Claims
- 1. A method of inactivating a prenylation enzyme, comprising the step of:
contacting a prenylation enzyme with an a-dicarbonyl compound having a formula: R1—(C═O)—(C═O)—R2 (Formula I) wherein R1 is selected from the group consisting of hydrogen, alkyl, alkenyl, alkynyl, and aryl; and wherein R2 is selected from the group consisting of hydrogen, alkyl, alkenyl, alkynyl, and aryl; and whereby the activity of the prenylation enzyme is reduced by at least 50%.
- 2. The method of claim 1 wherein the activity of the prenylation enzyme is reduced by at least 75%.
- 3. The method of claim 1 wherein the activity of the prenylation enzyme is reduced by at least 90%.
- 4. The method of claim 1 wherein the activity of the prenylation enzyme is reduced by at least 95%.
- 5. The method of claim 1 wherein the a-dicarbonyl compound is phenylglyoxal (PGO).
- 6. The method of claim 1 wherein the α-dicarbonyl compound is 2-oxododecanal.
- 7. The method of claim 1 wherein the a-dicarbonyl compound is a 2-oxoaldehyde.
- 8. The method of claim 1 wherein the α-dicarbonyl compound is an alkanedione.
- 9. The method of claim 1 wherein R1=H.
- 10. The method of claim 1 wherein R1=CH3.
- 11. The method of claim 9 wherein R2═H—(CH2)m— wherein m=0-25.
- 12. The method of claim 10 wherein R2═H—(CH2)m wherein m=0-25.
- 13. The method of claim 9 wherein n=1-10.
- 14. The method of claim 10 wherein n=1-15.
- 15. The method of claim 9 wherein n=10.
- 16. The method of claim 10 wherein n=11.
- 17. The method of claim 9 wherein R2 is a linear alkene.
- 18. The method of claim 10 wherein R2 is a branched alkene.
- 19. The method of claim 1 wherein the prenylation enzyme is in a cell-free system.
- 20. The method of claim 1 wherein the enzyme is in a neoplastic cell.
- 21. A method of screening compounds as anti-tumor agents comprising:
contacting a test compound with a prenylation enzyme, wherein the test compound has a formula: R1—(C═O)—(C═O)—R2 (Formula I) wherein R1 is selected from the group consisting of hydrogen, alkyl, alkenyl, alkynyl, and aryl; and R2 is selected from the group consisting of hydrogen, alkyl, alkenyl, alkynyl, and aryl; measuring prenylation activity of the enzyme, wherein a test compound which reduces prenylation activity at least 50% is a candidate anti-tumor agent.
- 22. The method of claim 21 wherein the activity of the prenylation enzyme is reduced by at least 75%.
- 23. The method of claim 21 wherein the activity of the prenylation enzyme is reduced by at least 90%.
- 24. The method of claim 21 wherein the activity of the prenylation enzyme is reduced by at least 95%.
- 25. The method of claim 21 wherein the prenylation enzyme is in a cell-free system when contacted with the test compound.
- 26. The method of claim 21 wherein the enzyme is in a neoplastic cell when contacted with the test compound.
- 27. The method of claim 21 wherein a natural substrate of the enzyme is added to compete with the test compound, wherein such competition indicates specificity of the test compound for the prenylation enzyme.
- 28. The method of claim 21 wherein the prenylation enzyme is protein farnesyl transferase (FTase).
- 29. The method of claim 21 wherein the prenylation enzyme is protein geranylgeranyl transferase (GGTase).
- 30. The method of claim 27 wherein the natural substrate is farnesyl pyrophosphate.
- 31. The method of claim 27 wherein the natural substrate is geranylgeranyl pyrophosphate.
- 32. A method of inactivating a prenylation enzyme, comprising the step of:
contacting a prenylation enzyme with an a-dicarbonyl compound having a formula: R1—(C═O)—(C═O)-L-(C═O)—(C═O)—R2 (Formula II) wherein R1, R2, and L are independently selected from the group consisting of hydrogen, alkyl, alkenyl, alkynyl, and aryl; whereby the activity of the prenylation enzyme is reduced by at least 50%.
- 33. The method of claim 32 wherein the activity of the prenylation enzyme is reduced by at least 75%.
- 34. The method of claim 32 wherein the activity of the prenylation enzyme is reduced by at least 90%.
- 35. The method of claim 32 wherein the activity of the prenylation enzyme is reduced by at least 95%.
- 36. The method of claim 32 wherein the α-dicarbonyl compound is a bis(α-oxoaldehyde).
