Patent Grant
11498972
This application is a U.S. national stage application of PCT Application No. PCT/CN2018/080315, filed Mar. 23, 2018 and claims priority to Chinese Application No. 201710185400.8, filed Mar. 25, 2017. Each of the above-cited applications is incorporated herein by reference in its entirety.
A paper copy of the Sequence Listing and a computer readable form of the Sequence Listing containing the file named “SEQLISTING.TXT”, created Nov. 21, 2019 which is 217,603 bytes in size (as measured in MICROSOFT WINDOWS® EXPLORER), are provided herein and are herein incorporated by reference. This Sequence Listing consists of SEQ ID NOs: 1-189.
The present invention relates to a novel antibody and antibody fragment that specifically binds to OX40 and to a composition comprising said antibody or antibody fragment. In addition, the present invention relates to a nucleic acid encoding the antibody or an antibody fragment thereof and a host cell comprising the same, and to a related use thereof. In addition, the present invention relates to the use of the antibody and antibody fragment for treatment and diagnosis.
OX40 (also known as CD134, TNFRSF4 and ACT35) was originally described as T cell activation markers on rat CD4 T cells (Paterson D J, Jefferies W A, Green J R, Brandon M R, Corthesy P, Puklavec M, Williams A F. Antigens of activated rat T lymphocytes including a molecule of 50,000 Mr detected only on CD4 positive T blasts. Mol Immunol. 1987; 24: 1281-1290) and subsequently shown to be upregulated in TCR recruitment (Mallett S, Fossum S, Barclay A N. Characterization of the MRC OX40 antigen of activated CD4 positive T lymphocytes—a molecule related to nerve growth factor receptor. EMBO J. 1990; 9: 1063-1068). OX40 was identified on CD4+ T cells, CD8+ T cells, NK cells, NKT cells and neutrophils (D. J. Paterson, W. A. Jefferies, J. R. Green et al., “Antigens of activated Rat T lymphocytes including a molecule of 50,000 M(r) detected only on CD4 positive T blasts,” Molecular Immunology, vol. 24, no. 12, pp. 1281-1290, 1987). OX40 signaling can promote costimulatory signals to T cells, leading to enhanced cell proliferation, survival, effector function and migration (Gramaglia I, Weinberg A D, Lemon M, Croft M. Ox-40 ligand: a potent costimulatory molecule for sustaining primary CD4 T cell responses. J Immunol. 1998; 161: 6510-6517; Gramaglia I, Jember A, Pippig S D, Weinberg A D, Killeen N, Croft M. The OX40 costimulatory receptor determines the development of CD4 memory by regulating primary clonal expansion. J Immunol. 2000; 165: 3043-3050).
OX40L, the ligand for OX40, is mainly expressed on antigen presenting cells (APCs) and its expression can be induced by CD40 and mast cell signaling, toll-like receptors (TLR), and inflammatory cytokines. In addition to APC, non-hematopoietic cells such as smooth muscle and vascular endothelial cells can also express OX40L. In transgenic mice overexpressing OX40L, T-cell activation was increased and, when immunized, these mice produced enhanced T cell responses (Murata K, Nose M, Ndhlovu L C, Sato T, Sugamura K, Ishii N. Constitutive OX40/OX40 ligand interaction induces autoimmune-like diseases. J Immunol. 2002; 169: 4628-4636, and Sato T, Ishii N, Murata K, Kikuchi K, Nakagawa S, Ndhlovu L C, Sugamura K. Consequences of OX40-OX40 ligand interactions in langerhans cell function: enhanced contact hypersensitivity responses in OX40L-transgenic mice. Eur J Immunol. 2002; 32:3326-3335). This data suggests that OX40L expression is a limiting factor for OX40 signaling in T cells.
In mice bearing tumors, the in vivo ligation of mouse OX40 (by soluble mouse OX40L-immunoglobulin fusion protein or mouse OX40L mimetic, such as anti-mouse CD134 specific antibody) enhances anti-tumor immunity, resulting in no tumor survival in the mouse models of various mouse malignant tumor cell lines such as lymphoma, melanoma, sarcoma, colon cancer, breast cancer and neuroglioma (Sugamura et al. Nature Rev Imm. 2004; 4: 420-431).
It has been suggested that the immune response of the mammal to the antigen is enhanced by the use of OX40 binding agent in combination with OX40 (WO99/42585; Weinberg, 2000). Although the literature generally refers to the OX40 binding agent, the emphasis is on the use of OX40L or a portion thereof; the anti-OX40 antibody is disclosed as an equivalent of OX40L. In fact, when the Weinberg group used the study in nonhuman primate studies, they again intentionally selected antibodies that bind OX40L binding sites and generally mimic OX40L.
Al-Shamkhani et al. (Eur J Chem. 1996; 26: 1695-1699) used an anti-OX40 antibody called OX86 that did not block OX40L binding, to explore the differential expression of OX40 on activated mouse T cells; Hirschhorn-Cymerman et al. (J Exp Med. 2009; 206: 1103-1116) used OX86 and cyclophosphamide as potential chemo-immunotherapy in the mouse model. However, OX86 is expected not to bind to human OX40, and when selecting an antibody that is effective in humans, an antibody that binds to the OX40L binding site will be selected according to Weinberg's study.
In severe combined immunodeficiency (SCID) mice, the in vivo ligation of human OX40 (by anti-human OX40-specific antibodies that interact with the OX40L binding domain on human OX40; US2009/0214560A1) enhances anti-tumor immunity, which results in tumor growth inhibition in a variety of human malignant tumor cell lines such as lymphoma, prostate cancer, colon cancer and breast cancer.
In humans, the exact mechanism of human OX40 ligation-mediated anti-tumor immune response has not been confirmed, but is thought to be mediated by OX40 transmembrane signaling pathway, which is stimulated by interaction with OX40L. This interaction is mediated by the binding of trimeric OX40L and OX40. In the current anticancer treatment, it is recommended to use trimerized OX40 ligands as a more potent drug than the anti-OX40 antibody (Morris et al. Mol Immunol. 2007; 44: 3112-3121).
In addition, a single anti-OX40 treatment does not provide sufficient anti-tumor immunogenicity in immunologically poor tumors, and it is also desirable to develop a combination of OX40 and other strategies. It has been found that regulating the combination of OX40 signaling and other signaling pathways (such as the angiogenesis pathway, PD-1 pathway) that is dysregulated in tumor cells can further enhance therapeutic efficacy.
However, there remains a need to develop a new anti-OX40 antibody that blocks the binding of OX40 to OX40L less than the anti-OX40 antibodies known in the art to better treat or delay various cancers, immune related diseases and T cell dysfunction diseases.
Applicants have surprisingly found that in order to activate T cells and to induce T cell mediated antitumor activity, an antibody or fragment thereof (e,g, antigen-binding fragment) bound to human OX40 is used, wherein the antibody or fragment thereof is capable of binding to human OX40 better while less blocking the binding of human OX40 to OX40 ligand (OX40L) and producing an enhanced immune response.
Preferably, the anti-OX40 antibody or fragment thereof of the present invention is capable of activating T cells, for example enhancing the immunostimulatory/effector function of T-effect cells and/or allowing these cells to proliferate and/or down-regulate the immunosuppressive function of T-regulated cells. More preferably, the antibody is capable of eliciting antibody-dependent cell-mediated cytotoxicity (ADCC). In some embodiments, the OX40 antibody of the present invention can be used to treat or delay various cancers, immune-related diseases and T-cell dysfunction disorders.
The invention thus provides an antibody or fragment thereof (preferably an antigen-binding fragment) that binds human OX40 or cynomolgus monkey OX40, wherein the antibody or fragment thereof less blocks binding of human or cynomolgus OX40 to its ligand OX40L. In some embodiments, the antibody or the fragment thereof of the present invention can bind human OX40, while less blocks binding of human OX40 to its ligand (OX40L)(for example, in comparison to the known OX40 antibody or OX40L), and produce enhanced immune response.
Preferably, the blocking of the antibody or fragment thereof of the present invention on the binding between human or cynomolgus OX40 and its ligand OX40L is lower than that of OX40L ligand or other anti-OX40 antibody known in the art (e.g., pogalizumab). More preferably, the anti-OX40 antibody or the fragment thereof maintain its strong binding to human or cynomolgus OX40 (e.g., comparable to the known anti-OX40 antibody, e.g., pogalizumab), while less block the binding between human or cynomolgus OX40 and its ligand OX40L (e.g., less than the blocking of OX40L or less than the blocking of pogalizumab).
In some embodiments, the antibody or fragment thereof of the present invention binds to human OX40 or cynomolgus monkey OX40. In some preferable embodiments, the antibody or fragment thereof of the present invention does not bind to murine OX40 or bind to murine OX40 less than binding to human or cynomolgus OX40, the murine OX40 is e.g., rat OX40 or mouse OX40.
In some embodiments, the anti-OX40 antibody of the present invention has agonist activity.
In some embodiments, the anti-OX40 antibody of the present invention or a fragment thereof binds to human OX40 or cynomolgus monkey OX40 with a KD of less than about 200 nM, preferably less than or equal to about 100 nM, about 50 nM, about 40 nM, about 30 nM, about 20 nM, about 10 nM, more preferably less than or equal to about 9 nM, more preferably less than or equal to about 8 nM, more preferably less than or equal to about 7 nM, 6 nM, 5 nM, 4 nM, 3 nM or 2 nM, and most preferably, the KD is less than or equal to about 1 nM or 0.8 nM or 0.4 nM or 0.3 nM or 0.2 nM or 0.1 nM. In some embodiments, the antibody binding affinity is determined using a Bio-light interferometry (e.g., Fortebio affinity measurement) or an MSD assay.
In some embodiments, the binding to human OX40 or cynomolgus monkey OX40 by the antibodies of the present invention or the fragment thereof is determined using the flow cytometry (e.g., FACS) assay. In some embodiments, the binding to human OX40 or cynomolgus OX40 in a cell has an EC50 of less than or equal to about 10 nM, 9 nm or 8 nm. In some embodiments, the binding to human OX40 or cynomolgus monkey OX40 has an EC50 of less than or equal to about 7 nM or about 6 nM or about 5 nm or about 4 nm or about 3 nM. In some embodiments, in an assay performed by flow cytometry, the antibodies or the antibody fragments bind to OX40 expressed on the cells with a MFI>1000× fold difference, preferably >1100 fold difference, 1200 fold difference, 1300 fold difference, 1400 fold difference, 1500 fold difference, 1600 fold difference, 1700 fold difference, 1800 fold difference, 1900 fold difference, 2000 fold difference, 2100 fold difference, 2200 fold difference, 2300 fold difference, 2400 fold difference or 2500 fold difference compared with corresponding control cells that do not express OX40.
In another aspect, the present invention provides an anti-OX40 antibody or fragment thereof having agonist activity capable of activating T cells (e.g., CD4+ T cells). Therefore, in some embodiments, the anti-OX40 antibody or fragment thereof can activate T cells.
In some embodiments, the anti-OX40 antibody or fragment thereof of the present invention enhances CD4+ effector T cell function, for example by increasing CD4+ effector T cell proliferation and/or increasing gamma-interferon production of CD4+ effector T cells (e.g., compared to the proliferation and/or cytokine production prior to the treatment of the anti-OX40 antibody or fragment thereof of the present invention, or compared to the proliferation and/or cytokine production of CD4+ effector T cell treated by the control antibody (e.g., IgG antibody). In some embodiments, the cytokine is a γ-interferon, such as IFNg or an interleukin, such as IL-2.
In some embodiments, the anti-OX40 antibody or fragment thereof of the present invention increases the number of intratumoral (invasive) CD4+ effector T cells (e.g., the total number of CD4+ effector T cells, or the percentage of CD4+ cells in CD45+ cells, for example), for example, compared to the number of intratumoral (invasive) CD4+ T cells prior to treatment with the anti-OX40 antibody or fragment thereof of the present invention (or after treatment with a control antibody (e.g., an IgG antibody). In some embodiments, the anti-OX40 antibody or fragment thereof of the present invention increases the number of intratumoral (invasive) CD4+ effector T cells expressing γ-interferon (e.g., the total number of CD4+ cells expressing γ-interferon, or a percentage of CD4+ cells expressing γ-interferon in total CD4+ cells), for example, compared to the number of intratumoral (invasive) CD4+ effector T cells expressing γ-interferon prior to treatment with the anti-OX40 antibody or fragment thereof of the present invention (or after treatment with a control antibody (e.g., an IgG antibody).
In some embodiments, the agonist activity of the anti-OX40 antibody is assessed by the level of cytokines released after T cell activation. Accordingly, the present invention provides an anti-OX40 antibody or fragment thereof that can enhance cytokine production of CD4+ T cells as compared to cytokine production of CD4+ T cells treated with IgG control. In some embodiments, the cytokine is an inflammatory cytokine, such as γ-interferon (e.g., IFNg) or an interleukin (e.g., IL-2).
Preferably, the anti-OX40 antibody or fragment thereof of the present invention is capable of increasing the level of IL-2 secreted by CD4+ T cells up to about 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 20, 30, 40, 50, 60, 70, 80, 90, 100, 110, 120, 130, 140, 150, 160 fold or higher as compared to the corresponding control IgG. In some embodiments, the anti-OX40 antibody or fragment thereof of the present invention is capable of increasing the level of IL-2 secreted by CD4+ T cells up to about 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27 fold or higher as compared to the corresponding control IgG antibody. In some embodiments, an anti-OX40 antibody or fragment thereof of the invention is capable of increasing IFNg levels secreted by CD4+ T cells by a factor of 1, 2, 3 or more compared to a corresponding control IgG antibody. In some embodiments, the cytokine secretion levels of T cells are determined by ELISA.
In some embodiments, the agonist activity of the anti-OX40 antibody is assessed by OX40 signaling (e.g., monitoring of NF K B downstream signaling). In some embodiments, the anti-OX40 antibody or fragment thereof of the present invention enhances OX40 signal transduction in target cells expressing OX40. In some embodiments, OX40 signal transduction is detected by monitoring NFkB downstream signaling.
Accordingly, the present invention provides an anti-OX40 antibody or fragment thereof that enhances NFKB-mediated transcriptional activity levels as compared to an control IgG antibody. Preferably, the anti-OX40 antibody or fragment thereof of the present invention is capable of increasing the level of NFκB-mediated transcriptional activity by about 1, 2, 3, 4, 5, 6, 7 fold or higher as compared to the corresponding control IgG antibody.
In some embodiments, the anti-OX40 antibody or fragment thereof of the present invention increases the number of intratumoral (invasive) CD8+ effector T cells (e.g., the total number of CD8+ effector T cells, or the percentage of CD8+ in CD45+ cells, for example), for example, compared to the number of intratumoral (invasive) CD8+ effector T cells prior to treatment with the anti-OX40 antibody or fragment thereof of the present invention (or after treatment with a control antibody (e.g., an IgG antibody). In some embodiments, the anti-OX40 antibody or fragment thereof of the present invention increases the number of intratumoral (invasive) CD8+ effector T cells expressing γ-interferon (e.g., the percentage of CD8+ cells expressing γ-interferon in total CD8+ cells), for example, compared to the number of intratumoral (invasive) CD8+T effector cells expressing γ-interferon prior to treatment with the anti-OX40 antibody or fragment thereof of the present invention (or after treatment with a control antibody e.g., an IgG antibody).
In some embodiments, the anti-OX40 antibody or fragment thereof of the present invention enhances memory T cell function, for example by increasing memory T cell proliferation and/or increasing cytokine production in memory cells. In some embodiments, the cytokine is γ-interferon (e.g., IFNg) or interleukin (e.g., IL-2).
In some preferred embodiments, the anti-OX40 antibody or fragment thereof of the present invention is capable of eliciting antibody-dependent cell-mediated cytotoxicity (ADCC). In some embodiments, the anti-OX40 antibody or fragment thereof of the present invention binds to human effector cells, e.g., binds to FcγR (e.g., activated FcγR) expressed in human effector cells. In some embodiments, the human effector cells perform (are capable of performing) the ADCC effector function.
In some embodiments, the function of the anti-OX40 antibody or fragment thereof of the present invention requires antibody cross-linking. In some embodiments, the functions of the anti-OX40 antibody or fragment thereof of the present invention are as one or more of the following: increasing CD4+ effector T cell proliferation and/or cytokine production, enhancing CD4+ memory T cell proliferation and/or cytokines generation, and/or reduce the cells by ADCC. In some embodiments, antibody cross-linking is determined by providing anti-human OX40 agonistic antibodies that adhere to a solid surface, such as a cell culture plate. In some embodiments, antibody cross-linking is determined by introducing a mutation (e.g., amino acid mutation) into the IgG Fc portion of the antibody and testing the function of the mutant antibody. In some embodiments, antibody cross-linking is achieved by FcgRIIb. In some embodiments, the anti-OX40 antibody or the fragment thereof of the present invention can achieve its function without antibody cross-linking.
In some embodiments, the anti-OX40 antibody or the fragment thereof of the present invention can achieve its function in absence of FcgRIIb.
In some embodiments, the anti-OX40 antibody or the fragment thereof of the present invention have better anti-tumor activity. For example, compared to control IgG or known anti-OX40 antibody, the anti-OX40 antibody or the fragment thereof of the present invention can reduce the tumor volume in a subject, preferably do not influence the body weight of the subject in the meantime.
The IgG antibody as a control described herein includes an IgG1 antibody, or an IgG4 antibody or an IgG2 antibody, for example, an IgG1, IgG2 or IgG4 antibody having a light chain and a heavy chain as shown in Table 7.
In a preferred embodiment, the invention provides an anti-OX40 antibody or fragment thereof having one or more of the properties of an anti-OX40 antibody described above.
In some embodiments, an anti-OX40 antibody or antigen-binding fragment thereof of the invention comprises a heavy chain variable region (HCVR), wherein the HCVR comprises
(i) three complementarity determining regions (CDRs) HCDR1, HCDR2 and HCDR3 contained in the HCVR of any one of the antibodies listed in Table B, or
(ii) a sequence comprising at least one and no more than 10 or 5 amino acid changes (preferably amino acid substitutions, preferably conservative substitutions) in totalin the three CDR regions relative to the sequence of (i).
In some embodiments, an anti-OX40 antibody or antigen-binding fragment thereof of the invention comprises a light chain variable region (LCVR), wherein the LCVR comprises:
(i) the LCDR1, LCDR2 and LCDR3 sequences contained in the LCVR of anyone of the antibodies listed in Table B; or
(ii) a sequence comprising at least one and no more than 10 or 5 amino acid changes (preferably amino acid substitutions, preferably conservative substitutions) in totalin the three CDR regions relative to the sequence of (i).
