Many industries, such as the medical and food service industries, often require the testing of a sample of material in order to determine whether a certain biological bacterium or other organism is present. The presence of such an organism may be indicative of a problem. For example, the presence of the organism may indicate the presence of infection in a person or the presence of a contaminant in food or on a food preparation surface.
In existing methods of testing the sample of material, a sample acquisition device, such as a swab, which includes a porous medium on the end of a shaft, may be used to gather the sample of material. Specifically, the porous medium of the swab may be placed in contact with a sample source, such as a nose, ear, throat, or wound of a person, or a food preparation surface, and a sample may then adhere to the porous medium. Thereafter, the sample acquisition device may be transferred to a different location, such as a laboratory, where the collected sample is transferred from the sample acquisition device to a slide or other external laboratory apparatus in order to run an assay to analyze whether the particular organism of interest is present. The particular organism of interest may be referred to as an “analyte”.
In addition to a delay in time, the transfer of the sample acquisition device from the sample source to the off-site location may cause the collected sample to become contaminated or dry out, which may decrease the reliability of the analyte detection. Furthermore, a non-self contained testing device or method may be problematic because the lab technician may be exposed to the analyte during the testing process. The present invention addresses these and/or other problems and provides advantages over other device.
The application discloses, in one aspect, an apparatus for processing a biological material. In illustrative embodiments, the apparatus includes a chamber configured to receive an eluted sample. The sample is tested using a testing device separate from the chamber. As disclosed, the sample is introduced into the chamber while the apparatus is in a first orientation. The orientation of the apparatus is changed to move the eluted sample from the chamber for testing using the testing device.
In one aspect, an apparatus is disclosed for detecting an analyte in a sample of material. The apparatus comprises a housing including an opening configured to receive a sample acquisition device comprising a sample of material, a chamber configured to receive an eluted sample from the sample acquisition device, a testing chamber including a testing device adapted to detect the analyte, and a passageway connecting the chamber configured to receive the eluted sample with the testing chamber and being oriented to provide fluid flow from the first chamber to the testing chamber when the apparatus is in a first orientation and to restrict fluid flow to the testing chamber when the apparatus is in another orientation.
In another aspect, an apparatus is disclosed for processing a sample of material. The apparatus comprises a base having an opening at a first end adapt to receive a sample acquisition device and a chamber spaced from the opening, and a removable indicator cap including a testing device coupleable to the opening at the first end of the base to test an analyte in the sample of material in the chamber.
In another aspect, a method is disclosed of detecting an analyte in a sample of material. The method comprises eluting a sample of material from a sample acquisition device into a chamber in an apparatus, and rotating the apparatus at least ninety degrees and testing the eluted sample using a testing device.
In another aspect, a method is disclosed of detecting an analyte in a sample of material. The method comprises eluting the sample of material from a sample acquisition device at a first end of an apparatus to form an eluted sample, removing the sample acquisition device from the apparatus, attaching a testing device to an opening at the first end of the apparatus, and manipulating the apparatus to cause the eluted sample to contact the testing device.
The above summary is not intended to describe each disclosed embodiment or every implementation of the present invention. The figures and the detailed description which follow more particularly exemplify illustrative embodiments.
The present invention will be further explained with reference to the drawing figures listed below, where like structure is referenced by like numerals throughout the several views.
While the above-identified figures set forth several exemplary embodiments of the present invention, other embodiments are also within the invention. In all cases, this disclosure presents the invention by way of representation and not limitation. It should be understood that numerous other modifications and embodiments can be devised by those skilled in the art, which fall within the scope and spirit of the principles of the invention.
The present invention is an apparatus for detecting an analyte, such as Gram-positive or Gram-negative bacteria, in a sample of material. In the embodiments shown, the apparatus includes a chamber configured to receive the sample of material and a testing device adapted to detect an analyte in the sample of material and the apparatus is moveable between a sample preparation orientation and a testing orientation. The apparatus may be moved between the two orientations by an apparatus operator or a mechanical (or electromechanical) machine. In a sample preparation orientation, the sample of material is prepared for detection by the testing device. For example, the sample may be eluted from a sample acquisition device and/or pretreated for detection. Different analytes may require different pretreatments to change the physical or chemical properties of a sample or analyte before analyte detection, and the relevant pretreatments may be incorporated into the present invention. In the exemplary embodiments, the pretreatment includes mixing an eluted sample with a reagent, where the reagent is adapted to react with an analyte that is present in the eluted sample. In the testing orientation, the apparatus is orientated to change a fluid flow path through the apparatus, so that the eluted and/or pretreated sample retained in the chamber of the apparatus contacts the testing device.
