Patent Application
20220323476
This invention relates to antiviral compounds and compositions useful for the treatment of acquired immunodeficiency syndrome (AIDS).
The compound EFdA (MK-8591) is a nucleoside analog known to be effective as an inhibitor of the enzyme reverse transcriptase (Current Opinion in HIV and AIDS 2018, 13, 294-299)
Certain EFdA analogs are described in a U.S. application published as US2019/185508, including phosphates, esters, carbonates, carbamates where at least one of the substitutions in the glycosyl donor ring contain a “D” atom (D=deuterium=2H).
Reverse transcriptase inhibitors can be effective in the treatment of viral infections caused by viruses where reverse transcriptase function is essential for viral replication and production of viral proteins, such as HIV (Human Immunodeficiency Virus) and HBV (Hepatitis B Virus). In the case of HIV, the virus is an RNA virus that uses reverse transcriptase to synthesize DNA reverse transcripts of the vital genome which are translated by the host to provide the viral proteins. In the case of HBV, a DNA virus, the DNA viral polymerase also has a reverse transcriptase function, generating viral DNA from a viral RNA intermediate during replication. An antiviral example of a compound that hits both HIV and HBV is lamivudine.
The invention provides, in various embodiments, (1) novel compositions of chemical matter comprising bioactive prodrugs of MK-8591 or pharmaceutically acceptable salt of these prodrugs, and (2) novel formulations of these prodrugs providing therapeutic and prophylactic treatment of patients against viral infections of viruses such as HIV and HBV, wherein inhibition of a reverse transcriptase enzyme (RNA-directed DNA polymerase) slows or blocks the viral infection. The route of administration for these treatments can include, but not limited to, oral, parenteral and implants (composition and device). The formulations of this invention provide for slow or controlled or sustained release of EFdA from these prodrugs when injected as an aqueous suspension formulation.
The invention provides, in various embodiments, a compound of Formula (I)
wherein
R1 is H or is X-Lm, wherein m=1 or 2, and wherein X-Lm is —C(═O)L, —C(═O)OL, —C(═O)NH(L), —C(═O)N(L)2, —CH(R)OC(═O)L, —C(═O)CH(R)—NH(L). —C(═O)CH(R)—N(L)2, —P(═O)(NHL)2, —P(═O)(NHL)(NL2), or —P(═O)(NL2)2, and each independently selected L is (C1-22)alkyl, (C3-22)alkenyl wherein the alkenyl can comprise 1-6 unsaturations, (C3-7)cycloalkyl, (CHR)n-phenyl wherein n=0 or 1, or —CHR—N(R)2, or R1 is —OCH(R)OP(═O)(OH)2 or R1 is a phosphate residue or its derivative residue comprising a monophosphate, a diphosphate, a triphosphate, a phosphonate, a phosphate polyester, a phosphate amidate (mono and di), a phosphorothioate, a phosphoroselenoate, or a phophoroboranoate
R is H, (C1-22)alkyl, or (C3-22)alkenyl wherein the alkenyl can comprise 1-6 unsaturations, or is (C3-7)cycloalkyl;
R2 is H or is X-Lm, or R2 is —OCH(R)OP(═O)OH)2 or R2 is a phosphate residue or its derivative residue comprising a monophosphate, a diphosphate, a triphosphate, a phosphonate, a phosphate polyester, a phosphate amidate (mono and di), a phosphorothioate, a phosphoroselenoate, or a phophoroboranoate;
excluding following combinations: (a) R1=R2=acetyl, (b) R1=R2=H, and (c) R2=H when R1 is a phosphate residue or its derivative residue comprising a monophosphate, a diphosphate, a triphosphate, a phosphonate, a phosphate polyester, a phosphate amidate (mono and di), a phosphorothioate, a phosphoroselenoate, or a phophoroboranoate;
or a pharmaceutically acceptable salt thereof.
In various embodiments, a compound of Formula (I) can be any of the specific compounds 2-51, shown in Table 1.
The invention further provides, in various embodiments, a method of inhibiting viral reverse transcriptase bioactivity, comprising contacting a virus expressing an enzyme with reverse transcriptase bioactivity with an effective amount or concentration of a compound of Formula (I).
The invention further provides, in various embodiments, a method of prophylaxis of viremia or treatment of a viral infection in a patient wherein inhibition of a reverse transcriptase is medically indicated, comprising administering to the patient an effective amount or concentration of a compound of Formula (I). More specifically, the compound of Formula (I) can be administered in a formulation that provides for slow or controlled or sustained release of EFdA from these prodrugs. More specifically, the compound of Formula (I) can be formulated as aqueous suspension, solutions, and can be encapsulated in particles for slow-release including PLGA and those known in the art. More specifically, the viral infection can be caused by HIV or HBV. The routes of administration for these prodrugs can include, but not limited to, oral, parenteral and implants (drug delivery composition and device). In the method for the treatment or prevention of the viral infection, the method may further comprise an additional anti-HIV and/or anti-HBV agent including but not limited to, cabotegravir, dolutegravir, doravirine, elvitegravir, lersiverine, tenofovir disoproxil fumarate, tenofovir alafenamide fumarate or lamivudine.
