Patent Application
20140335554
The present invention relates generally to systems and methods for aliquotting frozen samples, and more particularly to systems and methods for efficiently taking multiple frozen sample cores from a single frozen biological sample to provide a plurality of aliquots that can be analyzed separately without thawing the sample and while minimizing degradation of the sample, protecting the integrity of the sample, and prolonging its usable life.
Biological samples include any samples which are of animal (including human), plant, protozoal, fungal, bacterial, viral, or other biological origin. For example, biological samples include, but are not limited to, organisms and/or biological fluids isolated from or excreted by an organism such as plasma, serum, urine, whole blood, cord blood, other blood-based derivatives, cerebral spinal fluid, mucus (from respiratory tract, cervical), ascites, saliva, amniotic fluid, seminal fluid, tears, sweat, any fluids from plants (including sap); cells (e.g., animal, plant, protozoal, fungal, or bacterial cells, including buffy coat cells; cell lysates, homogenates, or suspensions; microsomes; cellular organelles (e.g., mitochondria); nucleic acids (e.g., RNA, DNA), including chromosomal DNA, mitochondrial DNA, and plasmids (e.g., seed plasmids); small molecule compounds in suspension or solution (e.g. small molecule compounds in DMSO); and other fluid-based biological samples. Biological samples may also include plants, portions of plants (e.g., seeds) and tissues (e.g., muscle, fat, skin, etc.).
Bio-banks typically cryopreserve these valuable samples (e.g., in freezers at −80 degrees centigrade using liquid Nitrogen or the vapor phase above liquid Nitrogen) to preserve the biochemical composition and integrity of the frozen sample as close as possible to the in vivo state to facilitate accurate, reproducible analyses of the samples.
From time to time, it may be desirable to run one or more tests on a sample that has been frozen. For example, a researcher may want to perform tests on a set of samples having certain characteristics. A particular sample may contain enough material to support a number of different tests. In order to conserve resources, smaller samples known as aliquots are commonly taken from larger cryopreserved samples for use in one or more tests so the remainder of the cryopreserved sample will be available for one or more different future tests.
Biobanks have adopted a couple of different ways to address this. One option is to freeze a sample in large volume, thaw it when aliquots are requested and then refreeze any remainder for storage in the cryopreserved state until future aliquots are needed. This option makes efficient use of freezer space; yet this efficiency comes at the cost of sample quality. Repeated freeze/thaw cycles can degrade critical biological molecules (e.g., RNA) and damage biomarkers, either of which could compromise the results of any study using data obtained from the damaged samples.
Another option is to freeze a sample in large volume, thaw it when an aliquot is requested, subdivide the remainder of the sample to make additional aliquots for future tests and then refreeze these smaller volume aliquots to cryopreserve each aliquot separately until needed for a future test. This approach limits the number of freeze/thaw cycles to which a sample is exposed, but there is added expense associated with labor, the larger volume of freezer space, and a larger inventory of containers required to maintain the cryopreserved aliquots. Moreover, the aliquots can be degraded or damaged by even a limited number freeze/thaw cycles. Yet another approach is to divide a large volume sample into smaller volume aliquots before freezing. This approach enables the freeze thaw cycles to be limited to only one, yet there are disadvantages associated with costs of labor, freezer space, and container inventory with this approach.
U.S. pre-grant publication No. 20090019877, the contents of which are hereby incorporated by reference, discloses a system for extracting frozen sample cores from a single frozen biological sample without thawing the sample. The system uses a drill including a hollow bit coring needle to take a frozen core sample from the original sample without thawing the sample. The frozen sample core obtained by the drill is used as the aliquot for the test. After the frozen core is removed, the remainder of the sample is returned to the freezer until another aliquot from the sample is needed for a future test. The present inventors have made various improvements on the system disclosed in the '877 publication, as will be described in detail below.
One aspect of the invention is a method of obtaining an aliquot of a frozen sample contained in a container, wherein the sample includes two or more substances. The method includes moving a sample coring device into the frozen sample at a location and then withdrawing the sample coring device from the sample to obtain the aliquot in the form of a frozen sample core taken from that location. The location is selected to be at a radial position where the concentration of at least one substance of interest in the frozen sample core is representative of the overall concentration of said at least one substance of interest in the sample notwithstanding any concentration gradients that may exist in the frozen sample.
Another aspect of the invention is a method of obtaining an aliquot of a frozen sample contained in a container, wherein the sample includes two or more substances. The method includes moving a sample coring device into the frozen sample at a first location and then withdrawing the sample coring device from the sample to obtain a first aliquot in the form of a frozen sample core taken from the first location. The sample coring device or another sample coring device is moved into the frozen sample at a second location having a different radial position within the sample from the first location and then withdrawn from the sample to obtain a second aliquot in the form of a frozen sample core taken from the second location. The first and second aliquots are combined to form an aggregate aliquot. The first and second locations are selected so the concentration of at least one substance of interest in the aggregate aliquot is representative of the overall concentration of that substance of interest in the sample notwithstanding any concentration gradients that may exist in the frozen sample.
