The present invention relates generally to an apparatus, method and system for creating, collecting and indexing seed portions from individual seed in an efficient way.
It is conventional practice in plant breeding or plant advancement experiments to grow plants from seed of known parentage. The seed are planted in experimental plots, growth chambers, greenhouses, or other growing conditions in which they are either cross pollinated with other plants of known parentage or self pollinated. The resulting seed are the offspring of the two parent plants or the self pollinated plant, and are harvested, processed and planted to continue the plant breeding cycle. Specific laboratory or field-based tests may be performed on the plants, plant tissues, seed or seed tissues, in order to aid in the breeding or advancement selection process.
Generations of plants based on known crosses or self pollinations are planted and then tested to see if these lines or varieties are moving towards characteristics that are desirable in the marketplace. Examples of desirable traits include, but are not limited to, increased yield, increased homozygosity, improved or newly conferred resistance and/or tolerance to specific herbicides and/or pests and pathogens, increased oil content, altered starch content, nutraceutical composition, drought tolerance, and specific morphological based trait enhancements.
As can be appreciated and as is well known in the art, these experiments can be massive in scale. They involve a huge labor force ranging from scientists to field staff to design, plant, maintain, and conduct the experiments, which can involve thousands or tens of thousands of individual plants. They also require substantial land resources. Plots or greenhouses can take up thousands of acres of land. Not only does this tie up large amounts of land for months while the plants germinate, grow, and produce seed, during which time they may be sampled for laboratory or field testing, but then the massive amounts of seed must be individually tagged, harvested and processed.
A further complication is that much of the experimentation goes for naught. It has been reported in literature that some seed companies discard 80-90% of the plants in any generation early on in the experiment. Thus, much of the land, labor and material resources expended for growing, harvesting, and post-harvest processing ultimately are wasted for a large percentage of the seed.
Timing pressures are also a factor. Significant advances in plant breeding have put more pressure on seed companies to more quickly advance lines or varieties of plants for more and better traits and characteristics. The plant breeders and associated workers are thus under increasing pressure to more efficiently and effectively process these generations and to make more and earlier selections of plants which should be continued into the next generation of breeding.
Therefore, a movement towards earlier identification of traits of interest through laboratory based seed testing has emerged. Seed is non-destructively tested to derive genotypic information. If traits of interest are identified, the selected seed from specific plants are used either for further experiments and advancement, or to produce commercial quantities. Testing seed prevents the need to grow the seed into immature plants, which are then tested. This saves time, space, and effort. Effective, early identification of desirable traits in seed can lead to greatly reducing the amount of land needed for experimental testing, the amount of seed that must be tested, and the amount of time needed to derive the information needed to advance the experiments. For example, instead of thousands of acres of plantings and the subsequent handling and processing of all those plants, a fraction of acres and plants might be enough. However, because timing is still important, this is still a substantial task because even such a reduction involves processing, for example, thousands of seed per day.
A conventional method of attempting non-lethal seed sampling is as follows. A single seed of interest is held with pliers above a sheet of paper laid out on a surface. A small drill bit is used to drill into a small location on the seed. Debris removed by the drill bit from the seed is collected on the sheet of paper. The paper is lifted and the debris is transferred to a test tube or other container. The debris is thus collected and ready for laboratory analysis. The seed is stored in another container. The two containers, housing the seed and sample, are indexed or correlated for tracking purposes. This method is intended to be non-lethal to the seed. However, the process is slow. Its success and effectiveness depends heavily on the attention and accuracy of the worker. Each single seed must be manually picked up and held by the pliers. The drilling is also manual. Care must be taken with the drilling and the handling of the debris, as well as insuring that the full sample amount is transferred into a container and the seed from which the sample was taken into another container. These two containers, e.g. the individual test tubes, must then be handled and marked or otherwise tracked and identified. Additionally, the pliers and drill must be cleaned between the sampling of each seed. There can be substantial risk of contamination by carry-over from sample to sample and the manual handling. Also, many times it is desirable to obtain seed material from a certain physiological tissue of the seed. For example, with corn seed, it may be desirable to take the sample from the endosperm. In such cases, it is not trivial, but rather time-consuming and somewhat difficult to manually grasp a small corn seed is such a way to allow the endosperm to be oriented to expose it for drilling. Sampling from other seed structures such as the seed germ must be avoided because sampling from such regions of the seed negatively impacts germination rates. Sometimes it is difficult to obtain a useful amount of sample with this method. In summary, sampling from seed relies heavily on the skill of the worker and is relative to throughput and accuracy, including whether the procedure gives the seed a good chance at germination. These issues are amplified when a worker is charged with processing many seed a day.