1H NMR (400 MHz, DMSO-d6) δ 8.34 (s, 1H), 7.96 (s, 1H), 7.87 (s, 1H), 6.35 (t, J = 6.6, 1H), 5.68 (t, J = 5.6 Hz, 1H), 4.40 (dd, J = 11.9, 1.5 Hz, 1H), 4.21 (d, J = 10.4 Hz, 1H), 3.81 (s, 1H), 3.18 (dt, J = 13.6, 6.8 Hz, 1H), 2.69-2.57 (m, 2H), 1.2- 1.1 (m, 6H), 1.08-0.98 (m, 6H). MS-ESI: m/z 434.49 observed (M + H)+ Anal calcd for C20H24FN5O5: C, 55.42; H, 5.58; N, 16.16. Found: C, 55.48; H, 5.73; N, 15.94 Aqueous solubility (pH 7.4): 0.028 mg/mL
1H NMR (400 MHz, DMSO-d6) δ 8.35 (s, 1H), 7.91 (d, J = 39.8 Hz, 2H), 6.35 (t, J = 6.8 Hz, 1H), 5.73 (t, J = 6.5 Hz, 1H), 4.38 (dd, J = 11.8, 2.5 Hz, 1H), 4.24 (dd, J = 11.7, 2.5 Hz, 1H), 3.81 (s, 1H), 3.20 (dt, J = 13.5, 6.8 Hz, 1H), 2.61 (dt, J = 13.2, 6.6 Hz, 1H), 2.29 (ddd, J = 8.3, 5.6, 2.6 Hz, 1H), 2.13 (tt, J = 8.9, 5.9 Hz, 1H), 1.72-1.31 (m, 8H), 0.88 (td, J = 2.3 Hz, 6H), 0.80-0.66 (m, 6H). MS-ESI: m/z 490.56 observed (M + H)+ Aqueous solubility (pH 7.4): <0.002 mg/mL
1H NMR (400 MHz, DMSO-d6) δ 8.34 (s, 1H), 7.92 (d, J = 36.1 Hz, 2H), 6.34 (t, J = 6.8 Hz, 1H), 5.68 (t, J = 6.2 Hz, 1H), 4.39 (dt, J = 11.6, 1.8 Hz, 1H), 4.21 (dd, J = 11.6, 2.4 Hz, 1H), 3.81 (s, 1H), 3.18 (dt, J = 13.9, 6.9, 1H), 2.90-2.78 (m, 1H), 2.74-2.57 (m, 2H), 1.93-1.44 (m, 16H). MS-ESI: m/z 486.44 observed (M + H)+
1H NMR (400 MHz, DMSO-d6) δ 8.31 (s, 1H), 7.93 (d, J = 37.3 Hz, 2H), 7.39-7.12 (m, 10H), 6.35 (t, J = 6.7 Hz, 1H), 5.71 (t, J = 6.0 Hz, 1H), 4.41 (d, J = 11.7 Hz, 1H), 4.25 (d, J = 11.3 Hz, 1H), 3.88-3.71 (m, 3H), 3.63 (q, J = 15.8 Hz, 2H), 3.11 (dt, J = 14.0, 7.0 Hz, 1H), 2.63 (dt, J = 12.5, 6.4 Hz, 1H). MS-ESI: m/z 530.52 observed (M + H)+ Aqueous solubility (pH 7.4): <0.002 mg/mL
1H NMR (400 MHz, DMSO-d6) δ 8.26 (s, 1H), 7.93 (d, J = 34.8 Hz, 2H), 7.38-7.13 (m, 10H), 6.35-6.25 (m, 1H), 5.59 (t, J = 6.3 Hz, 1H), 4.38 (d, J = 11.8 Hz, 1H), 4.09 (d, J = 11.4 Hz, 1H), 3.88 (q, J = 7.0 Hz, 1H), 3.70 (q, J = 7.1 Hz, 1H), 3.48 (s, 1H), 3.04 (dt, J = 14.3, 7.0 Hz, 1H), 2.61- 2.53 (m, 1H), 1.47 (d, J = 7.4 Hz, 3H), 1.28 (d, J = 7.3 Hz, 3H). MS-ESI: m/z 558.65 observed (M + H)+
1H NMR (400 MHz, DMSO-d6) δ 8.38 (s, 1H), 8.09 (dt, J = 8.6, 1.4 Hz, 2H), 8.02-7.83 (m, 4H), 7.76-7.68 (m, 1H), 7.66 (td, J = 7.4, 1.5 Hz, 1H), 7.59 (td, J = 7.6, 7.1, 1.7 Hz, 2H), 7.53-7.44 (m, 2H), 6.54 (t, J = 6.8 Hz, 1H), 6.16-6.08 (m, 1H), 4.72 (d, J = 11.6 Hz, 1H), 4.59 (d, J = 11.5 Hz, 1H), 3.84 (s, 1H), 3.41-3.32 (m, 1H), 2.85 (dt, J = 13.4, 6.3 Hz, 1H). MS-ESI: m/z 502.41 observed (M + H)+
1H NMR (400 MHz, Chloroform-d) δ 8.02 (s, 1H), 6.39 (t, J = 6.4 Hz, 1H), 5.64 (t, J = 6.2 Hz, 1H), 5.49-5.25 (m, 24H), 4.50 (d, J = 12.0 Hz, 1H), 4.40 (d, J = 12.2 Hz, 1H), 3.00 (dt, J = 13.6, 6.7 Hz, 1H), 2.90-2.66 (m, 21H), 2.53-2.30 (m, 10H), 2.07 (p, J = 7.3 Hz, 5H), 0.97 (t, J = 7.5 Hz, 6H). MS-ESI: m/z 457.23 observed (M/2 + H)+
1H NMR (400 MHz, Chloroform-d) δ 7.92 (s, 1H), 6.40 (t, J = 6.4 Hz, 1H), 5.76 (brs, 2H), 5.65 (dd, J = 7.1, 5.3 Hz, 1H), 4.49 (d, J = 12.0 Hz, 1H), 4.38 (d, J = 12.1 Hz, 1H), 2.99 (dt, J = 13.5, 6.7 Hz, 1H), 2.75-2.64 (m, 2H), 2.41 (t, J = 7.5 Hz, 2H), 2.34 (q, J = 3.8 Hz, 1H), 1.71-1.57 (m, 9H), 1.41- 1.17 (m, 48H), 0.88 (t, J = 6.8 Hz, 6H). MS-ESI: m/z no signal observed (M + H)+