Still another aspect of the invention is a system for obtaining frozen aliquots from frozen samples. The system has a platform for supporting a plurality of containers containing the frozen samples. A sample coring device includes a coring bit adapted to take frozen sample cores from the frozen samples by being moved into the frozen samples and then withdrawn from the frozen samples. A robotic system is adapted to produce relative movement between the sample coring device and platform and to operate the sample coring device to take frozen sample cores from the frozen samples. The system has a processor adapted to control the robotic system. The processor is programmed to accept input from a user and operate in one of multiple different modes in response to the input. The modes differing from one another in one of more of the following parameters:
Another aspect of the invention is a high precision automated positioning system. The system has a frame and a platform supported by the frame. The platform is adapted to support a plurality of samples. A temperature control block is supported by the frame and operable to at least one of heat and cool samples when they are on the platform. A robot supported by the frame is adapted to pick up samples off the platform, move the samples relative to the platform, and then place the samples down at a different position relative to the platform. The frame supports the temperature control block so the temperature control block is spaced from the platform by a gap to allow the platform to move relative to the temperature control block without contacting the temperature control block. The frame is connected to the temperature control block by a plurality of flexure mounts adapted to isolate the frame from thermal expansion or contraction of the temperature control block.
Yet another aspect of the invention is a system for taking frozen aliquots from a plurality of frozen samples. The system includes a frame and an enclosure supported by the frame. A platform is supported by the frame and adapted to support the frozen samples within the enclosure. A temperature control system is adapted to maintain samples on the platform and within the enclosure at a temperature in the range of about 0 degrees centigrade to about −180 degrees centigrade. A robot has an arm adapted to pick up samples off the platform, move the samples relative to the platform, and then place the samples down at a different position relative to the platform. The robot arm is mounted on the frame at a location outside the enclosure. A sample coring device is mounted on the robot arm. The coring device is operable to take frozen sample cores from the frozen samples.
Another aspect of the invention is a system for obtaining aliquots of frozen samples from a plurality of sample containers and transferring the aliquots to a plurality of aliquot-receiving containers. The system has a platform for supporting the sample containers and the aliquot-receiving containers. The platform includes at least one turntable. A sample coring device is adapted to take frozen sample cores from the frozen samples by being moved into the frozen samples and then withdrawn from the frozen samples. The sample coring device is mounted above the platform on an arm rotatable about a substantially vertical axis and moveable vertically up and down relative to the platform. A first servo-motor is adapted to drive rotation of the turntable. A second servo-motor is adapted to rotate the arm. A third servo-motor is adapted to move the arm up and down relative to the platform. The system is constructed so the first, second, and third servo-motors provide the only position control for one or more of the following functions that can be carried out by the system:
Still another aspect of the invention is a system for obtaining aliquots of frozen samples. The system has a platform for supporting a plurality of containers containing frozen samples. A sample coring device comprising a coring bit is adapted to take frozen sample cores from the frozen samples by being moved into the frozen samples and then withdrawn from the frozen samples. A robotic system is adapted to produce relative movement between the sample coring device and platform and operate the sample coring device to take sample cores from the frozen samples. A sample inspection system is adapted to detect one or more locations within a frozen sample from which a frozen sample core has already been taken. The sample inspection system includes a time-of-flight distance sensor adapted to detect a distance between the sensor and a surface of the samples.
Another aspect of the invention is a system for obtaining aliquots of frozen samples. The system has a platform for supporting a plurality of containers containing frozen samples. A sample coring device having a coring bit is adapted to take frozen sample cores from the frozen samples by being moved into the frozen samples and then withdrawn from the frozen samples. A robotic system is adapted to produce relative movement between the sample coring device and platform and operate the sample coring device to take sample cores from the frozen samples. A sample inspection system is adapted to detect one or more locations within a frozen sample from which a frozen sample core has already been taken. The sample inspection system has an imaging system adapted to image potentially cored surfaces of the samples and a processor programmed to analyze an image corresponding to only a portion of said potentially cored surface for a respective sample and determine whether or not said portion has been cored.
Still another aspect of the invention is a system for obtaining aliquots of frozen samples. The system has a platform for supporting a plurality of containers containing frozen samples. A sample coring device having a coring bit is adapted to take frozen sample cores from the frozen samples by being moved into the frozen samples and then withdrawn from the frozen samples. A robotic system is adapted to produce relative movement between the sample coring device and platform and operate the sample coring device to take sample cores from the frozen samples. A sample inspection system is adapted to detect one or more locations within a frozen sample from which a frozen sample core has already been taken. The sample inspection system includes a sensor that is operable to identify whether or not a potentially-cored surface of a sample has been cored at a particular location regardless of whether or not the potentially-cored surface has physical characteristics that cause it to reflect light in a diffuse manner.
Another aspect of the invention is a system for taking a plurality of aliquots from a plurality of frozen samples. The system has a sample coring device for taking a frozen sample core from a frozen sample. The sample coring device includes a moveable arm and a hollow coring bit mounted on the arm. A cleaning system includes a cleaning station having a housing having a chamber, an opening adapted for receive at least the lower end of the coring bit in the chamber, and a fluid inlet positioned to allow a cleaning fluid to flow into the chamber and contact an exterior of the coring bit. The cleaning system includes a cleaning fluid supply line connected to an inlet on the arm. The inlet on the arm is in fluidic connection with the hollow center of the coring bit for contacting the hollow center of the coring bit with the cleaning fluid.