As evidenced by these examples, present conventional seed analysis methods, such as is used in genotypic analysis, require at least a part of the seed to be removed and processed. In removing a portion of the seed, various objectives may need to be met. These may include one or more of the following objectives:
(a) maintain seed viability post-sampling if required;
(b) obtain at least a minimum required sample amount, without affecting viability;
(c) obtain a sample from a specific location on the seed, often requiring the ability to efficiently position and orient the seed in a specific position and orientation for sampling;
(d) maintain a particular throughput level for efficiency purposes;
(e) reduce or virtually eliminate contamination between samples;
(f) maintain an efficient and controlled post-sampling handling regimen and environment to move and collect seed portion and seed after sampling; and
(g) allow for the tracking of separate samples and their correlation to other samples in a group.
(a) Viability
With regard to maintaining seed viability, it may be critical in some circumstances that the seed sampling method and apparatus not damage the seed in such a way that seed viability is reduced. It is often desirable that such analysis be non-lethal to the seed, or at least result in a substantial probability that the sampled seed will germinate (e.g. no significant decrease in germination potential) so that it can be grown into a mature plant. For some analyses, seed viability does not need to be maintained, in which case larger samples can often be taken. The need for seed viability will depend on the intended use of the seeds post-sampling. Therefore, there is a need to preserve the viability of the seed by providing seed sampling and handling apparatus, methods and systems of the present invention.
(b) Sample Amount
It is desirable to obtain a useful amount of sample. To be useful, in some applications it must be above a certain minimum amount necessary in order to perform a given test and obtain a meaningful result. Different tests or assays require different sample amounts. It may be equally important to avoid taking too much tissue for a sample, because a sample that is too large may reduce germination potential of a seed, which may be undesirable. Therefore, it is desirable that sampling apparatus, methods and systems allow for variation in the amount of sample taken from any given seed.
(c) Sample Location
A useful sample amount also can involve sample location accuracy. For example, in some applications the sample must come only from a certain location or from certain tissue. Further, it is difficult to handle small seed. It is also difficult to accurately position and orient seed. On a corn seed, for example, it may be important to sample the endosperm tissue, and orient the corn seed for sampling that particular tissue. Therefore, it is desirable that the sampling apparatus, methods and systems are adapted to allow for high throughput seed positioning and orientation of seed for location-specific sampling, which may include seed orientation apparatuses, methods and systems with geometries, architecture and steps adapted to position and orient seed in a predetermined orientation.
(d) Throughput
A sampling apparatus and methodology must consider the throughput level that supports the required number of samples being taken in a time efficient manner. For example, some situations involve the potential need to sample thousands, hundreds of thousands, or even millions of seed per year. Taking the hypothetical example of a million seed per year, and a 5-day work week, this would average nearly four thousand samples per day for each working day of a year. It is difficult to meet such demand with lower throughput sampling methods. Accordingly, higher throughput, automatic or even semi-automatic apparatuses, methods and systems are desirable.
(e) Avoiding Contamination
It is desirable that a sampling methodology, system and apparatus not be prone to cross-contamination in order to maintain sample purities for subsequent analytical testing procedures. This can involve not only sample location accuracy, such that a sample from a given location is not contaminated with tissue from a different location, but also the method of sampling and the handling of each individual sample, ensuring no contamination between samples.