1H NMR (400 MHz, DMSO-d6) δ 8.34 (s, 1H), 7.91 (d, J = 30.8 Hz, 2H), 6.34 (t, J = 6.9 Hz, 1H), 5.70 (t, J = 6.4 Hz, 1H), 4.39 (d, J = 11.6 Hz, 1H), 4.22 (d, J = 11.9 Hz, 1H), 3.81-3.73 (m, 1H), 3.14 (dt, J = 14.1, 6.9 Hz, 1H), 2.60 (dt, J = 12.9, 6.0 Hz, 1H), 2.39 (td, J = 7.3, 2.4 Hz, 2H), 2.32- 2.17 (m, 2H), 1.64-1.52 (m, 2H), 1.51-1.39 (m, 2H), 1.38-1.11 (m, 48H), 0.92-0.78 (m, 6H). MS-ESI: m/z no signal observed (M + H)+
1H NMR (400 MHz, DMSO-d6) δ 8.33 (s, 1H), 7.91 (d, J = 31.7 Hz, 2H), 6.34 (t, J = 6.7 Hz, 1H), 5.70 (t, J = 6.3 Hz, 1H), 4.40 (d, J = 11.6 Hz, 1H), 4.21 (d, J = 11.6Hz, 1H), 3.82-3.78 (m, 1H), 3.14 (dt, J = 13.8 6.9 Hz, 1H), 2.61 (dt, J = 13.2, 6.2 Hz, 1H), 2.39 (td, J = 7.4, 2.9 Hz, 2H), 2.32- 2.15 (m, 2H), 1.63-1.51 (m, 2H), 1.50-1.37 (m, 2H), 1.35-1.13 (m, 12H), 0.91-0.76 (m, 6H). MS-ESI: m/z 518.25 observed (M + H)+
1H NMR (400 MHz, DMSO-d6) δ 8.35 (s, 1H), 7.93 (d, J = 35.7 Hz, 2H), 6.32 (t, J = 7.2 Hz, 1H), 5.64-5.50 (m, 2H), 3.73-3.66 (m, 2H), 3.66- 3.55 (m, 1H), 3.01 (dt, J = 14.4, 7.3 Hz, 1H), 2.67- 2.57 (m, 1H), 2.55-2.51 (m, 1H), 1.16 (ddd, J = 11.3, 7.1, 1.7 Hz, 6H). MS-ESI: m/z 364.53 observed (M + H)+
1H NMR (400 MHz, Methanol-d4) δ 8.30 (s, 1H), 6.45 (t, J = 7.1 Hz, 1H), 5.70 (dd, J = 6.8, 3.3 Hz, 1H), 3.94-3.80 (m, 2H), 3.21-3.17 (m, 1H), 3.03 (dt, J = 14.1, 7.3 Hz, 1H), 2.90 (p, J = 8.3 Hz, 1H), 2.63 (ddt, J = 12.4, 5.8, 2.7 Hz, 1H), 2.04- 1.87 (m, 4H), 1.79-1.60 (m, 4H). MS-ESI: m/z no signal observed (M + H)+
1H NMR (400 MHz, DMSO-d6) δ 8.35 (s, 1H), 7.93 (d, J = 35.1 Hz, 2H), 7.40-7.20 (m, 5H), 6.33 (t, J = 7.0 Hz, 1H), 5.59 (t, J = 6.3 hz, 2H), 3.85-3.71 (m, 2H), 3.69 (dd, J = 11.8, 5.6 Hz, 1H), 3.65-3.63 (m, 1H), 3.59 (dd, J = 11.9, 7.0 Hz, 1H), 3.01 (dt, J = 14.4, 7.3 Hz, 1H), 2.58- 2.52 (m, 1H). MS-ESI: m/z 412.43 observed (M + H)+
1H NMR (400 MHz, DMSO-d6) δ 8.34 (s, 1H), 7.92 (s, 2H), 7.41-7.23 (m, 5H), 6.30 (t, J = 7.0 Hz, 1H), 5.59-5.49 (m, 2H), 3.87 (q, J = 7.1 Hz, 1H), 3.64 (dd, J = 11.9, 5.4 Hz, 1H), 3.57-3.47 (m, 1H), 3.01 (dt, J = 14.2, 7.2 Hz, 1H), 2.58- 2.54 (m, 1H), 1.49 (d, J = 7.2 Hz, 3H). MS-ESI: m/z 426.56 observed (M + H)+
1H NMR (400 MHz, DMSO-d6) δ 8.39 (s, 1H), 8.11-8.04 (m, 2H), 7.94 (d, J = 35.1 Hz, 2H), 7.71 (dddd, J = 8.2, 7.3, 2.7, 1.3 Hz, 1H), 7.62- 7.51 (m, 2H), 6.45 (t, J = 7.2 Hz, 1H), 5.87-5.75 (m, 1H), 5.71-5.61 (m, 1H), 3.82-3.63 (m, 3H), 3.13 (dt, J = 14.2, 7.1 Hz, 1H), 2.77-2.65 (m, 1H). MS-ESI: m/z 398.47 observed (M + H)+
1H NMR (400 MHz, Methanol-d4) δ 8.29 (s, 1H), 6.49-6.41 (m, 1H), 5.73 (dd, J = 6.9, 3.4 Hz, 1H), 3.90 (d, J = 12.1 Hz, 1H), 3.84 (d, J = 12.1 Hz, 1H), 3.17 (s, 1H), 3.03 (dt, J = 14.4, 7.3 Hz, 1H), 2.63 (ddd, J = 13.8, 6.2, 3.4 Hz, 1H), 2.46 (t, J = 7.5 Hz, 2H), 1.75-1.57 (m, 3H), 1.33-1.28 (m, 25H), 0.92 (t, J = 6.7 Hz, 3H). MS-ESI: m/z no signal observed (M + H)+
1H NMR (400 MHz, DMSO-d6) δ 8.35 (s, 1H), 7.93 (d, J = 38.4 Hz, 2H), 6.31 (t, J = 7.2 Hz, 1H), 5.63-5.54 (m, 2H), 3.75-3.64 (m, 2H), 3.60 (dd, J = 11.9, 7.1 Hz, 1H), 3.00 (dt, J = 14.4, 7.3 Hz, 1H), 2.55-2.51 (m, 1H), 2.46-2.31 (m, 2H), 1.64-1.50 (m, 2H), 1.36-1.16 (m, 24H), 0.89- 0.81 (m, 3H). MS-ESI: m/z 532.74 observed (M + H)+
1H NMR (400 MHz, DMSO-d6) δ 8.35 (s, 1H), 7.93 (d, J = 37.5 Hz, 2H), 6.31 (t, J = 7.2 Hz, 1H), 5.64-5.54 (m, 2H), 3.74-3.65 (m, 2H), 3.60 (dd, J = 11.9, 7.0 Hz, 1H), 3.00 (dt, J = 14.2 7.2 Hz, 1H), 2.56-2.51 (m, 1H), 2.46-2.31 (m, 2H), 1.64-1.50 (m, 2H), 1.37-1.21 (m, 6H), 0.92- 0.80 (m, 3H). MS-ESI: m/z 406.55 observed (M + H)+