Still another aspect of the invention is a system for taking a plurality of aliquots from a plurality of frozen samples. The system includes a sample coring device for taking a frozen sample core from a frozen sample. The sample coring device has a moveable arm and a hollow coring bit mounted on the arm. A cleaning system includes a cleaning station having a housing having a chamber and an opening adapted for receiving at least the lower end of the coring bit in the chamber. The cleaning system has a cleaning fluid supply and a drying gas supply. The cleaning system is adapted to inject cleaning fluid into the chamber to clean the coring bit and inject drying gas into the chamber to removed residual cleaning fluid from the coring bit by evaporation in the chamber. In some embodiments a plunger is mounted on the arm above the coring bit. The plunger is moveable from a first position in which the plunger is at a relatively higher position relative to the coring bit to a second position in which the plunger is at a relatively lower position relative to the coring bit. The plunger extends into the hollow center of the coring bit in the second position for ejecting a frozen sample core from the coring bit. The inlet on the arm is positioned so cleaning fluid supplied to the arm contacts the exterior of the plunger. The coring bit can be held in a rotatable spindle assembly mounted on the arm. The spindle assembly includes a hollow center in fluid communication with the hollow center of the coring bit. The cleaning system can have a tube on the arm moveable from a first position in which the tube does not contact the spindle assembly and a second position in which the tube forms a seal against the spindle assembly. The inlet on the arm being on the tube. The plunger can extend through the tube and the inlet can be positioned on the tube so cleaning fluid supplied to the arm contacts the exterior of the plunger. The system can include a supply of a drying gas. The cleaning system can be being adapted to cause the drying gas to contact the coring bit after the coring bit has been contacted by the cleaning fluid. For example, the cleaning system can be adapted to inject the drying gas through the inlet on the arm. The cleaning system is adapted to inject the drying gas into the chamber for receiving the lower portion of the coring bit.
Other objects and features will in part be apparent and in part pointed out hereinafter.
Corresponding reference characters indicate corresponding parts throughout the drawings.
Referring now to the drawings, first to
Biological samples include any samples which are of animal (including human), plant, protozoal, fungal, bacterial, viral, or other biological origin. For example, biological samples include, but are not limited to, organisms and/or biological fluids isolated from or excreted by an organism—such as plasma, serum, urine, whole blood, cord blood, other blood-based derivatives, cerebral spinal fluid, mucus (from respiratory tract, cervical), ascites, saliva, amniotic fluid, seminal fluid, tears, sweat, any fluids from plants (including sap), cells (e.g., animal, plant, protozoal, fungal, or bacterial cells, including buffy coat cells; cell lysates, homogenates, or suspensions; microsomes; cellular organelles (e.g., mitochondria); nucleic acids (e.g., RNA, DNA), including chromosomal DNA, mitochondrial DNA, and plasmids (e.g., seed plasmids), small molecule compounds in suspension or solution (e.g. small molecule compounds in DMSO), and other fluid-based biological samples. Biological samples may also include plants, portions of plants (e.g., seeds), and tissues (e.g., muscle, fat, organs, skin, etc.).
The robot 103 includes or is connected to a processor (not shown), such as a computer, that controls operation of the robot. The robot 103 is positioned in an enclosure 105 which protects the robot and also protects an operator from any sharp objects, aerosols, or spray that might be associated with operation of the robot. In the case of frozen biological samples, which might contain pathogens (e.g., blood-borne pathogens), the enclosure 105 also limits exposure of the operator to potential pathogens. The ability to limit release of sample materials into the environment can be important when the aliquotting system is used to take aliquots from frozen biological samples or other potentially hazardous materials.
Various different enclosures can be used within the scope of the invention. For example, the enclosure 105 in
The enclosure 105 also includes a removable cover 115 atop the enclosure base 107. The cover 115 can be removed to access the robot 103 for maintenance or repair as may be needed from time to time. The enclosure 105 also includes a door 117 on the front of the cover 115 that can be opened to load and unload the frozen sample vials and frozen aliquot vials from the system and/or perform limited maintenance or repairs on the system 101 without removing the cover. The cover 115 also helps insulate the frozen samples from thermal variables in the room containing the robot 103. It is contemplated that the enclosure 105 can be omitted from the system, such as if the circumstances permit operation without any enclosure or the system is to be placed in a separate fume or biological hood or other device that sufficiently addresses any concerns about release of materials from the samples into the environment.
Referring to
Although it is possible to use an x, y, z, Cartesian coordinate positioning system within the broad scope of the invention, the positioning system 121 in the illustrated embodiment is a θ, θ′, z positioning system. The positioning system 121 suitably includes one or more moveable platforms 131 for supporting the containers and a robotic arm 129 (the details of which will be described later) adapted to pick up samples off the platform(s), move the samples relative to the platform(s), and then place the samples down at a different position relative to the platform(s). As illustrated in
In the illustrated embodiment, the turntables 131 are adapted to support a plurality of removable trays 135, each of which is capable of supporting a plurality of containers C. For example, the upper surfaces of the turntables 131 may include recesses 137 configured to receive the trays 135 and hold them in position on the turntables. Each receptacle 133 in the illustrated embodiment is defined by an upright peripheral (e.g., cylindrical) sidewall supported by one of the trays 135. For example, open-ended cylindrical sleeves 139 can be inserted into wells 141 on the upper surfaces of the trays 135 to form the receptacles 133. Similar sleeves 139 are inserted into wells 143 at the center of the turntables 131 to form receptacles 133 at the sample coring and aliquot receiving stations 125, 127. The sleeves 139 are suitably made of a solid thermally conductive material such as metal and have a relatively high thermal mass so frozen samples or frozen aliquots inside the sleeves are thermally protected by the sleeve.
