Arrays for identifying agents which mimic or inhibit the activity of interferons

Abstract

Methods and model systems for identifying and characterizing new therapeutic agents, particularly proteins, which mimic or inhibit the activity of all interferons, Type I interferons, IFN-α, IFN-β, or IFN-γ. The method comprises administering an interferon selected from the group consisting of IFN-α, IFN β, IFN-τ, IFN-ω, IFN-γ, and combinations thereof to cultured cells, administering the candidate agent to a duplicate culture of cells; and measuring the effect of the candidate agent and the interferon on the transcription or translation of one or, preferably, a plurality of the interferon stimulated genes or the interferon repressed genes (hereinafter referred to as “ISG's” and “IRGs”, respectively). The model system is an array with gene probes that hybridize with from about 100 to about 5000 ISG and IRG transcripts.

Description

BACKGROUND OF THE INVENTION

Interferons (IFNS) are a family of related cytokines that mediate a range of diverse functions including antiviral, antiproliferative, antitumor and immunomodulatory activities. The pleiotropic activities of IFNs are mediated primarily through the transcriptional regulation of many downstream effector genes. IFNs bind to their cognate receptors and initiate a signaling cascade, involving the JAK-family of tyrosine kinases and STAT-family of transcription factors, that leads to the transcriptional induction of a number of IFN-stimulated genes (ISGs). IFN actions are largely mediated by the proteins encoded by ISGs, the best studied of which include the dsRNA-activated protein kinase (PKR), the 2′-5′ oligoadenylate (2-5A) synthetases and 2-5A-dependent ribonuclease (RNaseL), and the Mx proteins. The other well-characterized category of ISGs include the STAT and IRF families of transcription factors which are involved in the regulation of both ISG and IFN gene expression. However, the biological functions for many ISGs, including 6-16, 9-27 and the ISG-54 gene family, remain unclear despite, in some cases, extensive investigation of the 5′ regulatory regions of those genes.

ISGs exhibit unique patterns of transcriptional inducibility by different types of IFNs. Type I IFNs, representing the IFN-alpha (α), -beta (β), -omega (ω), and -tau (τ) genes, are grouped together since they bind to common Type I IFN receptor, while IFN-gamma (γ) is designated as Type II IFN since it is the unique ligand for the distinct Type II IFN receptor. In general, engagement of the Type I IFN receptor results in activation of the multimeric transcription factor, ISGF3, and leads to the transcriptional initiation of gene promoters containing IFN-Stimulated Response Elements (ISRE). Type II IFN receptor stimulation typically activates STAT1 homodimers which can regulate transcription from gene promoters containing IFN-γ Activated Sites (GAS). In accordance with this model, the differential inducibility of certain ISGs by Type I, Type II IFN, or by both, can be attributed to the presence of canonical ISRE or GAS elements.

Despite their common utilization of the same receptor complex, distinct Type I IFN proteins can mediate different biological responses. Numerous studies, using recombinant or purified natural, IFN-α or IFN-β proteins, have shown that individual Type I IFNs can be distinguished by their unique profiles of specific biological activities including antiviral and antiproliferative finctions, natural killer cell stimulation, and receptor binding affinities. While the molecular mechanisms underlying these differences are not yet known, a likely possibility involves the differential expression of ISGs by the various Type I IFNs. The best documented example of this concept involves betaRI (βRI), a chemokine gene whose expression is preferentially inducible by IFN-β but not by IFN-γ nor several IFN-α subtypes.

Considerable efforts have been devoted to exploit the therapeutic potential of IFNs. Currently both IFN-α and IFN-β are used to treat patients with serious diseases. Presently, IFN-α is used in the treatment of chronic myelogenous leukemia (CML), hairy cell leukemia, renal cell carcinoma, melanoma, hepatitis C virus infections, Kaposi sarcoma and hepatitis B infections. IFN-β is used for the treatment of multiple sclerosis. Unfortunately, patients who have been treated with the currently available forms of IFN-α and IFN-β, which include purified naturally occurring IFNs and recombinant IFNs, have experienced serious side-effect including including fever, malaise, myalgia, and depression.

Accordingly, it is desirable to have new methods and tools for identifying new therapeutic agents (hereinafter referred to as “IFN mimics”) which upregulate the ISGs that cause desirable effects in patients but which do not upregulate the ISGs that cause the detrimental side-effects associated with treating patients with IFNs. It is also desirable to have methods and tools which can be used to identify agents that selectively inhibit upregulation of the ISGs that cause the detrimental side-effects which result from treatment with IFNs, particularly IFN-α and IFN-β. It is also desirable to have a method for establishing patient sensitivity to interferon before beginning treatment protocols. It is also desirable to have methods and tools for monitoring the efficacy of treatment of patients with the currently used interferons and with any new interferon-like agents which are being developed. It is also desirable to have new treatment protocols which can make interferon therapy for cancer more effective. It is also desirable to have new methods and tools for identifying the biochemical pathways by which IFNs mediate their therapeutic effects.

SUMMARY OF THE INVENTION

The present invention provides novel methods and model systems for identifying and characterizing new therapeutic agents, particularly proteins, which mimic the activity of all interferons, Type I interferons, IFN-α, IFN β, IFN-τ, IFN-ω, and IFN-γ,. The method comprises administering an interferon selected from the group consisting of IFN-α, IFN β, IFN-τ, IFN-ω, IFN-γ, and combinations thereof to cultured cells, administering the candidate agent to a duplicate culture of cells; and measuring the effect of the candidate agent and the interferon on the transcription or translation of one or, preferably, a plurality of the interferon stimulated genes or the interferon repressed genes (hereinafter referred to as “ISG's” and “IRGs”, respectively). The model system is an array with gene probes that hybridize with from about 100 to about 5000 ISG and IRG transcripts.

In another aspect the present invention provides new methods for identifying and characterizing new therapeutic agents which block the activity of all interferons, Type I interferons, select Type I interferons, or IFN-γ. The method comprises administering an interferon selected from the group consisting of IFN-α, IFN β, IFN-τ, IFN-ω, IFN-γ, and combinations thereof to cultured cells, administering the interferon and the candidate agent to a duplicate cell culture; and assaying for changes in the levels of transcription of one or, preferably, a plurality of ISGs and IRGs, particularly those new ISGs and IRGs which are listed in Table 2 and Table 3, respectively.

In another aspect the present invention provides new methods for identifying and characterizing new agents which inhibit the transcription or translation of a new ISG that has been uncovered by the present study. The method comprises administering the interferon which has been shown to stimulate transcription of the new ISG to a set of cultured cells, administering the interferon and the candidate inhibitor to a duplicate set of cultured cells; and measuring the levels of mRNA or the levels of protein or factor encoded by the ISG gene in the two sets of cultured cells. This method is especially useful for identifying inhibitors for those ISGs whose transcription is increased by 2-fold or greater by treatment with the interferon.

In another aspect, the present invention provides a method of determining the sensitivity of a patient to prospective interferon therapy. The method comprises exposing cell samples obtained from a patient who is a candidate for interferon therapy to the interferon and measuring the levels of one or, preferably, a plurality of the ISG and IRG transcripts that are produced in response to the exposure. An increase in the levels of ISG transcripts and a decrease in the level of IRG transcripts in the interferon treated cells relative to the levels found in untreated control cells indicates that the patient is responsive to treatment with the interferon. A finding of no or little difference in the levels of ISGs and IRGs transcripts in the interferon-treated cells and control cells indicates that the patient is not responsive to treatment with the interferon.

In another aspect the present invention provides a method for monitoring the efficacy of interferon therapy in a patient. The method comprises measuring levels of transcripts of one or, preferably, a plurality of ISGs which are known to be stimulated by the interferon in a first cell sample obtained from the patient prior to administration of the interferon and in a second cell sample obtained from the patient subsequent to administration of the interferon. An increase in levels of the ISG transcript in the sample obtained from the patient subsequent to treatment relative to the sample obtained from the patient prior to treatment indicates that the patient is responsive to treatment with the interferon at the dosages administered.

In another aspect the present invention provides a method for monitoring the expression of genes which are specifically regulated by INF-β and therefore will determine the efficacy of INF-β therapy.

In another aspect the present invention provides a method for diagnosing the presence of viral infection in a patient. The method comprises assaying for elevated levels of transcripts of one or, preferably, a set of ISGs in cells which have been obtained from the patient relative to levels found in healthy subjects.

In another aspect the present invention relates to a method of identifying new ISGs and IRGs, particularly the ISGs and IRGs whose expression is regulated by IFN-β. The method comprises administering interferon to cultured cells for a period of time, such as for example 2 hours, 4 hours, 6 hours or 8 hours, measuring the levels of gene transcripts from untreated control cells and in cells treated with the interferon using arrays which comprise probes that are known to hybridize with transcripts of known ISGs and IRGs and with transcripts of genes whose products are not known to be ISGs or IRGs; and comparing the levels of transcripts for each gene in the control and interferon-treated cell cultures to provide a set of genes that are stimulated by treatment with interferon and a set of genes that are repressed by treatment with the interferon.

DETAILED DESCRIPTION OF THE INVENTION

The mRNA profiles from IFN-α, -β or -γ treatments of the human fibrosarcoma cell line, HT1080, were determined using oligonucleotide arrays with probe sets corresponding to more than 6800 human genes. Among these were transcripts for 48 known IFN-stimulated genes, the expression of which were consistent with previous studies in which the particular ISG was characterized as responsive to either Type I (α, β) or Type II (γ) IFNs, or both. Novel IFN stimulated genes were identified which were diverse in their known biological functions and included genes implicated in regulating apoptosis (RAP46/Bag-I and phospholipid scramblase), stress-activated protein kinase pathways (mixed lineage kinase-2), and growth factor signaling (vascular endothelial growth factor-related protein). Furthermore, gene transcripts were also identified whose expression was reduced by IFNs including COX17, histone H4, and TRAF6. These results demonstrate the usefulness of arrays comprising gene probes in monitoring the effect of IFNs on mammalian gene expression.

In accordance with these findings, new model systems useful for identifying new therapeutic agents and for identifying the biochemical pathways by which IFNs mediate their therapeutic effects are provided.

In one aspect the model system is a customized array which comprises gene probes that hybridize with from about 100 to about 5000 ISG and IRG transcripts. As used herein the term “array” refers to an arrangement of the gene probes on a substrate or support system. Preferably, the gene probes are arranged in a particular order and attached to the substrate or support system. As used herein the term “ISG” refers to any mammalian gene whose expression is increased at least 1.2 fold in cells treated with an interferon. (See Table 4 or the data set displayed at www. lerner.ccf.org/ri/labs/williams.html for a list of such genes.) As used herein the term “IRG” refers to any mammalian gene whose expression is decreased at least 1.2 fold in cells treated with an interferon. (See Table 4 or the data set displayed at the above-described website for a list of such genes.) As used herein the term “interferon” refers to a naturally-occurring interferon, a recombinant interferon which is at least 50% homologous to a naturally occurring interferon, interferon mixtures, and chemically-modified interferons, such as a polyethylene glycol (PEG)-interferon. Naturally-occurring interferons include all subtypes of IFN α, IFN-β, and IFN-γ. Preferably, the array comprises probes to fewer than 100 genes which are not ISGs or IRGs.

Examples of the types of molecules which may be used as a probe are cDNA molecules, oligonucleotides which contain at least 10 nucleotides, preferably from about 10 to about 30 nucleotides, and other gene probes which comprise nucleobases including synthetic gene probes such as, for example, peptide nucleic acids (PNAs). Preferably, the probes are attached to a solid support such as for example a glass substrate. Among the probes are molecules which hybridize under stringent conditions with transcripts of the newly-discovered ISGs shown in Table 2, i.e. the ISGs that are not preceded by a + sign. Preferably, the array comprises probes which hybridize a plurality of the ISGs shown in Table 2 and the IRGs shown in Table 3.

Hybridization conditions are based on the melting temperature (T m ) the nucleic acid binding complex or probe, as described in Berger and Kimmel (1987) Guide to Molecular Cloning Techniques, Methods in Enzymology, vol 152, Academic Press. The term “stringent conditions, as used herein, is the “stringency” which occurs within a range from about Tm-5 (5° below the melting temperature of the probe) to about 20° C. below Tm. As used herein “highly stringent” conditions employ at least 0.2×SSC buffer and at least 65° C. As recognized in the art, stringency conditions can be attained by varying a number of factors such as the length and nature, i.e., DNA or RNA, of the probe; the length and nature of the target sequence, the concentration of the salts and other components, such as formamide, dextran sulfate, and polyethylene glycol, of the hybridization solution. All of these factors may be varied to generate conditions of stringency which are equivalent to the conditions listed above.

Alternatively, the customized array comprises probes that hybridize with transcripts of ISGs and IRGs responsive to select interferons or to transcripts of ISGs and IRGs that are highly responsive to one or more interferons. In one embodiment the-array comprises probes to ISGs and IRGs responsive to Type I interferons, including all IFN alpha, IFN beta, IFN-omega, and IFN-tau and lacking probes that hybridize with Type II interferons, including IFN-gamma. In another-array comprises probes that hybridize with transcripts of ISGs and IRGs responsive to Type II interferons, and lacking probes that hybridize with Type I interferons. In another embodiment the array comprises gene probes that hybridize with genes whose expression is decreased or increased at least 3 fold by treatment with a Type I interferon. Preferably, the gene probes on such array hybidize to fewer than 100 different transcripts of genes whose expression is not increased at least 3 fold by treatment with a Type I interferon. In another embodiment the array comprises gene probes that hybridize with genes whose expression is decreased or increased at least 3 fold by treatment with a Type II interferon. Preferably, the gene probes on such array hybidize to fewer than 100 different transcripts of genes whose expression is not increased at least 3 fold by treatment with a Type II interferon.

Methods of Identifying New Therapeutic Agents

The present invention provides novel methods for identifying and characterizing new therapeutic agents, particularly proteins, which mimic the activity of all interferons, Type I interferons, IFN-γ, or select Type I interferons, such as, for example, IFN-β. The method comprises administering an interferon selected from the group consisting of IFN-α, IFN β, IFN-γ, and combinations thereof to a sample or samples of cells, administering the candidate agent to a duplicate sample of cells; and measuring the effect of the candidate agent and the interferon on the transcription or translation of one or, preferably, a plurality of ISGs and IRGs including the new ISGs that are not preceded by a + sign in Table 2. More preferably, the effect of the interferon is measured using a mini-array as described above or an array that comprises gene probes to all of the ISGs and IRGs shown in the attached data set. Preferably, separate cultures of cells are exposed to different dosages of the candidate agent.

Any cell line which is capable of being maintained in culture may be used in the method. Preferably, the cell line is a human cell line, such as, for example, a human fibrosarcoma cell line, Daudi cells, HeLa cells, and human primary cells including peripheral blood mononuclear cells, epithelial cells, endothelial cells, neural cells, muscle cells, or fibroblast cells. Nearly identical amounts of the interferon and the candidate agent are added to the culture medium of separate representative cultures of the cells. The cells are then incubated in the medium for a sufficient amount of time for transcription of the ISGs to occur or for turnover of the basal amounts of mRNA encoded by the IRGs. Preferably the cells are incubated in the medium for about 0.5 hours to about 24 hours, more preferably for from about 1 to about 8 hours. Control cultures are incubated in medium lacking the interferon and the candidate agent.

Alternatively, cells from individuals that have been treated with the interferon or with the agent are used. For example peripheral blood mononuclear cells from such individuals, as well as cells from untreated individuals are used. Preferably, RNA is extracted from such cells, converted to cRNA and used to probe arrays and mini-arrays, as described above.

The effect of the candidate agent on transcription is determined by measuring the relative amounts of the ISG transcripts that are present in the interferon treated cultures and the candidate agent-treated cultures as compared to the control cultures. Preferably, the relative amounts of IRG transcripts that are also present in the control culture, interferon-treated culture, and candidate agent-treated culture are also measured. Alternatively, the relative amounts of transcripts for a preselected subset of ISGs, or a preselected subset of IRGs or a single ISG such as for example, 2-5-A-synthetases, hypoxia inducible factor −1, scramblase, fas, BAK, PKR, RING4(TAP1), LMP7, MHC1, or a single IRG such as for example, bcr, PKD1, and COX17 are measured in the three cultures. The methods are especially useful for identifying therapeutic agents that are more potent than the known interferons and for identifyng therapeutic agents that do not have the same deleterious effects as the interferon which is used in the assay. The method is also useful for identifying IFN mimics that can be used in patients that fail IFN therapy due to anti-IFN antibody production in such patients.

Suitable methods for measuring the relative amounts of the transcripts are Northern blots, RT-PCR, or real-time RT-PCR, or RNase protection assays. For ease in measuring the transcripts for a plurality of the ISGs that are induced by the interferon or for a plurality of the IRGs that are repressed by the interferon, it is preferred that arrays and the mini-arrays as described above be used.

Optionally, the relative amounts of gene products that are produced in response to treatment with the interferon and the candidate therapeutic agent are also measured in the three cultures. In those cases where the gene product is a protein, the method used for assaying production of the gene products include, by way of example, western blots probed with specific antibody to the protein encoded by the ISG or IRG.

In another aspect the present invention provides new methods for identifying and characterizing new therapeutic agents which block the activity of all interferons, Type I interferons, IFN-γ, or select Type I interferons, such as, for example, IFN-β. The method comprises administering an interferon selected from the group consisting of IFN-α, IFN β, IFN-γ, and combinations thereof to a sample or samples of cultured cells, administering the interferon and the candidate inhibitor to a duplicate sample of cells; assaying for differences between the levels of transcription of the ISGs and IRGs in the two samples of cells. The differences are determined by measuring the relative levels of ISG transcripts and IRG transcripts in the cells treated with interferon and no inhibitor and in the cells that are treated with interferon plus the candidate inhibitor. Preferably, the levels of the ISG and IRG transcripts are also measured in untreated control cultures which are incubated in medium lacking both the interferon and the candidate inhibitor. Preferably, the levels of the transcripts of the genes listed in Table 2 and Table 3 are assayed.

Alternatively, cells from individuals that have been treated with the interferon or with the interferon plus the candidate inhibitor are used. For example peripheral blood mononuclear cells from such individuals, as well as cells from untreated individuals are used. RNA is extracted from such cells, converted to cRNA and used in conjunction with an array or mini-array as described above.

This method is especially useful for identifying potential therapeutic agents which block or avoid the unwanted, harmful side-effects of current IFN therapy. The agents which inhibit IFN function, i.e., the IFN antagonists, are useful for treating conditions such as AIDS, SLE, and rheumatoid arthritis, in which IFNs contribute to the disease.

In another aspect the present invention provides new methods for identifying and characterizing new agents which inhibit the transcription or translation of one of the new interferon-regulated genes that have been uncovered by the present study. The method comprises administering the interferon which has been shown to stimulate transcription of a particular gene to a cell culture, administering the interferon and the candidate inhibitor to a duplicate cell culture; and measuring the levels of mRNA or the levels of protein encoded by the gene in the two cell cultures. This method is especially useful for identifying inhibitors for those genes whose transcription is increased by 2-fold or greater by treatment with the interferon.

Method for Determining the Interferon Sensitivity of a Subject

In another aspect, the present invention provides a method of determining the sensitivity of a patient to prospective interferon therapy. The patient may be a veterinary patient or a human patient. The method comprises exposing cell samples obtained from a patient who is a candidate for interferon therapy to the interferon and measuring the levels of one or, preferably, a plurality of the ISG and IRG transcripts that are produced in response to the exposure. Suitable cells include, for example, nucleated blood cells, leukemia cells, tumor cells, liver cells obtained by biopsy. An increase in the levels of ISG transcripts and a decrease in the level of IRG transcripts in the interferon treated cells relative to the levels found in untreated control cells indicates that the patient is responsive to treatment with the interferon. A finding of little to no difference, for example a difference of less than 5%, in the levels of ISGs and IRGs transcripts in the interferon-treated cells and control cells indicates that the patient is not responsive to treatment with the interferon and that treatment with the interferon is not likely to produce the desired therapeutic effect.

Methods of Monitoring the Efficacy of Treatment with Interferon.

In another aspect the present invention provides a method for monitoring the efficacy of interferon therapy in a patient. In one embodiment, the method is used to identify non-responders, i.e., patients who are not expected to be responsive to treatment with a specific interferon or interferon mimic, or to determine minimum dosages which are expected to induce a beneficial therapeutic response in the patient, or to determine optimum dosages of the IFN or IFN mimic. The method comprises obtaining a first sample from the patient, administering the interferon or interferon mimic to the patient, obtaining a second sample from the patient, and measuring levels of a transcript for one or more genes that are down-regulated or upregulated by the interferon. The samples may be blood samples or tissue samples obtained by biopsy. Suitable cells include, for example, nucleated blood cells, leukemia cells, tumor cells, liver cells obtained by biopsy.

Preferably, the levels of one or more of the ISGs identified in Table II as not being known (i.e., the ISGs in Table 2 which are not preceded by a + sign) or one or more of the IRGs in Table 3 are measured. For example, the method may comprise isolating PBMCs from the patient before and after treatment with the IFN, isolating RNA from the PBMCs and performing RT-PCR or Northern blots on isolated RNA to determine if the transcripts of one or more of the IRGs in Table 3 have been downregulated. Alternatively, protein may be extracted from the PBMCs and then assayed by western blots using antibody to one or more of the proteins encoded by the IRGs in Table 3. More preferably the pre-treatment and post-treatment levels of the transcripts of all the ISGs in Table 2 and all the IRGs in Table 3 are determined.

In one preferred embodiment the method comprises administering IFN-β or a candidate INF-β mimic to the patient and measuring the levels of the phospholipid scramblase gene transcript in cells from the two samples, i.e., in cells from the sample obtained prior to administration of the interferon and after administration of the interferon. The levels of phospholipid scramblase gene transcript may be measured in peripheral blood mononuclear cells (PBMCs). A finding that treatment with INF-β or the IFN-β mimic has not elevated the levels of phospholipid scramblase transcript in the sample obtained from the patient as compared to the levels of phospholipid scramblase transcript in the PBMCs obtained from the patient before treatment, i.e., a finding that treatment with INF-β did not upregulate the phospholipid scramblase gene in PBMCs from the patient, indicates that the treatment with the INF-β or IFN β mimic is not likely to produce the desired therapeutic effect. Such method is useful for determining whether treatment with INF-β will decrease the duration and frequency of relapse in a patient with multiple sclerosis. This method is also useful for determining the proper dosing schedule or concentration of INF-β or INF-β mimic that must be used to treat the patient or the modifications to IFN-βw which must be made in order for treatment with IFN-α to have a more positive effect on suppressing disease in the patient. The method is also useful to determine optimum dosages of INF-β or an INF-β mimic.

In another preferred embodiment the method comprises administering IFN-α or IFN-γ to a patient with chronic myelogenous leukemia (CML) and measuring the levels of bcr/abl gene transcript in the leukemia cells from these patients both before and after administration of the IFN-α or IFN-γ to the patient. IFN-α and IFN-γ cause decreases in bcr expression. Because the bcr/abl oncogene which causes CML is also driven by the bcr promoter, IFN-α or IFN-γ treatment is expected to lead to decreases in bcr/abl mRNA levels, thus, leading to a therapeutic benefit for CML patients. Also ex vivo treatments of bone marrow or peripheral stem cell autologous transplants can be treated with IFN-α or IFN-γ as a method for purging the leukemia cells from the transplant.

Method of Diagnosing a Viral Infection in a Patient

In another aspect, the present invention provides a method for diagnosing a viral infection. The method comprises obtaining a cell sample from the patient, and measuring levels of a transcript for a gene which is down-regulated or upregulated by a Type I interferon in the cell sample. Preferably, levels of such transcripts are compared to the levels that are present in healthy subjects, i.e., persons who do not have a viral infection. Preferably, levels of the genes which are listed in Table 2 and Table 3 are measured.

Suitable methods for measuring the relative amounts of the ISG and IRG transcripts are Northern blots, RT-PCR, or real-time RT-PCR, or RNase protection assays. For ease in measuring the transcripts for all of the ISGs that are induced by the Type I interferon or interferons and for all of the IRGs that are repressed by the Type I interferon or interferons, it is preferred that arrays and the mini-arrays as described above be used.

Methods for Identifying Antiviral Proteins

Such methods are based on knowledge of which genes are induced or repressed by IFNs. In one aspect, a human cell line is transfected with a cDNA of an ISG or IRG, preferably a newly-identified ISG or IRG and grown under conditions that permit expression of the ISG or IRG The cells are then challenged with a virus. If the ISG encodes an antiviral protein, virus replication will be inhibited in cells transfected with the ISG cDNA.

Alternatively, the ISG in a culture of human cells is suppressed by transfecting the cells with antisense cDNA, or antisense oligonucleotide, or PNA, or a dominant negative mutant ISG. Cells in which the ISG expression is inhibited or suppressed are expected to have a defect in the biological action of IFNs, such as for instance the antiviral activity of IFN.

Method of Identifying New ISGs and IRGs.

In another aspect the present invention relates to a method of identifying new ISGs and IRGs. The method comprises administering IFN-α and IFN-β, and IFN-γ to separate sets of cultured cells for a period of time, such as for example 2 hours, 4 hours, 6 hours or 8 hours, assaying the transcripts present in untreated control cells and in the IFN-treated sets of cultured cells using arrays comprising probes to genes that are known to be induced or repressed by treatment with one or more interferons and to genes that are not known to be induced or repressed by treatment with one or more interferons. The results of the assay provide a set of genes which are stimulated by IFN-α and IFN-β, IFN-γ or combinations thereof and a set of genes that are repressed by treatment with IFN-α, INF-β , IFN-γ or combinations thereof. Such method is useful for identifying genes that are upregulated or down regulated by all Type I and Type II interferons, genes that are preferentially upregulated or downregulated by a subset of IFNs, e.g. Type I interferons as opposed to Type II interferons, and genes that are exclusively upregulated or down regulated by one interferon, such as for example, IFN-α or one subtype of IFN-α, INF-β, or IFN-γ.

The following examples are for purposes of illustration only and are not intended to limit the scope of the claims which are appended hereto.

EXAMPLE 1

To identify novel ISGs and obtain a comprehensive profile of differential ISG expression by distinct IFNs, oligonucleotide arrays containing probe sets for an 6800 human genes were used to assay for changes in mRNA expression following stimulation of the human fibrosarcoma cell line, HT1080, with either IFNα, -β or γ. Monitoring of gene expression by this method is based on hybridization of labeled RNA populations to high-density arrays of oligonucleotides, synthesized on a glass substrate by a combination of photolithography and conventional oligonucleotide chemistry as described in Fry, A. M., S. J. Schultz, J. Bartek, E. A. Nigg (1995) JBC 270,12899-12905. Several hundred genes were determined to be IFN-regulated including many of which represented novel ISGs. Significantly, the identification of novel ISGs with known biological functions provides new and informative insights into the mechanisms of IFN action.

Materials and Methods

Cell Culture and RNA Isolation. HT1080 cells were cultured using DMEM supplemented with fetal bovine serum (10%) and antibiotics. Cells (10 7 ) were plated on 15 cm tissue culture plates and cultured overnight before being treated with 1000 IU/ml of each IFN, IFN-α (IFNalpha2a, Roche, specific activity 2.7×10 8 IU/mg), IFN-β (IFN-beta, Berlex, specific activity 2×10 8 IU/mg), or IFN-γ (IFN-gamma, Gibco-BRL, specific activity 10 7 IU/mg). After treatment with the IFNs for 6 hours, total RNA was isolated (Trizol, Gibco-BRL).

Preparation of cRNA. The methods for preparation of cRNA and subsequent steps leading to hybridization and scanning of the Hu6800 GeneChip Arrays were provided by the manufacturer (Affymetrix). Briefly, poly A+RNA was isolated from 100 μg total RNA of each sample with Oligotex (Qiagen) and converted into double-stranded cDNA using a cDNA synthesis kit (SuperScript Choice, Gibco-BRL) with a special oligo dT(24) primer containing a T7 RNA polymerase promoter site added 3′ of the poly T tract (Genset). After second-strand synthesis, labeled cRNA was generated from the cDNA sample by an in vitro transcription (IVT) reaction (T7 MegaScript System, Ambion) supplemented with biotin-11-CTP and biotin-16-TTP (Enzo Diagnostics). The labeled cRNA was purified using RNeasy spin columns (Qiagen).

Fifty μg of cRNA from each sample was used to prepare 1 ml of master hybridization mix which also contained a cocktail of 4 control cRNAs for bacterial genes, added in known concentrations (BioB, BioC, BioD and cre, at 1.5, 5, 25 and 100 pM, respectively; referred to as “staggered spikes”), to serve as tools for comparing hybridization efficiency between arrays. A biotinylated oligonucleotide, B2, was also added which hybridizes to unique features at the center and 4 comers of each chip to facilitate accurate orientation and mapping of the probe sets.

Microarray Hybridization and Scanning. Fifty μg of each cRNA sample was fragmented by mild alkaline treatment, at 94° C. for 35 min in fragmentation buffer (200 mM Tris-acetate, pH 8.1, 500 mM potassium acetate, 150 magnesium acetate). A final complete hybridization mix for each sample was prepared which contained the fragmented cRNA, 50 pM of a control biotinylated oligonucletide, B2 (Affymetrix), staggered control cRNA cocktail (final concentrations: 1.5 pM BioB, 5 pM BioC, 25 pM BioD and 100 pM cre), 0.1 mg/ml herring sperm DNA (Sigma), and 2×Affy buffer, in 1 ml total volume. Prior to hybridization, the cRNA samples were heated to 94° C. for 5 min, equilibrated to 40° C. for 5 min, and clarified by centrifugation (14,000 g) at room temperature for 5 min. Aliquots of each sample (200 μl) were hybridized to Hu6800 GeneChip arrays at 40° C. for 16 h, in a rotisserie oven set at 60 rpm. The Hu6800 GeneChip array represents a set of 4 individual chips, A-D, each containing unique probe sets to over 1700 genes, collectively representing more than 6800 human genes. Following hybridization, the arrays were washed with 6×SSPE and 0.5×SSPE according to manufacturer's protocol stained with strepavidin-phycoerythrin (Molecular Probes), washed again and read using a confocal microscope scanner with the 560mm longpass filter (Molecular Dynamics, Affymetrix).

Data Analysis. Data analysis were performed using GeneChip 3.0 software. Comparison files were created by scaling the 6 probe sets for 5′, M and 3′ of actin and GAPDH in all data sets to an arbitrary value, 50,000, and normalizing to all genes.

Results

To assess variability in array hybridization and cDNA synthesis efficiency between samples, two types of hybridization controls were examined. Hybridization efficiency between arrays was assessed by comparing the signal intensities for the 4 control bacterial gene cRNA “spikes”, BioB, BioC, BioD and cre, which had been added to the hybridization mixtures at known concentrations (1.5, 5, 25 and 100 pM, respectively). Among the 16 total arrays screened, BioB was usually detected as absent, while BioC, BioD and cre were detected as present in all data sets. This established that, under these hybridization conditions, the lower detection limit was in the range of 1.5 to 5 pM. Each array also contained distinct probe sets corresponding to the 5′, middle (M), and 3′ regions for both actin and GAPDH. The cumulative hybridization intensities for either of these gene transcripts were used to provide normalization between different RNA samples, as is commonly done in conventional mRNA detection methods. Furthermore, the efficiency of full-length cDNA synthesis for a given cRNA sample can be assessed by comparing the respective 3′ signal intensities to that of the upstream 5′ and middle regions.

Since each sample was hybridized to 4 separate DNA arrays, it was essential to determine the consistency among arrays by calculating the average intensities for all of the actin and GAPDH probe set among the data sets (See Table 1 below). Importantly, the average hybridization signals for each of the 6 different actin and GAPDH probe sets differed by less than 20% among the four samples. To compare the efficiency of cDNA synthesis between samples, the ratios for the 5′ and middle intensities relative to the 3′-intensities were calculated for actin and GAPDH. Among the 4 samples, the intensities for 5′-GAPDH signals were 81-86% of the 3′-GAPDH intensities, while M-GAPDH signals were 101-110% of the 3′-GAPDH values; the 5′- and M-actin intensities relative to that of the 3′-actin values, were 130-146% and 146-157%, respectively. The higher signal intensities for the M- and 5′-GAPDH regions as compared to the 3′-region are reflective of the intrinsic hybridization characteristics of these probes sets. Also, a high degree of similarity was observed in the overall patterns of 5′, middle, and 3′ intensities between samples. Specifically, the 5′-actin intensities were lower than M-actin, but higher than 3′-actin signals in all 4 samples; all M-GAPDH intensities were uniformly higher than those of the 3′-GAPDH regions which, in turn, were higher than M GAPDH signals. Taken together, these data indicate that a high level of both efficiency and consistency was achieved in the cDNA and cRNA synthesis for these 4 samples.

TABLE 1
Average intensity values for actin and GAPDH. The average
intensity values for the probe sets indicated were calculated
from the respective values obtained by hybridization of each
sample to the 4 arrays which comprise a Hu6800 GeneChip set.
	Sample	5′	M	3′
Actin
	1	5662(1.46)	6089(1.57)	3875(1)
	2	7195(1.30)	8073(1.46)	5532(1)
	3	7311(1.33)	8167(1.48)	5484(1)
	4	7860(1.49)	8254(1.56)	5281(1)
GAPDH
	1	6314(0.82)	8493(1.10)	7707(1)
	2	8107(0.86)	10230(1.09)	9417(1)
	3	6949(0.81)	8635(1.01)	8542(1)
	4	8101(0.85)	10319(1.09)	9441(1)

We next determined which gene transcripts were detectable and their respective signal intensities. The total number of mRNAs detected as present among the 4 samples was similar: untreated, 2207; IFN-α, 2225; IFN-β, 2403; and IFN-γ 2320. The intensities for gene transcripts detected as present represented a range spanning 3 orders of magnitude, from approximately 20 to the highest recorded value of 18,524 for metallothionein. The majority of these mRNAs, approximately 85-90%, were detected with intensities of less than 1000. The genes associated with intensities greater than 1000 (˜300 genes) include many of the ribosomal genes and commonly known high-abundance genes such as tubulin, elongation factor 1-a and ubiquitin. It is interesting to note that among this set of highly abundant mRNAs, stimulation by any of the 3 IFNs did not cause dramatic changes in their expression levels, with any detectable changes being less than 2-fold. The singular exception was β2 microglobulin, a known ISG, with a basal expression level of 1111 that was increased 1.9-, 2.3- and 1.3-fold, respectively, by IFN-α, -βor -γ (Table 2).

To identify IFN-regulated genes, pairwise comparisons were generated between the data sets from each of the IFN-treated samples and the untreated HT1080 cell data set. Over 1000 genes were identified whose mRNA expression levels changed following IFN stimulation (See FIG. 4 and the data set posted at www.lerner.ccf.org/ri/labs/williams.html). The majority of these (>75%) represented genes for which the degree of change was less than 2-fold. The number of genes whose expression changed more than 10-, 4- or 2-fold was 10, 26 and 94 for IFN-α; 14, 56 and 268 for INF-β; and 4, 25 and 129 for IFN-γ, respectively.

To select the genes most likely to represent IFN-regulated genes which are strongly induced or repressed by IFNs, we empirically tested different criteria to make further selections from the list of over 1000 differentially expressed genes. By using known ISGs as “guideposts”, we determined reasonable but conservative delineations for fold change values. After applying a given criteria to yield a shortened list of genes, its effectiveness was assessed by the number of known ISGs remaining and in particular, how many remained near the bottom of the list. Three criteria were ultimately applied to generate a list of 128 genes (Table 2): 1) gene transcripts with at least 4-fold increased expression by any IFN type, 2) gene transcripts with at least 3-fold increase by any IFN type and detected as absent in untreated HT1080 cells, and 3) gene transcripts with at least 2-fold increase in response to all 3 types of IFNs. These genes were then ordered in 3 subgroups by first listing genes on the basis of highest fold change in response to IFN-α, followed by responses to INF-β and finally, IFN-γ. A useful aspect of the GeneChip 3.0 software involves the special identification of genes whose expression was called as absent from the untreated or baseline sample, but present in the IFN-treated sample. In these cases, the fold change is calculated by dividing the intensity value for the gene from the IFN treated data set, by an arbitrary value of 20 (which approximates the lower limit of detection) and thus, the calculated fold change most likely represents a underestimation of the true fold change. The genes falling into this category are identified in Table 2 with a “greater than” sign (>) preceding the fold change value.

Among the 128 genes in Table 2, at least 48 genes represent known ISGs as indicated in previous published studies while the remaining 80 represent novel IFN-regulated genes. The characteristic induction profiles for these genes allows for them to be categorized as 1) genes which are induced by all 3 types of IFNs, 2) genes inducible by IFN-α or IFN-β, 3) genes preferentially induced by IFN-β, and 4) genes preferentially induced by IFN-γ; 9-27, 2-5A synthetase, HIF-1 and IRF-1 represent examples for each of categories, respectively (FIG. 1, Table 2). There were no convincing examples of genes preferentially induced by IFN-α but not by IFN-β. While there are examples of genes listed in Table 2 with significant fold increases in response to IFN-α, but with 0 representing the fold increase by INF-β, the respective IFN-induced intensity values are in fact similar. As examples, the respective IFN-α- and INF-β treated intensities for alpha-1 type XVI collagen are 220 and 184, and for PML-I are 84 and 88, despite 0-fold increase by IFN-β displayed for both genes. When analyzing two data sets, the GeneChip software uses a decision matrix which includes other parameters in addition to the net change in intensity values, in order to decide whether a given gene is differentially expressed. Consequently, once a decision is made that there was no significant difference in expression, “0” is automatically entered as the fold change value for that gene regardless of the actual ratio between the two intensity values. Therefore in the overall analysis, it is important to consider actual intensity values in addition to the fold-change.

The results for specific known ISGs are as follows: 6-16 was absent in untreated cells and induced at least 20- and 21-fold by IFN-α or INF-β respectively, but not at all by IFN-γ. 9-27 was induced 23- and 22-fold by IFN-α or INF-β and 8-fold by IFN-γ (FIG. I and Table 2). The consistency between our data and previous studies regarding IFN-specific inducibility further extends to several other genes.

ISGs which are preferentially induced by IFN-α but not IFN-γ include the 2-5′ oligoadenylate synthetase family of genes, MxA and MxB genes, and the gene family comprising ISG54, ISG56, ISG58, and RIG-G. ISGs preferentially induced by IFN-γ include IRF-1, IP-30 and IITA; ISGs which are responsive to both IFN-α and IFN-γ include MHC Class I genes, STATI and GBP. The differential induction of 2-5A synthetase mRNA by IFN-α and IFN-γ was confirmed by Northern blot analysis prior to using the same RNA samples to prepare cRNA for this analysis. It is noteworthy that although the mRNA expression profiles for most of the above genes were established using a variety of different cell types including HeLa, Daudi and NB4 cells, their IFN-specific induction characteristics were similar in HT 1080 cells.

In the analysis of our data using known ISGs as guideposts, we determined that it was reasonable to attribute greater significance towards genes whose expression levels changed from absent in untreated cells to detectable in IFN-treated cells. The 3 criteria we applied to select the 128 IFN-regulated genes described in Table 2 represent conservative cutoffs. Known ISGs were also among the hundreds of genes which were originally detected as differentially expressed but excluded by our cutoff criteria and therefore, by inference, other genuine and novel ISGs were also likely represented. It is possible that the mRNA levels for many genuine ISGs simply do not change by more than 3-fold at the 6 h timepoint we used to prepare cRNA. These results demonstrate that the present method of using oligonucleotide arrays to identify ISGs is effective.

The results for specific unknown ISGs are as follows: The expression levels of scramblase were increased 8- and 10-fold by IFN-α and INF-β, respectively, while IFN-γ conferred a more modest 3-fold increase (Table 2). This enzyme has an important role in the apoptosis programmed by flipping phosphatidylserine from the inner to the outer leaf of the cell membrane. Exposed phosphatidylserine serves as a surface marker for recruited phagocytes to recognize and eliminate apoptotic bodies. Therefore, increased levels of phospholipid scramblase in response to IFN may serve as a mechanism which enables more efficient removal of virus-infected cells undergoing apoptosis. Two anti-apoptotic IFN-regulated genes were identified. Expression of RAP46, the human homologue for the mouse gene, BAG-1, was consistently induced about 3-fold by all IFNs. In addition, BcI-2 expression was modestly increased by IFN-α or IFN-β.

Our analysis has now identified several IFN-regulated serine/threonine kinase genes. For example, mixed lineage kinase 2 (MLK2) was inducible by all 3 IFNs. MLK2 has been characterized as a participant in the JNK/SAPK pathway, capable of activating SEK1 and MKK7. Thus, IFNs may sensitize JNK/SAPK signaling pathways by upregulating MLK2.

Previously, βRI. was the only known ISG which is selectively induced by IFN-β, but not IFN-α nor IFN-γ. Our data identifies over 20 potential candidate genes whose mRNA levels are upregulated by IFN-β but not by IFN-α. These include a gene encoding a clathrin-like protein, PKR, hypoxia-inducible factor (HIF-1), and the fos family member, Fra-1. Two other candidate IFN-β-specific genes are ISG54 and ISG58. Interestingly, the two other members of this gene family, ISG56 and RIG-G, both exhibit a consistently higher level of inducibility in response to INF-β as compare to IFN-α (Table 2). Other genes which also appear to be preferentially induced by INF-β over IFN-α include IFI16, STATI, and GBP-2. Although probe sets for βR1 are encoded on the Hu6800 set of chips, no basal nor inducible expression of βR1 was detectable among of our samples, possibly because βR1 mRNA levels usually peak later than the 6 h timepoint used in this study.

Unexpectedly, PKR was characterized by the oligo array data as inducible by INF-β, but not IFN-α. However, as evident from Table 2, the actual untreated and IFN-α-treated intensities for PKR are 42 and 83, respectively, a 2-fold increase. Previous studies involving Northern blot and nuclear run-on analyses determined that PKR gene transcription in Daudi cells reaches maximal levels 2 hours following IFN-α stimulation and that PKR mRNA levels are significantly elevated by 4 hours. These results suggest the intriguing possibilities that not only may PKR be preferentially induced by IFN-β, cellular background may also contribute distinct characteristics to the profile of PKR mRNA induction by distinct IFN subtypes. Furthermore, the concept of differential responsiveness by certain IFNs in a cell type-specific manner may also be generalized to other ISGS,

Stimulation by either IFN-α or IFN-γ resulted in similar results, approximately 100 genes with differences greater than 2-fold, and 25 genes with greater than 4-fold change. INF-β stimulation, on the other hand, resulted in more than double these amounts, 268 genes with greater than 2-fold increases, and 56 genes with greater than 4-fold change. Since the molar amounts of IFN-α and -β protein used in our experiments were similar and the respective intensity values for the majority of ISGs induced by both IFN-α and IFN-β were also generally similar, this suggests that IFN-β may regulate a wider range of ISGs, at least in fibrosarcoma cells. In addition, it also suggests that ISGs which are inducible by IFN-α or INF-β may be distinguished into 3 categories, ISGs which are similarly regulated by IFN-α/β, ISGs which are preferentially regulated by INF-β and ISGs which are differentially regulated by IFN-α and IFN-β but still inducible by both. We did not detect ISGs which are preferentially induced by IFN-α but not IFN-β.

Genes which were not previously known to be preferentially regulated by IFN-α include the IL-15α receptor and NF-IL6α. The AAD14 gene was upregulated 3 fold by IFN-γ and while it encodes for a protein of unknown function, mutant alleles of this gene having expanded CAG repeats are present in patients with spinocerebellar ataxia.

Finally, a group of genes exhibited decreased mRNA levels following IFN treatment. By applying 2 criteria, any genes with at least 3-fold decrease by any IFN and genes with at least 2-fold decrease by all 3 IFNs, 12 genes were identified as IFN-repressed genes (Table 3). These genes include the histone H4 gene and the COX 17 gene. Expression of the histone H4 gene is known to be cell cycle-regulated and is coupled to DNA replication and G1/S transition. The reduction of histone H4 mRNA levels by all 3 IFNs may represent one of the regulatory mechanisms required for IFN-induced growth arrest. COX17 has been best characterized in yeast as a specific transporter of copper ions to enzymes such as cytochrome oxidase and copper/zinc superoxide dismutase. Expression of the zinc transporter, ZnT-3, was also decreased by INF-β but it is not known whether ZnT-3 has any role in regulating superoxide dismutase enzymes. ZnT-3 and four other genes, clone 23748, clone 1D2, C1 and insulin-like growth factor 2 (IGF-2), all appear to be preferentially downregulated by IFN-β, but not IFN-α or IFN-γ. IGF-2 has previously been shown to be downregulated by IFN-γ and this was suggested as a possible mechanism involved in IFN-γ-mediated growth inhibition. Such genes may serve as better markers to monitor the effectiveness of IFN therapies.

Table 2. Genes Upregulated by IFNs. IFN-regulated genes identified by GeneChip analysis were divided into three subgroups, separated by a space. The first subgroup was organized in decreasing order on the basis of fold increase in response to IFN-α, while the second and third were similarly ordered by decreasing fold increase in response to IFN-β and IFN-γ, respectively. A plus sign in the “Known ISG” column indicates that previous studies had identified the given gene as being regulated by IFNs. An asterisk beside an intensity value indicates that the given-gene transcript was determined by the GeneChip software as absent from that particular sample. A “greater than” sign (>) beside a fold increase value for a given gene indicates that this likely represents an underestimation since expression of the gene was determined as absent in the untreated sample and consequently, the GeneChip software used 20 as an arbitrary divisor in order to calculate the fold change for the IFN-treated sample.

	TABLE 2
	IFN- alpha	IFN- beta	IFN- gamma
GenBank	Known	Gene	Untreated			Fold		Fold		Fold
Accession	ISG	Description	Intensity		Intensity	Increase	Intensity	Increase	Intensity	Increase
M24594	+	ISG-56K	16	*	588	>29.4	2492	>124.6	15	0
X02875	+	2-5A synthetase	18	*	584	>29.2	505	>25.2	24	0
		(1.8 kb RNA)
X57522	+	RING4	29	*	800	28	602	21	1407	49.2
J04164	+	9-27	62	*	1431	23.2	1349	21.9	504	8.2
M33882	+	MxA	19	*	426	>21.3	625	>31.3	25	0
M13755	+	IFN4nduced	148		3054	20.7	2409	16.3	268	1.8
		17/15-kDa
		protein
U22970	+	6-16	−12	*	405	>20.2	433	>21.7	−7	.0
U52513	+	RIG-G	19	*	358	>17.9	583	>29.2	63	>3.1
M62800		52-kD SS-A/Ro	−34	*	204	>10.2	131	>6.6	126	>6.3
		autoantigen
M87503	+	p48ISGF3γ	50	*	499	10.1	478	9.6	392	7.9
U72882	+	IFP35	55		460	8.4	395	7.2	258	4.7
Z14982	+	LMP7	47	*	389	8.3	342	7.3	535	11.4
AF008445		Phospholipid	72		594	8.2	723	10.0	268	2.9
		scramblase
X02874	+	2-5A synthetase	33	*	262	8	217	6.6	43	0
		(1.6 kb RNA)
L22342	+	IFN-induced	4	*	156	>7.8	199	>10.0	119	>6.0
		nuclear
		phosphoprotein
M30818	+	MxB	3	*	114	>5.7	254	>12.7	36	0
M97936	+	STAT1 (84	−31	*	111	>5.6	224	>11.2	40	>2.0
		kDa)
U43142		VEGF-C/VRP	37	*	198	5.3	150	0	264	7.1
M87434	+	2-5A synthetase	10	*	104	>5.2	181	>9.1	25	0
		(71 kDa)
Z36591		RAP46/Bag-1	−2	*	99	>5.0	134	>6.7	86	>4.3
X74262		RbAp48	24	*	119	5	175	7.3	100	4.2
D49824		Human HLA-B	79		395	5	527	6.7	360	4.6
		null allele
M63838	+	IFI 16	8	*	98	>4.9	254	>12.7	67	>3.3
M97935	+	STAT1 (91	52		258	4.9	446	8.5	155	3
		kDa)
D50919		KIAA0129	33		155	4.7	198	6	76	0
M92642		Alpha-1 type	43	*	179	4.2	153	0	190	4.4
		XVI collagen
M55542	+	GBP-2	12	*	82	>4.1	175	>8.7	147	>7.3
X14454	+	IRF-1	22	*	88	4	117	5.3	682	31.1
M79463	+	PML-2	70		280	4	279	4	250	3.6
X82200	+	Staf50 mRNA	46		177	3.9	274	6	55	0
X66401	+	LMP2	108		388	3.6	250	2.3	581	6.4
D28137		BST-2	22	*	86	3.9	100	4.5	32	1.4
X90846		Mixed lineage	17	*	71	>3.6	95	>4.8	95	>4.8
		kinase 2
X04602		Interleukin	21	*	76	3.6	65	3.1	65	3
		BSF-2
U59321		DEAD-box	−37	*	70	>3.5	32	>1.6	−32	0
		protein p72
U04285		Lysosomal acid	17	*	69	>3.5	81	>4.0	31	0
		lipase (LIPA)
M79462	+	PML-1	35	*	121	3.5	134	0	124	3.6
M24470		Glucose-6-P	18	*	68	>3.4	71	0	45	0
		dehydrogenase
U89606		Pyridoxal	28	*	89	3.2	168	6	93	0
		kinase
U83463		Scaffold protein	13	*	64	>3.2	64	0	37	>1.9
		Pbp1
J04080	+	Complement	11	*	62	>3.1	65	>3.3	103	>5.2
		component C1r
U32849		Hou	18	*	59	>3.0	92	>4.6	49	>2.4
M20022	+	MHC Class 1	151		445	3	536	3.6	912	6.1
X58536	+	MHC Class 1	120		337	2.8	363	3	276	2.3
D28915		Hepatitis C-	27	*	74	2.8	128	4.8	26	0
		associated p44
L40387		TRIP14	117	*	318	2.7	416	3.5	110	0
M22877		Somatic	93		253	2.7	333	3.6	163	1.7
		cytochrome c
U09825		Acid finger	76	*	200	2.6	214	2.8	153	2
		protein
X15949	+	IRF-2	5	*	50	>2.5	77	>3.9	42	0
U41515		DSSI	67		168	2.5	201	3	117	1.8
X83492	+	Fas/Apo-I	6	*	48	>2.4	51	0	52	>2.6
L14778		PPP3CA	7	*	47	>2.4	76	>3.8	26	>1.3
X61123		BTG1	80		192	2.4	158	2	183	2.3
J04611		Lupus p70 (Ku)	524		1250	2.4	1253	2.4	1025	2
		autoantigen
X75755		PR264	150		364	2.4	342	2.3	326	2.2
D89052		Proton-ATPase-	408		912	2.2	720	1.8	1005	2.5
		like protein
U84573		PLOD2	58		28	2.1	162	2.8	23	2.5
U10439	+	DsRNA	152		324	2.1	450	3	304	2
		adenosine
		deaminase
Z47087		Pol II	134		263	2	201	1.5	238	1.8
		elongation
		factor-like
		protein
M94556		Mitochondrial	309		542	1.8	619	2	581	1.9
		SSB
D32129	+	HLA class-I	252		449	1.8	461	1.8	518	2.1
		(HLA-A26)
		heavy chain
J00105	+	Beta-2	1019		1700	1.7	2150	2.1	1296	1.3
		microglobulin
L25081		GTPase (rhoC)	432		696	1.6	652	1.5	912	2.1
U20998		SRP9	105		157	1.5	277	2.6	137	1.3
X95648		eIF-2B alpha	90		138	1.5	167	1.9	196	2.2
		subunit
U07802		TisIId	10	*	28	>1.4	39	>2.0	30	>1.5
U49837		LIM protein	−16	*	26	>1.3	50	>2.5	24	>1.2
		MLP
X16707		Fra-1	18	*	44	0	214	>10.7	254	>12.7
M21388		Unproductively	−7		180	0	193	>9.7	251	>12.5
		rearranged IgM
D38293		Clathrin-like	28	*	27	0	246	8.9	15	0
		protein
Y09836		3′UTR of	11	*	−19	0	150	>7.5	35	0
		unknown
		protein
U22431		Hypoxia-	29	*	33	0	204	7.1	50	0
		inducible factor
		−1
M35663	+	Pkr	39	*	68	0	271	7	33	0
X89416		Protein	49		103	0	305	6.2	160	3.3
		phosphatase 5
U88047		DRX	−40	*	77	0	107	>5.4	106	0
Z50194		PO-rich protein	46		103	0	245	5.3	210	4.5
U41766		MDC9	25	*	30	0	135	5.3	19	0
U79291		Clone 23721	16	*	−2	0	97	>4.9	20	0
U58046		p167	21		17	0	100	4.7	14	0
D79999		KIAAo177	32	*	21	0	140	4.4	43	0
U41387		Gu protein	53		56	0	226	4.3	57	0
X63563		RNA	56		105	1.9	230	4.1	88	0
		polymerase
		II140 kDa
X70649		Clone 1042 of	49	*	81	0	199	4.1	50	0
		DEAD box
		family
D29640		KIAA0051	26		32	0	103	4	37	0
Z29064		AF-1p	23	*	54	2.4	88	3.9	42	1.8
D79986		K1AA0164	4	*	30	0	76	>3.8	19	0
U44378		DPC4	15	*	34	>1.7	77	>3.8	16	0
J03473		Poly (ADP-	61		130	0	224	3.7	146	2.4
		vibose)
		polymerase
D90070		PMA-	4	*	28	>1.4	69	>3.5	42	>2.1
		responsive
		gene (APR)
D63875		KIAA0155	14		13	0	70	>3.5	26	0
M85164		SAP-1	11	*	21	0	67	>3.4	32	>1.6
U34605	+	ISG-58K	8	*	15	0	66	>3.3	20	0
D14043		MGC-24	55		94	1.7	182	3.3	33	0
J04102		Ets-2	20	*	14	0	67	3.3	34	0
D16481		Mitochondrial	45	*	86	0	147	3.2	103	2.3
		3-ketoacyl-
		CoA
		thiolase		*
Z69915		Clone	23	*	28	0	73	3.2	28	0
		ICRFp507L187
		6
X98260		M-phase	−9	*	7	0	61	>3.1	−6	0
		phosphoprotein,
		mpp11
M14660	+	ISG-54K	−62	*	−5	>1.0	61	>3.1	−4	>1.0
M82882		Human cis-	2	*	21	0	63	>3.1	9	0
U05040		acting sequence
		FUSE binding	60	*	84	0	189	3.1	63	0
		protein
M28249		Collagen	31	*	28	0	97	3.1	22	0
		receptor alpha-
		2 subunit
X74039		uPA receptor	22	*	52	0	68	3.1	49	0
M83216		Caldesmon	3	*	9	0	62	>3.1	5	0
AB001106		Glia maturation	6	*	14	0	61	>3.0	21	0
		factor
U19252		Putative	11	*	24	0	59	>3.0	30	0
		transmembrane
		protein
M63896		TEF1	15	*	22	0	59	>3.0	9	0
X54326		Glutaminyl-	49	*	39	0	150	3	44	0
		tRNA
		synthetase
J03909	+	IP-30	4	*	44	>2.2	35	>1.8	239	>12.0
U82987		BcI-2 binding	−27	*	46	>2.3	8	0	102	>5.1
		component 3
		(bbc3)
M83667		NF-IL6- beta	24		30	0	59	2.5	108	4.5
M24283	+	ICAM-1	−8	*	−4	0	−15	0	86	>4.3
U63824		RTEF-1	40	*	87	2.2	64	0	162	4
M21533	+	MHC Class 1	239	*	437	1.8	517	2.2	938	3.9
X96752		L-3-	17	*	32	0	50	>2.5	77	>3.8
		hydroxyacyl-
		CoA
		dehydrogenase
U31628		IL1 5RA	36	*	87	0	111	0	135	3.8
X85237		Splicing factor	52	*	49	0	101	0	192	3.7
		SF3al20
X98172		MACH-1	23	*	53	2.3	65	2.8	74	3.2
X71874		MECL-1	184		312	1.7	292	1.6	563	3.1
X84213	+	BAK	57		78	0	82	0	190	3.3
U18009		Human 17q21	30	*	64	0	52	0	94	3.1
		clone LF 113
U65011		PRAME	37	*	72	0	67	0	111	3
L07633		IFN-γ-	250		478	1.9	411	1.6	714	2.9
		tinducible gene,
		I-5111

TABLE 3
Genes downregulated by IFNs.
	IFN- alpha	IFN- beta	IFN- gamma
GenBank	Gene	Untreated		Fold		Fold		Fold
Accession	Description	Intensity	Intensity	Increase	Intensity	Increase	Intensity	Increase
L77701	COX17	107	17	>5.3	60	0	28	3.8
D86971	KIAA0217	74	14	>3.7	63	0	54	1.4
U07000	BCR	77	24	3.2	30	0	21	3.7
M16707	Histone H4	62	8	>3.1	1	>3.1	−16	>3.1
U60062	FEZ1-T	60	22	2.8	30	0	18	>3.0
U62962	Int-6	237	121	2	473	(2)	158	1.5
Z78289	clone 1D2	182	101	0	24	7.6	151	0
X03562	Insulin-Like	129	92	0	0	>6.4	115	0
	Growth Factor 2
U79294	clone 23748	366	140	2.6	74	5	165	0
X78817	H. sapiens partial	206	145	0	46	4.5	175	0
	C1 mRNA
U76010	Zinc transporter	469	289	0	118	4	296	0
	ZnT-3
U62437	Nicotinic	78	−11	0	−28	>3.9	20	0
	acetylcholine
	receptor
U61232	Tubulin-folding	69	51	0	10	>3.5	51	0
	cofactor E
U30894	N-	71	39	0	16	>3.5	56	0
	sulphoglucosamine
	sulphohydrolase
U82311	Unknown protein	231	187	1.2	66	3.5	200	0
X17025	Homolog of IPP	109	55	0	147	0	8	>5.5
	isomerase
U78798	TRAF6	117	44	0	41	2.8	28	4.1
Z31695	Inositol	79	37	0	50	0	17	>3.9
	polyphosphate 5-
	phosphatase.
M15841	U2 RNA-	129	104	0	121	0	38	3.4
	associated B
	antigen
X97748	PTX3	90	63	0	107	0	26	3.5
L33243	Polycystic kidney	60	33	0	38	0	4	>3.0
	disease 1 protein

EXAMPLE 2

Murine ISGs and IRGs were identified from cultures of primary mouse embryo fibroblasts prepared from C57/B16 mice at 16 days of gestation. Cells were treated for 6 hours with 10,000 units per ml of IFN-αBBDB. Total/mRNA was isolated from treated and untreated control cells as described above in Example 1. The levels of transcripts in the untreated and treated cells were assayed using Mu6500 chip set which contains probes to about 6500 rodent genes. The results are shown in Table 5. A subset of the genes stimulated or repressed by treatment with the interferon are shown in Table 7As shown in Table 5 and 7 below, a number of murine genes are stimulated or repressed by treatment with the interferon. Some of these genes are the murine or rat homolog of the human genes identified in Example 1 above. Because the array contains probes to rodent genes which have no counterpart on the Hu6800 GeneChip Arrays, these results also identify novel ISGs and IRGs that were not identified in Example 1.

EXAMPLE 3

Murine ISGs and IRGs were identified from cultures of primary mouse embryo fibroblasts incubated in the presence or absence of encephalomyocarditis virus and IFN-αBBD. Fibroblasts were obtained as described in Example 2 and The levels of transcripts in cells incubated in the presence of IFNα-BBDB and in the presence and absence of virus and in cells incubated in the absence of IFN-αBBDB and in the presence and absence of virus were assayed as described above in example 2. The results are shown in Table 6 below. These results shows that virus enhances the expression of certain IFN-a stimulated genes (see Table 8) and represses expression of certain IFN-a stimulated genes.