In some embodiments, an anti-OX40 antibody or antigen-binding fragment thereof of the invention comprises a heavy chain variable region HCVR and a light chain variable region LCVR, wherein
(a) the HCVR contains
(i) three complementarity determining regions (CDRs) HCDR1, HCDR2 and HCDR3 contained in the HCVR of anyone of the antibodies listed in Table B, or
(ii) a sequence comprising at least one and no more than 10 or 5 amino acid changes (preferably amino acid substitutions, preferably conservative substitutions) in total in said three CDR regions relative to the sequence of (i); and/or
(b) The LCVR contains:
(i) the LCDR1, LCDR2 and LCDR3 sequences contained in the LCVR of anyone of the antibodies listed in Table B; or
(ii) a sequence comprising at least one and no more than 10 or 5 amino acid changes (preferably amino acid substitutions, preferably conservative substitutions) in total in the three CDR regions relative to the sequence of (i).
In a preferred embodiment, the HCVR comprises an amino acid sequence selected from the group consisting of SEQ ID NO: 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 118, 119 or 120, or consists of the amino acid sequence.
In a preferred embodiment, the LCVR comprises or consists of an amino acid sequence selected from the group consisting of SEQ ID NO: 130, 131, 132, 133, 134, 135, 136, 137 or 138.
In some embodiments, an anti-OX40 antibody or antigen-binding fragment thereof of the invention comprises a heavy chain variable region (HCVR) and/or a light chain variable region (LCVR), wherein
(i) the HCVR comprises a complementarity determining region (CDR) HCDR1, HCDR2 and HCDR3, wherein HCDR1 comprises or consists of an amino acid sequence selected from the group consisting of SEQ ID NO: 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15 and 16, or HCDR1 comprises an amino acid sequence having one, two or three changes (preferably amino acid substitutions, preferably conservative substitutions) compared to the amino acid sequence selected from the group consisting of SEQ ID NO: 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15 and 16; HCDR2 comprises or consists of an amino acid sequence selected from the group consisting of SEQ ID NO: 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32 and 33, or HCDR2 comprises an amino acid sequence having one, two or three changes (preferably amino acid substitutions, preferably conservative substitutions) compared to the amino acid sequence selected from the group consisting of SEQ ID NO: 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32 and 33; HCDR3 comprises or consists of an amino acid sequence selected from the group consisting of SEQ ID NO: 34, 35, 36, 37, 38, 39 and 40, or HCDR3 comprises an amino acid sequence having one, two or three changes (preferably amino acid substitutions, preferably conservative substitutions) compared to the amino acid sequence selected from the group consisting of SEQ ID NO: 34, 35, 36, 37, 38, 39 and 40;
and/or
(ii) wherein the LCVR comprises complementarity determining regions (CDRs) LCDR1, LCDR2 and LCDR3, wherein LCDR1 comprises or consists of an amino acid sequence selected from the group consisting of SEQ ID NOs: 41, 42, 43, 44, 45 and 46, or LCDR1 comprises an amino acid sequence having one, two or three changes (preferably amino acid substitutions, preferably conservative substitutions) compared to an amino acid sequence selected from the group consisting of SEQ ID NO: 41, 42, 43, 44, 45 and 46; LCDR2 comprises or consists of an amino acid sequence selected from the group consisting of SEQ ID NOS: 47, 48, 49, 50, 51, and 52, or LCDR2 comprises an amino acid sequence having one, two or three changes (preferably amino acid substitutions, preferably conservative substitutions) compared to an amino acid sequence selected from the group consisting of SEQ ID NO: 47, 48, 49, 50, 51, and 52; LCDR3 comprises or consists of the amino acid sequence selected from the group consisting of SEQ ID NOs: 53, 54, 55, 56, 57, 58, 59, 60 and 61, or LCDR3 comprises an amino acid sequence having one, two or three changes (preferably amino acid substitutions, preferably conservative substitutions) compared to an amino acid sequence selected from the group consisting of SEQ ID NOs: 53, 54, 55, 56, 57, 58, 59, 60 and 61.
In a preferred embodiment, the invention provides an anti-OX40 antibody or antigen-binding fragment thereof comprising a heavy chain variable region (HCVR) and a light chain variable region (LCVR), wherein
(a) the HCVR contains
(i) a combination of HCDR1, HCDR2 and HCDR3 as shown in Table A; or
(ii) a variant of the HCDR combination of (i) comprising at least one and no more than 10 or 5 amino acid changes (preferably amino acid substitutions, preferably conservative substitutions) in total in said three CDR regions;
and/or
(b) the LCVR contains
(i) a combination of LCDR1, LCDR2 and LCDR3 as shown in Table A; or
(ii) a variant of the LCDR combination of (i), said variant comprising at least one and no more than 10 or 5 amino acid changes (preferably amino acid substitutions, preferably conservative substitutions) in total in said three CDR regions.
In a preferred embodiment, the present invention provides anti-OX40 antibody or antigen-binding fragment thereof comprising a heavy chain variable region (HCVR) and a light chain variable region (LCVR), wherein the HCVR comprises a complementarity determining region (CDR) HCDR1, HCDR2 and HCDR3 and the LCVR comprises (CDR) LCDR1, LCDR2 and LCDR3, wherein the combinations of the HCDR1, HCDR2, HCDR3, LCDR1, LCDR2 and LCDR3 comprised in said antibody or its antigen-binding fragment are represented as follows (Table A):
In some embodiments, an anti-OX40 antibody or antigen-binding fragment thereof of the invention comprises a heavy chain variable region HCVR and/or a light chain variable region LCVR, wherein
(a) heavy chain variable region HCVR
(i) comprising or consisting of an amino acid sequence having at least 90%, 91%, 92%, 93%, 94%, 95%, 96%, 97%, 98% or 99% identity with the amino acid sequence selected from the group consisting of SEQ ID NO: 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 118, 119 and 120; or
(ii) comprising or consisting of an amino acid sequence selected from the group consisting of SEQ ID NOs: 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 118, 119 and 120; or
(iii) comprising an amino acid sequence having one or more (preferably no more than 10, more preferably no more than 5) amino acid changes (preferably amino acid substitutions, more preferably conservative substitutions) compared to an amino acid sequence selected from the group consisting of SEQ ID NOs: 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 118, 119 and 120, preferably, said amino acid changes do not occur in the CDR regions;
and/or
(b) light chain variable region LCVR
(i) comprising or consisting of an amino acid sequence having at least 90%, 91%, 92%, 93%, 94%, 95%, 96%, 97%, 98% or 99% identity with the amino acid sequence selected from the group consisting of SEQ ID NO: 130, 131, 132, 133, 134, 135, 136, 137 and 138;
(ii) comprising or consisting of an amino acid sequence selected from the group consisting of SEQ ID NOs: 130, 131, 132, 133, 134, 135, 136, 137 and 138; or
(iii) comprising an amino acid sequence having one or more (preferably no more than 10, more preferably no more than 5) amino acid changes (preferably amino acid substitutions, more preferably conservative substitutions) compared to an amino acid sequence selected from the group consisting of SEQ ID NOs: 130, 131, 132, 133, 134, 135, 136, 137 and 138, preferably, said amino acid changes do not occur in the CDR regions.
In a preferred embodiment, the present invention provides anti-OX40 antibody or antigen-binding fragment thereof comprising a heavy chain variable region (HCVR) and a light chain variable region (LCVR), wherein the combinations of the heavy chain variable region HCVR and light chain variable region LCVR comprised in said antibody or its antigen-binding fragment are represented as follows (Table B):
In some embodiments, the anti-OX40 antibody or antigen-binding fragment thereof of the present invention comprises a heavy chain and/or light chain, wherein
(a) heavy chain
(i) comprising or consisting of an amino acid sequence having at least 90%, 91%, 92%, 93%, 94%, 95%, 96%, 97%, 98% or 99% identity with the amino acid sequence selected from the group consisting of SEQ ID NO: 189, 139, 140, 141, 142, 143, 144, 145, 146, 147, 148, 149, 150, 151, 152, 153, 154, 155, 156, 157, 158, 159, 160, 161, 162, 163, 164, 165, 166 or 167;
(ii) comprising or consisting of an amino acid sequence selected from the group consisting of SEQ ID NOs: 189, 139, 140, 141, 142, 143, 144, 145, 146, 147, 148, 149, 150, 151, 152, 153, 154, 155, 156, 157, 158, 159, 160, 161, 162, 163, 164, 165, 166 or 167; or
(iii) comprising an amino acid sequence having one or more (preferably no more than 20 or 10, more preferably no more than 5) amino acid changes (preferably amino acid substitutions, more preferably conservative substitutions) compared to an amino acid sequence selected from the group consisting of SEQ ID NOs: 189, 139, 140, 141, 142, 143, 144, 145, 146, 147, 148, 149, 150, 151, 152, 153, 154, 155, 156, 157, 158, 159, 160, 161, 162, 163, 164, 165, 166 or 167, preferably, said amino acid changes do not occur in the CDR regions, more preferably, said amino acid changes do not occur in the heavy chain variable region;
and/or
(b) light chain
(i) comprising or consisting of an amino acid sequence having at least 90%, 91%, 92%, 93%, 94%, 95%, 96%, 97%, 98% or 99% identity with the amino acid sequence selected from the group consisting of SEQ ID NO: 168, 169, 170, 171, 172, 173, 174, 175 or 176;
(ii) comprising or consisting of an amino acid sequence selected from the group consisting of SEQ ID NOs: 168, 169, 170, 171, 172, 173, 174, 175 or 176; or
(iii) comprising an amino acid sequence having one or more (preferably no more than 20 or 10, more preferably no more than 5) amino acid changes (preferably amino acid substitutions, more preferably conservative substitutions) compared to an amino acid sequence selected from the group consisting of SEQ ID NOs: 168, 169, 170, 171, 172, 173, 174, 175 or 176, preferably, said amino acid changes do not occur in the CDR regions, more preferably, said amino acid changes do not occur in the light chain variable region.
In a preferred embodiment, the anti-OX40 antibody or antigen-binding fragment thereof of the present invention comprises a heavy and a light chain, wherein the combinations of the heavy chain and light chain comprised in said antibody or its antigen-binding fragment are as follows (Table C):
In some embodiments, the heavy chain of the anti-OX40 antibody or fragment thereof of the present invention further comprises a signal peptide sequence, such as
In one embodiment of the invention, the amino acid changes described herein include substitutions, insertions or deletions of amino acids. Preferably, the amino acid changes described herein are amino acid substitutions, preferably conservative substitutions.
In some embodiments, an antibody of the invention is capable of binding OX40 and less blocking the binding of OX40 to its ligand OX40L. In some embodiments, an anti-OX40 antibody or fragment thereof of the invention has a functional Fc region. In some embodiments, the effector function of the functional Fc region is ADCC. In some embodiments, the Fc region is the Fc region of human IgG1 or the Fc region of human IgG2.
In some embodiments, an anti-OX40 antibody or fragment thereof of the invention has one or more of the following characteristics:
(i) showing the same or similar binding affinity and/or specificity as anyone of the antibodies listed in Table 5 for OX40 (particularly human OX40);
(ii) inhibiting (e.g, competitive inhibiting) the binding of anyone of the antibodies listed in Table 5 to OX40 (particularly human OX40);
(iii) binding to an epitope that is the same or overlaps with that bound by anyone of the antibodies shown in Table 5;
(iv) competing with anyone of the antibodies shown in Table 5 to bind OX40 (particularly human OX40);
(v) having one or more of the biological properties of anyone of the antibodies listed in Table 5.
In some embodiments, the anti-OX40 antibody of the present invention is an antibody in the form of IgG1 or antibody in IgG2 form or antibody in IgG4 form. In some embodiments, the anti-OX40 antibody is a monoclonal antibody. In some embodiments, the anti-OX40 antibody is humanized. In some embodiments, the anti-OX40 antibody is a human antibody. In some embodiments, at least a portion of the anti-OX40 antibody's framework sequence is a human consensus framework sequence. In one embodiment, the anti-OX40 antibody of the present invention also encompasses an antibody fragment thereof, preferably an antibody fragment selected from the group consisting of Fab, Fab′, Fab′-SH, Fv, single chain antibody (e.g., scFv) or (Fab′)2, single domain antibody, diabodies (dAb) or linear antibody.
In certain embodiments, the anti-OX40 antibody molecule is in the form of a bispecific or multispecific antibody molecule. In one embodiment, the bispecific antibody molecule has a first binding specificity for OX40 and a second binding specificity for PD-1, TIM-3, CEACAM (eg, CEACAM-1 and/or CEACAM-5), PD-L1 or PD-L2. In one embodiment, the bispecific antibody molecule binds to OX40 and PD-1. In another embodiment, the bispecific antibody molecule binds to OX40 and PD-L1. In yet another embodiment, the bispecific antibody molecule binds to OX40 and PD-L2. The multispecific antibody molecule can have any combination of binding specificities for the aforementioned molecules. The multispecific antibody molecule can be, for example, a trispecific antibody molecule comprising a first binding specificity for OX40 and a second and third binding specificity for one or more of the following molecules: PD-1, TIM-3, CEACAM (e.g., CEACAM-1 or CEACAM-5), PD-L1 or PD-L2.
In one aspect, the present invention provides nucleic acids encoding any of the above anti-OX40 antibodies or fragments thereof. In one embodiment, a vector comprising said nucleic acid is provided. In one embodiment, the vector is an expression vector. In one embodiment, a host cell comprising said vector is provided. In one embodiment, the host cell is eukaryotic. In another embodiment, the host cell is selected from yeast cells, mammalian cells (e.g., CHO cells or 293 cells), or other cells suitable for the preparation of antibodies or antigen-binding fragments thereof. In another embodiment, the host cell is prokaryotic.
In one embodiment, the present invention provides a method of preparing an anti-OX40 antibody or fragment thereof (preferably an antigen-binding fragment), wherein the method comprises culturing the host cell under conditions suitable for expression of a nucleic acid encoding the antibody or fragment thereof (preferably an antigen-binding fragment), and optionally isolating the antibody or fragment thereof (preferably an antigen-binding fragment). In an embodiment, the method further comprises recovering an anti-OX40 antibody or fragment thereof (preferably an antigen-binding fragment) from the host cell.
In some embodiments, the invention provides an immunoconjugate comprising any of the anti-OX40 antibodies provided herein and other agents, such as a cytotoxic agent. In some embodiments, the immunoconjugate is used to treat cancer, preferably lung cancer (e.g., non-small cell lung cancer), liver cancer, gastric cancer, colon cancer, and the like.
In some embodiments, the present invention provides a composition comprising any of the anti-OX40 antibodies or fragments thereof, preferably an antigen-binding fragment thereof, or immunoconjugate as described herein, preferably the composition is a pharmaceutical composition. In one embodiment, the composition further comprises a pharmaceutically acceptable adjuvants. In one embodiment, a composition, e.g., a pharmaceutical composition, comprises a combination of an anti-OX40 antibody or a fragment thereof, or an immunoconjugate thereof, of the invention, and one or more other therapeutic agents (e.g, a chemotherapeutic agent, an anti-angiogenic agent, an anti-PD-1 antibody, an anti-PD-L1 antibody, or an anti-PD-L2 antibody). In some embodiments, the pharmaceutical composition is used for the treatment of cancer, preferably lung cancer (e.g., non-small cell lung cancer), liver cancer, gastric cancer, colon cancer, and the like.
In one aspect, the present invention relates to a method of activating T cells or inducing T cell mediated antitumor activity or enhancing body immune response in a subject, which comprises administering to said subject an effective amount of any of the anti-OX40 antibodies or fragments thereof, immunoconjugate or pharmaceutical composition as described herein. The present invention also relates to the use of any anti-OX40 antibodies or a fragment thereof described herein for the preparation of a composition or medicament for activating T cells or inducing T cell mediated antitumor activity or enhancing the body immune response of in a subject.
In another aspect, the present invention relates to a method of treating cancer in a subject comprising administering to said subject an effective amount of any anti-OX40 antibody or fragment thereof, immunoconjugate or pharmaceutical composition as described herein. In one embodiment, the cancer is lung cancer (e.g., non-small cell lung cancer), liver cancer, gastric cancer, colon cancer, and the like. In another aspect, the invention also relates to the use of any anti-OX40 antibodies or a fragment thereof described herein for the manufacture of a medicament for the treatment of cancer in a subject. In one embodiment, the cancer is lung cancer (e.g., non-small cell lung cancer), liver cancer, gastric cancer, colon cancer, and the like.
In some embodiments, the methods described herein further comprise administering to the subject one or more therapies (e.g., a therapeutic manner and/or other therapeutic agent). In some embodiments, the therapeutic manner includes surgery and/or radiation therapy. In some embodiments, the other therapeutic agent is selected from the group consisting of a chemotherapeutic agent, a PD-1 axis binding antagonist (e.g., an anti-PD-1 antibody or an anti-PD-L1 antibody or an anti-PD-L2 antibody), or an anti-angiogenic agent (e.g., bevacizumab).
In another aspect, the invention relates to use of the anti-OX40 antibodies or fragments thereof described herein in combination with a PD-1 axis binding antagonist (e.g., an anti-PD-1 antibody or an anti-PD-L1 antibody or an anti-PD-L2 antibody) in the manufacture of a medicament for treating cancer in a subject. In one embodiment, the cancer is lung cancer (eg, non-small cell lung cancer), liver cancer, gastric cancer, colon cancer, and the like.
In some embodiments, the subject or individual is a mammal, preferably a human.
In one aspect, the present invention relates to a method of detecting OX40 in a sample comprising (a) contacting a sample with any anti-OX40 antibody or fragment thereof described herein; and (b) detecting the formation of a complex between anti-OX40 antibody or fragment thereof and OX40. In one embodiment, the anti-OX40 antibody is detectably labeled.
In some embodiments, the present invention relates to a kit or a manufacture articles comprising any of the anti-OX40 antibodies or fragments thereof described herein. In some embodiments, the kit or product comprises an anti-OX40 antibody or fragment thereof as described herein and optionally a pharmaceutically acceptable adjuvants, and optionally one or more additional therapeutic agent (such as a chemotherapeutic agent, a PD-1 axis binding antagonist (e.g., an anti-PD-1 antibody or an anti-PD-L1 antibody or an anti-PD-L2 antibody), or an anti-angiogenic agent (e.g., bevacizumab). In some embodiments, the kit or manufacture article further comprises instructions for administering a medicament for the treatment of cancer.