Another embodiment of a tray 135′ is illustrated in
The removable trays 135, 135′ facilitate loading and unloading containers from the turntables 131 because an entire tray and the containers thereon can be loaded or unloaded together in a single step. Although the receptacles 133, 133′ in the illustrated embodiment are circular in shape, it is understood the receptacles could have other shapes including polygonal shapes (e.g., square, hexagonal, etc.) within the scope of the invention. It is also understood that there are various other ways to adapt a platform for supporting a plurality of containers without using any trays or receptacles within the broad scope of the invention.
The drive system 161 for the turntables 131 suitably includes a single precision motion control device 163 (e.g., servo-motor) adapted to control movement of both turntables 131. As used herein the term “precision motion control device” refers to a mechanical drive system adapted to track a drive output, such as position or velocity, and ensure that a desired drive output is attained. Precision motion control devices include servo-motors and servo-mechanisms, which refer to motors or drive mechanisms having control systems that use feedback to provide precise control (e.g., positional control) of the motor/mechanism and/or one or more structures driven by the device. For example, servo-motors and servo-mechanisms can include control systems that use feedback from one or more position-indicating sensors (not shown) to achieve precise control of the output. The term precision motion control also includes stepper motors, which have motor control systems that track output of the motor by counting the number of steps through which the rotor has been rotated.
One feature of the system 101 is that it uses a relatively low number of precision motion control devices to perform a large number of varied tasks, as will be described below. Because precision motion control devices are relatively expensive to build or purchase and because significant maintenance is required to keep a precision motion control device in good working order, the ability to limit the number of precision motion control devices in the system 101 provides advantages. Using a precision motion control device (e.g., a single servo-mechanism 136) to control movement of both turntables is one aspect of this feature of the system 101. Others that may also be present will be described later.
Referring to
One or more of the rollers 197 for each turntable is suitably moveable in the radial direction and biased (e.g., by a spring) to move radially inward toward the center of the turntable to ensure the rollers maintain engagement with the turntable lip 199. As illustrated in
Referring again to
In particular, the wheel 165 in the illustrated embodiment supports a plurality of rotatable pegs 169 and the turntables 131 have teeth 171 that are enmeshed with the pegs so the turntables are turned by the pegs. This results in the turntables 131 being rotated in unison (i.e., at the same time, in the same direction, and at the same speed), but it is understood the turntables are not required to rotate in unison within the broad scope of the invention. The pegs 169 are suitably substantially cylindrical in cross sectional shape and the spaces between the teeth 171 are shaped so they substantially conform to the pegs, as illustrated. The pegs 169 can be made from or include roller bearings, ball bearings, or other bearings (not shown) that allow the pegs/bearings to rotate relative to the wheel 165 (e.g., on vertical axes when oriented as illustrated) while engaged with either of the turntables 131. The wheel 165 and pegs 169 result in a low-friction, low-backlash, positive drive connection between the motor 163 and the turntables 131, which facilitates very precise positioning of the turntables and the containers C thereon by the positioning system 121.
The system 101 includes a temperature control system 151 (See
As illustrated, the temperature control system 151 includes a temperature control block 153 positioned under the turntables 131 and an enclosure 155 partially enclosing the temperature control block, along with the turntables 131 and the containers thereon. The enclosure 155 includes a pair of removable covers 159. Each of the turntables 131 is covered by one of the covers 159. Various different temperature control blocks can be used to control the temperature of the frozen samples within the scope of the invention. For example, the temperature control block 153 can include a reservoir or passages (not shown) for containing a cooling fluid, such as liquid nitrogen or ethanol. By keeping the samples very cold, the temperature control system 151 helps limit (and ideally prevent) melting of the frozen samples during the aliquotting process. The temperature control system 151 also limits frost formation on the frozen samples. It is undesirable for frost to form on the samples because water in the frost can dilute the sample material and thereby alter the results of any quantitative analysis performed on the sample. Although the temperature control system 151 in the illustrated embodiment provides only cooling, it is contemplated that the temperature control system may heat frozen samples within the scope of the invention. For instance, it may be desirable in some cases to warm the frozen samples slightly above their cryogenic storage temperature to make the frozen samples less susceptible to cracking or other physical damage during the aliquotting process.
The temperature control block 153 is mechanically isolated from the turntables 131 to facilitate highly precise positioning of the sample containers by the positioning system 121. The frame 181 supports the turntables 131 so they are spaced slightly above the temperature control block 153. Accordingly, there are small gaps 157 between the top of the temperature control block 153 and the bottoms of the turntables 131, as illustrated in
Although the frame 181 supports the temperature control block 153, the frame is mechanically isolated from the potential effect of thermal expansion and contraction of the temperature control block. This further isolates the turntables 131 (and the positioning system 121 in general) from any thermally-induced strain associated with operation of the temperature control block 153. Referring to
If desired, the temperature control system 151 can also include one or more chillers or other cooling units (not shown) positioned outside the enclosure 155 surrounding the samples to keep the temperature outside the enclosure relatively cool to minimize the temperature difference between the interior and exterior of the enclosure 155. For example, one or more chillers can be used to cool the air or other gas inside the larger enclosure 105 enclosing the robot 103. In some cases, it may be desirable to keep the temperature outside the inner enclosure 155 and inside the outer enclosure 105 at a significantly higher temperature than the temperature inside the inner enclosure. Thus, the temperature control system can be designed to maintain a temperature outside the inner enclosure 155 but inside the outer enclosure 105 above a particular temperature (e.g., above freezing or at about room temperature). This may be desirable, for instance, to avoid the need to operate any precision motion control devices or other components of the system at the low temperatures maintained inside the enclosure 155.