TABLE 4
ISGs and IRGs identified from human fibrosarcoma cells incubated in IFN-α, IFN-β or IFN-γ
		Un-
		treated		IFN-a				IFN-b				IFN-g
GenBank		In-		In-	Incr	Fold		In-	Incr	Fold		In-	Incr	Fold
Accession.	Entrez Definition — Afix Definition	tensity	B = A	tensity	Decr	Change	Sig	tensity	Decr	Change	Sig	tensity	Decr	Change	Sig
X67325	H. sapiens p27 mRNA	−7	*	1423	I	˜70.8	30.33	1018	I	˜50.6	23.03	167	I	˜8.0	3.23
M13755	Human interferon-induced 17-kDa/15-kDa protein “mRNA,” complete cds	148		2906	I	20.7	26.59	2262	I	16.3	20.49	120	MI	1.8	0.26
J04164	Human interferon-inducible protein 27-Sep “mRNA,” complete cds	62	*	1369	I	23.2	19.36	1288	I	21.9	18.22	442	I	8.2	5.37
X57522	H. sapiens RING4 cDNA	29	*	771	I	28	15.87	573	I	21	11.89	1379	I	49.2	26.56
M24594	Human interferon-inducible 56 Kd protein “mRNA,” complete cds	16	*	572	I	˜29.4	13.97	2477	I	˜124.6	46.62	0	NC	0	0
X02875	Human mRNA (3′-fragment) for (2′-5′) oligo A synthetase E “(1,8” kb RNA) — Also Rep	18	*	566	I	˜29.2	13.84	486	I	˜25.2	12	6	NC	0	0
M33882	Human p78 protein “mRNA,” complete cds	19	*	407	I	˜21.3	10.07	606	I	˜31.3	14.77	6	NC	0	0
U22970	16 Jun gene (interferon-inducible peptide precursor) extracted from Human interferon	−12	*	417	I	˜20.2	9.93	446	I	˜21.7	10.63	6	NC	0	0
U52513	Human RIG-G “mRNA,” complete cds	19	*	338	I	˜17.9	8.33	564	I	˜29.2	13.82	43	I	˜3.1	0.49
M87503	Human IFN-responsive transcription factor subunit “mRNA,” complete cds	50	*	449	I	10.1	6.48	428	I	9.6	6.11	342	I	7.9	4.58
AF008445	Homo sapiens phospholipid scramblase “mRNA,” complete cds. /gb = AF008445 /ntyp	72		521	I	8.2	5.86	650	I	10	7.76	135	I	2.9	0.75
U72882	Human interferon-induced leucine zipper protein (IFP35) “mRNA,” partial cds — Also	55		405	I	8.4	5.28	340	I	7.2	4.18	203	I	4.7	1.98
Z14982	MHC-encoded proteasome subunit gene LAMP7-E1 gene (proteasome subunit LMP	47	*	342	I	8.3	4.77	295	I	7.3	3.91	488	I	11.4	7.45
M62800	Human 52-kD SS-A/Ro autoantigen “mRNA,” complete cds	−34	*	238	I	˜10.2	4.74	165	I	˜6.6	2.62	160	I	˜6.3	2.47
X02874	Human mRNA for (2′-5′) oligo A synthetase E (1,6 kb RNA).	33	*	229	I	8	3.78	184	I	6.6	2.8	10	NC	0	0
L22342	Human nuclear phosphoprotein “mRNA,” complete cds	4	*	153	I	˜7.8	3.01	195	I	˜10.0	4.21	115	I	˜6.0	1.97
D49824	Human HLA-B null allele mRNA — “Also Represents: L42345, L11570, L11571, HG29	79		317	I	5	2.69	449	I	6.7	4.46	282	I	4.6	2.25
M97935	Human transcription factor ISGF-3 mRNA sequence — Also Represents: HUMISGF3A	52		205	I	4.9	2.11	394	I	8.5	5.27	103	I	3	0.7
U43142	Human vascular endothelial growth factor related protein VRP “mRNA,” complete cds	37	*	161	I	5.3	2.05	113	NC	0	0	227	I	7.1	3.35
M97936	Human transcription factor ISGF-3 mRNA sequence	−31	*	142	I	˜5.6	2.01	255	I	˜11.2	5.3	70	I	˜2.0	0.24
M30818	Human interferon-induced cellular resistance mediator protein (MxB) “mRNA,” compl	3	*	111	I	˜5.7	1.84	251	I	˜12.7	5.76	32	NC	0	0
M79463	Human PML-2 “mRNA,” complete CDS — “Also Represents: HG560-HT560, M82827”	70		210	I	4	1.6	209	I	4	1.58	180	I	3.6	1.24
X66401	LMP2 gene extracted from H. sapiens genes “TAP1,” “TAP2,” “LMP2,” LMP7 and DO	108		280	I	3.6	1.58	142	I	2.3	0.5	473	I	5.4	3.59
D50919	Human mRNA for KIAA0129 “gene,” complete cds	33		122	I	4.7	1.54	165	I	6	2.4	44	NC	0	0
L77701	Homo sapiens COX17 “mRNA,” complete cds	107		−90	D	˜5.3	1.53	−47	NC	0	0	−79	D	3.8	0.92
M87434	Human 71 kDa 2′5′ oligoadenylate synthetase (p69 2-5A synthetase) “mRNA,” comp	10	*	94	I	˜5.2	1.51	171	I	˜9.1	3.65	14	NC	0	0
Z35491	H. sapiens mRNA for novel glucocorticoid receptor-associated protein	−2	*	101	I	˜5.0	1.48	136	I	˜6.7	2.43	88	I	˜4.3	1.14
X74262	H. sapiens RbAp48 mRNA encoding retinoblastoma binding protein	24	*	95	I	5	1.44	151	I	7.3	2.79	76	I	4.2	1.02
M63838	Human interferon-gamma induced protein (IFI 16) “gene,” complete cds — Also Repre	8	*	91	I	˜4.9	1.38	246	I	˜12.7	5.7	59	I	˜3.3	0.64
M92642	Homo sapiens alpha-1 type XVI collagen (COL16A1) “mRNA,” complete cds	43	*	136	I	4.2	1.37	110	NC	0	0	147	I	4.4	1.54
J04611	Human lupus p70 (Ku) autoantigen protein “mRNA,” complete cds	524		726	I	2.4	1.21	729	I	2.4	1.22	501	I	2	0.64
X82200	H. sapiens Staf50 mRNA	46		131	MI	3.9	1.2	228	I	6	2.79	9	NC	0	0
G2915-HT305	Major Histocompatibility “Complex,” Class “I,” E (Gb:M20022)	151		294	I	3	1.17	385	I	3.6	1.82	761	I	6.1	5.2
K03460	Human alpha-tubulin isotype H2-alpha “gene,” last exon	77		177	I	3.3	1.09	117	NC	0	0	150	NC	0	0
AB000464	Human “mRNA,” clone “RES4-24A,” exon “1,” “2,” “3,” 4	89	*	−72	MD	˜4.5	1.08	−26	NC	0	0	−29	NC	0	0
Z84483	Human DNA sequence from PAC “46H23,” BRCA2 gene region chromosome 13q12	80	*	−79	MD	˜4.0	0.98	−77	D	˜4.0	0.97	25	NC	0	0
M55542	Human guanylate binding protein isoform I (GBP-2) “mRNA,” complete cds	12	*	70	I	˜4.1	0.96	163	I	˜8.7	3.44	135	I	˜7.3	2.65
U59321	Human DEAD-box protein p72 (P72) “mRNA,” complete cds	−37	*	107	I	˜3.5	0.92	69	I	˜1.6	0.13	5	NC	0	0
IG658-HT658	Major Histocompatibility “Complex,” Class “I,” C (Gb:X58536) — “Also Similar To: L42	120		217	I	2.8	0.91	243	I	3	1.1	156	I	2.3	0.52
L05072	Homo sapiens interferon regulatory factor 1 “gene,” complete cds — Also Represents:	22	*	66	I	4	0.89	95	I	5.3	1.57	660	I	31.1	15.38
D89052	Human mRNA for proton-ATPase-like “protein,” complete cds	408		504	I	2.2	0.88	312	I	1.8	0.38	598	I	2.5	1.18
D85815	Human DNA for “rhoHP1,” complete cds	81	*	−62	MD	˜4.0	0.87	−9	NC	0	0	−28	NC	0	0
D28137	Human mRNA for “BST-2,” complete cds	22	*	64	I	3.9	0.84	78	I	4.5	1.15	10	I	1.4	0.04
D63160	Human DNA for lectin P35	78	*	−65	D	˜3.9	0.84	−27	NC	0	0	−41	NC	0	0
M79462	Human PML-1 “mRNA,” complete CDS	35	*	86	MI	3.5	0.83	100	NC	0	0	90	I	3.6	0.88
U79294	Human clone 23748 “mRNA,” complete cds.	366		−226	D	2.6	0.82	−292	D	5	2.54	−201	NC	0	0
L40387	Homo sapiens thyroid receptor interactor (TRIP14) “gene,” 3′ end of cds. /gb = L40387	117	*	201	I	2.7	0.82	299	I	3.5	1.6	−8	NC	0	0
D84557	Human mRNA for “HsMcm6,” complete cds	166		−113	D	3.1	0.79	68	NC	0	0	−37	NC	0	0
D86971	Human mRNA for KIAA0217 “gene,” partial cds	74		−60	MD	˜3.7	0.76	−11	NC	0	0	−20	MD	1.4	0.04
M22877	Human somatic cytochrome c (HCS) “gene,” complete cds	93		159	I	2.7	0.73	239	I	3.6	1.44	70	MI	1.7	0.17
M16424	Human beta-hexosaminidase alpha chain (HEXA) gene	67	*	−73	MD	˜3.3	0.71	−12	NC	0	0	−1	NC	0	0
X90846	H. sapiens mRNA for mixed lineage kinase 2 — Also Represents: Z48615	17	*	54	I	˜3.6	0.68	79	MI	˜4.8	1.24	79	MI	˜4.8	1.24
X75755	H. sapiens PR264 gene — Also Represents: HG3088-HT3261 Same Unigene Cluster	150		214	I	2.4	0.68	192	I	2.3	0.57	176	I	2.2	0.49
X04602	Human mRNA for interleukin BSF-2 (B-cell differentiation factor) — “Also Represents:	21	*	55	I	3.6	0.68	44	I	3.1	0.48	43	I	3	0.46
U04285	Human lysosomal acid “lipase,” cholesteryl ester hydrolase (LIPA) gene — “Also Repr	17	*	52	I	˜3.5	0.63	64	I	˜4.0	0.89	14	NC	0	0
U09825	Human acid finger protein “mRNA,” complete cds	76	*	124	I	2.6	0.61	138	I	2.8	0.73	77	I	2	0.27
M24470	Human glucose-6-phosphate “dehydrogenase,” complete cds	18	*	50	MI	˜3.4	0.61	53	NC	0	0	27	NC	0	0
U89606	Human pyridoxal kinase “mRNA,” complete cds.	28	*	61	MI	3.2	0.6	140	I	6	2.19	65	NC	0	0
U07000	BCR gene (unknown) extracted from Human breakpoint cluster region (BCR) “gene,”	77		−53	MD	3.2	0.58	−47	NC	0	0	−56	D	3.7	0.71
U83463	Human scafiold protein Pbp1 “mRNA,” complete cds.	13	*	52	I	˜3.2	0.56	52	NC	0	0	25	I	˜1.9	0.12
U88964	Human HEM45 “mRNA,” complete cds.	276		287	I	2	0.54	180	I	1.7	0.24	29	NC	0	0
M16707	Human histone H4 “gene,” complete “cds,” clone FO108 — Also Represents: X00038	62		−53	D	˜3.1	0.53	−61	D	˜3.1	0.56	−78	D	˜3.1	0.64
J04080	Human complement component Cir “mRNA,” complete cds	11	*	51	I	˜3.1	0.52	55	I	˜3.3	0.59	93	I	˜5.2	1.5
Z97054	DNA binding protein from Human DNA sequence from PAC 339A18 on chromosome	145		−90	MD	2.6	0.52	−24	NC	0	0	−21	NC	0	0
U41515	Human deleted in split hand/split foot 1 (DSS1) “mRNA,” complete cds	67		102	I	2.5	0.51	134	I	3	0.81	50	I	1.8	0.15
U15641	Human transcription factor E2F-4 “mRNA,” complete cds — Also Represents: S75174	141		−87	D	2.6	0.51	−39	NC	0	0	2	NC	0	0
U65785	Human 150 kDa oxygen-regulated protein ORP150 “mRNA,” complete cds	776		−365	D	1.9	0.5	−292	D	1.6	0.28	−354	D	1.8	0.46
M31520	Human ribosomal protein S24 mRNA — Also Represents: HG3214-HT3391	1583		948	I	1.6	0.5	562	I	1.4	0.21	91	NC	0	0
G3342-HT351	Id1 — Also Represents: S78825	851		609	I	1.7	0.49	433	I	1.5	0.27	153	NC	0	0
X61123	Human BTG1 mRNA	80		112	I	2.4	0.49	78	I	2	0.26	103	I	2.3	0.42
J00105	Human beta-2 microglobulin gene “mRNA,” 3′ end — Also Represents: V00567	1019		681	I	1.7	0.48	1131	I	2.1	1.15	277	I	1.3	0.11
X57351	Human 1-8D gene from interferon-inducible gene family — Also Represents: HG1538-	264		261	I	2	0.48	311	I	2.2	0.65	68	NC	0	0
U93205	Human nuclear chloride ion channel protein (NCC27) “mRNA,” complete cds	2328		1224	I	1.5	0.48	1071	I	1.5	0.38	24	NC	0	0
U90426	Human nuclear RNA “helicase,” complete cds	708		528	I	1.7	0.48	325	MI	1.5	0.21	449	I	1.6	0.37
G4063-HT433	Transcription Factor Hbf-2 — Also Represents: X74142	59	*	−50	MD	˜3.0	0.48	−18	NC	0	0	−29	NC	0	0
U10439	Human double-stranded RNA adenosine deaminase “mRNA,” complete cds	152		172	I	2.1	0.46	298	I	3	1.18	153	I	2	0.37
L26247	Homo sapiens sul1iso1 “mRNA,” complete cds	1468		853	I	1.6	0.45	406	I	1.3	0.13	483	I	1.3	0.17
		1001		645	I	1.6	0.45	269	I	1.3	0.1	10	NC	0	0
		80	*	−52	MD	2.8	0.45	−58	NC	0	0	−36	NC	0	0
U32849	Human Hou “mRNA,” complete cds	18	*	42	I	˜3.0	0.44	74	I	˜4.6	1.14	31	MI	˜2.4	0.26
G4322-HT459	“Tubulin,” Beta	306		275	I	1.9	0.44	231	I	1.8	0.32	253	I	1.8	0.38
		1744		946	I	1.6	0.44	391	I	1.2	0.1	206	NC	0	0
		124	*	145	MI	2.2	0.44	−10	NC	0	0	88	NC	0	0
Z54367	H. sapiens gene for plectin — Also Represents: U53204	195		−110	D	2.3	0.44	−38	NC	0	0	−46	NC	0	0
D38048	Human mRNA for proteasome subunit “z,” complete cds	764		524	I	1.7	0.43	415	I	1.5	0.29	206	I	1.3	0.09
Z12962	H. sapiens mRNA for homologue to yeast ribosomal protein L41	14040		−3328	D	1.3	0.43	−2342	MD	1.2	0.22	−2409	NC	0	0
X95404	H. sapiens mRNA for non-muscle type cofilin	6834		−1921	D	1.4	0.43	−1444	NC	0	0	−1117	NC	0	0
D28915	Human gene for hepatitis C-associated microtubular aggregate protein p44	27	*	48	MI	2.8	0.42	102	I	4.8	1.44	0	NC	0	0
M60858	Human nucleolin “gene,” complete cds	740		−332	D	1.8	0.42	365	I	1.5	0.24	−281	D	1.6	0.28
D10704	Human mRNA for choline kinase	80		−51	D	2.7	0.42	−25	NC	0	0	−41	NC	0	0
X02751	Human N-ras mRNA and flanking regions	2	*	52	I	˜2.7	0.41	47	I	˜2.4	0.31	16	NC	0	0
L07633	Homo sapiens (clone 1950.2) interferon-gamma IEF SSP 5111 “mRNA,” complete cd	250		228	I	1.9	0.41	161	I	1.6	0.22	464	I	2.9	1.38
U29680	Human A1 protein “mRNA,” complete cds	26	*	46	I	2.8	0.41	22	NC	0	0	23	NC	0	0
		8662		−2225	D	1.3	0.4	−2314	D	1.4	0.43	−1605	D	1.2	0.21
M64174	Human protein-tyrosine kinase (JAK1) “mRNA,” complete cds	54		−48	D	˜2.7	0.4	11	NC	0	0	−34	NC	0	0
V00563	Human gene for immunoglobulin mu, part of exon 8.	123		−73	D	2.4	0.4	−57	NC	0	0	−35	NC	0	0
U07550	Human chaperonin 10 “mRNA,” complete cds	271		236	I	1.9	0.39	30	NC	0	0	166	I	1.6	0.21
D63486	Human mRNA for KIAA0152 “gene,” complete cds	221		−118	D	2.1	0.39	3	NC	0	0	−61	NC	0	0
M94362	Human lamin.B2 (LAMB2) “mRNA,” partial cds	574		−261	D	1.8	0.39	199	NC	0	0	−14	NC	0	0
Z25521	H. sapiens integrin associated protein mRNA, complete CDS, — Also Represents: X69	99		112	I	2.1	0.37	138	I	2.4	0.53	75	I	1.8	0.18
Z29066	H. sapiens nek2 mRNA for protein kinase — Also Represents: U11050	26	*	43	I	2.7	0.37	46	I	2.8	0.41	22	NC	0	0
U60062	Human FEZ1-T “mRNA,” alternatively spliced “form,” complete cds	60		−38	D	2.8	0.37	−30	NC	0	0	−42	MD	˜3.0	0.45
M34516	Human omega light chain protein 14.1 (lg lambda chain related) gene	14	*	41	MI	˜2.7	0.37	8	NC	0	0	19	NC	0	0
U82987	Human Bcl-2 binding component 3 (bbc3) “mRNA,” partial cds	−27	*	74	I	˜2.3	0.36	35	NC	0	0	130	I	˜5.1	1.74
Z14244	H. sapiens cox VIIb mRNA for cytochrome c oxidase subunit VIIb	441		320	I	1.7	0.36	180	NC	0	0	195	I	1.4	0.16
D38521	Human mRNA for KIAA0077 “gene,” partial cds	80		−49	D	2.6	0.36	29	NC	0	0	−33	NC	0	0
G3859-HT412	Mage-4a Antigen	53		−45	D	˜2.6	0.36	−47	NC	0	0	−29	NC	0	0
U63090	Human Gal “beta-1,3” GalNAc “alpha-2,3” sialyltransferase (ST3Gal II) “mRNA,” com	12	*	41	MI	˜2.7	0.36	−10	NC	0	0	11	NC	0	0
J02923	Human 65-kilodalton phosphoprotein (p65) “mRNA,” complete cds	102		109	MI	2.1	0.34	195	I	2.9	0.92	70	I	1.7	0.16
G2917-HT306	Major Histocompatibility “Complex,” Class “I,” E (Gb:M21533)	239		198	I	1.8	0.34	278	I	2.2	0.6	700	I	3.9	2.87
U67122	Human ublquitin-related protein SUMO-1 “mRNA,” complete cds. — “Also Represents	107		113	I	2.1	0.34	151	I	2.4	0.56	19	NC	0	0
G1400-HT140	Carboxyl “Methyltransferase,” “Aspartate,” Alt. Splice 1 — Also Represents: D13892	100		108	I	2.1	0.34	80	I	1.8	0.2	39	I	1.4	0.06
G2815-HT293	“Myosin,” Light “Chain,” “Alkali,” Smooth Muscle “(Gb:U02629),” “Non-Muscle,”	2243		974	I	1.4	0.34	415	I	1.2	0.08	370	NC	0	0
	Alt. S
		8595		−2055	D	1.3	0.34	−1055	NC	0	0	−1952	D	1.3	0.31
D87071	Human mRNA for KIAA0233 “gene,” complete cds	126		−71	D	2.3	0.34	19	NC	0	0	12	MI	1.1	0.01
M87860	Human S-lac lectin L-14-II (LGALS2) gene	−10	*	59	MI	˜2.4	0.34	49	NC	0	0	−4	NC	0	0
X15949	Human mRNA for interferon regulatory factor-2 (IRF-2)	5	*	45	MI	˜2.5	0.33	72	I	˜3.9	0.89	36	NC	0	0
Z47087	H. sapiens mRNA for RNA polymerase II elongation factor-like protein	134		129	I	2	0.33	68	I	1.5	0.11	105	I	1.8	0.23
M58028	Human ublquitin-activating enzyme E1 (UBE1) “mRNA,” complete cds	626		−263	D	1.7	0.33	−180	NC	0	0	−208	D	1.5	0.18
S73591	brain-expressed HHCPA78 homolog “[human,” HL-60 acute promyelocytic leukemia	4	*	46	MI	˜2.5	0.33	29	NC	0	0	13	NC	0	0
M94556	Human mitochondrial specific single stranded DNA binding protein “mRNA,” complete	309		233	I	1.8	0.32	310	I	2	0.53	272	I	1.9	0.42
X02530	Human mRNA for gamma-interferon inducible early response gene (with homology to	54		−34	D	2.7	0.32	−47	D	˜2.7	0.38	−17	NC	0	0
Z26491	H. sapiens gene for catechol O-methyltransferase — Also Represents: M65213	381		268	I	1.7	0.32	178	I	1.5	0.16	239	I	1.6	0.26
U67319	Human Lice2 beta cysteine protease “mRNA,” complete cds.	31	*	46	MI	2.5	0.32	27	MI	1.9	0.13	38	NC	0	0
X01703	Human gene for alpha-tubulin (b alpha 1)	316		237	I	1.7	0.32	118	NC	0	0	263	I	1.8	0.39
X60489	Human mRNA for elongation factor-1-beta	2705		1065	I	1.4	0.32	−219	NC	0	0	645	I	1.2	0.14
U90546	Human butyrophilin (BTF4) “mRNA,” complete cds	40		−116	D	˜2.0	0.32	−25	NC	0	0	−26	NC	0	0
		11471		−2433	D	1.3	0.31	−3146	D	1.4	0.52	−1252	NC	0	0
U62962	Human Int-6 “mRNA,” complete cds	237		−117	D	2	0.31	236	I	2	0.46	−79	MD	1.5	0.12
U32129	Human mRNA for HLA class-I (HLA-A26) heavy “chain,” complete cds (clone cMIY-1	252		196	I	1.8	0.31	208	I	1.8	0.34	266	I	2.1	0.52
X57351	Human 1-8D gene from interferon-inducible gene family — Also Represents: HG1538-	5002		1593	I	1.3	0.31	856	I	1.2	0.11	557	NC	0	0
U53204	Human plectin (PLEC1) “mRNA,” complete cds	460		−200	D	1.8	0.31	−125	D	1.4	0.1	−53	MD	1.1	0.02
M25753	Human cyclin B “mRNA,” 3′ end	345		247	I	1.7	0.31	122	NC	0	0	255	I	1.7	0.33
M22760	Homo sapiens nuclear-encoded mitochondrial cytochrome c oxidase Va subunit “mR	528		331	I	1.6	0.31	131	NC	0	0	292	I	1.6	0.25
U62136	Human putative enterocyte differentiation promoting factor “mRNA,” partial cds	63		−38	D	2.5	0.31	20	NC	0	0	−31	D	2	0.16
X07315	Human gene for PP15 (placental protein 15)	528		332	I	1.6	0.31	38	NC	0	0	145	MI	1.3	0.08
		51	*	63	MI	2.2	0.31	30	NC	0	0	26	NC	0	0
L25851	Homo sapiens integrin alpha E “mRNA,” complete cds	33		46	MI	2.4	0.31	21	NC	0	0	38	NC	0	0
V00594	Human mRNA for metallothionein from cadmium-treated cells — Also Represents: J00	17001		−3191	D	1.2	0.3	−4549	D	1.4	0.6	−2617	NC	0	0
X89398	ung gene “(uracli-DNA-glycosylase,” UNG2) extracted from H. sapiens ung gene for u	105		104	I	2	0.3	8	NC	0	0	136	I	2.3	0.48
IG162-HT316	Tyrosine “Kinase,” Receptor “Axl,” Alt. Splice 2	240		185	MI	1.8	0.3	110	NC	0	0	210	I	1.9	0.37
U73824	Human p97 “mRNA,” complete cds	1652		−544	D	1.5	0.3	−490	NC	0	0	−524	D	1.5	0.27
		48		59	MI	2.2	0.3	21	NC	0	0	8	NC	0	0
		1261		601	I	1.5	0.3	261	NC	0	0	−164	NC	0	0
J03260	Human transducin alpha-subunit (GNAZ) “mRNA,” complete cds — Also Represents:	−8	*	54	I	˜2.3	0.3	31	NC	0	0	36	NC	0	0
D45248	Human mRNA for proteasome activator hPA28 subunit “beta,” complete cds	418		269	I	1.6	0.29	254	I	1.6	0.26	339	I	1.8	0.43
M10942	Human metaliothlonein-ie gene (hMT-ie)	832		−314	D	1.6	0.29	−214	D	1.3	0.12	−141	NC	0	0
X83492	H. sapiens mRNA for Fas/Apo-1 (clone “pCRTM11-Fasdelta(4,7)).” /gb = X83492 /ntyp	6	*	43	I	˜2.4	0.29	45	NC	0	0	46	I	˜2.6	0.35
Y08614	H. sapiens mRNA for CRM1 protein	157		−80	MD	2.1	0.29	26	NC	0	0	−78	NC	0	0
L14778	Human calmodulin-dependent protein phosphatase catalytic subunit (PPP3CA) “mRN	7	*	40	I	˜2.4	0.28	69	I	˜3.8	0.84	19	I	˜1.3	0.03
M17885	Human acidic ribosomal phosphoprotein P0 “mRNA,” complete cds	8139		−1797	D	1.3	0.28	−2105	D	1.3	0.39	−739	NC	0	0
U66711	Human Ly-6-related protein-9804 “gene,” complete cds — Also Represents: U56145	274		197	I	1.7	0.28	230	I	1.8	0.37	132	NC	0	0
X71490	H. sapiens mRNA for vacuolar proton “ATPase,” subunit D	135	*	118	MI	1.9	0.28	88	NC	0	0	146	MI	2.1	0.4
		10371		−2123	D	1.3	0.28	−38	NC	0	0	−2241	D	1.3	0.31
U90313	Human glutathione-S-transferase homolog “mRNA,” complete cds.	1571		676	I	1.4	0.28	−117	NC	0	0	559	I	1.4	0.21
L02426	Human 26S protease (S4) regulatory subunit “mRNA,” complete cds	310		210	I	1.7	0.27	430	I	2.4	0.93	144	NC	0	0
K01900	Human lymphocyte interferon alpha type 201 “mRNA,” complete cds	46		−43	D	˜2.3	0.27	−48	D	˜2.3	0.29	−28	D	˜2.3	0.22
L25081	Human GTPase (rhoC) “mRNA,” complete cds	432		264	I	1.6	0.27	221	I	1.5	0.2	480	I	2.1	0.75
Z22548	H. sapiens thiol-specific antioxidant protein mRNA	147		124	I	1.8	0.27	98	MI	1.7	0.18	135	I	1.9	0.32
M15958	Human gastrin “gene,” complete cds	41	*	−69	MD	˜2.1	0.27	−37	NC	0	0	−56	D	˜2.1	0.24
D14689	Human mRNA for KIAA0023 “gene,” complete cds	96		−52	MD	2.2	0.27	−22	NC	0	0	−20	NC	0	0
D80000	Human mRNA for KIAA0178 “gene,” partial cds	49		−34	D	˜2.4	0.27	29	NC	0	0	2	NC	0	0
X74794	H. sapiens P1-Cdc21 mRNA	437		−183	D	1.7	0.27	−97	NC	0	0	−145	NC	0	0
		10791		−2116	MD	1.2	0.26	−2350	MD	1.3	0.32	−1440	NC	0	0
L17128	Homo sapiens (clone H4/H16) gamma-glutamic carboxylase “mRNA,” complete cds	9	*	37	I	˜2.3	0.26	27	NC	0	0	39	I	˜2.4	0.29
D85131	Human mRNA for Myc-associated zinc-finger protein of human “islet,” complete cds	66		−38	D	2.3	0.26	−24	NC	0	0	13	NC	0	0
X54936	H. sapiens mRNA for placenta growth factor (PIGF)	118		104	MI	1.9	0.28	36	NC	0	0	8	NC	0	0
Z29064	H. sapiens AF-1p mRNA	23	*	32	I	2.4	0.25	66	I	3.9	0.85	19	I	1.8	0.11
M19267	Human tropomyosin “mRNA,” complete cds — Also Represents: X12369 Same Unige	680		347	I	1.5	0.25	366	I	1.5	0.27	143	NC	0	0
G1153-HT115	Nucleoside Diphosphate Kinase Nm23-H2s	1130		496	MI	1.4	0.25	470	MI	1.4	0.23	449	I	1.4	0.21
U96915	Homo sapiens sin3 associated polypeptide p18 (SAP18) “mRNA,” complete cds.	537		296	I	1.6	0.25	78	MI	1.1	0.03	−16	NC	0	0
D50405	Human mRNA for RPD3 “protein,” complete cds	223		160	I	1.7	0.25	139	NC	0	0	286	I	2.3	0.69
X05610	Human mRNA for type IV collagen alpha-2 chain	660		−244	D	1.6	0.25	−42	NC	0	0	−205	D	1.4	0.16
U23946	Human putative tumor suppressor (LUCA15) “mRNA,” complete cds	54		−32	MD	2.4	0.25	−5	NC	0	0	−13	NC	0	0
U76272	Human diadenosine triphosphate (Ap3A) hydrolase (FHIT) “gene,” 5′ of	−10	*	53	I	˜2.1	0.25	−1	NC	0	0	23	NC	0	0
U54644	Human tub homolog “mRNA,” complete cds — Also Represents: U82467	148		−72	D	1.9	0.24	−66	MD	1.8	0.19	−51	NC	0	0
G3044-HT374	“Fibronectin,” Alt. Splice 1 — “Also Represents: HG3044-HT2527, X02761”	673		−245	D	1.6	0.24	193	I	1.3	0.09	−235	D	1.5	0.22
G2815-HT293	“Myosin,” Light “Chain,” “Alkali,” Smooth Muscle “(Gb:U02629),” “Non-Muscle,” Alt. S	1347		555	I	1.4	0.24	245	I	1.2	0.06	5	NC	0	0
U63824	Human transcription factor RTEF-1 (RTEF1) “mRNA,” complete cds	40	*	47	I	2.2	0.24	23	NC	0	0	122	I	4	1.23
X65463	H. sapiens mRNA for MHC class I promoter binding protein	65		64	MI	2	0.24	33	NC	0	0	91	MI	2.4	0.44
		46	*	−34	MD	˜2.3	0.24	−22	NC	0	0	−25	NC	0	0
L37042	Homo sapiens casein kinase I alpha isoform (CSNK1A1) “mRNA,” complete cds	102		−53	D	2.1	0.24	47	NC	0	0	−13	NC	0	0
M87284	Human 69 kDa 2′5′ oligoadenylate sythetase (P69 2-5A synthetase) “mRNA,” comp	52	*	56	I	2.1	0.24	86	NC	0	0	6	NC	0	0
X72727	H. sapiens tunp mRNA for transformation upregulated nuclear protein	523		274	I	1.5	0.23	277	I	1.5	0.23	101	NC	0	0
D00760	Human mRNA for proteasome subunit HC3	231		156	I	1.7	0.23	110	I	1.5	0.13	67	NC	0	0
J03909	Human gamma-interferon-inducible protein (IP-30) “mRNA,” complete cds	4	*	40	MI	˜2.2	0.23	31	MI	˜1.8	0.12	235	I	˜12.0	5.33
X79234	H. sapiens mRNA for ribosomal protein L11	5490		−1212	D	1.3	0.23	−1371	NC	0	0	−1487	D	1.4	0.35
M62810	Human mitochondrial transcription factor 1 “mRNA,” complete cds	46		50	MI	2.1	0.23	82	NC	0	0	−20	NC	0	0
X64707	H. sapiens BBC1 mRNA	3338		1023	MI	1.3	0.23	549	NC	0	0	860	NC	0	0
G1980-HT202	“Tubulin,” Beta 2	6620		−1350	D	1.3	0.22	−1817	D	1.4	0.4	−461	NC	0	0
X98172	H. sapiens mRNA for MACH-alpha-1 protein	23	*	30	MI	2.3	0.22	42	I	2.8	0.39	51	I	3.2	0.55
U86782	Human 26S proteasome-associated pad1 homolog (POH1) “mRNA,” complete cds. /	293		181	I	1.6	0.22	228	I	1.8	0.33	9	NC	0	0
M84349	Human transmembrane protein (CD59) gene	401		220	I	1.5	0.22	217	I	1.5	0.21	185	I	1.5	0.16
X71874	proteasome-like subunit MECL-1 gene extracted from H. sapiens genes for proteason	184		128	I	1.7	0.22	108	I	1.6	0.16	379	I	3.1	1.41
D00763	Human mRNA for proteasome subunit HC9	268		170	I	1.6	0.22	95	MI	1.4	0.08	13	NC	0	0
U09564	Human serine kinase “mRNA,” complete cds	87		−45	D	2.1	0.22	−10	NC	0	0	−48	D	2.3	0.28
M11353	Human H3.3 histone class C “mRNA,” complete cds	914		397	I	1.4	0.22	39	NC	0	0	17	NC	0	0
M17886	Human acidic ribosomal phosphoprotein P1 “mRNA,” complete cds	7275		−1429	MD	1.2	0.21	−1968	D	1.4	0.4	−979	NC	0	0
U47634	Human beta-tubulin class III isotype (beta-3) “mRNA,” complete cds	348		197	I	1.6	0.21	210	MI	1.6	0.24	290	I	1.8	0.41
AB000584	Human mRNA for TGF-beta superfamily “protein,” complete cds	1134		445	I	1.4	0.21	406	I	1.4	0.18	222	I	1.2	0.07
X13794	H. sapiens lactate dehydrogenase B gene exon 1 and 2 (EC 1.1.1.27) (and joined CD	1551		−448	D	1.4	0.21	−211	NC	0	0	−699	D	1.8	0.62
M63180	Human threonyl-tRNA synthetase “mRNA,” complete cds	218		−95	D	1.8	0.21	119	NC	0	0	−90	D	1.7	0.18
		87		73	I	1.8	0.21	53	NC	0	0	29	NC	0	0
D12686	Human mRNA for eukaryotic initiation factor 4 gamma (elF-4 gamma)	426		−162	D	1.6	0.21	−3	NC	0	0	−70	NC	0	0
D31762	Human mRNA for KIAA0057 “gene,” complete cds	148		−69	D	1.9	0.21	52	NC	0	0	−24	NC	0	0
G4334-HT460	Glycogenin — Also Represents: U31525	270		164	I	1.6	0.21	116	NC	0	0	53	NC	0	0
U00802	Human drebrin E2 mRNA “(DBN1),” complete cds — Also Represents: D17530	83		−42	D	2	0.21	−15	NC	0	0	−4	NC	0	0
U05681	Human proto-oncogene BCL3 gene — Also Represents: M31732	169		−77	D	1.8	0.21	−61	NC	0	0	7	NC	0	0
U46571	Human tetratricopeptide repeat protein (tpr2) “mRNA,” complete cds	82		−42	D	2.1	0.21	−7	NC	0	0	−43	NC	0	0
X14329	Human mRNA for carboxypeptidase N small subunit (EC 3.4.17.3)	79	*	−41	MD	2.1	0.21	−66	NC	0	0	−29	NC	0	0
X89894	H. sapiens mRNA for nuclear receptor	18	*	28	I	˜2.3	0.21	4	NC	0	0	37	NC	0	0
M19311	Human calmodulin “mRNA,” complete cds — Also Represents: D45887	2009		661	I	1.3	0.2	640	I	1.3	0.19	−200	NC	0	0
U37689	Human RNA polymerase II subunit (hsRPB8) “mRNA,” complete cds	573		269	I	1.5	0.2	223	I	1.4	0.14	400	I	1.7	0.39
D38583	Human mRNA for “calgizzarin,” complete cds	802		348	I	1.4	0.2	199	I	1.2	0.08	424	I	1.5	0.29
M34539	Human FK506-binding protein (FKBP) “mRNA,” complete cds	1008		−310	D	1.4	0.2	−134	D	1.2	0.04	−306	D	1.4	0.19
M14091	Human thyroxine-binding globulin “mRNA,” complete cds	43		−30	D	˜2.2	0.2	−10	NC	0	0	−58	D	˜2.2	0.27
X68277	H. sapiens CL 100 mRNA for protein tyrosine phosphatase	155		109	I	1.7	0.2	38	NC	0	0	92	I	1.6	0.15
J04029	Homo sapiens keratin 10 type I intermediate filament (KRT 10) “mRNA,” complete cds	401		210	I	1.5	0.2	59	NC	0	0	93	NC	0	0
L32977	Homo sapiens (clone I17252) ubiquinol cytochrome c reductase Rieske iron-sulphur	460		229	I	1.5	0.2	78	NC	0	0	50	NC	0	0
U57341	Human neurofilament triplet L protein “mRNA,” partial cds. /gb = U57341 /ntype = RNA	695		−229	D	1.5	0.19	−265	D	1.6	0.27	−124	NC	0	0
J04168	Human leukoslatin “mRNA,” complete cds	44		−25	D	˜2.2	0.19	−33	D	˜2.2	0.22	−20	D	1.8	0.11
D87465	Human mRNA for KIAA0275 “gene,” complete cds	43		−31	MD	˜2.1	0.19	−29	D	˜2.1	0.19	−30	NC	0	0
U49441	Human mitochondrial trifunctional protein beta subunit “mRNA,” partial cds. /gb = U49	54	*	−29	MD	2.2	0.19	−27	D	2	0.15	−3	NC	0	0
U17760	Human laminin S B3 chain (LAMB3) gene	541		−189	D	1.5	0.19	−80	D	1.2	0.03	−113	NC	0	0
X76717	H. sapiens MT-11 mRNA	425		210	I	1.5	0.19	−208	NC	0	0	331	I	1.8	0.4
M20778	Homo “sapien,” alpha-3 (VI) collagen — Also Represents: X52022	51		−28	D	2.2	0.19	−15	NC	0	0	−38	D	˜2.6	0.32
M20902	Human apolipoprotein C-I (VLDL) “gene,” complete cds	65		−33	D	2.1	0.19	−29	NC	0	0	−18	D	1.4	0.04
		430		214	I	1.5	0.19	104	NC	0	0	67	NC	0	0
M22538	Human nuclear-encoded mitochondrial NADH-ublquinone reductase 24Kd subunit “m	591		268	I	1.5	0.19	122	NC	0	0	67	NC	0	0
X69111	H. sapiens HLH 1R21 mRNA for helix-loop-helix protein	1185		432	I	1.4	0.19	45	NC	0	0	−1	NC	0	0
X63563	H. sapiens mRNA for RNA polymerase II 140 kDa subunit	56		49	I	1.9	0.18	174	I	4.1	1.51	32	NC	0	0
U84573	Homo sapiens lysyl hydroxylase isoform 2 (PLOD2) “mRNA,” complete cds	58		−30	MD	2.1	0.18	103	I	2.8	0.61	−35	D	2.5	0.29
M23114	Homo sapiens calcium-ATPase (HK1) “mRNA,” complete cds	205		125	MI	1.6	0.18	194	I	1.9	0.39	119	I	1.6	0.17
U07806	Human camptothecin resistant clone CEM/C2 DNA topoisomerase I “mRNA,” partial	89		−43	D	1.9	0.18	103	I	2.2	0.36	−38	D	1.7	0.13
X55954	Human mRNA for HL23 ribosomal protein homologue	5404		−1034	D	1.2	0.18	−1065	MD	1.2	0.19	−1330	D	1.3	0.29
Z25749	H. sapiens gene for ribosomal protein S7	3451		878	I	1.3	0.18	636	I	1.2	0.1	−24	NC	0	0
M73780	Human integrin beta-8 subunit “mRNA,” complete cds	40		−38	D	˜2.0	0.18	0	NC	0	0	−24	D	˜2.0	0.14
X51956	Human ENO2 gene for neuron specific (gamma) enolase	65	*	54	I	1.8	0.18	2	NC	0	0	33	MI	1.5	0.07
M16937	Human homeo box c1 “protein,” “mRNA,” complete cds	29	*	31	MI	2.1	0.18	19	NC	0	0	12	NC	0	0
M27318	Human interferon (IFN-alpha-M1) “mRNA,” complete cds	69	*	−35	D	2	0.18	−37	NC	0	0	−25	NC	0	0
M60854	Human ribosomal protein S16 “mRNA,” complete cds	9238		−1571	MD	1.2	0.18	−1818	NC	0	0	−1395	NC	0	0
U01120	Human glucose-6-phosphatase “mRNA,” complete cds	43	*	−26	D	˜2.1	0.18	−16	NC	0	0	−16	NC	0	0
U04209	Human associated microfibrillar protein “mRNA,” complete cds	16	*	26	I	˜2.1	0.18	41	NC	0	0	20	NC	0	0
U04241	Human homolog of Drosophila enhancer of split m9/m10 “mRNA,” complete cds	496		−173	D	1.5	0.18	−129	NC	0	0	−74	NC	0	0
U07132	Human steroid hormone receptor Ner-I “mRNA,” complete cds	183		−77	MD	1.7	0.18	−38	NC	0	0	−12	NC	0	0
U59423	Human Smad1 “mRNA,” complete cds.	66		−33	D	2	0.18	−19	NC	0	0	−11	NC	0	0
V00599	Human mRNA fragment encoding beta-tubulin. (from clone D-beta-1) — Also Represe	5508		−1071	D	1.2	0.18	−669	NC	0	0	−612	NC	0	0
U61397	Human ublquitin-homology domain protein PIC1 “mRNA,” complete cds — Also Repre	119		82	I	1.7	0.17	101	I	1.8	0.25	−14	NC	0	0
D26599	Human mRNA for proteasome subunit “HsC7-1,” complete cds	807		319	I	1.4	0.17	329	I	1.4	0.18	446	I	1.6	0.31
G1071-HT107	Bone Morphogenetic Protein 3	39		−35	D	˜2.0	0.17	−34	D	˜2.0	0.16	−23	MD	˜2.0	0.13
U62966	Human Na+/nucleoskie cotransporter (hCNT1a) “mRNA,” complete cds	93	*	−43	MD	1.9	0.17	−26	MD	1.4	0.05	−36	NC	0	0
U68566	Human HS1 binding protein HAX-1 “mRNA,” nuclear gene encoding mitochondrial “p	814		311	I	1.4	0.17	−159	NC	0	0	182	I	1.2	0.07
U11791	Human cyclin H “mRNA,” complete cds	60		50	MI	1.8	0.17	22	NC	0	0	20	MI	1.3	0.04
		69		−34	D	2	0.17	25	NC	0	0	−13	NC	0	0
M59465	Human tumor necrosis factor alpha inducible protein A20 “mRNA,” complete cds	41	*	−30	MD	˜2.0	0.17	15	NC	0	0	−23	NC	0	0
U11861	Human G10 homolog (edg-2) “mRNA,” complete cds	619		264	I	1.4	0.17	189	NC	0	0	255	NC	0	0
U94586	Human NADH:ublquinone oxidoreductase MLRQ subunit “mRNA,” complete cds.	1441		471	I	1.3	0.17	−527	NC	0	0	−145	NC	0	0
M22382	Human mitochondrial matrix protein P1 (nuclear encoded) “mRNA,” complete cds	880		326	I	1.4	0.16	966	I	2.1	1.05	67	NC	0	0
L48513	Homo sapiens paraoxonase 2 (PON2) “mRNA,” complete cds	37		34	I	1.9	0.16	44	I	2.2	0.25	4	NC	0	0
D63475	Human mRNA for KIAA0109 “gene,” complete cds	2343		634	I	1.3	0.16	215	I	1.1	0.03	−1	NC	0	0
U09813	Human mitochondrial ATP synthase subunit “9,” P3 gene “copy,” “mRNA,” nuclear g	1679		502	I	1.3	0.16	276	NC	0	0	578	I	1.3	0.2
D87075	Human mRNA for KIAA0238 “gene,” partial cds	39		−32	D	˜1.9	0.16	0	NC	0	0	−9	NC	0	0
L12723	Human heat shock protein 70 (hsp70) “mRNA,” complete cds	105		−48	MD	1.8	0.16	101	NC	0	0	−20	NC	0	0
L32137	Human germline oligomeric matrix protein (COMP) “mRNA,” complete cds	37	*	−46	D	˜1.8	0.16	−40	NC	0	0	−32	NC	0	0
M32886	Human sorcin CP-22 “mRNA,” complete cds	392		182	I	1.5	0.16	−60	NC	0	0	47	NC	0	0
U57650	Human SH2-containing inositol 5-phosphatase (hSHIP) “mRNA,” complete cds	39		−30	MD	˜2.0	0.16	17	NC	0	0	−13	NC	0	0
Y09392	H. sapiens mRNA for “WSL-LH,” WSL-S1 and WSL-S2 proteins — Also Represents: U	41		−27	D	˜2.0	0.16	1	NC	0	0	−25	NC	0	0
X71428	H. sapiens fus mRNA	738		274	I	1.4	0.15	476	I	1.6	0.38	226	I	1.3	0.11
V00572	Human mRNA encoding phosphoglycerate kinase	3020		724	I	1.2	0.15	−840	D	1.4	0.28	301	NC	0	0
X03689	Human mRNA fragment for elongation factor TU (N-terminus). /gb = X03689 /ntype = R	4846		1000	I	1.2	0.15	665	I	1.1	0.08	202	I	1	0.01
G4073-HT434	Cytosolic Acetoacetyl-Coenzyme A Thiolase	196		107	I	1.5	0.15	38	I	1.2	0.03	60	I	1.3	0.06
U19147	Human GAGE-6 protein “mRNA,” complete cds — “Also Represents: U19145, U19148	500		206	I	1.4	0.15	98	NC	0	0	198	I	1.4	0.14
Z49099	H. sapiens mRNA for spermine synthase	1160		−299	MD	1.3	0.15	60	NC	0	0	−244	D	1.3	0.1
D26362	Human mRNA KIAA0043 “gene,” complete cds	62		−30	D	2	0.15	−6	NC	0	0	−2	NC	0	0
M95178	Human non-muscle alpha-actinin “mRNA,” complete cds	432		−142	D	1.5	0.15	−53	NC	0	0	−77	NC	0	0
X79865	H. sapiens Mrp17 mRNA	885		−247	D	1.4	0.15	−151	NC	0	0	−72	NC	0	0
U54778	Human 14-3-3 epsilon “mRNA,” complete cds	317		145	I	1.5	0.14	254	I	1.8	0.36	155	I	1.5	0.16
M34079	Human immunodeficiency virus fat transactivator binding protein-1 (tbp-1) “mRNA,” c	962		−252	MD	1.4	0.14	−221	D	1.3	0.11	−294	D	1.4	0.19
J04973	Human cytochrome bc-1 complex core protein II “mRNA,” complete cds	139		82	MI	1.6	0.14	72	I	1.5	0.11	37	I	1.3	0.04
		4	*	34	MI	˜1.9	0.14	27	I	˜1.5	0.07	11	NC	0	0
U91316	Human acyl-CoA thioester hydrolase “mRNA,” complete cds	572		217	I	1.4	0.14	31	NC	0	0	340	I	1.6	0.29
U14971	Human ribosomal protein S9 “mRNA,” complete cds	3866		831	I	1.2	0.14	−89	NC	0	0	955	I	1.2	0.18
M21142	guanine nucleotide-binding protein G-s-alpha-3 gene extracted from Human guanine	1344		−330	MD	1.3	0.14	−179	NC	0	0	−207	MD	1.2	0.06
X90840	H. sapiens mRNA for axonal transporter of synaptic vesicles	4	*	33	I	˜1.8	0.14	−5	NC	0	0	23	I	˜1.3	0.04
A28102	Human GABAa receptor alpha-3 subunit. — “Also Similar To: AF002255, L41347, AF0	52		−25	D	1.9	0.14	29	NC	0	0	−12	NC	0	0
G2238-HT232	Nuclear Mitotic Apparatus Protein “1,” Alt. Splice Form 2 — “Also Represents: HG2238	110		−46	MD	1.7	0.14	−7	NC	0	0	−24	NC	0	0
M12125	Human fibroblast muscle-type tropomyosin “mRNA,” complete cds	1087		−282	MD	1.4	0.14	−153	NC	0	0	−144	NC	0	0
M23892	Human 15-lipoxygenase “mRNA,” complete cds — Also Represents: U88317_rna1	23	*	23	I	2	0.14	5	NC	0	0	11	NC	0	0
U63541	Human mRNA expressed in HC/HCC livers and MolT-4 proliferating “cells,” partial se	61	*	45	MI	1.7	0.14	61	NC	0	0	51	NC	0	0
X59543	Human mRNA for M1 subunit of ribonucleotide reductase	200		104	I	1.5	0.14	58	NC	0	0	14	NC	0	0
Z22780	H. sapiens cylicin mRNA	37		−33	D	˜1.8	0.14	−27	NC	0	0	−20	NC	0	0
M63175	Human autocrine motility factor receptor mRNA	58		42	I	1.7	0.13	51	MI	1.9	0.18	30	MI	1.5	0.08
Z24727	H. sapiens tropomyosin isoform “mRNA,” complete CDS	1056		324	I	1.3	0.13	222	MI	1.2	0.07	179	I	1.2	0.05
U79254	Human clone 23693 mRNA sequence	631		−176	D	1.4	0.13	−4	NC	0	0	−323	D	2	0.57
D21852	Human mRNA for KIAA0029 “gene,” partial cds	84		−37	D	1.8	0.13	20	NC	0	0	−6	NC	0	0
D79989	Human mRNA for KIAA0167 “gene,” complete cds	36	*	−31	MD	˜1.8	0.13	−13	NC	0	0	−20	NC	0	0
HG870-HT870	“Golgin,” 165 Kda Polypeptide	39	*	−23	MD	˜1.9	0.13	−14	NC	0	0	−16	NC	0	0
J05032	Human aspartyl-tRNA synthetase alpha-2 subunit “mRNA,” complete cds	52		−25	MD	1.9	0.13	22	NC	0	0	−15	NC	0	0
M21904	Human 4F2 glycosylated heavy chain (4F2HC) antigen gene	409		162	I	1.4	0.13	20	NC	0	0	67	NC	0	0
Y07867	H. sapiens mRNA for “Pirin,” isolate 1	43	*	33	I	1.8	0.13	14	NC	0	0	29	NC	0	0
D14043	Human mRNA for “MGC-24,” complete cds	55		39	MI	1.7	0.12	127	I	3.3	0.92	−22	NC	0	0
U08021	Human nicotinamide N-methyltransferase (NNMT) “mRNA,” complete cds	742		239	I	1.3	0.12	−27	NC	0	0	1261	I	2.7	2.05
U51010	Human nicotinamide N-methyltransferase “gene,” exon 1 and 5′ flanking region. /gb =	401		156	I	1.4	0.12	62	NC	0	0	659	I	2.6	1.42
U09587	Human glycyl-tRNA synthetase mRNA, complete cds.	1573		−346	D	1.3	0.12	−109	NC	0	0	−387	D	1.3	0.15
Z47055	Human partial cDNA “sequence,” farnesyl pyrophosphate synthetase like-4. /gb = Z47	485		182	I	1.4	0.12	70	NC	0	0	207	I	1.4	0.15
M36430	Human transducin beta-1 subunit “mRNA,” 3′ end — Also Represents: X04526	469		−137	D	1.4	0.12	2	NC	0	0	−109	D	1.3	0.08
D50663	Human mRNA for TCTEL1 “gene,” complete cds	389		153	I	1.4	0.12	106	NC	0	0	18	NC	0	0
U01691	Human annexin V (ANX5) “gene,” 5′-untranslated region — “Also Represents: X12454	937		278	I	1.3	0.12	94	NC	0	0	39	NC	0	0
U76764	Human CD97 “mRNA,” complete cds — “Also Represents: X84700, X94630_ma1”	39		−20	MD	˜1.9	0.12	11	NC	0	0	−1	NC	0	0
X52979	SmB protein gene extracted from Human gene for small nuclear ribonucleoproteins S	1575		399	I	1.3	0.12	86	NC	0	0	228	NC	0	0
X56687	H. sapiens mRNA for autoantigen NOR-90 — “Also Represents: X53461, X53390, U65	34	*	−42	MD	˜1.7	0.12	−20	NC	0	0	−32	NC	0	0
X62691	H. sapiens mRNA for ribosomal protein (homologuous to yeast S24)	4511		850	I	1.2	0.12	650	NC	0	0	226	NC	0	0
X12671	hnmp a1 protein gene extracted from Human gene for heterogeneous nuclear ribonu	880		260	I	1.3	0.11	627	I	1.7	0.5	−5	NC	0	0
X78136	H. sapiens hnRNP-E2 mRNA	1073		298	I	1.3	0.11	534	I	1.5	0.3	541	I	1.5	0.3
X86809	H. sapiens mRNA for major astrocytic phosphoprotein PEA-15	986		−235	D	1.3	0.11	−345	MD	1.5	0.26	−257	MD	1.4	0.14
U68105	Human poly(A)-binding protein (PABP) “gene,” promoter region and — Also Represen	996		278	I	1.3	0.11	351	I	1.4	0.16	256	I	1.3	0.1
X85373	H. sapiens mRNA for Sm protein G	613		202	I	1.3	0.11	156	MI	1.3	0.07	82	MI	1.1	0.03
U14969	Human ribosomal protein L28 “mRNA,” complete cds	5725		934	I	1.2	0.11	400	I	1.1	0.03	1680	I	1.3	0.29
L76568	S26 from Homo sapiens excision and cross link repair protein (ERCC4) “gene,” comp	398		149	I	1.4	0.11	45	I	1.1	0.02	101	NC	0	0
M64929	Human protein phosphatase 2A alpha subunit “mRNA,” complete cds	94		−38	MD	1.7	0.11	50	NC	0	0	−43	MD	1.8	0.16
X65867	H. sapiens mRNA for adenylosuccinate lyase	634		202	I	1.3	0.11	−127	NC	0	0	228	I	1.4	0.13
U47101	Human NitU-like protein (hNitU) “mRNA,” partial cds	112		61	I	1.5	0.11	8	NC	0	0	53	MI	1.5	0.09
		720		227	I	1.3	0.11	−94	NC	0	0	16	NC	0	0
		475		166	I	1.3	0.11	−14	NC	0	0	131	NC	0	0
D13640	Human mRNA for KIAA0015 “gene,” complete cds	261		−85	D	1.5	0.11	−103	NC	0	0	−64	NC	0	0
D14827	Human mRNA for Tax helper protein “1,” complete cds	32	*	−50	MD	˜1.6	0.11	−23	NC	0	0	−28	NC	0	0
D31846	Human gene for aquaporin-2 water “channel,” “exon1-4,” complete cds	202		−70	MD	1.5	0.11	−58	NC	0	0	−79	NC	0	0
D86974	Human mRNA for KIAA0220 “gene,” partial cds	168		−58	MD	1.5	0.11	32	NC	0	0	−34	NC	0	0
L28010	Homo sapiens HnRNP F protein “mRNA,” complete cds	196		−67	D	1.5	0.11	76	NC	0	0	46	NC	0	0
L38951	Homo sapiens importin beta subunit “mRNA,” complete cds	177		−61	D	1.5	0.11	115	NC	0	0	−37	NC	0	0
M19989	Human platelet-derived growth factor (PDGFA) A chain gene	32	*	25	MI	1.8	0.11	18	NC	0	0	11	NC	0	0
M33336	Human cAMP-dependent protein kinase type I-alpha subunit (PRKAR1A) “mRNA,” c	93		−37	D	1.7	0.11	76	NC	0	0	−7	NC	0	0
U24166	Human EB1 “mRNA,” complete cds	230		101	MI	1.4	0.11	91	NC	0	0	50	NC	0	0
X93920	H. sapiens mRNA for protein-tyrosine-phosphatase (tissue type: foreskin)	30	*	24	I	1.8	0.11	−7	NC	0	0	36	NC	0	0
X95648	H. sapiens mRNA for elF-2B alpha subunit	90		48	I	1.5	0.1	78	I	1.9	0.22	106	MI	2.2	0.38
D79995	Human mRNA for KIAA0173 “gene,” complete cds	37		−18	D	˜1.9	0.1	−23	D	˜1.9	0.12	−12	NC	0	0
D78132	Human mRNA for Ras homologue enriched in brain (RHEB) “gene,” Ras-related GT	524		171	MI	1.3	0.1	168	I	1.3	0.1	7	NC	0	0
X99584	H. sapiens mRNA for SMT3A protein	100	*	54	I	1.5	0.1	45	I	1.5	0.08	95	I	2	0.28
M64595	Human small G protein (Gx) “mRNA,” 3′ end	200		−65	MD	1.5	0.1	−59	MD	1.4	0.08	−28	NC	0	0
U48959	Human myosin light chain kinase (MLCK) “mRNA,” complete cds	127		−46	D	1.6	0.1	−43	NC	0	0	−71	D	2.3	0.34
D32050	Human mRNA for alanyl-tRNA “synthetase,” complete cds	396		−109	D	1.4	0.1	−24	NC	0	0	−20	NC	0	0
D89077	Human mRNA for Src-like adapter “protein,” complete cds	33	*	−36	D	˜1.6	0.1	−22	NC	0	0	−11	NC	0	0
U18291	Human CDC16Hs “mRNA,” complete cds	46		31	MI	1.7	0.1	26	NC	0	0	17	NC	0	0
U89942	Human lysyl oxidase-related protein (WS9-14) “mRNA,” complete cds	618		−153	D	1.3	0.1	26	NC	0	0	−118	NC	0	0
X72964	H. sapiens mRNA for caltractin	178		79	MI	1.4	0.1	4	NC	0	0	15	NC	0	0
X84709	H. sapiens mRNA for mediator of receptor-induced toxicity	295		115	I	1.4	0.1	−48	NC	0	0	87	NC	0	0
Z24724	H. sapiens polyA site DNA	33		−27	D	˜1.7	0.09	80	I	3.4	0.77	−17	NC	0	0
U20998	Homo sapiens signal recognition particle subunit 9 (SRP9) “mRNA,” complete cds	105		52	I	1.5	0.09	172	I	2.6	0.72	32	I	1.3	0.04
X61615	H. sapiens mRNA for leukemia inhibitory factor (LIF) receptor	80		−30	D	1.6	0.09	−51	D	2.7	0.42	−24	NC	0	0
M29277	Human isolate JuSo MUC18 glycoprotein mRNA (3′ “variant),” complete cds — “Also R	320		−91	MD	1.4	0.09	−160	MD	2	0.38	−75	NC	0	0
U07919	Human aldehyde dehydrogenase 6 “mRNA,” complete cds	8	*	25	I	˜1.6	0.09	42	I	˜2.5	0.31	6	NC	0	0
J05448	Human RNA polymerase subunit hRPB “33,” mRNA	115		55	MI	1.5	0.09	57	NC	0	0	116	I	2	0.32
D14811	Human mRNA for KIAA0110 “gene,” complete cds	99		−35	MD	1.5	0.09	−26	NC	0	0	−50	MD	2	0.21
U14972	Human ribosomal protein S10 “mRNA,” complete cds	3771		617	I	1.2	0.09	−171	NC	0	0	964	I	1.3	0.18
M20471	Human brain-type clathrin light-chain a “mRNA,” complete cds	793		205	MI	1.3	0.09	91	NC	0	0	314	MI	1.4	0.17
X90392	H. sapiens mRNA for DNase X gene	94		−34	D	1.6	0.09	−4	NC	0	0	−37	D	1.6	0.11
X91788	H. sapiens mRNA for lcin protein	279		100	I	1.4	0.09	0	NC	0	0	83	I	1.3	0.06
X79200	H. sapiens mRNA for “SYT-SSX,” synovial sarcoma translocation junction. /gb = X7920	423		−107	MD	1.3	0.09	−54	NC	0	0	−80	D	1.2	0.05
AC002115	F25451_2 gene extracted from Human DNA from overlapping chromosome 19 cosm	1130		276	I	1.2	0.09	75	NC	0	0	38	NC	0	0
		5	*	28	MI	˜1.6	0.09	7	NC	0	0	18	NC	0	0
D13146	2′,3′-cyclic-nucleotide 3′-phosphodiesterase gene extracted from Human “2′,3′-cyclic-	510		158	I	1.3	0.09	67	NC	0	0	55	NC	0	0
G1728-HT173	Non-Specific Cross Reacting Antigen “(Gb:D90277),” Alt. Splice Form 2 — “Also Repre	263		−77	D	1.4	0.09	−49	NC	0	0	1	NC	0	0
HG846-HT846	Cyclophilin-Related Protein	34	*	−22	D	˜1.7	0.09	−19	NC	0	0	−19	NC	0	0
L31801	Homo sapiens monocarboxylate transporter 1 (SLC16A1) “mRNA,” complete cds	86		−32	D	1.6	0.09	19	NC	0	0	−6	NC	0	0
M13450	Human esterase D “mRNA,” 3′end	115		54	I	1.5	0.09	34	NC	0	0	8	NC	0	0
M35198	Human integrin B-6 “mRNA,” complete cds	−4	*	36	I	˜1.6	0.09	20	I	˜1.0	0	2	NC	0	0
M97388	Human TATA binding protein-associated phosphoprotein (DR1) “mRNA,” complete c	84		−31	MD	1.6	0.09	20	NC	0	0	−33	NC	0	0
X64269	H. sapiens gene MITF1 for mitochondrial transcription factor 1	99	*	−35	MD	1.5	0.08	−110	D	˜4.9	1.54	−11	NC	0	0
U44378	Human homozygous deletion target in pancreatic carcinoma (DPC4) “mRNA,” compl	15	*	19	I	˜1.7	0.08	62	I	˜3.8	0.81	1	NC	0	0
U47077	Human DNA-dependent protein kinase catalytic subunit (DNA-PKcs) “mRNA,” compl	52		−21	D	1.7	0.08	71	I	2.4	0.37	1	NC	0	0
M23613	Human nucleophosmin “mRNA,” complete cds	1941		365	I	1.2	0.08	749	I	1.4	0.26	−542	NC	0	0
D12775	Human mRNA for erythrocyte-specific AMP “deaminase,” complete cds — Also Repre	21	*	15	MI	1.7	0.08	20	I	2	0.13	18	NC	0	0
D50840	Human mRNA for ceramide “glucosyltransferase,” complete cds	361		−94	D	1.4	0.08	111	MI	1.3	0.08	−109	NC	0	0
M16342	Human nuclear ribonucleoprotein particle (hnRNP) C protein “mRNA,” complete cds	788		194	I	1.2	0.08	170	I	1.2	0.06	−7	NC	0	0
U38846	Human stimulator of TAR RNA binding (SRB) “mRNA,” complete cds	1087		243	I	1.2	0.08	160	I	1.1	0.04	168	I	1.2	0.04
Y00264	Human mRNA for amyloid A4 precursor of Alzheimer's disease	189		70	I	1.4	0.08	43	I	1.2	0.03	60	I	1.3	0.06
D10511	Human gene for mitochondrial acetoacetyl-CoA thiolase	115		−38	D	1.5	0.08	20	NC	0	0	−62	D	2.1	0.28
X96381	H. sapiens erm “gene,” exon “2,3,4,5” (and joined CDS)	163		65	I	1.4	0.08	−2	NC	0	0	82	I	1.5	0.12
U58682	Human ribosomal protein S28 “mRNA,” complete cds	2145		375	I	1.2	0.08	145	NC	0	0	382	I	1.2	0.08
D86966	Human mRNA for KIAA0211 “gene,” complete cds	107		−37	D	1.5	0.08	−31	NC	0	0	−16	NC	0	0
D87017	C7 segment gene extracted from Human (lambda) DNA for immunoglobin light chain	238	*	87	I	1.4	0.08	44	NC	0	0	59	NC	0	0
M86752	Human transformation-sensitive protein (IEF SSP 3521) “mRNA,” complete cds	827		−171	D	1.3	0.08	−118	NC	0	0	−152	NC	0	0
U14394	Human tissue inhibitor of metalloproteinases-3 “mRNA,” complete cds	60	*	32	I	1.5	0.08	30	NC	0	0	27	NC	0	0
X75861	H. sapiens TEGT gene	1079		−214	D	1.2	0.08	2	NC	0	0	−141	NC	0	0
X83218	H. sapiens mRNA for ATP synthase	557		155	I	1.3	0.08	−52	NC	0	0	73	NC	0	0
X89750	H. sapiens mRNA for TGIF protein	146		59	I	1.4	0.08	−12	NC	0	0	77	NC	0	0
Y00757	Human mRNA for polypeptide 7B2	92		45	I	1.5	0.08	18	NC	0	0	−18	NC	0	0
		−4	*	33	MI	˜1.5	0.07	117	I	˜5.6	1.86	21	NC	0	0
		14	*	18	MI	˜1.6	0.07	93	MI	˜5.4	1.56	16	NC	0	0
D86956	Human mRNA for KIAA0201 “gene,” complete cds	34		−14	D	˜1.7	0.07	97	I	3.9	1.04	−8	NC	0	0
U31383	Human G protein gamma-10 subunit “mRNA,” complete cds	44		24	MI	1.5	0.07	110	I	3.5	0.96	19	NC	0	0
L10284	Homo sapiens integral membrane “protein,” “calnexin,” (IP90) “mRNA,” complete cds	296		−73	MD	1.3	0.07	197	I	1.7	0.26	−15	NC	0	0
M58460	Human 75-kD autoantigen (PM-Sc1) “mRNA,” complete cds	8	*	22	I	˜1.5	0.07	29	I	˜1.8	0.13	5	NC	0	0
U44103	Human small GTP binding protein Rab9 “mRNA,” complete cds.	16		16	I	˜1.6	0.07	19	I	˜1.7	0.09	−1	NC	0	0
Z22534	H. sapiens ALK-2 mRNA	48		26	I	1.5	0.07	20	MI	1.4	0.05	26	NC	0	0
M81601	Human transcription elongation factor (Sil) “mRNA,” complete cds	206		−57	MD	1.4	0.07	60	NC	0	0	−65	D	1.5	0.09
		211		74	MI	1.3	0.07	−59	NC	0	0	66	NC	0	0
D14660	Human mRNA for KIAA0104 “gene,” complete cds	49		−19	D	1.6	0.07	3	NC	0	0	−18	NC	0	0
D28588	Human mRNA for KIAA0048 “gene,” complete cds	56		−20	D	1.6	0.07	−3	NC	0	0	−7	NC	0	0
G2147-HT221	Mucin “3,” intestinal (Gb:M55405)	454		117	MD	1.3	0.07	4	NC	0	0	50	NC	0	0
G3111-HT328	Autoantigen (Gb:S67069)	2697		425	I	1.2	0.07	178	NC	0	0	−340	NC	0	0
HG33-HT33	Ribosomal Protein S4, X-Linked	1777		322	MI	1.2	0.07	296	NC	0	0	268	NC	0	0
L00058	Human (GH) germline c-myc “proto-oncogene,” 5′ flank	94		−32	D	1.5	0.07	7	NC	0	0	18	NC	0	0
U65928	Human Jun activation domain binding protein “mRNA,” complete cds	173		61	I	1.4	0.07	−11	NC	0	0	−49	NC	0	0
X04327	Human erythrocyte “2,3-bisphosphoglycerate” mutase mRNA EC 2.7.5.4	13	*	19	MI	˜1.6	0.07	28	NC	0	0	3	NC	0	0
X53416	Human mRNA for actin-binding protein (filamin) (ABP-280)	1236		−210	D	1.2	0.07	−222	NC	0	0	54	NC	0	0
D31885	Human mRNA for KIAA0069 “gene,” partial cds	214		69	MI	1.3	0.06	164	I	1.8	0.28	−20	NC	0	0
Y00971	Human mRNA for phosphoriobosyl pyrophosphate synthetase subunit II (EC 2.7.6.1)	82		33	MI	1.4	0.06	58	I	1.7	0.15	11	NC	0	0
J04111	Human c-jun proto oncogene “(JUN),” complete “cds,” clone hCJ-1	10	*	19	I	˜1.5	0.06	26	I	˜1.8	0.12	11	NC	0	0
M37583	Human histone (H2A.Z) “mRNA,” complete cds	1398		233	MI	1.2	0.06	339	I	1.2	0.1	40	NC	0	0
Z21507	H. sapiens EF-1delta gene encoding human elongation factor-1-delta	1261		228	I	1.2	0.06	215	I	1.2	0.06	576	I	1.5	0.28
X92720	H. sapiens mRNA for phosphoenolpyruvate carboxykinase	246		74	MI	1.3	0.06	74	I	1.3	0.06	146	I	1.6	0.19
X61587	H. sapiens rhoG mRNA for GTPase	314		84	MI	1.3	0.06	48	I	1.2	0.02	164	I	1.5	0.17
X90858	H. sapiens mRNA for uridine phosphorylase	216		66	I	1.3	0.06	−16	NC	0	0	164	I	1.8	0.27
X85372	H. sapiens mRNA for Sm protein F	645		134	I	1.2	0.06	16	NC	0	0	61	I	1.1	0.02
L19783	Human GPI-H “mRNA,” complete cds	10	*	21	I	˜1.5	0.06	16	NC	0	0	12	I	˜1.1	0.01
AB000468	Human mRNA for zinc finger “protein,” clone “RES4-26,” complete cds	182		−47	D	1.3	0.06	−57	NC	0	0	−23	NC	0	0
D17400	Human mRNA for 6-pyruvoyl-tetrahydropterin “synthase,” complete cds	146		−42	D	1.4	0.06	23	NC	0	0	−47	NC	0	0
D83767	Human clone N9 Rep-8 “mRNA,” complete cds	32		−14	D	˜1.6	0.06	−7	NC	0	0	−19	NC	0	0
G2855-HT299	Heat Shock “Protein,” 70 Kda (Gb:Y00371)	1631		255	I	1.2	0.06	−16	NC	0	0	−196	NC	0	0
L11669	Human tetracycline transporter-like protein “mRNA,” complete cds	135		−39	MD	1.4	0.06	−21	NC	0	0	3	NC	0	0
M57703	Human melanin concentrating hormone (MCH) “mRNA,” complete cds — Also Repres	7	*	23	I	˜1.5	0.06	6	NC	0	0	4	NC	0	0
S80562	acidic calponin “[human,” “kidney,” “mRNA,” 1607 nt]	184		61	I	1.3	0.06	91	NC	0	0	21	NC	0	0
U07418	Human DNA mismatch repair (hmlh1) “mRNA,” complete cds	129		45	I	1.3	0.06	72	NC	0	0	43	NC	0	0
U28014	Human cysteine protease (ICErel-II) “mRNA,” complete cds	105		40	MI	1.4	0.06	62	NC	0	0	15	NC	0	0
U59289	Human H-cadherin “mRNA,” complete cds	23	*	14	MI	1.6	0.06	11	NC	0	0	10	NC	0	0
X02317	Human mRNA for Cu/Zn superoxide dismutase (SOD)	1055		206	I	1.2	0.06	−48	NC	0	0	−20	NC	0	0
X74104	H. sapiens mRNA for TRAP beta subunit	1150		208	I	1.2	0.06	−87	NC	0	0	75	NC	0	0
X82153	H. sapiens mRNA for cathepsin O	31	*	−18	MD	˜1.5	0.06	3	NC	0	0	−7	NC	0	0
X94754	H. sapiens mRNA for yeast methionyl-tRNA synthetase homologue	892		−159	D	1.2	0.06	81	NC	0	0	81	NC	0	0
Z48570	H. sapiens Sp17 gene	13	*	19	I	˜1.6	0.06	−8	NC	0	0	9	NC	0	0
D90070	Human ATL-derived PMA-responsive (APR) peptide mRNA — Also Represents: M572	4	*	23	I	˜1.4	0.05	65	I	˜3.5	0.71	38	I	˜2.1	0.21
U83115	Human non-lens beta gamma-crystallin like protein (AIM1) “mRNA,” partial cds	66		−20	MD	1.4	0.05	49	I	1.7	0.15	−17	NC	0	0
U25975	Human serine kinase (hPAK65) “mRNA,” partial cds	53		−17	MD	1.5	0.05	30	MI	1.6	0.08	−12	NC	0	0
M16652	Human pancreatic elastase IIA “mRNA,” complete cds — Also Represents: M16653	483		−93	MD	1.2	0.05	−111	D	1.3	0.07	−66	NC	0	0
X68242	H. sapiens mRNA for Hin-1	30		−17	D	˜1.5	0.05	−20	MD	˜1.5	0.06	−21	D	˜1.5	0.06
AB006781	Homo sapiens mRNA for “galectin-4,” complete cds. /gb = AB006781 /ntype = RNA — Al	29		−19	D	˜1.5	0.05	−25	MD	˜1.5	0.06	−18	D	˜1.5	0.05
D87073	Human mRNA for KIAA0236 “gene,” complete cds	28	*	−27	D	˜1.4	0.05	−22	D	˜1.4	0.05	−18	NC	0	0
U47105	Human H105e3 “mRNA,” complete cds	148		−38	D	1.3	0.05	−29	D	1.2	0.03	−47	D	1.5	0.08
Z18948	H. sapiens mRNA for S100E calcium binding protein	38	*	18	MI	1.5	0.05	−68	NC	0	0	70	I	2.9	0.53
U50939	Human amyloid precursor protein-binding protein 1 “mRNA,” complete cds	55		−18	D	1.5	0.05	−1	NC	0	0	−34	D	2.6	0.3
M35296	Human tyrosine kinase arg gene mRNA	79		−23	D	1.4	0.05	−10	NC	0	0	−42	D	2.1	0.23
X13967	Human mRNA for leukaemia inhibitory factor (LIF/HILDA)	181		51	I	1.3	0.05	−3	NC	0	0	102	MI	1.6	0.15
U94855	Human translation initiation factor 3 47 kDa subunit “mRNA,” complete cds.	1571		224	I	1.1	0.05	−137	NC	0	0	351	I	1.2	0.1
D13748	Human mRNA for eukaryotic initiation factor 4AI	2721		355	I	1.1	0.05	233	NC	0	0	448	I	1.2	0.08
J00117	Human chorionic gonadotropin (hcg) beta subunit “mRNA,” complete cds	232		−53	D	1.3	0.05	−59	NC	0	0	−38	MD	1.2	0.03
X87838	H. sapiens mRNA for beta-catenin	429		97	I	1.2	0.05	99	NC	0	0	72	I	1.2	0.03
D25216	Human mRNA for KIAA0014 “gene,” complete cds	381		−76	MD	1.2	0.05	−112	NC	0	0	−116	NC	0	0
D61380	Human mRNA for DJ-1 “protein,” complete cds	1209		193	I	1.2	0.05	−25	NC	0	0	−29	NC	0	0
G1112-HT111	Ras-Like Protein Tc4	1287		199	I	1.2	0.05	112	NC	0	0	157	NC	0	0
J02683	Human ADP/ATP carrier protein “mRNA,” complete cds — Also Represents: M57424 —	1731		250	I	1.1	0.05	93	NC	0	0	128	NC	0	0
J03040	Human SPARC/osteonectin “mRNA,” complete cds	1037		−151	D	1.2	0.05	228	NC	0	0	17	NC	0	0
L00352	Human low density lipoprotein receptor gene	143		−36	D	1.3	0.05	19	NC	0	0	16	NC	0	0
M16447	Human dihydropteridine reductase (hDHPR) “mRNA,” complete cds	74		−22	D	1.4	0.05	−23	NC	0	0	−16	NC	0	0
U57877	Human integral membrane protein CII-3 “mRNA,” nuclear gene encoding mitochondr	140		46	MI	1.3	0.05	−1	NC	0	0	40	NC	0	0
U78027	L44L gene (L44-like ribosomal protein) extracted from Human Bruton's tyrosine kinas	2179		290	I	1.1	0.05	196	NC	0	0	−231	NC	0	0
U90549	Human non-histone chromosomal protein (NHC) “mRNA,” complete cds	277		73	MI	1.3	0.05	−84	NC	0	0	−14	NC	0	0
X81788	H. sapiens DS-1 mRNA	192		52	MI	1.3	0.05	9	NC	0	0	15	NC	0	0
Y07596	H. sapiens mRNA for GP18 protein	−8	*	36	I	˜1.4	0.05	27	I	˜1.0	0	26	NC	0	0
Y11897	H. sapiens Brx gene 3′UTR. /gb = Y11897 /ntype = RNA	65	*	26	I	1.4	0.05	−29	NC	0	0	15	NC	0	0
U82311	Human unknown protein “mRNA,” partial cds. /gb = U82311 /ntype = RNA	231		−44	MD	1.2	0.04	−165	MD	3.5	1.17	−31	NC	0	0
U49837	Human LIM protein MLP “mRNA,” complete cds	−16	*	42	I	˜1.3	0.04	66	I	˜2.5	0.4	40	I	˜1.2	0.03
U07802	Human Tis11d “gene,” complete cds	10	*	18	I	˜1.4	0.04	29	I	˜2.0	0.15	20	I	˜1.5	0.06
S77576	ERV9 reverse transcriptase homolog (clone RT18) “[human,” multiple “sclerosis,” bra	41	*	−12	MD	1.4	0.04	−21	D	˜2.1	0.15	−7	MD	1.2	0.01
U78556	Human cisplatin resistance associated alpha protein (hCRA alpha) “mRNA,” complet	215		50	I	1.2	0.04	89	I	1.4	0.1	−20	NC	0	0
M26708	Human prothymosin alpha mRNA “(ProT-alpha),” complete cds — “Also Represents: N	2208		235	I	1.1	0.04	400	I	1.2	0.08	−260	NC	0	0
M62402	Human insulin-like growth factor binding protein 6 (IGFBP6) “mRNA,” complete cds	259		−51	D	1.2	0.04	−65	D	1.3	0.07	−53	D	1.3	0.04
S78187	CDC25Hu2 = cdc25+ homolog “[human,” “mRNA,” 3118 nt]	291		−58	MD	1.3	0.04	−54	D	1.2	0.04	7	NC	0	0
X66785	H. sapiens mRNA for transacylase (DBT)	101		−24	D	1.3	0.04	−23	D	1.3	0.03	−46	D	1.8	0.17
M27543	Human guanine nucleotide-binding protein (GI) alpha subunit “mRNA,” complete cds	−15	*	41	I	˜1.3	0.04	40	I	˜1.2	0.03	24	I	˜1.0	0
M63483	Human major nuclear matrix protein mRNA	70		−20	D	1.4	0.04	104	NC	0	0	−28	D	1.7	0.1
D14657	Human mRNA for KIAA0101 “gene,” complete cds	248		−48	D	1.2	0.04	6	D	1	0	−74	D	1.4	0.09
U32944	Human cytoplasmic dynein light chain 1 (hdlc1) “mRNA,” complete cds	731		119	MI	1.2	0.04	131	NC	0	0	198	I	1.3	0.09
D83785	Human mRNA for KIAA0200 “gene,” complete cds	70		−20	MD	1.4	0.04	2	NC	0	0	−23	MD	1.5	0.06
M61199	Human cleavage signal 1 protein “mRNA,” complete cds	27		−27	D	˜1.3	0.04	11	NC	0	0	−34	D	˜1.3	0.05
U51004	Human putative protein kinase C inhibitor (PKCI-1) “mRNA,” complete cds	1056		158	I	1.1	0.04	−135	NC	0	0	187	I	1.2	0.05
U60060	Human FEZ1 “mRNA,” complete cds	27	*	−24	D	˜1.3	0.04	−19	NC	0	0	−33	D	˜1.3	0.05
X70218	H. sapiens mRNA for protein phosphatase X	812		135	MI	1.2	0.04	−7	NC	0	0	137	I	1.2	0.04
D25547	Human mRNA for PIMT isozyme “I,” complete cds	100		30	MI	1.3	0.04	−51	NC	0	0	24	MI	1.2	0.03
X67698	H. sapiens tissue specific mRNA	454		81	MI	1.2	0.04	−156	NC	0	0	57	I	1.1	0.02
		−4	*	30	I	˜1.3	0.04	6	NC	0	0	3	NC	0	0
D10495	Human mRNA for protein kinase C delta-type	108		−27	D	1.3	0.04	−18	NC	0	0	3	NC	0	0
D87461	Human mRNA for KIAA0271 “gene,” complete cds	17	*	12	I	˜1.4	0.04	−16	NC	0	0	−7	NC	0	0
K02405	Human MHC class II HLA-DC-3-beta gene “(DR3,3)”	94		−22	MD	1.3	0.04	−17	NC	0	0	−24	NC	0	0
M98343	Homo sapiens amplaxin (EMS1) “mRNA,” complete cds	32	*	−10	I	1.5	0.04	−57	NC	0	0	−53	NC	0	0
X13482	Human mRNA for U2 snRNP-specific A′ protein	263		63	I	1.2	0.04	8	NC	0	0	10	NC	0	0
X64229	H. sapiens dek mRNA	28		−17	D	˜1.4	0.04	24	NC	0	0	−10	NC	0	0
X76770	H. sapiens PAP mRNA	137		−30	MD	1.3	0.04	−40	NC	0	0	−8	NC	0	0
Z46629	Homo sapiens SOX9 mRNA	82	*	21	I	1.3	0.03	23	I	1.3	0.03	15	I	1.2	0.02
L19437	Human transaidolase mRNA containing transposable “element,” complete cds	365		−55	D	1.2	0.03	−32	D	1.1	0.01	−24	NC	0	0
Z70219	H. sapiens mRNA for 5′UTR for unknown protein (clone ICRFp507C0696). /gb = Z702	33	*	12	MI	1.4	0.03	−5	NC	0	0	24	MI	1.7	0.1
U61234	Human tubulin-folding cofactor C “mRNA,” complete cds	67		19	I	1.3	0.03	−3	NC	0	0	32	MI	1.5	0.07
L07541	Human replication factor “C,” 38-kDa subunit “mRNA,” complete cds	26		−19	D	˜1.3	0.03	−2	NC	0	0	−16	D	˜1.3	0.03
D49354	Human mRNA for enhancer protein in hsp70 “gene,” partial cds — “Also Represents:	25		−27	D	˜1.2	0.03	−3	NC	0	0	−14	NC	0	0
L11708	Human 17 beta hydroxysteroid dehydrogenase type 2 “mRNA,” complete cds	25	*	−23	D	˜1.3	0.03	−7	NC	0	0	−23	NC	0	0
L19527	Homo sapiens ribosomal protein L27 (RPL27) “mRNA,” complete cds	3541		286	I	1.1	0.03	−154	NC	0	0	246	NC	0	0
M25756	Human secretogranin II “gene,” complete cds	26	*	−22	D	˜1.3	0.03	13	NC	0	0	−19	NC	0	0
M26880	Human ublquitin “mRNA,” complete cds	997		128	MI	1.1	0.03	110	NC	0	0	−63	NC	0	0
S54005	thymosin beta-10 “[human,” metastatic melanoma cell “line,” “mRNA,” 453 nl] — Also	2124		194	MI	1.1	0.03	−8	NC	0	0	−98	NC	0	0
U07857	Human 18 kDa Alu RNA binding protein “mRNA,” complete cds	346		57	MI	1.2	0.03	46	NC	0	0	−35	NC	0	0
U16861	Human inward rectifying potassium channel “mRNA,” complete cds	26	*	−27	D	˜1.3	0.03	−25	NC	0	0	−26	NC	0	0
U25165	Human fragile X mental retardation protein 1 homolog FXR1 “mRNA,” complete cds	33		−10	MD	1.4	0.03	47	NC	0	0	−4	NC	0	0
U85767	Human myeloid progenitor inhibitory factor-1 MPIF-1 “mRNA,” complete cds	−17	*	41	I	˜1.2	0.03	79	NC	0	0	35	NC	0	0
X72841	H. sapiens IEF 7442 mRNA	292		57	I	1.2	0.03	−11	NC	0	0	6	NC	0	0
X75308	H. sapiens mRNA for collagenase 3	26	*	−18	MD	˜1.3	0.03	−20	NC	0	0	−18	NC	0	0
Z80787	H. sapiens H4/j gene	26	*	−20	MD	˜1.3	0.03	−20	NC	0	0	−7	NC	0	0
X83416	H. sapiens PrP “gene,” exon 2 — “Also Represents: D00015_ma1, D00015”	326		41	MI	1.1	0.02	155	I	1.5	0.15	−65	NC	0	0
D78577	Human DNA for 14-3-3 protein eta chain — Also Represents: L20422	635		60	MI	1.1	0.02	173	I	1.3	0.08	−55	NC	0	0
L00389	Human cytochrome P-450 4 gene	113	*	−19	MI	1.2	0.02	36	MI	1.3	0.05	−26	NC	0	0
X98248	H. sapiens mRNA for sortllin	259		34	I	1.1	0.02	−17	NC	0	0	211	I	1.8	0.34
Z28407	H. sapiens mRNA for ribosomal protein L8	7077		303	I	1	0.02	264	NC	0	0	1496	I	1.2	0.19
S82471	SSX3 = Kruppet-associated box containing SSX gene “[human,” “testis,” mRNA “Parti	128		−18	MD	1.2	0.02	33	NC	0	0	−41	D	1.5	0.08
D83781	Human mRNA for KIAA0197 “gene,” partial cds	7	*	18	I	˜1.3	0.02	15	NC	0	0	19	I	˜1.3	0.03
U49869	Human ublquitin “gene,” complete cds	5047		241	I	1	0.02	−1241	NC	0	0	205	I	1	0.01
D31888	Human mRNA for KIAA0071 “gene,” partial cds	24		−25	D	˜1.2	0.02	13	NC	0	0	−4	NC	0	0
G1862-HT189	Calmodulin Type I	229		−31	D	1.2	0.02	97	NC	0	0	−45	NC	0	0
G3187-HT336	Tyrosine Phosphatase “1,” “Non-Receptor,” Alt. Splice 3 — “Also Represents: HG3187	23	*	−30	MD	˜1.1	0.02	−18	NC	0	0	−15	NC	0	0
L42379	Homo sapiens bone-derived growth factor (BPGF-1) “mRNA,” complete cds	242		−30	MD	1.1	0.02	39	NC	0	0	122	NC	0	0
M10277	Human cytoplasmic beta-actin “gene,” complete cds — Also Represents: HSAC07/X0	5913		284	I	1	0.02	−300	NC	0	0	19	NC	0	0
M14199	Human laminin receptor (2H5 epitope) “mRNA,” 5′ end — “Also Represents: HG1773-	7808		351	MI	1	0.02	−1190	NC	0	0	−842	NC	0	0
M14328	Human alpha enolase “mRNA,” complete cds — Also Represents: M55914	4800		317	I	1.1	0.02	−278	NC	0	0	78	NC	0	0
M81637	Human grancalcin “mRNA,” complete cds	−9	*	32	I	˜1.2	0.02	2	NC	0	0	14	NC	0	0
M89955	Human 5-HT1D-type serotonin receptor “gene,” complete cds	−17	*	40	MI	˜1.1	0.02	8	NC	0	0	19	NC	0	0
U10868	Human aldehyde dehydrogenase ALDH7 “mRNA,” complete cds	72	*	16	MI	1.2	0.02	5	NC	0	0	2	NC	0	0
U14518	Human centromere protein-A (CENP-A) “mRNA,” complete cds	63		−12	D	1.2	0.02	26	NC	0	0	5	NC	0	0
U19261	Human Epstein-Barr virus-induced protein “mRNA,” complete cds	46		12	D	1.3	0.02	−26	NC	0	0	2	NC	0	0
U25433	Human protein associated with tumorigenic conversion (CATR1.3) “mRNA,” complete	0	*	24	I	˜1.2	0.02	6	NC	0	0	10	NC	0	0
U40992	Human heat shock protein hsp40 homolog “mRNA,” complete cds	−8	*	31	I	˜1.1	0.02	30	NC	0	0	7	NC	0	0
U41813	Human class I homeoprotein (HOXA9) “mRNA,” partial cds	15	*	10	MI	˜1.2	0.02	10	NC	0	0	−1	NC	0	0
U83598	Human death domain receptor 3 soluble form (DDR3) “mRNA,” partial cds — Also Rep	89		−16	MD	1.2	0.02	−11	NC	0	0	21	NC	0	0
X52009	H. sapiens alpha-1 strychnine binding subunit of inhibitory glycine receptor mRNA. — A	25	*	−12	D	˜1.3	0.02	−20	NC	0	0	−20	NC	0	0
U25789	Human ribosomal protein L21 “mRNA,” complete cds	2072		67	MI	1	0.01	−655	D	1.5	0.3	−436	NC	0	0
D42087	Human mRNA for KIAA0118 “gene,” partial cds	55		11	I	1.2	0.01	48	I	1.9	0.17	−7	NC	0	0
U02081	Human guanine nucleotide regulatory protein (NET1) “mRNA,” complete cds	11	*	12	I	˜1.1	0.01	27	I	˜1.9	0.14	10	NC	0	0
L10838	Homo sapiens SR protein “family,” pre-mRNA splicing factor (SRp20) “mRNA,” comp	531		−29	MD	1.1	0.01	160	I	1.3	0.09	−48	NC	0	0
U50360	Human “calcium,” calmodulin-dependent protein kinase II gamma “mRNA,” partial cd	−15	*	36	I	˜1.1	0.01	44	I	˜1.5	0.08	13	NC	0	0
Z11559	H. sapiens mRNA for iron regulatory factor	109		14	I	1.1	0.01	27	NC	0	0	85	I	1.8	0.21
X69978	H. sapiens mRNA for XP-G factor	47		5	D	1.1	0.01	14	NC	0	0	7	D	1.1	0.01
		−7	*	28	I	˜1.1	0.01	23	MI	˜1.0	0	26	MI	˜1.0	0
D21063	Human mRNA for KIAA0030 “gene,” partial cds	382		−33	D	1.1	0.01	70	NC	0	0	89	NC	0	0
G3254-HT343	Phosphalidylinositol 3-Kinase “P110,” Beta isoform	23	*	−17	D	˜1.1	0.01	7	NC	0	0	−8	NC	0	0
G3925-HT419	Surfactant Protein Sp-A2 Delta — “Also Represents: M30838, M68519_ma1, HG3928-	−2	*	24	I	˜1.1	0.01	20	MI	˜1.0	0	10	NC	0	0
M29610	Human glycophorin E “mRNA,” complete cds — Also Represents: J02982	22		−22	D	˜1.1	0.01	−6	NC	0	0	−19	NC	0	0
M69238	Human aryl hydrocarbon receptor nuclear translocator (ARNT) “mRNA,” complete cd	−26	*	47	MI	˜1.1	0.01	36	NC	0	0	25	NC	0	0
U38980	Human PMS2 related (hPMSR6) “mRNA,” complete cds	152	*	−20	MD	1.1	0.01	31	NC	0	0	16	NC	0	0
U58334	Human “Bcl2,” p53 binding protein Bbp/53BP2 (BBP/53BP2) “mRNA,” complete cds	49		8	D	1.2	0.01	44	NC	0	0	17	NC	0	0
U82467	Human tub homolog (TUB) “mRNA,” complete cds.	21	*	−39	MD	˜1.1	0.01	−25	NC	0	0	−19	NC	0	0
X14767	Human mRNA for GABA-A “receptor,” beta 1 subunit	24	*	5	I	1.2	0.01	18	NC	0	0	−11	NC	0	0
X53777	Human L23 mRNA for putative ribosomal protein	4719		210	I	1	0.01	−632	NC	0	0	−133	NC	0	0
X79201	H. sapiens mRNA for SYT	24		−8	D	˜1.2	0.01	4	NC	0	0	−2	MD	1.1	0
Y00787	Human mRNA for MDNCF (monocyte-derived neutrophil chemotactic factor) — “Also	4	*	17	I	˜1.1	0.01	15	MI	˜1.0	0	−1	NC	0	0
U73499	Human hapatic nuclear factor 1-alpha (TCF-1-alpha) “gene,” promoter region and pa	189	*	−68	NC	0	0	−244	MD	˜9.4	4.5	−35	NC	0	0
X16707	Human fra-1 mRNA	18	*	25	NC	0	0	196	I	˜10.7	4.48	236	I	˜12.7	5.58
M21388	Human unproductively rearranged lg mu-chain mRNA V-region (VD), 5′ end, clone m	−7		187	NC	0	0	200	I	˜9.7	4.17	258	I	˜12.5	5.78
D38293	Human mRNA for clathrin-like “protein,” complete cds	28	*	−1	NC	0	0	218	MI	8.9	4.05	−13	NC	0	0
		22		43	NC	0	0	185	I	9.2	3.86	51	I	3.3	0.58
		−36	*	20	NC	0	0	207	I	˜8.5	3.8	43	NC	0	0
U50648	Human interferon-inducible RNA-dependent protein kinase (Pkr) gene — “Also Repres	39	*	29	NC	0	0	233	I	7	3.36	−6	NC	0	0
X89416	H. sapiens mRNA for protein phosphatase 5	49		54	NC	0	0	256	I	6.2	3.09	110	MI	3.3	0.84
Z78289	H. sapiens mRNA (clone 1D2). /gb = Z78289 /ntype = DNA /annol = mRNA	182	*	−81	NC	0	0	−158	D	7.6	3	−31	NC	0	0
U22431	Human hypoxia-inducible factor 1 alpha (HIF-1 alpha) “mRNA,” complete cds — “Also	29	*	4	NC	0	0	175	I	7.1	2.93	21	NC	0	0
Y09836	H. sapiens mRNA for 3′UTR of unknown protein	11	*	−30	NC	0	0	139	I	˜7.5	2.75	24	NC	0	0
Z50194	H. sapiens mRNA for PQ-rich protein	46		57	NC	0	0	199	I	5.3	2.28	164	I	4.5	1.69
G3543-HT373	Insulin-Like Growth Factor 2	129		−37	NC	0	0	−129	D	˜6.4	2.27	−14	NC	0	0
U76010	Human putative zinc transporter ZnT-3 (ZnT-3) “mRNA,” complete cds.	469		−179	NC	0	0	−351	D	4	2.07	−173	NC	0	0
U88047	Human DNA binding protein homolog (DRX) “mRNA,” partial cds	−40	*	117	NC	0	0	147	I	˜5.4	1.97	146	NC	0	0
U41766	Human metalloprotease/disintegrin/cysteine-rich protein precursor (MDC9) “mRNA,”	25	*	5	NC	0	0	110	I	5.3	1.69	−7	NC	0	0
		10	*	16	NC	0	0	100	I	˜5.5	1.67	10	NC	0	0
X78817	H. sapiens partial C1 mRNA	206	*	−61	NC	0	0	−160	D	4.5	1.65	−31	NC	0	0
		−19	*	33	NC	0	0	120	I	˜5.0	1.64	48	I	˜1.4	0.07
U41387	Human Gu protein “mRNA,” partial cds	53		3	NC	0	0	173	I	4.3	1.6	4	NC	0	0
		39	*	89	NC	0	0	129	I	4.3	1.4	29	MI	1.8	0.12
X70649	H. sapiens cl. 1042 mRNA of DEAD box protein family	49	*	32	NC	0	0	150	I	4.1	1.38	1	NC	0	0
D79999	Human mRNA for KIAA0177 “gene,” partial cds	32	*	−10	NC	0	0	109	I	4.4	1.33	11	NC	0	0
U79291	Human clone 23721 mRNA sequence	16	*	−18	NC	0	0	82	I	˜4.9	1.3	4	NC	0	0
J03473	Human poly(ADP-ribose) synthetase “mRNA,” complete cds	61		69	NC	0	0	164	I	3.7	1.26	85	I	2.4	0.42
U58046	Human p167 “mRNA,” complete cds — Also Represents: D50929	21		−4	NC	0	0	79	I	4.7	1.22	−7	NC	0	0
U62437	Human nicotinic acetylcholine receptor beta2 subunit “precursor,” “mRNA,” complete	78		−89	NC	0	0	−107	D	˜3.9	1.1	−58	NC	0	0
M94880	Human MHC class I (HLA-A*8001) mRNA — “Also Similar To: M80469_ma1, M80468	127		124	NC	0	0	241	I	2.9	1.02	244	I	2.9	1.04
L14076	Human pre-mRNA splicing factor SRp75 “mRNA,” complete cds	31		63	NC	0	0	90	MI	3.9	1.02	46	NC	0	0
X07979	Human mRNA for fibronectin receptor beta subunit	682		−41	NC	0	0	790	I	2.2	1.01	−184	D	1.4	0.12
D29640	Human mRNA for KIAA0051 “gene,” complete cds — Also Represents: L33075	26		7	NC	0	0	77	I	4	0.97	11	NC	0	0
U12139	Human alpha1(XI) collagen (COL11a1) “gene,” 5′ region and exon 1 /gb = U12139 /nt	66	*	−54	NC	0	0	−136	D	˜3.3	0.95	−54	NC	0	0
S72008	hCDC10 = CDC10 homolog “[human,” fetal “lung,” “mRNA,” 2314 nt]	43		−12	NC	0	0	106	I	3.5	0.92	0	NC	0	0
G3214-HT339	Metallopanstimulin 1	4442		−579	NC	0	0	−1874	D	1.7	0.88	−438	D	1.1	0.05
L47276	Homo sapiens (cell line HL-60) alpha topolsomerase truncated-form “mRNA,” 3′UTR	58		1	NC	0	0	128	I	3.2	0.88	−8	NC	0	0
		7505		221	NC	0	0	3946	I	1.5	0.86	1205	NC	0	0
U05040	Human FUSE binding protein “mRNA,” complete cds	60	*	24	NC	0	0	129	I	3.1	0.86	3	NC	0	0
D79986	Human mRNA for KIAA0164 “gene,” complete cds	4	*	25	NC	0	0	71	I	˜3.8	0.85	15	NC	0	0
L13210	Human Mac-2 binding protein “mRNA,” complete cds	463		156	NC	0	0	526	I	2.1	0.81	483	I	2	0.7
D16481	Human mRNA for mitochondrial 3-ketoacyl-CoA thiolase beta-subunit of trifunctional	45	*	41	NC	0	0	102	I	3.2	0.8	57	I	2.3	0.31
M14660	Human ISG-54K gene (interferon stimulated gene) encoding a 54 kDa protein	−62	*	57	I	˜1.0	0	123	I	˜3.1	0.8	57	I	˜1.0	0
Y07604	H. sapiens mRNA for nucleoside-diphosphate kinase	194		20	NC	0	0	277	I	2.4	0.77	151	I	1.8	0.27
M21259	Human Alu repeats in the region 5′ to the small nuclear ribonucleoprotein E gene	102		122	NC	0	0	176	I	2.7	0.77	91	I	1.9	0.25
U81554	Human CaM kinase II isoform “mRNA,” complete cds. /gb = U81554 /ntype = RNA	112		52	NC	0	0	185	I	2.7	0.75	5	NC	0	0
U70370	Human hindIImb expressed homeobox protein backfoot (Bft) “mRNA,” complete cds	−112	*	75	MI	˜1.0	0	166	MI	˜2.7	0.74	84	I	˜1.0	0
Z25535	H. sapiens mRNA for nuclear pore complex protein hnup153	22	*	12	NC	0	0	60	I	3.7	0.74	26	NC	0	0
Z48042	H. sapiens mRNA encoding GPI-anchored protein p137	220		89	NC	0	0	288	I	2.3	0.71	137	I	1.6	0.2
		31	*	−6	NC	0	0	72	MI	3.3	0.71	33	I	2.1	0.19
		5559		−17	NC	0	0	2845	I	1.5	0.71	−620	NC	0	0
X54326	H. sapiens mRNA for glutaminyl-tRNA synthetase	49	*	−11	NC	0	0	100	I	3	0.71	−5	NC	0	0
X15187	Human tra1 mRNA for human homologue of murine tumor rejection antigen gp96	125		3	NC	0	0	191	I	2.5	0.7	−23	NC	0	0
X60036	H. sapiens mRNA for mitochondrial phosphate carrier protein	3078		−156	NC	0	0	−1270	D	1.7	0.7	−96	NC	0	0
		3	*	27	NC	0	0	65	I	˜3.4	0.69	28	MI	˜1.5	0.07
		0	*	49	NC	0	0	67	MI	˜3.4	0.68	47	MI	˜2.4	0.3
U61232	Human tubulin-folding cofactor E “mRNA,” complete cds	69		−18	NC	0	0	−59	D	˜3.5	0.68	−18	NC	0	0
U30894	Human N-sulphoglucosamine sulphohydrolase “mRNA,” complete cds	71		−32	NC	0	0	−55	D	˜3.5	0.67	−15	NC	0	0
D63875	Human mRNA for KIAA0155 “gene,” complete cds	14		−1	NC	0	0	55	I	˜3.5	0.66	12	NC	0	0
M85164	Homo sapiens SRF accessory protein 1B (SAP-1) “mRNA,” complete cds	11	*	9	NC	0	0	56	I	˜3.4	0.63	21	I	˜1.6	0.07
U34605	Human retinoic acid- and interferon-inducible 58K protein RI58 “mRNA,” complete cd	8	*	8	NC	0	0	59	I	˜3.3	0.62	13	NC	0	0
L08069	Human heat shock “protein,” E. coli DnaJ homologue “mRNA,” complete cds	168		81	NC	0	0	218	I	2.3	0.61	15	NC	0	0
X92396	H. sapiens mRNA for novel gene in Xq28 region	78		1	NC	0	0	126	I	2.6	0.6	−7	NC	0	0
X98260	H. sapiens mRNA for M-phase “phosphoprotein,” mpp11	−9	*	15	NC	0	0	70	I	˜3.1	0.6	2	NC	0	0
M23161	Human transposon-like element mRNA	112		16	NC	0	0	161	I	2.4	0.59	−35	NC	0	0
M28249	Human very late antigen-2 (VLA-2)/collagen receptor alpha-2 subunit “mRNA,” comp	31	*	−3	NC	0	0	65	I	3.1	0.59	−9	NC	0	0
M82882	Human cis-acting sequence	2	*	20	NC	0	0	61	I	˜3.1	0.59	7	NC	0	0
X05276	Human mRNA for fibroblast tropomyosin TM30 (pl)	414		38	NC	0	0	406	I	2	0.59	−81	NC	0	0
D13630	Human mRNA for KIAA0005 “gene,” complete cds	199		111	NC	0	0	238	I	2.2	0.58	41	NC	0	0
L23959	Homo sapiens E2F-related transcription factor (DP-1) “mRNA,” complete cds	33		−30	NC	0	0	67	MI	3	0.58	−21	NC	0	0
D16480	Human mRNA for mitochobdrial enoyl-CoA hydratase/3-hydroxyacyl-CoA dehydroge	92	*	27	NC	0	0	136	MI	2.5	0.57	14	NC	0	0
G2743-HT392	Caldesmon “1,” Alt. Splice “6,” Non-Muscle — “Also Represents: HG2743-HT3927, M	3	*	6	NC	0	0	60	I	˜3.1	0.57	2	NC	0	0
U45973	Human phosphalidylinositol “(4,5)bisphosphate” 5-phosphatase homolog “mRNA,” pa	236		−58	NC	0	0	−141	D	2.5	0.57	−43	NC	0	0
M20867	Human glutamate dehydrogenase (GDH) “mRNA,” complete cds — Also Represents:	98		85	NC	0	0	141	I	2.4	0.56	48	NC	0	0
U78798	Human TNF receptor associated factor 6 (TRAF6) “mRNA,” complete cds.	117		−72	NC	0	0	−76	MD	2.8	0.55	−88	D	4.1	1.08
J04102	Human erythroblastosis virus oncogene homolog 2 (ets-2) “mRNA,” complete cds	20	*	−6	NC	0	0	47	MI	3.3	0.55	14	NC	0	0
X60188	Human ERK1 mRNA for protein serine/threonine kinase	214		−88	NC	0	0	−128	D	2.5	0.55	−18	NC	0	0
		10717		−1650	NC	0	0	−3023	D	1.4	0.54	−1322	D	1.1	0.11
G3638-HT384	Amyloid Beta (A4) Precursor “Protein,” Alt. Splice “2,” A4(751) — Also Represents: YO	93		47	NC	0	0	134	I	2.4	0.54	58	NC	0	0
M77698	Homo sapiens GLI-Krupple related protein (YY1) “mRNA,” complete cds	114		36	NC	0	0	154	I	2.3	0.54	37	NC	0	0
X96969	H. sapiens mRNA for urea transporter	62	*	−11	NC	0	0	−53	D	˜3.1	0.54	−3	NC	0	0
Z69915	H. sapiens mRNA (clone ICRFp507L1876). /gb = Z69915 /ntype = RNA	23	*	4	NC	0	0	50	I	3.2	0.54	5	NC	0	0
AB001106	Human mRNA for glia maturation “factor,” complete cds	6	*	9	NC	0	0	55	I	˜3.0	0.53	16	NC	0	0
X62534	H. sapiens HMG-2 mRNA — “Also Represents: Z17240, M83665_ma1”	164		29	NC	0	0	195	I	2.2	0.52	−37	NC	0	0
D38551	Human mRNA for KIAA0078 “gene,” complete cds	35		5	NC	0	0	66	I	2.8	0.51	8	NC	0	0
D63477	Human mRNA for KIAA0143 “gene,” partial cds	45		15	NC	0	0	77	I	2.7	0.51	−6	NC	0	0
L06499	Homo sapiens ribosomal protein L37a (RPL37A) “mRNA,” complete cds	9324		−1501	NC	0	0	−2660	D	1.4	0.51	−1592	NC	0	0
U28811	Human cysteine-rich fibroblast growth factor receptor (CFR-1) “mRNA,” complete cds	93		−36	NC	0	0	−61	D	2.9	0.51	−51	NC	0	0
X55715	Human Hums3 mRNA for 40S ribosomal protein s3	7796		−175	NC	0	0	−2315	MD	1.4	0.51	−838	NC	0	0
Z15115	H. sapiens TOP2 mRNA for DNA topoisomerase II (partial)	41		−24	NC	0	0	71	MI	2.7	0.5	−21	D	˜2.0	0.14
U26312	Human heterochromatin protein HP1Hs-gamma “mRNA,” complete cds — Also Repre	64		4	NC	0	0	99	MI	2.5	0.5	−19	NC	0	0
		−25	*	21	NC	0	0	79	I	˜2.7	0.49	51	I	˜1.3	0.04
X74039	H. sapiens mRNA for urokinase plasminogen activator receptor	22	*	30	NC	0	0	46	MI	3.1	0.49	27	NC	0	0
D63861	Human DNA for cyclophilin “40,” complete cds — Also Represents: L11667	50		22	NC	0	0	80	I	2.6	0.48	3	NC	0	0
G2755-HT288	T-Plastin	64		1	NC	0	0	95	I	2.5	0.48	−34	NC	0	0
X66363	H. sapiens mRNA PCTAIRE-1 for serine/threonine protein kinase	68	*	20	NC	0	0	99	I	2.4	0.47	46	MI	1.7	0.13
U19252	Human putative transmembrane protein “mRNA,” complete cds — Also Represents: U	11	*	13	NC	0	0	48	I	˜3.0	0.47	19	NC	0	0
D23660	Human mRNA for ribosomal “protein,” complete cds	5996		79	NC	0	0	−1804	D	1.4	0.46	−1017	NC	0	0
		−17	*	45	NC	0	0	70	I	˜2.6	0.45	58	NC	0	0
G4557-HT496	Small Nuclear Ribonucleoprotein “U1,” 1snrp	−3	*	8	NC	0	0	58	I	˜2.8	0.45	11	NC	0	0
J04088	Human DNA topoisomerase II (top2) “mRNA,” complete cds	33	*	3	NC	0	0	59	I	2.7	0.45	−2	NC	0	0
M63896	Homo sapiens transcriptional enhancer factor (TEF1) “DNA,” complete CDS	15	*	7	NC	0	0	44	I	˜3.0	0.45	−5	NC	0	0
X01677	Human liver mRNA for glyceraldehyde-3-phosphate dehydrogenase “(G3PD,” EC 1.2	9394		−1733	NC	0	0	−2482	D	1.4	0.44	−1164	NC	0	0
X80200	H. sapiens MLN62 mRNA	302		8	NC	0	0	−160	MD	2.1	0.44	−9	NC	0	0
G4660-HT507	Microtubule-Associated Protein 1b	13	*	30	NC	0	0	45	I	˜2.9	0.43	25	I	˜1.9	0.13
		17	*	7	NC	0	0	41	I	˜2.9	0.43	9	NC	0	0
		1	*	8	NC	0	0	53	MI	˜2.7	0.42	15	NC	0	0
D21260	Human mRNA for KIAA0034 “gene,” complete cds	79		−1	NC	0	0	103	MI	2.3	0.42	7	NC	0	0
X84740	H. sapiens mRNA for DNA ligase III	90		−16	NC	0	0	−56	MD	2.7	0.42	48	NC	0	0
X15183	Human mRNA for 90-kDa heat-shock protein	1516		196	NC	0	0	827	I	1.5	0.41	−374	D	1.3	0.15
L18960	Human protein synthesis factor (elF-4C) “mRNA,” complete cds	46		19	NC	0	0	69	I	2.5	0.41	12	NC	0	0
L14837	Human tight junction (zonula occludens) protein ZO-1 “mRNA,” complete cds	29		−3	NC	0	0	49	I	2.7	0.4	18	NC	0	0
L20298	Homo sapiens transcription factor (CBFB) “mRNA,” 3′ end	75		9	NC	0	0	96	I	2.3	0.4	24	NC	0	0
M13934	RPS14 gene (ribosomal protein S14) extracted from Human ribosomal protein S14 “g	5922		−708	NC	0	0	−1680	D	1.4	0.4	−219	NC	0	0
M87338	Human replication factor “C,” 40-kDa subunit (A1) “mRNA,” complete cds	86		−26	NC	0	0	−53	D	2.6	0.4	−20	NC	0	0
L24804	Human (p23) “mRNA,” complete cds	149		41	NC	0	0	154	I	2	0.39	49	NC	0	0
L36844	Homo sapiens (clone p15INK4B/HA5) CDK inhibitory protein “mRNA,” complete cds	1	*	58	NC	0	0	51	MI	˜2.6	0.38	21	NC	0	0
M33374	Human cell adhesion protein (SQM1) “mRNA,” complete cds	192		46	NC	0	0	−105	MD	2.2	0.38	19	NC	0	0
U37547	Human IAP homolog B (MIHB) “mRNA,” complete cds	10	*	21	NC	0	0	44	I	˜2.7	0.38	4	NC	0	0
X59798	Human PRAD1 mRNA for cyclin	498		−118	NC	0	0	352	I	1.7	0.37	−161	D	1.5	0.16
M18000	Human ribosomal protein S17 “gene,” complete cds	5362		−839	NC	0	0	−1497	D	1.4	0.37	−914	D	1.2	0.14
J02621	Human non-histone chromosomal protein HMG-14 “mRNA,” complete cds — Also Rep	262		131	NC	0	0	225	I	1.9	0.37	−1	NC	0	0
U16307	Human glioma pathogenesis-related protein (GIIPR) “mRNA,” complete cds	12	*	2	NC	0	0	42	I	˜2.7	0.37	−5	NC	0	0
X65488	H. sapiens U21.1 mRNA	234		−46	NC	0	0	205	I	1.9	0.37	−25	NC	0	0
X98411	H. sapiens mRNA for myosin-IE	137		−43	NC	0	0	−78	D	2.3	0.37	−31	NC	0	0
D28476	Human mRNA for KIAA0045 “gene,” complete cds	51		−23	NC	0	0	69	I	2.3	0.36	−22	MD	1.7	0.1
D87716	Human mRNA for KIAA0007 “gene,” partial cds — Also Represents: D26488	18	*	−9	NC	0	0	37	I	˜2.8	0.36	2	NC	0	0
M37190	Human ras inhibitor “mRNA,” 3′ end	39	*	−15	NC	0	0	57	MI	2.5	0.36	1	NC	0	0
S42303	N-cadherin “[human,” umbilical vein endothelial “cells,” “mRNA,” 4132 nt]	48		20	NC	0	0	65	I	2.4	0.35	39	I	1.8	0.15
L09235	Human vacuolar ATPase (isoform VA68) “mRNA,” complete cds	2	*	10	NC	0	0	48	I	˜2.5	0.35	17	NC	0	0
U15008	Human SnRNP core protein Sm D2 “mRNA,” complete cds	3474		−245	NC	0	0	−1045	D	1.4	0.35	−504	NC	0	0
U90551	Human histone 2A-like protein (H2A/l) “mRNA,” complete cds	11	*	42	NC	0	0	41	I	˜2.6	0.35	17	NC	0	0
AB006782	Homo sapiens mRNA for galectin-9 “isoform,” complete cds. /gb = AB006782 /ntype =	134	*	0	NC	0	0	134	I	2	0.34	22	NC	0	0
G3748-HT401	Basic Transcription “Factor,” 44 Kda Subunit	124		−14	NC	0	0	125	I	2	0.34	−23	NC	0	0
U13219	Human forkhead protein FREAC-1 “mRNA,” complete cds	21	*	−8	NC	0	0	36	I	2.7	0.34	−4	NC	0	0
M11058	Human 3-hydroxy-3-methylglutaryl coenzyme A reductase “mRNA,” complete cds	23	*	−9	NC	0	0	38	I	2.6	0.33	−12	NC	0	0
U32114	Human caveolin-2 “mRNA,” complete cds	30		1	NC	0	0	45	I	2.5	0.33	−5	NC	0	0
U60325	Human DNA polymerase gamma “mRNA,” nuclear gene encoding mitochondrial “pro	94		−7	NC	0	0	−54	D	2.3	0.32	9	NC	0	0
U68019	Human mad protein homolog (hMAD-3) “mRNA,” complete cds	160		37	NC	0	0	144	I	1.9	0.32	28	NC	0	0
X05908	Human mRNA for lipocortin	120		7	NC	0	0	119	I	2	0.32	−69	NC	0	0
Z48512	H. sapiens XG mRNA (clone PEP6). /gb = Z48512 /ntype = RNA	52	*	−2	NC	0	0	−39	MD	˜2.6	0.32	15	NC	0	0
D13645	Human mRNA for KIAA0020 “gene,” complete cds	16	*	−15	NC	0	0	36	MI	˜2.6	0.31	8	NC	0	0
M27436	Human tissue factor “gene,” complete “cds,” with a Alu repetitive sequence in the 3′	55		16	NC	0	0	67	I	2.2	0.31	−9	NC	0	0
U10492	Human Mox1 protein (MOX1) “mRNA,” complete cds	4	*	37	NC	0	0	45	I	˜2.4	0.31	26	NC	0	0
U49070	Human peptidyl-prolyl isomerase and essential mitotic regulator (PIN1) “mRNA,” com	245		−61	NC	0	0	−120	D	2	0.31	−19	NC	0	0
U52100	Human XMP “mRNA,” complete cds	93		−29	NC	0	0	−53	D	2.3	0.31	8	NC	0	0
X75091	H. sapiens mRNA for HLA-DR associated protein II (PHAPII) — Also Represents: M93	161		12	NC	0	0	143	I	1.9	0.31	−25	NC	0	0
Z48511	H. sapiens XG mRNA (clone PEP11)	51	*	−14	NC	0	0	−39	D	˜2.5	0.31	−17	NC	0	0
		1	*	6	NC	0	0	47	I	˜2.4	0.3	4	NC	0	0
U35835	Human DNA-PK “mRNA,” partial cds — Also Represents: U47077	42		−29	NC	0	0	54	MI	2.3	0.3	−19	NC	0	0
U82130	Human tumor susceptibility protein (TSG101) “mRNA,” complete cds	108		44	NC	0	0	105	I	2	0.3	3	NC	0	0