1H NMR (400 MHz, DMSO-d6) δ 8.35 (s, 1H), 7.93 (d, J = 31.1 Hz, 2H), 6.33 (t, J = 7.0 Hz, 1H), 5.59 (dd, J = 6.6, 3.8 Hz, 2H), 3.74-3.65 (m, 2H), 3.61 (dd, J = 11.9, 6.8 Hz, 1H), 3.20 (d, J = 5.3 Hz, 1H), 3.09-2.99 (m, 4H), 2.00-1.92 (m, 1H), 0.93 (d, J = 6.7 Hz, 3H), 0.88 (d, J = 6.7 Hz, 3H). MS-ESI: m/z 393.52 observed (M + H)+
1H NMR (400 MHz, DMSO-d6) δ 8.28 (s, 1H), 7.86 (s, 2H), 6.24 (dd, J = 8.0, 4.0 Hz, 1H), 5.80 (d, J = 5.4 Hz, 1H), 4.70 (q, J = 7.4 Hz, 1H), 4.39 (d, J = 11.7 Hz, 1H), 4.09 (d, J = 11.7 Hz, 1H), 3.65 (d, J = 1.0 Hz, 1H), 2.77 (ddd, J = 12.1 7.2, 4.0 Hz, 1H), 2.47-2.43 (m, 1H), 1.94 (s, 3H). MS-ESI: m/z 336.42 observed (M + H)+
1H NMR (499 MHz, DMSO-d6) δ 8.26 (s, 1H), 7.84 (s, 2H), 6.24 (dd, J = 8.0 4.0 Hz, 1H), 5.78 (d, J = 5.5 Hz, 1H), 5.35-6.26 (m, 2H), 4.74- 4.66 (m, 1H), 4.41 (d, J = 11.7 Hz, 1H), 4.09 (d, J = 11.8 Hz, 1H), 3.62 (s, 1H), 2.78 (ddd, J = 13.4, 7.3, 4.0 Hz, 1H), 2.18 (ddt, J = 30.6, 15.6, 7.8 Hz, 2H), 1.96 (p, J = 6.2 Hz, 5H0, 1.45-1.35 (m, 2H), 1.31-1.14 (m, 19H), 0.87-0.82 (m, 3H). MS-ESI: m/z no signal observed (M + H)+
1H NMR (400 MHz, DMSO-d6) δ 8.27 (s, 1H), 7.84 (s, 2H), 6.23 (dd, J = 8.0, 3.9 Hz, 1H), 5.79 (d, J = 4.9 Hz, 1H), 4.70 (q, J = 7.3 Hz, 1H), 4.41 (d, J = 11.7 Hz, 1H), 4.08 (d, J = 11.7 Hz, 1H), 3.63 (s, 1H), 2.78 (ddd, J = 13.3, 7.3, 4.0 Hz, 1H), 2.44 (d, J = 8.0 Hz, 1H), 2.28-2.06 (m, 2H), 1.45- 1.34 (m, 2H), 1.29-1.11 (m, 25H), 0.85 (t, J = 6.6 Hz, 3H). MS-ESI: m/z no signal observed (M + H)+
1H NMR (500 MHz, DMSO-d6) δ 8.26 (s, 1H), 7.82 (s, 2H), 6.24 (dd, J = 8.0, 4.0 Hz, 1H), 5.77 (d, J = 5.4 Hz, 1H), 4.70 (td, J = 7.7, 5.4, Hz, 1H), 4.41 (d, J = 11.8 Hz, 1H), 4.09 (d, J = 11.8 Hz, 1H), 3.61 (s, 1H), 2.78 (ddd, J = 13.5, 7.3, 4.0 Hz, 1H), 2.48-2.43 (m, 1H), 2.18 (ddt, J = 30.5, 15.6, 7.8 Hz, 2H), 1.46-1.35 (m, 2H), 1.29-1.13 (m, 16H), 0.85 (t, J = 6.9 Hz, 3H). MS-ESI: m/z 476.66 observed (M + H)+
1H NMR (400 MHz, DMSO-d6) δ 8.27 (s, 1H), 7.84 (s, 2H), 6.24 (dd, J = 8.0, 4.0 Hz, 1H), 5.78 (d, J = 5.4 Hz, 1H), 4.71 (td, J = 7.8, 5.5 Hz, 1H), 4.42 (d, J = 11.7 Hz, 1H), 4.09 (d, J = 11.8 Hz, 1H), 3.63 (s, 1H), 2.79 (ddd, J = 13.4, 7.3, 4.0 Hz, 1H), 2.49-2.42 (m, 1H), 2.26-2.09 (m, 2H), 1.44-1.33 (m, 2H), 1.25-1.09 (m, 6H), 0.82 (t, J = 7.0 Hz, 3H). MS-ESI: m/z 406.57 observed (M + H)+
The following abbreviations are used: tetrahydrofuran (THF), dichloromethane (DCM), Acetonitrile (MeCN), N,N-dimethylformamide (DMF), dimethylsulfoxide (DMSO), trifluoroacetic acid (TFA), triethylamine (TEA), diisopropylethylamine (DIPEA), methanol (MeOH), Ethyl acetate (EtOAc), 4-Dimethylaminopyridine (DMAP), N-(3-Dimethylaminopropyl)-N′-ethylcarbodiimide hydrochloride (EDC.HCl), N,N′-Dicyclohexylcarbodiimide (DCC).
The starting materials and intermediates for the compounds of this invention may be prepared by the application or adaptation of the methods described below, their obvious chemical equivalents, or, for example, as described in literature such as The Science of Synthesis, Volumes 1-8. Editors E. M. Carreira et al. Thieme publishers (2001-2008). Details of reagent and reaction options are also available by structure and reaction searches using commercial computer search engines such as Scifinder (www.cas.org) or Reaxys (www.reaxys.com).