(f) Handling (Post-Sampling)
With higher throughput as an objective, it is important that consideration be given to maintaining an efficient and controlled post-sampling handling regimen and environment to move and collect the seed portion and seed after sampling. Such post-sampling operations should ensure each operation is devoid of contamination. Depending on the tool used to remove a portion of the seed, such as a laser, further consideration need to be given to how the seed and seed portion are handled and collected to insure viability is preserved, contamination is limited, and accurate high throughput separation of seed and seed portions is maintained.
(g) Indexing (Tracking) Sample and Sampled Seed
Efficient processing of seed and samples removed from seed presents a variety of issues and challenges, especially when it is important to keep track of each seed, each sample, and their correlation to each other, or to other samples. Accordingly, it is desirable that sampling apparatus, methods and systems allow for easy tracking and correlation of seed and their samples.
Conventional seed sampling technologies do not address these requirements sufficiently, resulting in pressures on capital and labor resources, and thus illustrate the need for an improvement in the state of the art. The current apparatuses, methods and systems are relatively low throughput, have substantial risk of cross-contamination, and tend to be inconsistent because of a reliance on significant manual handling, orienting, removal, post-handling, tracking and correlation of the sample and the seed. This can affect the type of sample taken from the seed and the likelihood that the seed will germinate. There is a need to eliminate the resources current methods require for cleaning between samples. There is a need to reduce or minimize cross-contamination between samples by carry-over or other reasons, or any contamination from any source of any sample. There is also a need for more reliability and accuracy. There is a further need to provide high throughput handling means for the seed and seed part. Accordingly, there is a need for methodologies and systems and their corresponding apparatuses which provide for seed sampling that accomplishes one or more of the following objectives:
(a) maintain seed viability post-sampling if required;
(b) obtain at least a minimum required sample amount, without affecting viability;
(c) obtain a sample from a specific location on the seed, often requiring the ability to efficiently position and orient the seed in a specific position and orientation for sampling;
(d) maintain a particular throughput level for efficiency purposes;
(e) reduce or virtually eliminate contamination between samples;
(f) maintain an efficient, high throughput and controlled post-sampling handling regimen and environment to move and collect the seed portion and seed after sampling; and
(g) allow for the tracking of separate seed parts and their correlation to other samples in a group.
Some of these objectives that are desirable when sampling seed can be conflicting and even antagonistic. For example, high throughput methodologies may require relatively rapid operation but with relatively high accuracy and low contamination risk, such that they must be done more slowly than is technically possible. These multiple objectives have therefore existed in the art and have not been satisfactorily addressed or balanced by the currently available apparatuses, methods and systems. There is a need in the art to overcome the above-described types of problems such that the maximum number of objectives is realized in any given embodiment.
Apparatuses, methods and systems for positioning, orienting, creating, handling, collecting, and indexing seed portions, including viable seed portions, from plant seed is disclosed. In one general example of the apparatus, the apparatus includes a carrier having a feature for positioning and orienting seeds, seed portions or the like. Seed portions may be taken from seed in carrier. One or more manifolds aid in separating, collecting and indexing seed and seed portions in an efficient and high throughput manner.
A general example of a method for positioning, orienting, creating, handling, collecting, and indexing seed portions, including viable seed portions, from plant seeds is also disclosed. The method may include positioning and orienting seed relative to carrying positions within a carrier, ablating the seed with a seed ablation device, separating, collecting and indexing seed and seed portions using a manifold, a collector and compartment layer.
A general example of a system for positioning, orienting, creating, handling, collecting, and indexing seed portions, including viable seed portions, from plant seeds is also disclosed. The system may include a carrier adapted to retain seed in a desirable position and orientation and release seed or seed parts from the desired position and orientation in a high through put manner. The system may also include a seed ablation device, a manifold adapted to handle, collect and index seed and seed portions (post-sampling) into one or more containers.
An apparatus for automated positioning, orienting, handling, collecting and indexing seed samples is also disclosed. The apparatus includes automated methods and systems to handle, separate and collect seed and seed parts in an indexed manner with minimal human intervention, thereby increasing the handling and separation efficiency and throughput of seed and their seed parts while reducing the chance of contamination.