X66503	Human adenylosuccinate synthetase mRNA	27	*	−1	NC	0	0	39	I	2.5	0.3	−6	NC	0	0
Z18951	H. sapiens mRNA for caveolin	353		−69	NC	0	0	246	I	1.7	0.3	−66	NC	0	0
U90552	Human butyrophilin (BTF5) “mRNA,” complete cds — Also Represents: U97502_ma1	51		50	NC	0	0	60	MI	2.2	0.29	63	MI	2.2	0.31
D00723	Human mRNA for hydrogen carrier “protein,” a component of an enzyme “complex,”	12	*	9	NC	0	0	37	I	˜2.5	0.29	10	NC	0	0
HG884-HT884	Oncogene “E6-Ap,” Papillomavirus — Also Represents: U84404	11	*	16	NC	0	0	37	I	˜2.4	0.29	10	NC	0	0
J03764	“Human,” plasminogen activator inhibitor-1 “gene,” exons 2 to 9	928		20	NC	0	0	471	I	1.5	0.29	−23	NC	0	0
M28215	Homo sapiens GTP-binding protein (RAB5) “mRNA,” complete cds	8	*	7	NC	0	0	40	MI	˜2.4	0.29	14	NC	0	0
U03272	Human fibrillin-2 “mRNA,” complete cds	14	*	7	NC	0	0	36	I	˜2.5	0.29	23	NC	0	0
U73936	Human Jagged 1 (HJ1) “mRNA,” complete cds	77		37	NC	0	0	82	I	2.1	0.29	12	NC	0	0
X16832	Human mRNA for cathepsin H (EC 3.4.22.16)	39	*	−29	NC	0	0	50	I	2.3	0.29	42	NC	0	0
M83667	Human NF-IL6-beta protein “mRNA,” complete cds — Also Represents: S63168_ma1	24		6	NC	0	0	35	I	2.5	0.28	84	I	4.5	1.19
D38550	Human mRNA for KIAA0075 “gene,” partial cds	17	*	−6	NC	0	0	33	I	˜2.5	0.28	14	I	˜1.6	0.06
		8110		−377	NC	0	0	2128	I	1.3	0.28	1289	NC	0	0
D44466	Human mRNA for proteasome subunit “p112,” complete cds	237		−9	NC	0	0	179	I	1.8	0.28	−64	NC	0	0
K03195	Human (HepG2) glucose transporter gene “mRNA,” complete cds	201		160	NC	0	0	159	MI	1.8	0.28	159	NC	0	0
S77356	transcript ch21 = oligomycin sensitivity conferral protein oscp homolog “[human,” “RF1	241		5	NC	0	0	180	MI	1.7	0.28	27	NC	0	0
U01157	Human glucagon-like peptide-1 receptor mRNA with CA dinucleotide “repeat,” compl	21	*	5	NC	0	0	32	MI	2.5	0.28	−8	NC	0	0
U78524	Human Gu binding protein “mRNA,” partial cds.	64	*	9	NC	0	0	70	MI	2.1	0.28	26	NC	0	0
X70394	H. sapiens OZF mRNA	28		−8	NC	0	0	39	I	2.4	0.28	−2	NC	0	0
Z29083	H. sapiens 5T4 gene for 5T4 Oncofetal antigen	190		58	NC	0	0	153	I	1.8	0.28	7	NC	0	0
X96752	H. sapiens mRNA for L-3-hydroxyacyl-CoA dehydrogenase	17	*	14	NC	0	0	32	I	˜2.5	0.27	59	I	˜3.8	0.8
U09953	Human ribosomal protein L9 “mRNA,” complete cds	3077		45	NC	0	0	−843	D	1.4	0.27	−822	D	1.4	0.26
M11147	Human ferritin L chain “mRNA,” complete cds	5140		−601	NC	0	0	−1243	D	1.3	0.27	−1145	D	1.3	0.23
G4557-HT496	Small Nuclear Ribonucleoprotein “U1,” 1snrp	0	*	8	NC	0	0	45	I	˜2.3	0.27	−6	NC	0	0
M83216	Human aorta caldesmon “mRNA,” complete cds — “Also Represents: HG2743-HT392	6	*	−9	NC	0	0	41	I	˜2.3	0.27	−3	NC	0	0
S67070	heat shock protein HSP72 homolog “[human,” thyroid associated ophthalmopathy “pa	43	*	−54	NC	0	0	−62	MD	˜2.1	0.27	−1	NC	0	0
X00588	Human mRNA for precursor of epidermal growth factor receptor	14	*	−4	NC	0	0	34	I	˜2.4	0.27	4	NC	0	0
X16560	Human COX VIIc gene for subunit VIIc of cytochrome c oxidase (EC 1.9.3.1)	1974		−3	NC	0	0	−594	MD	1.4	0.26	−495	D	1.3	0.18
U14973	Human ribosomal protein S29 “mRNA,” complete cds	5050		−470	NC	0	0	−1211	D	1.3	0.26	−971	D	1.2	0.17
M26730	Human mitochondrial ublquinone-binding protein “gene,” 5′ flank with an LTR-like sec	137		40	NC	0	0	115	MI	1.8	0.26	−50	D	1.6	0.11
D83777	Human mRNA for KIAA0193 “gene,” complete cds	82		−9	NC	0	0	80	I	2	0.26	−21	MD	1.3	0.04
M23254	Human Ca2-activated neutral protease large subunit (CANP) “mRNA,” complete cds	791		80	NC	0	0	394	I	1.5	0.26	−44	NC	0	0
M86400	Human phospholipase A2 “mRNA,” complete cds	836		93	NC	0	0	411	I	1.5	0.26	58	NC	0	0
S79873	h-lamp-2 = lysosome-associated membrane protein-2 {alternatively spliced} “[human,”	12		12	NC	0	0	35	I	˜2.4	0.26	3	NC	0	0
S82297	beta 2-microglubulin {11bp deleted between nucleotides 98-99} “[human,” colon canc	704		36	NC	0	0	362	I	1.5	0.26	−59	NC	0	0
U33920	Human clone lambda 5 semaphorin “mRNA,” complete cds	−7	*	17	NC	0	0	51	MI	˜2.2	0.26	5	NC	0	0
U65579	Human mitochrondrial NADH dehydrogenase-ublquinone Fe—S protein “8,” 23 kDa su	220		35	NC	0	0	−103	MD	1.9	0.26	99	NC	0	0
U95740	362G6.2 gene extracted from Human chromosome 16p 13.1 BAC clone CIT987SK-36	4	*	22	NC	0	0	41	MI	˜2.3	0.26	16	NC	0	0
D83004	Human epidermoid carcinoma mRNA for ublquitin-conjugating enzyme E2 similar to	213		130	NC	0	0	153	I	1.7	0.25	41	MI	1.2	0.03
D87120	Human cancellous bone osteoblast mRNA for “GS3786,” complete cds	13	*	−5	NC	0	0	34	I	˜2.3	0.25	1	NC	0	0
D89377	Human mRNA for “MSX-2,” complete cds — Also Represents: X69295 Same Unigen	48		2	NC	0	0	−31	D	˜2.4	0.25	−8	NC	0	0
M19961	Human cytochrome c oxidase subunit Vb (coxVb) “mRNA,” complete cds	1036		47	NC	0	0	−350	D	1.5	0.25	−91	NC	0	0
M59830	Human MHC class III HSP70-2 gene “(HLA),” complete cds	100		32	NC	0	0	90	MI	1.9	0.25	21	NC	0	0
U77413	Human O-linked GlcNAc transferase “mRNA,” complete cds. /gb = U77413 /ntype = RN	8	*	−1	NC	0	0	38	MI	˜2.3	0.25	0	NC	0	0
X01060	Human mRNA for transferrin receptor	485		94	NC	0	0	277	I	1.6	0.25	26	NC	0	0
X62654	ME491 gene extracted from H. sapiens gene for Me491/CD63 antigen	1391		131	NC	0	0	−438	D	1.5	0.25	63	NC	0	0
Z31690	H. sapiens (HepG2) LAL mRNA for lysosomal acid lipase — “Also Represents: X76488	16	*	1	NC	0	0	32	I	˜2.4	0.25	−13	NC	0	0
M63573	Human secreted cyclophilin-like protein (SCYLP) “mRNA,” complete cds	2163		−384	NC	0	0	−603	D	1.4	0.24	−501	D	1.3	0.16
X96924	H. sapiens gene encoding mitochrondrial citrate transport protein	679		−140	NC	0	0	−247	MD	1.6	0.24	217	I	1.3	0.11
U00947	Human clone C4E 3.2 (CAC)n/(GTG)n repeat-containing mRNA — Also Represents:	860		83	NC	0	0	402	I	1.5	0.24	160	I	1.2	0.05
		10469		−1403	NC	0	0	−1969	D	1.2	0.24	−1192	NC	0	0
HG429-HT429	B-Cell Growth Factor 1	159		26	NC	0	0	124	I	1.8	0.24	−63	NC	0	0
M25077	Human SS-A/Re ribonucleoprotein autoantigen 60 kd subunit “mRNA,” complete cds	−18	*	20	NC	0	0	59	I	˜2.0	0.24	−1	NC	0	0
S74728	antiquitin = 26g turgor protein homolog “[human,” “kidney,” “mRNA,” 1809 nt]	67		0	NC	0	0	67	I	2	0.24	1	NC	0	0
U37426	Human kinesin-like spindle protein HKSP (HKSP) “mRNA,” complete cds	14	*	−21	NC	0	0	33	I	˜2.3	0.24	−13	NC	0	0
X14684	Human mRNA for La protein C-terminal region — “Also Represents: X13697, M20328	65		−18	NC	0	0	64	I	2	0.24	−41	NC	0	0
Z80777	H. sapiens H2A/k gene	−6	*	13	NC	0	0	49	I	˜2.1	0.24	5	NC	0	0
D14826	Human mRNA for hCREM (cyclic AMP-responsive element modulator) type 2 “prote	23	*	24	NC	0	0	31	I	2.3	0.23	19	I	1.8	0.11
		20	*	12	NC	0	0	28	MI	˜2.4	0.23	9	NC	0	0
L29008	Human L-iditol-2 dehydrogenase “mRNA,” complete cds	139		39	NC	0	0	108	MI	1.8	0.23	49	NC	0	0
U40369	Human spermidine/spermine N1-acetyltransferase (SSAT) “gene,” complete cds	21		12	NC	0	0	29	I	2.4	0.23	3	NC	0	0
U57341	Human neurofilament triplet L protein “mRNA,” partial cds. /gb = U57341 /ntype = RNA	23	*	20	NC	0	0	30	MI	2.3	0.23	15	NC	0	0
U76189	Human EXTL3 “mRNA,” partial cds. /gb = U76189 /ntype = RNA	15	*	−2	NC	0	0	31	I	˜2.3	0.23	−5	NC	0	0
M29064	Human hnRNP B1 protein mRNA	377		−77	NC	0	0	213	I	1.6	0.22	−174	D	1.9	0.32
G3936-HT420	Interleukin 9 Receptor (Gb:S71404)	45	*	−15	NC	0	0	−32	MD	˜2.2	0.22	−39	NC	0	0
L19161	Human translation initiation factor elF-2 gamma subunit “mRNA,” complete cds	56		20	NC	0	0	55	I	2	0.22	−2	NC	0	0
M14113	Human coagulation factor VIII:C “mRNA,” complete cds	11	*	−22	D	˜1.0	0	33	I	˜2.2	0.22	5	NC	0	0
S82024	SCG10 = neuron-specific growth-associated protein/stathmin homolog “[human,” “emb	12	*	8	NC	0	0	33	I	˜2.2	0.22	−4	NC	0	0
U67171	Human selenoprotein W (selW) “mRNA,” complete cds. /gb = U67171 /ntype = RNA	586		100	NC	0	0	−213	MD	1.6	0.22	−12	NC	0	0
		7780		−799	NC	0	0	−1472	D	1.2	0.21	−223	NC	0	0
D78361	Human mRNA for omithine decarboxylase “antizyme,” ORF 1 and ORF 2	6151		−96	NC	0	0	−1256	D	1.3	0.21	−366	NC	0	0
G2981-HT312	“Epican,” Alt. Splice 1 — “Also Represents: HG2981-HT3934, HG2981-HT3931, HG29	408		113	NC	0	0	222	I	1.5	0.21	46	NC	0	0
L27706	Human chaperonin protein (Tcp20) gene complete cds	163		26	NC	0	0	114	I	1.7	0.21	−58	NC	0	0
M31520	Human ribosomal protein S24 mRNA — Also Represents: HG3214-HT3391	73		−23	NC	0	0	−38	D	2.1	0.21	−25	NC	0	0
M37197	Human CCAAT-box-binding factor (CBF) “mRNA,” complete cds	21	*	0	NC	0	0	27	MI	2.3	0.21	−19	NC	0	0
U09510	Human glycyl-tRNA synthetase “mRNA,” complete cds — Also Represents: U09587	445		66	NC	0	0	234	I	1.5	0.21	12	NC	0	0
U51990	Human hPrp18 “mRNA,” complete cds	−3	*	12	NC	0	0	44	I	˜2.0	0.21	7	NC	0	0
U78027	L44L gene (L44-like ribosomal protein) extracted from Human Bruton's tyrosine kinas	39	*	−22	NC	0	0	−56	D	˜2.0	0.21	6	NC	0	0
U94832	Human KH type splicing regulatory protein KSRP “mRNA,” complete cds.	336		137	NC	0	0	193	I	1.6	0.21	85	NC	0	0
Y08612	H. sapiens mRNA for Nup88 protein	105		34	NC	0	0	85	MI	1.8	0.21	23	NC	0	0
D31767	Human mRNA for KIAA0058 “gene,” complete cds	171		65	NC	0	0	115	I	1.7	0.2	71	MI	1.4	0.09
D13627	Human mRNA for KIAA0002 “gene,” complete cds	277		42	NC	0	0	162	I	1.6	0.2	−86	NC	0	0
D26018	Human mRNA for KIAA0039 “gene,” partial cds	12	*	20	NC	0	0	31	I	˜2.1	0.2	11	NC	0	0
D80005	Human mRNA for KIAA0183 “gene,” partial cds	111		−11	NC	0	0	86	I	1.8	0.2	22	NC	0	0
L05147	Human dual specificity phosphatase tyrosine/serine “mRNA,” complete cds	54		−7	NC	0	0	−29	D	2.2	0.2	−15	NC	0	0
L35546	Homo sapiens gamma-glutamylcysteine synthetase light subunit “mRNA,” complete	150		33	NC	0	0	107	MI	1.7	0.2	43	NC	0	0
U06698	Human neuronal kinesin heavy chain “mRNA,” complete cds	4	*	18	NC	0	0	38	I	˜2.1	0.2	15	NC	0	0
X66899	H. sapiens EWS mRNA	438		−74	NC	0	0	228	I	1.5	0.2	61	NC	0	0
Z70759	H. sapiens mitochondrial 16S rRNA gene (partial). /gb = Z70759 /ntype = RNA	6416		−979	NC	0	0	1445	MI	1.2	0.2	−699	NC	0	0
D31887	Human mRNA for KIAA0062 “gene,” partial cds	270		49	NC	0	0	156	I	1.6	0.19	45	NC	0	0
G2815-HT402	“Myosin,” Light “Chain,” “Alkali,” Smooth Muscle “(Gb:U02629),” Smooth “Muscle,” A	4909		−209	NC	0	0	−1007	D	1.3	0.19	−815	NC	0	0
L40357	Homo sapiens thyroid receptor interactor (TRIP7) “mRNA,” 3′ end of cds	8	*	13	NC	0	0	33	I	˜2.1	0.19	1	NC	0	0
M15661	Human ribosomal protein “mRNA,” complete cds	297		100	NC	0	0	168	I	1.6	0.19	56	NC	0	0
M31642	Human hypoxanthine phosphoribosyltransferase (HPRT) “mRNA,” complete cds	9	*	−18	NC	0	0	33	I	˜2.1	0.19	−12	MD	˜1.0	0
U21090	Human DNA polymerase delta small subunit “mRNA,” complete cds	383		57	NC	0	0	−142	D	1.6	0.19	100	NC	0	0
U28833	Human Down syndrome critical region protein (DSCR1) “mRNA,” complete cds	12	*	−2	NC	0	0	30	I	˜2.1	0.19	8	NC	0	0
U29607	Human methionine aminopeptidase “mRNA,” complete cds	3	*	1	NC	0	0	38	MI	˜2.0	0.19	5	NC	0	0
U56637	Human capping protein alpha subunit isoform 1 “mRNA,” complete cds	352		−102	NC	0	0	187	I	1.5	0.19	−190	NC	0	0
X51688	Human mRNA for cyclin A	121		43	NC	0	0	88	MI	1.7	0.19	7	NC	0	0
Z49254	H. sapiens L23-related mRNA	451		76	NC	0	0	212	I	1.5	0.18	212	I	1.5	0.18
Z19554	H. sapiens vimentin gene — Also Represents: M18895_cds2 Same Unigene Cluster a	7150		−730	NC	0	0	−1301	D	1.2	0.18	−954	MD	1.2	0.11
D86960	Human mRNA for KIAA0205 “gene,” complete cds	−3	*	9	NC	0	0	42	I	˜2.0	0.18	27	I	˜1.2	0.02
Y00636	Human mRNA for lymphocyte function associated antigen-3 (LFA-3)	10	*	11	MI	˜1.1	0	31	I	˜2.1	0.18	13	I	˜1.2	0.01
D43951	Human mRNA for KIAA0099 “gene,” complete cds	26	*	0	NC	0	0	29	I	2.1	0.18	2	NC	0	0
D63878	Human mRNA for KIAA0158 “gene,” complete cds	265		−38	NC	0	0	146	I	1.6	0.18	−68	NC	0	0
D64015	Homo sapiens mRNA for T-cluster binding “protein,” complete cds. /gb = D64105 /ntyp	1	*	11	NC	0	0	39	I	˜2.0	0.18	12	NC	0	0
D78514	Human mRNA for ublquitin-conjugating “enzyme,” complete cds	23	*	22	NC	0	0	26	I	2.1	0.18	5	NC	0	0
D86978	Human mRNA for KIAA0225 “gene,” partial cds	85		14	NC	0	0	66	I	1.8	0.18	39	NC	0	0
L77886	Human protein tyrosine phosphatase “mRNA,” complete cds	85		0	NC	0	0	65	I	1.8	0.18	−23	NC	0	0
S82597	Description: UDP-GalNAc:polypeptide N-acetylgalactosaminyltransferase gene extra	0	*	9	NC	0	0	40	I	˜2.0	0.18	−1	NC	0	0
X95384	H. sapiens mRNA for unknown 14kDa protein	11	*	−14	NC	0	0	30	I	˜2.1	0.18	−6	NC	0	0
D84361	Human mRNA for p52 and p64 isoforms of “N-Shc,” complete cds	37	*	−39	NC	0	0	−49	D	˜1.8	0.17	−54	MD	˜1.8	0.18
		7968		−1139	NC	0	0	−1340	D	1.2	0.17	−532	NC	0	0
D86967	Human mRNA for KIAA0212 “gene,” complete cds	50	*	−6	NC	0	0	44	MI	1.9	0.17	8	NC	0	0
G3521-HT371	Ras-Related Protein Rap1b	81		27	NC	0	0	62	I	1.8	0.17	7	NC	0	0
K02268	Human enkephalin B (enkB) “gene,” 5′ flank and	13	*	13	NC	0	0	28	I	˜2.1	0.17	23	NC	0	0
L03532	Human M4 protein “mRNA,” complete cds	291		−35	NC	0	0	150	I	1.5	0.17	−48	NC	0	0
L05624	Homo sapiens MAP kinase kinase “mRNA,” complete cds — Also Represents: L11284	112		14	NC	0	0	78	I	1.7	0.17	−9	NC	0	0
L09209	Homo sapiens amyloid protein homologue “mRNA,” complete cds — Also Represents:	128		22	NC	0	0	86	MI	1.7	0.17	55	NC	0	0
L78440	Homo sapiens STAT4 “mRNA,” complete cds	17	*	21	NC	0	0	25	I	˜2.1	0.17	14	NC	0	0
M19283	Human cytoskeletal gamma-actin “gene,” complete cds	2495		−252	NC	0	0	−582	D	1.3	0.17	−305	NC	0	0
U28749	Human high-mobility group phosphoprotein isoform I-C (HMGIC) “mRNA,” complete	101		−51	NC	0	0	71	I	1.7	0.17	−42	NC	0	0
U73477	Human acidic nuclear phosphoprotein pp32 “mRNA,” complete cds — Also Represent	41	*	23	NC	0	0	37	I	1.9	0.17	−27	NC	0	0
U90913	Human clone 23665 mRNA sequence	366		151	NC	0	0	178	I	1.5	0.17	134	NC	0	0
X93499	H. sapiens mRNA for RAB7 protein	453		−35	NC	0	0	206	I	1.5	0.17	−25	NC	0	0
L35249	Homo sapiens vacuolar H+-ATPase Mr “56,000” subunit (HO57) “mRNA,” complete	156		106	NC	0	0	95	MI	1.6	0.16	204	I	2.3	0.59
D28423	Human mRNA for pre-mRNA splicing factor “SRp20,” 5′UTR (sequence from the 5′ca	1179		−127	NC	0	0	388	I	1.3	0.16	−429	D	1.6	0.31
D26067	Human mRNA for KIAA0033 “gene,” partial cds	19	*	10	NC	0	0	23	I	˜2.1	0.16	−3	NC	0	0
G3076-HT323	Heterogeneous Nuclear Ribonucleoprotein “K,” Alt. Splice 1 — Also Represents: X727	702		145	NC	0	0	277	I	1.4	0.16	8	NC	0	0
J00139	Human dihydrotolate reductase gene — “Also Represents: HG2846-HT2983, J00146	46		28	NC	0	0	41	I	1.9	0.16	33	NC	0	0
L05188	Homo sapiens small proline-rich protein 2 (SPRR2B) “gene,” complete cds	46		−11	NC	0	0	−24	D	2.1	0.16	−15	NC	0	0
U24266	Human pyrroline-5-carboxylate dehydrogenase (P5CDh) “mRNA,” long “form,” comp	1	*	21	NC	0	0	37	MI	˜1.9	0.16	19	NC	0	0
U29091	Human selenium-binding protein (hSBP) “mRNA,” complete cds. /gb = U29091 /ntype	36	*	−30	NC	0	0	−50	D	˜1.8	0.16	−30	NC	0	0
U90915	Human clone 23600 cytochrome c oxidase subunit IV “mRNA,” complete cds	2579		−131	NC	0	0	−561	D	1.3	0.16	−309	NC	0	0
X89430	H. sapiens mRNA for methyl CpG binding protein 2	12	*	11	NC	0	0	29	I	˜2.0	0.16	−8	NC	0	0
X94703	H. sapiens rab28 mRNA	6	*	1	NC	0	0	33	I	˜1.9	0.16	−19	NC	0	0
D13413	Human mRNA for tumor-associated 120 kDa nuclear protein “p120,” partial cds(carb	5323		−575	NC	0	0	−937	D	1.2	0.15	−1368	D	1.3	0.31
J04173	Homo sapiens phosphoglycerate mutase (PGAM-B) “mRNA,” complete cds	1250		25	NC	0	0	390	I	1.3	0.15	409	I	1.3	0.16
AF007875	Homo sapiens dolichol monophosphate mannose synthase (DPM1) “mRNA,” partial	94		1	NC	0	0	65	I	1.7	0.15	−45	NC	0	0
D49489	Human mRNA for protein disulfide isomerase-related protein “P5,” complete cds	265		111	NC	0	0	135	1	1.5	0.15	43	NC	0	0
G3075-HT323	Focal Adhesion Kinase — Also Represents: L13616	25		−6	NC	0	0	25	MI	2	0.15	−10	NC	0	0
L14856	Human somatostatin receptor “gene,” complete cds	144		−42	NC	0	0	−60	MD	1.7	0.15	−35	NC	0	0
M14636	Human liver glycogen phosphorylase “mRNA,” complete cds	23		6	NC	0	0	23	I	2	0.15	5	NC	0	0
M31724	Human phosphotyrosyl-protein phosphatase (PTP-1B) “mRNA,” complete cds	74	*	5	NC	0	0	54	MI	1.7	0.15	34	NC	0	0
M67468	Human Fragile X mental retardation 1 FMR-1 “gene,” 3′ “end,” clones BC72 and BC2	1	*	8	NC	0	0	36	I	˜1.9	0.15	−2	NC	0	0
M69181	Human nonmuscle myosin heavy chain-B (MYH10) mRNA, partial cds.	80		−1	NC	0	0	57	I	1.7	0.15	18	NC	0	0
U68494	Human hbc647 mRNA sequence	35	*	−2	NC	0	0	31	I	1.9	0.15	−21	NC	0	0
X00274	Human gene for HLA-DR alpha heavy chain a class II antigen (immune response ge	111		−27	NC	0	0	−48	D	1.8	0.15	31	NC	0	0
X97064	H. sapiens mRNA for Sec23A “isoform,” 2748bp	12	*	1	NC	0	0	28	I	˜2.0	0.15	3	NC	0	0
L14754	Human DNA-binding protein (SMBP2) “mRNA,” complete cds	3	*	31	NC	0	0	33	MI	˜1.8	0.14	32	I	˜1.8	0.13
D00762	Human mRNA for proteasome subunit HC8	199		42	NC	0	0	104	I	1.5	0.14	−83	NC	0	0
D28473	Human T-lymphocyte mRNA for isoleucyl-tRNA “synthetase,” complete cds — Also Re	451		110	NC	0	0	188	I	1.4	0.14	27	NC	0	0
G2743-HT284	Caldesmon “1,” Alt. Splice “4,” Non-Muscle — “Also Repesents: HG2743-HT2843, HG	24	*	−8	NC	0	0	23	I	2	0.14	−13	NC	0	0
M15796	Human cyclin protein “gene,” complete cds	105		14	NC	0	0	68	I	1.6	0.14	41	NC	0	0
M86699	Human kinase (TTK) “mRNA,” complete cds	3	*	2	NC	0	0	34	MI	˜1.8	0.14	2	NC	0	0
M95787	Human 22 kDa smooth muscle protein (SM22) “mRNA,” complete cds	321		−44	NC	0	0	−110	D	1.5	0.14	−73	NC	0	0
U20530	Human bone phosphoprotein spp-24 precursor “mRNA,” complete cds. /gb = U20530	38	*	4	NC	0	0	−31	MD	˜1.9	0.14	−18	NC	0	0
X12953	Human rab2 “mRNA,” YPT1-related and member of ras family	109		−11	NC	0	0	67	I	1.6	0.14	−24	NC	0	0
Z47727	H. sapiens mRNA for RNA polymerase II subunit	193		−9	NC	0	0	103	I	1.5	0.14	−38	NC	0	0
U91327	Human chromosome 12p15 BAC clone CIT987SK-99D8 complete sequence. /gb = U9	689		−127	NC	0	0	239	I	1.3	0.13	−280	D	1.7	0.31
M29536	Human translational initiation factor 2 beta subunit (elF-2-beta) “mRNA,” complete cd	369		−23	NC	0	0	151	I	1.4	0.13	−166	D	1.8	0.3
L49380	Homo sapiens clone B4 transcription factor ZFM1 “mRNA,” complete cds	358		68	NC	0	0	151	I	1.4	0.13	206	I	1.6	0.22
L32976	Human protein kinase (MLK-3) “mRNA,” complete cds	44	*	25	NC	0	0	34	I	1.8	0.13	35	I	1.8	0.14
D26598	Human mRNA for proteasome subunit “HsC10-II,” complete cds	1869		90	NC	0	0	−398	D	1.3	0.13	173	NC	0	0
D89289	Human mRNA for “N-Acetyl-beta-D-glucosaminide,” complete cds	42		−3	NC	0	0	34	MI	1.8	0.13	3	NC	0	0
L40392	Homo sapiens (clone S164) “mRNA,” 3′ end of cds	15	*	11	NC	0	0	23	MI	˜1.9	0.13	−2	NC	0	0
M37075	Human embryonic/atrial myosin light chain (MLC-1-emb/A isoform) gene	35	*	−26	NC	0	0	−39	D	˜1.7	0.13	−5	NC	0	0
M86667	H. sapiens NAP (nucleosome assembly protein) “mRNA,” complete cds	432		−75	NC	0	0	169	I	1.4	0.13	−106	NC	0	0
S79522	ublquitin carboxyl extension protein “[human,” “mRNA,” 540 nt]	2912		−257	NC	0	0	−554	D	1.2	0.13	−896	NC	0	0
U15128	Human “beta-1,2-N-acetylglucosaminyltransferase” II (MGAT2) “gene,” complete cds	50		−14	NC	0	0	−24	D	1.9	0.13	2	NC	0	0
U28963	Human Gps2 (GPS2) “mRNA,” complete cds	197		−20	NC	0	0	−72	D	1.6	0.13	−6	NC	0	0
U41668	Human deoxyguanosine kinase “mRNA,” complete cds	239		−39	NC	0	0	−83	D	1.5	0.13	−33	NC	0	0
U77718	Human desmosome associated protein pinin “mRNA,” complete cds	20	*	−26	NC	0	0	20	I	˜2.0	0.13	−21	NC	0	0
X70944	H. sapiens mRNA for PTB-associated splicing factor — Also Represents: X16850	319		−38	NC	0	0	140	I	1.4	0.13	22	NC	0	0
Y10571	H. sapiens mRNA for dinG gene	0	*	14	NC	0	0	36	I	˜1.8	0.13	12	NC	0	0
D63874	Human mRNA for “HMG-1,” complete cds	711		−145	NC	0	0	236	I	1.3	0.12	−323	D	1.8	0.43
G1612-HT16	Macmarcks	273		32	NC	0	0	118	I	1.4	0.12	204	I	1.7	0.3
M84711	Human v-fos transformation effector protein “(Fte-1),” mRNA complete cds	4735		−403	NC	0	0	−757	D	1.2	0.12	−1075	D	1.3	0.23
L37127	Homo sapiens (clone mf.18) RNA polymerase II “mRNA,” complete cds	270		62	NC	0	0	119	I	1.4	0.12	149	MI	1.6	0.18
D85758	Human mRNA for human protein homologous to DROER “protein,” complete cds	481		38	NC	0	0	173	I	1.4	0.12	39	MI	1.1	0.01
AB000449	Human mRNA for “VRK1,” complete cds	13	*	42	NC	0	0	25	I	˜1.9	0.12	−5	NC	0	0
D29641	Human mRNA for KIAA0052 “gene,” partial cds	30		4	NC	0	0	25	MI	1.8	0.12	−11	NC	0	0
D78129	Human adult (34 year old) Male liver mRNA for squalene “epoxidase,” partial cds. /gb	56		0	NC	0	0	38	I	1.7	0.12	5	NC	0	0
G4518-HT492	Transcription Factor Btf3 Homolog (Gb:M90355)	40		−17	NC	0	0	30	MI	1.8	0.12	4	NC	0	0
J00314	Human beta-tubulin “gene,” clone m40	460		−12	NC	0	0	170	I	1.4	0.12	74	NC	0	0
L24774	Homo sapiens “delta3,” delta2-CoA-isomerase “mRNA,” 3′ end — “Also Represents: Z	217		3	NC	0	0	−74	MD	1.5	0.12	−22	NC	0	0
M93651	Human set “gene,” complete cds	416		59	NC	0	0	158	I	1.4	0.12	−60	NC	0	0
X07384	Human mRNA for GLI protein	−10	*	−20	NC	0	0	43	I	˜1.7	0.12	24	NC	0	0
X83703	H. sapiens mRNA for cytokine inducible nuclear protein	17	*	5	NC	0	0	21	MI	˜1.9	0.12	−14	NC	0	0
Y10511	H. sapiens mRNA for CD176 protein. /gb = Y10511 /ntype = RNA	34		−21	NC	0	0	−36	MD	˜1.7	0.12	−23	NC	0	0
Z35085	H. sapiens mRNA for unknown antigen — Also Represents: D86958	9	*	1	NC	0	0	27	I	˜1.8	0.12	4	NC	0	0
X15341	Human COX Via-L mRNA for cytochrome c oxidase liver-specific subunit Via (EC 1.9	2866		−55	NC	0	0	−516	MD	1.2	0.11	−556	D	1.2	0.13
Y07755	H. sapiens S100A2 “gene,” exon “1,” 2 and 3	1157		70	NC	0	0	−264	D	1.3	0.11	241	I	1.2	0.07
Z50853	H. sapiens mRNA for CLPP	397		3	NC	0	0	145	I	1.4	0.11	111	I	1.3	0.07
D14678	Human mRNA for kinesin-related “protein,” partial cds	7	*	26	NC	0	0	28	I	˜1.7	0.11	13	NC	0	0
D14878	Human mRNA for protein “D123,” complete cds	246		24	NC	0	0	104	I	1.4	0.11	−81	NC	0	0
L33881	Human protein kinase C lota “isoform,” complete cds	23		−2	NC	0	0	20	MI	1.8	0.11	−6	NC	0	0
L40388	Homo sapiens thyroid receptor interactor (TRIP15) “mRNA,” 5′ end of cds. /gb = L403	−7	*	18	I	˜1.0	0	39	I	˜1.6	0.11	2	NC	0	0
L40397	Homo sapiens (clone S311125) “mRNA,” 3′ end of cds	441		117	NC	0	0	158	I	1.4	0.11	−23	NC	0	0
L41939	Homo sapiens (clone FBK III 11c) protein-tyrosine kinase (DRT) “mRNA,” complete c	65	*	30	NC	0	0	40	MI	1.6	0.11	20	NC	0	0
M14123	neutral protease large subunit from Human endogenous retrovirus HERV-K10. /gb = M	35	*	−22	NC	0	0	−28	D	˜1.7	0.11	4	NC	0	0
U09584	Human PL6 protein (PL6) “mRNA,” complete cds	133		−26	NC	0	0	−50	MD	1.6	0.11	−16	NC	0	0
X54941	H. sapiens ckshs1 mRNA for Cks1 protein homologue	814		94	NC	0	0	−198	MD	1.3	0.11	87	NC	0	0
X58528	Human PMP70 mRNA for a peroxisomal membrane protein — “Also Represents: M81	11	*	4	NC	0	0	25	I	˜1.8	0.11	−5	NC	0	0
Y13115	Homo sapiens mRNA for serine/threonine protein kinase SAK	43	*	10	NC	0	0	31	I	1.7	0.11	−14	NC	0	0
Y00486	adenine phosphoribosyltransferase (aprt) gene extracted from Human APRT gene to	842		10	NC	0	0	235	MI	1.3	0.1	246	I	1.3	0.11
D38122	Human mRNA for Fas “ligand,” complete cds	33		−16	NC	0	0	−30	D	˜1.7	0.1	−27	D	˜1.7	0.09
D13435	Human mRNA for PIG-F (phosphatidyl-inositol-glycan class “F),” complete cds	25		30	NC	0	0	19	I	1.8	0.1	14	NC	0	0
D25274	Human randomly sequenced mRNA	733		−7	NC	0	0	210	I	1.3	0.1	68	NC	0	0
D86979	Human mRNA for KIAA0226 “gene,” complete cds	114		23	NC	0	0	57	MI	1.5	0.1	−32	NC	0	0
L10678	Human profilin II “mRNA,” complete cds	588		74	NC	0	0	184	I	1.3	0.1	135	NC	0	0
M37755	Human pregnancy-specific beta-1-glycoprotein gene PSGGA	49		2	NC	0	0	31	I	1.6	0.1	8	NC	0	0
M86934	Human GS1 (protein of unknown function) “mRNA,” complete cds	95		−8	NC	0	0	−37	D	1.6	0.1	−19	NC	0	0
S78234	nuc2 homolog “[human,” “fibroblasts,” “mRNA,” 3320 nt]	25	*	−3	NC	0	0	20	MI	1.8	0.1	−13	NC	0	0
X65633	H. sapiens ACTH-R gene for adrenocorticotropic hormone receptor	−48	*	31	NC	0	0	77	I	˜1.5	0.1	68	MI	˜1.0	0
U46570	Human tetratricopeptide repeat protein (tpr1) “mRNA,” complete cds	450		−144	NC	0	0	−114	D	1.3	0.09	−191	D	1.7	0.29
D13315	Human mRNA for lactoyl glutathione lyase	504		7	NC	0	0	155	I	1.3	0.09	−176	D	1.5	0.19
D12620	Human mRNA for cytochrome P-450LTBV — Also Represents: U02388	−10	*	18	NC	0	0	41	I	˜1.5	0.09	41	I	˜1.6	0.09
Z93784	Homo sapiens DNA sequence from PAC 398C22 on chromosome 22q11.2-qter. Con	125		43	NC	0	0	59	MI	1.5	0.09	56	MI	1.4	0.08
L19183	Human MAC30 “mRNA,” 3′ end	35		14	NC	0	0	24	MI	1.7	0.09	17	I	1.5	0.05
D13643	Human mRNA for KIAA0018 “gene,” complete cds	227		64	NC	0	0	87	MI	1.4	0.09	70	NC	0	0
D86957	Human mRNA for KIAA0202 “gene,” partial cds	31	*	−18	NC	0	0	22	I	1.7	0.09	3	NC	0	0
G3514-HT370	Tropomyosin “Tm30nm,” Cytoskeletal	910		119	NC	0	0	224	I	1.2	0.09	−27	NC	0	0
J04543	Human synexin “mRNA,” complete cds	136		15	NC	0	0	61	I	1.4	0.09	−15	NC	0	0
L08246	Human myeloid cell differentiation protein (MCL1) mRNA	210		−13	NC	0	0	85	I	1.4	0.09	−6	NC	0	0
L10338	Human sodium channel beta-1 subunit (SCN1B) “mRNA,” complete cds — “Also Repr	117		−14	NC	0	0	−40	MD	1.5	0.09	−14	NC	0	0
L13689	Human prot-oncogene (BMI-1) “mRNA,” complete cds	7	*	−4	NC	0	0	26	MI	˜1.7	0.09	6	NC	0	0
L19779	Homo sapiens histone H2A.2 “mRNA,” complete cds	134		81	NC	0	0	60	MI	1.4	0.09	30	NC	0	0
M22632	Human mitochondrial aspartate aminotransferase “mRNA,” complete cds	517		81	NC	0	0	157	MI	1.3	0.09	59	NC	0	0
M76665	Human 11-beta-hydroxysteroid dehydrogenase (HSD11) gene	48		−2	NC	0	0	−20	D	1.7	0.09	−13	NC	0	0
M99439	Human transducin-like enhancer protein (TLE4) “mRNA,” 3′ end	26	*	2	NC	0	0	20	MI	1.8	0.09	2	NC	0	0
U04847	Human ini1 “mRNA,” complete cds	32		−19	NC	0	0	−37	D	˜1.6	0.09	−19	NC	0	0
U38175	Human HuR RNA binding protein (HuR) “mRNA,” complete cds	107		−34	NC	0	0	−38	D	1.6	0.09	−2	NC	0	0
U38276	Human semaphorin III family homolog “mRNA,” complete cds	128	*	−18	NC	0	0	−43	MD	1.5	0.09	−17	NC	0	0
U38291	Human microtubute-associated protein 1a (MAP1A) genomic sequence	15	*	−1	NC	0	0	20	I	˜1.7	0.09	20	NC	0	0
U40282	Human integrin-linked kinase (ILK) “mRNA,” complete cds	446		−56	NC	0	0	−114	D	1.3	0.09	20	NC	0	0
U90904	Human clone 23773 mRNA sequence	217		−54	NC	0	0	83	I	1.4	0.09	−49	NC	0	0
X53793	H. sapiens ADE2H1 mRNA showing homologies to SAICAR synthetase and AIR carb	334		16	NC	0	0	112	MI	1.3	0.09	−50	NC	0	0
X64330	H. sapiens mRNA for ATP-citrate lyase	828		161	NC	0	0	−184	D	1.3	0.09	149	NC	0	0
X80910	H. sapiens PPP1CB mRNA	14	*	0	NC	0	0	20	MI	˜1.7	0.09	−11	NC	0	0
X81889	H. sapiens mRNA for p0071 protein	0	*	10	NC	0	0	32	I	˜1.6	0.09	19	NC	0	0
X98743	H. sapiens mRNA for RNA helicase (Myc-regulated dead box protein)	88	*	−28	NC	0	0	45	I	1.5	0.09	−5	NC	0	0
Y12393	H. sapiens mRNA for SRP1-like “protein,” partial — Also Represents: AB002533	45		−10	NC	0	0	28	MI	1.6	0.09	1	NC	0	0
Z24725	H. sapiens mitogen inducible gene “mig-2,” complete CDS	170		48	NC	0	0	72	I	1.4	0.09	52	NC	0	0
Z48501	H. sapiens mRNA for polyadenylate binding protein II. /gb = Z48501 /ntype = RNA — “Als	1105		−192	NC	0	0	260	I	1.2	0.09	−69	NC	0	0
D14812	Human mRNA for KIAA0026 “gene,” complete cds	695		−29	NC	0	0	183	I	1.3	0.08	−199	D	1.4	0.14
Y10659	H. sapiens IL-13Ra mRNA	10	*	8	NC	0	0	23	I	˜1.7	0.08	27	MI	˜1.9	0.13
L08132	Human voltage-dependent anion channel isoform 1 (VDAC) “mRNA,” complete cds	581		130	NC	0	0	161	I	1.3	0.08	159	I	1.3	0.08
G3971-HT424	Transcription Factor (Gb:L32162)	14	*	−17	NC	0	0	20	MI	˜1.7	0.08	13	MI	˜1.3	0.03
U63825	Human hepatitis delta antigen interacting protein A (dipA) “mRNA,” complete cds	413		−31	NC	0	0	−100	MD	1.3	0.08	62	MI	1.2	0.03
D11094	Human mRNA for “MSS1,” complete cds	246		95	NC	0	0	85	MI	1.3	0.08	−40	NC	0	0
D84294	Human mRNA for “TPRDI,” complete cds	7	*	−5	NC	0	0	25	I	˜1.6	0.08	3	NC	0	0
HG662-HT662	Epstein-Barr Virus Small Rna-Associated Protein	622		22	NC	0	0	159	I	1.3	0.08	−101	NC	0	0
L07493	Homo sapiens replication protein A 14 kDa subunit (RPA) “mRNA,” complete cds	54	*	4	I	1.1	0	30	I	1.6	0.08	4	I	1.1	0
L23808	Human metalloproteinase (HME) “mRNA,” complete cds	−10	*	9	NC	0	0	40	I	˜1.5	0.08	17	I	˜1.0	0
M30496	Human ublquitin carboxyl-terminal hydrolase (PGP “9.5,” UCH-L3) isozyme L3 “mRN	102		−10	NC	0	0	46	MI	1.5	0.08	−33	NC	0	0
U24704	Human antisecretory factor-1 “mRNA,” complete cds	376		−22	NC	0	0	−95	D	1.3	0.08	−42	NC	0	0
U34252	Human gamma-aminobutyraldehyde dehydrogenase “mRNA,” complete cds	173		−22	NC	0	0	−54	D	1.5	0.08	−23	NC	0	0
U35451	Human heterochromatin protein p25 “mRNA,” complete cds	58		−3	NC	0	0	30	MI	1.5	0.08	−4	NC	0	0
U42412	Human 5′-AMP-activated protein “kinase,” gamma-1 subunit “mRNA,” complete cds	256		−13	NC	0	0	−70	D	1.4	0.08	21	NC	0	0
U73704	Homo sapiens 48 kDa FKBP-associated protein FAP48 “mRNA,” complete cds	17	*	1	NC	0	0	18	I	˜1.7	0.08	−3	NC	0	0
X04347	Human liver mRNA fragment DNA binding protein UPI homologue (C-terminus) — “Als	1526		−43	NC	0	0	313	I	1.2	0.08	−98	NC	0	0
X05360	Human CDC2 gene involved in cell cycle control	69	*	26	NC	0	0	35	I	1.5	0.08	−13	NC	0	0
X74987	H. sapiens mRNA for 2′-5′ oligoadenylate binding protein — Also Represents: X76388	7	*	21	NC	0	0	26	MI	˜1.6	0.08	3	NC	0	0
X98482	H. sapiens TNNT2 gene exon 11 /gb = X98482 /ntype = DNA /annot = mRNA	1432		105	NC	0	0	275	I	1.2	0.07	729	I	1.5	0.36
AB004884	Human mRNA for “PKU-alpha,” partial cds. /gb = AB004884 /ntype = RNA	62		−18	NC	0	0	30	MI	1.5	0.07	−36	D	2.3	0.26
		104		49	NC	0	0	42	MI	1.4	0.07	−6	NC	0	0
D86550	Human mRNA for serine/threonine protein “kinase,” complete cds	40	*	−23	NC	0	0	21	I	1.5	0.07	−5	NC	0	0
D87466	Human mRNA for KIAA0276 “gene,” partial cds	9	*	4	NC	0	0	23	I	˜1.6	0.07	−2	NC	0	0
G4716-HT515	Guanosine 5′-Monophosphate Synthase	401		−21	NC	0	0	115	MI	1.3	0.07	−25	NC	0	0
M19507	Human myeloperoxidase “mRNA,” complete cds	30		−34	NC	0	0	−33	D	˜1.5	0.07	−22	NC	0	0
S66793	X-arrestin = S-antigen homolog “[human,” “retina,” “mRNA,” 1314 nt]	31	*	−25	NC	0	0	−20	D	˜1.6	0.07	−19	NC	0	0
U03105	Human B4-2 protein “mRNA,” complete cds	30		−2	NC	0	0	−25	D	˜1.5	0.07	−19	NC	0	0
U15172	Human Nip1 (NIP1) “mRNA,” complete cds	105	*	−13	NC	0	0	−34	MD	1.5	0.07	−8	NC	0	0
U43077	Human CDC37 homolog “mRNA,” complete cds	746		−79	NC	0	0	−146	D	1.2	0.07	−5	NC	0	0
U46751	Human phosphotyrosine independent ligand p62 for the Lck SH2 domain “mRNA,” c	2103		−350	NC	0	0	−327	D	1.2	0.07	−275	NC	0	0
X52022	H. sapiens RNA for type VI collagen alpha3 chain	1509		−247	NC	0	0	291	I	1.2	0.07	−273	NC	0	0
M64716	Human ribosomal protein S25 “mRNA,” complete cds	3426		−580	NC	0	0	−419	D	1.1	0.06	−1074	D	1.5	0.38
M91670	Human ublquitin carrier protein (E2-EPF) “mRNA,” complete cds	903		213	NC	0	0	172	I	1.2	0.06	418	I	1.5	0.24
U87459	Human autoimmunogenic cancer/testis antigen NY-ESO-1 “mRNA,” complete cds	2224		−392	NC	0	0	−306	D	1.2	0.06	−413	D	1.2	0.11
		8864		−200	NC	0	0	844	I	1.1	0.06	911	I	1.1	0.07
		−14	*	34	NC	0	0	42	I	˜1.4	0.06	25	NC	0	0
		124		48	NC	0	0	−37	D	1.4	0.06	−11	NC	0	0
D43950	Human mRNA for KIAA0098 “gene,” partial cds	1091		148	NC	0	0	203	I	1.2	0.06	−29	NC	0	0
G4102-HT437	N-Ethylmaleimide-Sensitive Factor	32		−3	NC	0	0	18	I	1.6	0.06	−5	NC	0	0
J04988	Human 90 kD heat shock protein “gene,” complete cds	2184		−335	NC	0	0	340	I	1.2	0.06	−692	NC	0	0
J05106	Human (clone pA3) protein disulfide isomerase related protein (ERp72) “mRNA,” com	4	*	20	NC	0	0	26	I	˜1.5	0.06	11	I	˜1.0	0
L05425	Homo sapiens autoantigen “mRNA,” complete cds	53		−34	NC	0	0	24	MI	1.4	0.06	−20	NC	0	0
L24203	Homo sapiens ataxia-telanglectasia group D-associated protein “mRNA,” complete c	−2	*	30	NC	0	0	31	MI	˜1.4	0.06	5	NC	0	0
L42542	Human RLIP76 protein “mRNA,” complete cds	48		−13	NC	0	0	23	I	1.5	0.06	−18	NC	0	0
L49229	Homo sapiens retinoblastoma susceptibility protein (RB1) “gene,” with a 3 bp deletion	0	*	3	NC	0	0	29	MI	˜1.5	0.06	−6	NC	0	0
M74096	Human long chain acyl-CoA dehydrogenase (ACADL) “mRNA,” complete cds	−2	*	3	NC	0	0	31	I	˜1.4	0.06	6	NC	0	0
S77763	nuclear factor erythroid 2 isoform t = basic leucine zipper protein (alternatively “spliced	27	*	−2	NC	0	0	−42	D	˜1.4	0.06	−16	NC	0	0
U26424	Human Ste20-like kinase (MST2) “mRNA,” complete cds	8	*	2	NC	0	0	21	I	˜1.5	0.06	2	NC	0	0
U45982	Human G protein-coupled receptor GPR-9-6 “gene,” complete cds	81	*	−19	NC	0	0	−25	MD	1.4	0.06	−20	NC	0	0
U50196	Human adenosine kinase “mRNA,” complete cds	98		12	NC	0	0	38	MI	1.4	0.06	−27	NC	0	0
U60205	Human methyl sterol oxidase (ERG25) “mRNA,” complete cds	29	*	8	NC	0	0	−31	D	˜1.5	0.06	22	NC	0	0
X66087	H. sapiens a-myb mRNA	5	*	7	NC	0	0	24	I	˜1.4	0.06	1	NC	0	0
X69962	H. sapiens FMR-1 mRNA — “Also Represents: S65791, L29074_ma2, L29074_ma4, L	5	*	−1	NC	0	0	25	I	˜1.5	0.06	−1	NC	0	0
X77794	H. sapiens mRNA for cyclin G1	143		33	NC	0	0	48	I	1.3	0.06	−15	NC	0	0
X99459	H. sapiens mRNA for sigma 3B protein	226		50	NC	0	0	63	MI	1.3	0.05	126	I	1.6	0.17
J03827	Y box binding protein-1 (YB-1) mRNA	2530		−366	NC	0	0	317	I	1.1	0.05	−550	D	1.3	0.15
U70439	Human silver-stainable protein SSP29 “mRNA,” complete cds — Also Represents: Y0	1273		−262	NC	0	0	201	I	1.2	0.05	−271	MD	1.3	0.1
D63851	Human mRNA for uno-18 “homologue,” complete cds	61		11	NC	0	0	25	I	1.4	0.05	30	I	1.5	0.07
U52101	Human YMP “mRNA,” complete cds	1093		−65	NC	0	0	−154	D	1.2	0.05	198	I	1.2	0.06
D80012	Human mRNA for KIAA0190 “gene,” partial cds	106		21	NC	0	0	37	I	1.4	0.05	6	NC	0	0
HG110-HT110	Heterogeneous Nuclear Ribonucleoprotein A/B — Also Represents: U76713	1109		−1	NC	0	0	178	I	1.2	0.05	−153	NC	0	0
G2825-HT294	Het Transforming Gene	111		−14	NC	0	0	38	I	1.3	0.05	18	NC	0	0
L05424	CD44 gene (cell surface glycoprotein CD44) extracted from Human hyaluronate rece	−2	*	4	NC	0	0	30	I	˜1.4	0.05	−2	NC	0	0
L36645	Homo sapiens receptor protein-tyrosine kinase (HEK8) “mRNA,” complete cds	13	*	11	NC	0	0	16	MI	˜1.5	0.05	1	NC	0	0
S67970	ZNF75 = KRAB zinc finger “[human,” lung “fibroblast,” “mRNA,” 1563 nt]	−2	*	5	NC	0	0	29	I	˜1.4	0.05	−8	NC	0	0
U14747	Human visinin-like peptide 1 homolog “mRNA,” complete cds	−16	*	10	NC	0	0	42	I	˜1.3	0.05	16	NC	0	0
U46025	Human translation initiation factor elF-3 p110 subunit “gene,” complete cds	1477		−171	NC	0	0	212	I	1.1	0.05	76	NC	0	0
U47621	Human nucleotar autoantigen No55 “mRNA,” complete cds	207		9	NC	0	0	−46	D	1.3	0.05	−5	NC	0	0
U53446	Human mitogen-responsive phosphoprotein DOC-2 “mRNA,” complete cds	51		−26	NC	0	0	−16	D	1.4	0.05	−23	NC	0	0
X03473	Human gene for histone H1(0)	−7	*	22	I	˜1.0	0	34	I	˜1.4	0.05	19	NC	0	0
X87241	H. sapiens mRNA for hFat protein	96		−19	NC	0	0	34	I	1.4	0.05	41	NC	0	0
U79258	Human clone 23732 “mRNA,” partial cds.	2	*	2	NC	0	0	24	I	˜1.3	0.04	49	I	˜2.5	0.35
L08666	Homo sapiens porin (por) “mRNA,” complete cds and truncated cds	627		101	NC	0	0	110	MI	1.2	0.04	210	I	1.3	0.12
S81914	IEX-1 = radiation-inducible immediate-early gene “[human,” “placenta,” mRNA “Partial	644		0	NC	0	0	−104	D	1.2	0.04	−131	MD	1.3	0.07
Z23064	H. sapiens mRNA gene for hnRNP G protein	267		42	NC	0	0	56	I	1.2	0.04	75	MI	1.3	0.06
L13923	Homo sapiens fibrillin “mRNA,” complete cds	39		1	NC	0	0	16	MI	1.4	0.04	10	MI	1.3	0.02
D16815	Human mRNA for “EAR-1r,” complete cds	0	*	−4	NC	0	0	26	I	˜1.3	0.04	1	NC	0	0
G1879-HT191	Ras-Like Protein Tc10	37		−25	NC	0	0	16	MI	1.4	0.04	−21	NC	0	0
L11284	Homosapiens ERK activator kinase (MEK1) mRNA	170		14	NC	0	0	41	MI	1.2	0.04	45	NC	0	0
L22009	Human hnRNP H “mRNA,” complete cds	212		−90	NC	0	0	51	I	1.2	0.04	−21	NC	0	0
L32179	Human arylacetamide deacetylase “mRNA,” complete cds	26	*	−5	NC	0	0	−24	D	˜1.3	0.04	−12	NC	0	0
M61827	Human leukoslalin (CD43) “gene,” complete cds — “Also Represents: J04168, J04536	81		−7	NC	0	0	−21	D	1.4	0.04	−2	NC	0	0
U03494	Human transcription factor LSF “mRNA,” complete cds	27	*	−12	NC	0	0	−22	MD	˜1.4	0.04	−17	NC	0	0
U38545	Human ARF-activated phosphatidylcholine-specific phospholipase D1a (hPLD1) “mR	25	*	−31	NC	0	0	−40	D	˜1.3	0.04	−15	NC	0	0
U78525	Human eukaryotic translation initiation factor (elF3) “mRNA,” complete cds	736		−66	NC	0	0	113	I	1.2	0.04	−86	NC	0	0
X02761	Human mRNA for fibronectin (FN precursor) — Also Represents: HG3044-HT2527	1142		−177	NC	0	0	160	I	1.1	0.04	−152	NC	0	0
X80692	H. sapiens ERK3 mRNA	174		−62	NC	0	0	44	I	1.3	0.04	−49	NC	0	0
X93017	H. sapiens nox2 gene (exon 2). /gb = X93017 /ntype = DNA /annot = exon	−10	*	−1	NC	0	0	36	I	˜1.3	0.04	6	NC	0	0
M92934	Human connective tissue growth “factor,” complete cds	914		−174	NC	0	0	−112	D	1.1	0.03	−401	D	1.8	0.45
X97335	H. sapiens mRNA for kinase A anchor protein	25	*	14	NC	0	0	10	I	1.4	0.03	32	I	2.3	0.23
S58544	75 kda infertility-related sperm protein “[human,” “testis,” mRNA “Partial,” 2427 nt]	27		−11	NC	0	0	−20	D	˜1.3	0.03	−22	D	˜1.3	0.04
AF002020	Homo sapiens Niemann-Pick C disease protein (NPC1) “mRNA,” complete cds. /gb =	119		−7	NC	0	0	27	MI	1.2	0.03	24	NC	0	0
D42043	Human mRNA for KIAA0084 “gene,” partial cds	202		19	NC	0	0	41	MI	1.2	0.03	0	NC	0	0
D87443	Human mRNA for KIAA0254 “gene,” complete cds	34		−8	NC	0	0	12	I	1.3	0.03	−13	NC	0	0
M19645	Human 78 kdalton glucose-regulated protein (GRP78) “gene,” complete cds	312		10	NC	0	0	57	MI	1.2	0.03	−32	NC	0	0
U01038	Human pLK “mRNA,” complete cds	562		−55	NC	0	0	−78	D	1.2	0.03	28	NC	0	0
U52827	Human Crl-du-chat region “mRNA,” clone NIBB11	23	*	−1	NC	0	0	10	I	1.4	0.03	−5	NC	0	0
U63542	Human putative FAP protein “mRNA,” partial cds	4	*	6	NC	0	0	22	MI	˜1.3	0.03	−9	NC	0	0
U78180	Human sodium channel 2 (hBNaC2) “mRNA,” alternatively “spliced,” complete cds	−28	*	20	NC	0	0	52	MI	˜1.2	0.03	9	NC	0	0
U97018	Homo sapiens echinoderm microtubule-associated protein homolog HuEMAP “mRNA	1	*	22	NC	0	0	24	MI	˜1.3	0.03	31	NC	0	0
X05409	Human RNA for mitochondrial aldehyde dehydrogenase I ALDHT (EC 1.2.1.3)	152		23	NC	0	0	30	I	1.2	0.03	−68	NC	0	0
Y12856	H. sapiens mRNA for AMP-activated protein kinase “alpha-1,” partial. /gb = Y12856 /nt	26	*	9	NC	0	0	11	I	1.4	0.03	10	NC	0	0
U13991	Human TATA-binding protein associated factor 30 kDa subunit (tafll30) “mRNA,” com	419		39	NC	0	0	−51	D	1.1	0.02	208	I	1.5	0.19
X79882	H. sapiens lrp mRNA	185	*	−22	NC	0	0	31	I	1.2	0.02	77	MI	1.4	0.09
U35048	Human TSC-22 protein “mRNA,” complete cds	138		0	NC	0	0	−20	D	1.2	0.02	−23	D	1.2	0.02
D79994	Human mRNA for KIAA0172 “gene,” partial cds	6	*	12	NC	0	0	18	I	˜1.2	0.02	8	NC	0	0
G1116-HT111	Proliferating-Cell Nucleolar “Antigen,” 120 Kda	210		11	NC	0	0	34	I	1.2	0.02	35	NC	0	0
G3627-HT383	Calcium “Channel,” “Voltage-Gated,” Beta 1 “Subunit,” L “Type,” Alt. Splice “2,” Skel	−17	*	33	NC	0	0	40	MI	˜1.2	0.02	26	MI	˜1.0	0
L10910	Homo sapiens splicing factor (CC1.3) “mRNA,” complete cds	10	*	0	NC	0	0	15	MI	˜1.2	0.02	−3	NC	0	0
L36463	Homo sapiens ras inhibitor (Rin1) “mRNA,” complete cds	23	*	−24	NC	0	0	−44	MD	˜1.2	0.02	−31	NC	0	0
M76125	Human tyrosine kinase receptor (axl) “mRNA,” complete cds — “Also Represents: HG	80		16	NC	0	0	19	I	1.2	0.02	14	NC	0	0
U17033	Human 180 kDa transmembrane PLA2 receptor “mRNA,” complete cds	1	*	−11	NC	0	0	23	I	˜1.2	0.02	3	NC	0	0
U17989	Human nuclear autoantigen GS2NA “mRNA,” complete cds	2	*	−6	NC	0	0	22	I	˜1.2	0.02	11	NC	0	0
U20938	Human lymphocyte dihydropyrimidine dehydrogenase “mRNA,” complete cds.	5	*	15	NC	0	0	20	I	˜1.2	0.02	5	NC	0	0
U28488	Human putative G protein-coupled receptor (AZ3B) “mRNA,” complete cds — Also Re	−3	*	23	I	˜1.0	0	27	I	˜1.2	0.02	−2	NC	0	0
U37690	Human RNA polymerase II subunit (hsRPB10) “mRNA,” complete cds	1292		−37	NC	0	0	−97	D	1.1	0.02	103	NC	0	0
U46692	Human cystatin B “gene,” complete cds	342		−33	NC	0	0	−39	MD	1.1	0.02	1	NC	0	0
U81006	Human p76 “mRNA,” complete cds	133		−13	NC	0	0	24	I	1.2	0.02	−34	NC	0	0
U94831	Human multispanning membrane protein “mRNA,” complete cds. /gb = U94831 /ntype	277		32	NC	0	0	40	I	1.1	0.02	34	NC	0	0
X74330	H. sapiens mRNA for DNA primase (subunit p48)	83	*	14	NC	0	0	17	I	1.2	0.02	−2	NC	0	0
M76378	Human cysteine-rich protein (CRP) gene	1374		−33	NC	0	0	−76	D	1.1	0.01	338	I	1.2	0.1
D25538	Human mRNA for KIAA0037 “gene,” complete cds	−4	*	6	NC	0	0	26	I	˜1.1	0.01	15	I	˜1.0	0
D86968	Human mRNA for KIAA0213 “gene,” partial cds	20	*	−21	NC	0	0	4	I	1.2	0.01	9	NC	0	0
D86969	Human mRNA for KIAA0215 “gene,” complete cds	3	*	5	NC	0	0	19	I	˜1.1	0.01	7	NC	0	0
D89501	Human PBI “gene,” complete cds	21		−20	D	˜1.1	0	−26	D	˜1.1	0.01	−18	NC	0	0
G2480-HT257	Fmlp-Related Receptor I	23	*	6	NC	0	0	−10	D	˜1.2	0.01	1	NC	0	0
L06845	Human cysteinyl-tRNA synthetase “mRNA,” partial cds	406		−69	NC	0	0	−39	I	1.1	0.01	40	NC	0	0
L35035	Homo sapiens ribose 5-phosphate isomerase (RPI) mRNA	14	*	−2	NC	0	0	8	I	˜1.1	0.01	3	I	˜1.0	0
L49173	Human OCP2 “gene,” partial cds. /gb = L49173 /ntype = DNA /annot = CDS	8	*	21	NC	0	0	14	I	˜1.1	0.01	36	NC	0	0
M55153	Human transglutaminase (TGase) “mRNA,” complete cds	186		−60	NC	0	0	−21	D	1.1	0.01	−55	NC	0	0
M96740	Human NSCL-2 gene sequence	0	*	7	NC	0	0	22	I	˜1.1	0.01	16	NC	0	0
S72869	H4(D10S170) = putative cytoskeletal protein “[human,” “thyroid,” “mRNA,” 3011 nt]	−12	*	14	NC	0	0	34	I	˜1.1	0.01	26	I	˜1.0	0
U06863	Human follistatin-related protein precursor “mRNA,” complete cds	79		−10	NC	0	0	10	MI	1.1	0.01	−25	NC	0	0
U31342	Human nucleobindin gene	96	*	6	NC	0	0	11	MD	1.1	0.01	50	NC	0	0
U33052	Human “lipid-activated,” protein kinase PRK2 “mRNA,” complete cds — Also Represe	−10	*	19	NC	0	0	32	I	˜1.1	0.01	14	NC	0	0
U70322	Human transportin (TRN) “mRNA,” complete cds.	121		−34	NC	0	0	18	I	1.2	0.01	−62	NC	0	0
X16416	Human c-abl mRNA encoding p150 protein	426		−13	NC	0	0	−31	I	1.1	0.01	−15	NC	0	0
X16901	Human mRNA for RAP30 subunit of transcription initiation factor RAP30/74	7	*	4	I	˜1.0	0	15	I	˜1.1	0.01	15	NC	0	0
X79781	H. sapiens ray mRNA	81		−10	NC	0	0	7	MI	1.1	0.01	−10	NC	0	0
Z24459	exon2A from H. sapiens MTCP1 “gene,” exons 2A to 7 (and joined mRNA). /gb = Z244	22		−23	NC	0	0	−27	D	˜1.1	0.01	−17	NC	0	0
X17025	Human homolog of yeast IPP isomerase	109		−54	NC	0	0	38	NC	0	0	−101	MD	˜5.5	1.67
X59892	H. sapiens mRNA for IFN-inducible gamma2 protein	874		76	NC	0	0	−65	NC	0	0	1242	I	2.4	1.63
X15940	Human mRNA for ribosomal protein L31	5905		−904	NC	0	0	153	NC	0	0	−2823	D	1.9	1.43
M24283	Human major group rhinovirus receptor (HRV) “mRNA,” complete cds	−8	*	4	NC	0	0	−6	NC	0	0	94	I	˜4.3	1.18
X85237	H. sapiens mRNA for splicing factor SF3a120	52	*	−3	NC	0	0	50	NC	0	0	141	I	3.7	1.18
U31628	Human interleukin-15 receptor alpha chain precursor (IL15RA) “mRNA,” complete cd	36	*	51	NC	0	0	76	NC	0	0	100	I	3.8	1.02
X84213	H. sapiens BAK mRNA for BCl-2 homologue — “Also Represents: U16811, U23765”	57		20	NC	0	0	25	NC	0	0	132	MI	3.3	0.95
M37435	Human macrophage-specific colony-stimulating factor (CSF-1) “mRNA,” complete cd	103		56	NC	0	0	94	NC	0	0	197	I	2.9	0.93
G3494-HT368	Nuclear Factor Ni-116	352		39	NC	0	0	92	NC	0	0	441	I	2.3	0.84
M15841	Human U2 small nuclear RNA-associated B″ antigen “mRNA,” complete cds	129		−26	NC	0	0	−9	NC	0	0	−92	D	3.4	0.84
Z31695	H. sapiens mRNA for 43 kDa inositol polyphosphate 5-phosphatase.	79		−42	NC	0	0	−29	NC	0	0	−61	MD	˜3.9	0.84
X56932	H. sapiens mRNA for 23 kD highly basic protein	11210		−2597	NC	0	0	−2411	NC	0	0	−3671	D	1.5	0.76
M58286	Homo sapiens tumor necrosis factor receptor “mRNA,” complete cds — “Also Represe	255		102	NC	0	0	59	NC	0	0	330	I	2.3	0.75
X97748	H. sapiens PTX3 gene promotor region. /gb = X97748 /ntype = DNA /annot = mRNA — Als	90		−26	NC	0	0	17	NC	0	0	−64	D	3.5	0.71
Z35278	H. sapiens PEBP2aC1 acute myeloid leukaemia mRNA	55		18	NC	0	0	26	NC	0	0	108	I	3	0.71
L40379	Homo sapiens thyroid receptor interactor (TRIP10) “mRNA,” 3′ end of cds	45		−2	NC	0	0	27	NC	0	0	88	I	3	0.64
U18009	Human chromosome 17q21 mRNA clone LF113	30	*	34	NC	0	0	22	NC	0	0	64	MI	3.1	0.6
U85011	Human preferentially expressed antigen of melanoma (PRAME) “mRNA,” complete c	37	*	35	NC	0	0	30	NC	0	0	74	I	3	0.6
L09604	Homo sapiens differentiation-dependent A4 protein “mRNA,” complete cds	1021		129	NC	0	0	157	NC	0	0	752	I	1.7	0.57
L33243	Homo sapiens polycystic kidney disease 1 protein (PKD1) “mRNA,” complete cds	60		−28	NC	0	0	−23	NC	0	0	−57	MD	˜3.0	0.53
M75126	Human hexokinase 1 (HK1) “mRNA,” complete cds	548		150	NC	0	0	272	NC	0	0	464	I	1.8	0.53
U30521	Human P311 HUM -3.1 “mRNA,” complete cds	46		23	NC	0	0	13	NC	0	0	80	MI	2.8	0.53
Z14093	H. sapiens mRNA for branched chain decarboxylase alpha subunit	−51	*	77	NC	0	0	40	NC	0	0	102	MI	˜2.5	0.51
X95735	H. sapiens mRNA for zyxin 2	752		11	NC	0	0	−6	NC	0	0	560	I	1.7	0.5
D38073	Human mRNA for hRlf beta subunit (p102 “protein),” complete cds	143		36	NC	0	0	148	NC	0	0	169	MI	2.2	0.48
L29277	Homo sapiens DNA-binding protein (APRF) “mRNA,” complete cds	52		39	NC	0	0	37	NC	0	0	83	I	2.6	0.48
X90978	H. sapiens mRNA for an acute myeloid leukaemia protein (1793bp)	40	*	32	NC	0	0	21	NC	0	0	68	I	2.7	0.46
X97058	H. sapiens mRNA for P2Y6 receptor	5	*	42	NC	0	0	18	NC	0	0	52	I	˜2.9	0.46
D14530	Human homolog of yeast ribosomal protein “S28,” complete cds	3768		−302	NC	0	0	−687	NC	0	0	−1242	D	1.5	0.45
L20010	Human HCF1 gene related mRNA sequence	176		−25	NC	0	0	31	NC	0	0	189	I	2.1	0.45
J00220	IGHA1 gene extracted from Human Ig germline H-chain G-E-A region A: gamma-3 5′	−13	*	32	NC	0	0	18	NC	0	0	66	MI	˜2.6	0.44
M15205	Human thymidine kinase “gene,” complete “cds,” with clustered Alu repeats in the int	275		101	NC	0	0	37	NC	0	0	249	I	1.9	0.42
U58681	Human neurogenic basic-helix-loop-helix protein (NeuroD2) “gene,” complete cds.	56	*	−47	NC	0	0	−34	NC	0	0	−45	D	˜2.8	0.41
X86779	H. sapiens mRNA for FAST kinase	171		67	NC	0	0	70	NC	0	0	173	I	2	0.4
U18934	Human receptor tyrosine kinase (DTK) “mRNA,” complete cds	145		139	NC	0	0	106	NC	0	0	151	I	2	0.39
X14787	Human mRNA for thrombospondin	303		−44	NC	0	0	−140	NC	0	0	−154	D	2	0.39
L17131	Human high mobility group protein (HMG-I(Y)) gene exons “1-8,” complete cds	1474		−78	NC	0	0	120	NC	0	0	754	I	1.5	0.37
X13546	put. HMG-17 protein gene extracted from Human HMG-17 gene for non-histone chro	2008		−98	NC	0	0	20	NC	0	0	−700	D	1.5	0.37
X74301	H. sapiens mRNA for MHC class II transactivator — Also Represents: U18259	−1	*	4	NC	0	0	−4	NC	0	0	52	I	˜2.6	0.37
X86691	H. sapiens mRNA for 218kD MI-2 protein	268		−84	NC	0	0	41	NC	0	0	−136	D	2	0.37
X77584	H. sapiens mRNA for ATL-derived factor/thiredoxin	1704		−216	NC	0	0	−229	NC	0	0	−605	D	1.6	0.36
G4704-HT514	Glial Growth Factor 2	54		−23	NC	0	0	−8	NC	0	0	−39	D	˜2.7	0.35
G3364-HT354	Ribosomal Protein L37	5500		−873	NC	0	0	−764	NC	0	0	−1433	D	1.4	0.33
K03515	Human neuroleukin “mRNA,” complete cds	613		56	NC	0	0	92	NC	0	0	385	I	1.6	0.33
U85265	Human down syndrome critical region 1 (DSCR1) “gene,” alternative exon 1 /gb = U85	−23	*	18	NC	0	0	26	I	˜1.0	0	68	I	˜2.3	0.33
L38941	Homo sapiens ribosomal protein L34 (RPL34) “mRNA,” complete cds	3050		−391	NC	0	0	−288	NC	0	0	−910	D	1.4	0.32
X16064	Human mRNA for translationally controlled tumor protein	4023		−647	NC	0	0	−443	NC	0	0	−1128	D	1.4	0.32
X73460	H. sapiens mRNA for ribosomal protein L3	6926		−1365	NC	0	0	−1676	NC	0	0	−1679	D	1.3	0.32
		44	*	26	NC	0	0	21	NC	0	0	57	I	2.3	0.31
M80335	Homo sapiens protein kinase A catalytic subunit “mRNA,” 3′ end	89		−22	NC	0	0	−1	NC	0	0	−51	D	2.3	0.3
X51345	Human jun-B mRNA for JUN-B protein	187		27	NC	0	0	6	NC	0	0	155	I	1.8	0.3
G4319-HT458	Ribosomal Protein L5	2621		6	NC	0	0	22	NC	0	0	−772	D	1.4	0.29
J05614	Human proliferating cell nuclear antigen (PCNA) “gene,” promoter region. /gb = J0561	630		−125	NC	0	0	87	NC	0	0	−253	D	1.7	0.29
M23294	Human beta-hexosaminidase beta-subunit (HEXB) gene	130		−36	NC	0	0	8	NC	0	0	−68	MD	2.1	0.28
G2274-HT237	Rna Polymerase “II,” 14.5 Kda Subunit	314		94	NC	0	0	50	NC	0	0	210	I	1.7	0.27
L76200	Human guanylate kinase (GUK1) “mRNA,” complete cds	700		91	NC	0	0	3	NC	0	0	376	I	1.5	0.27
M88458	Human ELP-1 mRNA sequence	197		85	NC	0	0	142	NC	0	0	152	I	1.8	0.27
G1869-HT190	Male Enhanced Antigen	369		84	NC	0	0	101	NC	0	0	233	I	1.6	0.26
G2036-HT209	Stimulatory Gdp/Glp Exchange Protein For C-Ki-Ras P21 and Smg P21	34		49	NC	0	0	47	NC	0	0	43	I	2.3	0.26
M95809	Human basic transcription factor 62kD subunit “(BTF2),” complete cds	76		−5	NC	0	0	13	NC	0	0	−43	D	2.3	0.26
U37022	Human cyclin-dependent kinase 4 (CDK4) “gene,” complete cds	585		143	NC	0	0	26	NC	0	0	325	I	1.6	0.26
U60276	Human hASNA-I “mRNA,” complete cds	126		32	NC	0	0	−104	NC	0	0	109	MI	1.9	0.26
D21235	Human mRNA for HHR23A “protein,” complete cds	301		65	NC	0	0	82	NC	0	0	194	I	1.6	0.25
M37245	Human Ig superfamily cytotoxic T-lymphocyte-associated protein (CTLA-4) gene	67		−40	NC	0	0	−7	NC	0	0	−38	MD	2.3	0.25
U07424	Human putative tRNA synthetase-like protein “mRNA,” complete cds	851		103	NC	0	0	51	NC	0	0	405	I	1.5	0.25
U25182	Human antioxidant enzyme AOE37-2 “mRNA,” complete cds	141		74	NC	0	0	9	NC	0	0	116	MI	1.8	0.25
X04500	Human gene for prointerleukin 1 beta	482		121	NC	0	0	26	NC	0	0	−192	D	1.7	0.25
X17042	Human mRNA for hematopoetic proteoglycan core protein	751		82	NC	0	0	−190	NC	0	0	−274	D	1.6	0.25
Z35093	H. sapiens mRNA for SURF-1	432		99	NC	0	0	5	NC	0	0	253	I	1.6	0.25
D21853	Human mRNA for KIAA0111 “gene,” complete cds	448		100	NC	0	0	120	NC	0	0	255	I	1.6	0.24
J02902	Human protein phosphatase 2A regulatory subunit alpha-isotype (alpha-PR65) “mRN	344		47	NC	0	0	103	NC	0	0	211	I	1.6	0.24
J04823	Human cytochrome c oxidase subunit VIII (COX8) “mRNA,” complete cds	1696		55	NC	0	0	174	NC	0	0	653	I	1.4	0.24
L76191	Homo sapiens interleukin-1 receptor-associated kinase (IRAK) “mRNA,” complete cd	998		43	NC	0	0	21	NC	0	0	451	I	1.5	0.24
M22898	Human phosphoprotein p53 gene	47		33	NC	0	0	18	NC	0	0	51	I	2.1	0.24
Z49989	H. sapiens mRNA for smoothelin	153	*	16	NC	0	0	32	NC	0	0	119	MI	1.8	0.24
U24169	Human JTV-1 (JTV-1) “mRNA,” complete cds	292		94	NC	0	0	64	NC	0	0	184	I	1.6	0.23
		4000		471	NC	0	0	585	NC	0	0	1112	I	1.3	0.22
D79205	Human mRNA for ribosomal protein “L39,” complete cds	3136		−198	NC	0	0	−467	NC	0	0	−767	D	1.3	0.22
J03592	Human ADP/ATP translocase “mRNA,” 3′ “end,” clone pHAT8	2289		255	NC	0	0	234	NC	0	0	763	I	1.3	0.22
M81695	H. sapiens leukocyte adhesion glycoprotein “p150,95” “mRNA,” complete cds — Also R	14	*	17	NC	0	0	21	NC	0	0	31	I	˜2.3	0.22
S65738	actin depolymerizing factor “[human,” fetal “brain,” “mRNA,” 1452 nt]	850		−3	NC	0	0	142	NC	0	0	−282	D	1.5	0.22
Z12830	H. sapiens mRNA for SSR alpha subunit	39		27	NC	0	0	26	NC	0	0	43	MI	2.1	0.22
U14603	Human protein-tyrosine phosphatase (HU-PP-1) “mRNA,” partial sequence	279		−71	NC	0	0	37	NC	0	0	−116	D	1.7	0.21
X64364	H. sapiens mRNA for M6 antigen	645		220	NC	0	0	79	NC	0	0	305	I	1.5	0.21
Z37986	H. sapiens mRNA for phenylalkylamine binding protein	402		104	NC	0	0	−9	NC	0	0	216	I	1.5	0.21
G4318-HT458	Llm-Domain Transcription Factor Llm-1 — Also Represents: U14755	56	*	−24	NC	0	0	−7	NC	0	0	−30	D	2.2	0.2
J03589	Human ublquitin-like protein (GdX) “gene,” complete cds	65		20	NC	0	0	25	NC	0	0	59	MI	1.9	0.2
L16842	Human ublquinol cytochrome-c reductase core I protein “mRNA,” complete cds	1010		18	NC	0	0	−4	NC	0	0	404	I	1.4	0.2
L25080	Human GTP-binding protein (rhoA) “mRNA,” complete cds	1151		121	NC	0	0	49	NC	0	0	442	I	1.4	0.2
M34338	Human spermidine synthase “mRNA,” complete cds — Also Represents: M64231_ma	802		100	NC	0	0	24	NC	0	0	343	I	1.4	0.2
M94046	Human zinc finger protein (MAZ) mRNA	583		30	NC	0	0	−34	NC	0	0	278	I	1.5	0.2
U77846	Human elastin “gene,” partial cds and partial 3′UTR — “Also Represents: HG2994-HT	13	*	30	NC	0	0	32	NC	0	0	31	I	˜2.2	0.2
G4638-HT505	Spliceosomal Protein Sap 49	289		36	NC	0	0	114	NC	0	0	165	I	1.6	0.19
L19871	Human activating transcription factor 3 (ATF3) “mRNA,” complete cds	16	*	3	NC	0	0	4	NC	0	0	28	I	˜2.2	0.19
M16279	Human MIC2 “mRNA,” complete cds	437		54	NC	0	0	31	NC	0	0	218	I	1.5	0.19
U16031	Human transcription factor IL-4 Stat “mRNA,” complete cds	29	*	16	NC	0	0	15	NC	0	0	32	MI	2.1	0.19
U30255	Human phosphogluconate dehydrogenase (hPGDH) “gene,” complete cds	264		74	NC	0	0	79	NC	0	0	151	I	1.6	0.19
U52112	RbP gene (renin-binding protein) extracted from Human Xq28 genomic DNA in the re	88		−46	NC	0	0	−37	NC	0	0	−44	MD	2	0.19
U57099	Human APEG-1 “mRNA,” complete cds	15	*	18	NC	0	0	12	NC	0	0	28	I	˜2.2	0.19
U66469	Human cell growth regulator CGR19 “mRNA,” complete cds	75		−14	NC	0	0	−31	NC	0	0	−38	D	2	0.19
X67951	H. sapiens mRNA for proliferation-associated gene (pag)	2638		−138	NC	0	0	−74	NC	0	0	−636	D	1.3	0.19
Z46632	H. sapiens HSPDE4C1 gene for “3′,5′-cyclic” AMP phosphodiesterase	14	*	31	NC	0	0	39	NC	0	0	29	MD	˜2.1	0.19
D00017	Human lipocortin II mRNA	3431		−148	NC	0	0	−249	NC	0	0	−757	D	1.3	0.18
L21936	Human succinate dehydrogenase flavoprotein subunit (SDH) “mRNA,” complete cds	282		62	NC	0	0	85	NC	0	0	157	I	1.6	0.18
U28386	Human nuclear localization sequence receptor hSRP1 alpha “mRNA,” complete cds	296		135	NC	0	0	145	NC	0	0	163	I	1.5	0.18
X03342	Human mRNA for ribosomal protein L32	7474		−365	NC	0	0	−304	NC	0	0	−1339	D	1.2	0.18
D13641	Human mRNA for KIAA0016 “gene,” complete cds	217		−15	NC	0	0	101	NC	0	0	−86	D	1.7	0.17
J04182	Homo sapiens lysosomal membrane glycoprotein-1 (LAMP1) “mRNA,” complete cds	572		60	NC	0	0	16	NC	0	0	243	I	1.4	0.17
M92843	H. sapiens zinc finger transcriptional regulator “mRNA,” complete cds — “Also Represe	26		15	NC	0	0	12	NC	0	0	28	MI	2.1	0.17
U57342	Human myelodysplasia/myeloid leukemia factor 2 (MLF2) “mRNA,” complete cds	612		56	NC	0	0	150	NC	0	0	260	I	1.4	0.17
U79257	Human clone 23932 mRNA sequence	1	*	11	NC	0	0	−11	NC	0	0	38	I	˜1.9	0.17
X69391	H. sapiens mRNA for ribosomal protein L6	4078		42	NC	0	0	−768	NC	0	0	−825	D	1.3	0.17
Y09022	H. sapiens mRNA for Not56-like protein	440		28	NC	0	0	34	NC	0	0	208	I	1.5	0.17
D85433	Human MURR1 “mRNA,” sequence. /gb = D85433 /ntype = RNA	35	*	3	NC	0	0	15	NC	0	0	32	I	1.9	0.16
J04031	Human methylenetetrahydrofolate dehydrogenase-methenyltetrahydrofolate cyclohy	137		34	NC	0	0	46	NC	0	0	85	I	1.6	0.16
L26339	Human autoantigen “mRNA,” complete cds	67	*	2	NC	0	0	0	NC	0	0	53	MI	1.8	0.16
M96995	Homo sapiens epidermal growth factor receptor-binding protein GRB2 (EGFRBP-GR	286		−40	NC	0	0	−51	NC	0	0	−106	D	1.6	0.16
U96113	Homo sapiens Nedd-4-like ublquitin-protein ligase WWP1 “mRNA,” partial cds. /gb = U	67		−35	NC	0	0	−38	NC	0	0	−32	MD	1.9	0.16
X06956	Human HALPHA44 gene for “alpha-tubulin,” exons 3-Jan	723		97	NC	0	0	−41	NC	0	0	278	I	1.4	0.16
X13293	Human mRNA for B-myb gene	173	*	41	NC	0	0	15	NC	0	0	101	MI	1.6	0.16
X01420	H. sapiens mRNA for hHKb1 protein	3070		−530	NC	0	0	995	NC	0	0	−651	D	1.3	0.16
X95586	H. sapiens MB1 gene	1294		116	NC	0	0	−95	NC	0	0	418	I	1.3	0.16
Z49105	H. sapiens HO21 mRNA	346		−76	NC	0	0	−24	NC	0	0	−122	MD	1.5	0.16
D13720	Human mRNA for “LYK,” complete cds — Also Represents: L10717	7	*	15	NC	0	0	22	NC	0	0	31	I	˜1.9	0.15
L09260	Human (chromosome 3p25) membrane protein mRNA	268		96	NC	0	0	26	NC	0	0	165	I	1.4	0.15
U03735	Human MAGE-3 antigen (MAGE-3) “gene,” complete cds	731		−157	NC	0	0	9	NC	0	0	−214	D	1.4	0.15
U12595	Human tumor necrosis factor type 1 receptor associated protein (TRAP1) “mRNA,” p	349		65	NC	0	0	−28	NC	0	0	162	I	1.5	0.15
U18300	Human damage-specific DNA binding protein p48 subunit (DDB2) “mRNA,” complete	128		31	NC	0	0	35	NC	0	0	81	I	1.6	0.15
U28686	Human putative RNA binding protein RNPL “mRNA,” complete cds	137		116	NC	0	0	112	NC	0	0	83	I	1.6	0.15
U83461	Human putative copper uptake protein (hCTR2) “mRNA,” complete cds. /gb = U83461	34	*	16	NC	0	0	3	NC	0	0	31	I	1.9	0.15
X59434	Human rohu mRNA for rhodanese	121	*	12	NC	0	0	4	NC	0	0	77	I	1.6	0.15
X76057	H. sapiens PMI1 mRNA for phosphomannose isomerase	81		6	I	1.1	0	55	NC	0	0	58	I	1.7	0.15
		36	*	−35	NC	0	0	−44	NC	0	0	−41	D	˜1.8	0.14
K02574	Human purine nucleoside phosphorylase (PNP) “mRNA,” complete cds	437		99	NC	0	0	38	NC	0	0	181	I	1.4	0.14
L11285	Homosapiens ERK activator kinase (MEK2) mRNA	330		38	NC	0	0	22	NC	0	0	150	MI	1.5	0.14
M19483	Human ATP synthase beta subunit gene	1639		107	NC	0	0	93	NC	0	0	461	I	1.3	0.14
S81003	L-UBC = ublquitin conjugating enzyme “[human,” odontogenic “keratocysts,” mRNA “R	344		96	NC	0	0	122	NC	0	0	156	MI	1.5	0.14
U01923	Human BTK region clone ftp-3 mRNA	38		−17	NC	0	0	3	NC	0	0	−28	D	˜1.9	0.14
U52427	Human RNA polymerase II seventh subunit (rpb-7) “gene,” complete cds.	308		96	NC	0	0	4	NC	0	0	142	MI	1.5	0.14
U58048	Human metallopeptidase PRSM1 “mRNA,” complete cds	170		26	NC	0	0	29	NC	0	0	92	MI	1.5	0.14
X78338	Synthetic adenovirus transformed human retina cell “line,” MRP mRNA	39		13	NC	0	0	18	NC	0	0	33	MI	1.8	0.14
X98261	H. sapiens mRNA for M-phase “phosphoprotein,” mpp5	107	*	11	NC	0	0	−49	NC	0	0	67	MI	1.6	0.14
Y11681	Homo sapiens mRNA for mitochondrial ribosomal protein S12. /gb = Y11681 /ntype = R	704		21	NC	0	0	57	NC	0	0	250	I	1.4	0.14
Z37166	H. sapiens BAT1 mRNA for nuclear RNA helicase (DEAD family)	1427		−91	NC	0	0	−80	NC	0	0	409	I	1.3	0.14
D16105	Human mRNA for leukocyte tyrosine “kinase,” complete cds	218		37	NC	0	0	−77	NC	0	0	105	MI	1.5	0.13
G1804-HT182	Ornithine Aminotransferase-Like 3	28	*	−12	NC	0	0	5	NC	0	0	26	MI	1.9	0.13
J04809	Human cytosolic adenylate kinase (AK1) “gene,” complete cds	35	*	36	NC	0	0	29	NC	0	0	29	MI	1.8	0.13
M16750	Human plm-1 oncogene “mRNA,” complete cds — “Also Represents: M27903, M2477	10	*	2	NC	0	0	26	NC	0	0	27	I	˜1.9	0.13
U01833	Human nucleotide-binding protein “mRNA,” complete cds	80		8	NC	0	0	4	NC	0	0	52	MI	1.7	0.13
X56468	Human mRNA for 14.3.3 “protein,” a protein kinase regulator	1773		−18	NC	0	0	−490	NC	0	0	−387	D	1.3	0.13
D25539	Human mRNA for KIAA0040 “gene,” complete cds	37	*	−36	NC	0	0	−7	NC	0	0	−24	MD	˜1.9	0.12
D86965	Human mRNA for KIAA0210 “gene,” complete cds	115		−11	NC	0	0	−9	NC	0	0	−45	MD	1.6	0.12
G1614-HT161	Protein Phosphatase “1,” Alpha Catalytic Subunit	738		144	NC	0	0	47	NC	0	0	240	MI	1.3	0.12
G2999-HT475	Thyroid “Peroxidase,” Alt. Splice 2 — Also Represents: M25715	36		−14	NC	0	0	−23	NC	0	0	−25	D	˜1.8	0.12
G3991-HT426	Cpg-Enriched “Dna,” Clone E18	398		146	NC	0	0	148	NC	0	0	152	I	1.4	0.12
J04444	Human cytochrome c-1 “gene,” complete cds	1004		45	NC	0	0	−61	NC	0	0	291	I	1.3	0.12
L08096	Human CD27 ligand mRNA, complete cds. — Also Represents: HG903-HT903	97		46	NC	0	0	47	NC	0	0	59	MI	1.6	0.12
M61832	Human S-adenosythomocysteine hydrolase (AHCY) “mRNA,” complete cds — Also Re	573		89	NC	0	0	60	NC	0	0	201	I	1.4	0.12
M62762	Human vacuolar H+ ATPase proton channel subunit “mRNA,” complete cds	771		88	NC	0	0	111	NC	0	0	246	I	1.3	0.12
U39412	Human platelet alpha SNAP “mRNA,” complete cds	55	*	31	NC	0	0	19	NC	0	0	38	I	1.7	0.12
U51586	Human slah binding protein 1 (SlahBP1) “mRNA,” partial cds.	491		105	NC	0	0	13	NC	0	0	175	I	1.4	0.12
X15729	Human mRNA for nuclear p68 protein — Also Represents: X52104	480		−23	NC	0	0	141	NC	0	0	−140	D	1.4	0.12
X53002	Human mRNA for integrin beta-5 subunit — Also Represents: J05633	462		−131	NC	0	0	−12	NC	0	0	−136	D	1.4	0.12
X53331	Human mRNA for matrix Gla protein	78		39	NC	0	0	−38	NC	0	0	50	MI	1.6	0.12
X81003	H. sapiens HCG V mRNA	302		61	NC	0	0	−56	NC	0	0	130	I	1.4	0.12
Z17227	H. sapiens mRNA for transmenbrane receptor protein	46	*	19	NC	0	0	7	NC	0	0	34	MI	1.7	0.12
Z36714	H. sapiens mRNA for cyclin F	129	*	4	NC	0	0	−36	NC	0	0	72	MI	1.6	0.12
AC002115	F25451_2 gene extracted from Human DNA from overlapping chromosome 19 cosm	99		−22	NC	0	0	−22	NC	0	0	−39	MD	1.7	0.11
D21851	Human mRNA for KIAA0028 “gene,” partial cds	30		11	NC	0	0	4	NC	0	0	24	I	1.8	0.11
G3039-HT320	Adp-Ribosylation-Like Factor	418		20	NC	0	0	−214	NC	0	0	151	I	1.4	0.11
J04794	Human aldehyde reductase “mRNA,” complete cds	319		55	NC	0	0	−7	NC	0	0	129	MI	1.4	0.11
L38935	Homo sapiens GT212 mRNA	39	*	−8	NC	0	0	17	NC	0	0	−19	D	1.9	0.11
M28213	Homo sapiens GTP-binding protein (RAB2) “mRNA,” complete cds — Also Represents	117		−5	NC	0	0	52	NC	0	0	−45	D	1.6	0.11
M64098	Human high density lipoprotein binding protein (HBP) “mRNA,” complete cds	299		−128	NC	0	0	−6	NC	0	0	−93	MD	1.5	0.11
U10117	Human endothelial-monocyte activating polypeptide II “mRNA,” complete cds	76		2	NC	0	0	1	NC	0	0	−32	D	1.7	0.11
U59877	Human low-Mr GTP-binding protein (RAB31) “mRNA,” complete cds — Also Represen	159		−43	NC	0	0	58	NC	0	0	−57	MD	1.6	0.11
U91985	Human DNA fragmentation factor-45 “mRNA,” complete cds	114	*	15	NC	0	0	35	NC	0	0	61	I	1.5	0.11
X13839	Human mRNA for vascular smooth muscle alpha-actin	208		36	NC	0	0	17	NC	0	0	95	MI	1.5	0.11
AF009368	Homo sapiens Luman “mRNA,” complete cds. /gb = AF009368 /ntype = RNA	198		55	NC	0	0	−2	NC	0	0	85	MI	1.4	0.1
D21261	Human mRNA for KIAA0120 “gene,” complete cds	2203		−128	NC	0	0	−2	NC	0	0	454	I	1.2	0.1
D78275	Human mRNA for proteasome subunit “p42,” complete cds	131		54	NC	0	0	78	NC	0	0	−46	MD	1.5	0.1
L16464	Human ETS oncogene (PEP1) “mRNA,” complete cds	34		−6	NC	0	0	−5	NC	0	0	−26	MD	˜1.7	0.1
M25164	Human thyrotropin beta subunit gene	20	*	25	NC	0	0	36	NC	0	0	18	MI	1.9	0.1
U12897	Human non-translated mRNA sequence	35		−20	NC	0	0	−15	NC	0	0	−22	D	˜1.7	0.1
X74331	H. sapiens mRNA for DNA primase (subunit p58)	62		47	NC	0	0	7	NC	0	0	38	MI	1.6	0.1
X96698	H. sapiens mRNA for D1075-like gene	118		10	NC	0	0	−10	NC	0	0	60	I	1.5	0.1
D64142	Human mRNA for histone “Hix,” complete cds	646		137	NC	0	0	75	NC	0	0	184	I	1.3	0.09
HG415-HT415	“Lectin,” “Galactoside-Binding,” “Soluble,” 2	23	*	4	NC	0	0	3	NC	0	0	18	I	1.8	0.09
J03779	Human common acute lymphoblastic leukemia antigen (CALLA) “mRNA,” complete c	99		−26	NC	0	0	6	NC	0	0	−36	D	1.6	0.09
L02326	Homo sapiens (clone Hu lambda-17) lambda-like “gene,” complete cds	30	*	27	NC	0	0	3	NC	0	0	−51	D	˜1.5	0.09
L33842	Homo sapiens (clone FFE-7) type II inosine monophosphate dehydrogenase (IMPDH	1773		−212	NC	0	0	−274	NC	0	0	375	I	1.2	0.09
L43631	Homo sapiens scaffold attachment factor (SAF-B) “gene,” partial cds	116		8	NC	0	0	73	NC	0	0	56	MI	1.5	0.09
M31013	Human nonmuscle myosin heavy chain (NMHC) “mRNA,” 3′ end	652		−106	NC	0	0	119	NC	0	0	184	I	1.3	0.09
M93650	Human paired box gene (PAX6) “homologue,” complete cds	82		−29	NC	0	0	−4	NC	0	0	−30	MD	1.6	0.09
S75463	P43 = mitochondrial elongation factor homolog “[human,” “liver,” “mRNA,” 1644 nt]	1529		47	NC	0	0	−214	NC	0	0	321	I	1.2	0.09
X69550	H. sapiens mRNA for rho GDP-dissociated inhibitor 1	977		66	NC	0	0	130	NC	0	0	237	I	1.2	0.09
X75535	H. sapiens mRNA for PxF protein	50	*	19	NC	0	0	−8	NC	0	0	31	I	1.6	0.09
X82554	H. sapiens SPHAR gene for cyclin-related protein	33		−17	NC	0	0	−15	NC	0	0	−25	MD	˜1.7	0.09
Y00815	Human mRNA for LCA-homolog. LAR protein (leukocyte antigen related)	204		6	NC	0	0	−25	NC	0	0	84	I	1.4	0.09
Y08613	H. sapiens alternative 3′ UTR of Nup88 mRNA. /gb = Y08613 /ntype = RNA	−7	*	54	NC	0	0	24	NC	0	0	38	MI	˜1.6	0.09
D50914	Human mRNA for KIAA0124 “gene,” partial cds	332		−2	NC	0	0	26	NC	0	0	108	MI	1.3	0.08
D55654	Human mRNA for cytosolic malate “dehydrogenase,” complete cds	490		31	NC	0	0	65	NC	0	0	−117	MD	1.3	0.08
G2279-HT237	Triosephosphate isomerase	3121		149	NC	0	0	−172	NC	0	0	490	I	1.2	0.08
L34587	Homo sapiens RNA polymerase II elongation factor “SIII,” p15 subunit “mRNA,” com	704		77	NC	0	0	101	NC	0	0	173	I	1.2	0.08
L49054	Homo sapiens t(3;5)(q25.1;p34) fusion gene NPM-MLF1 mRNA, complete cds.	4	*	3	NC	0	0	17	NC	0	0	28	I	˜1.6	0.08
M64676	Human K+ channel subunit “gene,” complete cds	31	*	−25	NC	0	0	−25	NC	0	0	−30	MD	˜1.5	0.08
S67325	propionyl CoA carboxylase beta subunit “[human,” “liver,” “placenta,” “HL1008,” “mR	86		64	NC	0	0	0	NC	0	0	42	MI	1.5	0.08
U25435	Human transcriptional repressor (CTCF) “mRNA,” complete cds	42		1	NC	0	0	17	NC	0	0	24	MI	1.6	0.08
U26914	Human ras-responsive element binding protein (RREB-1) “mRNA,” complete cds	31		−19	NC	0	0	−31	NC	0	0	−34	D	˜1.5	0.08
Y07829	exon A2 from H. sapiens gene encoding RING finger protein. /gb = Y07829 /ntype = DN	−90	*	62	NC	0	0	106	I	˜1.0	0	116	I	˜1.3	0.08
Z56281	H. sapiens mRNA for interferon regulatory factor 3	134	*	4	NC	0	0	−25	NC	0	0	56	I	1.4	0.08
		5063		37	NC	0	0	−18	NC	0	0	634	I	1.1	0.07
D11428	Human mRNA for PMP-22(PAS-II/SR13/Gas-3) of peripheral “myelin,” complete cds	88		−15	NC	0	0	20	NC	0	0	−29	MD	1.5	0.07
D13118	Human mRNA for ATP synthase subunit c encoded by P1 gene	746		72	NC	0	0	−90	NC	0	0	169	I	1.2	0.07
D28589	Human mRNA “(KIAA00167),” partial sequence. /gb = D28589 /ntype = RNA	428		−59	NC	0	0	−70	NC	0	0	−101	MD	1.3	0.07
D29012	Human mRNA for proteasome subunit “Y,” complete cds	1016		89	NC	0	0	−118	NC	0	0	205	I	1.2	0.07
D82061	Human B-cell mRNA for a member of the short-chain alcohol dehydrogenase “family	86		18	NC	0	0	−3	NC	0	0	38	I	1.4	0.07
L37792	Human syntaxin 1A “mRNA,” complete cds	75		8	NC	0	0	−7	NC	0	0	36	MI	1.5	0.07
M15182	Human beta-glucuronidase “mRNA,” complete cds	101		−21	NC	0	0	20	NC	0	0	41	MI	1.4	0.07
M24485	Homo sapiens (clone pHGST-pl) glutathione S-transferase pl (GSTP1) “gene,” comp	1295		14	NC	0	0	−55	NC	0	0	244	I	1.2	0.07
M29610	Human glycophorin E “mRNA,” complete cds — Also Represents: J02982	8	*	11	NC	0	0	5	NC	0	0	22	I	˜1.5	0.07
U49436	Human translation initiation factor 5 (elF5) “mRNA,” complete cds	106		42	NC	0	0	−15	NC	0	0	46	I	1.4	0.07
U59831	Human transcription “factor,” forkhead related activator 4 (FREAC-4) “gene,” comple	446		−7	NC	0	0	37	NC	0	0	−98	D	1.3	0.07
U60269	putative envelope protein; orf similar to env of Type A and Type B retroviruses and to	40	*	1	NC	0	0	5	NC	0	0	21	I	1.5	0.07
U62325	Human FE65-like protein (hFE65L) “mRNA,” partial cds	33		4	NC	0	0	−12	NC	0	0	−17	MD	˜1.7	0.07
X12876	Human mRNA fragment for cytokeratin 18. — “Also Represents: M24842, M26326”	663		45	NC	0	0	−58	NC	0	0	165	I	1.2	0.07
X59417	H. sapiens PROS-27 mRNA	1741		−216	NC	0	0	−284	NC	0	0	306	I	1.2	0.07
Z29505	H. sapiens mRNA for nucleic acid binding protein sub2.3	986		−33	NC	0	0	−197	NC	0	0	218	I	1.2	0.07
D50912	Human mRNA for KIAA0122 “gene,” partial cds	64		−13	NC	0	0	15	NC	0	0	29	MI	1.5	0.06
D63390	Human mRNA for acetylhydrolase IB “beta-subunit,” complete cds	38		−17	NC	0	0	−17	NC	0	0	−15	MD	1.6	0.06
D79983	Human mRNA for KIAA0161 “gene,” complete cds	4	*	31	NC	0	0	22	NC	0	0	26	I	˜1.5	0.06
HG36-HT410	Polymyositis/Scleroderma (Pm-Scl) Autoantigen, Alt. Splice 2 — Also Represents: M58	95		19	NC	0	0	27	NC	0	0	−29	MD	1.4	0.06
M23197	Human differentiation antigen (CD33) “mRNA,” complete cds	90		23	NC	0	0	4	NC	0	0	35	I	1.4	0.06
M31303	Human oncoprotein 18 (Op18) “gene,” complete cds	330		9	NC	0	0	65	NC	0	0	−74	D	1.3	0.06
U16812	Human Bak-2 “gene,” complete cds — “Also Represents: U16811, U23765, X84213”	66		−16	NC	0	0	−9	NC	0	0	28	MI	1.4	0.06
U80184	Homo sapiens FLII “gene,” complete cds	147	*	66	NC	0	0	42	NC	0	0	49	MI	1.3	0.06
X05323	Human MRC OX-2 gene signal sequence	30	*	−9	NC	0	0	−13	NC	0	0	−25	MD	˜1.5	0.06
X68560	H. sapiens SPR-2 mRNA for GT box binding protein	32		−7	NC	0	0	14	NC	0	0	−15	D	˜1.6	0.06
X96484	H. sapiens mRNA for DGCR6 protein	224		15	NC	0	0	−26	NC	0	0	70	I	1.3	0.06
X98801	H. sapiens mRNA for dynactin	234		−45	NC	0	0	−65	NC	0	0	67	MI	1.3	0.06
Y07566	H. sapiens mRNA for RIT protein	16	*	14	NC	0	0	14	NC	0	0	16	I	˜1.6	0.06
Y08999	H. sapiens mRNA for Sop2p-like protein	820		7	NC	0	0	48	NC	0	0	159	I	1.2	0.06
AF006041	Homo sapiens Fas-binding protein (DAXX) “mRNA,” partial cds. /gb = AF006041 /ntyp	173		13	NC	0	0	46	NC	0	0	51	I	1.3	0.05
D00596	Human thymidylate syntase (EC 2.1.1.45) “gene,” complete cds	592		58	NC	0	0	41	NC	0	0	120	I	1.2	0.05
D13636	Human mRNA for KIAA0011 “gene,” complete cds	121		5	NC	0	0	3	NC	0	0	39	MI	1.3	0.05
D14710	Human mRNA for ATP synthase alpha “subunit,” complete cds	1915		−21	NC	0	0	−38	NC	0	0	−255	MD	1.2	0.05
D43642	Human YL-1 mRNA for YL-1 protein (nuclear protein with DNA-binding “ability),” com	303		−10	NC	0	0	−35	NC	0	0	79	I	1.3	0.05
G3107-HT328	Plasma Membrane Calcium Pump Hpmca2a — Also Represents: U15688	34	*	−1	NC	0	0	−9	NC	0	0	−12	MD	1.6	0.05
M14483	PTMA gene extracted from Human prothymosin alpha “mRNA,” complete cds — “Also	2251		54	NC	0	0	567	NC	0	0	−262	D	1.1	0.05
M81757	H. sapiens S19 ribosomal protein “mRNA,” complete cds	6279		647	NC	0	0	−9	NC	0	0	608	I	1.1	0.05
U60115	Human skeletal muscle LIM-protein SLIM1 “mRNA,” complete cds	79		13	NC	0	0	44	NC	0	0	29	I	1.4	0.05
X13973	Human mRNA for ribonuclease/anglogenin inhibitor (RAI)	528		53	NC	0	0	−102	NC	0	0	108	MI	1.2	0.05
X59766	H. sapiens mRNA for Zn-alpha2-glycoprotein	−46	*	73	NC	0	0	60	NC	0	0	71	MI	˜1.2	0.05
X69836	H. sapiens mRNA sequence (15q11-13)	45	*	9	NC	0	0	−5	NC	0	0	21	MI	1.5	0.05
X80230	H. sapiens mRNA (clone C-2k) mRNA for serine/threonine protein kinase	287		36	NC	0	0	−84	NC	0	0	69	I	1.2	0.05
X82207	H. sapiens mRNA for beta-centractin (PC3)	106		−23	NC	0	0	−19	NC	0	0	38	I	1.4	0.05
X89399	H. sapiens mRNA for “ins(1,3,4,5)P4-binding” protein — Also Represents: L20688	50		0	NC	0	0	11	NC	0	0	23	I	1.5	0.05
X91257	H. sapiens mRNA for seryl-tRNA synthetase	720		−7	NC	0	0	−69	NC	0	0	131	MI	1.2	0.05
Y10376	H. sapiens mRNA for SIRP-beta1	113	*	1	NC	0	0	−38	NC	0	0	37	MI	1.3	0.05
		7358		−700	NC	0	0	917	NC	0	0	562	I	1.1	0.04
AJ001421	Homo sapiens mRNA for Rer1 protein. /gb = AJ001421 /ntype = RNA	446		70	NC	0	0	85	NC	0	0	87	MI	1.2	0.04
D31764	Human mRNA for KIAA0064 “gene,” complete cds	332		10	NC	0	0	−14	NC	0	0	69	MI	1.2	0.04
J02645	Human translational initiation factor “(elF-2),” alpha subunit “mRNA,” complete cds	346		−12	NC	0	0	146	NC	0	0	70	MI	1.2	0.04
L37936	Human nuclear-encoded mitochondrial elongation factor Ts (EF-Ts) “mRNA,” 3′ end	205		9	NC	0	0	47	NC	0	0	48	MI	1.2	0.04
M13792	Human adenosine deaminase (ADA) “gene,” complete cds	135		69	NC	0	0	−2	NC	0	0	38	MI	1.3	0.04
M60483	protein phosphatase-2A catalytic subunit-alpha gene extracted from Human protein p	109		0	NC	0	0	20	NC	0	0	−26	MD	1.3	0.04
M65254	Protein phosphatase 2A 65 kDa regulatory subunit-beta “mRNA,” complete cds	47		−3	NC	0	0	14	NC	0	0	−14	MD	1.4	0.04
M69197	HPR from Human haptoglobin and haptoglobin-related protein (HP and HPR) “genes	11	*	22	NC	0	0	5	NC	0	0	17	I	˜1.4	0.04
M84332	Human ADP-ribosylation factor 1 gene	1308		138	NC	0	0	62	NC	0	0	163	I	1.1	0.04
U23143	Human mitochondrial serine hydroxymethyltransferase “gene,” nuclear encoded mito	316		33	NC	0	0	−4	NC	0	0	70	MI	1.2	0.04
U25988	Human pregnancy-specific glycoprotein 13 (PSG13′) “mRNA,” complete cds	280	*	13	NC	0	0	5	I	1	0	62	MI	1.2	0.04
U43944	Human breast cancer cytosolic NADP(+)-dependent malic enzyme “mRNA,” partial c	66		12	NC	0	0	25	NC	0	0	−19	D	1.4	0.04
X78565	H. sapiens mRNA for “tenascin-C,” 7560bp	41	*	−24	NC	0	0	−4	NC	0	0	16	I	1.4	0.04
AF001548	815A9.1 gene (myosin heavy chain) extracted from Homo sapiens chromosome 16 B	−5	*	−14	NC	0	0	−5	NC	0	0	30	MI	˜1.3	0.03
		8301		−487	NC	0	0	1056	NC	0	0	489	I	1.1	0.03
D15049	Human mRNA for protein tyrosine phosphatase	26		−23	NC	0	0	−15	NC	0	0	−24	MD	˜1.3	0.03
G3415-HT359	Poliovirus Receptor	224		−23	NC	0	0	22	NC	0	0	46	MI	1.2	0.03
G4606-HT501	“Centractin,” Alpha	174		−28	NC	0	0	16	NC	0	0	35	MI	1.2	0.03
G4747-HT519	Nadh-Ublquinone “Oxidoreductase,” 51 Kda Subunit	149		−16	NC	0	0	25	NC	0	0	35	I	1.2	0.03
J03027	Human MHC class I HLA-6.09 “gene,” complete cds	8	*	13	NC	0	0	4	NC	0	0	18	I	˜1.3	0.03
L15189	Homo sapiens mitochondrial HSP75 mRNA, complete cds. — Also Represents: L1106	204		17	NC	0	0	109	NC	0	0	−37	D	1.2	0.03
L36529	Human (clone N5-4) protein p84 “mRNA,” complete cds	25	*	−13	NC	0	0	−8	NC	0	0	−22	MD	˜1.2	0.03
M14219	Human chondroitin/dermatan sulfate proteoglycan (PG40) core protein “mRNA,” com	6	*	−7	NC	0	0	37	NC	0	0	19	I	˜1.3	0.03
S67156	ASP = aspartoacylase “[human,” “kidney,” “mRNA,” 1435 nt]	27	*	−7	NC	0	0	−7	NC	0	0	−9	MD	˜1.4	0.03
U09646	Human camitine palmitoyltransferase II precursor (CPT1) gene	1	*	1	NC	0	0	10	NC	0	0	24	MI	˜1.3	0.03
U33936	Human adenosine kinase “mRNA,” complete cds. /gb = U33936 /ntype = RNA — Also Re	100		6	NC	0	0	16	NC	0	0	−23	MD	1.3	0.03
U81556	Human hypothetical protein A4 “mRNA,” complete cds	340		−26	NC	0	0	−138	NC	0	0	64	I	1.2	0.03
U89505	Human Hlark “mRNA,” complete cds.	511		−6	NC	0	0	−114	NC	0	0	71	MI	1.1	0.03
U92436	Human mutated in multiple advanced cancers protein (MMAC1) “mRNA,” complete c	−4	*	18	NC	0	0	13	NC	0	0	29	I	˜1.3	0.03
X06614	Human mRNA for receptor of retinoic acid	119		18	NC	0	0	−65	NC	0	0	28	MI	1.2	0.03
X62535	H. sapiens mRNA for diacylglycerol kinase	174	*	−5	NC	0	0	−32	NC	0	0	36	I	1.2	0.03
X64643	H. sapiens c6.1A mRNA	25	*	−26	NC	0	0	−10	NC	0	0	−25	MD	˜1.2	0.03
X69654	H. sapiens mRNA for ribosomal protein S26	3581		28	NC	0	0	−544	NC	0	0	314	I	1.1	0.03
X74570	H. sapiens mRNA for Gal-beta(1-3/1-4)GlcNAc alpha-2.3-sialyltransferase	93	*	−47	NC	0	0	11	NC	0	0	25	MI	1.3	0.03
X83572	H. sapiens ARSD mRNA	104	*	−54	NC	0	0	−78	NC	0	0	25	I	1.2	0.03
X94910	H. sapiens mRNA for ERp31 protein	318		−81	NC	0	0	52	NC	0	0	53	MI	1.2	0.03
X99975	H. sapiens mRNA for hRTR/hGCNF protein	−1	*	10	NC	0	0	23	NC	0	0	27	I	˜1.3	0.03
Y08991	H. sapiens mRNA for adaptor protein p150	55	*	0	NC	0	0	18	NC	0	0	18	I	1.3	0.03
		24		−2	NC	0	0	−5	NC	0	0	−20	D	˜1.2	0.02
D16562	Human mRNA for ATP synthase gamma-subunit “(L-type),” complete cds	628		89	NC	0	0	265	NC	0	0	−56	MD	1.1	0.02
D38145	Human mRNA for prostacyclin “synthase,” complete cds	24	*	−13	NC	0	0	−16	NC	0	0	−28	MD	˜1.2	0.02
D56495	Human mRNA for Reg-related sequence derived peptide-2	26		12	NC	0	0	10	NC	0	0	−11	D	˜1.3	0.02
L16991	Human thymidylate kinase (CDC8) “mRNA,” complete cds	254		30	NC	0	0	−2	NC	0	0	40	I	1.2	0.02
M14676	Human src-like kinase (slk) “mRNA,” complete cds	128		−22	NC	0	0	−22	NC	0	0	−21	MD	1.2	0.02
M33680	Human 26-kDa cell surface protein TAPA-1 “mRNA,” complete cds	1959		−64	NC	0	0	79	NC	0	0	159	I	1.1	0.02
M59371	Human protein tyrosine kinase “mRNA,” complete cds	191		23	NC	0	0	8	NC	0	0	32	I	1.2	0.02
M93143	Human plasminogen-like protein (PLGL) “mRNA,” complete cds.	13	*	−5	NC	0	0	−5	NC	0	0	12	MI	˜1.2	0.02
U14575	Human (ard-1) “mRNA,” complete cds	49		11	NC	0	0	0	NC	0	0	11	MI	1.2	0.02
U86529	Human glutathione transferase Zeta 1 (GSTZ1) “mRNA,” complete cds. /gb = U86529	347		34	NC	0	0	−61	NC	0	0	49	MI	1.1	0.02
U88898	Human endogenous retroviral H protease/integrase-derived ORF1 “mRNA,” complete	97	*	−28	NC	0	0	−13	NC	0	0	21	MI	1.2	0.02
X99699	H. sapiens mRNA for XIAP associated factor-1	65	*	−26	NC	0	0	−57	NC	0	0	16	I	1.3	0.02
L00137	GHRF gene (growth hormone releasing factor) extracted from Human growth hormon	4	*	−8	NC	0	0	17	NC	0	0	18	MI	˜1.1	0.01
M59807	Human NK4 “mRNA,” complete cds	234	*	−57	NC	0	0	−16	NC	0	0	16	MI	1.1	0.01
S46622	calcineurin A catalytic subunit “[human,” “testis,” “mRNA,” 2134 nt]	23	*	−1	NC	0	0	8	NC	0	0	−17	MD	˜1.1	0.01
U02019	Human AU-rich element RNA-binding protein AUF1 “mRNA,” complete cds	22	*	−1	NC	0	0	0	NC	0	0	−22	MD	˜1.1	0.01
U17886	Human succinate dehydrogenase iron-protein subunit (sdhB) gene	337		42	NC	0	0	19	NC	0	0	34	MI	1.1	0.01
U37251	Human KRAB zinc finger protein (ZNF177) “mRNA,” splicing “variant,” complete cds	22	*	−20	NC	0	0	4	NC	0	0	−25	D	˜1.1	0.01
U45975	Human phosphatidylinositol “(4,5)bisphosphate” 5-phosphatase homolog “mRNA,” pa	137		23	NC	0	0	12	NC	0	0	14	D	1.1	0.01
U74612	Human hepatocyte nuclear factor-3/fork head homolog 11A (HFH-11A) mRNA compl	326		0	MI	1	0	−22	NC	0	0	19	MI	1.1	0.01
X85134	H. sapiens RBQ-3 mRNA	22		3	NC	0	0	−9	NC	0	0	−26	D	˜1.1	0.01
Z68747	H. sapiens mRNA for imogen 38 /gb = Z68747 /ntype = RNA	22	*	−2	NC	0	0	37	NC	0	0	−22	D	˜1.1	0.01
AB000114	Human mRNA for ”osteomodulin,” complete cds	12	*	22	NC	0	0	−8	NC	0	0	−35	D	˜1.0	0