(2R,3S,5R)-5-(6-amino-2-fluoro-9H-purin-9-yl)-2-(((tert-butyldiphenylsilyl)oxy)methyl)-2-ethynyltetrahydrofuran-3-yl acetate, A: Intermediate A is prepared according to the reported procedure in the literature (Org. Lett. 2011, 13, 5264-5266). LC-MS (ESI+): m/z 574.19 [M+H]+.
(2R,3S,5R)-5-(6-amino-2-fluoro-9H-purin-9-yl)-2-(((tert-butyldiphenylsilyl)oxy)methyl)-2-ethynyltetrahydrofuran-3-ol, B: To a solution of intermediate A (500 mg, 0.87 mmol) in MeOH (10 mL) was added methanolic ammonia (10 mL) at rt and stirred for 12 h. The reaction mixture was concentrated under reduced pressure to obtained crude material and the resulting crude material was purified by silica-gel column chromatography using 2% MeOH in DCM to obtain the intermediate B (400 mg, 86.33%). LC-MS (ESI+): m/z 532.4 [M+H]+.
(2R,3S,5R)-5-(6-amino-2-fluoro-9H-purin-9-yl)-2-ethynyl-2-(hydroxymethyl) tetrahydrofuran-3-ol, 1: Compound 1 (EFdA) is prepared according to the reported procedure in the literature (Org. Lett. 2011, 13, 5264-5266). 1H NMR (400 MHz, DMSO-d) δ 8.30 (s, 1H), 7.86 (d, J=27.7 Hz, 2H), 6.24 (dd, J=7.4, 5.0 Hz, 1H), 5.63-5.54 (m, 1H), 5.35-5.25 (m, 1H), 4.56 (q, J=6.4 Hz, 1H), 3.67-3.60 (m, 1H), 3.60-3.49 (m, 2H), 2.74-2.63 (m, 1H), 2.46-2.36 (m, 1H). LC-MS (ESI+): m/z 294.2 [M+H]+.
(2R,3S,5R)-5-(6-amino-2-fluoro-9H-purin-9-yl)-2-ethynyl-2-((isobutyryloxy)methyl) tetrahydrofuran-3-yl isobutyrate, 2: To a mixture of EFdA (3 g, 6.8 mmol, 1 equiv.), DMAP (499 mg, 2.73 mmol, 0.4 equiv.) in anhydrous DMF (100 mL) was added isobutyric acid (8.4 g, 27.3 mmol, 6 equiv.) dropwise at ambient temperature. The reaction stirred for 5 h at rt. The reaction is monitored by LCMS due to the occasional alkylation of NH2 group observed for elongated reaction time. The reaction mixture was then filtered to remove byproduct urea. Acetonitrile was used to rinse the reaction mixture. Thereafter, the reaction was washed twice with water and once with brine and then the solvent was dried, filtered and evaporated under reduced pressure. The resulting crude material was purified by silica-gel column chromatography using 60-70/% EtOAc in Hexanes to obtain the compound 2 as a glassy solid. The obtained solid was dispersed in minimum amount of isopropanol followed by its rotatory evaporation to obtain pure compound as a white solid (2.5 g, 85% yield). LC-MS (ESI+): m/z 434.49 [M+H]+.
(2R,3S,5R)-5-(6-amino-2-fluoro-9H-purin-9-yl)-2-(((2-ethylbutanoyl)oxy)methyl)-2-ethynyltetrahydrofuran-3-yl 2-ethylbutanoate, 3: To a mixture of EFdA (1 g, 3.4 mmol, 1 equiv.), 2-ethylbutanoic anhydride (4.4 g, 20.4 mmol, 6 equiv.), TEA (3.8 ml, 27.2 mmol, 8 equiv.) in anhydrous MeCN (43 mL) and cooled to 0° C. was added DMAP (83 mg, 0.68 mmol, 0.2 equiv.) at 0° C. The reaction stirred for 0.5 h at 0° C. and then to 5 h at rt. The reaction is monitored by LCMS due to the occasional alkylation of NH2 group observed for elongated reaction time. The reaction was further quenched with methanol and solvent was evaporated under reduced pressure. The resulting crude material was purified by silica-gel column chromatography using 60-70%% EtOAc in Hexanes to obtain the compound 3 as a glassy solid. The obtained solid was dispersed in minimum amount of isopropanol followed by its rotatory evaporation to obtain pure compound as a white solid (1.33 g, 80% yield). LC-MS (ESI+): m/z 490.56 [M+H]+.
(2R,3S,5R)-5-(6-amino-2-fluoro-9H-purin-9-yl)-2-(((cyclopentanecarbonyl)oxy)methyl)-2-ethynyltetrahydrofuran-3-yl cyclopentanecarboxylate. 4: Compound 4 was prepared by using the procedure followed for the compound 2. LC-MS (ESI+): m/z 486.44 [M+H]+.
(2R,3S,5R)-5-(6-amino-2-fluoro-9H-purin-9-yl)-2-ethynyl-2-((2-phenylacetoxy)methyl) tetrahydrofuran-3-yl 2-phenylacetate, 5: To a mixture of EFdA (499 mg, 1.7 mmol, 1 equiv.), 2-phenylacetic anhydride (2.6 g, 10.2 mmol, 6 equiv.), TEA (1.9 ml, 13.6 mmol, 8 equiv.) in anhydrous MeCN (22 mL) and cooled to 0° C. was added DMAP (42 mg, 0.34 mmol, 0.2 equiv.) at 0° C. The reaction stirred for 0.5 h at 0° C. and then to 3 h at rt. The reaction is monitored by LCMS due to the occasional alkylation of NH2 group observed for elongated reaction time. The reaction was further quenched with methanol and solvent was evaporated under reduced pressure. The resulting crude material was purified by silica-gel column chromatography using 60-70/6% EtOAc in Hexanes to obtain the compound 5 as a glassy solid. The obtained solid was dispersed in minimum amount of isopropanol followed by its rotatory evaporation to obtain pure compound as a white solid (694 mg, 77% yield). LC-MS (ESI+): m/z 530.52 [M+H]+.