Overview
For a better understanding of the invention, several exemplary embodiments will now be described in detail. It is to be understood that these are but several forms the invention can take and do not limit the invention. Reference will be taken from time-to-time to the appended drawings. Reference numerals are used to indicate certain parts and locations in the drawings. The same reference numerals will indicate the same parts and locations throughout the drawings unless otherwise indicated.
The context of these specific examples will be with respect to kernels of corn. It is to be understood, however, that this example is only intended to illustrate one application of the invention. The invention can be utilized for other seed and other objects. The range of sizes can vary as well as the nature of the object. As will be understood by one of skill in the art, the embodiments of the invention will be used with seed that are of convenient size to be sampled. Some seed are extremely fine and small, somewhat like dust particles or grains of salt, while others are particularly large and hard, such as the seed from the Lodoicea maldivica palm, which are 20 to 24 pounds in weight. One of skill in the art recognizes that seed intended to be used with the embodiments of the invention must be of a size and weight that allow convenient sampling with the apparatus of the embodiments. Such seed include, but are not limited to, many agriculturally important seed such as seed from maize (corn), soybean, Brassica species, canola, cereals such as wheat, oats or other grains, and various types of vegetable and ornamental seed. Analogous applications will be obvious from this example and variations obvious to those skilled in the art will be included.
Reference will be made to samples taken from a seed as seed crowns. The seed crown that has been taken can also be referred to using different terms, such as, for example, seed portion, seed sample, seed tissue sample, seed chip, seed snip, seed sliver, seed clip or clipping, and viable seed portion. The use of the term crown is with specific reference to kernels of corn according to the preferred embodiment, but it is appreciated that other portions of a corn kernel or other seed source may be utilized according to the present invention.
Method
The apparatus herein described is for use with the method generally shown in
The above described method is the preferred embodiment of the invention, but additional steps or alternative means might be used to accomplish the object of the invention. For instance, the seed crown 84 may be held in the apertures 30 by a pressure differential, interference fit, vacuum, adhesive, tray, electromagnet, or other such means. Also, while the slidable walls 40 are preferably displaced by actuating a pneumatic cylinder, other alternatives might be used. The tabs 46 might be pushed or pulled by a motor, pneumatic or hydraulic piston, or manual operation. Alternative means of holding the seed crown 84 within the aperture 30 allows for alternative means of removal. A pressure differential or vacuum holding may be released by a shutoff valve, pressure switch, manual operation, or automated timer. An interference fit hold may be released by manual or mechanical operation. An adhesive hold may be released by chemical, manual, or mechanical interaction with either the seed crown or the adhesive. A tray may be displaced by pushing or pulling the tray according to mechanical, pneumatic, hydraulic, manual, or automated means. Instead of permanent magnets, temporary electromagnets might be used as a holding means, and may be released by manual or automated interaction with an electrical circuit to disrupt the magnetic charge. Alternatively, the electromagnets could be displaced, as in the preferred embodiment. The above described alternatives to the preferred embodiment are merely examples, and other means not discussed may be used to accomplish the objects of the invention.
Additional steps may also be present in the method which are not part of the process of singulating, ablating, and indexing the seed. The various parts of the apparatus may be cleaned after each use to prevent cross contamination of genetic material between seed samplings. An identifier, such as a tag, label, RFID, bag, or other such marker may be associated with the carrier 20 and attached to the collector 70 after the seed crowns 84 are deposited therein. If the seed crowns 84 become lodged within the second manifold 60, the second manifold 60 may be removed from the apparatus 10 such that the seed crowns 84 may be dislodged. Once the seed crowns 84 are deposited within the collector 70, the collector 70 would be moved to a laboratory setting where the seed crowns would be tested according to a preferred means. Apparatuses, methods and systems for coating the seeds with a magnetically active coating is shown and described, for example, in U.S. application Ser. No. 12/419,690, filed Apr. 7, 2009, which application is assigned to the owner of the present application and incorporated by reference herein in its entirety.