The invention also encompasses any combination of any of the embodiments described herein. Any of the embodiments described herein, or any combination thereof, are applicable to any and all of the anti-OX40 antibodies or fragments of the invention as described herein and methods and uses thereof.
Before the present invention is described in detail below, it is to be understood that the invention is not limited to the particular methodology, solutions, and reagents described herein, as these may vary. It is also understood that the terminology used herein is for the purpose of describing the particular embodiments and is not intended to limit the scope of the invention, which will only be restricted by the appended claims. All technical and scientific terms used herein have the same meaning as commonly understood by those skilled in the art to which this invention belongs, unless otherwise defined.
For the purpose of interpreting the specification, the following definitions will be used, and the terms used in the singular may also include the plural, vice versa, if appropriate. It is understood that the terminology used herein is for the purpose of describing particular embodiments and is not intended to be restrictive.
The term “about” when used in connection with a numerical value is meant to encompass numerical values within the range between the lower limit of 5% less than the specified numerical value and the upper limit of 5% greater than the specified numerical value.
“Affinity” refers to the strength of the sum of all non-covalent interactions between a single binding site of a molecule (e.g., an antibody) and its binding partner (e.g., an antigen). As used herein, “binding affinity” refers to the intrinsic binding affinity that reflects a 1:1 interaction between members of a binding pair (e.g., an antibody and an antigen), unless otherwise indicated. The affinity of molecule X for its partner Y is generally expressed by the equilibrium dissociation constant (KD). Affinity can be measured by conventional methods known in the art, including those known in the art and described herein.
The term “anti-OX40 antibody”, “anti-OX40”, “OX40 antibody” or “antibody binding to OX40” as used herein refers to an antibody which is capable of binding to (human or Cynomolgus)OX40 protein or a fragment thereof with sufficient affinity such that the antibody can be used as diagnostic and/or therapeutic agent targeting (human or Cynomolgus)OX40. In one embodiment, the anti-OX40 antibody binds to non-(human or Cynomolgus)OX40 protein to an extent lesser than about 10%, about 20%, about 30%, about 40%, about 50%, about 60%, about 70%, about 80% or about 90% or above of the binding of the antibody to (human or Cynomolgus)OX40, as measured, for example, by radioimmunoassay (MA) or Bio-light interferometry or MSD assay. In some embodiments, the anti-OX40 antibody binds to human or Cynomolgus OX40 with an equilibrium dissociation constant (KD) of ≤200 nM, ≤100 nM, ≤10 nM or ≤1 nM (e.g., below 10−7M, e.g., 10−7M to 10−1° M, e.g., 10−8M to 10−9M).
As used herein, “monoclonal antibody” or “mAb” refers to a single copy or cloned antibody derived from, for example, a eukaryotic, a prokaryotic, or a phage clone, while does not refer to a method of producing the same. Monoclonal antibodies or antigen-binding fragments thereof can be produced, for example, by hybridoma technology, recombinant technique, phage display technique, synthetic technique such as CDR grafting, or a combination of such or other techniques known in the art.
“Native antibodies” refer to naturally occurring immunoglobulin molecules with varying structures. For example, native IgG antibodies are heterotetrameric glycoproteins of about 150,000 daltons, composed of two identical light chains and two identical heavy chains that are disulfide-bonded. From N- to C-terminus, each heavy chain has a variable region (VH), also called a variable heavy domain or a heavy chain variable domain, followed by three constant domains (CH1, CH2, and CH3). Similarly, from N- to C-terminus, each light chain has a variable region (VL), also called a variable light domain or a light chain variable domain, followed by a constant light (CL) domain. The light chain of an antibody may be assigned to one of two types, called kappa (κ) and lambda (λ), based on the amino acid sequence of its constant domain. A “native sequence Fc region” comprises an amino acid sequence identical to the amino acid sequence of an Fc region found in nature. Native sequence human Fc regions include a native sequence human IgG1 Fc region (non-A and A allotypes); native sequence human IgG2 Fc region; native sequence human IgG3 Fc region; and native sequence human IgG4 Fc region as well as naturally occurring variants thereof.
An “antibody fragment” refers to a molecule other than an intact antibody that comprises a portion of an intact antibody that binds the antigen to which the intact antibody binds. Examples of antibody fragments include but are not limited to Fv, Fab, Fab′, Fab′-SH, F(ab′)2; diabodies; linear antibodies; single-chain antibody molecules (e.g. scFv); single domain antibody; and multispecific antibodies formed from antibody fragments.
As used herein, the term “epitope” refers to a portion of an antigen (e.g., OX40) that specifically interacts with an antibody molecule. This portion (referred to herein as an epitope determinant) typically comprises an element such as an amino acid side chain or a sugar side chain or a component thereof. Epitope determinants can be defined according to methods known in the art or disclosed herein (e.g., by crystallography or by hydrogen-deuterium exchange). At least one or some portion of the antibody molecule that specifically interacts with an epitope determinant is generally located within the CDR. Typically, epitopes have specific three dimensional structural characteristics. Typically, epitopes have specific charge characteristics. Some epitopes are linear epitopes, while others are conformational epitopes.
An “antibody that binds to the same or overlapping epitope” as a reference antibody refers to an antibody that blocks binding of the reference antibody to its antigen in a competition assay by 50% or more, and conversely, the reference antibody blocks binding of the antibody to its antigen in a competition assay by 50% or more. An exemplary competition assay is provided herein.
An antibody that competes with a reference antibody for binding to its antigen refers to an antibody that blocks 50%, 60%, 70%, 80%, 90% or 95% or more of the binding of the reference antibody to its antigen in a competition assay. In other words, the reference antibody blocks 50%, 60%, 70%, 80%, 90% or 95% or more of the binding of the antibody to its antigen in a competition assay. Numerous types of competitive binding assays can be used to determine whether an antigen binding protein competes with another assay such as solid phase direct or indirect radioimmunoassay (MA), solid phase direct or indirect enzyme immunoassay (EIA), Sandwich competition assays (see, e.g., Stahli et al, 1983, Methods in Enzymology 9: 242-253).
An antibody that inhibits (e.g., competitively inhibits) binding of a reference antibody to its antigen refers to an antibody that inhibits binding of 50%, 60%, 70%, 80%, 90%, or 95% or more of the reference antibody to its antigen. Conversely, the reference antibody inhibits binding of the antibody to its antigen by 50%, 60%, 70%, 80%, 90% or 95% or more. The binding of an antibody to its antigen can be measured by affinity (eg, equilibrium dissociation constant). Methods for determining affinity are known in the art.
An antibody that exhibits the same or similar binding affinity and/or specificity as a reference antibody refers to an antibody that has at least 50%, 60%, 70%, 80%, 90% or 95% or more of the binding affinity and/or specificity of the reference antibody. This can be determined by any method known in the art for determining binding affinity and/or specificity.
There are five major classes of antibodies known in the art: IgA, IgD, IgE, IgG and IgM, and several of these antibodies can be further divided into subclasses (isotypes), for example, IgG1, IgG2, IgG3, IgG4, IgA1 and IgA2. The heavy chain constant domains corresponding to different classes of immunoglobulins are referred to as α, δ, ε, γ, and μ, respectively. A person skilled in the art can select and obtain the antibody in an appropriate class of the present invention according to the practical desire.
“Antibody in IgG form” refers to the IgG form to which the heavy chain constant region of an antibody belongs. The heavy chain constant regions of all antibodies of the same type are identical, and the heavy chain constant regions differ between different types of antibodies. For example, an antibody in the IgG1 form refers to an Ig domain whose heavy chain constant region Ig domain is IgG1.
The term “dysfunction” in the context of immune dysfunction, refers to a state of reduced immune responsiveness to antigenic stimulation. The term “dysfunctional”, as used herein, also includes refractory or unresponsive to antigen recognition, specifically, impaired capacity to translate antigen recognition into downstream T-cell effector functions, such as proliferation, cytokine production (e.g., gamma interferon) and/or target cell killing.
The expression “lower blocking of human OX40 binding to OX40 ligand/OX40L” as used herein means that the antibody of the present invention block the binding of OX40 to OX40L with less extent, compared to the known OX40 antibody (e.g., pogalizumab) or OX40L. In some embodiments, the extent of binding of OX40 to OX40L is reduced less in the presence of an anti-OX40 antibody of the invention compared to the extent of binding of OX40 to OX40L in the presence of a known OX40 antibody (e.g., pogalizumab) or OX40L. In some embodiments, the reduction in the extent of binding of OX40 to OX40L in the presence of an anti-OX40 antibody of the invention is less than about 50%, 40%, 30%, 20%, 10% or less compared to the extent of binding of OX40 to OX40L in the presence of a negative control (e.g., an IgG antibody). In some embodiments, the extent of binding of OX40 to OX40L is determined by a luciferase reporter gene. In some embodiments, the extent of binding of OX40 to OX40L is determined by flow cytometry.
“Activating T cell” means to induce, cause or stimulate an effector or memory T cell to have a renewed, sustained or amplified biological function. Examples of enhancing T-cell function include: increased secretion of γ-interferon (e.g., IFNg) or interleukin (e.g., IL-2) from CD8+ effector T cells, increased secretion of γ-interferon (e.g., IFNg) or interleukin (e.g., IL-2) from CD4+ memory and/or effector T-cells, increased proliferation of CD4+ effector and/or memory T cells, increased proliferation of CD8+ effector T-cells, increased antigen responsiveness (e.g., clearance), relative to such levels before the intervention. In one embodiment, the level of enhancement is at least 50%, alternatively 60%, 70%, 80%, 90%, 100%, 120%, 150%, 2, 3, 4, 5, 6, 7, 8, 9, 10, 20, 30, 40, 50, 60, 70, 80, 90, 100, 110, 120, 130, 140, 150, 160 folds or more. The manner of measuring this enhancement is known to one of ordinary skill in the art.
“Tumor immunity” refers to the process in which tumors evade immune recognition and clearance. Thus, as a therapeutic concept, tumor immunity is “treated” when such evasion is attenuated, and the tumors are recognized and attacked by the immune system. Examples of tumor recognition include tumor binding, tumor shrinkage and tumor clearance.
“Immunogenicity” refers to the ability of a particular substance to provoke an immune response. Tumors are immunogenic and enhancing tumor immunogenicity aids in the clearance of the tumor cells by the immune response.
An “agonist activity of an antibody,” as used herein, is the activity with which an antibody can activate a biological activity of the antigen it binds.
An “anti-angiogenic agent” refers to a compound which blocks, or interferes with to some degree, the development of blood vessels. An anti-angiogenic agent may, for instance, be a small molecule or antibody that binds to a growth factor or growth factor receptor involved in promoting angiogenesis. In one embodiment, an anti-angiogenic agent is an antibody that binds to vascular endothelial growth factor (VEGF), such as bevacizumab (AVASTIN).
The term “PD-1 axis binding antagonist” refers to a molecule that inhibits the interaction of a PD-1 axis binding partner with either one or more of its binding partner, so as to remove T-cell dysfunction resulting from signaling on the PD-1 signaling axis—with a result being to restore or enhance T-cell function (e.g., proliferation, cytokine production, target cell killing). As used herein, a PD-1 axis binding antagonist includes a PD-1 binding antagonist (e.g., PD-1 antibody), a PD-L1 binding antagonist (e.g., PD-L1 antibody) and a PD-L2 binding antagonist (e.g., PD-L2 antibody).
The term “PD-1 binding antagonists” refers to a molecule that decreases, blocks, inhibits, abrogates or interferes with signal transduction resulting from the interaction of PD-1 with one or more of its binding partners, such as PD-L1, PD-L2. In some embodiments, the PD-1 binding antagonist is a molecule that inhibits the binding of PD-1 to one or more of its binding partners. In a specific aspect, the PD-1 binding antagonist inhibits the binding of PD-1 to PD-L1 and/or PD-L2. For example, PD-1 binding antagonists include anti-PD-1 antibodies, antigen binding fragments thereof, immunoadhesins, fusion proteins, oligopeptides and other molecules that decrease, block, inhibit, abrogate or interfere with signal transduction resulting from the interaction of PD-1 with PD-L1 and/or PD-L2. In one embodiment, a PD-1 binding antagonist reduces the negative co-stimulatory signal mediated by or through cell surface proteins expressed on T lymphocytes mediated signaling through PD-1 so as render a dysfunctional T-cell less dysfunctional (e.g., enhancing effector responses to antigen recognition). In some embodiments, the PD-1 binding antagonist is an anti-PD-1 antibody. In a specific aspect, a PD-1 binding antagonist is, as disclosed in WO2015/095423, MDX-1106 (nivolumab), MK-3475 (pembrolizumab), CT-011 (pidilizumab) or AMP-224.
The term “PD-L1 binding antagonists” refers to a molecule that decreases, blocks, inhibits, abrogates or interferes with signal transduction resulting from the interaction of PD-L1 with either one or more of its binding partners, such as PD-1, B7-1. In some embodiments, a PD-L1 binding antagonist is a molecule that inhibits the binding of PD-L1 to its binding partners. In a specific aspect, the PD-L1 binding antagonist inhibits binding of PD-L1 to PD-1 and/or B7-1. In some embodiments, the PD-L1 binding antagonists include anti-PD-L1 antibodies, antigen binding fragments thereof, immunoadhesins, fusion proteins, oligopeptides and other molecules that decrease, block, inhibit, abrogate or interfere with signal transduction resulting from the interaction of PD-L1 with one or more of its binding partners, such as PD-1, B7-1. In one embodiment, a PD-L1 binding antagonist reduces the negative co-stimulatory signal mediated by or through cell surface proteins expressed on T lymphocytes mediated signaling through PD-L1 so as to render a dysfunctional T-cell less dysfunctional (e.g., enhancing effector responses to antigen recognition). In some embodiments, a PD-L1 binding antagonist is an anti-PD-L1 antibody. In a specific aspect, an anti-PD-L1 antibody is, as disclosed in WO2015/095423, YW243.55.S70, MDX-1105, MPDL3280A or MEDI4736
The term “PD-L2 binding antagonists” is a molecule that decreases, blocks, inhibits, abrogates or interferes with signal transduction resulting from the interaction of PD-L2 with either one or more of its binding partners, such as PD-1. In some embodiments, a PD-L2 binding antagonist is a molecule that inhibits the binding of PD-L2 to one or more of its binding partners. In a specific aspect, the PD-L2 binding antagonist inhibits binding of PD-L2 to PD-1. In some embodiments, the PD-L2 antagonists include anti-PD-L2 antibodies, antigen binding fragments thereof, immunoadhesins, fusion proteins, oligopeptides and other molecules that decrease, block, inhibit, abrogate or interfere with signal transduction resulting from the interaction of PD-L2 with either one or more of its binding partners, such as PD-1. In one embodiment, a PD-L2 binding antagonist reduces the negative co-stimulatory signal mediated by or through cell surface proteins expressed on T lymphocytes mediated signaling through PD-L2 so as render a dysfunctional T-cell less dysfunctional (e.g., enhancing effector responses to antigen recognition). In some embodiments, a PD-L2 binding antagonist is an immunoadhesin.
“Antibody-dependent cell-mediated cytotoxicity” or “ADCC” refers to a form of cytotoxicity in which secreted immunoglobulin bound onto Fc receptors (FcRs) present on certain cytotoxic cells (e.g. NK cells, neutrophils, and macrophages) enable these cytotoxic effector cells to bind specifically to an antigen-bearing target cell and subsequently kill the target cell with cytotoxins. The primary cells for mediating ADCC, NK cells, express FcγRIII only, whereas monocytes express FcγRT, FcγRII, and FcγRIII. FcR expression on hematopoietic cells is summarized in Table 3 on page 464 of Ravetch and Kinet, Annu. Rev. Immunol 9:457-92 (1991). To assess ADCC activity of a molecule of interest, an in vitro ADCC assay, such as that described in U.S. Pat. No. 5,500,362 or 5,821,337 or U.S. Pat. No. 6,737,056 (Presta), may be performed. Useful effector cells for such assays include PBMC and NK cells. Alternatively, or additionally, ADCC activity of the molecule of interest may be assessed in vivo, e.g., in an animal model such as that disclosed in Clynes et al. PNAS (USA) 95:652-656 (1998). An exemplary assay for assessing ADCC activity is provided in the examples herein.
As used herein, the term “OX40” refers to any natural OX40 from any vertebrate source, including mammals such as primates (eg, humans, cynomolgus monkeys) and rodents (eg, mice and rats), unless otherwise specified. The term encompasses “full length”, unprocessed OX40 and any form of OX40 due to processing in the cell. The term also encompasses naturally occurring variants of OX40, such as splice variants or allelic variants.
“OX40 activation” refers to the activation of the OX40 receptor. Typically, OX40 activation results in signal transduction.
The term “cytotoxic agent” as used in the present invention refers to a substance which inhibits or prevents cell function and/or causes cell death or destruction. For examples of cytotoxic agents, see those disclosed in WO 2015/153513.
“Chemotherapeutic agents” include chemical compounds that are useful in the treatment of cancer. For examples of chemotherapeutic agents, see those disclosed in WO 2015/153513, including erlotinib (TARCEVA®, Genentech/OSI Pharm.), bortezomib (VELCADE®, Millennium Pharm.), disulfiram, alkylating agents, such as thiotepa; alkyl sulfonates; aziridines; and the like; and pharmaceutically acceptable salts, acids, or derivatives of any of the above. Chemotherapeutic agents also include dexamethasone, hydrocortisone, interferon, bevacuzimab, bexarotene, and the like, and pharmaceutically acceptable salts thereof. Chemotherapeutic agents also include non-steroidal anti-inflammatory drugs with analgesic, antipyretic and anti-inflammatory effects. For a detailed illustration and introduction of various chemotherapeutic agents that can be used in the present invention, reference is made to those disclosed in PCT International Application WO2015/153513, which is incorporated herein by reference in its entirety.
The term “cytokine” is a generic term for proteins released by one cell population that act on another cell as intercellular mediators. Examples of such cytokines are lymphokines, monokines; interleukins (ILs) such as IL-1, IL-la, IL-2, IL-3, IL-4, IL-5, IL-6, IL-7, IL-8, IL-9, IL-11, IL-12, IL-15; a tumor necrosis factor such as TNF-α or TNF-β; and other polypeptide factors including LIF and kit ligand (KL) and gamma interferon. As used herein, the term cytokine includes proteins from natural sources or from recombinant cell culture and biologically active equivalents of the native-sequence cytokines, including synthetically produced small-molecule entities and pharmaceutically acceptable derivatives and salts thereof.