TABLE 5
ISGs and IRGs identified from mouse embryonic fibroblast incubated
in the presence or absence of IFN-αBBDB
Database: GenBank accession numbers
Diff, difference
I = those genes that were induced or upregulated by the treatment (ISGs)
D = those genes that were repressed or downregulated by the treatment (IRGs)
Fold C, fold change
Sig, significance factor
			intensity	Change	Dif	B	Fold C	Sig
X56602	Mus musculus mRNA interferon-induced 15-KDa protein	gene	2655	2499	I		17	22.12
L32974	“Mouse interferon-inducible protein homologue mRNA, complete cds”	gene	1829	1699	I		14	16.11
U73037	“Mus musculus interferon regulatory factor 7(mirf7) mRNA, complete cds”	gene	890	844	I		19.4	13.81
X98519	M. musculus mRNA for interleukin 11 receptor	gene	52	−868	D		17.8	13.37
M86829	“Mus musculus (crg-2) mRNA, complete cds”	gene	624	599	I	*	24.6	13.15
AA153021	mq67e05.r1 Soares 2NbMT Mus musculus cDNA clone 583808 5′ similar to gb:M55543	est	528	515	I	*	˜26.4	12.6
U15636	“Mus musculus GTP binding protein (GTP2) mRNA, complete cds”	gene	476	464	I	*	˜23.8	11.39
L32973	“Mouse thymidylate kinase homologue mRNA, complete cds”	gene	328	309	I	*	˜16.4	7.57
U19119	“Mus musculus G-protein-like LRG-47 mRNA, complete cds”	gene	400	367	I		12.2	6.78
U06924	“Mus musculus signal transducer and activator of transcription (Stat1) mRNA, complete	gene	461	420	I		11.1	6.76
M63620	“Mus musculus predicted GTP binding protein (IRG-47) mRNA, complete cds”	gene	265	255	I	*	˜13.3	5.98
M34815	“Mouse monokine induced by gamma interferon (MIG) mRNA, complete cds”	gene	260	245	I	*	˜13.0	5.78
U46637	“Mus musculus thymic shared antigen-1 (TSA-1) gene, complete cds”	gene	1717	1371	I		5	5.53
U22031	“Mus musculus 20S proteasome subunit Lmp7 (Lmp7d allele) mRNA, complete cds”	gene	382	340	I		9	5.14
U15635	“Mus musculus IFN-gamma induced (Mg11) mRNA, complete cds”	gene	380	331	I		7.7	4.36
AA013783	mh13a03.r1 Soares mouse placenta 4NbMP13.5 14.5 Mus musculus cDNA clone 4423	est	250	223	I	*	9.5	4.34
U44731	“Mus musculus putative purine nucleotide binding protein mRNA, complete cds”	gene	241	211	I		8.1	3.65
X56548	M. musculus Np-b mRNA for purine-nucleoside phosphorylase	gene	833	641	I		4.3	3.16
L16894	“Mus musculus Cylcophilin C (CyCPA) mRNA, complete cds”	gene	765	586	I		1.3	2.96
L04262	“Mus musculus(clones p10a-[1.5n, 1.7]b and pG4-14) lysyl oxidase gene, exon 7 and cd	gene	278	−788	D		3.8	2.93
M21117	“Mouse interferon-onduced Mx1 protein gene conferring selective resistance to influenza	gene	152	450	I	*	˜7.6	2.9
U60328	“Mus musculus proteasome activator PA28 alpha subunit mRNA, complete cds”	gene	366	293	I		5.1	2.61
X75129	“M. musculus (129/Sv) gene for xanthing dehydrogenase, exon 1”	gene	188	159	I		6.5	2.55
W13646	ma93f05.r1 Soares mouse p3NMF19.5 Mus musculus cDNA clone 318273 5′ similar to	est	140	127	I	*	˜7.0	2.46
W13646	ma93f05.r1 Soares mouse p3NMF19.5 Mus musculus cDNA clone 318273 5′ similar to	est	136	122	I		˜6.8	2.34
U33626	“Mus musculus PML isoform 1 (Pml) mRNA, complete cds”	gene	163	137	I		6.2	2.24
X52574	Mouse mRNA from Mov10 locus	gene	164	136	I	*	6	2.15
L39123	“Mus musculus apolipoprotein D (apoD) mRNA, complete cds”	gene	530	322	I		4	1.98
D21207	“Mouse mRNA for peripheral-type benzodiazepine receptor, complete cds”	gene	657	468	I		3.5	1.93
U43085	“Mus musculus glucocorticoid-attenuated response gene 39 (GARG-39) mRNA, complete	gene	115	109	I	*	˜5.8	1.85
AA165782	mt74e04.r1 Soares mouse lymph node NbMLN Mus musculus cDNA clone 635646-5′ s	est	402	291	I		3.6	1.63
U43084	“Mus musculus glucocorticoid-attenuated response gene 16 (GARG-39) mRNA, complete	gene	107	96	I	*	˜5.3	1.58
M44537	“Mus musculus HAM1 gene, complete cds”	gene	151	120	I		4.9	1.58
U60329	“Mus musculus proteasome activator PA28 beta subunit mRNA, complete cds”	gene	403	287	I		3.5	1.52
W76686	“me81f08.r1 Soares mouse embryo NbME13.5 14.5 Mus musculus cDNA clone 401991	est	235	177	I		4.1	1.51
X04653	Mouse mRNA fro Ly-6 alloantigen (Ly-6E.1)	gene	2057	1175	I		2.3	1.47
M31419	“Mouse 204 interferon-activatable protein mRNA, complete cds”	gene	116	92	I		4.9	1.4
AA013830	“mh04h06.r1 Soares mouse placenta 4NbMP13.5 14.5 Mus musculus cDNA clone 441	est	99	84	I	*	˜4.9	1.34
AA002528	mg54a04.r1 Soares mouse embryo NbME13.5 14.5 Mus musculus cDNA clone 427566	est	571	374	I	*	2.9	1.27
U02298	“Mus musculus NIH 3T3 chemokine rantes (Scya5) gene, complete cds”	gene	117	91	I		4.6	1.27
U65313	“Mus musculus ras-GTPase-activating SH3-domain binding proteifl (G3BP) gene, complete	gene	128	99 I		4.4	1.27
U46690	“Mus musculus ATP-dependent RNA helicase mRNA, partial cds”	gene	178	133 I		3.9		1.23
D44464	“Mouse mRNA for uridine phosphorylase, complete cds”	gene	96	75	I	*	4.5	1.14
X70058	M. musculus cytokine gene	gene	2114	1107	I		2.1	1.12
L38847	“Mus musculus hepatoma transmembrane kinase ligand (HTK ligand) mRNA, complete gene	26	−81	D		4.1	1.02
AA060167	mj72h03.r1 Soares mouse p3NMF19.5 Mus muscufus cDNA clone 481685 5′ similar to	est	96	73 I		4.2	1.02
D76440	“Mouse gene for necdin, complete cds and promoter sequence”	gene	387	251	I		2.8	1.01
AA059700	mj77g08.r1 Soares mouse p3NMF19.5 Mus musculus cDNA clone 482174 5′ similar to	est.	1306	1107	I		2.2	1
M86736	“Mouse acrogranin mRNA, complete cds”	gene	652	390 I		2.5	0.97
X07699	Mouse nucleolin gene	gene	106	−200	D		2.9	0.93
AA072961	“mm80b02.r1 Stratagene mouse embryonic carcinomaRA (#937318) Mus musculus cD	est	80	72	I	*	˜4.0	0.92
X51397	Murine MyD88 mRNA induced by interleukin-6	gene	194	133	I	*	3.2	0.91
AA106166	mm18d01.r1 Stratagene mouse diaphragm (#937303) Mus musculus cDNA clone 5218	est	165	116	I		3.3	0.9
L10244	“Mouse spermidine/spermine N1-acetyltransferase (SSAT) mRNA, complete cds”	gene	384	241	I		2.7	0.89
AA034714	“mi55h03.r1 Soares mouse embryo NbME13.5 14.5 Mus musculus cDNA clone 467477	est	911	−892	D		2	0.88
W41883	“mc64g08.r1 Soares mouse embryo NbME13.5 14.5 Mus musculus cDNA clone 35334	est	1394	718	I		2.1	0.87
D13664	Mouse mRNA for osteoblast specific factor 2 (OSF-2)	gene	234	−338	D		2.4	0.87
M21050	“Mouse lysozyme M gene, exon 4”	gene	421	−513	D		2.2	0.87
M73748	“Mouse OTS-8 mRNA, complete cds”	gene	568	331	I		2.4	0.83
X58251	MouseCOL1A2 mRNA for pro-alpha-2(I) collagen	gene	7702	2811	I		1.6	0.81
L11613	“Mus musculus proteasome (imp2) gene, complete mRNA”	gene	72	75	I	*	˜3.6	0.81
M63658	“M. musculus G protein. beta-subunit mRNA, complete cds”	ge.ne	129	90	I		3.4	0.8
M33960	“Mouse plasminogen activator inhibitor (PAI-1) mRNA, complete cds”	gene	2684	1191	I		1.8	0.79
U08020	“Mus musculus FVB/N collagen pro-alpha-1 type I chain mRNA, complete cds”	1936	914	I		1.9	0.79
AA170444	ms90f10.r1 Soares mouse 3NbMS Mus musculus cDNA clone 618859 5′ similar to SW	150	102	I		3.1	0.77
AA087943	“mn94h06.r1 Stratagene mouse lung 937302 Mus musculus cDNA clone 55177l 5′ sim	est	602	338	I		2.3	0.75
U51992	“Mus musculus interferon stimulated gene factor gamma mRNA, complete cds”	gene	74	56	I		˜3.7	0.74
W13646	ma93f05.r1 Soares mouse p3NMF1.9.5 Mus musculus cDNA clone 318273 5′ similar to	est	3002	1253	I		1.7	0.71
M57890	“Mouse factorB mRNA, complete cds”	gene	130	89	I		3.1	0.7
M21065	“Mouse interferon regulatory factor 1 mRNA, complete cds”	gene	112	78	MI		3.2	0.7
L04961	Mouse nuclear-localized inactive X-specific transcript (Xist) mRNA	gene	13	−56	D		˜3.5	0.66
X14425	Mouse mRNA for profilin	gene	557	305	I		2.2	0.66
D49382	“Mouse Nedd5 mRNA for DIFF6- orCDC3,10,11,12-like protein with GTPase-motif”	gene	114	−172	D		2.5	0.65
U02997	“Mus musculus 129 cryptdin-2 (Defcr2) gene, exon 2 and complete cds”	gene	150	97	MI		2.8	0.62
D28599	“Mouse mRNA for proteoglycan, PG-M”	gene	68	−113	D		2.7	0.6
M55154	“Mouse transglutaminase (TGase) mRNA, complete cds”	gene	68	48	I		3.4	0.59
M26270	“mouse stearoyl-CoA desaturase (SCD2) mRNA, complete cds”	gene	191	−231	D		2.2	0.58
X51703	Mouse mRNA for ubiquitin	gene	7705	2388	I		1.4	0.56
Y00516	Mouse mRNA for aidolase A	gene	3042	1149	I		1.8	0.55
U59463	“Mus musculus ICH-3 mRNA, complete cds”	gene	86	58	i		3.1	0.55
AA068780	mm64g04.r1 Stratagene mouse embryonic carcinoma (#937317) Mus musculus cDNA	est	63	50	MJ		˜3.1	0.53
W45807	mc80a10.r1 Soares mouse embryo NbME13.5 14.5 Mus musculus cDNA clone 354810	est	63	46	MJ *	˜3.2	0.5i
U29152	“Mus musculus aldose reductase mRNA, complete cds”	gene	675	328	I		1.9	0.51
U60087	“Mus musculus TAP2 (TAP2-d) mRNA, complete cds”	gene	61	50	J	*	˜3.0	0.5
D88793	“Mouse mRNA for cystein rich protein-1, complete cds”	gene	337	181	i		2.2	0.49
U27838	“Mus musculus glycosyl-phosphatidyl-inositol-anchored protein homolog mRNA, compl	gene	83	−95	D		2.5	0.48
AA117100	mo60a10.r1 Stratagene mouse Tcell 937311 Mus musculus cDNA clone 557946 5′ sim	est	196	−211	D		2.1	0.48
U77630	“Mus musculus adrenomedullin precursor mRNA, complete cds”	gene	182	97	MI		2.5	0.48
X77952	M. musculus (CDI) endoglin mRNA	gene	61	44	I		˜3.1	0.47
AA118758	mp59h02.r1 Soares 2NbMT Mus musculus cDNA clone 573555 5′ similar to gb:X54326	est	37	−64 D		2.7	0.47
W82026	me96a05.r1 Soares mouse embryo NbME13.5 14.5 Mus musculus cDNA clone 403376	est	294	159	I		2.2	0.46
X75313	M. musculus (C57BL/6) GB-like mRNA	gene	7224	2071	I		1.4	0.46
U14172	“Mus musculus p162 protein mRNA, complete cds”	gene	28	−51	D		2.9	0.46
W29730	mc09c09.r1 Soares mouse p3NMF19.5 Mus musculus cDNA clone 348016 5′ similar to	est	292	158	I		2.2	0.46
M58691	“Mouse growth factor-inducible protein mRNA, complete cds”	gene	72	47	MI		2.9	0.45
J05186	“Mouse protein disuifide isomerase-related protein (ERp72)mRNA, complete cds”	gene	575	276	I		1.9	0.45
AA097287	mk16h10.r1 Sbares mouse p3NMF19.5 Mus musculus cDNA clone A93123 5′ similar to	est	155	91	MI		2.4	0.43
X63535	M. musculus ufo mRNA	gene	564	264	J		1.9	0.42
M91458	“Mus musculus sterol-carrier protein X mRNA, complete cds”	gene	58	−82	D		2.4	0.41
X80638	M. musculus rhoC mRNA	gene	804	350	I		1.8	0.41
U50712	“Mus musculus monocyte chemoattractant protein-5 precursor(MCP-5) mRNA, comple	gene	57	42	I		˜2.9	0.41
U27455	“Mus musculus serine palmitoyltransferase LCB2 subunit mRNA, complete cds”	gene	110	66	I		2.5	0.41
AA114648	mn04b0S.r1 Beddington mouse embryonic region Mus musculus cDNA clone 536913 5	est	83	52	I		2.7	0.41
AA033424	m136b07.r1 Soares mouse embryo NbME13.5 14.5 Mus musculus cDNA clone 465589	est	20	−38	D		2.9	0.4
W36586	mb86c07.r1 Soares mouse p3NMF19.5 Mus musculus cbNA clone 336300 5′ similar to	est	43	−65	D		2.5	0.4
D38379	Mouse mRNA for pyrubate kinase M	gene	2164	748	I		1.5	0.38
W85270	mf42d05.r1 Soares mouse embryo NbME13.5 14.5 Mus musculus cDNA clone 407721	est	507	233	I		1.9	0.38
D87903	“Mouse mRNA for ARF6, complete cds”	gene	122	70	I		2.4	0.37
AA140026	mq39h04.r1 Barstead MPLRB1 Mus musculus cDNA clone 581143 5′ similar to TR:G92	est	24	−41	ME		2.7	0.37
L14677	“Mus musculus Epoc-1 mRNA, complete cds”	gene	54	40	I		˜2.7	0.36
Z49085	M. musculus mRNA for mouse developmental kinase 2 (MDK2)	gene	399	188	I		1.9	0.36
AA080704	mj63b03.d Soares mouse P3NMF19.5 Mus musculus cDNA clone 480749 5′ similar to	est	436	203	I		1.9	0.36
U58884	“Mus musculus SH3-containing protein SH3P7 mRNA, complete cds similar to Human	gene	125	72	MI		2.3	0.36
U38196	“Mus musculus palmytoylated protein p55 mRNA, complete cds”	gene	73	45 MI	*	2.6	0.36
M38381	“Mouse serine threonine tyrosine kinase (STY) mRNA, complete cds”	gene	13	−40	D		˜2.7	0.35
L15429	“Mus musculus L6 antigen mRNA, complete cds”	gene	825	336	I		1.7	0.35
AA170104	“ms49a04.r1 Life Tech mouse embryo 13.5dpc 10686014 Mus musculus cDNA clone 6	est	54	38	I		˜2.7	0.35
M60474	“Mouse myristoylated alanine-rich C-kinase substrate (MARCKS) mRNA, complete cds”	gene	128	−128	D			2	0.35
AA034714	“mi55h03.r1 Soares mouse embryo NbME13.5 14.5 Mus musculus cDNA clone 467477	est	1807	−829	D		1.5	0.34
AA034874	mi53a02.r1 Soares mouse embryo NbME13.5 14.5 Mus musculus cDNA clone 467210	est	55	34	I	*	2.7	0.34
U38981	“Mus musculus uterine mRNA, complete cds”	gene	13	−40	D		˜2.6	0.34
X81582	M. musculus mRNA for insulin-like growth factor binding protein-4	gene	371	174	I		1.9	0.34
M19681	“Mouse platelet-derived growth factor-inducible protein (JE) gene, complete cds”	gene	1798	618	I		1.5	0.34
W36757	mb94b01.r1 Soares mouse p3NMF19.5 Mus musculus cDNA clone 337033 5′ similar to	est	235	−194	D		1.8	0.33
X16319	Mouse mRNA for 54K subunit of signal recognition particle	gene	33	−47	D		2.4	0.32
D63902	“Mouse mRNA for estrogen-responsive finger protein, complete cds”	gene	72	43	MI	*	2.5	0.32
D10727	“Mouse mRNA for NDPP-1 protein, complete cds”	gene	19	−34	MD		˜2.7	0.32
L09104	“Mus musculus glucose phosphate isomerase mRNA, 3′ end”	gene	389	174	I		1.8	0.31
M22479	“Mouse tropomyosin isoform 2 mRNA, complete cds”	gene	650	−387	D		1.6	0.31
U78085	“Mus. musculus ribosomal protein S5 mRNA, complete cds”	gene	2491	767	I		1.4	0.31
J04179	“Mouse chromatin nonhistone high mobility group protein (HGM-I(Y), complete cds”	gene	355	162	I		1.8	0.31
X99572	M. musculus mRNA for new member of PDGFNEGT family of growth factors	gene	111	61	MI		2.2	0.3
AA107455	mp08f02.r1 Life Tech mouse embryo 8. 5dpc 1066401.9 Mus musculus cDNA clone 568	est	122	65	I		2.2	0.29
M21285	“Mouse stearoyl-CoA desaturase gene, exon 6”	gene	117	−110	D		1.9	0.29
M28071	“Mouse tissue factor (mtf) mRNA, complete cds”	gene	134	71	MI		2.1	0.29
U25633	“Mus musculus tumor-associated membrane protein (TMP) mRNA, complete cds”	gene	551	227	I		1.7	0.29
AA103356	mo18e02.r1 Life Tech mouse embryo 13 5dpc 10666014 Mus musculus cDNA clone 55	est	137	72	MI		2.1	0.29
Z30970	M. musculus (Balb/C) TIMP-3 gene for metalloproteinase-3 tissue inhibitor	gene	118	−108	D		1.9	0.28
U69488	“Mus musculus viral envelope like protein (G7e) gene, complete cds”	gene	105	56	MI		2.2	0.27
X07997	Mouse mRNA for cytotoxic T-cell membrane glycoprotein Ly-3 340 flank	gene	121	−108	D		1.9	0.27
X07295	M. musculus mitochondrial malate dehydrogenase gene 5′ flank and exon 1 (and joined(	gene	290	−201	D	1.7	0.27
X75313	M. musculus (C57BL/6) GB-like mRNA	gene	4600	1132	I		1.3	0.26
AA118729	mp57g08.r1 Soares 2NbMT Mus musculus cDNA clone 573374 5′ sirnilar to SW:TRAM	est	63	36	I		2.3	0.26.
L19932	“Mouse (beta ig-h3) mRNA, complete cds”	gene	140	71	I		2	0.26
D86232	“House mouse; Musculus domesticus mRNA for Ly-6C variant, complete cds”	gene	128	66	MI		2.1	0.26
AA089117	mt57e07.r1 Stratagene mouse testis (#937308) Mus. musculus cDNA clone 516132 5′ s	est	13	−35	D		˜2.4	0.26
M57999	“Mouse transcription factor NF-kappa-B DNA binding subunit mRNA, complete cds”	gene	41	−48	D		2.2	0.25
AA034714	“mi55h03.r1 Soares mouse embryo NbME13.5 14.5 Mus musculus cDNA clone 467477	est	567	−308	D		1.5	0.25
X61172	Mouse mRNA for alpha-mannosidase II	gene	73	−71	D		2	0.25
X65128	M. musculus gas1 mRNA	gene	582	223	I		1.6	0.25
AA105621	“rnm68b06.r1 Stratagene mouse macrophage (#937306) Mus musculus cDNA clone 53	est	666	249	I		1.6	0.25
W99875	“mg28d12.r1 Soares mouse embryo NbME13.5 14.5 Mus musculus cDNA clone 42491	est	460	183	I		1.7	0.24
X65582	M. musculus mRNA for alpha-2 collagen VI	gene	521	201	I		1.8	0.24
W08610	mb46d04.r1 Soares mouse p3NMF19.5 Mus musculus cDNA clone 332455 5′ similar to	est	218	98	MI		1.8	0.24
D83784	“Mouse mRNA for MIDA1, complete cds”	gene	19	−28	D		−2.4	0.23
X63162	M. musculus mRNA for transin-1	gene	850	292	I		1.5	0.23
X65553	M. musculus mRNA for poly(A) binding protein	gene	622	229	I		1.6	0.23
AA106783	mm91d10.r1 Stratagene mouse embryonic carcinomaRA (#937318) Mus musculus cDN	est	188	86	MI		1.9	023
AA107807	“mp04g03.r1 Life Tech mouse embryo 8 5dpc 10664019 Mus musculus cDNA clone 56	est	498	190	I		1.6	0.23
U79523	“Mus musculus peptidyiglycine alpha-amidating monooxygenase (PAM) mRNA, comple	gene	48	32	I	*	˜2.3	0.23
VV65178	md78h05.r1 Soares mouse embryo NbME13.5 14.5 Mus musculus cDNA clone 374553	est	52	−52	D		2	0.22
AA003431	“mg49a11.r1 Soares mouse embryo NbME13.5 14.5 Mus musculus cDNA clone 42710	est	675	235	I		1.5	0.22
X82786	M. musculus mRNA for Ki-67	gene	13	−32	D		˜2.3	0.22
W15003	mb25b12.r1 Soares mousep 3NMF19.5 Mus musculus cDNA clone 330431 5′ similar to	est	47	27	MI	*	˜2.3	0.22
X53929	M. musculus mRNA for PGII (decorin)	gene	1023	326	I		1.5	0.22
X65026	M. musculus mRNA for GTP-binding protein	gene	117	58	MI		2	0.22
AA117980	mn06b05.r1 Beddington mouse embryonic region Mus musculus cDNA clone 537105 5	est	190	86	MI		1.8	0.22
D21252	“Mouse mRNA for OSF-3, complete cds”	gene	1139	358	I		1.5	0.22
W15873	“mb55b12.r1 Soares mouse p3NMF19.5 Mus musculus CDNA clone 333311 5′ similar to	est	184	−124	D		1.7	0.21
L25126	“Mus musculus RNA helicase mRNA, complete cds”	gene	27	−33	D		2.2	0.21
L27990	“Mus musculus Ro protein mRNA, complete cds”	gene	49	28	MI	*	2.3	0.21
U38940	“Mus musculus asparagine synthetase mRNA, complete cds”	gene	417	181	I		1.6	0.21
X16151	Mouse mRNA for early T-lymphocyte activation 1 protein (ETa-1)	gene	828	−355	D		1.4	0.2
X92665	M. musculus mRNA for ubiquitin-conjugating enzyme UbcM3	gene	144	66	I		1.9	0.2
X59728	M. musculus mRNA for gas5 growth arrest specific protein	gene	277	−161	D		1.8	0.2
U34259	“Mus musculus Goigi 4-transmembrane spanning transporter MTP mRNA, complete cd	gene	413	155	I		1.6	0.2
X80478	M. musculus AEBP1 mRNA	gene	807	2561		1.5 .0.19
W99235	mf60c03.r1 Soares mouse embryo NbME13.5 14.5 Mus musculus cDNA clone 418660	est	45	25	MI	*	˜2.2	0.19
U42386	“Mus musculus fibroblast growth factor inducible gene 14 (FIN14) mRNA, complete cds	gene	34	−35	D		2	0.19
W13875	“mb36g03.r1 Soares mouse p3NMF19.5 Mus musculus cDNA clone 331540 5′ similar to	est	433	156	I		1.6	0.19
M28723	“Mus musculus housekeeping-type protein (MERS) mRNA, complete cds”	gene	30	−33	D		2.1	0.19
M77174	“Mouse perlecan mRNA, complete cds”	gene	58	−51	ME		1.9	0.18
J03776	“Mouse down regulatory protein (rpt-1r) of interleukin 2 receptor mRNA, complete cds”	gene	42	29	I	*	˜2.1	0.18
W41883	“mc64g08.r1 Soares mouse embryo NbME13.5 14.5 Mus musculus cDNA clone 35334	est	1106	317	I		1.4	0.18
L38611	“Mus musculus protein synthesis initiation factor 4A (elf-4A) gene, exons 10 and 11, cor	gene	543	183	I		1.5	0.18
D10578	Mouse mRNA for ubiquitin activating enzyme E1	gene	442	157	I		1.5	0.18
AA036265	“rni72g03.r1 Soares mouse embryo NbME13.5 14.5 Mus musculus CDNA clone 469108	est	64	32	I		2	0.18
Y00309	Mouse LDH-A gene for lactate dehydrogenase-A	gene	2240	547	1		1.3 0.18
M65255	“Mouse hydrophilic protein (KE2 wt) mRNA, complete cds”	gene	76	−61	ME		1.8	0.18
M15525	“Mouse laminin B1 mRNA, complete cds”	gene	128	−89	D		1.7	0.18
L20315	“Mus musculus MP81 gene and mRNA1 3′ end”	gene	42	26	MI	*	˜2.1	0.17
D10061	Mouse mRNA for DNA topoisomerase 1	gene	40	−37	D		1.9	0.17
AA000813	mg3Sh10.r1 Soares mouse embryo NbME13.5 14.5 Mus musculus cDNA clone 425827	est	155	67	MI		1.8	0.17
AA002605	mg44g07.r1 Soares mouse embryo NbME13.5 14.5 Mus musculus cDNA clone 426684	est	168	70	MI		1.7	0.17
AA028877	mh90g10.r1 Soares mouse placenta 4NbMP13.5 14.5 Mus musculus cDNA clone 4582	est	143	62	I		1.8	0.17
X01756	Mouse cytochrome c gene (MCI)	gene	529	175	I		1.5	0.17
U19825	“Mus musculus macrophage migration inhibitory factor (Mif) gene, complete cds”	gene	889	281	MI		1.4	0.17
M31131	“Mouse neural cadherin (N-cadherin) mRNA, complete cds”	gene	35	−34	I		2	0.17
AA036574	“mi69e05.r1 Soares mouse embryo NbME13.5 14.5 Mus musculus cDNA clone 468800	est	39	−36	D		1.9	0.16
U27267	“Mus musculus LPS-induced C-X-C chernokine LIX precursor, mRNA, complete cds”	gene	562	−236	D		1.4	0.16
W29420	99mb99a01.r1 Soares mouse p3NMF19.5Mus musculus cDNA clone 337512 5′ similar to	est	2150	502	I		1.3	0.16
AA034646	mh17d07.r1 Soares mouse placenta 4NbMP13.5 14.5 Mus musculus cDNA clone 34427	est	37	41	I	*	˜1.9	0.16
X81323	M. musculus mRNA for tripeptidyl peptidase II	gene	48	−41	D		1.9	0.18
AA064066	mj62d04.r1 Soares mouse p3NMF19.5 Mus musculus cDNA clone 480679 5′ similar to	est	1116	301	I		1.4	0.16
U43208	“Mus musculus phosphatidylethanolamine binding protein mRNA, complete cds”	gene	1027	285	I		1.4	0.16
AA118546	mn09c06.r1 Beddington mouse embryonic region Mus musculus cDNA clone 537418 5	est	173	71	MI		1.7	0.16
AA003383	mg49d05.r1 Soares mouse embryo NbME13.5 14.5 Mus musculus cDNA clone 427113	est	50	25	MI		2	0.18
M81477	“Mouse cytoplasmic phosphotyrosine phosphatase mRNA, complete cds”	gene	28	−28	D		2	0.16
AA103457	mo24g05.r1 Life Tech mouse embryo 13 5dpc 10866014 Mus musculus CDNA clone 55	est	71	34	MI		1.9	0.18
J04596	“Mouse platelet-derived growth factor-inducible KC protein mRNA, complete cds”	gene	118	−78	D		1.6	0.15
U13262	“Mus musculus myelin gene expression factor (MEF-2) mRNA, partial cds”	gene	15	−25	D		˜2.0	0.15
L42293	“Mus musculus acyl-coenzyme A:cholesterol acyltransferase (ACACT) mRNA, complet	gene	179	70	MI		1.6	0.15
M032948	mi24a02.r1 Soares mouse embryo NbME13.5 14.5 Mus musculus cDNA clone 464426	est	105	46	MI		1.8	0.15
X66473	M. musculus mRNA for (pro)collagenase	gene	115	50	MI		1.8	0.15
AA144469	mr16c09/r1 Soares mouse 3NbMS Mus musculus cDNA clone 597618 5′ similar to gb:X	est	69	32	I	*	1.9	0.15
W18308	“mb68h11.r1 Soares mouse p3NMF19.5 Mus musculus cDNA clone 334629 5′ similar to	est	2126	478	I		1.3	0.15
W47719		est	57	27	MI		1.9	0.14
X14194	Mouse mRNA for entactin	gene	178	−95	ME		1.5	0.14
AA119078	“mp65d05.r1 Soares 2NbMT Mus musculus cDNA clone 574089 5′ similar to	gb:X5874C	est	106	48	I		1.8	0.14
W42234	mc37a06.r1 Soares mouse p3NMF19.5 Mus musculus cDNA clone 350674 5′ similar to	est	144	58	MI		1.7	0.14
Y00094	Mouse mRNA for ras-related YPT1 protein	gene	687	195	I		1.4	0.14
U76832	“Mus musculus plasma membrane protein syntaxin-4 mRNA, complete cds”	gene	88	39	I		1.8	0.14
W33440	mc15d01.r1 Soares mouse p3NMF19.5 Mus musculus cDNA clone 348577 5′ similar to	est	223	81	MI	1.8	0.14
M12347	“Mouse skeletal alpha-actin gene, complete cds”	gene	271	96	MI		1.5	0.14
X16834	Mouse mRNA for Mac-2 antigen	gene	605	221	I		1.4	0.14
D88729	“Mouse mRNA for topoisomerase-inhibitor suppressed, complete cds”	gene	372	−184	D		1.4	0.14
J02870	“Mouse laminin receptor mRNA, complete cds”	gene	1745	−477	D		1.3	0.14
X72910	M. musculus Cd24a gene	gene	84	−57	ME		1.7	0.14
M29015	“Mouse ribosomal protein L7 (rpL7) gene, complete cds”	gene	110	−67	D	*	1.6	0.13
W51271		est	34	−29	D		1.9	0.13
M88489	“Mouse thymidine kinase gene1 complete cds”	gene	25	−23	D		1.9	0.13
L37092	“Mus musculus cyclin-dependent kinase homologue (P130PITSL) mRNA1 complete cds”	gene	38	−31	D		1.8	0.13
U11073	“Mus musculus Balb/angiotensin II receptor type 2 gene, exon 3 and complete cds”	gene	74	−50	ME		1.7	0.13
W71543	“me39c09.r1 Soares mouse embryo NbME13.5 14.5 Mus musculus cDNA clone 38987	est	275	126	ME		1.5	0.13
L41154	“Mus musculus SM22 alpha mRNA, complete cds”		gene	2020	427	I		1.3	0.13
D49949	“Mouse mRNA for IGIF precursor polypeptide, complete cds”	gene	35	37	I	*	˜1.7	0.13
U37353	“Mus musculus protein phosphatase 2A B′alpha3 regulatory subunit mRNA1 partial cds”	gene	57	27	1		1.9	0.13
U20372	“Mus musculus voltage-dependent calcium channel beta-3 subunit (CCHB3) mRNA, co	gene	94	40	MI		1.7	0.13
D30782	“Mouse mRNA for epiregulin, complete cds”	gene	17	−22	D		˜1.9	0.13
X56123	Mouse mRNA for talin	gene	147	57	I		1.6	0.13
W83337	rnf25h11.r1 Soares mouse embryo NbME.13.5 14.5 Mus musculus cDNA clone 406149	est	517	155	I		1.4	0.13
W17644	mb76b03.r1 Soares mouse p3NMF19.5 Mus musculus cDNA clone 335309 5′ similar to	est	1124	270	I		1.3	0.13
AA009014	mg97b12.r1 Soares mouse embryo NbME13.5 14.5 Mus musculus cDNA clone 440927	est	29	−24	D		1.8	0.12
X53753	Mouse mRNA for nonmuscle tropomyosin 5	gene	796	205	I		1.3	0.12
U49112	“Mus musculus calcium-binding protein ALG-2 (ALG-257) mRNA, complete cds”	gene	196	70	MI		1.6	0.12
X53584	“Mouse mRNA for HSP60 protein (clones 3T3-71 -9, and -M1)”	gene	413	−156	D		1.4	0.12
X15052	Mouse mRNA for3′-end of NCAM-140 and NCAM-180 isoforms	gene	42	−32	D		1.8	0.12
X573371	M. musculus CDNAp14 mRNA	gene	706	184	I		1.4	0.12
AA089264	mo59d06.r1 Stratagene mouse Tcell 937311 Mus musculus cDNA clone 557867 5′ sim	est	831	212	I		1.3	0.12
W13461	mb34g09.r1 Soares mouse p3NMF19.5 Mus muscularis cDNA clone 331360 5′ similar to	est	187	−89	ME		1.5	0.12
U58494	“Mus musculus melanoma cell-derived intracisternal A-particle mRNA, gag gene, comp	gene	86	−52	D		1.6	0.12
AA164143	mq84c11.r1 Stratagene mouse melanoma (#937312) Mus musculus cDNA clone 58542	est	36	28	I	*	˜1.8	0.12
W13502	ma85a03.r1 Soares mouse p3NMF19.5 Mus musculus cDNA clone 317452 5′ similar to	est	836	212	I		1.3	0.12
W51109		est	43	−31	D		1.7	0.11
X62622	“M. musculus TIMP-2 mRNA for tissue inhibitor of metalloproteinases, Type 2”	gene	75	31	I		1.7	0.11
M32309	“Mouse zinc finger protein (Zfx) mRNA, complete cds, clone pDP1119”	gene	5	−29	D		˜1.7	0.11
L35556	“Mus musculus Int-6 mRNA, complete cds”	gene	355	−139	ME		1.4	0.11
D14571	“Mouse mRNA for PEBP2b2 protein, complete cds”	gene	111	61	D		1.6	0.11
X61940	Mouse mRNA for a growth factor-inducible immediate early gene (3CH134)	gene	104	41	MI		1.6	0.11
D87663	“House mouse; Musculus domesticus mRNA for 14-3-3 epsilon, complete cds”	gene	702	181	I		1.3	o.11
X95580	M. musculus mRNA for hypoxia-inducible factor I alpha	gene	60	39	ME		1.6	0.11
J02623	“Mouse cytosolic aspartate aminotransferase isoenzyme mRNA, complete cds, clone pr	gene	63	27	I		1.7	0.11
W46016	mc77f12.r1 Soares mouse embryo NbME13.5 14.5 Mus musculus cDNA clone 354575	est	33	30	I	*	˜1.7	0.11
AA110896	mp62a09.r1 Soares 2NbMT Mus musculus cDNA clone 573784 5′ similar to SW:EPIP	est	185	61	I		1.5	0.11
AA008043	mg68e02.r1 Soares mouse embryo NbME13.5 14.5 Mus musculus cDNA clone 43817C	est	87	−48	D		1.6	0.1
D18432	“Mouse murine CD83 mRNA for murine homologue of CD63/ME491, complete cds”	gene	1439	−334	D		1.2	0.1
D50411	“Mouse mRNA for metrin alpha, complete cds”	gene	7	−27	D		1.7	0.1
Z72000	M. musculus BTG3 mRNA	gene	219	701		1.5	0.1
U41785	“Mus musculus metalloprotease/disintegrin/cysteine rich protein precursor (MDC9) cDN	gene	69	−41	D		1.6	0.1
Z31555	M. musculus (129/Sv) Ccte mRNA for CCT (chaperonin containing TCP-1) epsilon subu	gene	699	167	I		1.3	0.1
AA168350	ms30c06.r1 Stratagene mouse skin (#937313) Mus musculus cDNA clone 608458 5′ si	est	47	21	MI		1.8	0.1
AA008136	mg68g11.r1 Soares mouse embryo NbME13.5 14.5 Mus musculus cDNA clone 438212	est	967	218	1		1.3	0.1
M18194	Mouse fibronectin (FN) mRNA	gene	1024	−266	D		1.3	0.1
M20658	“Mouse interleukin-1 receptor mRNA, complete cds”	gene	148	−70	D		1.5	0.1
W33838	mc55c11.r1 Soares mouse embryo NbME13.5 14.5 Mus musculus cDNA clone 352438	est	48	−31	D		1.6	0.1
M25244	“Mouse pre-B celI P2B/LAMP-1 mRNA, complete cds”	gene	1098	−283	D		1.3	0.1
M82831	“Mus musculus macrophage metalloelastase mRNA, complete cds”	gene	5	−29	D		1.7	0.1
M84607	“Mus musculus PDGF-alpha-receptor (PDGF-alpha-R) mRNA, complete cds”	gene	194	−82	D	1.4	0.1
M15668	“Mus musculus X chromosome-linked phosphoglycerate kinase (pgk-1) mRNA, comple	gene	1254	254	1		1.3	0.09
AA059517	mj61c11.r1 Soares mouse embryo NbME13.5 14.5 Mus musculus cDNA clone 480596	est	14	−20	D	˜1.7	0.09
M76727	“Mouse pyruvate dehydrogenase (pdha-1) mRNA, complete cds”	gene	68	−37	D		1.5	0.09
U28138	“Mus musculus dishevelled-1 protein (Dvl1) gene, complete cds”	gene	39	−25	D		1.6	0.09
W98059	mg07e08.r1 Soares mouse embryo NbME13.5 14.5 Mus musculus cDNA clone 423110	est	9	−24	D	˜1.7	0..09
AA016858	mh35f03.r1 Soares mouse placenta 4NbMP13.5 14.5 Mus musculus cDNA clone 4445(	est	71	27	MI		1.6	0.09
X55316	M. musculus mRNA for CAAT-box DNA binding protein subunit B (NF-YB) (partial)	gene	38	−25	ME		1.7	0.09
X70847	M. musculus mRNA for adenine nucleotide translocase	gene	328	90	MI		1.4	0.09
L22355	“Mus musculus vascular adhesion cell molecule-1 (VCAM1) gene, exon 10”	gene	216	67	MI		1.5	0.09
D78188	Mouse mRNA for SCID complementing gene 2	gene	178	−71	D		1.4	0.08
D78647	“Mouse mRNA for phospholipase A2, complete cds”	gene	168	50	MI		1.4	0.08
W17411	mb58c09.r1 Soares mouse p3NMF19.5 Mus musculus cDNA clone 3336.18 5′ s	est	1137	218	I		1.2	0.08
X66084	M. musculus Pgp‘mRNA for CD44 (clone M4)	gene	65	24	MI		1.6	0.08
W34756	“mc32g09.r1 Soares mouse p3NMF19.5 Mus musculus cDNA clone 350272 5′ similar to	est	27	−19	D		1.7	0.08
M60847	“Mouse lipoprotein lipase (LPL) gene, exon 10”	gene	197	−720		1.4	0.08
M91380	“Mus musculus TGF-beta-inducible protein (TSC-36) mRNA, complete cds”	gene	962	182	I		1.2	0.07
AA114576	mo63h09.r1 Stratagene mouse heart (#937316) Mus musculus cDNA clone 558305 5′ s	est	84	28	I		1.5	0.07
D000613	Mouse mRNA for matrix Gla protein (MGP)	gene	1778	2781		1.2	0.07
AA119191	mp60h03.r1 Soares 2NbMT Mus musculus cDNA clone 573653 5′ similar to TR:G1017	est	248	−81	ME		1.3	0.07
W41722	mc67b11.r1 Soares mouse embryo NbME13.5 14.5 Mus musculus cDNA clone 353585	est	123	−52	ME		1.4	0.07
W62091	md84h04.r1 Soares mouse embryo NbME13.5 14.5 Mus musculus cDNA clone 375127	est	136	−49	ME		1.4	0.06
U33840	“Mus musculus TRAF-related protein (TRAFarrin) mRNA, complete cds”	gene	1	−28	D		˜1.5	0.06
W29434	mb99f07.r1 Soares mouse p3NMF19.5 Mus musculus cDNA clone 337573 5′ similar to	est	1188	198	I		1.2	0.06
M74227	“Mouse cyclophiiin C (cyp C) mRNA, complete cds”	gene	187	−59	D		1.3	0.06
X16705	Mouse mRNA for lamin B	gene	24	−15	D		1.6	0.06
L22472	“Mouse Bax alpha mRNA, complete cds”	gene	249	−66	M		1.3	0.05
X04663	Mouse mRNA for beta-tubulin (isotype Mbeta 5)	gene	1181	−190	D		1.2	0.05
AA003990	mg30c04.r1 Soares mouse embryo NbME13.5 14.5 Mus musculus CDNA clone 439302	est	59	−25 D		1.4	0.05
Y00769	Murine mRNA for integrin beta subunit	gene	813	−155	D		1.2	0.05
AA104459	mo55a03.r1 Life Tech mouse embryo 8 5dpc 10664019 Mus musculus cDNA clone 557	est	34	12	I		1.5	0.05
AA109714	mp49e12.r1 Barstead MPLRBI Mus musculus CDNA clone 572590 45′ similar to SW:SK	est	91	27	I		1.4	0.05
L25069	“Mouse catalase mRNA, complete cds”	gene	90	−34	D		1.4	0.05
AA144240	mr78c07.r1 Stratagene mouse heart (#937316) Mus musculus cDNAclone 603564 5′s	est	32	−16	MI		1.5	0.05
M21332	“Mouse MHC class III RD gene (H2-d and H2Sk haplotypes), complete cds”	gene	51	−22	D		1.4	0.05
X04017	Mouse mRNA for cysteine-rich glycoprotein SPARC	gene	1909	−232 D		1.1	0.04
D45210	“Mouse mRNA for zinc finger protein, complete cds”	gene	5	−22	MD	*	˜1.3	0.04
L29454	“Mouse fibrillin (Fbn-1) mRNA, complete cds”	gene	284	−62	MI		1.2	0.04
U13053	Mus musculus Ras-like protein (kir) mRNA, complete cds”	gene	28	17	I	*	˜1.4	0.04
AA103933	mo43h05.r1 Life Tech mouse embryo 15 5dpc 10667012 Mus musculus cDNA clone 55	est	27	24	I	*	˜1.4	0.04
D12907	“Mouse gene for 47-kDa heat shock protein(H8P47), exon 6”	gene	1386	169	I		1.1	0.04
L01640	Mus musculus D-type GI cyclin catalytic subunit (P8K-J3/CDK4) mRNA1 complete cds	gene	397	−79	MI		1.2	0.04
M64086	Mouse sp12 proteinase inhibitor (spi2/eb4) mRNA, complete cds”	gene	148	31	MI		1.3	0.03
M98035	Mus musculus guanine nucleotide exchange factor delta subunit (JGR1) mRNA, comp	gene	59	−17	D		1.3	0.03
AA038511	mi85h01.r1 Soares mouse p3NMF19.5 Mus musculus cDNA clone 473425 5′ similar to	est	412	−73	ML		1 .2	0.03
W77701	“me81b01.r1 Soares mouse embryo NbME13.5 14.5 Mus musculus cDNA clone 40192	est	12	−14	D	˜1.3	0.03
AA009169	“mh01g11.r1 Soares mouse embryo NbME13.5 14.5 Mus musculus cDNA clone 44128	est	62	−19	MI		1.3	0.03
AA146282	“mr06e08.r1 Soares mouse 3NbMS Mus musculus cDNA clone 596678 5′ similar to gb:	est	26	21	I	*	−1.3	0.03
M57891	Mouse complement component C2 mRNA, complete cds”	gene	27	16	I	*	−1.3	0.03
W29424	mb99b02.r1 Soares mouse p3NMF19.5 Mus musculus cDNA clone 33751 5 5′ similar to	est	191	−42	D		1.2	0.Q3
W65084	me01e06.ri Soares mous eembryo NbME13.5 14.5 Mus musculus cDNA clone 386242	est	24	29	MI	*	˜1.2	0.02
W62646	md82a07.r1 Soares mouse embryo NbME13.5 14.5 Mus musculus CDNA clone 37486	est	25	−8	D		1.3	0.02
U07159	Mus musculus medium chain acyl-CoA dehydrogenase mRNA, complete cds”	gene	29	−9 M(		1.3	0.02
L21973	“Mus musculus E2F1 mRNA, complete cds”	gene	30	−8	MI		1.3	0.02
U05809	“Mus musculus LAF1 transketolase mRNA, complete cds”	gene	142	22	MI		1.2 0.02
W34915	mc60c11.r1 Soares mouse embryo NbME13.5 14.5 Mus musculus cDNA clone 352916	est	69	−16	D		1.2	0.02
M81342	“BALB/c flbroblast growth factor receptor 3 (mFR3) mRNA, complete cds”	gene	4	−21	D		˜1.2	0.02
U37413	“Mus musculus guanine nucleotide-binding protein (Gna11) gene, exon 3-7,and comple	gene	136	−14	MD		1.1	0.01