Apparatus
Specific reference will now be made to the apparatus 10 as shown in
As shown in
As shown in
Turning now to
The conduits 56 taper at a certain angle from the top end 52 to the bottom end. The angle at which the conduits 56 converge is determined by the relative sizes of the carrier 30 and the collector 70, as well as the height of the manifold 50. This angle of convergence must be controlled so as to allow seed crowns 84 to fall through the manifold 50 without significant contact between the seed crown 84 and the sidewalls of the conduits 56. A steeper angle of convergence permits the seed crown 84 to fall too fast, increasing the likelihood that the seed crown 84 becomes lodged in either the first 50 or second manifold 60. Conversely, a shallow angle of convergence increases the contact between the seed crown 84 and the sidewall of the conduit 56. This increased contact may result in abrasion of the seed crown 84, increasing the likelihood of cross contamination between successive seed samplings. Additionally, the abrasion reduces the speed at which the seed crown 84 falls through the first manifold 50, increasing the cycle time of the method, and potentially resulting in the seed crown 84 becoming lodged in the first manifold 50. Either of these two situations are undesirable, the convergence angle has been chosen in order to minimize the risk of the seed crown 84 becoming stuck within the manifold 50. The first manifold 50 also need not have a convergence angle, and the seed crowns 84 may fall cleanly through the first manifold 50 to the second manifold 60. As will be discussed for the second manifold 60, the conduits 56 of the first manifold may reduce in diameter along the length of the manifold 50. Additionally, the number and arrangement of the conduits 56 need not correspond to the number and arrangement of the apertures 30 in the collector 20.
As shown in
While the passages 62 of the second manifold 60 are shown to taper in size, non-tapering passages are also contemplated. In certain circumstances, it may be preferable not to reduce the size of the passages, for example if larger seed samplings are collected. The passages 62 may also converge upon one another, as described for the first manifold 50. The second manifold 60 may also have a number of passages 62 not corresponding to the number and arrangement of the conduits 56 in the first manifold 50. Also, while the second manifold 60 is described as commensurate in size with the bottom end 54 of the first manifold 50. This is not required, and the second manifold 60 may be of any size and shape sufficient to carry out the objects of the invention, or the second manifold 60 may be incorporated into the first manifold 50.
Further, according to the preferred embodiment, the second manifold 60 may be removed from the apparatus 10, while still being attached to the collector 70 through the flanges 64, allowing ease of removing seed crowns 84 which may become stuck in the second manifold 60 from the second manifold 60 to the proper chamber 72. The flanges 64 also provide a means by which the collector 70 is properly aligned with the passages 62 of the second manifold 60.
Other means of temporarily connecting the second manifold 60 to the collector 70 are anticipated by this invention. Several examples of fastening and aligning the collector 70 and second manifold 60 include, tabs, slots, studs, raised surfaces, interference fits, permanent or electromagnets, electrical interface, manual alignment, or any other means which is commonly known in the art. Additionally, it may be preferable to have the second manifold 60 and collector 70 unattached, for example in high throughput operations or utilizing other seed sampling techniques where there is little risk of the seed sample being stuck within the passages 62 of the second manifold 60.
The collector 70 is shown in
As shown in
Each of the elements of the invention above described may be made of any material known to those in the art. Preferably, the first plate 22 and second plate 24 on the seed carrier 20 are formed of aluminum, while the base 42 is formed of plastic. The magnets 44 are preferably the only magnetically conductive material in the apparatus. The first and second manifolds 50, 60 may be formed of either aluminum, plastic, or other non-magnetically reactive material. Further, the apparatus 10 is supported by a frame 94 also formed of a non-magnetically reactive material. The purpose of the elements of the apparatus 10 having non-magnetically reactive components is to ensure that the seed crowns 84 fall from the seed carrier 20 cleanly through the first manifold 50 and second manifold 60 to the collector 70. As is generally known in the art, magnetically reactive materials such as the paint 82 used on the seeds 80 is capable of acquiring a lasting magnetic charge, and if the components of the apparatus 10 were composed of magnetically reactive material, a seed crown 84 might become stuck within the apparatus 10.