The term “diabody” refers to an antibody fragment having two antigen binding sites, and said antibody fragment comprises a heavy chain variable domain (VH) linked to a light chain variable domain (VL) in the same polypeptide chain (VH-VL). The domains are forced to pair with the complementary domains on the other chain to create two antigen binding sites, by using a linker that is too short to make the two domains on the same chain be paired with each other. A diabody can be bivalent or bispecific. Diabodies are more fully described, for example, in EP 404,097; WO 1993/01161; Hudson et al, Nat. Med. 9: 129-134 (2003); and Hollinger et al., Proc. Natl. Acad. Sci. USA 90:6444-6448 (1993). Triabodies and tetrabodies are also described in Hudson et al, Nat. Med. 9: 129-134 (2003).
A “functional Fc region” possesses an “effector function” of a native sequence Fc region. Exemplary “effector functions” include Clq binding; CDC; Fc receptor binding; ADCC; phagocytosis; down regulation of cell surface receptors (e.g. B cell receptor; BCR), etc. Such effector functions generally require the Fc region to be combined with a binding domain (e.g., an antibody variable domain) and can be assessed using various assays as disclosed herein.
“Effector function” refers to those biological activities attributable to the Fc region of an antibody, which vary with the antibody isotopes. Examples of antibody effector's functions include: Clq binding and complement dependent cytotoxicity (CDC); Fc receptor binding; antibody-dependent cell-mediated cytotoxicity (ADCC); phagocytosis; down regulation of cell surface receptors (e.g. B cell receptor); and B cell activation.
“Human effector cells” refer to leukocytes that express one or more FcRs and perform effector functions. In certain embodiments, the cells express at least FcγRIII and perform ADCC effector function(s). Examples of human leukocytes which mediate ADCC include peripheral blood mononuclear cells (PBMC), natural killer (NK) cells, monocytes, cytotoxic T cells, and neutrophils. The effector cells may be isolated from a native source, e.g., from blood.
The term “effective amount” refers to an amount or dose of an antibody or fragment of the invention that produces the desired effect in a patient to be treated, when administered to the patient in single or multiple doses. An effective amount can be readily determined by the attending physician as a person skilled in the art by considering various factors such as the species of the mammal; its size, age and general health; the particular disease involved; the extent or severity of the disease; the response of an individual patient; the specific antibody to be administered; mode of administration; bioavailability characteristics of the formulation to be administered; selected dosing regimen; and use of any concomitant therapy.
“Antibodies and antigen-binding fragments thereof” suitable for use in the present invention include, but are not limited to, polyclonal, monoclonal, monovalent, bispecific, heteroconjugate, multispecific, recombinant, heterologous, heterozygous, chimeric, humanized (especially grafted with CDRs), deimmunized, or human antibody, Fab fragments, Fab′ fragments, F(ab′)2 fragments, fragments produced by Fab expression library, Fd, Fv, disulfide-linked Fv (dsFv), single-chain antibody (e.g., scFv), diabody or tetrabody (Holliger P. et al. (1993) Proc. Natl. Acad. Sci. USA 90 (14), 6444-6448), nanobody (also referred to as a single domain antibody), anti-idiotypic (anti-Id) antibody (including, for example, an anti-Id antibody against the antibody of the invention), and epitope-binding fragments of any of the above.
The term “Fc region” is used herein to define a C-terminal region of an immunoglobulin heavy chain, and the Fc region comprises at least a portion of the constant region. The term includes native Fc region sequence and Fc region variants. In certain embodiments, the human IgG heavy chain Fc region extends from Cys226 or Pro230 to the carbonyl terminus of the heavy chain. However, the C-terminal lysine (Lys447) of Fc region may or may not be present. Unless otherwise indicated, the amino acid residues in Fc region or constant region are numbered according to the EU numbering system, which is also referred to as the EU index, as described in Kabat et al., Sequences of Proteins of Immunological Interest, 5th Ed. Public Health Service, National. Institutes of Health, Bethesda, Md., 1991.
The term “variable region” or “variable domain” refers to the domain of an antibody heavy or light chain that is involved in binding the antibody to antigen. The variable domains of the heavy chain and light chain of a native antibody generally have similar structures, with each domain comprising four conserved framework regions (FRs) and three complementary determinant region (CDR). (See, e.g., Kindt et al. Kuby Immunology, 6th ed., W.H. Freeman and Co., page 91 (2007).) A single VH or VL domain may be sufficient to confer antigen-binding specificity. Furthermore, antibodies that bind to a particular antigen may be isolated using a VH or VL domain from an antibody that binds to the antigen to screen a library of complementary VL or VH domains, respectively. See, e.g., Portolano et al., J. Immunol. 150:880-887 (1993); Clarkson et al., Nature 352:624-628 (1991).
“Framework” or “FR” refers to variable domain residues other than hypervariable region (HVR) (e.g., complementarity determining region) residues. The FR of a variable domain typically consists of four FR domains: FR1, FR2, FR3 and FR4. Accordingly, the HVR and FR sequences generally appear in the following sequence in the heavy chain variable domain (VH) (or the light chain variable domain (VL)): FR1-H1(L1)-FR2-H2(L2)-FR3-H3(L3)-FR4.
A “complementarity determining region” or “CDR region” or “CDR” is an area that is hypervariable in sequence in an antibody variable domain and that forms a structurally defined loop (“hypervariable loop”) and/or contains an antigen contact residue (“antigen contact point”). The CDR is primarily responsible for binding to an epitope. The CDRs of the heavy and light chains are commonly referred to as CDR1, CDR2 and CDR3, numbered sequentially from the N-terminus. The CDRs located within the antibody heavy chain variable domain are referred to as HCDR1, HCDR2 and HCDR3, while the CDRs located within the antibody light chain variable domain are referred to as LCDR1, LCDR2 and LCDR3. In a given light chain variable region or heavy chain variable region amino acid sequence, the exact amino acid sequence boundaries of each CDR can be determined using any one or combination of a number of well-known antibody CDR assignment systems, including for example: Chothia based on the three-dimensional structure of antibodies and the topology of CDR loops (Chothia et al. (1989) Nature 342: 877-883, Al-Lazikani et al., “Standard conformations for the canonical structures of immunoglobulins”, Journal of Molecular Biology, 273, 927-948 (1997)), Kabat based on antibody sequence variability (Kabat et al, Sequences of Proteins of Immunological Interest, 4th edition, US Department of Health and Human Services, National Institutes of Health (1987)), AbM (University of Bath), Contact (University College London), International ImMunoGeneTics database (IMGT) (imgt.cines.fr/ on the World Wide Web), and North CDR definition based on affinity propagation clustering using a large number of crystal structures. The boundaries of CDRs of the antibodies of the invention can be determined by one of skill in the art in accordance with any aspect of the art, such as different assignment systems or combinations.
However, it should be noted that the boundaries of the CDRs of the variable regions of the same antibody obtained based on different assignment systems may vary. That is, the CDR sequences of the same antibody variable region defined under different assignment systems are different. Thus, where an antibody is defined by a particular CDR sequence as defined by the present invention, the scope of the antibody also encompasses an antibody whose variable region sequence comprises the particular CDR sequence, but due to the application of a different protocol (eg different assignment systems or combinations) have different claimed CDR boundaries than the specific CDR boundaries defined by the present invention.
Antibodies with different specificities (i.e., different binding sites for different antigens) have different CDRs. However, although the CDRs differ among antibodies, only a limited number of amino acid positions within the CDRs are directly involved in antigen binding. Using at least two of the Kabat, Chothia, AbM, Contact, and North methods, the minimal overlapping region can be determined to provide a “minimum binding unit” for antigen binding. The minimum binding unit can be a sub-portion of the CDR. As will be apparent to those skilled in the art, residues of the remaining part of the CDR sequences can be determined by the structure of the antibody and protein folding. Accordingly, the invention also contemplates variants of any of the CDRs presented herein. For example, in a variant of one CDR, the amino acid residues of the minimum binding unit may remain unchanged, while the other CDR residues defined by Kabat or Chothia may be replaced by conservative amino acid residues.
The terms “host cell” refers to cells into which exogenous nucleic acid has been introduced, including the progeny of such cells. Host cells include “transformants” and “transformed cells”, which include the primary transformed cell and progeny derived therefrom regardless of the number of passages. Progeny may not be completely identical in nucleic acid content to a parent cell, but may contain mutations. Mutant progeny that have the same function or biological activity as screened or selected for in the originally transformed cell are included herein.
A “human antibody” is one which possesses an amino acid sequence which corresponds to that of an antibody produced by a human or a human cell or derived from a non-human source that utilizes human antibody repertoires or other human antibody-encoding sequences. This definition of a human antibody specifically excludes a humanized antibody comprising non-human antigen-binding residues.
A “human consensus framework” is a framework which represents the most commonly occurring amino acid residues in a selection of human immunoglobulin VL or VH framework sequences. Generally, the selection of human immunoglobulin VL or VH sequences is from a subtype of variable domain sequences. Generally, the subtype of the sequences is a subtype as disclosed in Kabat et al., Sequences of Proteins of Immunological Interest, Fifth Edition, NIH Publication 91-3242, Bethesda Md. (1991), vols. 1-3. In a embodiment, for the VL, the subtype is subtype kappa I as in Kabat et al., supra. In some embodiments, for the VH, the subtype is subtype III as in Kabat et al., supra.
A “humanized” antibody refers to a chimeric antibody comprising amino acid residues from non-human HVRs and amino acid residues from human FRs. In certain embodiments, a humanized antibody will comprise substantially all of at least one, and typically two, variable domains, in which all or substantially all of the HVRs (e.g., CDRs) correspond to those of a non-human antibody, and all or substantially all of the FRs correspond to those of a human antibody. A humanized antibody optionally may comprise at least a portion of an antibody constant region derived from a human antibody. A “humanized form” of an antibody, e.g., a non-human antibody, refers to an antibody that has undergone humanization.
The terms “cancer” and “cancerous” refer to or describe the physiological condition in mammals that is typically characterized by unregulated cell growth. Examples of cancer include but are not limited to, carcinoma, lymphoma, blastoma, sarcoma, and leukemia or lymphoid malignancies. More particular examples of such cancers include, but not limited to, squamous cell cancer (e.g., epithelial squamous cell cancer), lung cancer including small-cell lung cancer, non-small cell lung cancer, adenocarcinoma of the lung and squamous carcinoma of the lung, cancer of the peritoneum, hepatocellular cancer, gastric or stomach cancer including gastrointestinal cancer and gastrointestinal stromal cancer, pancreatic cancer, glioblastoma, cervical cancer, ovarian cancer, liver cancer, bladder cancer, cancer of the urinary tract, hepatoma, breast cancer, colon cancer, rectal cancer, colorectal cancer, endometrial or uterine carcinoma, salivary gland carcinoma, kidney or renal cancer, prostate cancer, vulval cancer, thyroid cancer, hepatic carcinoma, anal carcinoma, penile carcinoma, melanoma, superficial spreading melanoma, lentigo maligna melanoma, acral lentiginous melanomas, nodular melanomas, multiple myeloma and B-cell lymphoma; chronic lymphocytic leukemia (CLL); acute lymphoblastic leukemia (ALL); hairy cell leukemia; chronic myeloblastic leukemia; and post-transplant lymphoproliferative disorder (PTLD), as well as abnormal vascular proliferation associated with phakomatoses, edema (such as that associated with brain tumors), Meigs' syndrome, brain, as well as head and neck cancer, and associated metastases. In certain embodiments, cancers that are amenable to treatment by the antibodies of the invention include lung cancer (e.g., non-small cell lung cancer), liver cancer, gastric cancer or colon cancer, including metastatic forms of those cancers.
The terms “cell proliferative disorder” and “proliferative disorder” refer to disorders that are associated with some degree of abnormal cell proliferation. In one embodiment, the cell proliferative disorder is cancer.
The term “tumor” refers to all neoplastic cell growth and proliferation, whether malignant or benign, and all pre-cancerous and cancerous cells and tissues. The terms “cancer,” “cancerous,” “cell proliferative disorder,” “proliferative disorder” and “tumor” are not mutually exclusive as referred to herein.
An “immunoconjugate” is an antibody conjugated to one or more other agents, including but not limited to a cytotoxic agent.
An “individual” or “subject” includes a mammal. Mammals include, but are not limited to, domestic animals (e.g., cows, sheep, cats, dogs, and horses), primates (e.g., humans and non-human primates such as monkeys), rabbits, and rodents (e.g., mice and rats). In certain embodiments of the present invention, the individual or subject is a human.
An “isolated antibody” is one which has been separated from a component of its natural environment. In some embodiments, an antibody is purified to greater than 95% or 99% purity, for example, as determined by, e.g., electrophoresis (e.g., SDS-PAGE, isoelectric focusing (IEF), capillary electrophoresis) or chromatography (e.g., ion exchange or reverse phase HPLC). For a review of methods for assessment of antibody purity, see, e.g., Flatman et al., J. Chromatogr. B 848:79-87 (2007).
An “isolated nucleic acid” refers to a nucleic acid molecule that has been separated from a component of its natural environment. An isolated nucleic acid includes a nucleic acid molecule contained in cells that ordinarily contain the nucleic acid molecule, but the nucleic acid molecule is present outside the chromosomes or at a chromosomal location that is different from its natural chromosomal location.
An “isolated nucleic acid encoding an anti-OX40 antibody or fragment thereof” refers to one or more nucleic acid molecules encoding the heavy and light chain of an antibody or antigen-binding fragment thereof, including such nucleic acid molecules contained in a single vector or in separate vectors, as well as such nucleic acid molecules present at one or more locations within a host cell.
“Percent (%) amino acid sequence identity” with respect to a reference polypeptide sequence is defined as the percentage of amino acid residues in a candidate sequence that are identical with the amino acid residues in the reference polypeptide sequence, after aligning the sequences and introducing gaps, if necessary, to achieve the maximum percent sequence identity, and not considering any conservative substitutions as part of the sequence identity. Alignment for purposes of determining percent amino acid sequence identity can be achieved in various ways in the art, for instance, using publicly available computer software such as BLAST, BLAST-2, ALIGN or MEGALIGN (DNASTAR) software. Those skilled in the art can determine appropriate parameters for aligning sequences, including any algorithm needed to achieve maximal alignment over the full length of the sequences being compared.
When percentages of sequence identity are referred to in this application, these percentages are calculated relative to the full length of the longer sequence, unless otherwise specifically indicated. The calculation relative to the full length of the longer sequence applies to both the nucleic acid sequence and the polypeptide sequence.
The term “pharmaceutical composition” refers to a formulation which is in such form as to permit the biological activity of an active ingredient contained therein to be effective, and which contains no additional components which are unacceptably toxic to a subject to which the formulation would be administered.
The term “pharmaceutically acceptable adjuvants” refers to a diluent, adjuvant (e.g., Freund's adjuvant (complete and incomplete)), excipient or vehicle co-administered with the therapeutic agent.
As used herein, “treating” refers to slowing, interrupting, arresting, ameliorating, stopping, reducing, or reversing the progression or severity of an existing symptom, condition, disorder, or disease.
The term “vector,” as used herein, refers to a nucleic acid molecule capable of propagating another nucleic acid to which it is linked. The term includes the vector as a self-replicating nucleic acid structure as well as the vector incorporated into the genome of a host cell into which it has been introduced. Certain vectors are capable of directing the expression of nucleic acids to which they are operatively linked. Such vectors are referred to herein as “expression vectors.”
By “subject/patient sample” is meant a collection of cells or fluids obtained from a cancer patient or cancer subject. The source of the tissue or cell sample may be solid tissue as from a fresh, frozen and/or preserved organ or tissue sample or biopsy or aspirate; blood or any blood constituents; bodily fluids such as cerebrospinal fluid, amniotic fluid, peritoneal fluid, or interstitial fluid; cells from any time in gestation or development of the subject. The tissue sample may contain compounds which are not naturally intermixed with the tissue in nature such as preservatives, anticoagulants, buffers, fixatives, nutrients, antibiotics, or the like. Examples of tumor samples herein include, but are not limited to, tumor biopsy, fine needle aspirate, bronchiolar lavage, pleural fluid, sputum, urine, a surgical specimen, circulating tumor cells, serum, plasma, circulating plasma proteins, ascitic fluid, primary cell cultures or cell lines derived from tumors or exhibiting tumor-like properties, as well as preserved tumor samples, such as formalin-fixed, paraffin-embedded tumor samples or frozen tumor samples.
The “instructions” contained in a kit or article as defined herein are used to refer to instructions generally included in commercial packages of therapeutic products containing information on indications, usage, dosage, administration, combination therapy, contraindications and/or warnings for applications involving such therapeutic products.
The Antibody of the Present Invention
The invention thus provides anti-OX40 antibodies as well as fragments thereof.
In one embodiment of the invention, the amino acid changes described herein include substitutions, insertions or deletions of amino acids. Preferably, the amino acid changes described herein are amino acid substitutions, preferably conservative substitutions.
In a preferred embodiment, the amino acid changes described herein occur in regions outside the CDRs (e.g., in FR). More preferably, the amino acid changes described herein occur in regions outside the heavy chain variable region and/or outside the light chain variable region.
In some embodiments, the substitution is conservative substitution. Conservative substitution means that one amino acid is replaced by another amino acid within the same class, for example, one acidic amino acid is replaced by another acidic amino acid, one basic amino acid is replaced by another basic amino acid, or one neutral amino acid is replaced by another neutral amino acid. Exemplary substitutions are shown in Table D below:
In some embodiments, an anti-OX40 antibody or fragment thereof of the invention encompasses an antibody or fragment thereof having a post-translational modification on a light chain variable region, a heavy chain variable region, a light chain or a heavy chain.
In certain embodiments, an antibody provided herein is altered to increase or decrease the extent to which the antibody is glycosylated. Addition or deletion of glycosylation sites to an antibody may be conveniently accomplished by altering the amino acid sequence such that one or more glycosylation sites is created or removed. In some applications, modifications that remove unwanted glycosylation sites may be useful, for example, modifications that remove fucose modules so as to enhance the antibody-dependent cellular cytotoxicity (ADCC) function (see Shield et al. (2002) JBC 277: 26733). In other applications, galactosylation modification may be performed to modify complement-dependent cytotoxicity (CDC).
In certain embodiments, one or more amino acid modifications may be introduced into the Fc region of an antibody provided herein, thereby generating an Fc region variant, so as to enhance the efficiency of the antibody, for example, in the treatment of cancer or cell proliferation disease. The Fc region variant may comprise human Fc region sequence (e.g., human IgG1, IgG2, IgG3 or IgG4 Fc region) comprising an amino acid modification (e.g. a substitution) at one or more amino acid positions.