As illustrated in
The robot arm 129 suitably includes a sample coring device adapted to take frozen sample cores from the frozen samples by being moved into the frozen samples and then withdrawn from the frozen samples. For example, the robot arm 129 in the illustrated embodiment includes a downward extending hollow coring bit 215 (
The motor 221 in the illustrated embodiment is suitably a precision motion control device (e.g., servo-motor) adapted to drive rotation of the coring bit 215. The servo-controlled motor 221, suitably provides very precise control over the speed and torque at which the coring bit is rotated. The ability to control the speed and torque facilitates operation of the coring bit 215 according to various different modes that can be selected to account for the physical characteristics of various types of frozen samples, as will be described in more detail below. Although the coring bit 215 in the embodiment illustrated in the drawings is driven by a precision motion control device 221, this device is not considered part of the positioning system 121 because it only rotates the coring bit and is not involved in moving the containers C or robot arm 129. In the illustrated embodiment, the entire system 101 includes no more than four (e.g., exactly four) precision motion control devices.
The robot arm 129 has a pair of gripping mechanisms 251 on opposite sides of the arm. Each gripping mechanism has a gripping arm 253 pivotally mounted on the robot arm 129 and moveable (e.g., by a pneumatic actuator 253) between a retracted position (shown in solid in
The cap 261 is suitably a threaded cap that can be secured to the container C by screwing the cap onto the top of the container. Thus, when the cap 261 is secured to the container C, the gripping mechanism 251 can pick up the entire container by gripping the cap. The system 101 is also adapted to remove the cap 261 from the container C while it is at the sample coring station 125 or aliquot receiving station 127 without picking up the container. For example, as illustrated in
The clamping mechanisms 271 each include a rod 273 extending radially inward toward the sample coring or aliquot receiving station 125, 127 from a toggle mechanism 275 (e.g., mechanical toggle switch) on the perimeter of the respective turntable 131. When the toggle mechanism 275 is in a first position (
The frame 181 supports a pair of clamping mechanism actuators 277 (e.g., pneumatic actuators) positioned on the periphery of the turntables. The actuators 277 can be extended radially inward to move the toggle mechanism 275 between the first and second positions when the turntable is in an orientation such that the portion of the toggle mechanism to be pushed by the actuator to accomplish the desired movement of the toggle mechanism is aligned with the actuator (see alignment of left turntable 131 to actuator 277 in
The robot arm 129 also includes a plunger 231 adapted to eject frozen sample cores from the coring bit 215. As illustrated in
The enclosure 155 for the frozen samples confines the coldest temperatures in the system 101 to relatively small space surrounding the samples. Significantly, the majority of the robot arm 129 remains outside the enclosure 155 even when the robot arm is inserted into the enclosure to drill into a frozen sample or move sample containers. For example, the motors 203, 207 for moving the robot arm 129 and the motor 221 for driving the coring bit 215 are outside the enclosure 155 in an environment that can be warmer than the environment inside the enclosure without degrading frozen samples. The motor 163 for the turntables 131 is also outside the enclosure. Because the motors 203, 207, 221, and 163 are outside the enclosure 155, they do not need to operate at the lower temperatures existing within the enclosure. For example, the motors 203, 207, 221, and 163 can operate at temperatures above freezing, more suitably at temperatures above about 10 degrees centigrade, and still more suitably at temperatures above about 20 degrees centigrade.
The rollers 197 also are positioned at an outer margin of the enclosure 155. For example, in the illustrated embodiment, the rollers 197 are spaced radially-outward of the temperature control block 153 where the temperature can be warmer than it is in the immediate vicinity of the temperature control block. As illustrated, the rollers 197 are positioned between the turntable and the enclosure 155. Accordingly, the moving parts of the turntable drive system 161 are positioned at the outer margin of the enclosure 155 or outside the enclosure. Accordingly, the rollers 197 and the rest of the turntable drive system 161 can operate at the warmer temperatures existing outside the enclosure 155 or at the margin of the enclosure instead of at the lower temperatures that may exist in the immediate vicinity of the temperature control block 153 and the frozen samples.
Referring to
The cleaning system 281 also includes a plunger cleaning sub-system 301 on the robot arm 129. The plunger cleaning sub-system 301 includes a plunger seal tube 303 positioned above the motor housing 305. The plunger 231 extends through a hollow center 307 of the plunger seal tube 303. The plunger seal tube 303 has a fluid inlet 311 for receiving one or more cleaning fluids into its hollow center 307 from a fluid supply line 313 connected to the fluid inlet. A sealing member 309 (e.g., an O-ring) at the top of the plunger seal tube 303 seals against the plunger 231 and limits fluid from flow from the hollow center 307 of the plunger seal tube 303 out the plunger seal tube through its top. The plunger seal tube 303 is selectively moveable by an actuator 315 (e.g., a pneumatic actuator) between a position in which the plunger seal tube is spaced slightly above a rotating spindle assembly 317 (
The spindle assembly 317 has a hollow central portion 321 extending from the top of the spindle assembly to the coring bit 215 that is in fluid communication with the hollow center of the coring bit. When the plunger seal tube 303 is moved into contact with the spindle assembly 317, the hollow center 307 of the plunger seal tube is in fluid communication (e.g., aligned with) the hollow central portion 321 of the spindle assembly 317 so fluid in the plunger seal tube can flow down into the spindle assembly and out through the hollow center of the coring bit 215. A sealing member 325 (e.g., an O-ring) forms a seal between the plunger seal tube 303 and the spindle assembly 317 when the plunger seal tube is in contact with the spindle assembly, to limit flow of fluid out of the plunger seal tube except through the spindle assembly. When the plunger seal tube 303 is in the position in which it does not contact the spindle assembly 317, the spindle assembly can rotate with the coring bit 215 without subjecting the sealing member 325 to any sliding or rubbing.