By moving the apparatus from the sample preparation orientation to the testing orientation, a flow path through the apparatus is modified, and as a result, different portions of the apparatus are fluidically connected with one another. The chamber is configured so that in the sample preparation orientation, the sample of material (e.g., a sample eluted from a sample acquisition device) retained in the chamber does not contact the testing device. The different apparatus orientations allow an apparatus operator to control the duration of the sample preparation stage as well as the initiation of the testing stage. Specifically, the testing stage does not begin until the operator moves the apparatus from the sample preparation orientation to the testing orientation. Both the sample preparation and testing stages will be described in further detail below.
The inventive apparatus assembly is a relatively simple device that allows a sample of material to be tested for an analyte at or near the sample source. Rather than transferring the sample of material to an off-site laboratory, the present invention allows an operator to obtain a sample of material from a sample source and then test the sample for the presence of an analyte at or near the sample source. This helps to decrease the waiting time for a test result as well as helps to decrease the chances that the sample of material will become contaminated or dried out prior to testing. Further, the sample acquisition device containing the sample of material may be directly introduced into an apparatus of the present invention. This may decrease operator exposure to the sample of material, which may contain a hazardous analyte. In some embodiments, the apparatus is disposable, which helps to provide a clean, if not sterile, apparatus for each use.
In some embodiments, the apparatus of the present invention is configured to receive two or more samples of material and simultaneously (or essentially simultaneously) detect an analyte in each sample. The samples may be from the same sample source or from different sample sources, and the analyte in each sample may or may not be the same analyte. For example, in one embodiment, an apparatus is configured to receive two samples of material, and simultaneously detect Gram-positive bacteria in one sample and Gram-negative bacteria in the second sample. In other embodiments, the apparatus may be configured to receive a single sample of material and simultaneously (or essentially simultaneously) detect two different analytes in the single sample of material, such as by using two different testing devices. For example, in one embodiment, an apparatus is configured to receive a single sample acquisition device, which includes a sample of material, and the apparatus is configured to elute the sample from the sample acquisition device, where two testing devices simultaneously detect Gram-positive bacteria and Gram-negative bacteria in the eluted sample. In this way, the present invention provides a Gram-positive and a Gram-negative test in one apparatus.
The present invention is described in reference to exemplary embodiments, which both use an indirect assay to detect an analyte in a sample of material. A general understanding of the assay process that is used with the exemplary embodiment will help aid in the description of the inventive apparatus. However, the following description of the assay process is not intended to limit the present invention in any way. Rather, the inventive apparatus and method of detecting an analyte in a sample of material may be applied to many different types of assays, direct or indirect.
In accordance with the exemplary embodiments, a sample of material is obtained with a sample acquisition device. Prior to running the assay, the sample of material is prepared. In the sample preparation stage, the apparatus (or a component of the apparatus) is in a sample preparation orientation. The sample of material is eluted (or “released” or “washed”) from the sample acquisition device with a first buffer solution, rendering an eluted sample. Hereinafter, “eluted sample” refers to a combination of the sample that is removed from the sample acquisition device and the first buffer solution. Examples of suitable buffer solutions include, but are not limited to, water, physiological saline, pH buffered solutions, or any other solutions or combinations of solutions that elute an analyte from the sample acquisition device. The buffer solution preferably does not interfere with the assay.
The eluted sample is then mixed with a reagent that is adapted to react with (e.g., bind with) any analyte that is present in the eluted sample. If a direct assay is used, a reagent may not be necessary. After the analyte and reagent react, and after a sufficient “reaction time”, the apparatus may be moved from its sample preparation orientation to its testing orientation. In the testing orientation, the eluted sample and reagent mixture contact a testing device. In an indirect assay, the testing device detects the presence of a reagent adapted to react with the analyte rather than the analyte itself. Specifically, the reagent and analyte react, and then any remaining reagent (i.e., the reagent that has not reacted with the analyte to form a separate product) reacts with the testing device. For example, any remaining reagent (“first reagent”) may react with a second reagent that is immobilized on the testing device. Thereafter, the testing device provides a visual indicium of the presence and/or quantity of reagent. In the embodiment where the reagent reacts with a second reagent on the testing device, the amount of the first reagent that binds with the second reagent is indicated by a color change. It is preferred that the analyte and reagent are given sufficient time to react prior to contacting the testing device. The testing device may be any suitable device, such as a colorimetric sensor.
