Embodiments of the invention generally relate to an arrangement for integrated and automated DNA or protein analysis in a single-use cartridge. Herein, a flat card in check card format is described as a cartridge. In addition, embodiments of the invention generally relate to the production of such a cartridge. Finally, embodiments of the invention also generally relate to an operating method for DNA or protein analysis using such a cartridge.
For nucleic acid analysis, for example for the analysis of white blood cells from whole blood with the aim of answering human genome questions, firstly, in a first stage as the sample preparation step, the cells must be broken up and then the DNA thus liberated must be isolated. In a second stage, a PCR (Polymerase Chain Reaction) for selective DNA multiplication (amplification) is performed in order to increase the concentration of the DNA to be detected sufficiently for it to be detectable in a third stage.
In the laboratory, the latter component processes are carried out separately according to the known state of the art. The three stages mentioned above each include several working steps and are carried out independently of one another with different equipment. The individual work steps are largely performed manually.
The implementation of these steps is dependent on the presence of laboratory equipment—such as a cell disintegration apparatus, a PCR device (so-called thermocycler), possibly a PCR device which is suitable for quantitative PCR, an electro-phoresis apparatus, a hybridization stage, an optical reader, so-called Eppendorf tubes, several pipetting devices and a refrigerated container for reagents, and must be carried out by trained personnel with observation of safety procedures with regard to infection risk, waste disposal or the like. In particular, several volumetric, i.e. accurate, dispensings (pipettings) of reagent solutions must be performed. Such work steps are time-consuming and cost-intensive.
From the state of the art, devices for biochemical analysis are known which according to WO 02/073153 A1 make use in particular of silicon-based measurement modules, which can be integrated into a chip card. Moreover, according to WO 02/072262 A1, the reagents used for the analysis are already integrated into the analysis module in dry-stored form.
At least one embodiment of the invention is directed to the implementation of an inexpensive, simply manageable, complete DNA or protein analysis process in a miniaturized cartridge. In particular in at least one embodiment, the following improvements compared to the laboratory method should be implemented:
At least one embodiment of the invention is in particular based on WO 02/072262 A1 and the further state of the art mentioned there. Therein is described an analytical device with reagents stable at room temperature, dry-stored in fluid channels, which are brought into solution through the introduction of water shortly before their use as intended. At least one embodiment of the invention is further based on the unpublished DE 10 2004 021780 A1 and the unpublished DE 10 2004 021822 A1. In addition, the specific use of electrically readable detection modules is also known.
In contrast to this, an object of at least one embodiment of the invention is such a single-use cartridge with a system of microchannels and/or microcavities for a predefined process sequence after sample uptake, wherein the cartridge has structures to accommodate the dry reagents and devices for the implementation both of the cell disintegration on the one hand and of the PCR on the other, but also of the electrochemical detection, are allocated to these structures. In particular, the channels therein have different, problem-adapted structures. Specifically, the disintegration channel advantageously has stepped cross-sections for optimal wetting with the dry reagent, while the PCR chamber and the Elisa reagent channels have pot-shaped depressions.
It can thus be achieved that the introduction and preparation of the sample, the DNA amplification and the actual detection of the DNA is possible in the course of one process.
By way of the system of geometric structures in the micro-channels or microcavities to accommodate dry reagents according to at least one embodiment of the invention, suitable conditions are obtained for DNA analysis on the one hand and protein analysis on the other. In at least one embodiment, the following features and measures are essential:
In at least one embodiment of the invention, the reagents and additives are already introduced as dry substances into depressions of the cartridge channels during production. The following advantages result from this:
In a further example embodiment, the depressions are located at predefined intervals along the reagent channel. Here, the intervals can be equidistant or particularly advantageously can be arranged in variable spacing patterns.
The depressions can advantageously be filled with variable quantities of dry reagent. Through the combination of different amounts of dry reagent and spacing patterns of the depressions, the desired concentration profiles of the finished reagent solutions can be established.
For certain functions, such as for example cell disintegration in the presence of magnetic beads and lysis reagents, an even distribution of the insoluble components, i.e. the beads, in the dry reagent is necessary. For this, the magnetic beads are dispensed into the lysis channel as a suspension. On evaporation of the solvent, it is observed that the beads are drawn back into the edge region of the lysis channel and an even distribution does not result from this. Through stepped structuring of the lysis channel cross section, the magnetic beads distribute themselves across the steps and an even distribution is achieved.
In order that a cell disintegration, a PCR and a so-called DNA/protein ELISA test can equally be performed with the cartridge according to the invention, it is advantageous that substrates with DNA-binding properties, in particular the DNA-binding magnetic beads, be present in the microchannels or microcavities. Here, the lysis reagents and the magnetic beads can be contained together in a single dry matrix. Further, the reagents for an ELISA assay are also present in the card. In particular, for the ELISA assay two reagents are needed, i.e. a labeling enzyme as the first reagent and an enzyme substrate as the second reagent.
In particular, a detection module for the electrical detection of the hybridization processes is arranged in the cartridge. The detection module advantageously consists of a noble metal/plastic composite or a semiconductor-processed silicon chip with noble metal electrodes. Especially suitable for electric detection here are electrochemical, magnetic or piezoelectric measurement procedures.