In certain embodiments, it may be desirable to create cysteine engineered antibodies, e.g., “thioMAbs,” in which one or more residues of an antibody are substituted with cysteine residues.
In certain embodiments, an antibody provided herein may be further modified to contain additional non-proteinous moieties that are known in the art and readily available. The moieties suitable for derivatization of the antibody include but are not limited to water soluble polymers. Non-limiting examples of water soluble polymers include, but are not limited to, polyethylene glycol (PEG), copolymers of ethylene glycol/propylene glycol, carboxymethylcellulose, dextran, polyvinyl alcohol, polyvinyl pyrrolidone, poly-1,3-dioxolane, poly-1,3,6-trioxane, ethylene/maleic anhydride copolymer, poly-amino acids (either homopolymers or random copolymers), and glucan or poly(n-vinyl pyrrolidone)polyethylene glycol, propylene glycol homopolymers, polypropylene oxide/ethylene oxide co-polymers, polyoxyethylated polyols (e.g., glycerol), polyvinyl alcohol, and mixtures thereof.
In some embodiments, the invention encompasses fragments of an anti-OX40 antibody. Examples of antibody fragments include, but are not limited to, Fv, Fab, Fab′, Fab′-SH, F(ab′)2, diabody, linear antibody, single chain antibody molecule (e.g., scFv); and multispecific antibody formed by antibody fragments. Two identical antigen-binding fragments produced by papain digestion on antibody are termed “Fab” fragments, in which each has a single antigen-binding site and a residual “Fc” fragment. Its name reflects the ability susceptible to crystallize. F(ab′)2 fragment is produced by pepsin treatment, and it has two antigen binding sites and is still capable of cross-linking antigen.
In some embodiments, an anti-OX40 antibody of the present invention is a humanized antibody. Different methods for humanizing antibodies are known to those skilled in the art, as reviewed by Almagro & Fransson, the contents of which are incorporated herein by reference in its entirety (Almagro J C and Fransson J (2008) Frontiers in Bioscience 13: 1619-1633).
In some embodiments, an anti-OX40 antibody of the invention is a human antibody. Human antibodies may be prepared using a variety of techniques known in the art. Human antibodies are generally described in van Dijk and van de Winkel, Curr. Opin. Pharmacol 5: 368-74 (2001) and Lonberg, Curr. Opin. Immunol 20: 450-459 (2008).
Antibodies of the present invention may be isolated by screening combinatorial libraries for antibodies with the desired activity or activities. For example, a variety of methods are known in the art for generating phage display libraries and screening such libraries for antibodies possessing the desired binding characteristics. Such methods are reviewed, e.g., in Hoogenboom et al. in Methods in Molecular Biology 178:1-37 (O'Brien et al., ed., Human Press, Totowa, N.J., 2001) and further described, e.g., in the McCafferty et al., Nature 348:552-554; Clackson et al., Nature 352: 624-628 (1991); Marks et al., J. Mol. Biol. 222: 581-597 (1992); Marks and Bradbury, in Methods in Molecular Biology 248:161-175 (Lo, ed., Human Press, Totowa, N.J., 2003); Sidhu et al., J. Mol. Biol. 338(2): 299-310 (2004); Lee et al., J. Mol. Biol. 340(5): 1073-1093 (2004); Fellouse, Proc. Natl. Acad. Sci. USA 101(34): 12467-12472 (2004); and Lee et al., J. Immunol. Methods 284(1-2): 119-132(2004).
In some embodiments, the invention also encompasses an anti-OX40 monoclonal antibody conjugated to other agent, e.g., a therapeutic moiety, such as a cytotoxic agent or an immunosuppressive agent (“immunoconjugates”). Cytotoxic agents include any agent that is harmful to cells. Examples of cytotoxic agents (e.g., chemotherapeutic agents) suitable for forming immunoconjugates are known in the art, see for example WO05/103081. For example, cytotoxic agents include, but are not limited to, radioactive isotopes (e.g., At211, I131, I125, Y90, Re186, Re188, Sm153, Bi212, P32, Pb212 and radioactive isotopes of Lu); chemotherapeutic agents or drugs (e.g., methotrexate, adriamicin, vinca alkaloids (vincristine, vinblastine, etoposide), doxorubicin, melphalan, mitomycin C, chlorambucil, daunorubicin or other intercalating agents); growth inhibitory agents; enzymes and fragments thereof such as nucleic acid hydrolase; antibiotics; toxins such as small molecule toxins or enzymatically active toxins of bacterial, fungal, plant or animal origin, including fragments and/or variants thereof; and various well-known antitumor or anticancer agents. In one embodiment, the cytotoxic agent is a PD-1 axis binding antagonist. In one embodiment, the cytotoxic agent is an antibody, such as an anti-PD-1 antibody or an anti-PD-L1 antibody or an anti-PD-L2 antibody. In one embodiment, the cytotoxic agent is an anti-angiogenic agent, such as bevacizumab.
In some embodiments, an antibody of the invention may be monospecific, bispecific or multispecific. A multispecific monoclonal antibody may be specific for various epitopes of a target polypeptide or may contain antigen binding domains specific for more than one target polypeptides. See, for example, Tutt et al. (1991) J. Immunol. 147: 60-69. An anti-OX40 monoclonal antibody may be linked to or co-expressed with another functional molecule, such as another peptide or protein. For example, an antibody or fragments thereof may be functionally linked to one or more other molecules, such as another antibody or antibody fragment (e.g., anti-PD-1 antibody, anti-PD-L1 antibody or anti-PD-L2 antibody or fragments of said antibodies) (e.g., by chemical coupling, genetic fusion, non-covalent association, or otherwise) to produce a bispecific or multispecific antibody with a second or more binding specificities.
The Nucleic Acid Antibodies of the Present Invention and the Host Cell Comprising the Same
In one aspect, the present invention provides nucleic acids encoding any of the above anti-OX40 antibodies or fragments thereof. The nucleic acid may comprise a nucleic acid encoding an amino acid sequence comprising a light chain variable region and/or a heavy chain variable region of an antibody, or a nucleic acid encoding an amino acid sequence comprising a light and/or heavy chain of an antibody. An exemplary nucleic acid sequence encoding a heavy chain variable region of an antibody comprises a nucleic acid sequence which is at least 90%, 91%, 92%, 93%, 94% 95%, 96%, 97%, 98% or 99% identity to the nucleic acid sequence selected from SEQ ID NOs: 91, 92, 93, 94, 95, 96, 97, 98, 99, 100, 101, 102, 103, 104 or 105, or comprises the nucleic acid sequence selected from SEQ ID NOs: 91, 92, 93, 94, 95, 96, 97, 98, 99, 100, 101, 102, 103, 104 or 105. An exemplary nucleic acid sequence encoding a light chain variable region of an antibody comprises a nucleic acid sequence which is at least 90%, 91%, 92%, 93%, 94% 95%, 96%, 97%, 98% or 99% identity to the nucleic acid sequence selected from SEQ ID NOs: 121, 122, 123, 124, 125, 126, 127, 128 or 129, or comprises the nucleic acid sequence selected from SEQ ID NO: 121, 122, 123, 124, 125, 126, 127, 128 or 129.
In one embodiment, one or more vectors comprising the nucleic acid are provided. In one embodiment, the vector is an expression vector, for example, eukaryotic expression vectors. Vectors include, but are not limited to, viruses, plasmids, cosmids, lambda phage, or yeast artificial chromosomes (YAC). In a preferred embodiment, the expression vector of the invention is a pTT5 expression vector.
In one embodiment, a host cell comprising the vector is provided. Suitable host cells for cloning or expression of antibody-encoding vectors include prokaryotic or eukaryotic cells described herein. For example, antibodies may be produced in bacteria, in particular when glycosylation and Fc effector function are not needed. For expression of antibody fragments and polypeptides in bacteria, see, e.g., U.S. Pat. Nos. 5,648,237, 5,789,199, and 5,840,523. See also Charlton, Methods in Molecular Biology, Vol. 248 (B. K. C. Lo, ed., Humana Press, Totowa, N.J., 2003, pp. 245-254, describing expression of antibody fragments in E. coli. After expression, the antibody may be isolated from the bacterial cell paste in a soluble fraction and can be further purified.
In one embodiment, the host cell is eukaryotic. In another embodiment, the host cell is selected from the group consisting of a yeast cell, a mammalian cell, or other cells suitable for use in the preparation of an antibody or antigen-binding fragments thereof. For example, eukaryotic microorganisms such as filamentous fungi or yeast are cloning or expression hosts suitable for vectors encoding antibodies. For example, fungi and yeast strains, glycosylation pathways of which have been “humanized”, result in the production of antibodies with partial or complete human glycosylation pattern. See Gerngross, Nat. Biotech. 22: 1409-1414 (2004), and Li et al, Nat. Biotech. 24: 210-215 (2006). Host cells suitable for expression of glycosylated antibodies are also derived from multicellular organisms (invertebrates and vertebrates). Vertebrate cells can also be used as hosts. For example, mammalian cell lines which have been engineered to be suitable for suspension growth may be used. Other examples of useful mammalian host cell lines are the monkey kidney CV1 line (COS-7) transformed with SV40; human embryonic kidney line (293HEK or 293 cells, e.g., as described in such as Graham et al, J. Gen Virol. 36:59 (1977)), and so on. Other useful mammalian host cell lines include Chinese hamster ovary (CHO) cells, including DHFR-CHO cells (Urlaub et al, Proc. Natl. Acad. Sci. USA 77: 216 (1980)); and myeloma cell lines such as Y0, NS0 and Sp2/0. For a review of certain mammalian host cell lines suitable for producing antibodies, see, for example, Yazaki and Wu, Methods in Molecular Biology, Vol. 248 (B. K. C. Lo, ed., Humana Press, Totowa, N.J.), pp. 255-268 (2003).
In one embodiment, there is provided a method of preparing an anti-OX40 antibody, wherein the method comprises culturing a host cell comprising a nucleic acid encoding the antibody under conditions suitable for antibody expression, as provided above, and optionally recovering the antibody from the host cell (or host cell culture medium). To recombine to produce an anti-OX40 antibody, a nucleic acid encoding an antibody (e.g., an antibody as described above) is isolated and inserted into one or more vectors for further cloning and/or expression in a host cell. Such nucleic acids are readily isolated and sequenced using conventional procedures (e.g., by using oligonucleotide probes capable of specifically binding to genes encoding heavy and light chains of antibodies).
Determination Method
The anti-OX40 antibodies provided herein can be identified, screened, or characterized for their physical/chemical properties and/or biological activity by a variety of assays known in the art. In one aspect, the antibody of the present invention is tested for its antigen binding activity, for example, by known methods such as ELISA, Western blot, and the like. Binding to OX40 can be determined using methods known in the art, and exemplary methods are disclosed herein. In some embodiments, Bio-light interferometry (eg, Fortebio affinity measurement) or MSD assay is used.
In another aspect, a competition assay can be used to identify antibodies that compete with any of the anti-OX40 antibodies disclosed herein for binding to OX40. In certain embodiments, such a competitive antibody binds to an epitope (eg, a linear or conformational epitope) that is identical or overlapping with an epitope to which any of the anti-OX40 antibodies disclosed herein bind. A detailed exemplary method for locating epitopes bound by antibodies is found in Morris (1996) “Epitope Mapping Protocols”, Methods in Molecular Biology vol. 66 (Humana Press, Totowa, N.J.).
The invention also provides assays for identifying biologically active anti-OX40 antibodies. Biological activity can include, for example, binding to OX40 (e.g., binding to human and/or cynomolgus OX40), increasing OX40-mediated signal transduction (e.g., increasing NFkB-mediated transcription), attenuating cells expressing human OX40 by ADCC, enhancing T Effector cell function (e.g., CD4+ effector T cells) (eg, by enhancing effector T cell proliferation and/or increasing cytokine production of effector T cells (e.g., gamma interferon or interleukin)), enhancing memory T cell function (e.g., CD4+ memory T cells) (eg, by increasing memory T cell proliferation and/or increasing cytokine production of memory T cells (eg, gamma interferon or interleukin)), binding to human effector cells. Antibodies having such biological activity in vivo and/or in vitro are also provided.
In certain embodiments, the antibodies of the invention are tested for such biological activity.
T cell activation can be assayed using methods known in the art. For example, it is determined by the level of a cytokine released after T cell activation, such as gamma interferon or interleukin. OX40 signaling can also be determined using methods well known in the art to determine activation of T cells. In one embodiment, a transgenic cell expressing human OX40 and a reporter gene comprising an NFkB promoter fused to a reporter gene (eg, beta luciferase) is generated. Addition of anti-OX40 antibodies to cells results in elevated NFkB transcription, which is detected using an assay for the reporter gene (eg, a luciferase reporter assay).
Cells for use in any of the above in vitro assays include cells or cell lines that naturally express OX40 or that are engineered to express OX40. Such cells include activated T cells that naturally express OX40, Treg cells, and activated memory T cells. Such cells also include cell lines that express OX40 and cell lines that do not normally express OX40 but have been transfected with a nucleic acid encoding OX40.
It will be appreciated that any of the above assays can be performed by replacing or supplementing the anti-OX40 antibody with an immunoconjugate of the invention.
It will be appreciated that any of the above assays can be performed using an anti-OX40 antibody and other active agents.
Pharmaceutical Compositions and Pharmaceutical Preparations
The invention also includes a composition (including pharmaceutical compositions or pharmaceutical preparations) comprising anti-OX40 antibody or immunoconjugate thereof and a composition comprising polynucleotides encoding the anti-OX40 antibody. In certain embodiments, the composition comprises one or more antibodies or fragments thereof that bind to OX40 or one or more polynucleotides encoding one or more antibodies or fragments thereof that bind to OX40. These compositions may also contain suitable pharmaceutically acceptable adjuvants, such as pharmaceutically acceptable carrier, pharmaceutically acceptable excipients known in the art, including buffers.
Pharmaceutically acceptable carriers suitable for use in the present invention may be sterile liquids such as water and oils, including those from petroleum, animal, plant or synthetic origin, such as peanut oil, soybean oil, mineral oil, sesame oil and the like. Water is a preferred carrier when the pharmaceutical composition is administered intravenously. Saline solution and aqueous dextrose and glycerol solution can also be used as liquid carriers, especially used as injectable solutions. Suitable pharmaceutical excipients include starch, glucose, lactose, sucrose, gelatin, malt, rice, flour, chalk, silica gel, sodium stearate, glyceryl monostearate, talc, sodium chloride, dried skim milk, glycerin, propylene, glycol, water, ethanol, etc. For excipients and the uses thereof, see also “Handbook of Pharmaceutical Excipients”, Fifth Edition, R. C. Rowe, P. J. Seskey and S. C. Owen, Pharmaceutical Press, London, Chicago. If desired, the composition may also contain minor amounts of wetting or emulsifying agents, or pH buffer. These compositions may be in the form of solutions, suspensions, emulsions, tablets, pills, capsules, powders, sustained release preparations and the like. Oral formulations may contain standard carriers such as pharmaceutical grades of mannitol, lactose, starch, magnesium stearate, saccharin.
A pharmaceutical formulation comprising an anti-OX40 antibody of the invention can be prepared by mixing the anti-OX40 antibody of the present invention having desired purity with one or more optional pharmaceutically acceptable adjuvants (Remington's Pharmaceutical Sciences, 16th Ed., Osol, A., ed. (1980)), preferably in the form of a lyophilized preparation or an aqueous solution.
Exemplary lyophilized antibody formulations are described in U.S. Pat. No. 6,267,958. Aqueous antibody formulations include those described in U.S. Pat. No. 6,171,586 and WO2006/044908, and the latter includes histidine-acetate buffer.
The pharmaceutical compositions or formulations of the present invention may also contain one or more active ingredient which is required for a particular indication to be treated, preferably those active ingredients which do not adversely affect each other's complementary activities. For example, it is desirable to further provide other anti-cancer active ingredients, such as chemotherapeutic agents, PD-1 axis binding antagonists (such as anti-PD-1 antibodies or anti-PD-L1 antibodies or anti-PD-L2 antibodies) or anti-angiogenic agents (such as bevacizumab). The active ingredient is suitably present in combination in an amount effective for the intended use.
Sustained release formulations can be prepared. Suitable examples of the sustained release formulations include semipermeable matrices of solid hydrophobic polymers containing antibodies, the matrices are in the form of shaped articles, such as films or microcapsules.
With regard to other components of the pharmaceutical formulation comprising the antibody of the invention, reference is also made to those disclosed in WO2015/153513.
Antibody Treatment and Use
In one aspect, the invention relates to a method of activating T cell or inducing T cell mediated antitumor activity or enhancing an immune response of the body in a subject comprising administering to said subject an effective amount of any of the anti-OX40 antibody or fragment thereof, or immunoconjugates or pharmaceutical compositions comprising said antibody or fragments.
In another aspect, the invention relates to a method of treating tumor, e.g., cancer, in a subject comprising administering to said subject an effective amount of any anti-OX40 antibody or fragment thereof as described herein, or immunoconjugates or pharmaceutical compositions comprising said antibody or fragments. In one embodiment, the cancer is lung cancer (e.g., non-small cell lung cancer), liver cancer, gastric cancer, colon cancer, and the like.
In another aspect, the invention relates to a method of causing antibody-dependent cell-mediated cytotoxicity in a subject comprising administering to said subject an effective amount of any anti-OX40 antibody or fragment thereof described herein, or immunoconjugates or pharmaceutical compositions comprising said antibody or fragments.
In another aspect, the invention relates to a method of treating or delaying various cancers, immune-related diseases, and T-cell dysfunction diseases in a subject, comprising administering to said subject an effective amount of any anti-OX40 antibody or fragment thereof described herein, or immunoconjugates or pharmaceutical compositions comprising said antibody or fragments.
In some embodiments, the methods described herein further comprise administering to the subject one or more therapies (e.g., a therapeutic manner and/or other therapeutic agent). In some embodiments, the treatment manner includes surgery and/or radiation therapy. In some embodiments, the other therapeutic agent is selected from the group consisting of a chemotherapeutic agent, a PD-1 axis binding antagonist (eg, an anti-PD-1 antibody or an anti-PD-L1 antibody or an anti-PD-L2 antibody), or an anti-angiogenic agent (eg, bevacate) Bead monoclonal antibody).
In some embodiments, the subject or individual is a mammal, preferably a human.
In other aspects, the invention provides the use of an anti-OX40 antibody or fragment thereof in the manufacture or preparation of a medicament for the treatment of a related disease or condition mentioned above.
In some embodiments, an antibody or antibody fragment thereof of the invention may delay the onset of conditions and/or symptoms associated with the condition.