In one embodiment, the reagent reacts with a surface of the testing device (originally a blue color), and the testing device changes color as the reagent reacts with the testing device. If a large quantity of reagent reacts with the testing device, the testing device may change color from blue to red. If a small quantity of reagent reacts with the testing device, the testing device may not change color and remain blue. The testing device may also be configured to provide an indicium of the quantity of reagent present (which typically represents the quantity of analyte present in the sample of material). For example, the testing device may change color, where the intensity or hue of the color changes depending upon the amount of reagent present. In alternate embodiments, the testing device measures and indicates the amount of reagent in another suitable way.
The quantity of reagent present indicates the quantity of analyte present because typically, a large quantity of reagent present after the reaction with the analyte indicates that there was not a large quantity of analyte present in the sample of material. Similarly, a small quantity of reagent present after the reaction with the analyte indicates that there was a large quantity of analyte present in the sample of material.
In alternate embodiments, at least some of the analyte may be isolated from the eluted sample with a capture medium prior to contacting the analyte with the testing device. It may be desirable to isolate and, in some sense, concentrate the analyte because some analytes are only detected in large quantities. The isolation/concentration may increase the chance of an accurate detection.
In a first exemplary embodiment, the apparatus is substantially self-contained because generally all the chemistry for detecting the analyte is contained in the apparatus. This decreases the chance that an apparatus operator will be exposed to the analyte and/or fluids that are used in the testing process, such as by an accidental spill or otherwise. The first exemplary apparatus is moved from its sample preparation orientation to its testing orientation by tipping the apparatus over onto its side, about 90 degrees (°). The first exemplary apparatus includes a chamber for receiving a sample of material and a testing device adapted to detect an analyte. The chamber and testing device are configured in a generally side-by-side orientation so that two fluid flow paths are created through an interior of the apparatus. The first fluid flow path in the sample preparation orientation is separate from a second fluid flow path in the testing orientation. In the sample preparation orientation, the sample is blocked from the second fluid flow path, and so, in a sense, the sample is blocked from contacting the testing device. The first exemplary apparatus is described in reference to
In a second exemplary embodiment, the apparatus is an apparatus assembly that includes a base, which is configured to interchangeably receive the sample acquisition assembly and an indicator cap. The base includes a chamber for receiving an eluted sample of material. The sample acquisition assembly includes a hollow shaft including a distal end and a proximal end, where a porous medium is attached to the distal end and a fluid reservoir is attached to the proximal end. The indicator cap includes a testing device configured to detect an analyte and provide an indicium of the test result. In the sample preparation orientation, a sample acquisition assembly is removably attached to the base, which is positioned below the sample acquisition assembly (i.e., the base has the lowest z-coordinate, where orthogonal x-y-z coordinates are shown in
When the base is positioned below the sample acquisition assembly, a first fluid flow path is created from the sample acquisition assembly to the base (where gravity helps to determine the flow path). During this sample preparation stage, the sample is eluted from the sample acquisition device. While still in the sample preparation orientation, the sample acquisition assembly is removed from the base and the indicator cap is removably attached to the base. In the testing orientation, the indicator cap and base are rotated about 180° so that the indicator cap is positioned below the base and a second fluid flow path is created from the base to the indicator cap. The eluted and/or pretreated solution moves along the second fluid flow path to contact the testing device in the indicator cap. The second exemplary embodiment is discussed in further detail in reference to
Apparatus includes housing 14, which is configured to receive sample acquisition assembly 12. Housing 14 further includes chamber 16 for receiving eluted sample 18 (which is a sample of material that has been eluted from sample acquisition assembly 12), testing device 20, channel 21, and absorbent material 22. Testing device 20 is adapted to detect an analyte and provide an output of a test result. Channel 21 provides a passageway to fluidically connect chamber 16 with testing device 20. Absorbent material 22 is positioned adjacent testing device 20 (where testing device 20 is positioned between channel 21 and absorbent material 22). The absorbent material 22 is provided to help the fluid flow past testing device 20 by creating a wicking action.