To use the cleaning system 281, the robot arm 129 moves the coring bit 215 into alignment with the opening 289 in the top of the cleaning station 283 (see
To clean the outside of the coring bit 215, cleaning fluid is pumped from a cleaning fluid supply (not shown) through the inlet 295 to inject cleaning fluid into the chamber 287 where it contacts the bit. After contacting the outside of the bit 215, the cleaning fluid exits the chamber through the drain 291. To clean the plunger 231 and inside of the coring bit 215, cleaning fluid is pumped from the same or a different cleaning fluid supply into the robot arm 129 through the plunger seal tube inlet 311 to inject cleaning fluid into the hollow center 307 of the plunger seal tube 303 where it contacts the plunger 231. The cleaning fluid flows from the plunger seal tube 303 into the hollow center 321 of the spindle assembly moving down along the plunger 231, cleaning it as it goes. The cleaning fluid then flows down through the hollow center of the coring bit 215 to clean the inside of the bit. After flowing out of the coring bit 215 into the chamber 287 of the cleaning station, the cleaning fluid is drained through the drain 291. The cleaning fluid is suitably alternately pumped to the cleaning station 283 to clean the outside of the coring bit 215 and then pumped to the robot arm 129 to clean the plunger 231 and inside of the bit 215. However, if desired cleaning fluid can be pumped to the cleaning station 283 and robot arm 129 concurrently within the scope of the invention. At any time during cleaning, the optional vibrator can be activated to agitate the cleaning fluid to help clean the coring bit 215. In some cases, the cleaning fluid may be clean water or another fluid that does not need to be rinsed off the coring bit 215 or plunger 231. If the cleaning fluid is something other than pure water, the cleaning fluid can be rinsed from the coring bit 215 and plunger 2313 if desired.
The cleaning system 281 optionally dries the coring bit 215 after cleaning it with the cleaning fluid. A drying gas (e.g., air, nitrogen, or other suitable gas) is suitably pumped from a drying gas supply (not shown) through the same fluid lines as the cleaning to inject drying gas into the chamber of the cleaning station and into the hollow center of the plunger seal tube to dry the inside and outside of the coring bit. When the sample is to be subjected to quantitative analysis it is important to dry the coring bit 215 after cleaning to prevent dilution of the frozen samples with the cleaning fluid. It is understood, however, the cleaning system is not required to dry the coring bit within the broad scope of the invention.
The system 101 includes a sample inspection system 341 adapted to detect one or more locations within a frozen sample from which a frozen sample core has already been taken. The sample inspection system can include any of a variety of sensors that can be adapted to detect holes in the sample from which frozen cores have already been taken. Suitable sensors and sensor systems that can be used in the sample inspection system 341 include an image analysis system, a vision inspection system, a con-focal imaging system, an optical profilometer, a time-of-flight distance sensor, an angle of incidence/reflection triangulation based distance sensor, and digital camera, and the like. The foregoing sensors and sensor systems can also be used in any combination to increase robustness of the sample inspection system.
For instance, one embodiment of a sample inspection system suitably includes a precision triangulation-based optical range finder 341 mounted on the robot arm 129. The range finder 341 is operable to direct a beam 342 of electromagnet radiation (e.g., an infrared laser beam) onto the upper surface of a frozen sample at the sample coring station 125 (see
Although the triangulation-based optical range finder works well in some cases, the inventors have discovered it does not work well when the physical characteristics of the sample cause it to reflect light in a diffuse manner. Some serum and plasma samples, for example, have characteristics that result in diffuse reflections. When the reflection is diffuse it is difficult or impossible to set the instrument settings so the signal from the sensor can be used to reliably detect any holes in a potentially-cored sample surface. Thus, the sample inspection system desirably includes a sensor that is operable to determine whether or not a potentially-cored surface of the sample has been cored at a particular location regardless of whether or not the sample reflects light in a diffuse manner.
Another embodiment of the sample inspection system includes a time-of-flight based precision range finder 341′ (
Although the time-of-flight sensor described above uses electromagnetic radiation, it is recognized an analogous acoustic based sensor that emits pulsed acoustic signals and detects echoes from the sample surface could be used in a similar manner within the scope of the invention.
In another embodiment of the system 101, the sample inspection system includes an imaging system (e.g., digital camera not shown) and processor that processes the image to determine if any cores have been taken from a sample. For example, various light/dark contrast algorithms can be used to analyze a complete image of the sample and identify the locations of any holes in the sample surface.