(2R,3S,5R)-5-(6-amino-2-fluoro-9H-purin-9-yl)-2-ethynyl-2-((((S)-2-phenylpropanoyl)oxy) methyl)tetrahydrofuran-3-yl (S)-2-phenylpropanoate, 6: Compound 6 was prepared by using the procedure followed for the compound 2 with following differences: a) 4 equiv of corresponding acid used instead of 6; b) After remove urea via filtration, the solvent was evaporated under reduced pressure and resulting white solid was then suspended in minimum amount of isopropanol and stirred for an hour. The suspension was then filtered to obtain pure compound as a white solid in 75% yield. LC-MS (ESI+): m/z 558.65 [M+H]+.
(2R,3S,5R)-5-(6-amino-2-fluoro-9H-purin-9-yl)-2-((benzoyloxy)methyl)-2-ethynyl tetrahydrofuran-3-yl benzoate, 7: Compound 7 was prepared by using the procedure followed for the compound 2 using 4.5 equiv of corresponding acid. LC-MS (ESI+): m/z 502.41 [M+H]+.
(2R,3S,5R)-5-(6-amino-2-fluoro-9H-purin-9-yl)-2-((((4Z,7Z,10Z,13Z,16Z,19Z)-docosa-4,7,10,13,16,19-hexaenoyl)oxy)methyl)-2-ethynyltetrahydrofuran-3-yl (4Z,7Z,10Z,13Z,16Z,19Z)-docosa-4,7,10,13,16,19-hexaenoate, 8: To a mixture of EFdA (117 mg, 0.4 mmol, 1 equiv.), Docosahexaenoic Acid (0.39 g, 1.2 mmol, 3 equiv.), DMAP (4.9 mg, 0.04 mmol, 0.1 equiv.), EDC.HCl (307 mg, 1.6 mmol, 4 equiv.) in anhydrous DMF (4 mL) and cooled to 0° C. was added DIPEA (0.3 mL, 1.6 mmol, 4 equiv.) at 0° C. The reaction stirred for 8 h at rt. The reaction is monitored by LCMS due to the occasional alkylation of NH2 group observed for elongated reaction time. Thereafter, the reaction was diluted with EtOAc and washed thrice with 2.5% NaCl, thrice with buffer pH-7 solution and once with brine and then the solvent was dried, filtered and evaporated under reduced pressure. The resulting crude material was purified by silica-gel column chromatography using 5% DCM in MeOH to obtain the compound 8 as gel-like semi solid (183 mg, 50% yield). LC-MS (ESI+): m/z 457.23 [M/2+H]+.
(2R,3S,5R)-5-(6-amino-2-fluoro-9H-purin-9-yl)-2-ethynyl-2-((heptadecanoyloxy)methyl) tetrahydrofuran-3-yl heptadecanoate, 9: Compound 9 was prepared by using the procedure followed for the compound 2 using 8 equiv of corresponding acid and 6 equiv of DCC. 1H NMR (400 MHz, Chloroform-d) δ 7.92 (s, 1H), 6.40 (t, J=6.4 Hz, 1H), 5.76 (brs, 2H), 5.65 (dd, J=7.1, 5.3 Hz, 1H), 4.49 (d, J=12.0 Hz, 1H), 4.38 (d, J=12.1 Hz, 1H), 2.99 (dt, J=13.5, 6.7 Hz, 1H), 2.75-2.64 (m, 2H), 2.41 (t, J=7.5 Hz, 2H), 2.34 (q, J=3.8 Hz, 1H), 1.71-1.57 (m, 9H), 1.41-1.17 (m, 48H), 0.88 (t, J=6.8 Hz, 6H). LC-MS (ESI+): m/z no signal observed.
(2R,3S,5R)-5-(6-amino-2-fluoro-9H-purin-9-yl)-2-ethynyl-2-((palmitoyloxy)methyl) tetrahydrofuran-3-yl palmitate, 10: To a flask containing EFdA (202 mg, 0.7 mmol, 1 equiv.) was added anhydrous pyridine (7 mL). The mixture was stirred for 1-2 min and cooled to 0° C. To this mixture was added palmitoyl chloride (1.3 mL, 4.2 mmol, 6 equiv.) dropwise at 0° C. The reaction stirred for overnight at rt. The reaction is monitored by LCMS due to the occasional alkylation of NH2 group observed for elongated reaction time. Thereafter, the reaction was diluted with EtOAc and washed thrice with water, once with NaHCO3 and once with brine and then the solvent was dried, filtered and evaporated under reduced pressure. The resulting crude material was purified by silica-gel column chromatography using 60-70/o % EtOAc in Hexanes to obtain the compound 10 as a glassy solid. The obtained solid was dispersed in minimum amount of isopropanol followed by its rotatory evaporation to obtain pure compound as a white solid (372 mg, 70% yield). 1H NMR (400 MHz, DMSO-d6) δ 8.34 (s, 1H), 7.91 (d, J=30.8 Hz, 2H), 6.34 (t, J=6.9 Hz, 1H), 5.70 (t, J=6.4 Hz, 1H), 4.39 (d, J=11.6 Hz, 1H), 4.22 (d, J=11.9 Hz, 1H), 3.81-3.73 (m, 1H), 3.14 (dt, J=14.1, 6.9 Hz, 1H), 2.60 (dt, J=12.9, 6.0 Hz, 1H), 2.39 (td, J=7.3, 2.4 Hz, 2H), 2.32-2.17 (m, 2H), 1.64-1.52 (m, 2H), 1.51-1.39 (m, 2H), 1.38-1.11 (m, 48H), 0.92-0.78 (m, 6H). LC-MS (ESI+): m/z no signal observed.
(2R,3S,5R)-5-(6-amino-2-fluoro-9H-purin-9-yl)-2-ethynyl-2-((heptanoyloxy)methyl) tetrahydrofuran-3-yl heptanoate, 11: Compound 11 was prepared by using the procedure followed for the compound 2 using 8 equiv of corresponding acid and 6 equiv of DCC. LC-MS (ESI+): m/z 518.25 [M+H]+.