Sample acquisition assembly 12 is received in opening 15 of housing 14 and is preferably in close conforming contact with opening 15 so that opening 15 is substantially covered by sample acquisition assembly 12. This helps to ensure that apparatus 10 is generally self-contained. Sample acquisition assembly 12 includes sample acquisition device 24 and fluid reservoir 26. Sample acquisition device 24 may be any suitable device, such as a swab. Examples of suitable sample acquisition devices are described in U.S. Pat. No. 5,266,266, entitled, “SPECIMEN TEST UNIT”, and U.S. patent application Ser. No. 60/705,140, entitled, “APPARATUS AND METHOD FOR COLLECTING A SAMPLE OF MATERIAL,” (Attorney Docket No. 61097US002) which was filed on the same date as the present application.
In the exemplary embodiment, it is preferred that sample acquisition device 24 include hollow shaft 28, having proximal end 28A and distal end 28B, and porous medium 30 attached to the hollow shaft 28 proximate to the distal end 28B. Porous medium 30 of sample acquisition device 24 may be placed in contact with a sample source, such as a nose, ear, or throat of a person (or a wound or other bodily area of interest), or a food preparation surface, and a sample from the sample source may then adhere to porous medium 30. By introducing sample acquisition device 24 (as a part of sample acquisition assembly 12) into opening 15, a sample is introduced into apparatus 10.
The exemplary fluid reservoir 26 retains a fluid (not shown in
When apparatus 10 is in its sample preparation orientation (
In the first exemplary embodiment, any analyte that is present in eluted sample 18 is placed in contact with a reagent adapted to react with the analyte. The reagent is preferably dehydrated in order to keep the reagent stable during storage of apparatus 10. In the exemplary embodiment, a dehydrated reagent is disposed within chamber 16 and reconstituted in chamber 16. Upon contact with the dehydrated reagent in chamber 16, eluted sample 18 reconstitutes the reagent in order to reactivate it. The reagent and analyte (if any) that is present in the eluted sample react in chamber 16. An operator may accelerate or otherwise aid the reaction process by agitating apparatus 10, such as by shaking apparatus 10 or vortex mixing the contents of chamber 16.
In alternate embodiments, the dehydrated reagent may be disposed within any suitable place within apparatus. For example, the dehydrated reagent may be disposed in housing 14 upstream of chamber 16 (i.e., along the first flow path before chamber 16). Alternatively, the reagent may be reconstituted outside apparatus 10 and injected into apparatus 10 through hollow shaft 28 of sample acquisition device 24.
In general, the location of the reagent and analyte reaction depends on where the reagent is disposed. However, it is preferred that the analyte react with a reagent when apparatus 10 is in its sample preparation orientation because as previously stated, in an indirect assay, it is the reagent that reacts with the testing device.
After sufficient time to allow reagent and any analyte present in eluted sample 18 to react, apparatus 10 may be moved from its sample preparation orientation (
In the testing orientation of apparatus 10, chamber 16, channel 21, and testing device 20 are configured to have different z-coordinates, where chamber 16 has the greatest z-coordinate and testing device has a smallest z-coordinate. As a result of the gradual downward slope from chamber 16 to testing device 20, a second flow path is formed from chamber 16 to testing device 20. In the exemplary embodiment, eluted sample 18 flows from chamber 16 to testing device 20 with the aid of gravity. As previously discussed, absorbent material 22 may also help encourage fluid flow past testing device 20. In alternate embodiments, other means of encouraging eluted sample 18 to flow from chamber 16 to testing device 20 are used.
After apparatus 10 is moved to its testing orientation 10, eluted sample 18 flows along the second flow path from chamber 16, through channel 21, and contacts testing device 20. In the first exemplary embodiment, channel 21 includes microfluidic elements for controlling the flow of fluid from chamber 16 to testing device 20. Testing device 20 may require fluid to flow past it at or below a certain rate in order for the analyte or reagent in the fluid to react with testing device 20. In the case of the exemplary embodiment, an indirect assay is used, and so it is the reagent in the fluid that reacts with testing device 20. A plurality of microfluidic elements may help regulate this fluid flow past testing device 20.
After sufficient time to allow any remaining reagent (i.e., the reagent that has not reacted with the analyte) to react with testing device 20, an operator (or machine) may read the test result in window 23, through which testing device 20 is in view. The reaction time depends upon many factors, including the type of analyte and/or reagent. Alternatively, window 23 may be in any suitable position on apparatus 10. Of course, window 23 may need to be by testing device 20 in order for testing device 20 to be visible in window 23.