TABLE 6

ISGs and IRGs identified from mouse embryonic fibroblast incubated

in the presence or absence of IFN-αBBDB in the presence or absence of

encephalomyocarditis virus

Sample (1) untreated cells,

Sample (2) cells treated for 16 h with 10,000 units per ml of IFN-αBBDB,

Sample (3) cells treated for 16 h with 10,000 units per ml of IFN-αBBDB followed by

infection with encephalomyocarditis virus at a multiplicity of infection of 10 plaque

forming units per cell for an additional 6 h.

Database: GenBank accession numbers

1 vs 2, control vs interferon

1 vs 3, control vs. interferon plus virus.

2 vs 3, interferon vs interferon plus virus

Diff, difference

I = those genes that were induced or upregulated by the treatment

D = those genes that were repressed or downregulated by the treatment

Fold C, fold change

Sig, significance factor

RNL +/+ - IFN/EMCV

vs 2

1 vs 3

2 vs 3

Database

EntrezDefinition

Seq

C

R

Dif

B

Fold C

Sig

Di

B

Fold C

Sig

Dif

B

Fold C

Sig

X56602

Mus musculus mRNA Interferon-induced 15-KDa protein

gene

B

N

I

*

˜165.

57.7

I

*

˜120.

45.56

D

1.4

0.4

U73037

“Mus musculus interferon regulatory factor 7 (mirf7) mRN

gene

C

N

I

*

˜117.

44.7

I

*

˜105.

41.26

NC

0

0

L32974

“Mouse interferon-inducible protein homologue mRNA, co

gene

D

N

I

*

44.3

25.6

I

*

59.4

32.9

I

1.3

0.3

L16894

“Mus musculus Cyclophilin C (CyCAP) mRNA, complete cd

gene

D

N

I

*

8.1

15.9

I

*

13.9

11.72

D

1.3

0.2

U22031

“Mus musculus 205 proteasome subunit Lmp7 (Lmp7d all

gene

A

N

I

*

˜3 3.2

15.7

I

*

˜23.4

11.11

D

1.4

0.2

U06924

“Mus musculus signal transducer and activator of transcri

gene

C

N

I

*

˜31.5

15.3

I

*

˜24.8

12.16

D

1.3

0.1

X04653

Mouse mRNA for Ly-6 alloantigen (Ly-6E.1)

geneD

N

I

8.1

12.3

I

6.6

8.95

D

1.2

0.2

U15636

“Mus musculus GTP binding protein (GTP2) mRNA, compl

gene

A

N

I

*

˜21.5

10.3

I

*

˜31.4

14.96

MI

1.5

0.2

M86829

“Mus musculus (crg-2) mRNA, complete cds”

gene

A

N

I

*

˜19.9

9.46

I

*

˜53.4

23.9

I

2.7

2.1

U19119

“Mus musculus G-protein-like LRG-47 mRNA, complete cd

gene

B

N

I

*

17.7

8.9

I

*

˜20.2

10.29

NC

0

0

L04262

“Mus musculus (clones p10a-[1.5n, 1.7]b and pG4-14)lysy

gene

D

N

I

I

11.1

8.27

I

13.2

10.28

NC

0

0

AA059700

mj77g08.r1 Soares mouse p3NMF19.5 Mus musculus cDNA

est

D

N

I

5.1

8.12

I

5

7.85

NC

0

0

L39223

“Mus musculus apolipoprotein D (apoD) mRNA, complete

gene

A

N

I

*

˜16.7

7.94

I

*

˜7.3

2.74

D

2.3

0.8

M27034

“Mouse MHC class 1 D-region cell surface antigen (D2d) g

gene

D

N

I

11.2

7.51

MI

9.7

6.13

NC

0

0

M55637

“Mus musculus HAM1 gene, complete cds”

gene

D

N

I

*

˜15.8

7.3

I

*

13.3

5.94

NC

0

0

M19681

“Mouse platelet-derived growth factor-inducible protein (J

gene

D

N

I

8.9

7.04

I

*

11.1

9.51

I

1.2

0.1

U44731

“Mus musculus putative purine nucleotide binding protein

gene

B

N

I

*

˜13.3

6.15

I

*

˜13.2

6.08

NC

0

0

U27838

“Mus musculus glycosyl-phosphatidyl-inositol-anchored p

gene

A

N

I

*

˜13.3

5.99

I

*

˜12.7

5.65

NC

0

0

AA013783

mh13a03.r1 Soares mouse placenta 4NbMP13.5 14.5 Mus

est

D

N

I

*

˜13.3

5.78

I

*

9

3.55

D

1.4

0.2

L32973

“Mouse thymidylate kinase homologue mRNA, complete c

gene

A

N

I

*

˜12.8

5.75

I

*

˜39.7

18.53

I

3.1

2.5

U47737

“Mus musculus thymic shared antigen-1 (TSA-1) gene, cc

gene

C

N

I

3.5

5.64

I

3.2

4.55

NC

0

0

X14194

Mouse mRNA for entactin

gene

A

N

I

8.8

5.61

I

6.8

3.75

D

1.3

0.1

D13664

Mouse mRNA for osteoblast specific factor 2 (OSF-2)

gene

D

N

I

8.8

5.35

I

7.5

4.21

D

1.2 0.1

X61172

Mouse mRNA for alpha-mannosidase II

gene

B

N

I

*

1.1

5.01

I

*

10.1

4.48

NC

0

0

X95580

M. musculus mRNA for hypoxia-inducible factor I alpha

gene

C

N

I

*

˜11.1

4.74

I

*

˜11.9

5.21

NC

0

0

X07699

Mouse nucleolin gene

gene

B

N

I

*

8.9

4.64

I

*

11.9

6.9

I

1.3

0.1

U15635

“Mus musculus IFN-gamma induced (Mg11) mRNA, compl

gene

A

N

I

*

˜10.5

4.39

I

˜13.8

6.23

NC

0

0

Y00769

Murine mRNA for integrin beta subunit

gene

A

N

I

4.5

4.31

I

4.6

4.37

NC

0

0

D14571

“Mouse mRNA for PEBP2b2 protein, complete cds”

gene

A

N

I

10.2

4.24

I

*

11.6

5.02

NC

0

0

D78188

Mouse mRNA for SCID complementing gene 2

gene

A

N

I

9.3

4.2

I

15.8

8.27

I

1.7

0.4

Z30970

M. musculus (Balb/C) TIMP-3 gene for metalloproteinase-3

gene

A

N

I

*

8.6

3.95

I

*

11.9

6.14

MI

1.4

0.1

U43084

“Mus musculus glucocorticoid-attenuated response gene 1

gene

C

N

I

*

˜9.5

3.91

I

*

˜33.5

15.85

I

3.5

2.7

D63902

“Mouse mRNA for estrogen-responsive finger protein, com

gene

C

N

I

*

˜8.6

3.78

I

*

˜10.3

4.74

NC

0

0

W55140

est

A

Y

I

7.9

3.77

I

8.9

4.52

NC

0

0

X16151

Mouse mRNA for early T-lymphocyte activation 1 protein

gene

A

N

I

4.4

3.75

I

6.1

6.79

I

1.4

0.3

X56548

M. musculus Np-b mRNA for purine-nucleoside phosphoryla

gene

A

N

I

4.9

3.43

I

4.5

2.91

NC

0

0

L38847

“Mus musculus hepatoma transmembrane kinase ligand (I-

gene

A

N

I

*

˜8.7

3.43

I

*

˜5.9

1.9

MC

1.5

0.1

U16162

“Mus musculus prolyl 4-hydroxylase alpha(I)-subunit mRNA

gene

A

N

I

4.1

2.98

I

2.4

0.77

D

1.7

0.6

D49382

“Mouse Nedd5 mRNA for DIFF6- or CDC3,10,11,12-like p

gene

A

N

I

5.4

2.97 I

6.3

3.84 NC

0

0

U65313

Mus musculus ras-GTPase-activating SH3-domain binding

gene

C N

I

6.6

2.96

I

7.1

3.39

NC

0

0

D90225

Mouse mRNA for OSF-1

gene

C

N

I

4.3

2.87

I

3.2

1.5

D

1.3

0.2

X64070

M. musculus gene for cation-dependent mannose-6-phosp

gene

D

N

I

*

˜7.8

2.84

I

*

˜9.1

3.57

NC

0

0

M60474

“Mouse myristoylated alanine-rich C-kinase substrate (MAF

gene

D

N

I

4.6

2.81

I

3.1.

1.13

D

1.5

0.3

U60329

“Mus musculus proteasome activator PA28 beta subunit r

gene

C

N

I

3.9

2.79

I

3.8

2.58

NC

0

0

M33212

“Mouse nucleolar protein NC38 mRNA, complete cds”

gene

A

N

I

3.9

2.78 I

4.7

3.96

I

1.2

0.1

M91380

“Mus musculus TGF-beta-inducible protein (TSC-36) mRN

gene

A

N

I

4

2.78

I

3.9

2.63

NC

0

0

M26071

“Mouse tissue factor (mtf) mRNA, complete cds”

gene

A

N

I

*

6.8

2.74

I

*

8.5

3.88

NC

0

0

M63630

“Mus musculus predicted GTP binding protein (IRG-47) mf

gene

D

N

I

*

˜7.2

2.74

I

*

˜7.5

2.92

NC

0

0

U63323

“Mus musculus translation initiation factor (Eif4g2) mRNA

gene

C

N

I

4

2.73

I

4.2

3.01

NC

0

0

AA162233

mn44h04.r1 Beddington mouse embryonic region Mus mu

est

C

N

I

*

˜7.4

2.67

I

*

˜8.4

3.23

NC

0

0

D13003

“Mouse mRNA for reticulocabin, complete cds”

gene

C

N

I

5.2

2.67

I

4.6

2.13

NC

0

0

U12763

“Mus musculus OX40 ligand (ox401) mRNA, complete cds”

gene

D

N

D

*

˜7.0

2.65

D

˜7.0

2.62

NC

0

0

U16740

“Mus musculus capping protein alpha 1 subunit mRNA, pa

gene

A

N

I

5.1

2.56

I

5.7

3.11

NC

0

0

W66636

me22g10.r1 Soares mouse embryo NbME13.5 14.5 Mus

est

A

N

I

*

6.9

2.55

I

*

10.2

4.56

I

1.5

0.2

M88242

Mouse glucocortoid-regulated inflammatory prostaglandin

gene

D

N

I

˜7.0

2.51

I

*

˜39.0

18.23

I

5.6

7.2

X70058

M. musculus cytokine gene

gene

D

N

I

3.6

2.48

I

5.1

5.17

I

1.4

0.4

X70296

M. musculus PN-1 mRNA for protease-nexin 1

gene

B

N

I

4.3

2.43

I

3.1

1.22

D

1.4

0.1

U33626

“Mus musculus PML isoform 1 (Pm1) mRNA, complete cds

gene

B

N

I

*

5.1

2.43

I

3.2

0.93

D

1.6

0.2

U60328

“Mus musculus proteasome activator PA2B alpha subunit

gene

C

N

I

*

3.7

2.42

I

3.3

1.87

NC

0

0

AA022526

mg54a04.r1 Soares mouse embryo NbMEt3.5 14.5 Mus m

est

B

N

I

*

3.4

2.42

I

*

2.6

1.26

D

1.3

0.2

X16319

Mouse mRNA for 54K subunit of signal recognition particle

gene

C

N

I

*

˜6.7

2.4

I

*

˜14.4

6.74

I

2.2

0.6

X89650

M. musculus mRNA for Rab7 protein

gene

B

N

I

4.6

2.4

I

4.6

2.36

NC

0

0

W63809

“md84a12.r1 Soares mouse embryo NbME13.5 1.4.5 Mus

est

D

N

I

*

5.9

2.4

I

5.6

2.17

NC

0

0

M21285

“Mouse stearoyl-CoA desaturase gene, exon 6”

gene

A

N

I

3.9

2.39

I

2.3

0.67

D

1.7

0.4

X56304

Mouse mRNA for tenascin

gene

A

N

I

3.2

2.38 I

3.1

2.3

NC

0

0

D85414

“House mouse; Musculus domesticus embryo neural precu

gene

C

N

I

4.4

2.33

I

3.8

1.72

NC

0

0

U20532

“Mus musculus p45NF-E2 related factor 2 (Nrf 2) mRNA,

gene

A

N

I

*

˜6.8

2.32

I

*

˜5.8

1.77

NC

0

0

M33960

“Mouse plasminogen activator inhibitor (PAI-1) mRNA, co

gene

A

N

I

2.6

2.3

I

5.4

11.64

I

2.1

2.6

XS9990

M. musculus alpha-catenin gene for alpha-catenin

gene

A

N

I

4

2.24

I

3.7

1.86

NC

0

0

U37720

“Mus musculus CDC42 mRNA, complete cds”

gene

A

N

I

3.9

2.23

I

3.9

2.13

NC

0

0

L02526

“Mouse protein kinase (MEK) mRNA, complete cds

gene

D

N

I

4.2

2.23

I

3.5

1.5

NC

0

0

AA030569

m126g10.r1 Soares mouse embryo NbME13.5 14.5 Mus n

est

B

N

MD

˜6.6

2.17

NC

0

0

NC

*

0

0

AA072961

“mm80b02.r1 Stratagene mouse embryonic carcinomaRA

est

C

N

I

*

˜6.3

2.16

I

*

˜5.2

1.54

NC

0

0

M87276

Mouse thrombospondin 1 mRNA, complete cds”

gene

A

N

I

3.3

2.14

I

4.9

4.91

I

1.5

0.4

D17666

“Mousese gene for mitochondrial stress-70 protein (PBP74/

gene

D

N

I

3.8

2.13

I

3.5

1.77

NC

0

0

M86736

“Mouse acrogranin mRNA, complete cds”

gene

D

N

I

3.2

2.1

I

2.6

1.19

D

1.2

0.1

L02918

“Mouse procollagen type V alpha 2 (Col5a-2) mRNA, com

gene

D

N

I

I 2.7

2.06

I

2.1

1

D

1.3

0.2

L20276

“Mouse biglycan (Bgn) mRNA, complete cds”

gene

A

N

I

2.1

2.01

I

1.8

1.03

D

1.2

0.2

M22479

“Mouse tropomyosin isoform 2 mRNA; complete cds”

gene

A

N

I

2.8

1.99

I

3

2.42

NC

0

0

U35142

“Mus musculus retinoblastoma-binding protein (mRbAp46

gene

A

N

I

3.7

1.97

I

3.1

1.25

D

1.2

0.1

X52574

Mouse mRNA from Mov10 locus

gene

B

N

I

4.6

1.95

I

3

0.76

D

1.5

0.2

U14172

“Mus musculus p162 protein mRNA, complete cds”

gene

B

N

I

*

6

1.93

I

*

7.3

2.64

MI

1.2

0

X80937

M. musculus mRNA for RIP1 protein

gene

B

N

MI

*

˜5.9

1.86

*

˜5.7

1.71

NC

0

0

U27830

“Mus musculus mSTI1 mRNA, complete cds”

gene

A

N

I

2.8

1.84

I

2.8

1.87

NC

0

0

AA138777

“mq40g12.r1 Barstead MPLRB1 Mus musculus cDNA clon

est

D

N

I

3.7

1.82

I

3.9

2.01

NC

0

0

L12447

“Mus musculus insulin-like growth factor binding protein 5

gene

A

N

I

3.3

1.82

I

2.7

1.14

NC

0

0

M36332

“Mouse insulin-like growth factor II (IGF-II) gene, exons 5

gene

D

N

I

2.8

1.82

I

2.1

0.74

D

1.4

0.3

L18888

“Mus musculus calnexin mRNA, complete cds”

gene

C N

I

5

1.8

I

4.6

1.47

NC

0

0

M21065

“Mouse interferon regulatory factor 1 mRNA, complete cc

gene

D N

I

*

˜5.6

1.79

I

*

˜11.3

5

I

2

0.6

L07918

“Mus musculus GDP-dissociation inhibitor mRNA, preferen

gene

A

N

I

3.5

1.79

I

3.3

1.47

NC

0

0

M90364

“Mouse (clone PMCAT) beta-catenin mRNA, complete cds

gene

D

N

I

*

˜5.7

1.78

I

*

˜3.9

0.86

NC

0

0

W51428

est

A

Y

I

*

˜5.8

1.77

I

*

˜5.7

1.73

NC

0

0

A038626

“m193b07.r1 Soares mouse p3NMF19.5 Mus musculus cD

est

B

N

MI

*

4.3

1.73

I

3.3

0.94

NC

0

0

U37413

“Mus musculus guanine nucleotide-binding protein (Gna11

gene

A

N

I

4.1

1.72

I

4.5

2.09

NC

0

0

M21952

“Mouse macrophage colony-stimulating factor (4 kb) mR

gene

D

N

I

3.9

1.71

I

5.7

3.47

I

1.4

0.2

U03283

“Mus musculus C3H cytochrome P450 (Cyp1b1) mRNA, c

gene

C

N

I

4

1.7

I

6.9

4.81

I

1.8

0.5

U79550

“Mus musculus Slug zinc finger protein (Slugh) mRNA, co

gene

C

N

I

5

1.65

I

4.6

1.42

NC

0

0

U69488

“Mus musculus viral envelope like protein (G7e) gene, cor

gene

C

N

I

3.9

1.63

I

3

0.91

NC

0

0

J03776

“Mouse down regulatory protein (rpt-1r) of interleukin 2 r

gene

A

N

I

*

˜5.4

1.63

I

*

˜3.5

0.71 D

1.5

0.1

W62326

md97c08.r1 Soares mouse embryo NbME13.5 14.5 Mus m

est

A

N

I

*

˜5.4

1.62

I

*

2

0.15

D

2.6

0.7

X60672

M. musculus mRNA for radixin

gene

C

N

I

*

˜5.5

1.61

I

*

˜8.8

3.39

NC

0

0

X81323

M. musculus mRNA for tripeptidyl peptidase II

gene

B

N

I

*

˜5.2

1.56

I

*

˜5.6

1.73

NC

0

0

U43844

“Mus musculus cyclin D3 gene, complete cds”

gene

D

N

I

3.5

1.55

I

2.6

0.79

D

1.3

0.1

X13605

Murine mRNA for replacement variant histone H3.3

gene

B

N

I

3.2

1.64

I

3.7

2.35

NC

0

0

J04179

“Mouse chromatin nonhistone high mobility group protein

gene

D

N

I

3

1.54

I

3.5

2.29

NC

0

0

AA00813

“6mg68g11.r1 Soares mouse embryo NbME13.5 14.5 Mus

est

D

N

I

2.6

1.53

I

3.1

2.39

NC

0

0

AA060167

mj72h03.r1 Soares mouse p3NMF19.5 Mus musculus cDNA

est

B

N

I

*

˜5.2

1.53

NC

*

0

0

D

2.2

0.4

M31131

“Mouse neural cadherin (N-cadherin) mRNA, complete cds

gene

D

N

I

*

˜5.4

1.52

I

˜6.4

2.08

NC

0

0

AA118062

mn07h01.r1 Beddington mouse embryonic region Mus mus

est

C

N

I

3.7

1.52

I

3.2

1.14

NC

0

0

M73696

“Murine Givr-1 mRNA, complete cds”

gene

A

N

I

4.1

1.51

I

5.9

3.1

I

1.5

0.2

AA003876

mg79c01.r1 Soares mouse embryo NbME13.5 14.5 Mus r

est

D

N

I

*

4.7

1.51

I

*

2.5

0.35

NC

0

0

X53584

“Mouse mRNA for HSP60 protein (clones 3T3-7, -9, and-

gene

B

N

I

2.8

1.49

I

3

1.67 NC

0

0

U51992

“Mus musculus interferon stimulated gene factor 3 gamma

gene

B

N

I

*

˜5.2

1.48

I

*

˜3.5

0.63

NC

0

0

D85904

“Mouse mRNA for apg-2, complete cds”

gene

C

N

I

3.7

1.47

I

5

2.68

I

1.3

0.1

W97102

“mf61h08.r1 Soares mouse embryo NbME13.5 14.5 Mus m

est

D

N

I

*

˜5.1

1.47

I

*

˜6.7

2.32

NC

0

0

M94087

“M. musculus mATF4 (mTR67) mRNA, complete cds”

gene

A

N

I

2.1

1.47

I

1.9

1.05

NC

0

0

U34883

“Mus musculus ATP sulfurylase/APS kinase mRNA, comple

gene

A N

I

4.3

1.47

I

3.2

0.76

D

1.3

0.1

L40406

“Mus musculus heat shock protein (hsp-E71) mRNA, comp

gene

B

N

I

3.2

1.47

I

1.5

0.13

D

2.1

0.7

D21297

“Mouse mRNA for peripheral-type benzodiazepine recepto

gene

C

N

I

2.5

1.46

I

2.1

0.88

NC

0

0

X56045

Mouse mRNA (clone lambda-19) for hypothetical protein

gene

A

N

I

2.9

1.45

I

3.1

1.74

NC

0

0

X17459

Mouse mRNA for J kappa RS-binding protein

gene

B

N

I

4.7

1.45

I

4.2

1.14

NC

0

0

AA048974

mj50d06.r1 Soares mouse embryo NbME13.5 14.5 Mus n

esy

B

N

I

*

˜5.0

1.45

NC

*

0

0

NC

0

0

J05287

“Mouse lysosoma; membrane glycoprotein (LAMP2 ) mRN

gene

D N

I

*

4.6

14.2

I

*

3.5

0.79

MC

1.3

0.1

D42048

“Mouse mRNA for sqalene epoxidase, complete cds”

gene

B

N

I

3.2

1.42

NC

0

0

D

3.4

2

W82720

mf07g03.r1 Soares mouse p3NMF19.5 Mus musculus cDNA

est

B

N

I

3.6

1.41

I

3.7

1.47

NC

0

0

L35556

“Mus musculus Int-6 mRNA, complete cds”

gene

A

N

I

3.1

1.39

I

4.3

2.94

I

1.4

0.2

X80508

M. musculus YAP65 mRNA

gene

B

N

I

3.4

1.39

I

3.2

1.18

NC

0

0

AA163272

mr27b12.r1 Soares mouse 3NbMS Mus musculus cDNA c

est

D

N

I

3.8

1.37

I

3.2

0.96

I

0

0

U20326

“Mus musculus cellular nucleic acid binding protein mRNA

gene

A

N

I

2.9

1.36

I

3.4

1.88

NC

0

0

D28599

“Mouse mRNA for proteoglycan, PG-M”

gene

A

N

I

*

5

1.36

I

*

5.7

1.75

NC

0

0

X61232

Mouse mRNA for carboxypeptidase H

gene

A

N

I

3.5

1.36

NC

0

0

NC

0

0

D26089

“Mouse mRNA for mcdc21 protein, complete cds”

gene

C

N

I

4.1

1.35

I

5.1

2.09

NC

0

0

L09104

“Mus musculus glucose phosphate isomerase mRNA, 3′ er

gene

A

N

I

*

2.5

1.35

I

1.7

0.35

D

1.5

0.4

X14425

Mouse mRNA for profilin

gene

C

N

D

1.9

1.34

D

2.2

2.06

NC

0

0

M97635

M. musculus helix-loop-helix transcription factor sequence

gene

C N

I

4.6

1.29

I

5.1

1.62

NC

0

0

AA097203

mm35h09.r1 Stratagene mouse skin (#937313) Mus musc

est

C

N

I

*

˜4.1

1.28

I

*

˜3.4

0.9

NC

0

0

D42124

“Mouse mRNA for MafK1 complete cds”

gene

A

N

I

4.5

1.27

I

6.1

2.28

NC

0

0

AA165782

mt74e04.r1 Soares mouse lymph node NbMLN Mus musculus

est

D

N

I

3.4

1.27

I

3.3

1.14

NC

0

0

M13227

Mouse enkephalin mRNA

gene

D

N

I

*

4.6

1.27

I

*

3.5

0.72

NC

0

0

L07803

“Mouse thrombospondin 2 (THBS2) mRNA, complete cds”

gene

A

N

I

2.6

1.27

I

1.9

0.49

D

1.4

0.2

LJ1613

“Mus musculus proteasome (Imp2) gene, complete mRNA

gene

C

N

I

*

˜4.3

1.26

I

*

˜3.5

0.86

NC

0

0

AA118758

mp59h02.r1 Soares 2NbMT Mus musculus cDNA clone 573

est

D

N

I

*

4.3

1.25

I

*

4.8

1.59

NC

0

0

W10645

ma39f12.r1 Soares mouse P3NMF19.5 Mus musculus cD

est

D

N

I

*

˜4.8

1.25

NC

*

0

0

NC

0

0

DB6729

“Mouse mRNA for topoisomerase-inhibitor suppressed, co

gene

D

N

I

2.8

1.24

I

3.9

2.81

I

1.4

0.3

W71889

“meA6b06.r1 Soares mouse embryo NbME13.5 14.5 Musr

est

A

N

I

2.9

1.23

I

2.7

1

NC

0

0

D86726

“Mouse mRNA for mMIS5, complete cds”

gene

C

N

I

2.8

1.22

I

2.6

1.03

NC

0

0

AA016858

mh35f03.r1 Soares mouse placenta 4NbMP.13.5 14.5 Mus

est

B

N

I

*

˜4.6

1.22

I

*

˜3.0

0.48

MC

1.5

0.1

X77952

M. musculus (CD1) endoglin mRNA

gene

B

N

I

*

˜4.7

1.21

I

*

˜4.6

1.19

NC

0

0

AA145371

mr10b08.r1 Soares mouse 3NbMS Mus musculus cDNA clo

est

D

N

I

*

4.1

1.21

I

*

3.9

1.05

NC

0

0

X92665

M. musculus mRNA for ubiquitin-conjugating enzyme UbcM

gene

B N

MI

4

1.2

I

3.5

0.92

NC

0

0

L29454

“Mouse fibriliin (Fbn-1) mRNA, complete cds”

gene

A

N

I

2.6

1.2

I

1.3

0.07

D

2

0.9

U70622

“Mus musculus lysophosphatidic acid receptor (vzg-1) mR

gene

A

N

I

*

˜4.5

1.19

I

*

˜4.8

1.33

NC

0

0.