- 37. The method of claim 32 wherein the a-dicarbonyl compound is 2,11-dioxododecanedial.
- 38. The method of claim 32 wherein the α-dicarbonyl compound is 4,4′-biphenyldiglyoxaldehyde.
- 39. The method of claim 32 wherein R1=H.
- 40. The method of claim 32 wherein R1=CH3.
- 41. The method of claim 39 wherein R2═H—(CH2)m— wherein m=0-25.
- 42. The method of claim 40 wherein R2═H—(CH2)m— wherein m=0-25.
- 43. The method of claim 39 wherein L=—(CH2)n— and n=1-10.
- 44. The method of claim 40 wherein L=—(CH2)n— and n=1-15.
- 45. The method of claim 39 wherein L=—(CH2)n— and n=10.
- 46. The method of claim 40 wherein L=—(CH2)n— and n=11.
- 47. The method of claim 39 wherein R2 is a linear alkene.
- 48. The method of claim 40 wherein R2 is a branched alkene.
- 49. The method of claim 32 wherein the prenylation enzyme is in a cell-free system.
- 50. The method of claim 32 wherein the enzyme is in a neoplastic cell.
- 51. A method of screening compounds as anti-tumor agents comprising:
contacting a test compound with a prenylation enzyme, wherein the test compound has a formula: R1—(C═O)—(C═O)-L-(C═O)—(C═O)—R2 (Formula II) wherein R1, R2, and L are independently selected from the group consisting of hydrogen, alkyl, alkenyl, alkynyl, and aryl; and measuring prenylation activity of the enzyme, wherein a test compound which reduces prenylation activity at least 50% is a candidate anti-tumor agent.
- 52. The method of claim 51 wherein the activity of the prenylation enzyme is reduced by at least 75%.
- 53. The method of claim 51 wherein the activity of the prenylation enzyme is reduced by at least 90%.
- 54. The method of claim 51 wherein the activity of the prenylation enzyme is reduced by at least 95%.
- 55. The method of claim 51 wherein the prenylation enzyme is in a cell-free system when contacted with the test compound.
- 56. The method of claim 51 wherein the enzyme is in a neoplastic cell when contacted with the test compound.
- 57. The method of claim 51 wherein a natural substrate of the enzyme is added to compete with the test compound, wherein such competition indicates specificity of the test compound for the prenylation enzyme.
- 58. The method of claim 51 wherein the prenylation enzyme is protein farnesyl transferase (FTase).
- 59. The method of claim 51 wherein the prenylation enzyme is protein geranylgeranyl transferase (GGTase).
- 60. The method of claim 57 wherein the natural substrate is farnesyl pyrophosphate.
- 61. The method of claim 57 wherein the natural substrate is geranylgeranyl pyrophosphate.
- 62. A method of inactivating a prenylation enzyme, comprising the step of:
contacting a prenylation enzyme with an a-dicarbonyl compound having a formula: A-L-D-R (Formula III) wherein A is selected from the group consisting of an anionic group, a group that can spontaneously become anionic at physiological pH, and a group that can enzymatically become anionic at physiological pH; wherein L and R are independently selected from the group consisting of hydrogen, alkyl, alkenyl, alkynyl, and aryl, and wherein D is a dicarbonyl functional group or a masked form of said group, whereby the activity of the prenylation enzyme is reduced by at least 50%.
- 63. The method of claim 62 wherein the activity of the prenylation enzyme is reduced by at least 75%.
- 64. The method of claim 62 wherein the activity of the prenylation enzyme is reduced by at least 90%.
- 65. The method of claim 62 wherein the activity of the prenylation enzyme is reduced by at least 95%.
- 66. The method of claim 62 wherein the linker group has an affinity for the prenylation enzyme.
- 67. The method of claim 62 wherein D is a masked form of a dicarbonyl functional group.
- 68. The method of claim 62 wherein D is an acetal group.
- 69. The method of claim 62 wherein D is a ketal group.
- 70. The method of claim 62 wherein A is a CO2H group which becomes anionic by deprotonation.
- 71. The method of claim 62 wherein A is an ester which is hydrolyzed by an esterase to form a carboxylic acid group.
- 72. The method of claim 62 wherein the α-dicarbonyl compound is a camphorquinone sulfonamide.
- 73. The method of claim 62 wherein the α-dicarbonyl compound is 5,9-dimethyl-8-decene-2,3-dione.
- 74. The method of claim 62 wherein the α-dicarbonyl compound is dehydroascorbic acid 6-palmitate.