Testing device 20 provides a visual indicium of whether the analyte is present in the sample of material collected with sample acquisition device 24, and in some embodiments, the test result indicates the quantity of analyte. In the first exemplary embodiment, testing device 20 is a colorimetric sensor, which may include, for example, a polydiacetylene material, as described in U.S. Patent Application Publication No. 2004/0132217 A1, and U.S. patent application Ser. No. 60/636,993, filed on Dec. 17, 2004, both entitled, “COLORIMETRIC SENSORS CONSTRUCTED OF DIACETYLENE MATERIALS”.
In the exemplary embodiment, a color of testing device 20 corresponds to a color-coding scheme. Testing device 20 may or may not provide a color change, depending upon whether the analyte is present in the sample of material. A user may view this color change through window 23. The color change may also be graded in order to indicate the quantity of analyte present. The quantity of analyte may, for example, be indicated by a color gradient which corresponds to “low level”, “medium level”, or “high level” indications. In some embodiments, apparatus 10 includes a label that illustrates the color-coding scheme, and an operator may compare the resulting color in window 23 with the label. In other embodiments, the color change cannot be detected with a human eye. In that case, a machine or electronic reader, such as a spectrometer, is used to detect the color change. In alternate embodiments, other testing devices may be used. For example, apparatus 10 may incorporate a testing device whose indicium of a test result is characterized by a pH change, or some other change in the characteristic of the medium being analyzed.
While
As previously described, the sample acquisition assembly 64 includes a sample acquisition device 68 which may be any suitable device or assembly. In the illustrated embodiment, sample acquisition device 68 is similar to sample acquisition device 24 of
The sample acquisition assembly 64 includes fluid reservoir 74. Fluid reservoir 74 is positioned in selective fluidic communication with first end 70A of hollow shaft 70 of sample acquisition device 68. Fluid reservoir 74 retains fluid 76, which elutes the sample of material from porous medium 72 of sample acquisition device 68 after fluid 76 is released from fluid reservoir 74.
In
In other alternate embodiments, fluid reservoir 74 is an accordion pleat bulb, or another type of reservoir that can selectively release fluid with greater pressure than a deformable squeeze bulb. A greater amount of pressure may be desirable in order to elute more of the sample of material from the porous medium 72 of sample acquisition device 68. Certain analytes may be more sensitive and a greater quantity of analyte may be required in order to be detected by the testing device. In those cases, it is preferred that a syringe or other device that is capable of releasing fluid with more pressure is used to release fluid 76, which elutes the sample of material from the porous medium 72.
Returning now to
Indicator cap 66 includes a channel and testing device (not shown) similar to channel 21 and testing device 20 of
The present invention may be used to detect an analyte in a sample of material. During the sample preparation stage of testing a sample of material, when base 62 is in a sample preparation orientation (shown in
Eluted sample 86 moves through base 62 in a first flow path, which is formed by base 62 in its sample preparation orientation. As
After eluted sample 86′ is retained in base 62, sample acquisition device 68 is removed from opening 82 of base 62 and indicator cap 66 may be attached to opening 82 of base 62.
As
After base 62 is moved into its testing orientation, eluted sample 86′ begins moving through the channel (not shown in
Although underside 66B of indicator cap 66, window 84, and color-code diagram 88 are shown in
As with first exemplary apparatus 10 of
Although the present invention has been described with reference to preferred embodiments, workers skilled in the art will recognize that changes may be made in form and detail without departing from the spirit and scope of the invention.
The complete disclosures of the patents, patent documents and publications cited herein are incorporated by reference in their entirety as if each were individually incorporated. Various modifications and alterations to this invention will become apparent to those skilled in the art without departing from the scope and spirit of this invention. It should be understood that this invention is not intended to be unduly limited by the illustrative embodiments and examples set forth herein and that such examples and embodiments are presented by way of example only with the scope of the invention intended to be limited only by the claims set forth herein as follows.
This application claims the benefit of U.S. Provisional Application Ser. No. 60/705,089, filed Aug. 2, 2005, which is incorporated by reference herein.
Filing Document | Filing Date | Country | Kind | 371c Date |
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PCT/US2006/030338 | 8/2/2006 | WO | 00 | 7/29/2008 |
Number | Date | Country | |
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60705089 | Aug 2005 | US |