D10061

Mouse mRNA for DNA topoisomerase I

gene

A

N

I

*

˜4.4

1.18

I

*

˜7.1

2.63

NC

0

0

X53753

Mouse mRNA for nonmuscle tropomyosin 5

gene

A N

I

2.3

1.18

I

2

0.76

NC

0

0

U46690

“Mus musculus ATP-dependent RNA helicase mRNA, partia

gene

C

N

I

2.7

1.18

I

2.1

0.51

D

1.3

0.1

D78645

“Mouse mRNA for 78 kDa glucose-regulated protein, com

gene

D

N

I

2.5

1.17

I

2.7

1.44

NC

0

0

X16857

Mouse mRNA f4HSP86 heat-shock protein

gene

D

N

I

3.4

1.16

I

5.4

3

I

1.6

0.3

U25633

“Mus musculus tumor-assoclated membrane protein (TMP

gene

C

N

I

2.3

1.15

I

2.9

2.11

NC

0

0

U41765

“Mus musculus metalloprotease/disintegrin/cysteine rich

gene

B

N

I

*

˜4.4

1.14

I

*

˜4.9

1.39

NC

0

0

AA038511

m185h01.r1 Soares mouse p3NMF19.5 Mus musculus cDNA

est

A

N

I

2.2

1.14

I

1.9

0.69

NC

0

0

AA123463

mn23e03.r1 Eddington mouse embryonic region Mus mu

est

C

N

I

2.4

1.13

I

2.9

1.89

NC

0

0

M62867

“Mouse Y box transcription factor (MSY-1) mRNA, comple

gene

A

N

I

2.1

1.11

I

3

3.23

NC

0

0

X58196

M. musculus H19 mRNA

gene

A

N

I

1.9

1.11

I

1.4

0.29

D

1.3

0.4

U10406

“Mus musculus capping protein beta-subunit isoform 1 mF

gene

A N

I

2.2

1.1

I

2.4

1.35

NC

0

0

AA002277

mg42b03.r1 Soares mouse embryo NbME13.5 14.5 Mus

est

B

N

I

3.3

1.1

I

3

0.87

NC

0

AA139989

mq95e05.r1 Stratagene mouse heart (#937316) MuS musc

est

A

N

I

*

3.9

1.1

I

*

3.1

0.63

NC

0

0

Z37110

M. musculus mRNA for cyclin G

gene

B

N

I

*

4

1.09

I

*

5.5

2.02

NC

0

0

J05185

“Mouse protein disulfide isomerase (ERP59) mRNA, compL

gene

A N

I

2

1.09

I

2

1.06

NC

0

0

M86390

Mus domesticus moesin mRNA, 3′ end”

gene

D

N

I

4

1.08

I

4.9

1.64

NC

0

0

Z31553

“M. musculus (129/Sv) Cctb mRNA for CCT (chaperonin co

gene

B

N

I

2.3

1.08

I

2.3

1.07

NC

0

0

U75680

“Mus musculus histone stem-loop binding protein (SLBP)

gene

C

N

I

*

˜4.3

1.08

I

*

˜3.6

0.72

NC

0

0

U77630

“Mus musculus adrenomedullin precursor mRNA, complete

gene

C

N

I

3.1

1.08

NC

0

0

D

4

2.3

X99915

“M. musculus HMGI-C gene, exon 1, and joined CDS”

gene

B

N

I

3.2

1.06

I

4.8

2.64

I

1.5

0.2

M13685

“Mouse prion protein (PrP) mRNA, complete cds”

gene

A

N

I

2.9

1.06

I

3.5

1.67

MI

1.2

0.1

M64640

“Mouse Mov-34 36 kD protein gene, exon 7”

gene

D

N

I

2.9

1.04

I

3

1.19

NC

0

0

X63100

M. musculus mRNA for connexin45

gene

B

N

I

*

˜4.3

1.04

I

*

˜4.1

0.92

NC

0

0

X58876

Murine mdm2 mRNA for mdm2 protein

gene

B

N

I

*

˜4.2

1.03

I

I

*

˜4.2

1.03

NC

0

0

M75122

“Mouse acid beta-galactosidase (GLB-1) gene, exon 16”

gene

D

N

I

*

˜4.3

1.01

I

*

˜2.8

0.38

NC

0

0

M91458

“Mus musculus sterol-carrier protein X mRNA, complete c

gene

A

N

I

4.1

1

I

4.5

1.24

NC

0

0

J03880

“Mouse UDP-galactose:N-acetylglucosamine galactosyltrar

gene

D

N

I

*

3.8

1

I

*

3.5

0.85

NC

Q

0

AA111149

“mp10e11.r1 Life Tech mouse embryo 8 5dpc 10664019

est

C

N

I

2.2

1

I

2.1

0.79 NC

0

0

X979982

“M. musculus mRNA for poly(C)-binding protein, splice vari

gene

A

N

I

2.4

1

NC

0

0

D

1.6

0.4

L25069

“Mouse catalase mRNA, complete cds”

gene

D

N

I

3.7

0.99

I

3.4

0.8

NC

0

0

W18503

“mb88b08.r1 Soares mouse p3NMF19.5 Mus musculus cD

est

D

N

I

3.1

0.99

I

2.4

0.48

D

1.3

0.1

M70641

“Mouse FISP-12 protein (fisp-12) gene, complete cds”

gene

D

N

I

2.2

0.98

I

3.7

3.84

I

1.7

0.9

W48519

est

A

Y

I

*

˜4.1

0.98

I

*

˜6.1

2.05

NC

*

0

0

AA003323

mg51g09.r1 Soares mouse embryo NbME13.5 14.5 Mus m

est

A

N

I

2.5

0.98

I

1.9

0.36

D

1.4

0.2

AA153032

“mr17e03.r1 Soares mouse 3NbMS Mus musculus cDNA

est

D

N

D

˜4.0

0.97

D

˜4.0

0.97

NC

0

0

Z25524

“M. musculus integrin assoclated protein mRNA, complete

gene

D

N

I

*

˜4.2

0.97

I

*

˜3.0

0.44

NC

1.4

0.1

D12713

“Mouse DNA for MSEC66, complete cds”

gene

C

N

I

*

4

0.96

I

*

4

0.96

NC

0

0

X81058

M. musculus tex261 mRNA

gene

C

N

I

3.2

0.96

I

2.9

0.76

NC

0

0

AA110543

m196e01.r1 Stratagene mouse kidney (#937315) Mus musc

est

C

N

I

2.9

0.95

I

3.2

1.17

NC

0

0

W20828

mb91g06.r1 Soares mouse p3NMF19.5 Mus musculus cDN

est

D

N

D

1.9

0.95

D

1.4

0.32

I

1.3

0.3

L13968

“Mouse delta/YY1/NF-E1/UCRBP transcription factor exor

gene

D

N

I

*

˜4.1

0.93

I

*

˜4.0

0.91

NC

0

0

M58566

“Mouse TJS11 primary response gene, complete cds”

gene

A

N

I

3.4

0.93

MI

2.6

0.49

MC

1.3

0.1

U05245

“Mus musculus BALB/c invasion inducing protein (Tiam-1)

gene

C

N

I

*

˜3.8

0.92

NC

*

0

0

NC

0

0

Z11997

M. musculus mRNA for non-histone chromosomal high-mo

gene

C

N

I

*

˜4.1

0.9

I

*

˜3.1

0.48

NC

0

0

U40375

“Mus musculus Supt6h mRNA, complete cds”

gene

C

N

I

*

3.9

0.89

I

*

2.7

0.38

NC

0

0

L42293

“Mus musculus acyl-coenzyme A:cholesterol acyltransfera”

gene

A

N

I

3

0.88

I

4.5

2.14

I

1.5

0.2

W62742

md71c06.r1 Soares mouse embryo NbME13.5.14.5 Mus mL

est

A

N

I

*

3.6

0.88

I

*

4.8

1.65

NC

0

0

D86232

“House mouse; Musculus domesticus mRNA for Ly-6C var

gene

D

N

I

*

3.4

0.88

I

*

3.2

0.75

NC

0

L29441

“Mus musculus mRNA, complete cds”

gene

A

N

I

2.7

0.88

I

2.1

0.41

D

1.3

0.1

W98349

mg13a01.r1 Soares mouse embryo NbME13.5 14.5, Mus r

est

A

N

MI

*

3.7

0.88

I

0

0

NC

0

0

Z17804

M. musculus p120 gene

gene

B

N

I

*

˜3.9

0.88

NC

*

0

0

D

1.7

0.2

AA003022

mg39h11.r1 Soares mouse embryo NbME13.5 14.5 Mus mu

est

D

N

I

*

3.7

0.87

I

*

3.7

0.87

NC

0

0

M63114

“Mouse surfeit locus surfeit 4 protein mRNA, complete cd

gene

A

N

I

2.4

0.86

I

3

1.53

I

1.2

0.1

AA038437

m185f02.r1 Soares mouse p3NMF19.5 Mus musculus cDNA

est

B

N

I

2.7

0.86

I

2.4

0.64

NC

0

0

J00424

“Mouse interferon-beta; 12S fraction mRNA, 3′ end”

gene

D

N

I

*

3.9

0.86

I

*

3

0.46

NC

0

0

AA015026

mh26103.r1 Soares mouse placenta 4NbMP13.5 l4.5 Mus

est

B

N

MI

*

4

0.86

NC

*

0

0

NC

*

0

0

X57024

Murine GLUD mRNA for glutamate dehydrogenase

gene

B

N

I

3

0.85

I

3.6

1.25

NC

0

0

X59379

Mouse mRNA for amyloid beta precursor (protease nexin 1

gene

D

N

I

2.4

0.85

I

2.6

0.99

NC

0

0

W14540

mb24c01.r1 Soares mouse p3NMF19.5.Mus musculus cD”

est

D

N

I

*

˜3.9

0.85

NC

*

0

0

MC

*

3.8

1.3

U20086

“Mus. domesticus nuclear binding factor NF2d9 mRNA, co

gene

A

N

I

*

˜3.8

0.84

I

*

˜3.4

0.66

NC

0

O

X63535

M. musculus ufo mRNA

gene

B

N

I

2.2

0.84

I

2

0.64

NC

0

0

U79716

Mus musculus ajuba (Ajuba) mRNA, complete cds”

gene

C

N

I

2.9

0.84

NC

0

0

NC

1.4

0.1

X59728

M. musculus mRNA for gas5 growth arrest specific protein

gene

B

N

I

2.8

0.83

I

3.3

1.21

NC

0

0

AA124715

mq81h11.r1 Stratagene mouse melanoma (#937312) Mus m

est

C

N

I

2.1

0.83

I

1.9

0.62

NC

0

0

U18869

“Mus musculus mitogen-responsive 96 kDa phosphoprotei

gene

C

N

I

*

3.5

0.83

I

*

3

0.59

NC

0

0

X90875

M. musculus mRNA for FXR1 protein

gene

B

N

I

*

˜3.7

0.82

I

*

˜5.8

1.88

NC

0

0

J03484

“Mouse laminin B2 chain mRNA, complete cds”

gene

D

N

I

3.1

0.81

I

2.6

0.5

NC

0

0

AA118121

“mn07h07.r1 Beddington mouse embryonic region Mus mus

est

A

N

I

3.1

0.81

I

2.5

0.47

NC

0

0

X66032

M. musculus mRNA for cyclin B2

gene

B

N

I

*

˜3.6

0.8

I

*

˜4.2

1.08

NC

0

0

X80686

M. musculus mRNA for C5 component of protease

gene

D

N

D

2

0.8

D

1.6

0.37

MI

1.2

0.1

AA144078

mq53g12.r1 Soares 2NbMT Mus musculus cDNA clone 58

est

A

N

I

3.9

0.8

NC

0

0

MC

1.9

0.3

M72414

“Mouse microtubule-associated protein 4 (MAP4) mRNA

gene

A

N

I

3

0.8

I

0

0

MC

1.5

0.2

XS9520

“Mouse CCK gene for cholecystokinin, exon 1”

gene

D

N

I

2.5

0.79

I

3.8

2.09

I

1.5

0.3

Y00094

Mouse mRNA for ras-related YPT1 protein

gene

B

N

I

2.2

0.78

I

2.7

1.42

NC

0

0

M32745

“mouse transforming growth factor beta-3 mRNA, comple

gene

A

N

I

2.6

0.78

I

1.6

0.17

D

1.6

0.2

D87663

“House mouse; Musculus domesticus mRNA for 14-3-3 ep

gene

B

N

I

2

0.77

I

2.2

0.92

NC

0

0

U53456

“Mus musculus protein phosphatase 1cgamma (PP1cgamr

gene

D

N

I

2.4

0.77

I

2.5

0.79

NC

0

0

AA103538

“mo40h06.r1 Life Tech mouse embryo 15 5dpc 10667012

est

C

N

I

*

3.7

0.77

NC

*

0

0

NC

0

0

M95200

“Mouse vascular endothelial growth factor mRNA, comple

gene

A

N

I

3.1

0.76

I

3.7

1.17

NC

0

0

X83577

M. musculus mRNA for K-glypican

gene

B

N

I

3.1

0.76

MI

2.3

0.33

NC

0

0

AA072911

mm72h12.r1 Stratagene mouse macrophage (#937306) M

est

C

N

I

*

3.4

0.75

I

*

4.1

1.13

NC

0

0

U14648

“Mus musculus putative myelin regulatory factor 1 mRNA

gene

D

N

I

2.6

0.75

I

2.7

0.88

NC

0

0

L22482

“Mus musculus HIC-5 mRNA, complete cds”

gene

A N

I

2.1

0.75

I

2.1

0.82

NC

0

0

M83749

“Mouse D-type cyclin (CYL2) mRNA, complete cds”

gene

D

N

I

2.4

0.75

I

2.4

0.8

NC

0

0

U47543

“Mus musculus NGFI-A binding protein 2 (NAB2) mRNA, c

gene

C

N

MI

3

0.75

I

2.3

0.38

NC

0

0

M211T7

“Mouse interferon-induced Mx1 protein gene conferring s

gene

A

N

I

*

3.7

0.74

I

*

7.8

2.97

I

2.1

0.5

AA002759

mg45a11.r1 Soares mouse embryo NbME13.5 14.5 Mus r

est

B

N

I

2.6

0.74

I

3.3

1.43

I

1.3

0.1

W55556

est

A

Y

I

*

˜3.1

0.74

I

*

˜3.3

0.81

NC

0

0

U07617

“Mus musculus Grb2 adaptor protein (grb2) mRNA, comp

gene

B

N

I

*

3.6

0.74 I

*

3.2

0.58

NC

0

0

AA032596

mi29e04.r1 Soares mouse embryo NbME13.5 14.5 Mus m

est

B

N

I

2.6

0.74

I

2

0.35

NC

0

0

L12030

“Mus musculus cytokine (SDF-1-beta) mRNA, complete cc

gene

B

N

I

2.5

0.74

I

1.7

0.2

D

1.5

0.2

X52046

M. musculus COL3A1 gene for collagen alpha-I

gene

B

N

I

1.7

0.74

I

1.3

0.15

D

1.3

0.3

X78709

M. musculus NRF1 mRNA

gene

B

N

I

2.8

0.74

NC

0

0

D

1.7

0.3

X52101

Mouse mRNA for a 25kDa nuclearprotein found in murine

gene

B

N

I

*

3

0.74

NC

*

0

0

NC

0

0

U37353

“Mus musculus proteinphosphatase 2A B′alpha3 reguato

gene

B

N

I

*

˜3.7

0.73

I

*

˜5.1

1.41

MI

1.4

0.1

L22355

“Mus musculus vascular adhesion cell molecule-1 (VCAM1

gene

D

N

I

*

3.1

0.73

I

*

3.1

0.73

NC

0

0

AA153021

mq67e05.r1 Soares 2NbMT Mus musculus cDNA clone 583

est

D

N

I

*

˜3.3

0.72

I

*

˜11.9

5.46

I

3.6

2

W21013

mb80g05.r1 Soares mouse p3NMF19.5 Mus musculus cD

est

D

N

D

1.8

0.72

D

2

0.92

NC

0

0

W08454

mb50a10.r1 Soares mouse p3N.MF19.5 Mus musculus cD

est

C

N

I

2.5

0.72

I

1.9

0.31

D

1.3

0.1

U16163

“Mus musculus prolyl 4-hydroxylase alpha(II)-subunit mRN

gene

A N

I

2.3

0.72

NC

0

0

D

1.7

0.4

Y07836

M. musculus mRNA for basic-helix-loop-helix protein

gene

C

N

I

*

˜3.7

0.72

NC

*

0

0

NC

0

0

W55283

est

A

Y

I

*

˜3.4

0.71

I

*

˜4.6

1.27

NC

0

0

L00681

“Mus musculus Unp mRNA, complete cds”

gene

A

N

I

2.9

0.71

I

2.1

0.27

MI

1.4

0.1

W90947

mf82f08.r1 Soares mouse embryo NbME13.5 14.5 Mus mu

est

A

N

MI

*

˜3.5

0.71

NC

*

0

0

NC

*

0

0

X51397

Murine MyD88 mRNA induced by interleukin-6

gene

B N

I

*

3.1

0.7

I

*

5.1

1.98

NC

0

0

D90151

“Mouse mRNA for CArG-binding factor-A, complete cds”

gene

D

N

I

1.9

0.7

I

2.3

1.29

NC

0

0

D38379

Mouse mRNA for pyrubate kinase M

gene

B

N

I

1.6

0.7

I

1.4

0.39

NC

0

0

J03520

“Mouse tissue plasminogenactivator mRNA, complete cd

gene

A N

I

3

0.7

I

2.4

0.36

NC

0

0

M69260

“Mouse lipocortin I gene, exon 13”

geneD N I

1.9

0.69

I

3.1

2.83

I

1.6

0.8

U06670

“Mus musculus very low densitylipoprotein receptor mRN

geneA N I

3.4

0.69

I

1.8

0.1 D

1.9

0.3

D87901

“Mouse mRNA for ARF4, complete cds”

gene

C

N

I

1.9

0.68

I

2.2

1.06

NC

0

0

AA058163

mj59c08.r1 Soares mouse embryo NbME13.5 14.5 Mus rr

est

B

N

D

1.6

0.68

0

1.7

0.87 NC

0

0

Z14044

M. musculus mRNA for valosin-containing protein

gene

B

N

I

2.4. 0.68

I

2.5

0.73

NC

0

0

W11011

ma47a11.r1 Soares mouse p3NMF19.5 Mus musculus cD

est

C

N

I

*

˜3.4

0.68

I

*

˜3.3

0.65

NC

*

0

0

X74438

M. musculus PTP35 mRNA

gene

A

N

I

*

3.2

0.68

I

*

2.9

0.56

NC

0

0

M74753

“Mouse myosin heavy chain mRNA, 3′ flank”

gene

A

N

I

*

˜3.6

0.68

I

*

0

0

NC

0

0

X64414

M. musculus mRNA for low density lipoprotein receptor

bene

B

N

I

2.4

0.68

NC

0

0

D

3

1.5

D50086

“Mouse mRNA for neuropilin, complete cds”

gene

B

N

I

3.3

0.67

I

5.4

1.91

NC

0

0

X14432

Mouse mRNA for thrombomodulin

gene

B

N

I

2.8

0.67

I

4.1

1.58

NC

0

0

U17162

“Mus musculus bcl-2 binding protein BAG-1 m NA, comp

gene

A N

I

2.5

0.67 I

2.7

0.82

NC

0

0

U42383

“Mus musculus fibroblast growth factor inducible gene 13

gene

C

N

I

2.3

0.67

I

2.2

0.63

NC

0

0

AA114648

mn04b05.r1 Beddington mouse embryonic region Mus mu

est

C

N

I

*

2.8

0.67

I

*

2.6

0.57

NC

0

0

U28138

“Mus musculus dishevelled-1 proten (DvI1) gene, compe

gene

A

N

I

3.1

0.67

NC

0

0

D

2

0.3

M72394

“Mouse calcium-dependent phosopholipid binding protein (

gene

B

N

I

2.8

0.66

I

3.5

1.13

I

1.2

0.1

AA048304

mj28a07.r1 Soares mouse embryo NbME13.5 14.5 Mus mu

est

A

N

I

3

0.66

I

3.1

0.71

NC

0

0

M73329

“Mouse phospholipase C-alpha (PLC-alpha) mRNA, comple

gene

A

N

I

2

0.66

I

1.8

0.44

NC

0

0

M28723

“Mus musculus housekeeping-tupe protein (MER5) mRNA,

gene

D

N

I

*

3

0.65

I

*

2.4

0.36

MC

1.2

0.1

L36314

“Mus musculus GDP dissociation inhibitor beta mRNA, con

gene

A

N

I

2.1

0.64

I

2.3

0.84

NC

0

0

L27453

“Mus musculus PBX1B mRNA, complete cds”

gene

C

N

I

*

3.4

0.64

I

*

3.2

0.55

NC

0

0

M32486

“Mouse 19.5 mRNA, complete cds”

gene

D

N

I

3.1

0.64

I

2.5

0.39

NC

0

0

U39302

“Mus musculus 26S proteasome subunit 4 ATPase mRNA

gene

C

N

I

2.3

0.63

I

3

1.28

I

1.3

0.1

AA002621

mg55f02.r1 Soares mouse embryo NbME13.5 14.5 Mus mu

est

B

N

I

1.7

0.63

I

1.7

0.62

NC

0

0

M18186

“Mduse 84 kD heatshock protein mRNA, complete cds”

gene

D

N

I

1.7

0.63

I

1.6

0.48

NC

0

0

L22143

“Mouse insulin-like growth factor II/cation independent m

gene

A

N

L

2.7

0.63

I

1.6

0.1

D

1.7

0.2

AA023796

mh65e02.r1 Soares mouse placenta 4NbMP13.5 14.5 Mu

est

B

N

I

2.9

0.62

I

4.2

1.42

MI

1.4

0.1

W33838

mc55c11:rl Soares mouse embryo NbME13.5 14.5 Mus mu

est

D

N

I

*

2.8

0.62

I

*

3.3

0.9

NC

0

0

AA104459

mo55a03.r1 Life Tech mouse embryo 8 5dpc 10664019 Mu

est

C N

I

2.6

0.62

I

2.8

0.78

NC

0

0

J02652

“Mouse malate NADP oxidoreductase mRNA, complete cds”

gene

D

N

I

*

˜3.3

0.62

I

*

˜3.6

0.72

NC

0

0

X60203

M. musculus mRNA for FK506-binding protein

gene

B

N

I

2

0.62

I

2

0.7

NC

0

0

W37000

“mb65311.r1 Soares mouse p3NMF19.5 Mus musculus c[

est

A

N

I

1.7

0.62

I

1.7

0.67

NC

0

0

U43921

“Mus. musculus ubi-d4 mRNA, complete cds”

gene

A

N

I

*

2.6

0.62

I

*

1.8

0.18

NC

0

0

X80478

M. musculus AEBP1 mRNA

gene

B

N

L

1.9

0.62

I

1.3

0.11

D

1.4

0.3

AA059527

mj61f10.r1 Soares mouse embryo NbME13.5 14.5 Mus mus

est

A

N

I

*

˜3.3

0.62

NC

*

0

0

NC

0

0

U11274

“Mus musculus clone pmuAUF1-3 RNA-binding protein AU

gene

A

N

I

*

3.1

0.62

NC

*

0

0

NC

0

0

W96831

mf96h07.r1 Soares mouse embryo NbME13.5 14.5 Mus mi

est

A

N

I

3.1

0.61

I

4.9

1.68

NC

0

0

L20294

“Mus musculus GTP-binding protein (mSara) homologue rr

gene

A N

I

2.4

0.61

I

2.7

0.87

NC

0

0

L21707

“Mus musculus receptor tyrosine kinase (MRK) mRNA, cor

gene

D

N

I

2.3

0.61

I

2.4

0.69

NC

0

0

X92664

M. musculus mRNA for ubiquitin-conjugating enzyme UbcM

gene

B

N

I

*

3.2

0.61

I

*

3

0.52

NC

0

0

X15052

Mouse mRNA for 3′-end of NCAM-140 and NCAM-180 iso

gene

B

N

I

*

2.9

0.61

I

*

2.5

0.43

NC

0

0

W70905

me23c05.r1 Soares mouse embryo NbME13.5 14.5 Mus r

est

D

N

MI

*

3.2

0.61

MI

*

2.7

0.39

NC

0

0

W6489T

md9gb10.r1 Soares mouse embryo NbME13.5 14.5Mus rr

est

A

N

I

2.7

0.61

I

2.2

0.36

NC

0

0

U27455

“Mus muscuilus serine palmitoyltransferase LCB2 subunit r

gene

C

N

I

2.5

0.61

I

2.1

0.34 NC

0

0

AA047939

“mj23e01.r1 Soares mouse embryo NbME13.5 14.5 Mus. r

est

B

N

I

2.8

0.61

I

2.2

0.31

NC

0

0

X53476

Mouse mRNA for non-histone chromosomal protein HMG-1 gene

B

N

I

1.8

0.61

I

2

0.8

NC

0

0

M57999

“Mouse transcription factor NF-kappa-B DNA binding subu

gene

A

N

I

2.6

0.6

I

2.1

0.32

NC

0

0

Y00516

Mouse mRNA for aldolase A

gene

B

N

I

1.5

0.6

I

1.3

0.19

D

1.2

0.2

W74874

est

A

Y

MI

*

˜3.1

0.6

NC

*

0

0

NC

* 0

0

W29420

“mb99a01.r1 Soares mousep3NMF19.5 Mus musculus cD

est

B

N

D

1.5

0.59

D

1.9

1.41

NC

0

0

M26251

“Mouse mRNA encoding vimentin, complete cds”

gene

A

N

I

1.5

0.59

I

1.6

0.85

NC

0

0

X79233

M. musculus EWS mRNA

gene

B

N

I

2.4

0.59

I

2.7

0.79

NC

0

0

L39879

“Mus musculus ferritin L-subunit gene exons 1-4, complet

gene

D

N

I

1.7

0.59

I

1.5

0.31

NC

0

0

AA058163

mj59c08.r1 Soares mouse embryo NbME13.5 14.5.Mus m

est

B

N

D

1.6

0.59

MC

1.3

0.24

NC

0

0

D31717

“Mouse MARib mRNA for ribophorin, complete cds”

gene

C

N

I

1.8

0.59

MI

1.4

0.17

D

1.3

0.2

W41762

mc65g02.r1 Soares mouse embryo NbME13.5 14.5 Mus m

est

D

N

I

*

2.9

0.58

I

*

3.8

1.08

I

1.3

0.1

X80232

M. musculus mRNA for SIG41

gene

C

N

I

2.9

0.58

I

3.7

1.03

MI

1.3

0.1

X75313

M. musculus (C57B/6) GB-like mRNA

gene

B

N

D

1.4

0.57

D

1.4

0.52

NC

0

0

M26270

“Mouse stearoyl-CoA desaturase (SCD2) mRNA, complete

gene

A

N

I

1.8

0.57

NC

0

0

D

2.1

1.4

X53333

Mouse mRNA for triosephosphate isomerase (EC 5.3.1.1)

gene

A

N

I

1.6

0.57

NC

0

0

D

1.7

1

L47480

“Mus musculus BMPA gene, complete

gene

A

N

I

*

˜3.2

0.57

NC

*

0

0

MC

1.4

0.1

X75014

M. musculus Phox2 mRNA for homeodomain protein

gene

C

N

D

˜3.2

0.56

D

˜3.2

0.6

NC

0

0

U58205

Mus musculus Btk locus, alpha-D-galactosidase A (Ags),

gene

C

N

I

*

2.9

0.56

I

*

2.6

0.41

NC

0

0

U31758

“Mus musculus transcriptional regulator RPD3 homdlog mf

gene

C N

I

2.9

0.55

I

6

2.61

I

2.1

0.5

U78103

Mus musculus embryonic ectoderm development protein (

gene

C

N

I

3

0.55

I

3.7

0.85

NC

0

0

AA058163

mj59c08.r1 Soares mouse embryo NbME13.5 14.5 Mus m

est

B

N

D

1.6

0.55

D

1.7

0.84

NC

0

0

W29456

mc03e02.r1 Soares mouse p3NMF19.5 Mus muscuus cDNA

est

D

N

I

*

2.5

0.55

I

*

2.5

0.55

NC

0

0

D21252

“Mouse mRNA for OSF-3, complete cds”

gene

C

N

I

1.6

0.55

I

1.5

0.44

NC

0

0

AA103356

mo18e02.r1 Life Tech mouse embryo 13 5dpc 10666014

est

C

N

I

2.1

0.55

I

1.9

0.42

NC

0

0

U70662

“Mouse epithelial zinc-finger protein EZF (Zie) mRNA,com

gene

A

N

I

2.9

0.55

I

2.5

0.39

NC

0

0

U25708

“Mus musculus CD98 heavy chain mRNA, complete cds”

gene

B

N

I

1.9

0.55

I

1.4

0.15

D

1.3

0.2

D31898

“Mouse mRNA for protein tyrosine phosphatase, PTPBR7”

gene

C

N

MD

2.9

0.55

NC

0

0

NC

0

0

M15668

“Mus musculus X chromosome-linked phosphoglycerate ki

gene

A

N

I

1.6

0.55

NC

0

0

NC

0

0

U35249

Mus musculus CDK-activating kinase assembly factor p3

gene

B

N

I

3.1

0.54

I

4.6

1.32

I

1.5

0.1

AA033153

m137c08.r1 Soares mouse embryo NbME13.5 14.5 Mus mu

est

A

N

I

2.9

0.54

I

2.8

0.53

NC

0

0

U35141

“Mus musculus retinobiastoma-binding protein (mRbAp48)

gene

A

N

I

1.9

0.54

I

1.6

0.29

NC

0

0

W50167

est

A

Y

I

*

˜3.2

0.54

NC

*

0

0

NC

0

0

AA120387

mn46h09.r1 Beddington mouse embryonic region Mus mus

est

A

N

I

*

˜3.2

0.54

NC

*

0

0

MC

1.4

0.1

M64404

Mus domesticus interleukin 1 receptor antagonist (IL-1RA

gene

C

N

I

2.4

0.54

NC

0

0

D

1.6

0.2

U44426

“Mus musculus D52 (mD52) mRNA, complete cds”

gene

C N

I

*

˜3.1

0.53

I

*

˜3.9

0.84

NC

0

0

X54149

“Mouse mRNA for MyD118, a myeloid differentiation prime

gene

B

N

I

2.8

0.53

MI

3.4

0.81

NC

0

0

U26259

“Mus musculus C2-H2 zinc finger protein mRNA, complete

gene

A

N

I

*

3

0.53

I

*

3.1

0.57

NC

0

0

D14340

“Mouse mRNA for ZO-1, complete cds”

gene

D

N

I

*

˜3.0

0.53

I

*

˜3.1

0.56

NC

0 0

M77174

“Mouse periecan mRNA, complete cds”

gene

A

N

I

2.3

0.53

I

1.6

0.15

NC

0

0

M64292

“Mouse T1521 gene, complete cds”

gene

A

N

I

*

2.9

0.52

I

*

3

0.58

NC

0

0

W10377

mb65a02.r1 Soares mouse p3NMF19.5 Mus musculus cD

est

B

N

I

1.9

0.52

I

1.4

0.14

D

1.4

0.2

W65920

“me09e10.r1 Soares mouse embryo NbME13.5 14.5 Mus

est

A

N

I

1.8

0.52

NC

0

0

D

1.7

0.6

X67644

M. musculus gly96 mRNA

gene

B

N

I

2.6/ 0.51

I

4.4

1.78

I

1.7

0.3

Z46757

M. musculus mRNA for high mobiiity group2 pr0tein

gene

B

N

MI

2.4

0.51

I

3.8

1.66

I

1.6

0.2

W98592

mg22g03.r1 Soares mouse embryo NbME13.5 14.5 Mus r

est

B

N

MD

3

0.51

MD>

˜4.0

0.89

NC

0

0

AA023287

mh70h01.r1 Soares mouse placenta 4NbMP13.5 14.5 Mus

est

D

N

I

*

˜3.1

0.51

*

˜4.0

0.88

NC

0

0

M36084

“Mouse dytosolid malate dehydrogenase (cMDHase) gene,

gene

D

N

I

2.2

0.51

I

2.6

0.83

NC

0

0

U43900

“Mus musculus signal transducing adaptor molecule STAM

gene

C

N

I

3.1

0.51

I

3.7

0.77

NC

0

0

D67015

“Mouse mRNA for scg, complete cds”

gene

C

N

I

2.4

0.51

I

2.5

0.62

NC

0

0

W17644

mb76b03.r1 Soares mouse p3NMF19.5 Mus musculus cD

est

D

N

I

1.7

0.51

I

1.6

0.36

NC

0

0

X76653

M. musculus mRNA for ARP-1

gene

C

N

I

*

˜3.0

0.51

I

*

˜2.5

0.34

NC

0

0

L42115

Mus musculus insulin-activated amino acid transporter m

gene

A

N

I

2.3

0.51

I

1.9

0.28

MD

1.2

0

X95351

M. musculus mRNA for pMELK protein

gene

C

N

I

2.9

0.51

I

2

0.18

NC

0

0

L75822

“Mus musculus follistatin-like protein mRNA, complete

gene

B

N

I

1.6

0.51

I

1.3

0.11

D

1.3

0.2

J03236

“Mouse (M. musculus) jun-B mRNA, complete cds”

gene

D

N

I

*

3.1

0.5

I

*

7.7

2.85

I

2.4

0.8

AA048650

mj33b02.r1 Soares mouse embryo NbME13.5 14.5 Mus mu

est

B

N

I

*

˜3.1

0.5

I

*

˜3.8

0.79

NC

0

0

U19891

“Mus musculus putative CCAAT binding factor 1, (mCBF)

gene

C

N

I

*

3

0.5

I

*

3.5. 0.72

NC

0

0

X13586

“Murine mRNA for 2,3-bisphosphoglycerate mutase (BPGN

gene

B

N

I

*

˜3.0

0.5

I

*

˜3.3

0.6

NC

0

0

X55126

M. musculus Zfp-29 gene for zinc finger protein

gene

B

N

D

˜3.0

0.5

D

˜3.0

0.5

NC

0

0

W83187

mf09b08.r1 Soares mouse p3NMF19.5 Mus musculus cDNA

est

B

N

I

2.6

0.5

I

2.3

0.38

NC

0

0

D87903

“Mouse mRNA for ARF6, complete cds”

gene

C

N

I

2

0.49

I

2.2

0.67

NC

0

0

U18797

“Mus musculus MHC class 1 antigen H-2M3 (H-2M3) mRN

gene

D

N

I

*

˜3.0

0.49

I

*

˜3.2

0.56

NC

0

0

AA036265

“mi72g03.r1 Soares mouse embryo NbME.13.5 14.5 Mus mu

est

B

N

MI

2.5

0.49

I

2.3

0.38

NC

0

0

D12907

“Mouse gene for 47-kDa heat shock protein(HSP47), exor

gene

D

N

I

1.6

0.49

I

1.4

0.28

NC

0

0

J04953

“Mouse gelsolin gene, complete cds”

gene

D

N

I

1.8

0.49

NC

0

0

D

1.3

0.2

X01023

Mouse normal c-myc gene and translocated homologue fr

gene

B

N

I

2.5

0.48

I

3.7

1.29

I

1.5

0.1

X65627

M. musculus mRNA TN for p68 RNA helicase

gene B

N

I

2.2

0.48

I

3.2

1.28

I

1.4

0.2

X87817

M. musculus mRNk for Ulip protein

gene

B

N

I

2.2

0.48

I

2.3

0.54

NC

0

0

M65255

“Mouse hydrophiiic protein(KE2 wt) mRNA, complete cds

gene

D N

I

2.4

0.48

I

2.3

0.44

NC

0

0

M19960

“Mouse cAMP-dependent protein kinase alpha subunit gen

gene

A

N

I

2.3

0.48

MI

1.7

0.18

MC

1.3

0.1

W13586

“ma93a02.r1 Soares mouse P3NMF19.5 Mus.musculus cDN

est

D

N

MD

3

0.48

NC

0

0

MI

*

1.4

0

U16216

“Mus musculus uroporphyrinogen III synthase (UROS) mRN

gene

A N

I

2.9

0.48

NC

0

0

NC

0

0

AA139469

mr82e09.r1 Stratagene mouse heart(#937316) Mus musc

est

D

N

I

*

˜3.0

0.47

I

*

˜3.9

0.86

NC

*

0

0

AA118546

mn09c06.r1 Beddington mouse embryonic region Mus mus

est

C

N

I

2

0.47

I

2.4

0.83

NC

0

0

W44201

mc74b05.r1 Soares mouse embryo NbME13.5 14.5 Mus m

est

A

N

I

2.6

0.47

I

*

3

0.7

NC

0

0

AA068057

mm26b03.r1 Stratagene mouse skin (#937313) Mus mus

est

C

N

I

2.3

0.47

I

2.6

0.64

NC

0

0

AA167947

“ms21d05.r1 Stratagene mouse skin (#937313) Mus musc

est

D

N

I

*

˜3.1

0.47

I

*

˜3.4

0.61

NC

0

0

W29669

mc05f11.r1 Soares mouse p3NMF19.5 Mus musculus cDNA

est

D

N

I

*

2.8

0.47

I

*

2.6

0.39

NC

0

0

W14823

mb35d10.r1 Soares mouse p3NMF19.5 Mus musculus cDNA

est

D

N

I

2.5

0.47

I

2.1

0.27

NC

0

0

AA000813

mg35h10.r1 Soares mouse embryo NbME13.5 14.5 Mus mu

est

B

N

I

2.1

0.47

I

1.6

0.14

D

1.4

0.1

AA116282

mq05f12.r1 Soares 2NbMT Mus musculus cDNA clone 5

est

C

N

MI

*

2.7

0.47 NC

*

0

0

NC

*

0

0

W62960

“md86g09.r1 Soares mouse embryo NbME13.5 14.5 Mus r

est

A

N

MI

2.3

0.47

NC

0

0

NC

0

0

M34815

“Mouse monokine induced by gamma interferon (MIG) mR

gene

D

N

I

*

˜2.9

0.46

I

*

˜6.1

2.03

I

2.1

0.5

M32490

“Mouse Cyr61 mRNA, complete cds”

gene

D

N

I

2

0.46

I

3.1

1.74

I

1.6

0.4

AA118739

mp54b08.r1 Soares 2NbMT Mus musculus cDNA clone 5

est

D

N

I

2.4

0.46

I

2.9

0.82 MI

1.2

0.1

U73200

“Mus musculus p116Rip mRNA, complete cds”

gene C

N

I

1.8

0.46

I

1.8

0.53

NC

0

0

X83601

M. musculus PTX3 mRNA

gene

C

N

I

*

2.5

0.46

I

*

2.2

0.32

NC

0

0

AA142800

“mq64e01.r1 Soares 2NbMT Mus musculus cDNA clone 58

est

D

N

I

2.1

0.46

I

1.8

0.28

NC

0

0

D55720

“Mouse mRNA for nuclear pore-targeting complex, comple

gene

A

N

I

2.1

0.46

I

1.7

0.22

MI

1.2

0.1

U14103

“Mus musculus RGL protein mRNA, complete cds”

gene

A

N

I

*

˜2.7

0.46

NC

*

0

0 MI

1.8

0.2

W82881

“mf22b12.r1 Soares mouse embryo NbME13.5 14.5 Mus m

est

B

N

I

2.4

0.46

NC

0

0

D

1.3

0.1

D88793

Mouse mRNA for cystein rich protein-1, complete cds”

gene

C

N

I

1.7

0.45

I

2.2

0.98

I

1.2 0.1

W17549

“mb74a01.r1 Soares mouse p3NMF19.5 Mus musculus c

est

B

N

I

*

2.4

0.45

I

*

2.9

0.72

NC

0

0

U29152

“Mus musculus at dose reductase mRNA, complete cds”

gene

A

N

I

1.9

0.45

I

1.7

0.28

NC

0

0

W15722

mb53b04.r1 Soares mouse p3NMF19.5 Mus musculus cb

est

A

N

I

*

˜2.9

0.45

NC

*

0

0

D

*

˜6.0

3.2

U48363

“Mus musculus transcription at activator alpha-NAC (Naca)

gene

B

N

I

1.7

0.44

I

1.9

0.72

NC

0

0

W77613

me68d10.r1 Soares mouse embryo NbME13.5 14.5 Mus r

est

D

N

I

2.4

0.44

I

2.5

0.49

NC

0

0

M29464

“Mouse platetet-derived growth factor A chain (PDGFA) m

gene

A

N

I

2.4

0.44

I

2.5

0.48

NC

0

0

AA087332

mn95e11.r1 Stratagene mouse lung 937302 Mus muscull

est

C

N

D

2.6

0.44

D

2.5

0.42

NC

0

0

W33440

mc15d01.r1 Soares mouse p3NMF19.5 Mus musculus cbN

est

C

N

I

1.9

0.44

I

1.6

0.23

NC

0

0

W33721

mc54h12.r1 Soares mouse embryo NbME13.5 14.5 Mus m

est

D

N

I

1.5

0.44

I

1.3

0.16

NC

0

0

L31398

“Mus musculus dynamin (UDnm) mRNA, complete cds”

gene

A

N

I

*

2.2

0.44

NC

*

0

0

NC

0

0

U27462

“Mus musculus BS4 peptide RNA, complete cds”

gene

A

N

I

*

˜2.9

0.44

NC

*

0

0

MI

1.9

0.2

U28789

“Mus musculus p53-associated cellular protein PACT mRN

gene

C

N

I

*

2.9

0.44

NC

*

0

0

NC

0

0

U43085

“Mus musculus glucocorticoid-attenuated response

gerie

gene

C

N

I

*

˜2.6

0.43

I

*

˜12.4

5.75

I

4.7

2.7

AA039109

“mi99d11.r1 Soares mouse embryo NbME13.5 14.5 Mus m

est

D

N

I

2.1

0.43

I

2.9

1.1

I

1.4

0.2

U22015

“Mus musculus retinoid X receptor interacting protein (RIF

gene

A

N

I

*

˜2.7

0.43

I

*

˜3.3

0.68

NC

0

0

AA039104

mi99c09.r1 Soares mouse embryo NbME13.5 14.5 Mus mI

est

B

N

I

*

˜3.0

0.43

I

*

˜3.2

0.54

NC

0

0

AA119078

“mp65d05.r1 Soares 2NbMT Mus musculus cDNA clone 5

est

B

N

I

*

2.5

0.43

I

2.4

0.42

NC

0

0

U20636

“Mus musculus cyclin F mRNA, alternatively spliced form,

gene

A

N

I

*

˜2.8

0.43

NC

*

0

0

MI

3.1

0.7

W33415

mc52c10.r1 Soares mouse embryo NbME13.5 14.5 Mus m

est

D

N

I

2.7

0.43

NC

0

0

D

1.6

0.2

AA161979

ms25g12.r1 Stratagene mouse skin (#937313) Mus muscu

est

C

N

I

*

˜2.7

0.42

I

*

˜5.3

1.63

NC

0

0

U42386

“Mus musculus fibroblast growth factor inducible gene 14

gene

C

N

I

*

2.9

0.42 t

4.8

..1.3 I

. 1.7 0.2

D00925

Mouse mRNA for transcription factor S-II-related protein

gene

D

N

I

*

˜2.9

0.42

I

*

˜3.9

0.84

NC

0

0

AA162093

mn45d08.r1 Beddington mouse embryonic region Mus mu

est

C

N

I

*

2.9

0.42

I

*

3.6

0.72

NC

0

0

U21960

“Mus musculus calcium modulating cyclophilin ligand (CA

gene

B

N

I

*

2.5

0.42

I

*

3

0.67

NC

0

0

Z31554

M. musculus (129/Sv) Cctd mRNA for CCT (chaperonin co

gene

D

N

I

1.8

0.42

I

2

0.58

NC

0

0

L31958

“Mus musculus (clone pMAT1) mRNA, complete cds”

gene

A N

I

2

0.42

I

2

0.38

NC

0

0

D38077

“Mouse gene for APEX nuclease, complete cds”

gene

D

N

I

2.1

0.42

I

2

0.36

NC

0

0

X12507

Mouse eIF-4All mRNA for protein synthesis initiation facto

gene

B

N

I

2.1

0.42

I

1.8

0.25

NC

0

0

AA108822

mp39h01.r1 Barstead MPLRB1 Mus musculus cDNA clone 5

est

A

N

I

2.2

0.42

I

1.1

0.01

D

1.9

0.4

AA107471

m196g10.r1 Stratagene mouse kidney (#937315) Mus musc

est

B

N

I

*

˜2.8

0.42

NC

*

0

0

NC

0

0

X52102

M. musculus p16K gene for 16 kDa protein

gene

B

N

I

2.4

0.42

NC

0

0

NC

0

0

D78641

“Mouse mRNA for membrane glycoprotein, complete cds”gene

C

N

I

2.3

0.42

NC

0

0

NC

0

0

M16465

“Mouse calpactin I light chain (p11) mRNA, complete cds”

gene

D

N

MD

1.6

0.42

NC

0

0

NC

0

0

M63725

“Mouse binding protein for T-cell receptor (TCR-ATF1) mF

gene

A

N

I

*

˜2.9

0.41

I

*

˜3.1

0.48

NC

0

0

U43512

“Mus musculus dystroglycan (Dag1) mRNA, partial cds”

gene

C

N

I

2.1

0.41

I

1.6

0.13

NC

0

0

M34476

“Mouse retinoic acid receptor gamma (mRAR-gamma-A) n

gene

A

N

I

*

˜2.9

0.42

NC

0

0

NC

0

0

1.1

0

AA051486

mg55d01.r1 Soares mouse embryo NbME 13.5 14.5 Mus mu

est

B

N

I

1.9

0.4

I

2.6

1.09

I

1.4

0.2

L16846

“Mouse BTG1 mRNA, complete cds”

gene

D

N

I

2.6

0.4

I

3.1

0.67

NC

0

0

AA089187

mi85h02.r1 Stratagene mouse kidney (#937315) Mus mu

est

A

N

I

2.4

0.4

I

2.5

0.46

NC

0

0

W70629

me19c04.r1 Soares mouse embryo NbME13.5 14.5 Mus mu

est

A

N

I

*

˜2.8

0.4

I

*

˜3.0

0.46

NC

0

0

U29396

“Mus musculus annexin V (Anx5) mRNA, complete cds”

gene

A

N

I

1.7

0.4

I

1.6

0.31

NC

0

0

AA117064

mn29e08.r1 Beddington mouse embryonic region Mus mus

est

C

N

I

2.7

0.4

I

2

0.16

D

1.4

0.1

L08757

“Mus musculus homeobox protein (Hoxa10) mRNA, comp

gene

A

N

I

2.3

0.4

I

1.7

0.14

D

1.4

0.1

M25244

“Mouse pre-B cell P2B/LAMP-1 mRNA,complete cds”

gene

D

N

I

1.6

0.4

I

1.3

0.13

NC

0

0

L18880

“Mouse vinculin mRNA, complete cds”

gene

A

N

I

*

˜2.8

0.4

I

*

˜1.8

0.12

D

1.5

0.1

X53824

Mouse X16 mRNA

gene

B N

I

2.2

0.4

NC

0

0

NC

0

0

M87539

“Mouse cellular retinoic acid binding protein type II (CRAB

gene

D

N

I

*

˜2.6

0.4

NC

*

0

0

D

˜7.1

2.8

M23384

“Mouse glucose transporter 1 mRNA, complete cds”

gene D

N

I

1.9

0.4

NC

0

0

D

1.7

0.5

M57999

“Mouse transcription factor NF-kappa-B DNA binding subu

gene

A

N

I

2.7

0.39

I

3.1

0.57

NC

0

0

AA072252

“mm69d07.r1 Stratagene mouse macrophage (#937306) M

est

C

N

I

2.5

0.39

I

2

0.19

NC

0

0

AA027667

“mi09f07.r1 Soares mouse p3NMF19.5 Mus musculus cDNA

est

B

N

I

*

2.9

0.39

NC

*

0

0

NC

0

0

U08020

“Mus musculus FVB/N collagen pro-alpha-1 type 1 chain m

gene

A

N

I

1.4

0.39

NC

0

0

D

1.2

0.3

M84324

“Mus musculus type IV collagenase mRNA, complete cds”

gene

D

N

I

1.9

0.39

NC

0

0

D

1.6

0.4

U70210

“Mus musculus TR2L mRNA, complete cds”

gene

C

N

MI

2.5

0.38

MI

2.7

0.47

NC

0

0

U08110

Mus musculus RNA1 homolog (Fug1) mRNA, complete cd

gene

B

N

I

*

2.2

0.38

I

*

2.3

0.42

NC

0

0

AA144601

mr68g02.r1 Stratagene mouse testis (#937308) Mus muscu

est

D

N

I

*

2.5

0.38

I

*

2.6

0.4

NC

0

0

AA050551

mj20e07.r1 Soares mouse embryo NbME13.5 14.5 Mus mu

est

D

N

I

*

˜2.7

0.38

I

*

˜2.6

0.34

NC

0

0

AA020620

mh63a06.r1 Soares mouse placenta 4NbMR13.5 14.5 Mus m

est

B

N

I

*

˜2.8

0.38

I

*

˜2.5

0.28

NC

0

0

AA155371

mn43f12.r1 Beddington mouse embryonic region Mus mu

est

A

N

I

*

2.5

0.38

I

*

1.6

0.08

D

1.5

0.1

Z72000

M. musculus BTG3 mRNA

gene

B

N

I

1.9

0.37

I

2.7

1.05

I

1.4

0.2

X52875

Mouse homeobox gene S8 mRNA

gene

B

N

MI

2.2

0.37

I

2.8

0.76

MI

1.3

0.1

AA145181

“ms04d10.r1 Stratagene mouse skin (#937313) Mus musc

est

D

N

I

*

2.6

0.37

I

*

3.3

0.68

NC

0

0

W85250

mf49e09.r1 Soares mouse embryo NbME13.5 14.5 Mus mu

est

D

N

I

*

˜2.8

0.37

I

*

˜3.3

0.55

NC

0

0

X51829

Mouse myeloid differentiation primary response mRNA en

gene

B

N I

*

2.5

0.37

I

*

2.7

0.44

NC

0

0

D28492

“Mouse mRNA for Nedd2 protein, complete cds”

gene

A

N

I

*

2.6

0.37

I

*

2.6

0.37

NC

0

0

AA008737

mg98e04.r1 Soares mouse embryo NbME13.5 14.5 Mus r

est

B

N

I *

˜2.7

0.37

I

*

˜2.2

0.21

NC

0

0

W82026

me96a05.r1 Soares mouse embryo NbME13.5 14.5 Mus mu

est

A

N

I

1.9

0.37

MI

1.5

0.16

D

1.2

0.1

W97055

“mg07h12.r1 Soares mouse embryo NbME13.5 14.5 Mus

est

A

N

I

2

0.37

NC

0

0

D

2.5

0.9

UD6119

“Mus musculus cathepsin H prepropeptide (ctsH) mRNA,

gene

A

N

MI

2.6

0.37

NC

*

0

0

NC

0

0

X69657

M. musculus (clone W13) WRS mRNA for tryptophan--tRN/

gene

B

N

I

*

2.2

0.37

0

0

D

1.6

0.2

AA163305

mr92g12.r1 Stratagene mouse embryonic carcinoma (#937

est

B

N

I

*

2.6

0.36

I

*

3.7

0.9

NC

0

0

XD1756

Mouse cytochrome c gene (MC1)

gene

B

N

I

2

0.36

I

2.6

0.88

I

1.3

0.1

AA051500

mL53d10.r1 Soares mouse embryo NbME13.5 14.5 Mus m

est

C

N

I

1.8

0.36

I

2

0.56

NC

0

0

U55861

“Mus musculus RNA binding protein TIAR mRNA, complet

gene

C

N

I

2.2

0.36

MI

2.3

0.42

NC

0

0

U66620

“Mus musculus SWI/SNF complex 60 kDa subunit (BAF60

gene

A

N

I

*

˜2.7

0.36

I

*

˜2.6

0.3

NC

0

0

W13502

ma85a03.r1 Soares mouse p3NMF19.5 Mus musculus cDN

est

D

N

D

1.5

0.36

D

1.4

0.24

NC

0

0

X64837

M. musculus Oat mRNA for ornithine aminotransferase

gene

B

N

I

1.9

0.36

I

1.7

0.22

D

1.1

0

D16141

“Mouse mgl-1 mRNA for CRF, complete cds”

gene

B

N

I

2

0.36

I

1.6

0.14

NC

0

0

M57891

“Mouse complement component C2 mRNA, complete cds”

gene

D

N

I

*

˜2.4

0.36

I

*

˜1.6

0.1

NC

0

0

M12600

“Mouse androgen regulated gene RP2, complete cds, with

gene

A

N

I

2.6

0.36

NC

0

0

NC

0

0

M34141

“Mouse prostaglandin endoperoxide (PGG/H) mRNA, comp

gene

A

N

I

2.2

0.35

I

2.8

0.73

NC

0

0

U10119

“Mus musculus SKD1 protein mRNA, complete cds”

gene

A

N

I

*

˜2.6

0.35

I

*

˜2.9

0.45

NC

0

0

D50367

“House mouse; Musculus domesticus mRNA for KAP3B, c

gene

C

N

I

˜2.7

0.35

I

*

˜3.0

0.44

NC

0

0

AA061989

mj83a01.r1 Soares mouse p3NMF19.5 Mus musculus cDN

est

C

N

MD

2.7

0.35

D

*

˜2.9

0.4

NC

0

0

W30116

“mc26h02.r1 Soares mouse p3NMF19.5 Mus musculus cDN

est

D

N

I

2.1

0.35

I

2.2

0.39

NC

0

0

U43076

“Mus musculus cdc37 homolog mRNA, complete cds”

gene

C

N

I

1.6

0.35 I

1.6

0.35

NC

0

0

W11011

ma47a11.r1 Soares mouse p3NMF19.5 Mus musculus ,cD

est

C

N

I

*

2.1

0.35

MI

*

2.1

0.34

NC

0

0

M12379

Mouse Thy-1.2 glycoprotein gene, complete cds”

gene

A

N

I

1.6

0.35

I

1.6

0.33

NC

0

0

L37092

“Mus musculus cyclin-dependent kinase homologue (p130

gene

A

N

I

*

2.4

0.35

I

*

2.2

0.28

NC

0

0

X7D887

M. musculus mRNA for p59 immunophiliin

gene

A

N

I

1.7

0.35

MI

1.4

0.11

D

1.3

0.1

W08392

“mb43c10.r1 Soares mouse p3NMF19.5 Mus musculus cD

est

C

N

I

1.7

0.35

I

1.3

0.1

D

1.3

0.1

AAD31158

mi47c11.r1 Soares mouse embryd NbME13.5 14.5 Mus m

est

B

N

I

1.6

0.34 I

2

0.82

I

1.2

0.1

D13695

“Mouse mRNA for ST2L protein, complete cds”

gene

D

N

I

*

˜2.6 0.34 I

*

˜3.4

0.67

I

1.3

0.1

AA166088

ms24c05.r1 Stratagene mouse skin (#937313) Mus muscu

est

D

N

I

2.5

0.34

I

3.1

0.58

NC

0

0

AA168959

“mr31d03.r1 Soares mouse 3NbMS Mus musculus cDNA clo

est

C

N

I

*

2.6

0.34

I

*

3.2

0.56

NC

0

0

Z67745

“M. musculus mRNA for phosphatase 2A catalytic subunit,

gene

B

N

I

1.9

0.34

I

2.2

0.54

NC

0

0

L33726

“Mouse fascin mRNA, complete cds”

gene

D

N

I

1.8

0.34

I

1.9

0.43

NC

0

0

M96163

“Mus musculus (clone 2) serum inducible kinase (SNK) ,mF

gene

A

N

I

2

0.34

MI

1.9

0.29

NC

0

0

AA050852

mj20d12.r1 Soares mouse embryo NbME13.5 14.5 Mus m

est

A

N

I

1.7

0.34

I

1.6

0.23

NC

0

0

M33760

“Mouse FGF receptor mRNA, complete cds”

gene

D

N

I

2

0.34

I

1.8

0.23

NC

0

0

X07997

Mouse mRNA for cytotoxic T-cell membrane glycoprotein

gene

D

N

I

2

0.34

I

1.5

0.1

D

1.3

0.1

J04036

“Mus musculus (clone p70ZN8) band 3-related protein mF

gene

A

N

I

2

0.34

NC

0

0

NC

0

0

X67083

M. musculus chop-10 mRNA

gene

B

N

I

1.8

0.34

NC

0

0

D

2

0.6

AA153519

ms61g12.r1 Stratagene mouse embryonic carcinoma (#93

est

A

N

I

2.4

0.33

I

4.1

1.26

NC

0

0

X79003

M. musculus mRNA for integrin alpha 5 subunit

gene

B

N

I

1.9

0.33

I

2.3

0.62

NC

0

0

M76727

“Mouse pyruvate dehydrogenase (pdha-1) mRNA, comple

gene

A

N

I

2.1

0.33

I

2.2

0.43

NC

0

0

Z26580

M.musculus mRNA for cyclin A

gene

B

N

MI

2.3

0.33

I

2.3

0.35

NC

0

0

X84692

M. musculus 5pnr mRNA for RNA binding protein

gene

C

N

D

˜2.6

0.33

D

˜2.6

0.33

NC

*

0

0

Z37164

“M. musculus Cctq mRNA encoding cytosolic chaperone c

gene

B

N

I

1.8

0.33

I

1.8

0.32

NC

0

0

M84607

“Mus musculus PDGF-alpha-receptor (PDGF-alpha-R) mRN

gene

D

N

I

*

2.4

0.33

I

*

2.3

0.26

NC

0

0

U76832

“Mus musculus plasma membrane protein syntaxin-4 mRN

gene

C

N

I

2.1

0.33

I

1.9

0.23

NC

0

0

D10475

Mouse mRNA for epimorphin

gene

A

N

I

2.1

0.33

I

1.8

0.2

NC

0

0

M18194

Mouse fibronectin (FN) mRNA

gene

D

N

I

1.5

0.33 I

1.3

0.1

NC

0

0

W41501

mc43d41.r1 Soares mousse p3NMF19.5 Mus musculus cD

est

A

N

I

1.9

0.33

NC

0

0

D

1.3

0.1

D29016

Mouse mRNA for squalene synthase

gene

A

N

I

1.7

0.33

NC

0

0

D

2.2

1.1

W13425

mb33h06.r1 Soares mouse p3NMF19.5 Mus musculus cDNA

est

D

N

I

1.9

0.33

NC

0

0

D

1.7

0.4

X96639

M. musculus mRNA for protein responsible for hereditary n

gene

B N

I

1.9

0.32

I

2.6

0.93

I

1.4

0.2

U49112

“Mus musculus calcium-binding protein ALG-2 (ALG-257) gene

B

N

I

2

0.32

I

2.1

0.42

NC

0

0

Z46663

M. musculus DNA for growth hormone gene and promoter

gene

D

N

MI

*

2.3

0.32

MI

*

2.5

0.38

NC

*

0

0

D76446

“Mouse mRNA for TAK1 (TGF-beta-activated kinase), corr

gene

C

N

I

*

˜2.5

0.32

I

*

˜2.4

0.29

NC

0

0

W11954

“ma79e11.r1 Soares mouse p3NMF19.5 Mus musculus cDN

est

D

N

I

*

2.5

0.32

I

*

2

0.17

NC

0

0

AA154451

mq47f04.r1 Soares 2NbMT Mus musculus cDNA clone 58

est

B

N

I

*

2.4

0.32

I

*

1.9

0.16

NC

0

0

W63876

md64b01.r1 Soares mouse embryo NbME13.5 14.5 Mus m

est

A

N

I

2.2

0.32

NC

0

0

MC

1.7

0.2

U22394

“Mus musculus mSin3A (sin3A) mRNA, complete cds”

gene

A

N

I

*

2.5

0.32

NC

*

0

0

NC

0

0

AA003458

“mg58h04.r1 Soares mouse embryo NbME13.5 14.5 Mus mu

est

B

N

I

2

0.32

NC

0

0

NC

0

0

U51112

“Mus musculus Na+/H+ exchanger (NHE-1) mRNA, compl

gene

B

N

I

2.2

0.32

NC

0

0

NC

0

0

U38196

“Mus musculus palmytoylated protein p55 mRNA, comple

gene

C

N

I

2.3

0.32

NC

0

0

NC

0

0

W20990

mb89f11.r1 Soares mouse p3NMF19.5 Mus musculus cD

est

D

N

I

2.2

0.32

NC

0

0

NC

0

0

W41899

mc64g01.r1 Soares mouse embryo NbME13.5 14.5 Mus mu

est

D

N

D

1.8

0.32

NC

0

0

NC

0

0

X72910

M. musculus Cd24a gene

gene

D

N

I

2.2

0.31

I

3.8

1.35

I

1.7

0.4

U13262

“Mus musculus myelin gene expression factor (MEF-2) mF

gene

A

N

I

*

˜2.4

0.31

I

*

˜3.2

0.59

NC

0

0

AA152884

mr14e04.r1 Soares mouse 3NbMS Mus musculus cDNA cl

est

D

N

I

2.3

0.31

I

2.7

0.51

I

1.2

0

D14636

“Mouse mRNA for PEBP2a1 protein, complete cds”

gene

B

N

I

*

˜2.5

0.31

I

*

˜3.0

0.5

NC

0

0

U52945

“Mus musculus tumor susceptibility protein TSG101 (tsg1

gene

B

N

I

1.9

0.31

I

1.9

0.43

NC

0

0

X14926

Mouse mRNA for calreticulin

gene

D

N

I

1.9

0.31

I

1.9

0.37

NC

0

0

AA067362

mm39b05.r1 Stratagene mouse melanoma (#937312) MU

est

A

N

I

*

2.2

0.31

I

*

2.2

0.34

NC

0

0

D88315

“Mouse mRNA for tetracycline transporter-like protein, co

gene

C

N

I

2.5

0.31

I

2.4

0.25

NC

0

0

L07037

“Mus musculus (clone E31.1 in pGEM7ZI(+)) N-acetylgluc

gene

D

N

I

2.1

0.31

I

1.7

0.14

NC

0

0

M62766

“Mouse HMG-CoA reductase mRNA1 3′ end”

gene

D

N

I

*

2.4

0.31

I

*

1.5

0.06

NC

0

0

X13135

Murine mRNA fragment for fatty acid synthase (EC 2.3.1

gene

B

N

I

1.8

0.31

NC

0

0

D

1.9

0.5

U08378

“Mus musculus acute phase response factor (APRF) mRN

gene

C

N

I

1.8

0.31

NC

0

0

NC

*

0

0

J03928

“Mouse CD1 phosphofructokinase (PFK) mRNA, complete

gene

C

N

I

1.6

0.31

NC

0

0

D

2.2

1.1

W84260

mf45b08.r1 Soares mouse embryo NbME13.5 14.5 Mus m

est

A

N

MI

*

˜2.5

0.3

I

*

˜3.9

0.87

NC

*

0

0

W51433

est

A

Y

I

*

2.3

0.3

I

*

3.4

0.85

NC

0

0

X66091

M. musculus ASF mRNA

gene

B

N

I

*

˜2.5

0.3

I

3.8

0.81

NC

0

0

L36611

“Mus musculus protein synthesis initiation factor 4A (elf-4

gene

A

N

MI

1.5

0.3

I

1.8

0.62

NC

0

0

AA032948

m124a02.r1 Soares mouse embryo NbME13.5 14.5 Mus m

est

B

N

I

2

0.3

I

2.6

0.62

NC

0

0

U69270

Mus musculus nuclear LiM interactor (NLI) mRNA, compl

(gene

C

N

MI

2.1

0.3

I

2.6

0.59

NC

0

0

AA097292

“mk16h08.r1 Soares mouse p3NMF19.5 Mus musculus c

est

C

N

D

1.5

0.3

D

1.7

0.46

NC

0

0

AA111494

mo51c06.r1 Life Tech mouse embryo 10 5dpc 10665016 M

est

C

N

I

*

2.5

0.3

I

*

2.5

0.31

NC

0

0

AA030635

“mi11hp9.r1 Soares mouse p3NMF19.5 Mus musculus cDN

est

B

N

D

*

˜2.3

0.3

D

*

˜2.3

0.26

NC

0

0

U16741

“Mus musculus capping protein alpha 2 subunit mRNA. c

gene

A

N

I

2.1

0.3

I

2

0.23

NC

0

0

U25844

“Mus musculus serine proteinase inhibitor (SP1I) mRNA, c

gene

A

N

I

1.7

0.3

NC

0

0

NC

0

0

W35058

mc35g06.r1 Soares mouse p3NMF19.5 Mus musculus cD

est

B

N

I

1.7

0.3

NC

0

0

D

1.8

0.5

X99572

M. musculus mRNA for new member of PDGF/VEGT family

gene

C

N

I

2.1

0.3 NC

0

0

NC

0

0

Y00309

Mouse LDH-A gene for lactate dehydrogenease-A

gene

C

N

I

1.3

0.3

NC

0

0

D

1.3

0.4

AA008095

my71h12.r1 Soares mouse embryo bME13.5 14.5 Mus

est

D

N

I

*

˜2.6

0.3

NC

*

0

0

NC

0

0

J04115

“Mouse c-jun protein oncogene mRNA, complete cds”

gene

D

N

I

*

˜2.3

0.29

I

*

˜6.0

2.04

I

2.6

0.8

U19854

“Mus musculus ubiquitinating enzyme E2-20K mRNA ,com

gene

B

N

I

*

˜2.3

0.29

I

*

˜4.2

1.07

NC

0

0

X66976

“M. musculus coI8a1 gene, exon 1 (and joined CDS)”

gene

C

N

I

*

2.5

0.29

I

*

3.1

0.55

NC

0

0

D64160

“Mouse clone Rae-107 mRNA for cell surface protein, com

gene

B

N

I

*

2.5

0.29

I

*

2.4 0.28

NC

0

0

M59378

“Murine tumor necrosis factor 1 receptor (TNFR-1) mRNA,

gene

D

N

I

*

2.4

0.29

I

*

2.1

0.2

NC

0

0

D84096

“Mouse mRNA for ubiquitin carboxyl-terminal hydrolase (

gene

B

N

I

*

2.2

0.29

I

*

1.9

0.18

NC

0

0

AA003990

mg89c04.r1 Soares mouse embryo NbME13.5 14.5 Mus r

est

A

N

I

2.1

0.29

I

1.7

0.15

NC

0

0

AA170444

ms90t10.r1 Soares mouse 3NbMS Mus musculus cDNA clone

est

D

N

I

*

2.1

0.29

I

*

1.5

0.09

NC

0

0

U03715

“Mus musculus alpha-1 (XVIII) collagen (COL18A1) gene,

gene

B

N

I

*

2.1

0.29

MI

*

1.5

0.08

NC

0

0

X17502

Mouse mRNA overexpressed and amplified in teratocarcino

gene

B

N

I

1.6

0.29

MI

1.2

0.06

D

1.3

0.1

W54584

md01d12.r1 Soares mouse embryo NbME13.5 14.5 Mus r

est

A

N

I

2.1

0.29

NC

0

0

MC

1.2

0

L31783

“Mus musculus uridine kinase mRNA, partial cds”