In still another embodiment of the system 101, the sample inspection system includes a processor programmed to analyze a smaller image of only a portion of the sample surface (or only a portion of a larger image of the entire surface) to make a binary decision (yes/no) about whether there are any holes in the sample that would prevent successful coring of the sample at that particular location. If there are no holes in the area immediate surrounding the potential drilling location, the sample inspection system allows the system to drill at that location. On the other hand, if the sample inspection system detects a hole in the vicinity of the potential drilling location, the robot arm and/or container are moved to assess whether or not a different location is suitable for being the location from which a frozen core is taken for use as an aliquot. The simpler yes/no algorithm is much easier to implement and eliminates the need for more elaborate image processing technology required to simultaneously identify the presence and locations of all holes that may exist in a sample.
The system 101 optionally includes a bar code reader 351 (e.g., mounted on the frame 181 as illustrated in
To further illustrate the various features of the system 101, one embodiment of a method of using the system to obtain one or more frozen aliquots from frozen samples by taking frozen sample cores will now be described. It is understood that the system 101 can be used in different ways without departing from the scope of the invention.
To start the process, a plurality of capped containers C containing frozen samples from which one or more aliquots are desired are placed in trays 135 and loaded on one of the turntables 131 (e.g., adjacent the sample coring station 125). A plurality of empty capped containers C for receiving the aliquots are placed in other trays 135 and loaded on one of the turntables 131 (e.g., adjacent the aliquot receiving station 127). For example, all of the frozen sample containers C can suitably be placed on one turntable 131 while all of the aliquot receiving containers are placed on the other turntable. However, it is understood that this is not required to practice the invention.
After the containers C are loaded on the system 101 the robot 103 begins taking the aliquots. The robot arm 129 moves into a position so one of the gripping mechanisms 251 is above a container C containing a frozen sample. The actuator 255 is activated to move the gripping arm 253 to the extended position. Then the robot arm is lowered until the fingers 257 of the gripping mechanism 251 are adjacent the sides of the cap 261. The finger actuator 259 is activated to move the fingers 257 into contact with opposing sides of the cap to grip the cap. The robot arm 129 is raised to lift the container C, moved to a position so the container is above the sample coring station 125, and then lowered to place the container on the sample coring station.
Once the container C is received in the receptacle 133 at the sample coring station 125, the turntables 131 are rotated to align the toggle mechanism actuator 277 with the clamp button 279a on the toggle mechanism 275. The toggle mechanism actuator 277 is extended to push the clamp button 279a on the toggle mechanism and thereby clamp the container at the sample coring station to hold it in a fixed position relative to the turntable 131. While the container C is clamped and the gripping mechanism 251 is still holding the cap, the turntables 131 are rotated to unscrew the cap 261 from the container. The robot arm 129 can be raised as the cap is being unscrewed so the gripping mechanism 251 does not press down on the cap 261 while it is being unscrewed. After the cap 261 is unscrewed, the robot arm 129 is raised further and the gripping arm 253 is retracted by the actuator 255 while still holding the cap.
The process is repeated using the other gripping mechanism to move the aliquot receiving container to the aliquot receiving station 127 on the other turntable 131. At this point, the sample container C is uncapped and clamped in position at the sample coring station 125 and the aliquot receiving container is uncapped and clamped at the aliquot receiving station 127. The caps 261 for the containers are retained by the retracted gripping mechanism.
The sample inspection device 241 is used to inspect the upper surface of the frozen sample in the container C at the sample coring station 125 to determine whether any previous frozen sample cores have been taken from the frozen sample. If frozen sample cores have already been taken from the frozen sample, the sample inspection device 341 also determines the locations within the sample from which the frozen cores have been taken, and by a process of elimination identifies one or more positions from which another frozen core can be taken.
The robot arm 129 moves the coring bit into position above the sample container at the sample coring station 125. In particular, the robot arm 129 moves the bit into a position above a portion of the sample from which no frozen samples cores have been taken yet. In one example, the location from which the frozen sample core is to be taken is selected to be at a radial position where the concentration of at least one substance of interest in the frozen sample core is representative of the overall concentration of said at least one substance of interest in the sample notwithstanding any concentration gradients that may exist in the frozen sample.
The present inventors have recognized that radial concentration gradients can develop in a biological sample as it is being frozen. In order to ensure the concentration of the substance of interest in the aliquot is representative of the concentration of that substance in the original unfrozen sample, it may be necessary to take the frozen sample core from a position that is radially offset from the center axis of the sample. The position at which the local concentration in the frozen sample is representative of the overall concentration can vary depending on the characteristics of the sample and the substance of interest and can be determined experimentally for any particular type of sample and substance of interest.
It is also recognized that two or more frozen sample cores can be taken from different radial positions in the sample that are selected so an aggregate aliquot formed by combining the multiple frozen sample cores has a concentration of a substance of interest that is representative of the concentration of that substance in the original unfrozen sample. For example, a first frozen sample core can be taken from position at which the local concentration of the substance of interest is known to be too high to be representative of the overall sample and a second frozen sample core can be taken from a position at which the local concentration of the substance of interest is too low to be representative of the overall sample. However, the positions from which the first and second sample cores are taken can be selected so when the first and second sample cores are combined in a single aggregate aliquot the concentration of the substance of interest in the aggregate aliquot is representative of the overall concentration of the substance of interest in the original sample.
The high-precision positioning system 121 facilitates taking the frozen sample core from the desired location with a high degree of accuracy. This capability can be important when the aliquots are to be used in quantitative tests (i.e., tests in which the concentration or relative concentration of one or more substances is needed). Those skilled in the art will recognize that for some tests, it is only necessary to know whether or not a particular substance is present and the precise concentration at which it is present is not that important. Accordingly, it is not necessary to take the frozen sample core from any particular position within the sample within the broad scope of the invention.