In some embodiments, the cancer suitable for the present invention is selected from the group consisting of lung cancer (eg, non-small cell lung cancer), liver cancer, gastric cancer, colon cancer, and the like.
In some embodiments, examples of cancer further include, but are not limited to, B-cell proliferative disorders, which further include, but are not limited to, lymphomas (e.g., B-Cell Non-Hodgkin's lymphomas (NHL)) and lymphocytic leukemias.
In some embodiments of any of the methods of the invention, the cancer as described herein displays human effector cells (e.g., is infiltrated by human effector cells). Methods for detecting human effector cells are well known in the art, including, e.g., by IHC. In some embodiments, the cancer display high levels of human effector cells. In some embodiments, human effector cells are one or more of NK cells, macrophages, monocytes.
In some embodiments of any of the methods of the invention, the cancer as described herein displays cells expressing FcR (e.g., is infiltrated by cells expressing FcR). Methods for detecting FcR are well known in the art, including, e.g., by IHC. In some embodiments, the cancer display high levels of cells expressing FcR. In some embodiments, FcR is FcγR. In some embodiments, FcR is activating FcγR. In some embodiments, the cancer is non-small cell lung cancer (NSCLC), glioblastoma, neuroblastoma, melanoma, breast carcinoma (e.g. triple-negative breast cancer), gastric cancer, colorectal cancer (CRC), or hepatocellular carcinoma.
In some embodiments of any of the methods of the invention, administration of an anti-OX40 antibody or fragment thereof of the invention having agonist activity is combined with administration of a tumor antigen. In some embodiments, the tumor antigen comprises a protein. In some embodiments, the tumor antigen comprises a nucleic acid. In some embodiments, the tumor antigen is a tumor cell.
In certain embodiments, the methods and uses described herein further comprise administering to the subject one or more therapies (e.g., therapeutical manner and/or other therapeutical agents). Antibodies of the invention can be used either alone or in combination with other agents in a therapy. For instance, an antibody of the invention may be co-administered with at least one additional therapeutic agent.
Such combination therapies encompass combined administration (for example, two or more therapeutic agents are included in the same or separate formulations), and separate administration, in which case, administration of the antibody of the invention can occur prior to, simultaneously, and/or following, administration of the additional therapeutic agent or agents. In one embodiment, administration of the anti-OX40 antibody and administration of an additional therapeutic agent occur within about one month, or within about one, two or three weeks, or within about one, two, three, four, five, or six days, of each other. Antibodies of the invention can also be used in combination with surgery or radiation therapy.
In some embodiments, the therapeutic manner includes surgery (e.g., tumor resection); radiation therapy (e.g., external particle beam therapy, which involves three-dimensional conformal radiation therapy in which the illumination region is designed), local irradiation (e.g., irradiation pointing to a pre-selected target or organs) or focused irradiation) and the like.
In some embodiments, an anti-OX40 antibody or fragment thereof of the invention may be administered in combination with a chemotherapy or chemotherapeutic agent. In some embodiments, an anti-OX40 antibody or fragment thereof of the invention may be administered in combination with a radiotherapy or radiotherapy agent. In some embodiments, an anti-OX40 antibody or fragment thereof of the invention may be administered in combination with a targeted therapy or a targeted therapeutic agent. In some embodiments, the anti-OX40 antibody or fragment thereof of the invention may be administered in combination with an immunotherapy or immunotherapeutic agent, such as a monoclonal antibody.
In some embodiments, the anti-OX40 antibody or fragment thereof of the invention may be administered in combination with a PARP inhibitor (e.g., Olaparanib, Rucaparib, Niraparib, Cediranib, BMN673, Veliparib)
In some embodiments, the anti-OX40 antibody or fragment thereof of the invention may be administered in combination with a PD-1 axis binding antagonist. A PD-1 axis binding antagonist includes but is not limited to a PD-1 binding antagonist, a PD-L1 binding antagonist and a PD-L2 binding antagonist. Alternative names for “PD-1” include CD279 and SLEB2. Alternative names for “PD-L1” include B7-H1, B7-4, CD274, and B7-H. Alternative names for “PD-L2” include B7-DC, Btdc, and CD273. In some embodiments, PD-1, PD-L1, and PD-L2 are human PD-1, PD-L1 and PD-L2. In some embodiments, the PD-1 binding antagonist is a molecule that inhibits the binding of PD-1 to its ligand or binding partners. In a specific aspect the PD-1 ligandare PD-L1 and/or PD-L2. In another embodiment, a PD-L1 binding antagonist is a molecule that inhibits the binding of PD-L1 to its binding partners. In a specific aspect, PD-L1 binding partners are PD-1 and/or B7-1. In another embodiment, the PD-L2 binding antagonist is a molecule that inhibits the binding of PD-L2 to its binding partners. In a specific aspect, a PD-L2 binding partner is PD-1. The antagonist may be an antibody, an antigen binding fragment thereof, an immunoadhesin, a fusion protein, or oligopeptide. In some embodiments, the PD-1 binding antagonist is an anti-PD-1 antibody (e.g., a human antibody, a humanized antibody, or a chimeric antibody). In some embodiments, the anti-PD-1 antibody is selected from the group consisting of MDX-1106 (nivolumab, OPDIVO), Merck 3475 (MK-3475, pembrolizumab, KEYTRUDA) and CT-011 (Pidilizumab). In some embodiments, the PD-1 binding antagonist is an immunoadhesin (e.g., an immunoadhesin comprising an extracellular or PD-1 binding portion of PD-L1 or PD-L2 fused to a constant region (e.g., an Fc region of an immunoglobulin sequence). In some embodiments, the PD-1 binding antagonist is AMP-224. In some embodiments, the PD-L1 binding antagonist is anti-PD-L1 antibody. In some embodiments, the anti-PD-L1 binding antagonist is selected from the group consisting of YW243.55.S70, MPDL3280A, MEDI4736 and MDX-1105. MDX-1105, also known as BMS-936559, is an anti-PD-L1 antibody described in WO2007/005874. Antibody YW243.55.S70 (heavy and light chain variable region sequences shown in SEQ ID Nos. 20 and 21, respectively) is an anti-PD-L1 described in WO2010/077634 A1. MDX-1106, also known as MDX-1106-04, ONO-4538, BMS-936558 or nivolumab, is an anti-PD-1 antibody described in WO2006/121168. Merck 3475, also known as MK-3475, SCH-900475 or pembrolizumab, is an anti-PD-1 antibody described in WO2009/114335. CT-011, also known as hBAT, hBAT-1 or pidilizumab, is an anti-PD-1 antibody described in WO2009/101611. AMP-224, also known as B7-DCIg, is a PD-L2-Fc fusion soluble receptor described in WO2010/027827 and WO2011/066342. In some embodiments, the anti-PD-1 antibody is MDX-1106. Alternative names for “MDX-1106” include MDX-1106-04, ONO-4538, BMS-936558 or nivolumab. In some embodiments, the anti-PD-1 antibody is nivolumab (CAS Registry Number: 946414-94-4).
In some embodiments, an anti-OX40 antibody or fragment thereof of the invention may be administered in combination with an agonist directed against an activating co-stimulatory molecule. In some embodiments, an activating co-stimulatory molecule may include CD40, CD226, CD28, GITR, CD137, CD27, HVEM, or CD127. In some embodiments, the agonist directed against an activating co-stimulatory molecule is an agonist antibody that binds to CD40, CD226, CD28, OX40, GITR, CD137, CD27, HVEM, or CD127. In some embodiments, an anti-OX40 antibody or fragment thereof of the invention may be administered in combination with an antagonist directed against an inhibitory co-stimulatory molecule. In some embodiments, an inhibitory co-stimulatory molecule may include CTLA-4 (also known as CD152), PD-1, TIM-3, BTLA, VISTA, LAG-3, B7-H3, B7-H4, IDO, TIGIT, MICA/B, or arginase. In some embodiments, the antagonist directed against an inhibitory co-stimulatory molecule is an antagonist antibody that binds to CTLA-4, PD-1, TIM-3, BTLA, VISTA, LAG-3 (e.g., LAG-3-IgG fusion protein (IMP321)), B7-H3, B7-H4, IDO, TIGIT, MICA/B, or arginase.
In some embodiments, an anti-OX40 antibody or fragment thereof of the invention may be administered in combination with a treatment comprising adoptive transfer of a T cell (e.g., a cytotoxic T cell or CTL) expressing a chimeric antigen receptor (CAR).
In some embodiments, an anti-OX40 antibody or fragment thereof of the invention may be administered in combination with an angiogenesis inhibitor. In some embodiments, an anti-OX40 antibody or fragment thereof of the invention can be administered in combination with bevacizumab (also known as AVASTIN®, Genentech).
In some embodiments, the anti-OX40 antibody or fragment thereof of the invention may be administered in combination with an angiogenesis inhibitor and in combination with a PD-1 axis binding antagonist (e.g., a PD-1 binding antagonist such as an anti-PD-1 antibody, a PD-L1 binding antagonist such as an anti-PD-L1 antibody, and a PD-L2 binding antagonist such as an anti-PD-L2 antibody). In some embodiments, the anti-OX40 antibody or fragment thereof of the invention may be administered in combination with bevacizumab and a PD-1 axis binding antagonist (e.g., a PD-1 binding antagonist such as an anti-PD-1 antibody, a PD-L1 binding antagonist such as an anti-PD-L1 antibody, and a PD-L2 binding antagonist such as an anti-PD-L2 antibody). In some embodiments, the anti-OX40 antibody or fragment thereof of the invention may be administered in combination with bevacizumab and MDX-1106 (nivolumab, OPDIVO). In some embodiments, the anti-OX40 antibody or fragment thereof of the invention may be administered in combination with bevacizumab and Merck 3475 (MK-3475, pembrolizumab, KEYTRUDA). In some embodiments, the anti-OX40 antibody or fragment thereof of the invention may be administered in combination with bevacizumab and CT-011 (Pidilizumab). In some embodiments, the anti-OX40 antibody or fragment thereof of the invention may be administered in combination with bevacizumab and YW243.55.570. In some embodiments, the anti-OX40 antibody or fragment thereof of the invention may be administered in combination with bevacizumab and MPDL3280A. In some embodiments, the anti-OX40 antibody or fragment thereof of the invention may be administered in combination with bevacizumab and MEDI4736. In some embodiments, the anti-OX40 antibody or fragment thereof of the invention may be administered in combination with bevacizumab and MDX-1105.
In some embodiments, the anti-OX40 antibody or fragment thereof of the invention may be administered in combination with an anti-tumor agent. In some embodiments, the anti-OX40 antibody or fragment thereof of the invention may be administered in combination with an inhibitor of Bruton's tyrosine kinase (BTK).
In some embodiments, the anti-OX40 antibody or fragment thereof of the invention may be administered in combination with obinutuzumab and a PD-1 axis binding antagonist (e.g., a PD-1 binding antagonist such as an anti-PD-1 antibody, a PD-L1 binding antagonist such as an anti-PD-L1 antibody, and a PD-L2 binding antagonist such as an anti-PD-L2 antibody).
In some embodiments, an anti-OX40 antibody or fragment thereof of the invention may be administered in combination with a cancer vaccine. In some embodiments, the cancer vaccine is a peptide cancer vaccine, which in some embodiments is a personalized peptide vaccine. In some embodiments the peptide cancer vaccine is a multivalent long peptide, a multi-peptide, a peptide cocktail, a hybrid peptide, or a peptide-pulsed dendritic cell vaccine (see, e.g., Yamada et al., Cancer Sci, 104: 14-21, 2013).
In some embodiments, an anti-OX40 antibody or fragment thereof of the invention may be administered in combination with an adjuvant. In some embodiments, an anti-OX40 antibody or fragment thereof of the invention may be administered in combination with a treatment comprising a TLR agonist, e.g., Poly-ICLC (also known as Hiltonol®), LPS, MPL, or CpG ODN.
In some embodiments, an anti-OX40 antibody or fragment thereof of the invention may be administered in combination with a tumor necrosis factor (TNF) a. In some embodiments, the anti-OX40 antibody or fragment thereof of the invention may be administered in combination with interleukins (e.g., IL-1, IL-10, IL-4, IL-13, IL-17, etc.). In some embodiments, the anti-OX40 antibody or fragment thereof of the invention may be administered in combination with the treatment of targeting CXCL10. In some embodiments, the anti-OX40 antibody or fragment thereof of the invention may be administered in combination with the treatment of targeting CCLS. In some embodiments, the anti-OX40 antibody or fragment thereof of the invention may be administered in combination with an LFA-1 or ICAMl agonist. In some embodiments, an anti-OX40 antibody or fragment thereof of the invention may be administered in combination with a Selectin agonist.
In some embodiments, an anti-OX40 antibody or fragment thereof of the invention may be administered in combination with an inhibitor of B-Raf.
In some embodiments, the anti-OX40 antibody or fragment thereof of the invention may be administered in combination with an inhibitor of B-Raf (e.g., vemurafenib or dabrafenib) and an inhibitor of MEK (e.g., MEK1 and/or MEK2), (e.g., cobimetinib or trametinib).
In some embodiments, the anti-OX40 antibody or fragment thereof of the invention may be administered in combination with an inhibitor of c-Met.
In some embodiments, an anti-OX40 antibody or fragment thereof of the invention may be administered in combination with an agent that selectively degrades the estrogen receptor.
In some embodiments, the anti-OX40 antibody or fragment thereof of the invention may be administered in combination with radiation therapy.
In some embodiments, an anti-OX40 antibody or fragment thereof of the invention may be administered in combination with an oncolytic virus.
More therapies or therapeutic agents or pharmaceuticals or active ingredients that can be combined with the anti-OX40 antibody or fragment thereof of the invention are described in WO2015/153513.
Such combination therapies noted above encompass combined administration (where two or more therapeutic agents are included in the same or separate formulations), and separate administration, in which case, administration of the antibody of the invention can occur prior to, simultaneously, and/or following, administration of the additional therapeutic agent and/or adjuvant. Antibodies of the invention can also be used in combination with radiation therapy
An antibody of the invention (and any additional therapeutic agent) can be administered by any suitable means, including parenteral, intrapulmonary, and intranasal, and, if desired for local treatment, intralesional administration. Parenteral infusions include intramuscular, intravenous, intraarterial, intraperitoneal, or subcutaneous administration. Dosing can be by any suitable route, e.g. by injections, such as intravenous or subcutaneous injections, depending in part on whether the administration is brief or chronic. Various dosing schedules including but not limited to single or multiple administrations over various time-points, bolus administration, and pulse infusion are contemplated herein.
For the prevention or treatment of disease, the appropriate dosage of an antibody of the invention (when used alone or in combination with one or more other additional therapeutic agents) will depend on the type of disease to be treated, the type of antibody, the severity and course of the disease, whether the antibody is administered for preventive or therapeutic purposes, previous therapy, the patient's clinical history and response to the antibody, and the discretion of the attending physician. The antibody is suitably administered to the patient at one time or over a series of treatments.
Methods and Compositions for Diagnosis and Detection
In certain embodiments, any anti-OX40 antibody or antigen-binding fragment thereof provided herein may be used to detect the presence of OX40 in a biological sample. The term “detection” is used herein to include quantitative or qualitative detection. In certain embodiments, the biological sample is another liquid sample of blood, serum, or biological origin. In certain embodiments, the biological sample comprises cells or tissues.
In one embodiment, an anti-OX40 antibody is provided for a diagnostic or detection method. In another aspect, a method is provided for detecting the presence of OX40 in a biological sample. In certain embodiments, the method comprises detecting the presence of the OX40 protein in a biological sample. In certain embodiments, the OX40 is human OX40. In certain embodiments, the method comprises contacting a biological sample with an anti-OX40 antibody as described herein under conditions that allow binding of the anti-OX40 antibody to OX40 and detecting whether a complex is formed between the anti-OX40 antibody and the OX40. The method may be in vitro or in vivo. In one embodiment, the anti-OX40 antibody is used to select a subject suitable for treatment with an anti-OX40 antibody, for example wherein the OX40 is a biomarker for selecting a patient.
In one embodiment, the antibody of the present invention may be used to diagnose cancer or tumors.
In certain embodiments, a labeled anti-OX40 antibody is provided. The marker includes, but is not limited to, directly detected markers or portions (such as fluorescent labels, chromophore labels, electronically dense labels, chemiluminescent labels and radiolabeled labels), as well as indirectly detected moieties such as enzymes or ligands, e.g., through enzymatic reactions or molecular interactions. Exemplary markers include, but are not limited to, radioisotopes 32P, 14C, 125I, 3H and 131I, fluorophores such as rare earth chelates or fluorescein and its derivatives, rhodamine and its derivatives, dansyl, umbelliferone, luceriferase, for example, firefly luciferase and bacterial luciferase (U.S. Pat. No. 4,737,456), fluorescein, 2,3-dihydrophthalazinedione, horseradish peroxidase (HR), alkaline phosphatase, β-galactosidase, glucoamylase, lyase, carbohydrate oxidase, for example, glucose oxidase, galactose oxidase, and glucose-6-phosphate dehydrogenase, heterocyclic oxidases such as uricase and xanthine oxidase, as well as enzymes that oxidize dye precursors using hydrogen peroxide, such as HR, lactoperoxidase, microperoxidase, biotin/avidin, spin label, phage label, stable free radicals, and the like.
In one aspect, the present invention provides diagnostic methods, such as for identifying cancer patients who are likely to respond to anti-OX40 antibody therapy.
In some embodiments, provided is a method for identifying a patient likely to respond to an anti-OX40 antibody treatment or a method for diagnosing cancer, the method comprising (i) determining the presence or absence or amount (e.g., number of each given size of the samples) of FcR-expressing cells from a cancer sample of the patient; (ii) if the sample contains cells expressing FcR (e.g., a high number of cells expressing FcR), the patient is identified as being likely to respond, or diagnose said patient as having cancers comprising FcR (e.g., high FcR). Methods for detecting cells expressing FcR are well known in the art and include, for example, IHC. In some embodiments, FcR is FcγR. In some embodiments, FcR is activating FcγR. In some embodiments, the cancer is any of the cancers described herein. In some embodiments, the cancer is non-small cell lung cancer (NSCLC), glioblastoma, neuroblastoma, melanoma, breast cancer (e.g., triple negative breast cancer), gastric cancer, colorectal cancer (CRC) or hepatocellular carcinoma. In some embodiments, the method is an in vitro method.