For the application of at least one embodiment of the invention, in particular an input port for a whole blood sample is present in the cartridge according to at least one embodiment of the invention. Moreover, device(s) for the addition of water are present, for example inlet ports for connection to an external water supply or an integrated water reservoir. In the microchannels or microcavities, dry buffer substances have defined ionic strength after the addition of water.
In the application of at least one embodiment of the invention for the analysis of white blood cells from whole blood, device(s) for mixing of a whole blood sample with water or a buffer solution are advantageously present. At the same time, device(s) for passing blood or blood/water mixtures or blood/buffer mixtures through the micro-channel or microcavity coated with lysis/bead/reagent are present.
Further, for the PCR to be performed in the cartridge according to at least one embodiment of the invention during use specifically for DNA analysis, device(s) for generation of a magnetic field for immobilization of the DNA/magnetic bead complex in a PCR cavity are present. For this purpose, the PCR cavity must be capable of being suitably sealed and device(s) for thermocycling must be present.
Finally, in the cartridge according to at least one embodiment of the invention, it is essential that device(s) for storage of used sample material and used reagents be present, which constitute waste reservoirs. At the same time, the device(s) must be suitable for the germproof, cell-free and particle-free venting of at least one waste reservoir. Finally, for the reading of the cartridge in a reader device, which is not an object of at least one embodiment of the invention, device(s) for the immobilization of the cartridge must be present.
Further details and advantages of embodiments of the invention follow from the following descriptions of the diagrams of practical examples on the basis of the drawings in combination with the patent claims. In diagrammatic form, respectively:
In the figures, the same or similarly operating components have the same reference symbols. In particular,
In the top view according to
Also visible in
As mentioned, the cartridge 100 has in particular an input port 102 for a whole blood sample. In addition, at least one device for the introduction of water is present. An inlet port for connection to an external water source can be present, or the feed port can be connected to an integrated water reservoir.
In the normal case, the microchannels or microcavities 101 to 131 are filled with dry buffer substances which ensure a defined ionic strength after the introduction of water. For blood analysis, at least one device for mixing of whole blood samples and water or the buffer solution and/or at least one device for passing a flow of blood or blood-water or blood buffer mixture through a micro-channel coated with a lysis bead reagent or the microcavity are present.
In the channel system, wide regions 106, 107, 108 and 109 are provided as reservoirs to accommodate waste. Apart from this, a region with channels 131 or 131′ to accommodate different ELISA reagents is present.
In each of
Specifically in the presentation according to
The correct implementation of the PCR with valve-controlled thermocycling within a cartridge is described in detail in the applicant's parallel applications DE 10 2004 050576.4 and DE 10 2004 050510.1 with the same application priority, to which in the present connection reference is expressly made (“Incorporation by Reference”). In particular, the use of magnetic beads for DNA binding and concentration of the magnetic beads with the DNA in the PCR chamber 120 by way of controllable magnetic fields is described therein, concerning which no more detailed description will be given here.
In each of
The evaluation is now illustrated on the basis of eleven concrete component process steps a) to m), after the cartridge has been inserted into an evaluation device with at least one device for accommodating the cartridge, and the evaluation device with the cartridge immobilized therein has been activated. In detail, with reference to
Thereby the analytical process is concluded. In particular in the case of electrochemical detection, the signals arising can be read electrically and evaluated using a processor in accordance with a preset program.
The cartridge described in detail with channels and cavities in
It is also possible to apply certain special fittings, for example as sealing materials and/or venting materials onto the open card base 101 before the closing and finishing of the cartridge on the cover side.
The specific measurement method is illustrated on the basis of
In conclusion, specifically for DNA analysis, the integrated operating method for the cartridge described in detail above is once again summarized as a combination or in the sequence of the individual component steps:
In the electrochemical measurements, firstly the rinsing of the detection chamber with an antibody solution bearing an enzyme label (ELISA reagent 1) takes place. Then the rinsing of the detection chamber with enzyme substrate (ELISA reagent 2) takes place. The electrochemical measurements are performed in a manner in itself known at predefinable, different temperatures and variable flow rates of the enzyme-substrate solution.
For the protein analysis, corresponding procedures are used, but in this case the PCR is not used.
Example embodiments being thus described, it will be obvious that the same may be varied in many ways. Such variations are not to be regarded as a departure from the spirit and scope of the present invention, and all such modifications as would be obvious to one skilled in the art are intended to be included within the scope of the following claims.
Number | Date | Country | Kind |
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10 2004 050 576.4 | Oct 2004 | DE | national |
This application is the national phase under 35 U.S.C. § 371 of PCT International Application No. PCT/EP2005/055303 which has an International filing date of Oct. 17, 2005, which designated the United States of America and which claims priority on German Patent Application number 10 2004 050 576.4 filed Oct. 15, 2004, the entire contents of which are hereby incorporated herein by reference.
Filing Document | Filing Date | Country | Kind | 371c Date |
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PCT/EP2005/055303 | 10/17/2005 | WO | 00 | 11/6/2007 |