- 75. The method of claim 62 wherein the α-dicarbonyl compound is 4,4′-biphenyldiglyoxaldehyde.
- 76. The method of claim 62 wherein the α-dicarbonyl compound is 2,3-pentanedione.
- 77. The method of claim 62 wherein the prenylation enzyme is in a cell-free system.
- 78. The method of claim 62 wherein the enzyme is in a neoplastic cell.
- 79. A method of screening compounds as anti-tumor agents comprising:
contacting a test compound with a prenylation enzyme, wherein the test compound has a formula: A-L-D-R (Formula III) wherein A is selected from the group consisting of an anionic group, a group that can spontaneously become anionic at physiological pH, and a group that can enzymatically become anionic at physiological pH; wherein L and R are independently selected from the group consisting of hydrogen, alkyl, alkenyl, alkynyl, and aryl; and wherein D is a dicarbonyl functional group or a masked form of said group,
measuring prenylation activity of the enzyme, wherein a test compound which reduces prenylation activity at least 50% is a candidate anti-tumor agent.
- 80. The method of claim 79 wherein the activity of the prenylation enzyme is reduced by at least 75%.
- 81. The method of claim 79 wherein the activity of the prenylation enzyme is reduced by at least 90%.
- 82. The method of claim 79 wherein the activity of the prenylation enzyme is reduced by at least 95%.
- 83. The method of claim 79 wherein the prenylation enzyme is in a cell-free system when contacted with the test compound.
- 84. The method of claim 79 wherein the enzyme is in a neoplastic cell when contacted with the test compound.
- 85. The method of claim 79 wherein a natural substrate of the enzyme is added to compete with the test compound, wherein such competition indicates specificity of the test compound for the prenylation enzyme.
- 86. The method of claim 79 wherein the prenylation enzyme is protein farnesyl transferase (FTase).
- 87. The method of claim 79 wherein the prenylation enzyme is protein geranylgeranyl transferase (GGTase).
- 88. The method of claim 85 wherein the natural substrate is farnesyl pyrophosphate.
- 89. The method of claim 85 wherein the natural substrate is geranylgeranyl pyrophosphate.
- 90. A method of inhibiting growth of cancer cells, comprising the step of:
contacting a cancer cell with an a-dicarbonyl compound having a formula: R1-(C═O)—(C═O)—R2 (Formula I) wherein R1 is selected from the group consisting of hydrogen, alkyl, alkenyl, alkynyl, and aryl; and wherein R2 is selected from the group consisting of hydrogen, alkyl, alkenyl, alkynyl, and aryl; and whereby the growth of the cancer cell is inhibited.
- 91. A method of inhibiting the growth of a cancer cell, comprising the step of:
contacting a cancer cell with an α-dicarbonyl compound having a formula: R1—(C═O)—(C═O)-L-(C═O)—(C═O)—R2 (Formula II) wherein R1, L, and R2 are independently selected from the group consisting of hydrogen, alkyl, alkenyl, alkynyl, and aryl; whereby the growth of the cancer cell is inhibited.
- 92. A method of inhibiting the growth of a cancer cell, comprising the step of:
contacting a cancer cell with an a-dicarbonyl compound having a formula: A-L-D-R (Formula III) wherein A is selected from the group consisting of an anionic group, a group that can spontaneously become anionic at physiological pH, and a group that can enzymatically become anionic at physiological pH; wherein L and R are independently selected from the group consisting of hydrogen, alkyl, alkenyl, alkynyl, and aryl; and wherein D is a dicarbonyl functional group or a masked form of said group, whereby the growth of the cancer cell is inhibited.
- 93. A pharmaceutically acceptable formulation comprising:
a compound according to Formula I, Formula II, or Formula III; and a pharmaceutically acceptable excipient.
- 94. The formulation of claim 93 wherein the compound is not biphenyldiglyoxaldehyde.
- 95. A compound according to Formula I, Formula II, or Formula III, wherein said compound is not phenylglyoxal, biphenyldiglyoxaldehyde, 2-oxododecanal, or 2, 3-pentanedione.
Parent Case Info
[0001] This application claims the benefit of provisional application Serial No. 60/111,478 filed Dec. 9, 1998. The disclosure of the provisional application is expressly incorporated by reference herein.
Provisional Applications (1)
|
Number |
Date |
Country |
|
60111478 |
Dec 1998 |
US |
Divisions (1)
|
Number |
Date |
Country |
Parent |
09457476 |
Dec 1999 |
US |
Child |
10437050 |
May 2003 |
US |