gene

A

N

I

*

˜2.6

0.29

NC

0

0

NC

0

0

W65178

md78h05.r1 Soares mouse embryo NbME13.5 14.5 Mus m

est

A

N

I

2.1

0.29

NC

0

0

D

1.5

0.1

U24674

“Mus musculus Max interacting protein 1 alternatively spli

gene

A

N

I

*

2.5

0.29

NC

*

0

0

NC

0

0

X62701

M. musculus muPAR2 mRNA

gene

A

N

I

*

2.1

0.28

I

*

4.9

2.18

I

2.3

0.7

W82115

me98c09.r1 Soares mouse p3NMF19.5 Mus musculus cDN

est

A

N

I

*

2.1

0.28

I

*

3

0.75

NC

0

0

AA105763

m184e01.r1 Stratagene mouse kidney (#937315) Mus musc

est

D

N

I

*

˜2.5

0.28

I

*

˜3.5

0.64

NC

0

0

W53188

md19a08.r1 Soares mouse embryo NbME13.5 14.5 Mus m

est

D

N

I

2

0.28

I

2.4

0.53

NC

0

0

X70298

M. musculus sox-4 mRNA

gene

C

N

MI

2.1

0.28

I

2.5

0.49

NC

0

U74359

“Mus musculus mothers-against-dpp-related-1 mRNA, cor

gene

C

N

I

*

˜2.4

0.28

I

*

˜2.9

0.43

NC

0

0

X61576

M. musculus mRNA for connexin 43

gene

D

N

I

*

˜2.5

0.28

I

*

˜2.7

0.34

NC

0

W85566

“mf49e05.r1 Soares mouse embryo NbME13.5 14.5 Mus m

est

A

N

D

*

˜2.3

0.28

D

*

˜2.3

0.29

NC

0

0

AA060704

j63b03.r1 Soares mouse p3NMF19.5 Mus musculus cDN

est

B

N

D

1.7

0.28

D

1.7

0.29

NC

0

0

X61506

Mouse E46 mRNA for E46 protein

gene

C

N

I

1.7

0.28

I

1.7

0.29

NC

0

0

W18308

“mb68h11.r1 Soares mouse p3NMF19.5 Mus musculus c

est

D

N

I

1.4

0.28

I

1.4

0.25

NC

0

0

U77040

“Mus musculus LIM protein 3 (mSLiM3) mRNA, complete

gene

C

N

I

1.8

0.28

I

1.6

0.2

NC

0

0

L19932

“Mouse (beta ig-h3) mRNA, complete cds”

gene

C

N

I

2

0.28

I

1.8

0.2

NC

0

0

L10106

“Mus-musculus protein tyrosine phosphate mRNA, comple

gene

A

N

I

˜2.5

0.28

I

*

2.0

0.16

NC

0

0

W15789

mb51a07.r1 Soares mouse p3NMF1.9.5 Mus musculus cD

est

D

N

I

1.8

0.28

I

1.6

0.16

NC

0

0

X14805

Mouse mRNA encoding DNA (cytosine-5)-methyltransfera

gene

C

N

I

2.2

0.28

I

1.8

0.15

NC

0

0

M13444

“Mouse alpha-tubulin isotype M-alpha-4 mRNA, complete

gene

A

N

I

2

0.28 I

1.6

0.13

NC

0

0

Z14986

M. musculus mRNA encoding adenosylmethionine decarbox

gene

A

N

I

2.3

0.28

NC

0

0

D

1.3

o:I

D16262

“Mouse mRNA encoding unknown protein, complete cds”

gene

A

N

I

2.1

0.28 NC

0

0

NC

0

0

U02887

“Mus musculus DNA repair protein (XRCC1) mRNA, compl

gene

B

N

I

2.1

0.28

NC

0

0

NC

0

0

X04367

Mouse pre-PDGF receptor mRNA (PDGF = platelet-derivec

gene

B

N

I

1.9

0.28

NC

0

0 D

1.9 0.4

U63337

“Mus musculus cyclin-dependent kinase-2 alpha (Cdk2-alp

gene

C

N

I

2.2

0.28

NC

0

0

NC

0

0

U69695

“Mus musculus hyaluronan synthase homolog mRNA, comp

gen

C

N

I

*

˜2.4

0.2

7 I

*

˜7.4

2.7

I

3.1

1

W30651

mc14e08.r1 Soares mouse 3NMF19.5 Mus musculus cDN

est

D

N

I

*

2.3

0.27

I

*

3.9

0.98

I

1.7

0.2

AA003554

mg61d10.r1 Soares mouse embryo NbME.13.5 14.5 Mus m

est

B

N

I

1.7

0.2

7 I

2.2

0.59

I

1.2

0.1

U17961

“Mus musculus p62 mRNA, complete cds”

gene

A

N

I

*

2.3

0.27

I

*

2.8

0.48

NC

0

0

AA068582

mm45f05.r1 Stratagene mouse melanoma (#937312) Mus

est

C

N

I

2.3

0.27

I

2.7

0.44

NC

0

0

M32010

“Mouse MHC H˜2K/t-W5-linked open reading frame mRNA

gene

D

N

I

1.8

0.27

I

2

0.41

NC

0

0

X15267

“Mouse mRNA for acidic ribosomal phosophoprotein PO

gene

B

N

D

1.2

0.27

D

1.3

0.37

NC

0

0

AA003841

mg78n06.r1 Soares mouse embryo NbME13.“5, 14.5 Mus

est

B

N

I

*

2.1

0.27

I

*

2.3

0.33

NC

0

0

M15501

“Mouse alpha-cardiac actin mRNA, 3′ end”

gene

D

N

I

2.1

0.27

I

1.9

0.2

NC

0

0

W13498

ma84h06.r1 Soares mouse P3NMF19.5 Mus musculus cD

est

D

N

I

2.4

0.27

I

2.1

0.17

NC

0

0

U37485

“Mus musculus CDE1-binding protein CDEBP (Cdebp) gen

gene

C

N

I

1.8

0.27

I

1.5

0.12

D

1.2

0.1

W51315

est

A

Y

I

*

2.3

0.27

NC

*

0

0

NC

0

0

L25885

“Mouse beta 1,4N-acetylgalactosaminyltransferase mRNA

gen

A

N

I

2.5

0.27

NC

0

0

NC

0

0

X94616

M. muscuus RNA for glycogen synthase

gene

B N

I

1.8

0.27

NC

0

0

D

2

0.5

X62940

M. musculus TSC-22 mRNA

gene

B

N

I

1.6

0.27

NC

0

0

NC

0

0

X60831

Mousse ubf gene for transcription factor UBF

gene

B

N

I

*

2.4

0.27

NC

*

0

0

NC

0

0

X53929

M. musculus mRNA for PGII (decorin)

gene

B

N

I

*

2.2

0.27

NC

*

0

0

D

·9.5

4

X67469

M. musculus mRNA for AM2 receptor

gene

C

N

I

1.7

0.27

NC

0

0

D

2.4

1.1

U73744

“Mus musculus heat shock 70 protein (Hsc70) gene, com

gene

D

N

I

1.4

0.27

NC

0

0

NC

0

0

D12618

“Mouse mRNA for nucleosome assembiy protein-1, compl

gene

C

N

I

1.7

0.26

I

2.8

1.26

I

1.6

0.4

Z31557

M. musculus (129/Sv) Cctz mRNA for CCT (chaperonin co

gene

B

N

I

1.7

0.26

I

2.2

0.76

I

1.3

0.2

AA003093

mg51a08.r1 Soares mouse embryo NbME13.5 14.5 Mus m

est

B

N

I

2

0.26

I

2.4

0.5

I

1.2

0

D49429

“Mouse NCBP-29 mRNA for PW29, complete cds”

gene

B

N

I

2

0.26

MI

2.5

0.49

NC

0

0

J04620

Mouse primase p49 subunit (priA) mRNA, complete cds”

gene

A

N

I

*

2.4

0.26

I

*

2.9

0.46

NC

0

0

W78338

me84b10.r1 Soares mouse embryo NbME13.5 14.5 Mus mu

est

A

N

MI

1.6

0.26

MI

1.8

0.46

NC

0

0

W13878

mb36.h02.r1 Soares mouse p3NMF19.5 Mus. musculus cD

est

D

N

I

1.8

0.26

I

2.1

0.45

NC

0

0

X04017

Mouse mRNA for cysteine-rich glycoprotein SPARC

gene

A

N

I

1.3

0.26

I

1.4

0.39

NC

0

0

M63848

“Mouse leukotriene A-4 hydrolase mRNA, complete cds”

gene

D

N

I

1.8

0.26

I

1.9

0.26

NC

0

0

AA120716

mp72h12.r1 Soares 2NbMT Mus musculus cDNA clone 574

est

C

N

I

2.1

0.26

I

2.1

0.24

NC

0

0

AA109714

mp49e12.r1. Barstead MPLRB1 Mus musculus cDNA clone

est

D

N

I

1.9

0.26

I

1.8

0.22

NC

0

0

X70067

M. musculus RNPS1.mRNA for RNA-DNA-binding protein

gene

C

N

I

1.8

0.26

I

1.7

0.16

NC

0

0

W98785

m912b10.r1 Soares mouse embryo NbME13.5 14.5 Mus m

est

D

N

I

*

2.2

0.26

I

*

1.6

0.09

NC

0

0

M63445

“Mouse NAD-dependent methylenetetrahydrofolate dehyd

gene

A

N

I

1.9

0.26

NC

0

0

D

1.6

3

D63707

“Mouse mRNA for hepatoma derived growth factor (HDGF

gene

A

N

I

1.6

0.26

NC

0

0

D

1.2

0.1

X85802

M. musculus mRNA for testosterone induced transcript

gene

B

N

I

1.8

0.26

NC

0

0

D

1.6

0.2

AA124405

mq76b12.r1 Stratagene mouse melanoma (#937312) Mus

est

C

N

I

*

2.1

0.26

NC

*

0

0

D

1.7

0.2

L25274

“Mus musculus transmembrane glycoprotein (DM-GRASP)

gene

D

N

I

*

˜2.2

0.25

I

˜3.5

0.75

I

1.6

0.1

U18366

“Mus musculus cardiotrophin-1 mRNA, complete cds”

gene

A

N

I

*

2.2

0.25

I

*

3

0.59

NC

0

0

X81987

M. musculus mRNA for TAX responsive element binding pr

gene

C

N

D

1.3

0.25

D

1.4

0.44

NC

0

0

U58494

“Mus musculus melanoma cell-derived intracisternal A-part

gene

D

N

I

2

0.25

I

2.3

0.44

NC

0

0

M74227

“Mouse cyclophilin C (cyp C) mRNA, complete cds

gene

D

N

I

1.9

0.25

I

2.1

0.42

NC

0

0

K02927

“Mouse ribonucleotide reductase subunit M1 mRNA, com

gene

A

N

MI

1.7

0.25

I

1.9

0.37

NC

0

0

W85321

“mf48b01.r1 Soares mouse embryo NbME13.5 14.5Mus m

est

B

N

I

1.9

0.25

I

2.1

0.35

NC

0

0

D50523

Mouse mRNA for TI-227

gene

C

N

I

2.1

0.25

I

2.4

0.33

NC

0

0

U47024

“Mus musculus matemal-embryonic 3 (Mem3) mRNA, com

gene

C

N

I

1.9

0.25 I

2

0.3

NC

0

0

AA009169

“mh01g11.r1 Soares mouse embryo NbME13.5 14.5 Mus m

est

A

N

I

2.1

0.25

I

2

0.24

NC

0

0

D87990

“House mouse; Musculus domesticus mRNA for UDP-gala

gene

C

N

MI

1.7

0.25

I

1.7

0.24

NC

0

0

W91398

mf93c05.r1 Soares mouse embryo NbME13.5 14.5 Mus mu

est

B

N

I

1.9

0.25

I

1.9

0.22

NC

0

0

W54288

“md44f11.r1 Soares mouse embryo NbME13.5.14.5 Mus m

est

D

N

I

1.6

0.25

I

1.6

0.2

NC

0

0

U58987

“Mus musculus putative endo/exonuclease MmMre11a (Mr

est

C

N

I

*

2.4

0.25

I

*

2.1

0.16

NC

0

0

Y07685

M. musculus mRNA for NfiBi-protein (exon 2-12)

gene

C

N

I

*

˜2.2

0.25

I

*

˜1.8

0.15

NC

0

0

AA062237

m165a03.r1 Stratagene mouse kidney (#937315) Mus musc

est

C

N

I

2.3

0.25

I

1.9

0.13

NC

0

0

AA168903

ms39b07.r1 Life Tech mouse embryo 13 5dpc 10666014

est

B

N

I

*

˜2.2

0.25

I

*

˜1.8

0.12

NC

0

0

U16818

“Mus musculus UDP glucuronosyltransferase (UGT1-06) m

gene

A

N

I

*

2.3

0.25

I

8

1.6

0.06

D

1.5

0.1

U27267

“Mus musculus LPS-induced C-X-C chemokine LIX precurs

gene

A

N

I

2.4

0.25

NC

0

0

D

1.8

0.2

X03505

Mouse gene exon 2 for serum amyloid A (SAA) 3 protein

gene

A

N I

2.1

0.24

I

2.8

0.58

NC

0

0

U58033

“Mus musculus p34 cdc2 kinase mRNA, complete cds”

gene

D

N

I

1.7

0.24

I

2

0.45

NC

0

0

AA105703

mm66b08.r1 Stratagene mouse macrophage (#937306) Mu

est

C

N

I

1.8

0.24

I

2

0.39

NC

0

0

W97817

mg03c03.r1 Soares mouse embryo NbME13.5 14.5 Mus m

est

A

N

MI

*

2.3

0.24

I

*

˜2.7

0.38

NC

0

0

M27844

“Mus musculus calmodulin synthesis (CaM) cDNA, comple

gene

D

N

I

1.5

0.24

I

1.6

0.31

NC

0

0

D00659

“Mouse CYP XIX gene encoding aromatase P450, (EC 1.1

gene

A N

D

*

˜2.2

0.24

D

*

˜2.2

0.26

NC

*

0

0

M64403

“Mus domesticus cyclin-like protein (induced by colony-st

gene

D

N

I

1.9

0.24

I

1.9

0.23

NC

0

0

L25125

“Mouse RNA helicase and RNA-dependent ATPase from th

geneA

N

I

2

0.24

I

1.9

0.21

NC

0

0

X61399

Mouse F52 mRNA for a novel protein

gene

B

N

I

1.7

0.24

I

1.6

0.19

NC

0

0

X07295

M. musculus mitochondrial malate dehydrogenease

gene 5′ff

gene

D

N

I

1.6

0.24

I

1.5

0.19

NC

0

0

W51028

est

D

Y

I

*

˜2.3

0.24

I

*

˜2.0

0.16

NC

0

0

W64587

“md89g12.r1 Soares mouse embryo NbME13.5 14.5 Mus m

est

D

N

I

*

1.9

0.24

I

*

1.7

0.16

NC

0

0

W98255

me74g02.r1 Soares mouse embryo NbME13.5 14.5 Mus m

est

D

N

I

1.6

0.24 I

1.4

0.12

NC

0

0

M32240

“Mouse growth arrest specific protein (gas3) mRNA, com

gene

D

N

I

1.9

0.24

I

1.3

0.04

D

1.4

0.2

W75205

me45c10.r1 Soares mouse embryo NbME13.5 14.5 Mus r

est

A

N

I

1.8

0.24

NC

0

0

NC

0

0

AA002605

mg44g07.r1 Soares mouse embryo NbME13.5 14.5.Mus mu

est

B

N

I

1.7

0.24

NC

0

0

NC

0

0

L26528

“Mus musculus Ra b11b mRNA, complete cds”

gene

D

N

I

1.8

0.24

NC

0

0

NC

0

0

X13171

Mouse mRNA for H1 histone subtype H1(0)

gene

A

N

I

*

˜2.3

0.23

I

*

˜4.8

1.29

NC

0

0

X783O4

“M. musculus (SRP9) signal recognition particle subunit m

gene

C

N

I

1.7

0.23

I

2.8

1.11

I

1.6

0.3

W89293

mf62h02.rt Soares mouse embryo NbME13.5 14.5 Mus mu

est

B

N

I

1.9

0.23

I

2.6

0.61

NC

0

0

AA002852

mg38f06.r1 Soares mouse embryo NbME13.5 14.5 Mus m

est

D

N

I

*

˜2.2

0.23

I

*

˜3.2

0.58

NC

0

0

X70303

M. musculus MC3 mRNA for proteasome

gene

B

N

I

1.5

0.23

I

1.8

0.43

NC

0

0

L25126

“Mus musculus RNA helicase mRNA, complete cds”

gene

A

N

I

*

2.3

0.23

I

*

2.9

0.4

NC

0

0

X77557

M. musculus cadL mRNA

gene

A

N

MI

2

0.23

MI

2.3

0.39

NC

0

0

U05809

“Mus musculus LAF1 transketolase mRNA, complete cds”

gene

B

N

D

1.6

0.23

D

1.8

0.32

NC

0

0

AA105072

mp42a09.r1 Barstead MPLRB1 Mus musculus cDNA clone

est

D

N

I

*

˜2.3

0.23

I

*

˜1.9

0.13

NC

*

0

0

W57495

est

D

Y

D

1.4

0.23

D

1.3

0.1

NC

0

0

X56123

Mouse mRNA fortalin

gene

C

N

I

1.5

0.23

I

1.3

0.09

NC

0

0

AA002458

mg13c11.r1 Soares mouse embryo NbME13.5 14.5 Mus r

est

C

N

MI

1.9

0.23

MI

1.5

0.09

NC

0

0

L39017

“Mus musculus endothelial cell activated protein C recepto

gene

A

N

I

*

2.3

0.23

NC

*

0

0

NC

0

0

D16432

“Mouse murine CD63 mRNA for murine homologue of CD

gene

A

N

I

1.4

0.23

NC

0

0

D

1.4

0.4

W91509

mg16c06.r1 Soares mouse embryo NbME13.5 14.5 Mus r

est

A

N

I

1.8

0.23

NC

0

0

D

1.7

0.3

AA145829

mq68e09.r1 Soares 2 NbMT Mus musculus cDNA clone 58

est

D

N

I

1.6

0.23

NC

0

0

NC

0

0

AA154968

L95e07.r1 Stratagene mouse embryonic carcinoma (#937

est

D

N

I

*

2.2

0.23

NC

*

0

0

NC

0

0

AA035984

m170f08.r1 Soares mouse embryo NbME13.5 14.5 Mus mu

est

B

N

I

*

˜2.1

0.22

I

*

˜3.6

0.79

NC

0

0

U08215

“Mus musculus Hsp70- related NST-1 (hsr.1) mRNA, com

gene

B

N

I

2.2

0.22

I

3.2

0.62

NC

0

0

U09507

“Mus musculus p21 (Waf1) mRNA, complete cds

gene

A

N

I

1.6

0.22

I

2

0.53

MI

1.3

0.1

AA137883

mq80b01.r1 Stratagene mouse melanoma (#937312) Mus

est

A

N

I

2

0.22

I

2.6

0.46

NC

0

0

AA162710

mn42d04.r1 Beddington mouse embryonic region Mus mu

est

D

N

I

˜2.3

0.22

I

˜2.8

0.38

NC

0

0

AA116335

mp97e11.r1 Soares 2NbMT Mus musculus cDNA clone 5

est

C

N

MI

*

˜2.3

0.22

MI

* ˜2.3

0.25

NC

0

0

W83743

mf32a08.r1 Soares mouse embryo NbME13.5 14.5 Mus mu

est

A

N

I

2

0.22

I

1.9

0.18

NC

0

0

U07159

“Mus musculus medium-chain acyl-CdA dehydrogenease mi

gene

A

N

I

2.2

0.22

I

1.9

0.14

NC

0

0

L07063

“Mus musculus FKBP65 binding protein mRNA, complete

gene

A

N

I

1.6

0.22

I

1.4

0.14

MC

1.1

0

AA118131

mn10c11.r1 Beddington mouse embryonic region Mus musc

est

A

N

I

*

2.1

0.22

I

*

1.5

0.05

NC

0

0

L46855

“Mus musculus ret finger protein, mRNA, complete cds”

gene

B

N I

*

1.8

0.22

I

*

1.3

0.04

NC

0

0

X63190

M. musculus PEA3 mRNA

gene

B

N

MI

*

2.3

0.22

NC

*

0

0

NC

*

0

0

W17473

mb60c09.r1 Soares mouse p3NMF19.5 Mus musculus cDN

est

D

N

MD

2.1

0.22

NC

0

0

NC

0

0

U23789

“Mus musculus zipper protein kinase (ZPK) mRNA, comple

gene

A

N

I

2.2

0.22

NC

0

0

D

3

0.7

W29468

“mb99d10.r1 Soares mouse p3NMF19.5 Mus musculus cD

est

C

N

I

1.7

0.22

NC

0

0

D

1.3

0.1

U03421

“Mus. musculus interleukin-11 mRNA, complete cds

gene

C

N

I

*

˜2.2

0.21

I

*

˜9.4

3.76

I

4.2

1.9

AA097711

“mo15h10.r1 Life Tech mouse embryo 13 5dpc 10666014

est

C

N

I

*

2

0.21

I

*

2.8

0.54

NC

0

0

X61433

M. mulculus mRNA for sodium/potassium ATPase beta su

gene

B

N

I

*

2

0.21

I

*

2.4

0.36

NC

0

0

X74856

M. musculus L28 mRNA for ribosomal protein L28

gene

D

N

D

1.3

0.21

D

1.4

0.32

NC

0

0

AA024288

mh91g06.r1 Soares mouse placenta 4NbMP13.5 14.5 Mus m

est

D

N

I

2.1

0.21

I

2.3

0.3

NC

0

0

AA144400

mr98b11.r1 Stratagene mouse embryonic carcinoma (#9.37

est

A

N

I

2

0.21

I

1.9

0.18

MC

0

0

AA063858

mj87f04.r1 Soares mouse p3NMF19.5 Mus musculus cDNA

est

D

N

I

2.1

0.21

I

2

0.17

NC

0

0

L06144

“Mus musculus protein kinase (Ptk) mRNA, complete cds”

gene

A

N

I

1.8

0.21

I

1.7

0.16

NC

0

0

Y09632

M. musculus mRNA for kinesin-like protein 174

gene

C

N

I

1.8

0.21

I

1.6

0.16

NC

0

0

W98413

mg20g06.r1 Soares mouse embryo NbME13.5 14.5 Mus m

est

A

N

I

*

1.8

0.21

I

1.6

0.15

NC

0

0

W08120

mb40b05.r1 Soares mouse p3NMF19.5 Mus musculus cD

est

B

N

I

1.3

0.21

I

1.3

0.14

NC

0

0

AA073341

mm93a05.r1 Stratagene mouse heart(#937316) Mus musc

est

C

N

I

2.1

0.21

I

1.8

0.12

NC

0

0

M69042

“Mouse protein kinase C delta mRNA, complete cds”

est

A

N

I

1.9

0.21

I

1.6

0.1

D

1.2

0

W34969

mc33e08.r1 Soares mouse p3NMF19.5 Mus musculus cDN

est

D

N

D

˜2.0

0.21

NC

0

0

NC

0

0

M38314

“Mouse pulmonary surfactant protein SP-C (SFTP2) gene,

gene

A

N

I

*

˜2.0

0.21

NC

*

0

0

D

˜4.1

1

AA009014

mg97b12.r1 Soares mouse embryo NbME13.5 14.5 Mus mu

est

A

N

I

*

2.1

0.21

NC

*

0

0

MC

1.8

0.2

U09419

“Mus musculus retinoid X receptor interacting protein (RIF

gene

A

N

I

1.9

0.21

NC

0

0

D

1.4

0.1

W65634

me14h04.r1 Soares mouse embryo NbME13.5 14.5 Mus m

est

A

N

MI

1.9

0.21

NC

0

0

D

1.5

0.1

X75313

M. musculus (C57BL/6) GB-like mRNA

gene

B N

D

1.2

0.21

NC

0

0

NC

0

0

U02304

“Mus musculus LAF1 glycosaminoglycan N-acetytglucosar

gene

B

N

MI

*

2.3

0.21

NC

*

0

0

NC

0

0

W17589

mb77a08.r1 Soares mouse p3NMF19.5 Mus musculus cDN

est

B

N

I

1.9

0.21

NC

0

0

NC

0

0

AA067092

mm31e06.r1 Stratagene mouse skin (#937313) Mus muscu

est

C

N

I

*

˜2.0

0.21

NC

*

0

0

NC

0

0

D87744

“Mouse mRNA for DRPLA protein, complete cds”

gene

C

N

I

*

2

0.2

NC

*

0

0

NC

0

0

AA139602

“mq40f05.r1 Barstead MPLRB1 Mus musculus cDNA clone

est

C

N

I

1.7

0.21

NC

0

MC

1.2

0

U13705

“Mus musculus domesticus C57BL/6J plasma glutathione

gene

D

N

D

1.6

0.2

D

2.1

0.54

D

1.3

0.1

AA064066

mj62d04.r1 Soares mouse p3NMF19.5 Mus musculus cDN

est

C

N

D

1.3

0.2

D

1.5

0.46

NC

0

0

AA114576

mo63h09.r1 Stratagene mouse heart (#937316) Mus musc

est

C

N

I

1.7

0.21

I

1.8

0.24

NC

0

0

U33840

“Mus musculus TRAF-related protein (TRAFamn) mRNA, c

gene

A

N

I

*

˜2.0

0.2

I

*

˜2.0

0.19

D

1

0

M23568

“Mus musculus (clone pFT27) transmembrane protein mR

gene

A

N

I

1.6

0.2

I

1.6

0.18

NC

0

0

W54566

md06c05.r1 Soares mouse embryo NbME13.5 14.5 Mus mu

est

A

N

D

1.5

0.2

D

1.4

0.15

NC

0

0

AA007816

mg66g09.r1 Soares mouse embryo NbME13.5 14.5 Mus m

est

B

N

I

*

˜1.9

0.2

I

*

˜1.7

0.15

NC

0

0

W29434

mb99f07.r1 Soares mouse p3NMF19.5 Mus musculus cDN

est

D

N

I

1.4

0.2

I

1.3

0.11

NC

0

0

W47728

mc89f02.r1 Soares mouse embryo NbME13.5 14.5 Mus m

est

A

N

I

*

2.1

0.2

NC

*

0

0

NC

0

0

W48968

est

A

Y

I

*

˜1.9

0.2

NC

*

0

0

D

1.2

0

X65657

M. musculus (testis) Sox-5 mRNA

gene

C

N

D

1.9

0.2

NC

0

0

NC

0

0

AA170690

ms85g09.r1 Soares mouse 3NbMS Mus musculus cDNA

est

B

N

I

1.6

0.2

NC

0

0

D

1.3

0.1

M22326

“Mouse growth factor-induced protein (zif/268) mRNA, c

gene

D

N

I

*

1.9

0.19

I

*

6.8

3.94

I

3.6

2.6

U70494

“Mus musculus histone H2A.Z (H2A.Z) mRNA, complete c

gene

C

N

MI

1.4

0.19

I

1.7

0.44

I

1.2

0.1

M33467

Mouse dilute lethal-20J (d-t20J) deletion breakpoint fusio

est

A

N

MI

*

˜2.2

0.19

I

*

˜2.8

0.39

NC

0

0

AA000574

mg23g05.r1 Soares mouse embryo NbME13.5 14.5 Mus m

est

B

N

MI

* ˜2.1

0.19

I

*

˜2.6

0.36

NC

0

0

AA161949

mr92c02.r1 Stratagene mouse embryonic carcinoma (#93

est

D

N

I

1.4

0.19

I

1.6

0.33

NC

0

0

AA163911

“m27e02.r1 Soares mouse eNbMS Mus musculus cDNA cl

est

C

N

I

*

2

0.19

I

*

2.4

0.32

NC

0

0

J05186

“Mouse protein disulfide isomerase related protein (ERp72

gene

A

N

I

1.5

0.19

I

1.6

6.3

NC

0

0

L27842

“Mouse peroxisome assembly factor-1 (PMP35) gene, com

gene

C

N

I

*

2.1

0.19

I

*

2.3

0.28

NC

0

0

X80992

M. musculus Vgr-1 mRNA

gene

A

N

MD

˜2.1

0.19

D

˜2.1

0.23

NC

0

0

Z49916

M. musculus mRNA for CLCN4

gene

B

N

MI

2

0.19

I

2.1

0.23

NC

0

0

X55038

Mouse mCENP-B gene for centromere autoantigene B. (CEN

gene

B

N

I

1.8. 0.19

I

1.9

0.21

NC

0

0

AA146194

mq65e10.r1 Soares 2NbMT Mus musculus cDNA clone 5

est

C

N

I

1.9

0.19

MI

1.9

0.18

NC

0

0

W46019

mc77h09.r1 Soares mouse embryo NbME13.5 14.5 Mus m

est

C

N

D

1.6

0.19

D

1.5

0.16

NC

0

0

L26489

“Mus musculus furin (FUR) mRNA, complete cds”

gene

D

N

I

1.7

0.19

I

1.7

0.15

NC

0

0

X16705

Mouse mRNA for lamin B

gene

D

N

I

*

˜2.2

0.19

I

*

˜2.0

0.14

NC

0

0

U20238

“Mus musculus GTPase-activating protein GAPIII, mRNA, c

gene

B

N

I

1.9

0.19

I

1.7

0.12

NC

0

0

M63649

“Mouse M-twist gene, complete cds“

gene

A

N

I

1.9

0.19

I

1.7

0.11

NC

0

0

U36384

“Mus musculus twist-related bHLH protein Dermo-1 mRN

gene

A N

I

1.6

0.19

I

1.3

0.08

NC

0

0

U29055

“Mus musculus G protein beta 36 subunit mRNA, complet

gene

C

N

I

1.5

0.19

M

1.1

0.03

D

1.3

0.1

W71558

me39g12.r1 Soares mouse embryo NbME13.5 14.5 Mus m

est

A

N

I

*

˜2.0

0.19

NC

*

0

0

MI

*

˜4.1

1

AA037997

m179d03.r1 Soares mouse p3NMF19.5 Mus musculus cDNA

est

B

N

I

*

˜1.9

0.19

NC

*

0

0

NC

0

0

W56940

md17f12.r1 Soares mouse embryo NbME13.5 14.5 Mus m

est

A

N

MI

*

2.2

0.19

NC

*

0

0

NC

0

0

AA103492

mo25b07.r1 Life Tech mouse embryo 13 5dpc 10666014

est

C

N

I

*

2

0.19

NC

*

0

0

NC

0

0

X83536

M. musculus mRNA for membrane-type matrix metalloprote

gene

B

N

I

1.5

0.18

I

2

0.54

NC

0

0

X93357

M. musculus mRNA for SYT

gene

C

N

I

1.7

0.18

I

2.3

0.51

MI

1.3

0.1

AA118729

mp57g08.r1 Soares 2NbMT Mus musculus cDNA clone 57

est

C

N

I

1.6

0.18

I

2

0.4

NC

0

0

AA032860

m125b10.r1 Soares mouse embryo NbME13.5 14.5 Mus mu

est

D

N

I

*

1.9

0.18

I

*

2.3

0.33

NC

0

0

AA106492

m191a03.r1 Stratagene mouse kidney (#937315) Mus muscu

est

D

N

I

1.8

0.18

I

2.1

0.29

NC

0

0

AA035938

m169g11.r1 Soares mouse embryo NbME13.5 14.5 Mus m

est

B

N

I

1.8

0.18

I

1.9

0.24

NC

0

0

AA168362

ms30f06.r1 Stratagene mouse skin (#937313) Mus muscul

est

D

N

I

*

˜2.0

0.18

I

*

˜2.1

0.22

NC

0

0

J02623

“Mouse cytosolic aspartate aminotransferase isoenzyme m

gene

D

N

I

1.8

0.18

I

1.9

0.21

NC

0

0

AA087270

mo12g12.r1 Life Tech mouse embryo 10 5dpc 10665016 M

est

C

N

MI

*

2

0.18

I

*

2.1

0.19

NC

0

0

D21831

“Mouse RXR-beta gene, exon 5, 6, 7, 8 and 9”

gene

D

N

MI

*

˜2.0

0.18

I

*

˜1.8

0.15

NC

0

0

X14206

Mouse mRNA for poly (ADP-ribose) polymerase (EC 2.4.2

gene

B

N

I

2.1

0.18

I

1.7

0.1

NC

0

0

D38162

Mouse mRNA for mouse a1(XI) collagene chain

gene

C

N

I

*

2.0

0.18

I

*

˜1.6

0.09

NC

0

0

D38581

Mouse mRNA for VNSP II (vomeronasal secretory protein

gene

C

N

MD

*

˜2.1

0.18

NC

*

0

0

NC

*

0

0

L23769

“Mouse microfibril-associated glycoprotein (Magp) mRNA,

gene

B

N

I

1.6

0.18

NC

0

0

NC

0

0

D37874

“Mouse fcrn mRNA for Fc receptor (FcRn), complete cds”

gene

B

N

I

1.7

0.18

NC

0

0

NC

0

0

X66405

M. musculus mRNA for collagene alpha1 (VI)-collagen

gene

B

N

I

1.5

0.18

NC

0

0

D

1.3

0.1

X58251

Mouse COL1A2 mRNA for pro-alpha-2(I) collagene

gene

B

N

I

1.2

0.18

NC

0

0

NC

0

0

X70398

M. musculus P311 mRNA

gene

B

N

MI

*

˜2.1

0.18

NC

*

0

0

NC

0

0

X80169

M. musculus mRNA for 200 kD protein

gene

C

N

I

1.6

0.18

NC

0

0

NC

0

0

W07927

mb40d05.r1 Soares mouse p3NMF19.5 Mus musculus cD

est

C

N

I

1.9

0.18

NC

0

0

NC

0

0

W08269

mb40b02.r1 Soares mouse p3NMF19.5 Mus musculus cDNA

est

C

N

I

1.3

0.18

NC

0

0

D

1.5

0.4

AA097267

mk16h10.r1 Soares mouse p3NMF19.5 Mus musculus cDN

est

D

N

I

*

2

0.18

NC

*

0

0

NC

0

0

X06086

Mouse mRNA for major excreted protein (MEP)

gene

D

N

I

1.4

0.18

0

0

NC

0

0

X69619

M. musculus mRNA for inhibin beta-A subunit

gene

B

N

I

*

2

0.17

I

*

7.5

3.62

I

3.8

1.9

L27990

“Mus musculus Ro protein mRNA, complete cds”

gene

A

N

MI

*

2

0.17

I

*

3.8

1.01

MI

1.9

0.3

AA051446

mj51c10.r1 Soares mouse embryo NbME13.5 14.5 Mus mus

est

B

N

I

*

2.1

0.17

I

3.0

0.47

NC

0

0

W63835

“md84c11.r1 Soares mouse embryo NbME13.5 14.5 Mus

est

A

N

I

2

0.17

I

2 7

0.39

NC

0

0

AA051538

mj52e04.r1 Soares mouse embryo NbME13.5 14.5 Mus m

est

B

N

MI

1.8

0.17

MI

2.1

0.29

NC

0

0

X06917

Mus musculus aspartate aminotransferase gene 5′-flank ar

gene

D

N

I

1.5

0.17

I

1.6

0.22

NC

0

0

D00472

“Mouse mRNA for cofilin, complete cds and flanks”

gene

D

N

I

1.3

0.17

I

1.3

0.22

NC

0

0

J04696

“Mouse glutathione S-transferase class m (GST5-5) mRN

gene

D

N

MI

1.8

0.17

I

1.9

0.2

NC

0

0

U62483

“Mus musculus ubiquitin conjugating enzyme (ubc4) mRN

gene

C

N

I

2

0.17

I

2

0.19

NC

0

0

AA108866

m163g07.r1 Stratagene mouse testis (#937308

Mus mu

est

D

N

I

*

1.8

0.17

I

*

1.9

0.19

NC

0

0

X12944

Mouse mRNA for HMG-17 chromosomal protein

gene

B

N

I

1.4

0.17

I

1.4

0.18

NC

0

0

L42177

“Mus musculus S182 protein mRNA, complete cds”

gene

D

N

I

1.9

0.17

I

1.9

0.17

NC

0

0

J04694

“Mus musculus alpha-1 type IV collagene (Co14a-1) mRNA,

gene

D

N

I

1.5

0.17

I

1.5

0.15

NC

0

0

U02313

“Mus musculus MAST205 protein kinase mRNA, complete

gene

B

N

I

1.7

0.17

I

1.6

0.12

NC

0

0

D26091

“House mouse; Musculus domesticus female mammary ca

gene

B

N

I

1.5

0.17

MI

1.4 0.11

NC

0

0

D13473

Mouse mRNA for Rad51 protein

gene

D

N

I

*

2

0.17

I

*

1.7

0.1

NC

0

0

M93422

“Mouse adenylyl cyclase type VI mRNA, complete cds”

gene

D

N

I

2

0.17

I

1.4

0.03

NC

0

0

W51476

est

A

Y

MI

*

˜2.0

0.17

NC

*

0

0

NC

*

0

0

AA108088

m158e05.r1 Stratagene mouse testis (#937308) Mus mus

est

C

N

MI

*

˜1.7

0.17

NC

*

0

0

NC

*

0

0

W65511

me10h02.r1 Soares mouse embryo NbME13.5 14.5 Mus m

est

A

N

MI

1.8

0.17

NC

0

0

NC

0

0

U48972

“Mus musculus spindlin (Spin) mRNA, complete cds ”

gene

B

N

I

*

˜2.1

0.17

NC

*

0

0

NC

0

0

X65687

M. musculus mRNA for serine-threonine protein kinase

gene

B

N

I

1.5

0.17

NC

0

0

NC

0

0

W89738

mf76h09.r1 Soares mouse embryo NbME13.5 14.5 Mus mu

est

B

N

I

1.9

0.17

NC

0

0

D

1.8

0.2

U36277

“Mus musculus I-kappa B alpha chain mRNA, complete cd

gene

A N

I

*

˜1.9

0.16

I

*

˜7.1

2.6

I

3.7

1.5

U44088

“Mus musculus TDAG51 (TDAG51) mRNA , complete cds”

gene

C

N

I

1.8

0.16

I

4.7

2.23

I

2.7

1.1

AA103783

mm91d10.r1 Stratagene mouse embryonic carcinoma RA

est

C

N

I

1.5

0.16

I

2.1

0.7

I

1.4

0.2

AA154214 mr33e01.r1 Soares mouse 3NbMS Mus musculus cDNA clo

est

D

N

I

*

2

0.16

I

*

3

0.51

NC

0

0

D90344

“Mouse mRNA for t-complex polypeptide 1A (Tcp-1a), co

gene

D

N

I

1.4

0.16

I

1.7

0.4

NC

0

0

U43918

“Mus musculus proliferation-assoclated protein 1 mRNA, c

gene

B

N

MI

1.5

0.16

I

1.7

0.3

NC

0

0

AA008650

mg87a07.r1 Soares mouse embryo NbME13.5 14.5 Mus m

est

D

N

I

*

1.8

0.16

I

*

2.1

0.3

NC

0

0

Z49085

M. musculus mRNA for mouse developmental kinase 2 (MD

gene

B

N

I

1.4

0.16

I

1.6

0.26

NC

0

0

L24118

“Mouse primary response gene B94 mRNA, 3′ end”

gene

A

N

I

1.8

0.16

I

2

0.24

NC

0

0

W29756

mc07e07.r1 Soares mouse p3NMF19.5 Mus musculus cDN

est

D

N

I

2

0.16

I

2.1

0.21

NC

0

0

U30839

“Mus musculus voltage dependent anion channel 3 mRNA

gene

C

N

I

1.4

0.16

I

1.4

0.19

NC

0

0

D87898

“House mouse; Musculus domesticus male brain mRNA for

gene

C

N

I

1.4

0.16

I

1.4

0.18

NC

0

0

W41817

mc63e10.r1 Soares mouse embryo NbME13.514.5 Mus mu

est

C

N

I

1.3

0.16

I

1.3

0.15

NC

0

0

W34756

“mc32g09.r1 Soares mouse p3NMF19.5 Mus musculus c

est

D

N

I

*

1.8

0.16

I

*

1.8

0.15

NC

0

0

AA062349

ml64d11.r1 Stratagene mouse kidney (#937315) Mus musc

est

C

N

D

1.5

0.16

D

1.4

0.13

NC

0

0

X70847

M. musculus mRNA for adenine nucteotide translocase

gene

C

N

I

1.3

0.16

I

1.3

0.12

NC

0

0

D28117

“Mouse RNA for magnesium dependent protein phosphagene

A

N

I

2

0.16

I

1.8

0.11

NC

0

0

D13545

“Mouse mRNA for primase large subunit, complete cds”

gene

A

N

I

*

2

0.16

I

*

1.8

0.09

NC

0

0

U41805

“Mus musculus putative T1/ST2 receptor binding protein

gene

B

N

I

1.6

0.16

I

1.4

0.08

NC

0

0

AA008793

mg99d09.r1 Soares mouse embryo NbM.E13.5 14.5 Mus m

est

B

N

MD

*

1.8

0.16

NC

*

0

0

NC

*

0

0

J62091

md84h04.r1 Soares mouse embryo NbME13.5 14.5 Mus m

est

A

N

I

1.5

0.16

NC

0

0

D

1.3

0.1

W77121

“me61c06.r1 Soares mouse embryo NbME13.5 14.5 Mus m

est

D

N

D

1.5

0.16

NC

0

0

NC

0

0

AA154337

ms61b04.r1 Stratagene mouse embryonic carcinoma (#193

est

C

N

I

*

˜1.8

0.15

I

*

˜3.5

0.77

NC

0

0

X62091

M. musculus Pgp-1 mRNA for CD44 (clone M4)

gene

D

N

I

1.7

0.15

I

2.5

0.53

I

1.4

0.1

D87691

“House mouse; Musculus domesticus mRNA for eRF1, par

gene

C

N

I

*

1.8

0.15

I

*

2.6

0.51

NC

0

0

AA051736

mj53a03.r1 Soares mouse embryo NbME13.5 14.5 Mus mu

est

B

N

I

*

˜1.9

0.15

I

*

˜2.8

0.45

I

*

1.5

0.1

AA096645

mo05a08.r1 Stratagene mouse lung 937302 Mus muscul

est

D

N

I

1.7

0.15

I

2.1

0.39

MI

1.3

0.1

W62036

“md84c07.r1 Soares mouse embryo NbME13.5 14.5 Mus

est

D

N

I

1.8

0.15

I

2.3

0.34

MI

1.3

0.1

X78990

M. musculus mRNA for testin 2

gene

D

N

I

*

1.8

0.15

I

*

2.2

0.33

NC

0

M73748

“Mouse OTS-8 mRNA, complete cds”

gene

D

N

I

1.5

0.15

I

1.6

0.19

NC

0

0

AA008683

mg83e03.r1 Soares mouse embryo NbME13.5 14.5 Mus m

est

B

N

I

1.6

0.15

I

1.6

0.18

NC

0

0

M15525

“Mouse laminin B1 mRNA, complete cds”

gene

D

N

I

1.6

0.15

I

1.7

0.19

NC

0

0

U69599

“Mus musculus interferon gamma receptor second chain (

gene

C

N

I

*

1.9

0.15

I

*

2

0.17

NC

0

0

M28540

“Mouse beta-glucoronidase (Gus-s) mRNA, complete cds”

gene

D

N

I

1.9

0.15

I

1.9

0.15

NC

0

0

U22399

“Mus musculus Cdk-inhibitor p57k1P2 (k1P2) mRNA; comp

gene

A

N

I

1.8

0.15

I

1.5

0.08

NC

0

0

U34960

“Mouse G protein beta 2 subunit mRNA; complete cds”

gene

A

N

I

1.4

0.15

I

1.3

0.08

NC

0

0

X16834

Mouse mRNA for Mac-2 antigene

gene

D

N

I

1.5

0.15

I

1.3

0.08

NC

0

0

AA119665

mp68h05.r1 Soares 2NbMT Mus musculus cDNA clone 5744

est

C

N

I

*

˜1.9

0.15

MI

*

˜1.4

0.05

NC

0

0

U17343

“Mus musculus signal recognition particle receptor beta s

gene

A

N

I

*

1.9

0.15

MI

*

1.4

0.03

D

1.4

0.1

AAD13526

mh10h02.r1 Soares mouse placenta 4NbMP13.5 14.5 Mu”

est

B

N

MI

*

˜2.0

0.15

NC

*

0

0

NC

*

0

0

U69137

“Mus musculus T2-cadherin mRNA, partial cds”

gene

C

N MI

*

2

0.15

NC

*

0

0

NC

*

0

0

W551l7

est

A

Y

I

*

1.7

0.15

NC

*

0

0

NC

0

0

JD526I

“Mouse protective protein (Mo54) mRNA, complete cds”

gene

A

N

I

1.4

0.15

NC

0

0

D

1.5

0.3

W65510

me10h01.r1 Soares mouse embryo NbME13.5 14.5 Mus m

est

A

N

I

1.4

0.15

NC

0

0

D

1.2

0.1

X82D67

M. musculus mRNA for thiol-specific antioxidant

gene

A

N

I

1.3

0.15

NC

0

0

D

1.3

0.1

AA049707

“mj11gD8.r1 Soares mouse embryo NbME13.5 14.5 Mus

est

B

N

MI

*

˜1.9

0.15

NC

*

0

0

NC

0

0

X69025

M. musculus of PCTAIRE-1 mRNA encoding protein kinase

gene

B

N

I

1.7

0.15

NC

0

0

D

1.5

0.1

W08050

mb38d12.r1 Soares mouse p3NMF19.5. Mus musculus cDN

est

C

N

I

*

1.7

0.15

NC

*

0

0

NC

0

0

U12473

“Mus musculus Balb/c conserved helix-loop-helix ubiquitou

gene

C

N

I

*

˜1.8

0.14

I

*

˜3.8

0.9

NC

0

0

U51196

“Mus musculus APC-binding protein EB1 homolog mRNA,

gene

B

N

I

1.6

0.14

I

2.1

0.35

NC

0

0

J05479

“Mouse calcineurin catalytic subunit mRNA, complete cds

gene

D

N

I

*

˜2.0

0.14

I

*

˜2.5

0.26

MI

1.2

0

AA154743

mt64c04.r1 Soares mouse lymph node NbMLN Mus muscu

est

A

N

I

1.9

0.14

I

2.2

0.24

NC

0

0

U76546

“Mus musculus ADP-ribosylation factor-like protein 4 mRN

gene

C

N

I

*

˜1.9

0.14

I

*

˜2.2

0.23

NC

*

0

0

W82209

me99f01.r1 Soares mouse p3NMF19.5 Mus musculus cDN

est

A

N

MI

1.4

0.14

I

1.5

0.19

NC

0

0

AA028877

mh90g10.r1 Soares mouse placenta 4NbMP13.5 14.5 Mus

est

B

N

I

1.4

0.14

I

1.5

0.17

NC

0

0

AA039108

m199d10.r1 Soares mouse embryo NbME13.5 14.5 Mus mu

est

B

N

MI

*

˜1.9

0.14

MI

*

˜1.9

0.15

NC

0

0

U35623

“Mus musculus EAT/MCL-1 mRNA, complete cds”

gene

D

N

I

1.7

0.14

I

1.7

0.15

NC

0

0

AA016424

mh38102.r1 Soares mouse placenta 4NbMP13.5 14.5 Mus

est

D

N

I

1.6

0.14

I

1.6

0.12

NC

0

0

AA015570

m161f10.r1 Soares mouse embryo NbME13.5 14.5 Mus mus

est

B

N

I

*

1.9

0.14

I

*

1.7

0.08

NC

0

0

M36120

“Mouse keratin 19 gene, complete cds”

gene

D

N

I

1.8

0.14

I

1.4

0.04

NC

0

0

W46019

mc77h09.r1 Soares mouse embryo NbME13.5 14.5 Mus m

est

C

N

MD

1.6

0.14

NC

0

0

NC

*

0

0

AA10L455

mp08f02.r1 Life Tech mouse embryo 8 5dpc 10664019 M

est

A

N

MD

1.4

0.14

NC

0

0

NC

0

0

L40459

“Mus musculus latent transforming growth factor-beta bin

gene

A

N

I

1.6

0.14

NC

0

0

MD

1.7

0.2

U49739

“Mus musculus unconventional myosin VI (sv) mRNA, com

gene

B

N

I

*

1.9

0.14

NC

*

0

0

NC

0

0

X69620

M. musculus mRNA for inhibin beta-B subunit

gene

B

N

I

*

˜1.8

0.14

MI

*

˜1.0

D

˜3.1

0.5

X51905

Mouse Ldh-2 mRNA for lactate dehydrogenease-B (EC 1.1

gene

B

N

MI

1.7

0.14

NC

0

0

MD

1.6

0.2

AA073296

mm83a12.r1 Stratagene mouse embryonic carcinomaRA (

est

C

N

I

1.7

0.14

NC

0

0

MD

1.8

0.2

D10024

“Mouse mRNA for protein-tyrosine kinase substrate p36 (

gene

C

N

I

1.2

0.14

NC

0

0

NC

0

0

M32599

“Mouse glyceraldehyde-3-phosphate dehydrogenease mRN

gene

D

N

I

1.3

0.14

NC

0

0

NC

0

0

W17745

mb77h01.r1 Soares mouse p3NMF19.5 Mus musculus cD

est

D

N

I

1.5

0.14

NC

0

0

D

1.7

0.4

L24554

“Mus musculus adenylosuccinate synthetase mRNA, comp

gene

C

N

I

1.7

0.13

I

3.1

0.78

NC

0

0

W07963

mb45h07.r1 Soares mouse p3NMF19.5 Mus musculus cDN

est

C

N

I

*

1.7

0.13

I

*

2.8

0.63

NC

0

0

X02452

Mouse ki-ras cellular oncogene exon 1 from Y1 adrenal tu

gene

B

N

I

*

˜1.8

0.13

I

*

˜2.6

0.36

NC

*

0

0

W45817

mc80d09.r1 Soares mouse embryo NbME13.5 14.5 Mus m

est

D

N

I

*

˜1.7

0.13

I

*

˜2.5

0.36

MI

*

1.4

0.1

U52951

“Mus musculus putative transcnptional regutator mEnx-1

gene

C

N

I

*

˜1.9

0.13

I

*

˜2.4

0.26

NC

0

0

AA014138

mh29a07:r1 Soares mouse placenta 4NbMP13.5 14.5 Mus

est

B

N

I

1.8

0.13

I

2.1

0.22

NC

0

0

W78418

me84ft2.r1 Soares mouse embryo NbM.E13.5 14.5 Mus m

est

A

N

I

1.8

0.13

I

2

0.19

NC

0

0

W17411

mb58c09.r1 Soares mouse p3NMF19.5 Mus musculus cD

est

D

N

I

1.3

0.13

I

1.3

0.19

NC

0

0

AA104315

mo50a06.r1 Life Tech mouse embryo 10 5dpc 10665016

est

C

N

MI

*

˜1.7

0.13

I

*

˜1.9

0.18

NC

*

0

0

Z54179

M. musculus mRNA (evolutionary conserved transcript)

gene

C

N

I

1.6

0.13

I

1.8

0.18

NC

0

0

U41751

“Mus musculus p53 responsive (E124) mRNA, complete cd

gene

B

N

I

1.5

0.13

I

1.5

0.11

NC

0

0

Y09419

M. musculus mRNA for spermine synthase

gene

C

N

I

1.6

0.13

I

1.5

0.11

NC

0

0

X65553

M. musculus mRNA for poly(A) binding Protein

gene

C

N

D

1.3

0.13

D

1.2

0.1

NC

0

0

L35528

“Mus musculus manganese superoxide dismutase (MnSOD

gene

A

N

I

1.7

0.13

I

1.5

0.09

NC

0

0

AA124273

mq22d04.r1 Barstead MPLRB1 Mus musculus cDNA clone

est

D

N

I

1.6

0.13

I

1.5

0.09

NC

0

0

X80638

M. musculus rhoC mRNA

gene

B

N

I

1.3

0.13

I

1.3

0.08

NC

0

0

X71422

M. musculus Hoxd-11 gene

gene

B

N

I

*

˜1.7

0.13

MI

*

˜1.5

0.07

NC

0

0

M98035

“Mus musculus guanine nucleotide exchange factor delta

gene

A

N

I

1.6

0.13

MI

1.4

0.07

MD

1.1

0

AA138105

mq30a03.r1 Barstead MPLRB1 Mus musculus cDNA clone

est

D

N

I

1.4

0.13

I

1.2

0.05

NC

0

0

M90316

“Mouse S37 (non-leukocyte isoform) mRNA, complete cd

gene

A N

I

1.4

0.13

NC

0

0

D

1.5

0.2

W53694

md11e11.r1 Soares mouse embryo NbME13.5 14.5 Mus mu

est

A

N

I

1.5

0.13

NC

0

0

NC

0

0

AA068302

mm62a09.r1 Stratagene mouse embryonic carcinoma (#9

est

A

N

I

*

1.6

0.13

NC

*

0

0

MD

1.2

0

U43836

“Mus musculus VEGF-related factor mvrf186 precursor mR

gene

B

N

I

1.6

0.13

NC

0

0

D

2.2

0.5

0

. L

& 9

X59846

M. musculus GAS 6 mRNA associated with growth-arrest

gene

B

N

I

1.7

0.13

NC

0

0

MC

3.5

1.1

U58884

“Mus musculus SH3-contalning protein SH3P7 mRNA, com

gene

C

N

I

1.5

0.13

NC

0

0

D

1.5

0.2

X97796

M. musculus mRNA homologous to S. cerevisiae RAD54

gene

C

N

MI

*

1.9

0.13

NC

*

0

0

NC

0

0

AA106625

mi87g11.r1 Stratagene mouse kidney (#937315) Mus mu

est

C

N

MD

1.8

0.13

NC

0

0

NC

0

0

AA114811

“mn17e12.r1 Beddington mouse embryonic region Mus mus

est

C

N

D

1.3

0.13

NC

0

0

NC

0

0

U64033

“Mus musculus Tera (Tera) mRNA, complete cds”

gene

C N

I

*

˜1.7

0.12

I

*

˜3.1

0.58

NC

0

0

AA002604

mg44g304.r1 Soares mouse embryo NbME13.5 14.5 Mus m

est

B

N

I

*

˜1.7

0.12

I

*

˜3.0

0.55

I

1.7

0.1

W17482

mb60e11.r1 Soares mouse p3NMF19.5 Mus musculus cDN

est

D

N

I

1.6

0.12

I

2.3

0.47

I

1.4

0.2

U16322

“Mus musculus basic transcription factor MITF-2B mRNA,

gene

B

N

I

*

˜1.7

0.12

I

˜2.4

0.3

NC

0

0

W34965

mc33d07.r1 Soares mouse p3NMF19.5 Mus musculus cD

est

D

N

I

1.5

0.12

I

1.9

0.3

I

1.2

0.1

M95408

“Mouse focal adhesion kinase mRNA, complete cds”

gene

D

N

I

1.7

0.12

I

1.8

0.16

NC

0

0

W13461

mb34g09.r1 Soares mouse p3NMF19.5 Mus musculus cD

est

D

N I

1.4

0.12

I

1.4

0.15

NC

0

0

W71125

me31h04.r1 Soares mouse embryo NbME13.5 14.5 Musm

est

D

N

I

1.3

0.12

I

1.4

0.14

NC

0

0

AA035951

m170c01.r1 Soares mouse embryo NbME13.5 14.5 Mus mu

est

A

N

I

1.4

0.12

I

1.4

0.13

NC

0

0

AA124955

mp80g04.r1 Soares 2NbMT Mus musculus cDNA clone 57

est

C

N

I

1.6

0.12

I

1.6

0.13

NC

0

0

AA120173

mn33h12.r1 Beddington mouse embryonic region Mus mus

est

C

N

I

1.4

0.12

I

1.4

0.12

NC

0

0

W13162

ma74d12.r1 Soares mouse p3NMF19.5 Mus musculus cDN

est

D

N

I

1.4

0.12

I

1.3

0.08

NC

0

0

Z71268

M. musculus mRNA for CMP-sialic acid transporter

gene

C

N

I

*

˜1.9

0.12

I

*

˜1.6

0.06

NC

0

0

U43144

“Mus musculus phospholipase C beta3 mRNA, complete c

gene

B

N

I

1.5

0.12

I

1.3

0.04

NC

0

0

W57021

md52b03.r1 Soares mouse embryo NbME13.5 14.5 Mus m

est

A

N

MI

1.7

0.12

NC

0

0

NC

0

0

U13878

“Mus musculus neural-restrictive silencer factor mRNA, p

gene

A

N

I

*

˜1.6

0.12

I

*

˜1.0

0

NC

0

0

W71692

me34f05.r1 Soares mouse embryo NbME13.5 14.5 Mus mu

est

A

N

MI

*

1.8

0.12

NC

*

0

0

NC

0

0

L05439

“Mouse insulin-like growth factor binding protein 2 (IGFBP

gene

A

N

I

*

1.7

0.12

NC

*

0

0

NC

0

0

X14972

Mouse mRNA for alpha-adaptin (C)

gene

B N

I

1.5

0.12

NC

0

0

D

1.6

0.2

Z31399

M. musculus Ccth mRNA for CCT eta subunit (chaperonin

gene

B N

MI

1.3

0.12

NC

0

0

NC

0

0

W89863

mf76107.r1 Soares mouse embryo NbME13.5 14.5 Mus mu

est

B

N

I

1.5

0.12

NC

0

0

D

1.3

0.1

AA071662

est

C

Y

MI

1.4

0.12

NC

0

0

D

1.3

0.1

W29920

mc08e02.r1 Soares mouse p3NMF19.5 Mus musculus cD

est

D

N

I

*

1.7

0.12

NC

*

0

0

NC

0

0

AA162215

mn44b04.r1 Beddington mouse embryonic region Mus mus

est

D

N

I

1.7

0.11

I

2.3

0.35

MI

1.4

0.1

K02138

“Mouse germline IgM chain gene, mu-delta region”

gene

D

N

D

1.8

0.11

D

2.6

0.31

NC

0

0

AA103457

mo24g05.r1 Life Tech mouse embryo 13 5dpc 10666014

est

D

N

I

1.6

0.11

I

2

0.23

MI

1.2

0

W34066

ma85b11.r1 Soares mouse p3NMF19.5 Mus musculus cD

est

D

N

I

1.4

0.11

I

1.6

0.22

NC

0

0

X98475

M. musculus VASP gene

gene

C

N

I

1.6

0.11

I

1.8

0.2

NC

0

0

AA007747

mg63a08.r1 Soares mouse embryo NbME13.5 14.5 Mus m

est

B

N

I

*

1.8

0.11

I

*

2

0.17

NC

0

0

AA116706

“mn20h06.r1 Beddington mouse embryonic region Mus mu

est

B

N

MI

1.5

0.11

MI

1.6

0.16

NC

0

0

AA168363

“ms30f07.r1 Stratagene mouse skin (#937313) Mus muscu

est

A

N

I

*

1.8

0.11

I

*

1.8

0.13

NC

0

0

D87117

“House mouse; Musculus domesticus brain mRNA for SAF

gene

C N

I

*

˜1.7

0.11

I

*

˜1.8

0.13

NC

0

0

M25149

“Mouse Tum-P91A antigene gene, complete cds”

gene

D

N

I

1.4

0.11

I

1.5

0.13

NC

0

0

M85153

“M. musculus alpha-1,3-galactosyltransferase mRNA, comp

gene

D

N

I

*

1.7

0.11

I

*

1.7

0.1

NC

0

0

RNL+/+-IFN/EMCV

M63245

“Mus musculus amino levulinate synthase (ALAS-H) mRNA

gene

B

N

MI

1.5

0.11

I

1.4

0.08

NC

0

0

AA073769

mm96d12.r1 Stratagene mouse heart (#937316) Mus musc

est

C

N

I

1.6

0.11

MI

1.5

0.06

NC

0

0

M30127

“Mouse MHC class 1 tum- transplantation antigene mRNA P

gene

D

N

I

1.5

0.11

I

1.4

0.06

NC

0

0

L36244

“Mus musculus metalioproteinase matrilysin mRNA, compl

gene

B

N

MI

*

˜1.6

0.11

NC

*

0

0

NC

*

0

0

M60559

“Mus musculus Swiss Webster beta-B2 crystallin mRNA, c

gene

C

N

MD

*

1.8

0.11

NC

*

0

0

NC

*

0

0

W59540

est

A

Y

I

*

˜1.9

0.11

I

*

0

0

NC

0

0

L21973

“Mus musculus F2F1 mRNA, complete cds”

gene

A

N

I

*

1.7

0.11

NC

*

0

0

MD

1.2

0

W90864

mf79d08.r1 Soares mouse embryo NbME13.5 14.5 Mus m

est

B

N

I

*

1.6

0.11

NC

*

0

0

D

1.4

0.1

W35899

mc53h11.r1 Soares mouse embryo NbME13.5 14.5 Mus m

est

D

N

I

*

˜1.7

0.11

NC

*

0

0

D

2.1

0.2

U44940

“Mus musculus quaking type I (QKI) mRNA, complete cds”

gene

B

N

I

*

˜1.6

0.1

I

*

˜2.7

0.44

MI

1.7

0.1

AA137902

mq01b11.r1.Soares 2NbMT Mus musculus cDNA clone 5

est

D

N

I

*

˜1.7

0.1

I

*

˜2.8

0.43

NC

0

0

X81464

M. musculus mRNA for translin

gene

B

N

I

1.6

0.1

I

2.1

0.27

NC

0

0

W64785

“md 89 d11.r1 Soares mouse embryo NbME13.5.14.5 Mus m

est

D

N

I

*

˜1.7

0.1

I

*

˜2.2

0.26

NC

0

0

AA119121

mp56h01.r1 Soares 2NbMT Mus musculus cDNA clone 57

est

B

N

I

1.6

0.1

I

2

0.25

NC

0

0

AA154444

mq47d04.r1 Soares 2NbMT Mus musculus cDNA clone 5818

est

B

N

I

1.6

0.1

MI

1.9

0.23

NC

0

0

AA002883

“mg41d10.r1 Soares mouse embryo NbME13.5 14.5 Mus m

est

D

N

I

*

˜1.6

0.1

I

*

˜2.1

0.22

NC

0

0

W12383

ma67c12.r1 Soares mouse p3NMF19.5 Mus musculus cD

est

D

N

I

*

1.7

0.1

I

*

1.8

0.13

NC

0

0

M27960

“Mouse interleukin-4 receptor (secreted form) mRNA, com

gene

D

N

I

*

1.6

0.1

I

*

1.7

0.12

NC

0

0

W13875

“mb36g03.r1 Soares mouse p3NMF19.5 Mus musculus cDN

est

C

N

MI

1.2

0.1

I

1.3

0.11

NC

0

0

AA060106

mj71g09.r1 Soares mouse p3NMF19.5 Mus musculus cD

est

D

N

I

*

1.8

0.1

I

*

1.7

0.08

NC

0

0

U04299

“Mus musculus BALB/c mannosyl-oligosaccharide alpha-1,

gene

B

N

I

1.6

0.1

MI

1.5

0.07

NC

0

0

U48804

“Mus musculus Zn-finger protein Pw1 gene, complete cds

gene

C

N

I

*

˜1.6

0.1

I

*

˜1.5

0.06

NC

0

0

W98100

me73h07.r1 Soares mouse embryo NbME13.5 14.5 Mus m

est

A

N

I

*

˜1.7

0.1

I

*

˜1.4

0.05

NC

0

0

M24119

“Mouse glucocerebrosidase mRNA, complete cds”

gene

D

N

I

1.5

0.1

I

1.2

0.03

NC

0

0

L21674

“Mouse Eps8 mRNA sequence, complete cds”

gene

A

N

I

*

˜1.8

0.1

I

*

˜1.2

0.02

D

1.4

0.1

U04672

“Mus musculus type I receptor BRK-1 mRNA, complete cd

gene

C

N I

*

˜1.7

0.1

I

*

˜1.1

0.01

NC

*

0

0

M64086

“Mouse spl2 proteinase inhibitor (sp12/eb4) mRNA, comp

gene

A

N

MI

*

1.6

0.1

I

*

0

0

NC

*

0

0

AA015076

mh15f10.r1 Soares mouse placenta ANbMP13.5 14.5 Mus m

est

A

N

I

*

1.5

0.1

NC

*

0

0

NC

0

0

W55789

est

A

Y

I

1.5

0.1

NC

0

0

NC

0

0

U24700

“Mus musculus protein tyrosine phosphatase (mbptp1b) n

gene

A

N

I

1.6

0.1

NC

0

0

MC

1.4

0.1

W83523

mf29g05.r1 Soares mouse embryo NbME13.5 14.5 Mus m

est

B

N

I

*

1.8

0.1

NC

*

0

0

NC

0

0

U27340

“Mus musculus sulfated glycoprotein (Sgp1) mRNA, comp

gene

B

N

I

1.3

0.1

NC

0

0

D

1.6

0.3

X61147

M. musculus mRNA for iron responsive element binding pro

gene

B

N

I

1.6

0.1

NC

0

0

D

1.4

0.1

X56690

Mouse mRNA for modifier 1 protein

gene

B

N

I

*

1.7

0.1

NC

*

0

0

NC

0

0

U40930

“Mus musculus oxidative stress-induced protein mRNA, co

gene

C

N

I

1.3

0.1

NC

0

0

D

1.3

0.1

W85446

mf45d10.r1 Soares mouse embryo NbME13.5 14.5 Mus m

est

C

N

MI

1.5

0.1

NC

0

0

NC

0

0

AA123389

mq73b09.r1 Stratagene.mouse melanoma (#937312) Mus

est

C

N

I

*

˜1.7

0.1

*

0

0

NC

0

0

D82019

“Mouse gene for basigin, complete cds (exon1-7)”

gene

D

N

MI

1.3

0.1

NC

0

0

NC

0

0

X97281

M. musculus mRNA for K+ chanel beta subunit

gene

C

N

I

*

˜1.7

0.09

I

*

˜2.4

0.26

NC

0

0

Z67746

“M. musculus mRNA for phosphatase 2A catalytic subunit,

gene

B

N

MI

1.5

0.09

I

1.8

0.2

NC

0

0

J00423

“Mouse hypoxanthine phosphoribosyltransferase (hprt) mf

gene

B

N I

1.4

0.09

I

1.5

0.18

NC

0

0

W98152

mg13g01.r1 Soares mouse embryo NbME13.5 14.5 Mus mu

est

A

N

I

*

˜1.7

0.09

*

˜1.9

0.16

NC

0

0

U13053

“Mus muscuus Ras-like protein (kir) mRNA, compete cds”

gene

A

N

I

*

˜1.7

0.09

MI

*

˜1.8

0.12

NC

0

0

X95403

M. musculus mRNA for GTP-binding protein

gene

C

N

I

1.4

0.09

I

1.5

0.11

NC

0

0

AA117128

mn05f10.r1 B

eddington mouse embryonic region Mus musc

est

C

N

I

*

˜1.6

0.09

*

˜1.7

0.11

NC

0

0

X80685

M. musculus gMCK2-beta gene

gene

B

N I

1.3

0.09

MI

1.2

0.06

NC

0

0

AA000961

mg38f01.r1 Soares mouse embryo NbME13.5 14.5 Mus m

est

D

N

I

1.5

0.09

I

1.4

0.06

NC

0

L01776

“Mus musculus neuronal dihydropyridine-sensitive L-type

gene

D

N

I

*

˜1.7

0.09

I

*

˜1.5

0.06

NC

0

0

X70842

M. musculus Flk-1 mRNA

gene

B

N

MI

*

˜1.6

0.09

I

*

1.4

0.04

NC

0

0

U21103

“Mus musculus mammary gland factor (Stat5a) mRNA, co

gene

A

N

I

*

˜1.5

0.09

I

*

˜1.2

0.02

NC

0

0

AA050055

mj17f01.r1 Soares mouse embryo NbME13.5 14.5 Mus m

est

A

N

MI

1.4

0.09

NC

0

0

NC

0

0

W54339

md05f06.r1 Soares mouse embryo NbME13.5 14.5 Mus mu

est

A

N

I

1.6

0.09

NC

0

0

D

1.3

0

L04302

“Mouse thrombospondin 3 (THB

SP3) mRNA, complete cd

gene

A

N

I

*

1.7

0.09

NC

*

0

0

MD

3

0.5

U09874

“Mus musculus SKD3 mRNA, complete cds”

gene

A

N

MI

1.5

0.09

NC

0

0

NC

0

0

U12147

“Mus musculus laminin-2 alpha2 chain mRNA, complete c

gene

A

N

I

1.7

0.09

NC

0

0 NC

0

0

AA110896

mp62a09.r1 Soares 2NbMT Mus musculus cDNA clone 5737

est

A

N

I

1.3

0.09

NC

0

0

D

1.4

0.2

X61432

M. musculus mRNA for calmodulin

gene

A

N

I

1.3

0.09

NC

0

0

D

1.1

0

U17297

“Mus musculus integral membrane phosphoprotein band

gene

A

N

I

*

1.5

0.09

NC

*

0

0

NC

0

0

U27315

“Mus musculus adenine nucleotide translocase-1 (Ant1) m

gene

C

N

MI

1.3

0.09

NC

0

0

NC

0

0

D49730

“Mouse mRNA for V1a agrinine vasopression receptor, co

gene

C

N

MI

*

1.7

0.09

NC

*

0

0

NC

0

0

M21828

“Mus growth-arrest-specific (gas2) protein mRNA, com

gene

D

N

I

1.7

0.09

NC

0

0

NC

0

0

M38337

“Mouse milk fat globule membrane protein E8 mRNA, com

gene

D

N

I

1.3

0.09

MI

1

0

NC

0

0

V00836

Mouse mRNA encoding nerve growth factor (NGF)

gene

D

N

I

*

˜1.6

0.08

I

*

˜3.4

0.67

I

2.1

0.4

M38381

“Mouse serine threonine tyrosine kinase (STY) mRNA, com

gene

A

N

I

*

˜1.5

0.08

I

*

˜2.0

0.2

NC

0

0

M23529

“Mus musculus complement receptor (CRY) mRNA, comp

gene

A

N

I

1.4

0.08

I

1.7

0.19

NC

0

0

M17327

“Mouse endogeneous murine leukemia virus modified polyt

gene

D

N

MI

1.5

0.08

I

1.7

0.18

NC

0

0

W33728

mc55h05.r1 Soares mouse embryo NbME13.5 14.5 Mus mus

est

D

N

I

1.3

0.08

I

1.5

0.16

NC

0

0

W87078

mf56g03.r1 Soares mouse embryo NbME13.5 14.5 Mus mu

est

D

N

I

*

1.6

0.08

I

*

1.9

0.15

NC

0

0

AA023107

mh66a12.r1 Soares mouse placenta 4NbMP13.5 14.5 Mus

est

B

N

I

*

1.6

0.08

I

*

1.9

0.14

NC

0

0

Z36270

M. musculus mRNA for GC Binding Protein

gene

B

N

I

1.6

0.08

I

1.9

0.14

NC

0

0

U42190

“Mus musculus GJT-mismatch binding protein (Gtmbp) mP

gene

C

N

MI

*

˜1.6

0.08

I

*

˜1.9

0.14

NC

0

0

M63903

“Mus musculus B

/HLH/Z protein (Myn) RNA, complete c

gene

A

N

I

1.4

0.08

I

1.5

0.12

NC

0

0

AA109831

m198e04.r1 Stratagene mouse kidney (#9.37315) Mus musc

est

C

N

MI

*

˜1.6

0.08

I

*

˜1.7

0.1

NC

0

0

W97919

mg4c10.r1 Soares mouse embryo NbME13.5 14.5 Mus

est

A

N

I

*

˜1.5

0.08

I

*

˜1.5

0.09

NC

0

0

X76850

M. musculus mRNA for MAP kinase-activated protein kinase

gene

B

N

I

1.5

0.08

I

1.5

0.09

NC

0

0

AA137432

mq81d03.r1 Stratagene mouse melanoma (#937312) Mus

est

D

N

I

*

˜1.5

0.08

I

*

˜1.5

0.09

NC

0

0

W13304

mb17c09.r1 Soares mouse p3NMF19.5 Mus musculus cD

est

D N

I

1.5

0.08

I

1.4

0.06

NC

0

0

AA000102

mg31a08.r1 Soares mouse embryo NbME13.5 14.5 Mus

est

D

N

I

1.6

0.08

I

1.4

0.06

NC

0

0

L35034

“Mus musculus ribose 5-phosphate isomerase (RPI) mRNA

gene

A

N

I

*

˜1.7

0.08

I

*

˜1.4

0.04

NC

0

0

L05670

“Mus musculus alpha-clustrin and beta-clustrin mRNA, com

gene

A

N

I

1.5

0.08

I

1.3

0.04

NC

0

0

X63039

M. musculus RSP-1 mRNA for p33 protein

gene

C

N

I

1.4

0.08

I

1.2

0.04

NC

0

0

U20892

“Mus musculus glycinamide ribonucleotide synthetase an

gene

C

N

MI

1.4

0.08

MI

1.3

0.04

NC

0

0

AA105716

“mm66f07.r1 Stratagene mouse macrophage (#937306) M

est

C

N

MD

*

˜1.5

0.08

NC

*

0

0

NC

0

0

AA137871

mq75d01.r1 Stratagene mouse melanoma (#937312) Mus

est

C

N

I

*

˜1.5

0.08

NC

*

0

0

NC

0

0

AA044561

“mj12g04.r1 Soares mouse embryo NbME13.5 14.5 Mus mus

est

A

N

I

1.3

0.08

NC

0

0

D

1.7

0.5

U13837

“Mus musculus vacuolar adenosine triphosphatase subuni

gene

B

N

I

*

1.7

0.08

NC

*

0

0

MD

1.5

0.1

U51167

“Mus musculus isocitrate dehydrogenease mRNA, complet

gene

B

N

I

1.3

0.08

NC

0

0

NC

0

0

570056

“zeta-crystallin [Mus musculus=mice, liver, mRNA, 2025

gene

B

N

I

1.5

0.08

NC

0

0

NC

0

0

X65582

M. musculus mRNA for alpha-2 collagen VI

gene

B

N

I

1.3

0.08

NC

0

0

D

1.3

0.2

Z31555

M. musculus (129 Sv) bcte mRNA for CCT (chaperonin co

gene

B

N

MI

1.2

0.08

NC

0

0

NC

0

0

M33934

“Mouse IMP dehydrogenease mRNA, complete cds”