In some embodiments, provided is a method for identifying a patient likely to respond to an anti-OX40 antibody treatment or a method for diagnosing cancer, the method comprising (i) determining the presence or absence or amount (e.g., number of each given size of the samples) of human effector cells (e.g., invasive effector cells) from the patient's cancer sample, and (ii) if the sample comprises effector cells (e.g., a high number of effector cells), the patient is identified as being likely to respond, or diagnosed as having cancer comprising human effector cell. Methods for detecting invasive human effector cells are well known in the art and include, for example, IHC. In some embodiments, the human effector cells are one or more of NK cells, macrophages, monocytes. In some embodiments, the effector cells express the activating FcγR. In some embodiments, the method is an in vitro method. In some embodiments, the cancer is any of the cancers described herein. In some embodiments, the cancer is non-small cell lung cancer (NSCLC), glioblastoma, neuroblastoma, melanoma, breast cancer (e.g., triple negative breast cancer), gastric cancer, colorectal cancer (CRC) or hepatocellular carcinoma.
In some embodiments, a method is provided for recommending treatment to a cancer patient comprising the steps of a method for identifying a patient likely to respond to an anti-OX40 antibody treatment or a method for diagnosing cancer as described above, and (iii) when the sample has cells expressing FcR or has human effector cells, it is recommended an anti-OX40 antibody (e.g., anti-OX40 antibody or the fragment thereof of the present invention) treatment.
In some embodiments, a method is provided for treating a cancer patient comprising the steps a method for identifying a patient likely to respond to an anti-OX40 antibody treatment or a method for diagnosing cancer as described above, and (iii) when the sample has cells expressing FcR or has human effector cells, the patient is treated with an anti-OX40 antibody (e.g., an anti-OX40 antibody or the fragment thereof of the present invention).
In some embodiments of any invention provided herein, the sample is obtained prior to treatment with anti-OX40 antibody. In some embodiments, the sample is obtained prior to treatment with the cancer drug. In some embodiments, the sample is obtained after cancer metastasis. In some embodiments, the sample is fixed with formalin and coated with paraffin (FFPE). In some embodiments, the sample is a biopsy (e.g., a core biopsy), a surgical specimen (e.g., from a surgically resected specimen), or a fine needle aspirate.
Sequences of the Exemplary Anti-OX40 Antibody of the Present Invention
X1 is
These and other aspects and embodiments of the present invention are described in the drawings (hereinafter briefly described) and the detailed description of the invention and are illustrated in the following examples. Any or all of the features discussed above and throughout this application may be combined in various embodiments of the invention. The invention is further illustrated by the following examples, which are to be understood by way of illustration and not limitation, and the skilled person in the art can make various modifications.
Anti-OX40 antibodies were identified by the Adimab antibody platform. Libraries and their use in screening procedures are described, for example, in Xu et al, 2013; WO2009036379; WO2010105256; WO2012009568.
The following anti-OX40 antibodies of the present invention were expressed in yeast or CHO-S cell or 293 HEK cells and then purified:
The following control antibodies were expressed in 293HEK cells and then purified:
As used herein, pogalizumab is a human IgG1 OX40 antibody transiently expressed in 293 HEK cells that utilizes the heavy chain and light chain sequences from Proposed INN: List 114 (c.f, WHO Drug Information, Vo. 29, No. 4, pg. 503-602, 2015. As used herein, Hu106-222 is a humanized IgG1 OX40 antibody transiently expressed in 293 HEK cells that utilizes the heavy chain and light chain sequences from U.S. Pat. No. 9,006,399. As used herein, 11D4 is a humanized IgG1 OX40 antibody transiently expressed in 293 HEK cells that utilizes the heavy chain and light chain sequences from U.S. Pat. No. 8,236,930. As used herein, tavolixizumab is a humanized IgG1 OX40 antibody transiently expressed in 293 HEK cells that utilizes the heavy chain and light chain sequences from Proposed INN: List 115 (c.f, WHO Drug Information, Vol. 30, No. 2, pg. 241-357, 2016.
For the Treatment of Yeast Material:
Yeast clones were grown to saturation and then induced for 48 h at 30° C. with shaking. After induction, yeast cells were pelleted and the supernatants were harvested for purification. IgGs were purified using a Protein A column and eluted with acetic acid, PH 2.0. Fab fragments were generated by papain digestion and purified over KappaSelect (GE Healtheare LifeSciences).
For the Treatment of CHO-S Cells:
Expression CHO-S cell lines were generated according to the manufacturer's instructions using the Freedom® CHO-S® Kit (Invitrogen). For mAb expression, DNA sequences of heavy and light chains were inserted into the pCHO 1.0 plasmid with the heavy chain upstream of the light chain. Full length human OX40 CDS sequences (purchased from Sino Biological) were inserted into the pCHO 1.0 vector for the generation of stable overexpression cell lines.
For the Treatment of 293HEK Cells:
For transient expression of proteins in 293HEK cells, the vector pTT5 was used with heavy and light chains of the antibodies cloned into a standalone vector. Transfection into 293HEK cells was carried out using standard procedures with PEI; supernatants were collected after 7 days of culture and purified on an AKTA system (GE).
The kinetics and equilibrium dissociation constant (KD) for human OX40 is determined for antibodies of the present invention using MSD and bio-light interferometry (ForteBio) assay methods.
1. ForteBio KD Assay (Bio-Light Interferometry)
ForteBio affinity measurements were performed generally as previously described (Estep, P., et al., High throughput solution-based measurement of antibody-antigen affinity and epitope binning. MAbs, 2013. 5(2): p. 270-8.). Briefly, ForteBio affinity measurements were performed by equilibrating sensors off-line in assay buffer for 30 min, and then monitoring on-line for 60 seconds for baseline establishmen, loading the purified antibodies obtained as described above online onto AHQ sensors (ForteBio). Sensors with loaded antibodies were exposed to 100 nM OX40 antigens for 5 min, afterwards they were transferred to assay buffer for dissociation of 5 min for off-rate measurement. Kinetics was analysed using the 1:1 binding model.
In experiments performed as described in the above assay, ADI-20051. ADI-20065, ADI-20066, ADI-20078, ADI-20112, ADI-20113 and ADI-20118 (Fab format of anti-OX40 antibody in the form of IgG1 expressed in yeast), bind human OX40_Fc (human OX40 binding to antibody Fc moiety, purchased from R&D Systems) with a monovalent KD in sub micromolar range. When the antibody was on the sensor tip, ADI-20048, ADI-20051, ADI-20065, ADI-20066, ADI-20078, ADI-20096, ADI-20112, ADI-20113 and ADI-20118 (anti-OX40 antibody in an IgG1 format and expressed in yeast), bind human OX40 Fc (purchased from R&D Systems) with an avid KD value at a single digit nanomolar to lower range; and bind cyno OX40 Fc (purchased from Acro Biosystems) at double single digit nanomolar or lower range. When the antibody was on the sensor tip, ADI-20048, ADI-20078 and ADI-20096 (anti-OX40 antibodies in an IgG1 format and expressed in yeast), bind mouse OX40_Fc (purchased from Acro Biosystems) at single digit nanomolar values (Table 8).
After affinity maturation of ADI-20112 and ADI-20078, its progenies ADI-25650, ADI-25651, ADI-25652, ADI-25653, ADI-25654, ADI-23515, ADI-23518, and ADI-23519 show improved monovalent binding shown by KD values of the antibodies in Fab format produced from IgG1 expressed in yeast when binding to human OX40 Fc on a sensor chip; improvement of avid binding affinity when the antibody was on the sensor tip, in an IgG1 format and expressed in yeast, binding to human OX40 Fc in solution; and improvement of binding affinity when the antibody was on the sensor tip, in an IgG1 format and expressed in yeast, binding to cyno OX40 Fc in solution (Table 9).
MSD-SET Kinetic Assay
Equilibrium affinity measurements see Estep, P., et al., MAbs, 2013. 5(2): p. 270-8. Solution equilibrium titrations (SET) are performed in PBS+0.1% IgG-Free BSA (PBSF) where antigen (biotin-OX-40 monomer (biotinylated OX40, purchased from Acro Biosystems) is held constant at 10-100 pM and is incubated with 3- to 5-fold serial dilutions of Fab or mAbs starting at 5-100 nM (experimental condition is sample dependent). Antibodies diluted at 20 nM in PBS are coated onto standard bind MSD-ECL plates (Multi-array 96-well plate, Cat #: L15XA-3, MSD) overnight at 4° C. or at room temperature for 30 min. Plates are blocked with BSA for 30 min whilst shaking at 700 rpm. Plates are then washed 3× with wash buffer (PBSF+0.05% Tween 20). SET samples are applied and incubated on the plates for 150 s with shaking at 700 rpm followed by one wash. Antigen captured on a plate is detected with 250 ng/mL sulfo tag-labeled streptavidin in PBSF by incubation on the plate for 3 min. The plates are washed three times with wash buffer and are then read on the MSD Sector Imager 2400 instrument using 1× Read Buffer T (Cat #R92TC-1, MSD) with surfactant. The percentage free antigen is plotted as a function of titrated antibody in Prism and fit to a quadratic equation to extract the KD. To improve throughput, liquid handling robots are used throughout MSD-SET experiments, including for SET sample preparation.
In experiments performed as described in the above assay, Fab form of ADI-25650, ADI-25651, ADI-25652, ADI-25653, ADI-25654, ADI-23515 and ADI-23519, in an IgG1 format and expressed in yeast, bind human OX40 with detectable sub-nanomolar monovalent KD values (Table 10).
The binding of an antibody of the present invention to human OX40 may be measured in a flow cytometry-based assay.
1. Binding to Human OX40 on CHO Cells
CHO cells overexpressing human OX40 (CHO-hOX40 cells) were generated by transfecting pCHO1.0 vector (Invitrogen) with human OX40 cDNA (Sino Biological, HG10481-G) cloned into the MCS. CHO-hOX40 cells (0.2×106 cells) are incubated with the experimental antibody at 100 nM for 30 min in PBS 0.1% BSA on ice. Cells are then washed at least twice, and are incubated with a secondary antibody (PE-labelled, SouthernBiotech, at final concentration of 5 μg/ml) in PBS 0.1% BSA for 30 min on ice (protected from light). Cells are washed at least twice and analysed via flow cytometry. Flow cytometry is performed on a Canto II system (BD Biosciences) and MFIs are calculated accordingly.
In experiments performed as described in the above assay, ADI-20048, ADI-20051, ADI-20065, ADI-20066, ADI-20078, ADI-20096, ADI-20112, ADI-20113 and ADI-20118 (IgG1 format, expressed in yeast) binds OX40 overexpressed on CHO cells with MFI values >1000 fold difference compared with stained wild-type CHO cells (Table 11).
In experiments performed as described in the above assay, after affinity maturation of ADI-20112 and ADI-20078, its progenies ADI-25650, ADI-25651, ADI-25652, ADI-25653, ADI-25654, ADI-23515, ADI-23518, and ADI-23519 retain binding strength to CHO cells overexpressing human OX40 (Table 12).
In experiments performed as described in the above assay, ADI-20051, ADI-20078, ADI-20112 and ADI-20118, in IgG1 format, expressed in 293HEK cells, bind OX40 overexpressed on CHO cells with EC50 values of 2.734, 2.874, 2.799, and 6.71 nM, respectively (Table 13).
In experiments performed as described in the above assay, ADI-20051, ADI-20078, ADI-20112 and ADI-20118, in IgG2 format, expressed in 293HEK cells, bind OX40 overexpressed on CHO cells with EC50 values of 5.49, 4.022, 2.777, and 5.838 nM, respectively (Table 14).
2. Binding to Human OX40 on 293HEK Cells
The binding of an antibody of the present invention to human OX40 may be measured in a flow cytometry assay. 293HEK cells overexpressing human OX40 (0.2×106 cells, prepared by the similar method for CHO cells as described above) are incubated with the experimental antibody at 100 nM for 30 min in PBS 0.1% BSA on ice. Cells are then washed at least twice, and are incubated with a secondary antibody (PE-labelled, SouthernBiotech, at final concentration of 5 μg/ml) in PBS 0.1% BSA for 30 min on ice (protected from light). Cells are washed at least twice and analysed via flow cytometry. Flow cytometry is performed on an Accuri C6 system (BD Biosciences) and MFIs are calculated accordingly.
In experiments performed as described in the above assay, ADI-20048, ADI-20051, ADI-20065, ADI-20066, ADI-20078, ADI-20096, ADI-20112, ADI-20113 and ADI-20118 (IgG1 format, expressed in yeast) binds OX40 in a dose-dependent manner, compared to the negative control IgG1 control (Table 15).
3. Binding to Human OX40 on Activated Primary CD4+ T Cells
The binding of an antibody of the present invention to human OX40 on primary T cells may be measured in a flow cytometry assay.
Primary CD4+ T cells from healthy donors are activated with anti-CD3/CD28 DynaBeads (Invitrogen) for 48 hours and 0.2×106 cells are incubated with the experimental antibody at 100 nM for 30 min in PBS 0.1% BSA on ice. Cells are then washed at least twice, and are incubated with a secondary antibody (PE-labelled, SouthernBiotech, at final concentration of 5 μg/ml) in PBS 0.1% BSA for 30 min on ice (protected from light). Cells are washed at least twice and analysed via flow cytometry. Flow cytometry is performed on an Accuri C6 system (BD Biosciences) and MFIs are calculated accordingly.
In experiments performed as described in the above assay, ADI-20048, ADI-20051, ADI-20065, ADI-20066, ADI-20078, ADI-20096, ADI-20112, ADI-20113 and ADI-20118 (IgG1 format, expressed in yeast) binds OX40 with a high MFI signal compared to the negative control IgG1 control (Table 16).
The ability of an antibody of the present invention to block binding of human OX40 to OX40L may be measured by flow cytometry.
Method 1:
0.2×106 CHO cells expressing human OX40 prepared as described in the above Example 3 are incubated with the experimental antibody (100 nM) for 30 min in PBS 0.1% BSA on ice. Cells are then washed 3×, and are incubated with OX40L-hFc (obtained form AcroBiosystems) (˜10 μg/ml) linked with NHS-Fluorescein (Promega) in PBS 0.1% BSA for 30 min on ice (protected from light). Cells are washed 3×. Flow cytometry is performed on an Accuri C6 system (BD Biosciences) and MFIs are calculated on the C6 software.
In the experiment performed by the above assay, ADI-20048, ADI-20051, ADI-20065, ADI-20066, ADI-20078, ADI-20096, ADI-20112, ADI-20113 and ADI-20118 (IgG1 format expressed in yeast) blocked human OX40L-FITC binding to different levels, with only the FITC signal blocking of ADI-20051 is slightly stronger than that of OX40L, with an MFI value of 17,225, compared with 19,344. ADI-20048, ADI-20065, ADI-20066, ADI-20078, ADI-20096, ADI-20112, ADI-20113 and ADI-20118, show higher MFI values than OX40L, at 34,342, 33,687, 32,813, 28,112, 31,917, 22,525, 24,020.5, and 26,580.5, respectively (Table 17).
Method 2:
OX40L fused to murine Fc (OX40L-mFc, obtained from AcroBiosystems) was also used followed by anti-murine FC-FITC secondary antibody (Biolegend), using the staining methods, as described in Method 1. Flow cytometry is performed on an Accuri C6 system (BD Biosciences) and MFIs are calculated on the C6 software.
In experiments performed as described in the above assay, ADI-23515-g2 and ADI-20112-g1 (in IgG2 and IgG1 isoforms, respectively, and expressed in CHO cells) although blocked human OX40L fused to mouse Fc (60 μg/ml) binding to OX40 on CHO cells, showing lower blocking activity compared to Pogalizumab, and at similar levels to OX40L (
1. Plate Bound Antibody T Cell Activation Assay
T cell Isolation is performed as per manufacturer's instructions in the Untouched CD4+ T cell isolation kit (Invitrogen). A magnet fitted with a 1.5 ml tube rack is used to remove unwanted magnetic beads (QIAGEN).
The agonist activity of anti-OX40 antibodies of the present invention may be evaluated by measuring the release of inflammatory cytokines by T cells after T cell activation. 96-well flat-bottom plates (Corning) were coated with suboptimal anti-CD3 (0.25 μg/ml) antibody (Biolegend), and anti-OX40 (6 μg/ml) test antibodies at 37 degrees Celsius for 2 hours or overnight at 4 degrees Celsius. After washing, 100,000 CD4+ primary T cells were added into each well in a total of 200 μl media with 2 μg/ml anti-CD28 antibody (Biolegend) in solution. After 5 days, IL-2 secretion levels were tested by ELISA (Ready-SET-Go!; eBioscience).
In experiments performed as described in the above assay, ADI-20048, ADI-20051, ADI-20065, ADI-20066, ADI-20078, ADI-20096, ADI-20112, ADI-20113 and ADI-20118 in IgG1 format generated in yeast cells, increased IL-2 and IFNg secretion over the IgG4 control, with up to 100-fold increase in IL-2 levels and ˜3-fold difference in IFNg levels in the T cells from two different healthy donors (Table 18).
2. Soluble Antibody T Cell Activation Assay
Assay 1:
The agonist activity of anti-OX40 antibodies of the present invention may be evaluated by measuring the release of inflammatory cytokines by T cells after T cell activation. 100,000 CD4+ T cells are stimulated by PHA (10 μg/ml, Sigma) and 200 nM anti-OX40 candidate antibodies for 5 days. IL-2 secretion is tested by ELISA (Ready-SET-Go!; eBioscience).
In experiments performed as described in the above assay, ADI-20048, ADI-20051, ADI-20065, ADI-20066, ADI-20078, ADI-20096, ADI-20112, ADI-20113 and ADI-20118 in IgG1 format generated in yeast cells, increased IL-2 secretion over the IgG4 control, with up to 10-fold increases in IL-2 levels from six different healthy donors (Table 19).
Assay 2:
The agonist activity of anti-OX40 antibodies of the present invention may be evaluated by measuring the release of inflammatory cytokines by T cells after T cell activation. 100,000 CD4+ T cells were stimulated with anti-CD3 antibody (Biolegend) (at the concentration of 1 μg/ml), anti-CD28 antibodies (Biolegend) (at the concentration of 2 μg/ml) and 10 μg/ml, 20 μg/ml or 40 μg/ml anti-OX40 antibodies for 5 days. IL-2 secretion is tested by ELISA (Ready-SET-Go!; eBioscience).
In experiments performed as described in the above assay, anti-OX40 antibody ADI-2005720051, ADI-20078, ADI-20112 and ADI-20118, in IgG1 format expressed by HEK293 cells, increased IL-2 secretion over the IgG1 control at 20 ug/ml concentrations or above (Table 20), and also anti-OX40 antibody in IgG2 format expressed by HEK293 cells at all concentrations (Table 21).