The coring bit motor 221 turns the coring bit 215 as the robot arm 129 is lowered to move the tip of coring bit 215 from the upper surface of the sample down into the frozen sample. In one embodiment of the method, the coring bit 215 is lowered substantially all the way to the bottom of the container C to obtain a frozen sample core extending substantially all the way through the vertical height of the sample at the location from which the frozen sample core is taken. This can be desirable to account for any vertical concentration gradients that may exist in the sample.
Once the drilling process is complete, the motor 221 is deactivated to stop rotation of the coring bit 215. Then the robot arm 129 is raised to lift the coring bit and the frozen sample core contained therein out of the sample container. The robot arm 129 is then moved to position the coring bit 125 and the frozen sample core contained therein to a position above the aliquot receiving container at the aliquot receiving station 127. The plunger actuator 235 is activated to eject the sample core from the coring bit 215 into the aliquot receiving container.
Once the frozen sample core is in the aliquot receiving container, the robot 103 screws the caps 261 back onto the sample container and the aliquot receiving container using the gripping mechanisms 251 to hold the caps stationary while the turntables 131 are rotated to rotate the clamped containers. The robot arm 129 may move down during the process of screwing the cap 261 back on the containers to track downward movement of the cap as it is screwed on the container. After the caps 261 are back on the containers, the turntables 131 are rotated to align the toggle mechanism actuator 277 with the release buttons 279b on the toggle mechanisms 275. The actuators 277 are extended to press the release buttons 279b and unclamp the containers C so they can be removed from the sample coring and aliquot receiving stations 125, 127. Then the robot arm 129 is moved to position the gripping mechanisms 251 over the containers C to pick them up and move them back to the temporary storage positions 123 on the turntables. In this embodiment of the method, the containers C are only uncapped at the sample coring station 125 or aliquot receiving station 127. The containers C are always capped when they are at any of the storage positions 123.
If more than one aliquot is needed from the same sample, the process is substantially the same except the robot 103 leaves the sample container C at the sample coring station 125 while it removes the first aliquot receiving container from the aliquot receiving station 127 and replaces it with another aliquot receiving container. Then the robot 103 obtains another frozen sample core from the sample and places it in the second aliquot receiving container. This process can be repeated to obtain three, four or more aliquots from a single sample during one aliquotting session, as long as there is sufficient sample material for the aliquots. It is also possible to place multiple frozen sample cores into a single aliquot receiving container (e.g., to obtain a larger volume of sample material) within the scope of the invention.
The cleaning system 281 is then used to clean the coring bit 215 and plunger 231 in the manner described above. After cleaning, the process can be repeated with a different sample. After all the aliquots to be taken from the samples loaded on the system 101 have been taken, the trays 135 are removed from the turntables. The still frozen samples are returned to the cryogenic storage so they will be available in the future if there is a desire to obtain another aliquot for use in a different test. The aliquots are taken from the system 101 and delivered to customers of the biobank or biorepository for testing.
It will be appreciated from the foregoing that the system 101 is able to accomplish one or more (e.g., all) of the following tasks using only three precision motion control devices (the servo-controlled turntable motor 161, the servo-controlled rotary stage 203 for moving the robot arm 129 in the θ direction, and the servo-controlled linear stage 207 for moving the robot arm in the z-direction) to control positioning of the relevant structures:
Another feature of the system 101 is the processor is suitably adapted to accept input from a user and operate the system in one of multiple different modes selected by the user For example, the processor is suitably programmed and/or hardwired to operate in various modes differing from one another in one of more of the following parameters:
The ability to operate in different modes allows users the flexibility to select a mode designed to facilitate taking frozen sample cores from the frozen samples while limiting the risk and/or extent of physical damage to the sample resulting from the coring process. The variables listed above for the modes can influence the propensity of the frozen sample to crack or otherwise break, be heated by friction, partially melt, or experience other effects that degrade the sample and/or limit the number of frozen sample cores that can be taken from a particular frozen sample. The optimal settings for the variables identified above can vary depending on the characteristics of the frozen sample, the characteristics of the container, the temperature of the frozen samples, and other variables. For example, one mode of operation can be adapted to facilitate taking aliquots from frozen serum sample cores without cracking or otherwise damaging the frozen serum samples and another mode can be adapted to facilitate taking frozen sample cores from frozen plasma samples without cracking or otherwise damaging the frozen plasma samples.
Having described the invention in detail, it will be apparent that modifications and variations are possible without departing from the scope of the invention defined in the appended claims.
When introducing elements of the present invention or the preferred embodiment(s) thereof, the articles “a”, “an”, “the”, and “said” are intended to mean that there are one or more of the elements. The terms “comprising”, “including”, and “having” are intended to be inclusive and mean that there may be additional elements other than the listed elements.
As various changes could be made in the above constructions, products, and methods without departing from the scope of the invention, it is intended that all matter contained in the above description and shown in the accompanying drawings shall be interpreted as illustrative and not in a limiting sense.
| Filing Document | Filing Date | Country | Kind | 371c Date |
|---|---|---|---|---|
| PCT/US11/61214 | 11/17/2011 | WO | 00 | 4/24/2014 |
| Number | Date | Country | |
|---|---|---|---|
| 61418688 | Dec 2010 | US |