((2R,3S,5R)-3-((D-valyl)oxy)-5-(6-amino-2-fluoro-9H-purin-9-yl)-2-ethynyltetrahydrofuran-2-yl)methyl D-valinate, 12: Compound 12 was prepared by using the procedure followed for the compound 2 using 7 equiv of corresponding boc protected amino acid and 7 equiv of DCC followed by typical deprotection of Boc group using HCl in dioxane. LC-MS (ESI+): m/z 492.64 [M+H]+.
Compounds 13-15 were prepared by using the procedure followed for the compound 12.
Compounds 16-23 were prepared by using the procedure followed for the compound 24 described below in Example 24.
(2R,3S,5R)-5-(6-amino-2-fluoro-9H-purin-9-yl)-2-ethynyl-2-(hydroxymethyl)tetra hydrofuran-3-yl heptanoate, 24:
Step-1: To a solution of intermediate B (400 mg, 0.75 mmol, 1 equiv.) in anhydrous MeCN (12 mL) was added DIPEA (0.6 mL, 3.77 mmol, 5 equiv.) and DMAP (18.4 mg, 0.15 mmol, 0.2 equiv.). To this stirred solution at 0° C. was added dropwise heptanoic anhydride (365 mg, 1.5 mmol, 2 equiv.) in MeCN (5 mL). The resulting mixture was then stirred at rt for 1 h. The reaction is monitored by LCMS. After completion of reaction, reaction mixture was quenched in ice cold water (20 ml) and was extracted with ethyl acetate (3×20 mL). The combined organic layer was dried, filtered and evaporated under reduced pressure. The resulting crude material was purified by silica-gel column chromatography using 1.5% DCM in MeOH to obtain the intermediate C (430 mg, 88.8% yield). LC-MS (ESI+): m/z 645.00 [M+H]+.
Step-2: To a solution of intermediate C (430 mg, 0.67 mmol, 1 equiv.) in anhydrous MeOH (5 mL) was added NH4F (495 mL, 13.35 mmol, 20 equiv.). The resulting mixture was then stirred at rt for 12 h. The reaction is monitored by LCMS. After completion of reaction, reaction mixture was quenched in ice cold water (20 ml) and was extracted with ethyl acetate (3×20 mL). The combined organic layer was dried, filtered and evaporated under reduced pressure. The resulting crude material was purified by silica-gel column chromatography using 2.5% DCM in MeOH to obtain the compound 24 as an off-white solid (187 mg, 69.1% yield). LC-MS (ESI+): m/z 406.55 [M+H]+.
Note: If reaction not completed after 12 h stirring at rt then stirred for additional 2 h at 60° C. for other compounds including compound 24.
Compounds 25-26 were prepared by using the procedure followed for the compound 24 described above in Example 24.
Compounds 27-38 were prepared by using the procedure followed for the compound 39 described below in Example 39.
((2R,3S,5R)-5-(6-amino-2-fluoro-9H-purin-9-yl)-2-ethynyl-3-hydroxytetrahydrofuran-2-yl)methyl dodecanoate, 39: To a flask containing EFdA (997 mg, 3.4 mmol, 1 equiv.) was added anhydrous pyridine (34 mL). The mixture was stirred for 1-2 min and cooled to 0° C. To this mixture was added lauroyl chloride (2.0 mL, 8.5 mmol, 2.5 equiv.) dropwise at 0° C. The reaction stirred for overnight at rt. The reaction is monitored by LCMS due to the occasional alkylation of NH2 group observed for elongated reaction time. Thereafter, the reaction was diluted with EtOAc and washed thrice with water, once with NaHCO3 and once with brine and then the solvent was dried, filtered and evaporated under reduced pressure. The resulting crude material was purified by silica-gel column chromatography using 1.5% DCM in MeOH to obtain the compound 39 as an off-white solid (1.0 g, 65% yield). LC-MS (ESI+): m/z 476.66 [M+H]+.
Compounds 40-42 were prepared by using the procedure followed for the compound 39 described above in Example 39.
Compound 43 can be prepared by using the procedure followed for the compound 39 using the acid chloride of known acid dihexadecylglycine.
Compound 44 can be prepared by the reaction between EFdA and the corresponding chloroformate in the pyridine as the solvent.
Compounds 45-50 can be prepared following procedures similar to those of the other examples described herein.
Compound 2 (˜200 mg) was completely dissolved in minimum quantity of acetone with stirring. This was followed by slow evaporation of the solvents at ambient temperature. This resulted in a recrystallized sample as a white powder. Other solvents including EtOAc, MeOH and THF can also be used.
All formulation protocols generated a stable aqueous suspension with 26-gauge syringeability.
Compound 1 (EFdA) was grinded and sieved through #80. 300 mg of 1 was taken in suitable container and a solution of preformed 0.25% sodium carboxymethyl cellulose (Sodium CMC) and 0.1% polyoxyethlene (20) sorbitan monooleate (TWEEN-80) was added to obtain 1 gram (300 mg of 1+˜700 mg of polymer solution) of the final formulation (˜300 mg/g). The suspension was then bath sonicated for 10 min in an Ice bath. The density of formulation of is 1.064 g/mL. Henceforth, the above formulation suspension will be 319.2 mg/mL concentration of compound 1 (EFdA).
Recrystallized Compound 2 was grinded and sieved through #80. 250 mg of 1 was taken in suitable container and a solution of preformed 0.25% Sodium CMC and 0.1% TWEEN-80 was added to obtain 1 gram (250 mg of 1+˜750 mg of polymer solution) of the final formulation (˜250 mg/g). The suspension was then probe sonicated for 5 min in an ice bath (Sonication time: 5 min; Pulse Amplitude: 20; Pulse on Time: 30 sec; Pulse off time: 20 sec).
Compound 3 was grinded and sieved through #80. 250 mg of 3 was taken in suitable container and a solution of preformed 0.25% Sodium CMC and 0.5% TWEEN-80 was added to obtain 1 gram (250 mg of 3+˜750 mg of polymer solution) of the final formulation (˜250 mg/g). The suspension was then probe sonicated for 5 min in an ice bath (Sonication time: 5 min; Pulse Amplitude: 20; Pulse on Time: 30 sec; Pulse off time: 20 sec). The density of formulation of is 1.004 g/mL. Henceforth, the above formulation suspension will be 250.88 mg/mL concentration of compound 3 (˜150 mg/mL of EFdA).
