free medium (Lonza, Cat #04-418QCN). After 4 days, the cells were washed with flow buffer (PBS containing 2.5% FBS), and the cells were detected by flow cytometry to obtain APC Fluorescence value.
The experimental results are shown in
1. Experiment of Anti-CD73 Antibody Inhibiting MDA-MB-231 Subcutaneous Xenograft Tumor
Experimental method: 100 μl of MDA-MB-231 (ATCC bank) cells (2.0×106 cells) were subcutaneously inoculated into the right flank of 50 NSG mice (B-NDG® mice, purchased from Beijing Biocytogene Biotechnology Co., Ltd.). After tumor was developed (˜160 mm3), the mice with too large or too small body weight or tumor volume were excluded. The remaining mice were randomly divided, based the tumor volume, into 6 groups, 6 mice per group, as shown in Table 15. PBMCs (Peripheral Blood Mononuclear Cells) were isolated from the blood of two volunteers, and mixed at a ratio of 1:1 without stimulation. 0.715×107/100 μl were injected intraperitoneally into mice. From the next day, the anti-CD73 antibodies of the present disclosure and control molecules (including isotype human IgG blank control, MEDI9447 positive control, CPX006 positive control) were injected intraperitoneally, twice a week, for a total of 3 weeks. The tumor volume and body weight were measured twice a week, and the data were recorded. Grouping and dosing are shown in Table 15.
Excel statistical software was used: the average value was calculated as avg (Average); SD (Standard deviation) value was calculated as STDEV; SEM (Standard Error of Mean) value was calculated as STDEV/SQRT (Square root) (number of animals in each group); GraphPad Prism software was used for graphing, Two-way ANOVA (two-way analysis of variance) or One-way ANOVA (one-way analysis of variance) was used for statistical analysis of data.
The tumor volume (V) was calculated according to the following formula:
V=½×Llong×Lshort2
Relative volume (RTV)=VT/V0
Tumor inhibition rate (%)=(CRTV−TRTV)/CRTV (%)
Wherein, V0 and VT represent the tumor volume at the beginning of and at the end of the experiment, respectively. CRTV and TRTV represent the relative tumor volume of the blank control group (Vehicle) and the test group at the end of the experiment, respectively.
Experimental Results:
From D1 to D20, subcutaneous injection was performed twice a week, and the effect of anti-CD73 antibodies on inhibiting the growth of MDA-MB-231 tumor was detected. The experimental results are shown in Table 16 and
2. Inhibition Experiment of Anti-CD73 Antibody on Lung Metastatic MDA-MB-231-Luc
Experimental Method:
MDA-MB-231-LUC cells (Caliper, USA) were cultivated, and incubated with human isotype IgG or CD73 antibody for 2 hours before inoculation, the final concentration of the antibody was 10 μg/ml, and then 200 μl (2.5×105 cells) was injected into the tail vein of each of the NSG mice. The mice were divided into 4 groups, 5-7 mice per group, as shown in Table 17. PBMCs (Peripheral Blood Mononuclear Cells) were isolated from the blood of two volunteers, and mixed at a ratio of 1:1 without stimulation. 0.57×107/100 μl were injected intraperitoneally into mice. From the next day, the antibody was injected intraperitoneally, twice a week for a total of 3 weeks. The in vivo bioluminescence values were measured twice a week, the body weight was measured and the data were recorded. Grouping and dosing are shown in Table 17.
Excel statistical software was used: both the body weight of each animal group, and the tumor bioluminescence value ROI value (region of interest; unit p/s (photons per second, the number of photons emitted from the animal body surface per unit time)) are represented as Mean±SEM. GraphPad Prism software was used for graphing, and the data were statistically analyzed by Two-way ANOVA.
relative lung bioluminescence value: relative ROI (R−ROI)=ROIT/ROI0, ROIT is the lung bioluminescence value at the end of the experiment, and ROI0 is the lung bioluminescence value at the beginning of the experiment.
Tumor inhibition rate (%)=(TR-ROI−CR-ROI)/CR-ROI (%)
Wherein, TR-ROI and CR-ROI are the relative lung bioluminescence values of the administration group and the control group at the end of the experiment, respectively.
Experimental Results:
From D1 to D18, subcutaneous injection was performed twice a week, and the effect of anti-CD73 antibodies on inhibiting the lung metastatic MDA-MB-231-Luc was detected. The experimental results are shown in Table 18,
Eighteen C57 mice, females, were purchased from Sippr-BK Lab Animal Co., Ltd. Mice were adapted to the laboratory environment for 4-day, free access to food and water, 12/12 hour light/dark cycle, at a temperature of 16-26° C., relative humidity 40-70%, and the administration was started when the body weight ranged from 18 g to 22 g. On the day of the experiment, the mice were equally divided into 6 groups, wherein three groups were injected with the agents to be tested (Hab108.64, Hab110.21, and Hab127.31d) via tail vein (IV), and the other three groups were injected subcutaneously (SC) with the agents to be tested (Hab108.64, Hab110.21 and Hab127.31d). The administration dose was 3 mg/kg, and the administration volume was 10 mL/kg.
Blood samples were collected at various time points, i.e., prior to administration, and 5 min, 8h, 1d, 2d, 4d, 7d, 10d, 14d, 21d and 28d after administration. About 0.1 ml whole blood was drawn from each animal without adding anticoagulant. The blood samples were placed at 4° C. for 30 minutes, centrifuged at 1000 g for 15 minutes, and the upper serum was transferred into an EP tube and stored at −80° C.
The concentration of the antibodies in serum was detected by ELISA method, and the pharmacokinetic parameters of the agents to be tested were calculated by Winnolin software. The experimental results are shown in Table 19. The results show that the Hab108.64, Hab110.21 and Hab127.31d of the present disclosure have favorable in vivo stability and high bioavailability, and are suitable for subcutaneous injection.
| Number | Date | Country | Kind |
|---|---|---|---|
| 201811337068.3 | Nov 2018 | CN | national |
This application is a U.S. National Phase of International PCT Application No. PCT/CN2019/117114 filed Nov. 11, 2019, which claims priority to Chinese Patent Application Serial No. 201811337068.3 filed Nov. 12, 2018, the contents of each application are incorporated herein by reference in their entirety.
| Filing Document | Filing Date | Country | Kind |
|---|---|---|---|
| PCT/CN2019/117114 | 11/11/2019 | WO | 00 |