As has been previously discussed, the use of magnets to hold the seed crowns 84 within the apertures 30 is preferred, but not required. Alternative means, such as vacuum or interference fit would not require the components of the invention to be formed of non-magnetically conductive materials. Specific reference has been made to the use of magnets in order to attach and align the collector 70 to the second manifold 60. In such an arrangement, at least part of either the collector 70 or the second manifold 60 would be formed of a magnetically conductive material. Additionally, if the angle of convergence of the conduits 56 in the first manifold 50 is sufficiently steep, the concern of seed samples becoming stuck in the manifold might be overcome. Therefore, while it is preferable to utilize lightweight and non-magnetically reactive materials in order to accomplish the objects of the invention, such use is not required to practice the claimed invention.
While the apertures 30 in carrier 20 and chambers 74 in collector 70 are shown to be arranged in rows and columns, the number of rows and columns being equal in number between the carrier 20 and collector 70, this is not required. It may be desirable to arrange the apertures 30 according to alternative means, such as indexing by angle and distance, or according to a hexagonal or other close packing arrangement, or any other means known in the art. Further, it is not necessary for the number or arrangement of apertures 30 to match the number or arrangement of chambers 74. For example, it might be desirable to have a collector 70 with sufficient chambers 74 to collect multiple batches of seed crowns 84, or existing processes might require a different arrangement of apertures 30 and chambers 74.
System
The system herein described uses one or more of the apparatuses shown generally in
The above described system is a preferred embodiment of the invention, but additional or alternative systems could be used to accomplish one or more of the objects of the invention. For instance, the system may be configured so that the seed crown 84 is held in the apertures 30 by a pressure differential, interference fit, vacuum, adhesive, tray, electromagnet, or other such means. Also, while the slidable walls 40 are preferably displaced by actuating a pneumatic cylinder, other alternatives might be used. The walls 40 might be pushed or pulled by a motor, pneumatic or hydraulic piston, or manual operation in other aspects of the system. Alternative means of holding the seed crown 84 within the aperture 30 allows for alternative means of removal. A pressure differential or vacuum holding may be released by a shutoff valve, pressure switch, manual operation, or automated timer. An interference fit hold may be released by manual or mechanical operation. An adhesive hold may be released by chemical, manual, or mechanical interaction with either the seed crown or the adhesive. In another system, a tray may be displaced by pushing or pulling the tray according to mechanical, pneumatic, hydraulic, manual, or automated means. Instead of permanent magnets, temporary electromagnets might be used as a holding means, and may be released by manual or automated interaction with an electrical circuit to disrupt the magnetic charge. Alternatively, the electromagnets could be displaced, as in the preferred embodiment. The above described alternative systems are merely examples, and other means or systems not discussed may be used to accomplish the objects of the invention.
Additional steps may also be present in the systems which are not part of the process of singulating, ablating, and indexing the seed. The various parts of the system(s) may be cleaned after each use to prevent cross contamination of genetic material between seed samplings. An identifier, such as a tag, label, RFID, bag, or other such marker may be associated with the carrier 20 and attached to the collector 70 after the seed crowns 84 are deposited therein. If the seed crowns 84 become lodged within the second manifold 60, the second manifold 60 may be removed from the collecting apparatus 10 such that the seed crowns 84 may be dislodged. Once the seed crowns 84 are deposited within the collector 70, the collector 70 would be moved to a laboratory setting where the seed crowns would be tested according to a preferred means. Apparatuses, methods and systems for coating the seeds with a magnetically active coating are shown and described, for example, in U.S. application Ser. No. 12/419,690, filed Apr. 7, 2009, which application is assigned to the owner of the present application and incorporated by reference herein in its entirety
The above described apparatus and system for separating a seed crown from a seed body in order to preserve a seed sample adequate for planting is in representative capacity only and is not intended to limit the scope of the invention. Limitations of the present invention shall appear in the claims.
This application claims priority under 35 U.S.C. §119 to provisional application Ser. No. 61/090,975 filed Aug. 22, 2008, which application is hereby incorporated by reference in its entirety.
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