Assay 3:
The agonist activity of anti-OX40 antibodies of the present invention may be evaluated by measuring the release of inflammatory cytokines by T cells after T cell activation. 100,000 PBMC are stimulated with PHA (5 μg/ml; Sigma) and 5 μg/ml, 10 μg/ml or 20 μg/ml anti-OX40 antibodies for 5 days before testing IL-2 secretion by ELISA (Ready-SET-Go!; eBioscience).
In experiments performed as described in the above assay, ADI-20078-g1 (IgG1 format), ADI-20078-g2 (IgG2 format), ADI-20112-g1 (IgG1 format), and ADI-20112-g2 (IgG2 format), expressed in CHO cells, increased IL-2 secretion over the IgG1 control and IgG2 controls at 5 μg/ml, 10 μg/ml, and 20 μg/ml, higher than control antibodies 11D4, Hu106-222, and pogalizumab benchmarks (
3. Luciferase Reporter T Cell Activation Assay
The agonist activity of anti-OX40 antibodies of the present invention may be evaluated by measuring the promotion of NFkB-mediated transcriptional activation in a luciferase reporter assay. Jurkat cells (US, ATCC) overexpressing human OX40 (purchased from Sino) and NFkB-luciferase constructs (NFkB promoter-luc, Promega) were activated with PHA (5 μg/ml; Sigma) or anti-CD3 (2 μg/ml; Biolegend) plus anti-CD28 (2 μg/ml; Biolegend) with anti-OX40 antibody in solution (100 nM) for 18 h, then tested after cell lysis and addition of substrate and bioluminescence measurement on a detection device (Molecular Devices) that indicates relative luciferase expression induction.
In experiments performed as described in the above assay, ADI-20048, ADI-20051, ADI-20065, ADI-20066, ADI-20078, ADI-20096, ADI-20112, ADI-20113 and ADI-20118 in IgG1 format generated in yeast cells increase luciferase expression greater than the IgG4 control, with up to 4-fold increases and 7-fold increases in signal using PHA (Sigma) or anti-CD3 (Biolegend) activation, respectively (Table 22).
In experiments performed as described in the above assay, using anti-CD3 and anti-CD28 dynabeads (Invitrogen) as an activator, ADI-20078-g2 is a human IgG2 OX40 antibody transiently expressed in CHO cells that increased luciferase expression greater than the IgG control (IgG1 and IgG2 control), ADI-20078-g1 (human IgG1 OX40 antibody expressed in CHO cells), ADI-20112-g1 (human IgG1 OX40 antibody expressed in CHO cells), ADI-20112-g2 (human IgG2 OX40 antibody expressed in CHO cells), pogalizumab and Hu106-222 (
In experiments performed as described in the above assay, ADI-20078-g2 is a human IgG2 OX40 antibody expressed in CHO cells that increases luciferase expression greater than the IgG control (IgG1 control), and ADI-23515-g2 is an affinity matured human IgG2 OX40 antibody expressed in CHO cells that has a lower EC50 value of 0.3904 nM compared to ADI-20078-g2 with an EC50 value of 5.739 nM (
In experiments performed as described in the above assay, adding Raji cells (ATCC) to provide co-stimulation signals and FcgRIIb for IgG cross-linking, ADI-20112-g1 is a human IgG1 OX40 antibody, ADI-20112-g2 is a human IgG2 OX40 antibody, ADI-20078-g1 is a human IgG1 OX40 antibody, ADI-20078-g2 is a human IgG2 OX40 antibody, all expressed in CHO cells, increased luciferase expression through OX40 activation greater than the IgG control (IgG1 control and IgG2 control), with EC50 values of 0.06051 nM, 0.2463 nM, 0.09644 nM, and 1.398 nM, respectively. ADI-20112-g1 is equivalent to or a better agonist compared with pogalizumab, Hu106-222 and 11D4 (
In experiments performed as described in the above assay, ADI-25654-g1, a human IgG1 OX40 antibody generated in CHO cells, is an affinity matured form of ADI-20112-g1, a human IgG1 OX40 antibody generated in CHO cells; and ADI-23515-g1, a human IgG1 OX40 antibody generated in CHO cells, is an affinity matured form of ADI-20078-g1, a human IgG1 OX40 antibody generated in CHO cells. ADI-25654-g1 and ADI-23515-g1 show better agonist activity with EC50 values of 0.02817 nM, and 0.1743 nM respectively, compared with ADI-20112-g1 that has an EC50 of 0.2576 nM (
4. Mixed Lymphocyte Reaction (MLR)/DC T Cell Co-Culture Assay
The agonist activity of OX40 signals by antibodies of the present invention may be evaluated by measuring the release of IL-2 during a mixed lymphocyte reaction or DC-T cell co-culture assays. 2×106 PBMC are plated per well in a 6 well tissue culture plate or T25 tissue culture flask. Cells are incubated for 2-3 hours, to allow for adherence of monocytes.
Immature myeloid moDCs are generated by culturing monocytes (1×106 cells/ml) from PBMC in X-VIVO 15 media containing 1% AB serum, 10 mM HEPES, 50 μM β-Me, IL-4 (1000 U/ml) and GM-CSF (1000 U/ml), or 25-50 ng/ml of each. After 2 days fresh medium supplemented with IL-4 and GM-CSF is added. On Day 5, cells are either frozen or maturation is induced by adding a stimulation cocktail containing rTNFa (1000 U/ml), IL-1b (5 ng/ml), IL-6 (10 ng/ml) and 1 μM PGE2 for 2 days at a cell density of 3×105 cells/ml. T cell Isolation is performed as per manufacturer's instructions in the Untouched CD4+ T cell isolation kit (Invitrogen). A magnet fitted with a 1.5 ml tube rack is used to remove unwanted magnetic beads (QIAGEN).
100,000-200,000 isolated T cells (from donor) are mixed with 10,000-20,000 allogeneic moDCs (as above) in a total volume of 200 μl in 96-round bottom tissue culture plates for 4-5 days at 37° C. SEE (1 ng/ml) was added to increase T cell activation. Test antibodies are added at the beginning of the MLR and incubated throughout the culture period. Detection of IL-2 is carried out as per manufacturer's instructions (eBioscience). OD measurements are determined on a Multiskan FC system (Thermo).
In experiments performed as described in the above assay, ADI-23515-g2, a human antibody in IgG2 format expressed in CHO cells, and ADI-20112-g1, a human IgG1 antibody expressed in CHO cells, increased IL-2 when using at ˜13.3 μg/ml, ˜4.4 μg/ml and ˜1.48 μg/ml concentrations, equally or better than pogalizumab, 11D4, Hu106-222, and tavolixizumab. Pogalizumab had poor agonist activity at all concentrations, and 40 μg/ml of 11D4, Hu106-222, tavolixizumab, ADI-23515-g1, and ADI-20112-g1 showed lower agonist activity at the highest concentration of OX40 antibody of 40 μg/ml (
The blocking activity of anti-OX40 antibodies of the present invention may be evaluated by measuring the propensity of the antibody in blocking OX40L-mediated T cell activation of OX40. Activation property of T cells are evaluated by NFkB mediated transcription activity (c.f., Example 5). Jurkat cells (US ATCC) overexpressing human OX40 and NFkB-luciferase constructs (NFkB promoter-luc, US Promega) were activated with anti-CD3 (2 μg/ml; Biolegend), anti-CD28 (2 μg/ml (Biolegend) and recombinant OX40L (60 μg/ml; Acro Biosystems) plus increasing concentrations of anti-OX40 antibody (ADI-0112-g1 in IgG1 format expressed in CHO cells of the present invention, ADI-23515-G2 in IgG2 format expressed in CHO cells of the present invention) and IgG4 control, Pogalizumab, OX40L (obtained AcroBiosystems) in solution for 18 h, then tested after cell lysis and addition of substrate and absorbance measurement.
Pogalizumab readily blocked OX40L-based activation at concentrations of more than about 0.08 nM or above, whereas ADI-20112-g1, a human IgG1 OX40 antibody generated in CHO cells, and ADI-23515-g2, a human IgG2 OX40 antibody generated in CHO cells, blocked OX40L-based activation at 20 nM and above (
Luciferase Reporter Based Antibody Dependent Cell-Mediated Cytotoxicity Assays
Antibody dependent cell-mediated cytotoxicity (ADCC) activity of OX40 antibodies can be measured using a luciferase reporter assay (Promega). Target cells (CHO cells expressing human OX40, prepared as above) are seeded at 1.2×106 cells/ml in 25 μl RPMI media (Gibco) containing 10% Ultra-Low IgG FBS(Sigma). 1:3 serial dilutions of 1 μg/ml antibody are made, adding 25 μL/well. 6×106 cells/ml ADCC effector cells (Promega) are seeded and incubated for 6 hours at 37° C. with 5% CO2. 75 μl luciferase assay reagent (Promega) is added and the mixtures are brought to RT for 20 minutes. The plate is centrifuged for 2 minutes at 300 g/min. 120 μl of cell supernatant is carefully transferred to Optiplates. The plate is read in luminometer. Curves are fitting and EC50 of antibody response is determined using GraphPad Prism 6.0.
In experiments performed as described in the above assay, ADI-20051, ADI-20078, ADI-20112, and ADI-20118, in IgG1 format expressed in HEK293 cells, increase luciferase expression with EC50 values of 0.3653, 0.9109, 0.7304, and 0.8867 nM, respectively (
Anti-tumour efficacy of OX40 antibodies of the invention can be studied in humanized mouse models (NOG hu-PBMC LoVo tumour model).
LoVo human colon cancer cells (ATCC #CCL-229) were cultured according to ATCC instructions (F-12K). Two million LoVo cells suspended in 0.2 mL PBS contained with 0.66 million human PBMCs were implanted in the right flank of female NOG (Beijing Vital River Laboratory Animal Technology Co.).
Tumors and body weights were measured twice a week throughout the study, and mice were euthanized when the tumors reached endpoint or when mice had >20% body weight loss. At 3 days post implantation, mice were randomized into groups of 6-7 each that the mean tumor volume estimated with digital calipers, and tumor volume in mm3 was calculated by the formula: (width)2×length/2 for each group was approximately 50 mm3.
On day 3, 7, 11, and 14 (or 15) post implantation, mice were dosed intraperitoneally (IP) with PBS, 10 mg/kg of relevant IgG isotype control (equitech-Bio), or anti-OX40 antibodies (ADI-20112-g1, human OX40 antibody in IgG1 format expressed in CHO cells or ADI-23515-g2, human OX40 antibody in IgG1 format expressed in CHO cells).
In experiments performed as described in the above assay, ADI-20112-g1, a human OX40 antibody in IgG1 format expressed in CHO cells reduces tumour volume growth compared with IgG control (equitech-Bio) (
Pharmacokinetic data was assessed following ADI-20078-IgG1 (IgG1 format, expressed in CHO cells), ADI-20078-IgG2 (IgG2 format, expressed in CHO cells), ADI-20112-IgG1 (IgG1 format, expressed in CHO cells), ADI-20112-IgG2 (IgG2 format, expressed in CHO cells) i.v. doses of 10 mg/kg antibodies to female Balb/C mice. The dose volume was injected into the mouse based on body weight.
Timing for blood collection begun at the beginning of dosing. For i.v. administration, timepoints included 0.083 hours (5 minutes) up to day 21. Blood was collected from three mice for each time point. Approximately 100 ul of blood was collected into microcentrifuge tubes. The blood samples were stored on ice for at least 10 minutes at a speed setting of 3000 RPM to obtain approximately 40-50 ul of serum.
Serum concentrations of antibodies dosed to mice were determined by immunoassay using either a plate-based sandwich ELISA method. Briefly, microtiter plate (Nunc, cat #442404) was coated with OX40 (ACRO, cat #1044-5CIS1-AF) at 1 ug/mL in 0.2 M CBS (PH9.4) at 4° C. overnight. After washing, the plate was then blocked with 5% non-fat milk for 1.5 h at ambient temperature, mice serum samples were applied to coated plates for 1.5 h at RT. Anti-OX40 antibody was used to prepare the standard curve in pooled normal mouse serum with a range of 0.315-80 ng/mL, and QC samples.
Bound anti-OX40 antibody was detected using a horseradish peroxidase-labeled goat anti-human Fc antibody (Bethyl, cat #A80-104P-84) diluted at 1:100,000 in 5% BSA in 0.05% PBST (0.05% Tween in PBS). After a wash step, the plate was developed with TMB for 10-15 min at room temperature, which was stopped after 5 min by the addition of 2 N sulfuric acid. The optical density was measured at 450 nm with a 620 nm reference wavelength subtraction, using a Thermo ELISA plate reader (Multiskan FC). Quantitation was based on a four-parameter logistic (1/Y2) regression of the prepared standard curves using Skanit Software3.1 (Thermo).
PK parameters (Cmax, AUC, t1/2, Cl, and Vss) were analyzed by PKSolver software based on a non-compartmental model with means of concentration of each group (Table 23).
In this study, MC38 (mouse intestinal cancer cells) tumor-bearing OX40 transgenic mice were used to study on the synergistic antitumor efficacy of anti-OX40 antibody ADI-20112-IgG1 (referred as ADI-20112 in this example and in
Human OX40 Transgenic Mouse
Female human OX40 transgenic mice with C57Bl/6 background (approximately 8 weeks old) were purchased from Shanghai Southern Model Biotechnology Co., Ltd. The mice were domesticated for 7 days after arrival and then the study was started.
Cell
MC38 murine colon cancer cells were purchased from Heyuan Biotechnology (Shanghai) Co., Ltd. and routinely subcultured for subsequent in vivo experiments strictly according to the instructions. The cells were collected by centrifugation, resuspended in sterile PBS and adjusted to a cell density of 5×10e6/ml. On day 0, 0.2 ml of the cell suspension was subcutaneously inoculated (1×10 6 cells/mouse) into the right abdomen region of human OX40 transgenic mice to establish a MC38-hOX40 tumor-bearing mouse model.
Administration
Six days after tumor cell inoculation, the tumor volume of each mouse was measured, and mice with a tumor volume ranging from 87.4 mm3 to 228.4 mm3 were selected and grouped according to the tumor volume on average, so that the average initial volume of each group was about 110 mm3.
The mice were divided into 7 groups (7 mice per group), and each group was intraperitoneally injected with the following doses of antibody:
Group 1 (control group): h-IgG (equitech-Bio), 10 mg/kg;
Group 2: anti-OX40 antibody (ADI-20112), 0.1 mg/kg;
Group 3: anti-OX40 antibody (ADI-20112), 1 mg/kg;
Group 4: anti-OX40 antibody (ADI-20112), 10 mg/kg;
Group 5: PD-1 antibody (Antibody C), 0.5 mg/kg;
Group 6: anti-OX40 antibody (ADI-20112) 1 mg/kg+PD-1 antibody (Antibody C) 0.5 mg/kg;
Group 7: Anti-OX40 antibody (ADI-20112) 10 mg/kg+PD-1 antibody (Antibody C) 0.5 mg/kg.
Reagent Injection
On the 6th day after inoculation, each group of mice was administered with the above 7 groups of reagents, respectively, by intraperitoneal injection at a frequency of 2 times/week for 2 weeks.
Analysis:
Tumors and body weight were measured twice a week from day 6 (before dosing) throughout the study and monitored continuously for 4 weeks. The maximum length axis (L) and the largest width axis (W) of the tumor were measured using a vernier caliper, and the tumor volume (V) was calculated as follows: V=L×W2/2. Tumor size from each group of mice was plotted against time. Analysis of variance (ANOVA) was used to determine statistical significance. P value of <0.05 was considered to be statistically significant in all analyses.
At the end of the experiment at Day 29, the mice were euthanized. The isolated tumor tissues were photographed and weighed, and the tumor weight and volume (tumor terminal volume) of each group were measured, and the relative tumor growth inhibition rate (TGI (%)) was calculated.
Result
The results of the experiment showed that after administration for 1 week, relative to group 1 (h-IgG-10 mg/kg), group 2-4 (ADI-20112-0.1 mg/kg, ADI-20112-1 mg/kg, ADI-20112-10 mg/kg) inhibited tumor growth in MC38-hOX40 tumor-bearing mice, and the tumor volume and tumor weight decreased, and tumor growth also slowed down, in a dose-dependent manner. The test results also showed that the anti-OX40 antibody ADI-20112 of the present invention exhibited a good synergistic antitumor effect with the anti-PD-1 mAb antibody C. The specific results are as follows.
As shown in
When the experiment was terminated after 29 days, in some experimental groups, the mouse tumor completely disappeared. Table 24 below summarizes the number of mice in each group with complete tumor disappearance.
As shown in the above table, in group 5 (antibody C-0.5 mg/kg group), 3 mice had complete tumor disappearance; 6 mice in group 6 (20112-1 mg/kg+antibody C-0.5 mg/kg group) had complete tumor disappearance; 7 mice in group 7 (20112-10 mg/kg+antibody C-0.5 mg/kg) had complete tumor disappearance.
In addition, the present invention also calculated the relative tumor growth inhibition rate in mice of each group at the end of the experiment on Day 29. The relative tumor growth inhibition rate is calculated as follows:
Relative tumor growth inhibition rate TGI (%)=100%×(Tvolcontrol−Tvoltreated)/(Tvolcontrol−Tvolpredose)
wherein Tvolcontrol−Tvoltreated=tumor terminal volume after administration in the control group−tumor terminal volume after administration in the drug-administered group; Tvolcontrol−Tvolpredose=tumor terminal volume after administration in the control group−tumor volume before administration in the control group (Tumor volume before administration on Day 6).
The calculation results are shown in Table 25 below:
#indicated in this statistic analysis, n = 6(20112-0.1 group, mice No. 3 died due to tumor rupture)
The results of the experiment showed in group 6 (ADI-20112-1 mg/kg+antibody C-0.5 mg/kg group) and group 7 (ADI-20112-10 mg/kg+antibody C-0.5 mg/kg group), tumor growth inhibition rate was 102% and 104%, respectively, and the anti-OX40 antibody showed synergistic anti-tumor effects in combination with the anti-PD1 antibody.
| Number | Date | Country | Kind |
|---|---|---|---|
| 201710185400.8 | Mar 2017 | CN | national |
| Filing Document | Filing Date | Country | Kind |
|---|---|---|---|
| PCT/CN2018/080315 | 3/23/2018 | WO |
| Publishing Document | Publishing Date | Country | Kind |
|---|---|---|---|
| WO2018/177220 | 10/4/2018 | WO | A |
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| Number | Date | Country | |
|---|---|---|---|
| 20200140562 A1 | May 2020 | US |