Compound 5 was grinded and sieved through #80. 200 mg of 5 was taken in suitable container and a solution of preformed 0.25% Sodium CMC and 0.5% TWEEN-80 was added to obtain 1 gram (200 mg of 5+˜800 mg of polymer solution) of the final formulation (˜200 mg/g). The suspension was then probe sonicated for 5 min in an ice bath (Sonication time: 5 min; Pulse Amplitude: 20; Pulse on Time: 30 sec; Pulse off time: 20 sec). The density of formulation of is 1.047 g/mL. Henceforth, the above formulation suspension will be 209.4 mg/mL concentration of compound 5 (˜115.97 mg/mL of EFdA).
Animals (Male SD rats ˜200-250 g and Male rhesus macaques ˜2-3 kg) were obtained from an approved vendor (SLAC Laboratory Animal Co. Ltd., Shanghai, China and/or Topgene Biotechnology, Wuhan city, Hubei Province, China).
Acclimation/Quarantine: Following arrival, animals were assessed as to their general health by a member of the veterinary staff or other authorized personnel. Animals were acclimated for at least 3 days before being placed on study.
Animal Husbandry: Animals were group housed during acclimation and individually housed during the study. The animal room environment will be controlled (target conditions: temperature 18 to 26° C., relative humidity 30 to 70%, 12 hours artificial light and 12 hours dark). Temperature and relative humidity were monitored daily.
Animal Camumlation: No.
Animals were fasted at least 12 hours prior to the administration. All animals had access to Certified Rodent and non-Rodent Diet (Catalog #M01-F, SLAC Laboratory Animal Cl. Ltd., Shanghai, China) ad libitum 4 hours post dosing.
Water was autoclaved before provided to the animals ad libitum. Periodic analyses of the water was performed and the results archived. There are no known contaminants in the diet or water that, at the levels of detection, is expected to interfere with the purpose, conduct or outcome of the study.
SC Formulation: The formulations were prepared according to the procedure given in Examples 52-55 and Table 2-4. The formulations were prepared on the day of dosing. Animals were dosed within four hours after the formulation is prepared. Two 20 μL aliquots of each formulation were removed from each of the formulation solutions, transferred into 1.5 mL of polypropylene microcentrifuge tubes and run dose validation by LC/UV or LC-MS/MS.
For SC dosing, the dose formulation was administered via subcutaneous injection following facility SOPs.
Approximately 200 μL blood was collected from saphenous vein at each time point for rats and 0.5 mL for rhesus macaques. All blood samples were transferred into microcentrifuge tubes containing 4 μL of K2EDTA (0.5M) as anti-coagulant and placed on wet ice until processed for plasma.
Blood: Blood samples were processed for plasma by centrifugation at approximately 4° C., 3000 g 15 min within half an hour of collection. Plasma samples was stored in polypropylene tubes, quick frozen over dry ice and kept at −70±10° C. until LC/MS/MS analysis.
Plasma concentration versus time data was analyzed by non-compartmental approaches using the Phoenix WINNONLIN 6.3 software program. Cmax, Tmax, T1/2, AUC(0-t), AUC(0-inf), MRT(0-t), MRT(0-inf), % F and graphs of plasma concentration versus time profile were reported.
Several prodrugs including EFdA (1) as a control were subjected to a single dose rat PK studies via subcutaneous route of administration. All were injected with equivalent doses of 10 mg/kg and concentration of 4 mg/mL of EFdA as an aqueous suspension formulation derived from 0.5% CMC-Na and 0.5% TWEEN-80. While similar exposure was observed, all prodrugs 2, 3 and 5 exhibited plasma levels of EFdA above LLOQ for more than a week with Cmax much lower than EFdA itself.
Table 2 shows the rat PK data for compounds 1, 2, 3 and 5 following SC administration at 10 mg/kg equivalent dose of EFdA. The data are shown in graphic form is shown in
12 ± 1.2
4 ± 2.3
After a series of formulation optimization, SC rat PK studies were performed again with high equivalent dose of 100 mg/kg at high equivalent concentration of 120 mg/mL and 319 mg/mL of EFdA for prodrug 3 and EFdA respectively. Prodrug 3 provides a delayed and 100-fold lower Cmax than EFdA. Enhanced half life and mean residence life were also observed in case of prodrug 3 making it suitable for prophylaxis.
Table 3 shows the rat PK data for compounds 1 and 3 following SC administration at 10 mg/kg and 100 mg/kg equivalent dose of EFdA at high concentration formulation. The data are shown in graphic form in
After rat PK analysis, the focus was shifted to non-rodents i.e. rhesus macaque. Prodrug 5 and EFdA were subjected to a single dose rhesus macaque PK studies via subcutaneous route of administration with equivalent doses of 50 mg/kg of EFdA. The aqueous suspension formulations were derived from 0.25;% CMC-Na and 0.1;%/0.5% TWEEN-80 with equivalent concentration of 116 mg/mL and 319 mg/mL of EFdA for prodrug 5 and EFdA respectively. Prodrugs 5 exhibited plasma levels of EFdA above LLOQ for more than a month with 24-fold lower Cmax than EFdA itself.
Table 4 shows the Rhesus PK data for compounds 1 and 5 following SC administration at 50 mg/kg equivalent dose of EFdA at high concentration formulation. The data are shown in graphic form in
4 ± 3.6
This application is a 371 of PCT/US2020/050519, filed on Sep. 11, 2020, which claims the benefit of U.S. Provisional Application Ser. No. 62/898,679, filed on Sep. 11, 2019, each of which is incorporated herein by reference in its entirety.
| Filing Document | Filing Date | Country | Kind |
|---|---|---|---|
| PCT/US20/50519 | 9/11/2020 | WO |
| Number | Date | Country | |
|---|---|---|---|
| 62898679 | Sep 2019 | US |