gene

C

N

MI

1.3

0.08

NC

0

0

NC

0

0

X63747

M. musculus Zfp-38 mRNA

gene

D

N

I

*

1.6

0.08

NC

*

0

0

NC

0

0

U39192

“Mus musculus heparin-binding epidermal growth factor-III

gene

D

N

I

1.5

0.07

I

4.9

2.04

I

3.2

1.7

X06746

Mouse mRNA for Krox-20 protein contalning zinc fingers

gene

D

N

I

*

1.5

0.07

I

*

3.2

0.94

I

2.1

0.6

AA146248

m188g08.r1 Stratagene mouse melanoma (#937312) Mus

est

B

N

I

*

1.7

0.07 I

*

2.9

0.41 I

1.7

0.1

X82786

M. musculus mRNA for Ki-67

gene

B

N

I

*

˜1.5

0.07

I

*

˜2.4

0.32

I

1.6

0.1

U19617

“Mus musculus Ets-family transcription factor Elf-1 mRNA

gene

C

N

I

*

˜1.6

0.07

I

*

˜2.5

0.32

MI

1.6

0.1

L10244

“Mouse spermidine/spermine N1-acetyltransferase (SSAT)

gene

B

N

I

1.3

0.07

I

1.7

0.28

I

1.3

0.1

W29163

mb96c11.r1 Soares mouse p3NMF19.5 Mus musculus cD

est

D

N

I

1.4

0.07

I

1.8

0.26

I

1.3

0.1

W61610

md82e04.r1 Soares mouse embryo NbME13.5.14.5 Mus m

est

A

N

MI

*

1.5

0.07

I

1.9

0.2

NC

0

0

X55318

Mus musculus Hox-3.2 gene

gene

D

N

I

*

1.7

0.07

I

*

2.2

0.19

MI

1.3

0

L04966

“Mus musculus ras-related protein (rab18) mRNA, comple

gene

D

N

I

*

˜1.6

0.07

I

*

˜1.8

0.13

NC

0

0

W78604

m81g10.r1 Soares mouse embryo NbME13.5 14.5 Mus m

est

A

N

I

*

˜1.6

0.07

I

*

˜1.8

0.11

NC

0

0

U18996

“Mus musculus growth factor receptor binding protein (G

gene

A

N

I

1.6

0.07

I

1.8

0.12

NC

0

0

X89749

M. musculus mRNA for mTGIF protein

gene

C

N

I

1.4

0.07

I

1.6

0.11

NC

0

0

AA111268

mo53b03.r1 Life Tech mouse embryo 10 5dpc 10665Q16 M

est

C

N

MI

*

˜1.6

0.07

I

*

˜1.8

0.1

NC

0

0

AA049237

“mj51a05.r1 Soares mouse embryo NbME13.5 14.5 Mus m

est

B

N

I

1.4

0.07

I

1.5

0.1

NC

0

0

W13646

ma93f05.r1 Soares mouse p3NMF19.5 Mus musculus cD

est

C

N

I

1.2

0.07

I

1.3

0.1

NC

0

0

X99641

M. musculus mRNA for HP1 alpha protein

gene

C

N

I

*

1.6

0.07

I

*

1.7

0.08

NC

0

0

AA028398

“m120b02.r1 Soares mouse p3NMF19.5 Mus musculus cD

est

D

N

I

1.2

0.07

I

1.3

0.08

NC

0

0

AA120290

mn16c06.r1 Beddington mouse embryonic region Mus musc

est

B

N

I

1.6

0.07

I

1.4

0.04

NC

0

0

W51237

est

A

Y

I

1.3

0.07

I

1.2

0.03

NC

0

0

Z48043

M. musculus mRNA for proteinase activated receptor 2

gene

B

N

I

*

˜1.5

0.07

NC

*

0

0

NC

0

0

AA033424

m136b07.r1 Soares mouse embryo NbME13.5 14.5 Mus m

est

A

N

I

1.4

0.07

NC

0

0

NC

0

0

W61804

est

A

Y

MI

*

˜1.4

0.07

MI

*

˜1.0

0

NC

0

0

W62643

md82a07.r1 Soares mouse embryo NbME13.5 14.5 Mus m

est

A

N

I

*

˜1.6

0.07

NC

*

0

0

D

1.4

0.1

AA073679

“mm96e05.r1 Stratagene mouse heart (#037316) Mus musc

est

A

N

I

1.5

0.07

NC

0

0

MC

1.3

0.1

X61800

M. musculus mRNA for C/EBP delta

gene

B

N

MI

1.3

0.07

NC

0

0

NC

0

0

AA067929

mm44b12.r1 Stratagene mouse melanoma (#937312) Mus

est

C

N

I

1.5

0.07

NC

0

0

NC

0

0

U34259

“Mus musculus Golgi 4-transmembrane spanning transport

gene

C

N

MI

1.2

0.07

NC

0

0

NC

0

0

U49385

“Mus musculus CTP synthetase homolog (CTPsH) mRNA,

gene

C

N

I

1.6

0.07

NC

0

0

NC

0

0

D21099

“Mouse mRNA for STK-1 (serine/threonine kinase), compl

gene

C

N

I

*

1.5

0.07

NC

0

0

NC

0

0

W64791

md89fD9.r1 Soares mouse embryo NbME13.5 14.5 Mus m

est

D

N

MI

1.3

0.07

I

1.1

0

NC

0

0

AA14516

ms10c1.r1 Stratagene mouse skin (#937313) Mus muscu

est

D

N

I

1.3

0.06

I

2.3

0.58

I

1.7

0.4

U28016

“Mus musculus parathion hydrolase (phosphotriesterase)-

gene

A

N

I

*

1.6

0.06

I

*

2.7

0.39

NC

0

0

D43643

“Mouse YL-1 mRNA for YL-1 protein (nuclear protein with

gene

C

N

I

*

1.5

0.06

I

*

2.2

0.28

NC

0

0

W54228

mc94b11.r1 Soares mouse embryo NbME13.5 14.5 Mus m

est

D

N

I

1.4

0.06

I

1.9

0.21

NC

0

0

L00993

“Mus musculus autoantigene La (SS-B) mRNA, complete cd

gene

D

N

I

*

˜1.5

0.06

I

*

˜2.0

0.17

NC

0

0

U20371

“Mus musculus homeobox protein (Hoxa11) gene, comple

gene

B

N

I

*

˜1.4

0.06

I

*

˜1.9

0.16

I

1.3

0

Z22703

M. musculus keratinocyte growth factor Fgf-7

est

B

N

I

*

˜1.5

0.06

I

*

˜1.9

0.16

NC

0

0

D63784

“Mouse mRNA for MDA1, complete cds”

gene

A

N

I

*

˜1.4

0.06

I

*

˜1.7

0.14

NC

0

0

M13019

“Mouse thymidylate synthase mRNA, complete cds”

gene

A

N

I

1.3

0.06

I

1.5

0.13

NC

0

0

W85270

mf42d05.r1 Soares mouse embryo NbME13.5 14.5 Mus mu

est

D

N

I

1.3

0.06

I

1.4

0.13

NC

0

0

M21495

“Mouse cytoskeletal gamma-actin mRNA, complete cds”

gene

D

N

I

1.1

0.06

MI

1.2

0.12

NC

0

0

M77831

“Mouse binding protein 13 (Fkbp13)gene exons 1-5, com

gene

D

N

I

1.4

0.06

I

1.5

0.09

NC

0

0

U59463

“Mus musculus ICH-3 mRNA, complete cds”

gene

C

N

I

*

1.5

0.06

I

*

1.5

0.06

NC

0

0

D87661

“House mouse; Musculus domesticus mRNA for 14-3-3 et

gene

C

N

I

1.3

0.06

I

1.3

0.05

NC

0

0

U21489

“Mus musculus long-chain acyl-COA dehydrogenease mRN

gene

D

N

I

1.4

0.06

I

1.4

0.05

NC

0

0

W12720

ma52dD7.r1 Soares mouse p3NMF19.5 Mus musculus cD

est

D

N

I

*

˜1.4

0.06

I

*

˜1.3

0.05

NC

0

0

L15447

“Mouse small nuclear RNA (Rnu1a-1) mRNA, complete cd

gene

D

N

I

1.3

0.06

I

1.2

0.02

NC

0

0

AA163866

ms52d09.r1 Life Tech mouse embryo 13 5dpc 10666014 M

est

B

N

MD

1.4

0.06

D

1.1

0.01

NC

0

0

L00923

“Mouse myosin I mRNA, complete cds”

gene

A

N

I

*

1.6

0.06

NC

*

0

0

NC

0

0

AA059550

mj63e07.r1 Soares mouse p3NMF19.5 Mus musculus cDN,

est

A

N

I

1.6

0.06

NC

0

0

NC

0

0

AA064330

mj67g07.r1 Soares mouse p3NMF19.5 Mus musculus cDN

est

A

N

MI

1.4

0.06

NC

0

0

NC

0

0

U17132

“Mus musculus zinc transporter ZnT-1 (ZnT-1) gene, com

gene

A

N

MI

*

1.5

0.06

MI

*

0

0

NC

0

0

AA117106

mo60a10.r1 Stratagene mouse Tcell 937311 Mus muscul

est

A

N

I

1.2

0.06

NC

0

0

D

1.7

0.4

D10576

Mouse mRNA for ubiquitin activating enzyme E1

gene

B

N

I

1.2

0.06

NC

0

0

NC

0

0

X76505

M. musculus (C57B1/6) Tyro 10 mRNA

gene

B

N

I

1.4

0.06

NC

0

0

NC

0

0

M84145

“Mouse fumarylacetoacetate hydrolase (Fah) mRNA, com

gene

D

N

I

*

1.6

0.06

NC

*

0

0

NC

0

0

W41745

mc63b06.r1 Soares mouse embryo NbME13.5 14.5 Mus m

est

D

N

I

1.5

0.06

NC

*

0

0

NC

0

0

AA124985

mp74d03.r1 Soares 2NbMT Mus musculus cDNA clone 574

est

D

N

I

*

˜1.4

0.06

NC

0

0

NC

0

0

M92088

“Mus musculus type II hair keratin mRNA, 3′ end”

gene

D

N

I

1.5

0.06

NC

0

0

NC

0

0

M31885

“Mouse helix-loop-helix DNA binding protein regulator (Id)

gene

D

N

I

1.3

0.05

I

3.8

2.04

I

2.9

2

J04596

“Mouse platelet-derived growth factor-inducible KC protein

gene

A

N

I

*

˜1.5

0.05

I

*

˜2.8

0.4

NC

0

0

W10459

“ma44f11.r1 Soares mouse p3NMF19.5 Mus musculus cDN

est

C

N

MD

1.2

0.05

D

1.5

0.25

D

1.3

0.1

M63658

“M. musculus G protein beta-subunit mRNA, complete cds

gene

D

N

I

1.4

0.05

I

2

0.24

MI

1.4

0.1

X57337

M. musculus CDNAp14 mRNA

gene

C

N

I

1.1

0.05

D

1.3

0.15

D

1.5

0.4

U39473

“Mus musculus histidyl-mRNA synthetase mRNA, complete

gene

C

N

I

1.4

0.05

I

1.5

0.07

NC

0

0

AA022254

est

B

Y

I

*

1.6

0.05

MI

*

1.6

0.06

NC

0

0

W91222

mf85c05.r1.Soares mouse embryo NbME13.5 14.5 Mus m

est

B

N

I

*

1.4

0.05

I

*

1.4

0.06

NC

0

0

W64294

me03a03.r1 Soares mouse embryo NbME13.5 14.5 Mus

est

A

N

MD

˜1.3

0.05

MC

˜1.3

0.05

NC

*

0

0

AA153540

ms15b04.r Stratagene mouse skin (#937313) Mus muscu

est

D

N

D

˜1.4

0.05

MC

˜1.4

0.05

NC

*

0

0

D14883

“Mouse mRNA for C33/R2/IA4, complete cds”

gene

A

N

I

*

1.5

0.05

I

*

1.3

0.02

NC

0

0

AA036574

“m169e05.r1 Soares mouse embryo NbME13.5 14.5 Mus mu

est

A

N

I

1.4

0.05

I

1.1

0.01

NC

0

0

U46187

“Mus musculus KRAB-containing zinc finger protein mRNA

gene

C

N

MI

*

1.4

0.05

NC

*

0

0

NC

*

0

0

AA114623

mn16d09.r1 Beddington mouse embryonic region Mus mu

est

C

N

I

* ˜1.4

0.05

NC

*

0

0

NC

*

0

0

AA153522

ms61h12.r1 Stratagene mouse embryonic carcinoma (#9

est

D

N

MD

*

˜1.6

0.05

NC

*

0

0

I

*

1.3

0

L11739

“Mus musculus homeobox HOX8.1 (Msx2) gene, exon 2

gene

A

N

I

1.5

0.05

NC

0

0

NC

0

0

U34691

“Mus musculus uroporphyrinogene decarboxylase mRNA, c

gene

A

N

I

1.3

0.05

NC

0

0

NC

0

0

AA002979

mg41c04.r1 Soares mouse embryo NbME13.5 14.5Mus mu

est B

N

I

1.4

0.05

NC

0

0

NC

0

0

AA062342

ml35h10.r1 Stratagene mouse testis (#937308) Mus musc

est B

N

I

*

˜1.4

0.05

NC

*

0

0

D

˜2.4

0.3

Z38015

“M. musculus DMR-N9 gene, exons 4 and 5, and DM-Pk g

gene

B

N

I

1.5

0.05

NC

0

0

D

2

0.2

Y00225

“Murine mRNA for J1 protein, yeast ribosomal protein L3

gene

B

N

MD

1.1

0.05

NC

0

0

NC

0

0

U53455

“Mus musculus chloride ion current inducer protein (CLCI)

gene

C

N

I

1.4

0.05

NC

0

0

NC

0

0

U49350

“Mus musculus CTP synthetase mRNA, complete cds”

gene

C

N

MI

1.4

0.05

NC

0

0

NC

0

0

AA087605

mm88e09.r1 Stratagene mouse embryonic carcinomaRA (

est

C

N

I

1.3

0.05

NC

0

0

NC

0

0

AA098588

mn83h08.r1 Stratagene mouse Tcell 937311 Mus muscul

est

C

N

I

*

˜1.5

0.05

NC

*

0

0

NC

0

0

Y07711

M. musculus mRNA for zyxin

gene

C

N

MI

1.2

0.05

NC

0

0

D

1.2

0.1

L24755

“Mus musculus bone morphogenetic protein (Bmp-1) mR

gene

D

N

I

1.3

0.05

NC

0

0

NC

0

0

W13739

mb32b10.r1 Soares mouse p3NMF19.5 Mus musculus cDN

est

D

N

I

1.6

0.05

NC

0

0 NC

0

0

J05265

“Mouse interferon gamma receptor mRNA, complete cds”

gene

D

N

MI

1.4

0.05

NC

0

0

NC

0

0

W71881

me45h01.r1 Soares mouse embryo NbME13.5 14.5 Mus m

est

D

N

I

*

1.4

0.05

NC

*

0

0

NC

0

0

M81477

“Mouse cytoplasmic phosphotyrosine phosphatase mRNA,

gene

D

N

MI

*

1.4

0.04

I

*

2.4

0.29

I

1.7

0.2

L15429

“Mus musculus L6 antigene mRNA, complete cds”

gene

B

N

MI

1.2

0.04

I

1.5

0.28

I

1.3

0.2

X66295

M. musculus mRNA for C1q C-chain.

gene

B

N

MI

*

˜1.3

0.04

I

*

˜2.2

0.24

NC

*

0

0

M58691

“Mouse growth factor-inducible protein mRNA, complete(

gene

A

N

I

1.3

0.04

I

1.9

0.23

NC

0

0

D38517

“Mouse mRNA for Dhm1 protein, complete cds”

gene

A

N

I

1.4

0.04

I

1.7

0.11

NC

0

0

M27073

“Mus musculus protein phosphatase type 1 (dis2m2) mF

gene

D

N

I

*

˜1.5

0.04

I

*

˜1.9

0.11

NC

0

0

W42216

mc69h11.r1 Soares mouse embryo NbME13.5 14.5 Mus m

est

D

N

I

*

1.3

0.04

I

*

1.6

0.1

NC

0

0

AA146437

mr05a08.r1 Soares mouse 3NbMS Mus musculus cDNA clo

est

B

N

I

*

˜1.3.

0.04

I

*

˜1.4

0.06

NC

0

0

X13752

Murine mRNA for delta-aminolevulinate dehydratase (EC

gene

B

N

I

1.3

0.04

I

1.3

0.05

NC

0

0

M63660

“Mouse G-alpha-13 protein mRNA, complete cds”

gene

D

N

I

*

˜1.3

0.04

I

*

˜1.4

0.05

NC

0

0

M76987

Mouse alpha-globin transcription factor CP2 mRNA sequen

gene

D

N

I

*

˜1.4

0.04

MI

*

1.3

0.02

NC

0

0

M25513

“Mouse rod transducin alpha subunit (Tr-alpha) gene, exo

gene

A

N

MD

*

˜1.4

0.04

NC

*

0

0

NC

*

0

0

W08715

mb51a12.r1 Soares mouse p3NMF19.5 Mus musculus cD

est

B

N

MI

*

˜1.4

0.04

NC

*

0

0

NC

*

0

0

AA067335

mm39e02.r1 Stratagene mouse melanoma (#9.37312) Mu

est

C

N

I

*

˜1.2

0.04

NC

*

0

0

NC

*

0

0

W11011

ma47a11.r1 Soares mouse p3NMF19.5 Mus musculus cD

est

C

N

MI

*

1.4

0.04

MI

*

0

0

NC

*

0

0

AA061225

ml31b12.r1.Soares mouse embryo NbME13.5 14.5 Mus m

est

A

N

MI

1.2

0.04

NC

0

0

MD

1.1

0

AA059517

mj61c11.r1 Soares mouse embryo NbME13.5.14.5 Mus m

est

A

N

MI

1.4

0.04

NC

0

0

D

2.3

0.4

AA008043

mg68e02.r1 Soares mouse embryo NbME13.5 14.5 Mus m

est

A

N

MI

1.2

0.04

NC

0

0

NC

0

0

U25995

“Mus musculus cell death protein (RIP) mRNA, complete c

gene

A

N

I

*

˜1.5

0.04

NC

0

0

D

1.3

0

U29173

“Mus musculus lymphotoxin-beta receptor mRNA, comple

gene

A

N

I

1.3

0.04

NC

0

0

MC

1.5

0.1

D37801

Mouse mRNA for protein tyrosine phosphatase

gene

A

N

MI

1.3

0.04

NC

0

0

MC

1.2

0

L21027

“Mus musculus A10 mRNA, partial cds”

gene

A

N

MI

1.1

0.04

NC

0

0

D

1.3

0.2

U30482

“Mus musculus TR2 (mTR2) mRNA, complete cds”

gene

A

N

I

*

˜1.3

0.04

NC

*

0

0

NC

0

0

AA002437

mg54g06.r1 Soares mouse embryo NbME13.5 14.5 Mus mL

est

B

N

I

1.3

0.04

NC

0

0

NC

0

0

U25652

“Mus musculus collagene type XII alpha-1 precursor (Col12

gene

B

N

I

*

1.4

0.04

NC

*

0

0

NC

0

0

X15830

Murine mRNA for neuroendocrine protein 7B2

gene

B

N

I

*

1.4

0.04

NC

*

0

0

NC

0

0

Z19581

M. musculus siah-2 protein mRNA

gene

C

N

MI

1.3

0.04

NC

0

0

MC

1.4

0.1

J02995

“Mouse.testis-specific c-abl protein mRNA, complete cds”

gene

D

N

I

1.3

0.04

NC

0

0

NC

0

0

W29462

mb99b12.r1 Soares mouse p3NMF19.5 Mus musculus cD

est

D

N

I

*

1.3

0.04

NC

*

0

0

NC

0

0

J05205

“Mouse junD proto-oncogene mRNA, complete cds”

gene

D N

MI

1.2

0.04

NC

0

0

D

1.3

0.2

X57796

Mouse mRNA for 55-kDa tumor necrosis factor receptor

gene

D

N

I

1.2

0.04

NC

0

0

NC

0

0

AA114781

mn14h10.r1 Beddington mouse embryonic region Mus mu

est

C

N

I

*

˜1.3

0.03

I

*

˜2.6

0.35

I

2

0.2

AA170223

ms60f01.r1 Stratagene mouse embryonic carcinoma (#937

est

D

N

I

*

˜1.3

0.03

I

*

˜2.4

0.33

NC

0

0

AA027739

mi14g01.r1 Soares mouse p3NMF19.5 Mus musculus cDNA

est

D

N

I

1.3

0.03

I

2

0.28

I

1.5

0.2

M37759

“Mouse serine 1 ultra high sulfur protein gene, complete (

gene

A

N

MI

1.3

0.03

I

1.8

0.15

NC

0

0

W33550

mc52f06.r1 Soares mouse embryo NbME13.5 14.5 Mus mu

est

D

N

I

1.2

0.03

I

1.4

0.07

NC

0

0

D90173

“Mouse mRNA for NFJ-B protein, clone NFJ-B2”

gene

C

N

I

*

˜1.2

0.03

I

*

˜1.4

0.06

NC

0

0

D12644

“Mouse mRNA for KIF2 protein, complete cds”

gene

B

N

I

*

˜1.3

0.03

I

*

˜1.4

0.05

NC

0

0

AA108956

mp41e04.r1 Barstead MPLRB1 Mus musculus cDNA clone

est

B

N

I

1.2

0.03

I

1.2

0.04

NC

0

0

X58069

Mouse mRNA for Histone H2A.X

gene

D

N

I

1.2

0.03

I

1.2

0.04

NC

0

0

M35662

“Mouse placental lactogene I (PL-I) mRNA, complete cds”

gene

D

N

D

*

˜1.3

0.03

MD

*

˜1.3

0.03

NC

0

0

U72141

“Mus musculus muitiple exostoses 2 protein (EXT2) mRN

gene

C

N

I

1.2

0.03

I

1.2

0.03

NC

0

0

AA142796

mq63e08.r1 Soares 2NbMT Mus musculus cDNA clone 58

est

D

N

I

*

1.3

0.03

I

*

1.3

0.02

NC

0

0

U10903

“Mus musculus zinc finger protein (RP-8) mRNA, complete

gene

A

N

I

1.3

0.03

I

1.1

0.01

NC

0

0

AA105509

mo57b06.r1 Life Tech mouse embryo 8 5dpc 10664019 M

est

C

N

I

*

˜1.3

0.03

MI

*

˜1.1

0.01

NC

0

0

U10871

“Mus musculus MAP kinase mRNA, complete cds”

gene

C

N

I

1.3

0.03

I

1.2

0.01

NC

0

0

W12919

ma89f02.r1 Soares mouse p3NMF19.5 Mus musculus cDN

est

D

N

I

1.2

0.03

I

1.1

0.01

NC

0

0

W77226

me63e01.r1 Soares mouse embryo NbME13.5 14.5 Mus m

est

D

N

I

*

1.4

0.03

I

*

1.2

0.01

NC

0

0

AA166391

ms39b09.r1 Life Tech mouse embryo 13 5dpc 0666014

est

D

N

I

*

˜1.2

0.03

I

*

˜1.0

0

NC

*

0

0

D17630

“Mouse mRNA for interleukin-8 receptor (IL-8R), complet

gene

D

N

MD

*

˜1.2

0.03

NC

*

0

0

NC

*

0

0

AA068780

mm64g04.r1 Stratagene mouse embryonic carcinoma (#937

est

A

N

I

1.2

0.03

NC

0

0

D

1.7

0.3

M74773

“Mus musculus brain beta spectrin (Spnb-2) mRNA, comp

gene

A

N

MI

1.3

0.03

NC

0

0

NC

0

0

W66781

me17c12.r1 Soares mouse embryo NbME13.5 14.5 Mus m

est

A

N

I

1.2

0.03

NC

0

0

D

1.2

0.1

75918

me82f05.r1 Soares mouse embryo NbME13.5 14.5 Mus mu

est

A

N

I

1.3

0.03

NC

0

0

NC

0

0

AA063985

mj31c01.r1 Soares mouse embryo NbME13.5 14.5 Mus m

est

A

N

I

*

˜1.3

0.03

I

*

˜1.0

0

NC

0

0

D49956

“Mouse mRNA for 8-oxo-dGTPase, complete cds”

gene

A

N

I

1.3

0.03

NC

0

0

D

2.6

0.4

D38023

Mouse PIMT mRNA

gene

A

N

I

1.4

0.03

NC

0

0

D

1.6 0.1

U28807

“Mus musculus lymphoid-specific transcription factor NFA

gene

B

N

I

*

˜1.3

0.03

NC

*

0

0

NC

0

0

AA014656

“mg93g08.r1 Soares mouse embryo NbME13.5 14.5 Mus mu

est

B

N

I

*

1.3

0.03

NC

0

0

NC

0

0

U04204

“Mus musculus BALB/c aldose reductase-related protein

gene

B

N

MI

1.3

0.03

NC

0

0

NC

0

0

AA068350

mm55c11.r1 Stratagene mouse embryoic carcinoma (#937

est

B

N

I

*

1.3

0.03

NC

*

0

0

NC

0

0

AA068847

mm64a09.r1 Stratagene mouse embryonic carcinoma (#93

est

C

N

MI

*

1.4

0.03

NC

*

0

0

NC

0

0

AA050733

mj16h08.r1 Soares mouse embryoNbME13.5 14.5 Mus mu

est

D

N

I

*

1.3

0.03

NC

*

0

0

NC

0

0

L33416

“Mouse (clone p85) secreted protein mRNA, complete cds”

gene

D

N

I

1.2

0.03

NC

0

0

NC

0

0

AA041826

mj07d08.r1 Soares mouse embryo NbME13.5 14.5 Mus mu

est

D

N

I

*

˜1.2

0.02

I

*

˜2.3

0.21

MI

1.9

0.2

W18778

mc05e01.r1 Soares mouse p3NMF19.5 Mus musculus cD

est

D

N

I

*

1.2

0.02

I

*

1.8

0.21

I

1.5

0.2

AA023591

mh80b01.r1 Soares mouse placenta 4NbMP13.5 14.5 Mu

est

D

N

I

1.2

0.02

I

1.6

0.17

I

1.4

0.1

L29479

“Mus musculus serine/threonine kinase (sak-a) mRNA, co

gene

C

N

I

*

˜1.2

0.02

I

*

˜1.8

0.12

NC

0

0

L07101

“Mus musculus HMG box protein mRNA, complete cds”

gene

D

N

I

*

˜1.3

0.02

I

*

˜1.9

0.12

I

1.5

0.1

AA125097

p77d04.r1 Soares 2NbMT Mus musculus cDNA clone 57

est

A

N

I

*

˜1.2

0.02

I

*

˜1.7

0.11

NC

0

0

U50734

“Mus musculus maternal transcript Maid (Maid) mRNA, co

gene

B

N

I

*

˜1.3

0.02

MI

*

˜1.6

0.08

NC

0

0

L08266

“Mouse Facc mRNA, complete cds“

gene

D

N

I

*

˜1.2

0.02

MI

*

˜1.6

0.07

NC

0

0

AA108891

m156c09.r1 Stratagene mouse testis (#937308) Mus muscu

est

C

N

I

1.3

0.02

I

1.5

0.06

NC

0

0

W55077

est

A

Y

I

*

˜1.2

0.02

MI

*

˜1.3

0.03

NC

*

0

0

AA117227

mo62h09.r1 Stratagene mouse Tcell 937311 Mus musculu

est

C

N

MI

1.2

0.02

I

1.3

0.03

NC

*

0

0

AA118162

mn12f11.r1 Beddington mouse embryonic region Mus mus

est

D

N

I

1.1

0.02

I

1.2

0.03

NC

0

0

AA154734

mr32c06.r1 Soares mouse 3NbMS Mus musculus cDNA c

est

D

N

I

*

˜1.2

0.02

MI

*

˜1.2

0.02

NC

*

0

0

U07950

“Mus musculus BALB/c GbP-dissociation inhibitor (GDI-1)

gene

C

N

I

1.2

0.02

I

1.2

0.02

NC

0

0

W49039

est

A

Y

MD

*

˜1.2

0.02

NC

*

0

0

NC

*

0

0

W82852

me93c07.r1 Soares mouse embryo NbME13.5 14.5 Mus m

est

A

N

I

*

˜1.2

0.02

NC

*

0

0

MC

*

˜2.4

0.3

W78500

me78h04.r1 Soares mouse embryo NbME13.5 14.5 Mus m

est

A

N

D

*

˜1.1

0.02

NC

*

0

0

NC

*

0

0

AA036546

mi50f02.r1 Soares mouse embryo NbME13.5 14.5 Mus m

est

B

N

I

*

˜1.1

0.02

NC

*

0

0

NC

*

0

0

W81967

me93h03.r1 Soares mouse embryo NbME13.5 14.5. Mus m

est

B

N

I

*

˜1.2

0.02

NC

*

0

0

D

*

2.1

0.2

AA064467

mi49c07.r1 Stratagene mouse testis (#937308) Mus muscul

est

C

N

I

*

˜1.2

0.02

NC

*

0

0

NC

*

0

0

AA065689

mm43d07.r1 Stratagene mouse melanoma (#937312) Mus

est

C

N

MI

*

˜1.2

0.02

NC

*

0

0

NC

*

0

0

M73061

“Mouse macrophage inflammatory protein-1-alpha gene, c

gene

D

N

D

˜1.2

0.02

NC

0

0

I

*

˜1.8

0.1

L19311

“Mouse spermidine synthase mRNA, complete cds”

gene

A

N

MI

1.1

0.02

NC

0

0

NC

0

0

W61805

est

A

Y

I

*

˜1.2

0.02

NC

*

0

0

NC

0

0

U51866

“Mus musculus casein kinase II alpha subunit mRNA, com

gene

A

N

I

*

˜1.1

0.02

NC

*

0

0

NC

0

0

W64759

“md89d07.r1 Soares mouse embryo NbME13.5 14.5 Mus m

est

A

N

I

*

˜1.2.

0.02

NC

*

0

0

NC

0

0

AA060187

m65d07.r1 Soares mouse 3NMF19.5 Mus musculus cDNA

est

B

N

I

1.2

0.02

NC

0

0

D

1.3

0.1

X65026

M. musculus mRNA for GTP-binding protein

gene

C

N

I

1.1

0.02

NC

0

0

NC

0

0

AA170104

ms49a04.r1 Life Tech mouse embryo 13 5dpc 1666014

est

C

N

MI

1.2

0.02

I

1

0

NC

0

0

U68564

“Mus musculus NAD(H)-specific isocitrate dehydrogenease

gene

C

N

MI

1.1

0.02

NC

0

0

NC

0

0

AA034842

mi52f10.r1 Soares mouse embryo NbME13.5 14.5 Mus mu

est

D

N

I

1.2

0.02

NC

0

0

NC

0

0

AA061624

mj90h11.r1 Soares mouse p3NMF19.5 Mus musculus cDNA

est

D

N I

*

˜1.1

0.01

I

*

˜2.8

0.49

I

2.5

0.5

M69293

“Mouse Id2 protein (Id-2) mRNA, 3′ end”

gene

A

N

I

1.2

0.01

I

2.5

0.43

NC

0

0

D00613

Mouse mRNA for matrix Gla protein (MGP)

gene

D

N

MI

1.1

0.01

I

1.3

0.15

I

1.3

0.2

W34891

md62g05.r1 Soares mouse embryo NbME13.5 14.5 Mus m est

D

N

I

*

˜1.1

0.01

I

*

˜1.6

0.11

NC

0

0

M85078

“Mus musculus granulocyte-macrophage colony stimulatir

gene

D

N

I

*

˜1.1

0.01

I

*

˜1.5

0.06

NC

*

0

0

X13664

Mouse mRNA for N-ras protein (exons 1-6 part)

gene

A

N

I

*

˜1.2

0.01

I

*

˜1.6

0.06

NC

0

0

AA142505

mq56h11.r1 Soares 2NbMT Mus musculus cDNA clone 58

est

C

N

I

*

1.2

0.01

MI

1.6

0.06

NC

0

0

AA161905

mn41f03.r1 Beddington mouse embryonic region Mus mus

est

B

N

I

*

˜1.1

0.01

I

˜1.4

0.05

NC

0

0

M59821

“Mouse growth factor-inducible protein (pip92) mRNA, co

gene

A

N

I

1.2

0.01

I

1.3

0.04

NC

0

0

U44795

“Mus musculus coagulation factor VII (fVII) mRNA,compl

gene

B

N

MI

*

1.2

0.01

MI

*

˜1.4

0.03

NC

*

0

0

W33538

“mc52e02.r1 Soares mouse embryo NbME13.5 14.5 Mus est

D

N

D

8

˜1.1

0.01

D

*

˜1.1

0.01

NC

*

0

0

M37335

“Mouse myelin proteolipid protein gene, exon 7, clones la

gene

A

N

D

*

˜1.2

0.01

NC

*

0

0

I

*

2.7

0.4

M89798

“Mouse Wnt-5a mRNA, complete cds”

gene

A

N

I

*

˜1.1

0.01

I

*

˜1.0

0

NC

*

0

0

W59472

md61c06.r1 Soares mouse embryo NbME13.5 14.5 Mus m

est

A

N

MD

˜1.3

0.01

NC

0

0

NC

*

0

0

W98496

mg13e10.r1 Soares mouse embryo NbME13.5 14.5 Mus m

est

A

N

I

*

˜1.1

0.01

I

*

˜1.0

0

NC

*

0

0

L37297

Mus musculus (clone B6) myeloid secondary granule prote

gene

B

N

I

*

˜1.1

0.01

NC

*

0

0

NC

*

0

0

AA041873

mj05c12.r1 Soares mouse embryo NbME13.514.5 Mus mu

est

B

N

MI

*

˜1.1

0.01

NC

*

0

0

NC

*

0

0

U49391

“Mos musculus nucleotide-gated olfactory channel

gene

C

N

D

˜1.1

0.01

NC

0

0

NC

*

0

0

AA169961

ms48c08.r1 Life Tech mouse embryo 13 5dpc 10666014 M

est

D

N

D

˜1.1

0.01

NC

0

0

NC

*

0

0

M96823

“Mouse nucleobindin mRNA, complete cds”

gene

A

N

I

1.1

0.01

NC

0

0

D

1.4

0.1

D31842

“Mouse mRNA for putative protein tyrosine phosphatase

gene

A

N

I

*

˜1.1

0.01

NC

*

0

0

NC

0

0

W85163

mf37c09.r1 Soares mouse embryo NbME13.5 14.5 Mus m

est

A

N

MI

*

˜1.1

0.01

NC

0

0

NC

0

0

U53696

“Mus musculus class II cytokine receptor 4 (CRF2-4) mRN

gene

B

N

I

1.2

0.01

NC

0

0

NC

0

0

X06340

Mouse mRNA for P-cadherin

gene

B

N

MI

*

1.2

0.01

NC

*

0

0

NC

0

0

X63440

M. musculus mRNA for P19-protein tyrosine phosphatase

gene

B

N

I

*

˜1.2

0.01

NC

*

0

0

NC

0

0

L40632

“Mus musculus epithelial ankyrin 3 (7kb isoform) mRNA, c

gene

C

N

MI

*

˜1.1

0.01

NC

*

0

0

NC

0

0

U60593

“Mus musculus cytoplasmic protein Ndr1 (Ndr1) mRNA, c

gene

C

N

I

*

1.1

0.01

NC

0

0

D

2.2

0.5

U29947

“Mus musculus alpha-D-mannosidase (Man2b1) mRNA, co

gene

C

N

I

1.1

0.01

NC

0

0

NC

0

0

U69176

“Mus musculus laminin alpha 4 chain mRNA, complete cds

gene

C

N

I

*

1.1

0.01

NC

*

0

0

NC

0

0

AA122619

mr133d03.r1 Beddington mouse embryonic region Mus mu

est

C

N

I

*

˜1.0

0.01

I

*

˜1.0

0

NC

0

0

AA168061

ms29c05.r1 Stratagene mouse skin (#937313) Mus musc

est

D

N

I

1.1

0.01

I

1

0

NC

0

0

AA170018

“ms58h12.r1 Life Tech mouse embryo 13 5dpc 10666014

est

D

N

MI

1.1

0.01

NC

0

0

NC

0

0

AA108827

mp36b01.r1 Barstead MPLRB1 Mus musculus cDNA clone

est

D

N

I

1.1

0.01

NC

0

0

NC

0

0

AA050218

mj17909.r1 Soares mouse embryo NbME13.5 14.5 Mus m

est

D

N

MI

1.1

0.01

NC

0

0

NC

0

0

W50138

est

A

Y

NC

0

0

MI

20

16.94

NC

0

0

M29015

“Mouse ribosomal protein L7 (rpL7) gene, complete cds”

gene

A

N

NC

0

0

I

4.2

2.57

I

2.1

0.9

W51486

est

A

Y

NC

*

0

0

MI

*

˜6.5

2.46

NC

*

0

0

X63099

M. musculus mRNA for connexin31

gene

B

N

NC

*

0

0

I

*

6.2

2.23

I

1.9

0.3

M13522

Murine serum amyloid A-2 (SAA-2) gene

gene

A

N

NC

*

0

0

D

*

˜4.5

1.77

NC

*

0

0

Z29532

M. musculus mRNA for follistatin

gene

B

N

NC

*

0

0

I

*

5.4

1.71

I

3

0.9

U02298

“Mus musculus NIH 3T3 chemokine rantes (Scya5) gene,

gene

B

N

NC

*

0

0

I

*

4.8

1.63

I

4.9

2.2

W41622

mc47a10.r1 Soares mouse p3NMF19.5 Mus musculus

cDN

est

D

N

NC

0

0

I

3.2

1.3

I

2.7

1.5

V00835

Mouse gene for Metaliothionein-1 (three exons)

gene

D

N

NC

0

0

D

3.2 1.16

D

3.7

2.7

W12946

ma89h10.r1 Soares mouse p3NMF19.5 Mus musculus cDN

est

D

N

NC

0

0

MI

3.6

1.08

NC

0

0

D30782

“Mouse mRNA for epiregulin, complete cds”

gene

B

N

I

*

˜1.0

0

I

*

˜4.0

1.01

I

*

5.4

1.7

M83219

“Mus musculus intracellular calcium-binding protein (MRP-

gene

C

N

NC

0

0

D

3.1

0.97

NC

0

0

D78135

“Mouse mRNA for glycine-rich RNA binding protein CIRP, c

gene

A

N

NC

*

0

0

I

*

˜4.1

0.95

NC

0

0

L28117

Mouse NF-kappa-B (p105) mRNA

gene

C

N

NC

*

0

0

I

*

˜4.2

0.94

I

1.5

0.1

AA119959

mp87b08.r1 Soares 2NbMT Mus musculus cDNA clone 57

est

C

N

NC

0

0

MI

2.8

0.79

NC

0

0

M60523

“Mouse helix-loop-helix protein (Id related) mRNA, comple

gene

D

N

NC

0

0

I

2.1

0 77

I

2.6

2.2

D10727

“Mouse mRNA for NDPP-1 protein, complete cds”

gene

D

N

NC

*

0

0

I

*

˜3.4

0.67

NC

0

0

W75403

me52t11.r1 Soares mouse embryo N bME13.5 14.5 Mus m

est

A

N

NC

0

0

I

1.8

0.66

I

1.2

0.1

W41883

“mc64g08.r1 Soares mouse embryo NbME13.5 14.5 Mus

est

A

N

NC

0

0

I

1.6

0.65

I

1.5

0.6

U79523

“Mus musculus peptidylglycine alpha-amidating monooxyg

gene

C

N

NC

*

0

0

I

*

3

0.64

NC

*

0

0

J03783

“Mouse interleukin 6 mRNA, complete cds”

gene

D

N

NC

*

0

0

I

*

˜3.2

0.62

I

*

6.6

2.5

W82958

mf08d08.r1 Soares mouse p3NME19.5 Mus musculus cDN

est

A

N

NC

*

0

0

I

*

3.4

0.61

NC

0

0

AA424453

mp96a02.r1 Soares 2NbMT Mus musculus cDNA clone 577

est

C

N

NC

*

0

0

I

*

3

0.58

MI

*

1.3

0.1

AA144240

“mr78c07.r1 Stratagene mouse heart (#937316) Mus mu

est

D

N

NC

*

0

0

I

*

3.1

0.57

MI

*

1.9

0.3

U34245

“Mus musculus fos-related antigen-1 (Fra-1) mRNA, comp

gene

C

N

NC

*

0

0

I

*

2.7

0.56

MI

1.3

0.1

AA060840

mj80d05.r1 Soares mouse p3NMF19.5 Mus musculus cDNA

est

B

N

NC

*

0

0

D

*

3.1

0.54

NC

*

0

0

W13693

ma94g01.r1 Soares mouse p3NMF19.5 Mus musculus cDN

est

D

N

NC

*

0

0

I

*

3.3

0 54

I

2.2

0.4

U63386

“Mus musculus nuclear transcriptional repressor Mph1 mR

gene

C

N

NC

*

0

0

I

*

3.2

0.53

NC

0

0

X16995

Mouse N10 gene for a nuclear hormonal binding receptor

gene

A

N

NC

*

0

0

I

*

2.5

0.48

I

1.7

0.2

W83337

mf25h11.r1 Soares mouse embryo NbME13.5 14.5 Mus mus

est

C

N

NC

0

0

D

1.6

0.48

D

1.2

0.1

U39066

“Murine MAP kinase kinase 6c mRNA, complete cds”

gene

C

N

NC

*

0

0

MI

*

2.9

0.46

I

1.7

0.1

W89900

mf77h05.r1 Soares mouse embryo NbME13.5 14.5 Mus mus

est

A

N

NC

0

0

D

2

0.43

D

1.4

0.1

AA071689

est

A

T

NC

0

0

D

2

0.41

NC

0

0

AA068364

mm53c08.r1 Stratagene mouse embryonic carcinoma (#937

est

C

N

NC

0

0

D

2

0.41

NC

0

0

L43326

“Mus musculus kinectin (CG-1) mRNA, complete cds”

gene

C

N

NC

*

0

0

I

*

˜2.9

0.4

I

*

2.1

0.2

AA071792

mm72a03.r1 Stratagene mouse macrophage (#937306) Mu

est

C

N

NC

*

0

0

I

*

2.8

0.4

NC

0

0

W98609

“mg14h05.r1 Soares mouse embryo NbME13.5 14.5 Mus

est

B

N

NC

*

0

0

D

*

˜2.6

0.39

D

*

2.1

0.2

U50378

“Mus musculus DNA repair enzyme (Ku 70) gene, exon 1

gene

D

N

NC

*

0

0

I

*

˜2.7

0.38

NC

0

0

AA028701

mi12g10.r1 Soares mouse p3NMF19.5 Mus musculus cDN

est

B

N

NC

0

0

MI

1.9

0.37

NC

0

0

U72881

“Mus musculus RGS-r protein mRNA, complete cds”

gene

C

N

NC

*

0

0

I

*

˜2.0

0.37

I

*

˜3.7

1.5

W46019

mc77h09.r1 Soares mouse embryo NbME13.5 14.5 Mus m

est

C

N

NC

0

0

D

2.1

0.36

NC

*

0

0

X73359

M. musculus mAES-1 mRNA

gene

A

N

NC

0

0

MD

1.7

0.36

D

1.4

0.2

J03023

“Murine macrophage gene, encoding bmk (B cell/myeloid

gene

D

N

NC

*

0

0

I

*

˜2.6

0.35

MI

*

1.8

0.2

W14352

mb33h03.r1 Soares mouse p3NMF19.5 Mus musculus cD

est

D

N

NC

*

0

0

MI

*

2.7

0.35

NC

*

0

0

AA016431

mh38h02.r1 Soares mouse placenta 4NbMP13.5 1.4.5 Mu

est

B

N

NC

0

0

D

1.7

0.34

D

1.4

0.1

L38971

“Mus musculus (E25) mRNA, complete cds”

gene

C

N

NC

0

0

D

1.9

0.34

D

1.7

0.3

U54803

“Mus musculus cysteine protease (Lice) gene, exons 3-7,

gene

C

N

NC

0

0

I

2.4

0.34

I

2.6

0.6

AA152695

“ms12a04.r1 Stratagene mouse skin (#937313) Mus muscu

est

D

N

NC

*

0

0

MI

*

˜2.4

0.32

MI

*

3

0.6

W09323

ma06h08.r1 Soares mouse p3NMF19.5 Mus musculus cD

est

D

N

NC

*

0

0

MD

*

˜2.3

0.32

NC

*

0

0

X64550

M. musculus mNRA RHAMM

gene

C

N

NC

*

0

0

I

*

2.5

0.31

MI

1.8

0.2

M31419

“Mouse 204 interferon-activatable protein mRNA, comple

gene

D

N

NC

*

0

0

I

*

˜2.5

0.31

NC

0

0

D50494

“Mouse mRNA for murine RCK, complete cds”

gene

C

N

NC

0

0

I

1.9

0.3

I

1.8

0.3

U33198

“Mus musculus intranuclear protein mRNA, complete cds”

gene

B

N

NC

0

0

I

˜2.6

0.29

NC

*

0

0

AA034714

“m155h03.r1 Soares mouse embryo NbME13.5 14.5 Mus m

est

A

N

NC

0

0

D

1.3

0.28

D

1.3

0.3

U19118

“Mus musculus transcription factor LRG-21 mRNA, comple

gene

B

N

NC

*

0

0

I

*

˜2.4

0.28

I

1.8

0.2

AA060550

mj69d11.r1 Soares mouse p3NMF19.5 Mus musculus cDN

est

B

N

NC

0

0

D

1.8

0.28

D

1.5

0.2

AA144887

mr11d06.r1 Soares mouse 3NbMS Mus musculus cDNA clon

est

D

N

NC

*

0

0

˜2.5

0.28

NC

0

0

U17259

“Mus musculus p19 mRNA, complete cds”

gene

A

N

NC

0

0

D

2.4

0.27

NC

0

0

U05241

“Mus musculus c-Src kinase (Csk) mRNA, complete cds”

gene

B

N

NC

0

0

D

1.9

0.27

D

1.4

0.1

W50127

est

A

Y

NC

0

0

C

˜1.6

0.26

D

*

˜1.0

0

J03877

“Mouse gamma-renin mRNA; complete cds”

gene

C

N

NC

*

0

0

MD

*

˜2.3

0.26

NC

0

0

U02997

“Mus musculus 129 cryptdin-2 (Defcr2) gene, exon 2 and

gene

A

N

NC

0

0

I

1.7

0.26

I

1.6

0.3

U26176

“Mus musculus somatostatin receptor type 4 (SSTR4) gen

gene

A

N

NC

0

0

MI

2.2

0.26

NC

0

0

V00727

Mouse c-fos oncogene

gene

B

N

I

*

˜1.0

0

I

*

˜2.3

0.26

I

2.4

0.3

U12961

“Mus musculus NAD(P)H:menadione oxidoreductase (Nmo

gene

AN

NC

*

0

0

I

*

˜2.3

0.25

NC

0

0

AA035993

m171c05.r1 Soares mouse embryo NbME13.5 14.5 Mus m

est

D

N

NC

*

0

0

I

*

˜2.2

0.25

I

3

0.6

U38940

“Mus musculus asparagine synthetase mRNA, complete cd

gene

B

N

NC

0

0

MD

1.5

0.24

NC

0

0

W58941

md53e02.r1 Soares mouse embryo NbME13.5 14.5 Mus m

est

A

N

NC

0

0

I

1.6

0.23

NC

0

0

U14135

“Mus musculus CD1 integrin alpha v subunit mRNA, comp

gene

B

N

NC

*

0

0

I

*

˜2.3

0.23

NC

0

0

AA030421

m128f03.r1 Soares mouse embryo NbME13.5 14.5 Mus mu

est

B

N

NC

0

0

I

2.1

0.23

I

1.6

0.1

D16464

Mouse helix-loop-helix factor HES-1 gene

gene

B

N

NC

0

0

I

1.7

0.23

MI

1.4

0.1

X72310

M. musculus mRNA for DRTF-polypeptide-1 (DP-1)

gene

B

N

NC

0

0

I

2

0.23

NC

0

0

AA061016

mj88f06.r1 Soares mouse p3NMF19.5 Mus musculus cDN

est

B

N

NC

*

0

0

˜2.3

0.23

D

3.5

0.7

U34277

“Mus musculus PAF acetythydrotase mRNA, complete cds”

gene

A

N

NC

*

0

0

MI

* ˜2.3

0.22

NC

0

0

X61940

Mouse mRNA for a growth factor-inducible immediate ear

gene

B

N

NC

0

0

MI

1.8

0.22

NC

0

0

AA169951

ms44ct04.r1 Life Tech mouse embryo 13 5dpc, 10666014

est

C

N

NC

0

0

D

1.5

0.22

D

1.3

0.1

J03168

“Mouse interferon regulatory factor-2 mRNA, complete cd

gene

D

N

I

*

˜1.0

0

I

*

˜2.2

0.22

I

2.5

0.4

W47863

mc84h02.r1 Soares mouse embryo NbME13.5 14.5 Mus m

est

A

N

NC

*

0

0

I

*

1.6

0.21

NC

*

0

0

AA120203

mn35d09.r1 Beddington muse embryonic region Mus mus

est

C

N

NC

0

0

D

2.3

0.21

NC

*

0

0

AA138791

mr02c08.r1 Soares mouse 3NbMS Mus musculus cDNA cl

est

D

N

NC

*

0

0

I

*

2.1

0.2

I

*

1.7

0.2

D32167

Mouse zic mRNA for Zic protein, complete cds”

gene

A

N

NC

0

0

I

2.2

0.21

NC

0

0

AA051341

mj40d10.r1 Soares mouse embryo NbME13.5 14.5 Mus m

est

B

N

NC

*

0

0 I

*

˜2.1

0.21

MI

2.1

0.2

U49351

“Mus musculus tysosomal alpha-glucosidase mRNA, compl

gene

C

N

NC

0

0

D

1.6

0.21

D

1.3

0.1

AA008463

“mg83c09.r1 Soares mouse embryo NbME13.5 14.5 Mus

est

B

N

NC

0

0

MD

2

0.2

NC

0

0

U25096

“Mus musculus Kruppel-like factor LKLF mRNA, complete

gene

B

N

NC

*

0

0

MI

*

1.9

0.2

NC

*

0

0

AA061915

mj84a02.r1 Soares mouse p3NMF19.5 Mus musculus cDN

est

C

N

NC

0

0

MD

1.6

0.2

MD

1.5

0.2

AA064021

mj61f02.r1 Soares mouse embryo NbME13.5 14.5 Mus mu

est

C

N

NC

0

0

D

1.4

0.2

D

1.3

0.2

AA066424

mm30c05.r1 Stratagene mouse skin (#937313) Mus mus

est

C

N

I

*

˜1.0

0

I

*

˜1.9

0.19

MI

*

2.5

0.3

AA111592

mo32h08.r1 Life Tech mouse embryo 13 5dpc 10666014 M

est

C

N

NC

*

0

0

MD

*

1.9

0.19

NC

*

0

0

AA153484

“mr84h03.r1 Stratagene mouse heart (#937316) Mus muscl

est

D

N

I

*

˜1.0

0

I

*

˜1.8

0.19

NC

0

0

W41072

mc39b08.r1 Soares mouse p3NMF19.5 Mus musculus cDN

est

D

N

NC

0

0

I

1.8

0.19

NC

0

0

U36757

“Mus musculus thrombin receptor (Cf2r) gene, exon 2 an

gene

A

N

NC

*

0

0

MI

*

2

0.18

NC

*

0

0

U21951

“Mus musculus apolipoprotein B mRNA-editing componen

gene

A

N

I

*

˜1.0

0

I

*

˜1.8

0.18

NC

*

0

0

U59864

“Mus musculus TRAF-interacting protein t-TRAF mRNA, cc

gene

C

N

NC

*

0

0

I

*

˜2.1

0.18

MI

*

2.6

0.4

W16201

mb63d06.r1 Soares mouse p3NMF19.5 Mus musculus cD

est

D

N

NC

0

0

I

2.1

0.18

MI

1.6

0.1

X52886

M. musculus mRNA for cathepsin D

gene

B

N

NC

0

0

D

1.5

0.17

D

1.6

0.3

W12204

ma65c11.r1 Soares mouse p3NMF19.5 Mus musculus cD

est

D

N

NC

*

0

0

I

*

˜2.0

0.17

I

2.1

0.3

D83206

“Mouse mRNA for P24 protein, complete cds”

gene

B

N

NC

*

0

0

MI

*

2.1

0.16

NC

*

0

0

D76440

“Mouse gene necdin, complete cds and promoter sequ

gene

A

N

NC

0

0

D

1.5

0.16

D

1.3

0.1

L22472

“Mouse Bax alpha mRNA, complete cds”

gene

A

N

NC

0

0

D

1.4

0.16

D

1.7

0.6

X77731

M. musculus mRNA for Deoxycytidine kinase

gene

B

N

I

*

˜1.0

0

I

*

˜2.0

0.16

I

2.2

0.2

W89699

mt79b10.r1 Soares mouse embryo NbME13.5 14.5 Mus m

est

B

N

NC

*

0

0

I

*

˜2.0

0.16

NC

0

0

AA087334

“mn95W9.r1 Stratagene mouse lung 937302 Mus musculu

est

C

N

NC

0

0

I

1.9

0.16

NC

0

0

M62418

“Mouse clathrin-associated protein 19 (AP19) mRNA, com

gene

D

N

NC

0

0

I

1.5

0.16

NC

0

0

X15378

Mouse gene for the tight and heavy chains of myeloperoxi

gene

B

N

NC

0

0

D

˜1.9

0.15

MD

*

˜2.2

0.2

AA064355

mt47a02.r1 Stratagene mouse testis (#937308) Mus musc

est

C

N

NC

*

0

0

MI

*

˜1.9

0.15

NC

0

0

W83519

“mf29f08.r1 Soares mouse embryo NbME13.5 14.5 Mus mu

est

A

N

NC

0

0

MD

1.2

0.14

NC

0

0

AA033333

“mi43e02.r1 Soares mouse embryo NbME13.5 14.5 Mus m

est

B

N

NC

0

0

I

1.6

0.14

NC

0

0

W41861

mc64a04.r1 Soares mouse embryo NbME13.5 14.5 Mus m

est

D

N

NC

0

0

I

1.4

0.14

NC

0

0

X67677

M. musculus c-yes mRNA

gene

B

N

NC

0

0

I

˜1.8

0.13

NC

*

0

0

AA098525

“mk18a12.r1 Soares mouse p3NMF19.5 Mus musculus cD

est

C

N

NC

*

0

0

I

*

˜1.9

0.13

I

*

1.9

0.2

U09928

“Mus musculus DBA/2J interferon-inducible RNA-dependen

gene

A

N

NC

*

0

0

I

*

1.6

0.13

NC

0

0

W65616

me12b10.r1 Soares mouse embryo NbME13.5 14.5 Mus mu

est

A

N

NC

0

0

I

1.8

0.13

NC

0

0

W34296

ma99e05.r1 Soares mouse p3NMF19.5 Mus musculus cD

est

B

N

NC

0

0

I

1.3

0.13

NC

0

0

AA024297

mh91a08.r1 Soares mouse placenta 4NbMP13.5 14.5 Mu

est

B

N

NC

*

0

0

I

*

˜1.9

0.13

NC

0

0

AA073986

mm95d03.r1 Stratagene mouse heart (#937316) Mus mus

est

C

N

NC

0

0

I

1.8

0.13

NC

0

0

M11686

“Mouse endo B cytokeratin mRNA, complete cds”

gene

D

N

NC

*

0

0

I

*

˜2.0

0.13

NC

0

0

M21050

“Mouse lysozyme M gene, exon 4”

gene

D

N

NC

0

0

I

1.6

0.13

I

1.6

0.2

M23504

“Mus musculus T cell secreted protein (P600) mRNA, con

gene

A

N

NC

*

0

0

MD

*

˜1.7

0.12

NC

*

0

0

U37351

“Mus musculus Paneth celI enhanced expression PCEE mR

gene

B

N

NC

0

0

MI

1.6

0.12

I

1.1

0

AA087787

“mm86a12.r1 Stratagene mouse embryonic carcinoma RA

est

C

N

NC

0

0

I

1.2

0.12

NC

0

0

D00812

“Mouse mRNA for 30-KDa subunit of replication protein A

gene

D

N

NC

0

0

I

1.7

0.12

NC

0

0

L17076

Mus musculus (clones EcDNA1 and EcDNA4) RNA-binding

gene

D

N

NC

0

0

I

1.6

0.12

NC

0

0

W91095

mf84a04.r1 Soares mouse embryo NbME13.5 14.5 Mus m

est

A

N NC

0

0

MD

1.8

0.11

NC

*

0

0

AA097936

“mn82f02.r1 Stratagene mouse Tcell 937311 Mus muscul

est

C

N

NC

*

0

0

MI

*

1.7

0.11

NC

*

0

0

W99019

mf92g05.r1 Soares mouse embryo NbME13.5 14.5 Mus mu

est

D

N

NC

*

0

0

I

*

˜1.8

0.11

NC

*

0

0

W34743

mc62h02.r1 Soares mouse embryo NbME13.5 14.5 Mus m

est

D

N

NC

*

0

0

MI

*

˜1.7

0.11

NC

*

0

0

W13196

mb33a06.r1 Soares mouse p3NMF19.5 Mus musculus cD

est

B

N

NC

0

0

I

1.7

0.11

NC

0

0

X73523

“M. musculus mRNA for Gal beta1, 3GalNAc alpha213-sialy

gene

B

N

NC

*

0

0

I

* 1.8

0.11

NC

0

0

X71327

M. musculus mRNA for MRE-binding transcription factor

gene

B

N

NC

*

0

0

I

*

1.8

0.11

NC

0

0

U05837 “Mus musculus mouse beta-N-acetylhexosaminidase alph

gene

B

N

NC

0

0

D

1.5

0.11

D

1.9

0.4

U28423

“Mus musculus protein kinase inhibitor p58 mRNA1, comple

gene

C

N

I

*

˜1.0

0

I

*

˜1.5

0.11

NC

0

0

X94444

M. musculus mRNA for preprocathepsin K

gene

C

N

NC

0

0

I

1.6

0.11

NC

0

0

W14370

mb36f09.r1 Soares mouse p3NMF19.5 Mus musculus cD

est

D

N

NC

0

0

I

1.4

0.11

I

1.5

0.3

W54637

est

A

Y

NC

0

0

1.6

0.11

NC

0

0

X74145

M. musculus mRNA for protein kinase.crk4

gene

A

N

NC

0

0

I

1.6

0.1

NC

0

0

X75888

M. musculus mRNA for cyclin E

gene

B

N

NC

0

0

I

1.5

0.1

NC

0

0

X80339

M. musculus Six1 mRNA

gene

C

N

NC

0

0

MI

1.7

0.1

NC

0

0

U60987

“Mus musculus FAD-linked glycerol-3-phosphate dehydro

gene

C

N I

*

˜1.0

0

I

*

˜1.7

0.1

NC

0

0

AA144649

“mr70f07.r1 Sratagene mouse testis (#937308) Mus musc

est

C

N NC

0

0

I

1.6

0.1

MI

1.5

0.1

AA14438

mr69f02.r1 Stratagene mouse testis (#937308) Mus musc

est D

N

NC

*

0

0

MI

*

˜1.6

0.1

NC

0

0

W62420

md99g06.r1 Soares mouse embryo NbME13.5 14.5 Mus m

est

A

N

NC

0

0

MI

1.6

0.09

NC

0

0

W64413

“me03g03.r1 Soares mouse embryo NbME13.5 14.5 Mus m

est A

N NC

0

0

MI

1.6

0.09

NC

0

0

X78683

M. musculus mRNA for B-cell receptor associated protein (

gene

B

N

NC

0

0

I

1.3

0.09

NC

0

0

AA034761

mi44d12.r1 Soares mouse embryo NbME13.5 14.5 Mus m

est

B

N

NC

0

0

I

1.5

0.09

I

1.5

0.1

AA098138

mn84c07.r1 Stratagene mouse Tcell 937311 Mus musculu

est

C N

NC

*

0

0

I

*

1.6

0.09

NC

0

0

U27457

“Mus musculus origin recognition complex protein 2 homol

gene

C

N

NC

*

0

0

I

*

˜1.7

0.09

NC

0

0

AA163902

mr27a01.r1 Soares mouse 3NbMS Mus musculus cDNA cl

est

D

N

NC

0

0

I

1.6

0.09

I

1.5

0.1

M28312

“Mus musculus 3/10 metalloproteinase inhibitor gene, exc

gene

D

N

NC

0

0

I

1.2

0.09

I

1.3

0.2

U11075

“Mus musculus inwardly-rectifying K+ channel protein (mb

gene

A

N

NC

*

0

0

MI

*

˜1.7

0.08

NC

*

0

0

AA020069

est

B

Y

NC

0

0

MD

˜1.6

0.08

NC

*

0

0

AA118151

mn11b10.r1 Beddington mouse embryonic region Mus muscl

est

C

N

I

*

˜1.0

0

I

*

˜1.5

0.08

I

*

2.5

0.3

AA120674

mp75d12.r1 Soares 2NbMT Mus musculus cDNA clone 575

est

D

N I

*

˜1.0

0

I

*

˜1.5

0.08

MI

*

1.8

0.2

W41627

“3mc47c09.r1 Soares mouse p3NMF19.5 Mus musculus cD

est

D

N

NC

*

0

0

I

*

˜1.5

0.08

NC

*

0

0

X87671

“M. musculus mRNA for 3BP-1, an SH3 domain binding pro

gene

B

N

NC

*

0

0

MI

*

˜1.6

0.08

NC

0

0

U56909

“Mus musculus multiple testis transcript (mtt1) mRNA, cc

gene

C

N

NC

*

0

0

I

*

˜1.6

0.08

NC

0

0

AA124052

“mp98f06.r1 Soares 2NbMT Mus musculus cDNA clone 5

est

C

N

NC

0

0

MI

1.7

0.08

NC

0

0

U35456

“Mus musculus glutathione synthetase type A1 mRNA, cc

gene

D

N

NC

*

0

0

I

*

1.6

0.08

MI

1.4

0.1

X72711

“M. musculus mRNA for replication factor C, large subunit”

gene

B

N

NC

*

0

0

I

*

˜1.5

0.07

I

*

˜2.5

0.3

Z46966

M. musculus mRNA for imogene 44

gene

B

N

NC

*

0

0

I

*

˜1.6

0.07

I

*

1.8

0.1

D49473

“House mouse: Musculus domesticus adult tests mRNA f

gene

C

N

NC

*

0

0

MI

*

˜1.7

0.07

NC

*

0

0

M28489

“Mus musculus (clone Mu6a) ribosomal protein S6 kinase

gene

A

N

NC

0

0

I

1.5

0.07

NC

0

0

U00689

“Mus musculus TIA mRNA, complete cds”

gene

A

N

NC

*

0

0

I

*

˜1.6

0.07

NC

0

0

U25051

“Mus musculus phosphatidylethanolamine-N-methyltransfe

gene

A

N

NC

*

0

0

I

*

1.6

0.07

NC

0

0

D00208

“Mouse pEL98 protein mRNA which is enhanced in establ

gene

C

N

NC

0

0

D

1.2

0.07

NC

0

0

AA137737

mq99a08.r1 Soares mouse 3NbMS Mus musculus cDNA clo

est

C

N

NC

0

0

MD

1.6

0.07

D

2.6

0.5

AA109109

“mo31a10.r1 Life Tech mouse embryo 13 5dpc 10666014

est

D

N

NC

0

0

MI

1.4

0.07

NC

0

0

W09664

ma03d05.r1 Soares mouse p3NMF19.5 Mus musculus cDNA

est

D

N

NC

0

0

I

1.6

0.07

NC

0

0

W53731

md15g07.r1 Soares mouse embryo NbME13.5 14.5 Mus mu

est

D

N

I

*

˜1.0

0

I

*

˜1.6

0.07

NC

0

0

AA021788

mh86h07.r1 Soares mouse placenta 4NbMP13.514.5 Mu

est

D

N

NC

*

0

0

I

*

˜1.6

0.07

NC

0

0

W64800

md88f02.r1 Soares mouse embryo NbME13.5 14.5 Mus m

est

A

N

NC

*

0

0

MI

*

1.5

0.06

NC

*

0

0

AA138324

mq96d09.r1 Stratagene mouse heart (#937316) Mus musc

est

B

N

NC

*

0

0

I

*

˜1.5

0.06

NC

*

0

0

AA050934

mg72g12.r1 Soares mouse embryo NbME 13.5 1.45 Mus m

est

B

N

NC

*

0

0

MI

*

1.5

0.06

NC

*

0

0

AA089111

“ml57d05.r1 Stratagene mouse testis (#937308) Mus musc

est

C

N

NC

*

0

0

I

*

˜1.5

0.06

NC

*

0

0

W55814

est

A

Y

NC

*

0

0

I

*

˜1.5

0.06

NC

0

0

W14755

“mb23g09.r1 Soares mouse p3NMF19.5 Mus musculus c

est

B

N

NC

0

0

I

1.2

0.06

NC

0

0

X75285

M. musculus mRNA for fibulin-2

gene

C

N

NC

0

0

MD

1.1

0.06

NC

0

0

D29639

“Mouse embryonal carcinoma cell mRNA for 3-hydroxyacy

gene

C

N

NC

0

0

MI

1.3

0.06

NC

0

0

AA105621

“mm68b06.r1 Stratagene mouse macrophage (#937306) M

est

C

N

NC

0

0

MI

1.2

0.06

NC

0

0

L26320

“Mouse flap endonuclease-1 (FEN-1) mRNA, complete cds

gene

C

N

NC

0

0

I

1.4

0.06

NC

0

0

W13263

mb31d10.r1 Soares mouse p3NMF19.5 Mus musculus cDN

est

D

N

NC

0

0

I

1.4

0.06

NC

0

0

W0059

“mc26b04.r1 Soares mouse p3NMF19.5 Mus musculus cD

est

D

N

NC

*

0

0

I

*

1.5

0.06

I

1.8

0.2

U55057

“Mus musculus receptor protein tyrosine phosphatase-lam

gene

C

N

NC

*

0

0

MI

*

˜1.4

0.05

NC

*

0

0

AA109999

“ml60a02.r1 Stratagene mouse testis (#937308) Mus mus

est

C

N

NC

*

0

0

D

*

1.5

0.05

NC

*

0

0

AA068735

mm59d02.r1 Stratagene mouse embryonic carcinoma (#9

est

D

N

NC

*

0

0

I

*

˜1.4

0.05

MI

*

1.5

0.1

AA034714

“m155h03.r1 Soares mouse embryo NbME13.5 14.5 Mus m

est

A

N

NC

0

0

MD

1.2

0.05

D

1.3

0.2

AA119194

mp63a03.r1 Soares 2NbMT Mus musculus cDNA clone 57

est

B

N

NC

0

0

I

1.5

0.05

I

1.3

0

W42234

mc37a06.r1 Soares mouse p3NMF19.5 Mus musculus cD

est

B

N

NC

0

0

D

1.3

0.05

D

1.4

0.1

X74351

M. musculus mRNA for XPAC Xeroderma Pigmentosum gro

gene

B

N

I

*

˜1.0

0

MI

*

˜1.4

0.05

NC

0

0

AA107514

mp05g07.r1 Life Tech mouse embryo 8 5dpc 10664019

est

C

N

NC

0

0

D

1.2

0.05

D

1.3

0.1

AA086698

mn93b06.r1 Stratagene mouse Tcell 937311 Mus musculu

est

C

N

NC

*

0

0

MI

*

1.5

0.05

NC

0

0

X92411

M. musculus mRNA for MHR23B

gene

C

N

NC

*

0

0

I

*

1.5

0.05

NC

0

0

AA104940

mm67e02.r1 Stratagene mouse macrophage (#937306) Mu

est

C

N

NC

*

0

0

I

*

1.5

0.05

I

1.4

0.1

X96859

M. musculus mRNA for ubiquitin-conjugating enzyme

gene

C

N

NC

0

0

I

1.3. 0.05

NC

0

0

U60330

“Mus musculus Ki antigene mRNA, complete cds”

gene

C

N

NC

0

0

I

1.3

0.05

NC

0

0

AA146282

“mr06e08.r1 Soares mouse 3NbMS Mus musculus cDNA

est

D

N

I

*

˜1.0

0

I

*

˜1.4

0.05

NC

0

0

AA168283

“ms22d05.r1 Stratagene mouse skin (#937313) Mus musc

est D

N

I

*

˜1.0

0

I

*

˜1.4

0.05

NC

0

0

M73741

“Mouse alpha-B2-crystallin gene, complete cds”

gene

D

N

NC

0

0

I

1.3

0.05

NC

0

0

W36586

mb86c07.r1 Soares mouse p3NMF19.5 Mus musculus cDN

est

D

N

NC

0

0

I

1.3

0.05

NC

0

0

U14332

“Mus musculus interleukin 15 (IL15) mRNA, complete cds

gene

A

N

NC

*

0

0

I

*

˜1.3

0.04

I

*

1.8

0.1

AA027669

“1m109g01.r1 Soares mouse p3NMF19.5 Mus musculus cds

est

B

N

MI

*

˜1.0

0

I

*

˜1.3

0.04

NC

*

0

0

L49502

“Mus musculus phosphoprotein (p150TSP) mRNA, comple

gene

B

N

NC

*

0

0

I

*

1.4

0.04

NC

*

0

0

W46752

est

B

Y

NC

*

0

0

I

*

˜1.3

0.04

NC

*

0

0

D86948

“Mouse mRNA for plexin 1, complete cds”

gene

C

N

NC

*

0

0

MI

*

˜1.3

0.04

NC

*

0

0

AA168694

ms35a08.r1 Stratagene mouse heart (#937316) Mus musc

est

D

N

NC

*

0

0

I

*

˜1.4

0.04

NC

*

0

0

AA037945

m177e10.r1 Soares mouse p3NMF19.5 Mus musculus cD

est

D

N

NC

*

0

0

I

*

˜1.3

0.04

NC

*

0

0

AA104477

mm66c11.r1 Stratagene mouse macrophage (#937306) M

est

D

N

I

*

˜1.0

0

I

*

˜1.2

0.04

NC

*

0

0

M23503

“Mus musculus secreted T cell protein (H400, SIS-gamma

gene

D

N

NC

*

0

0

MI

*

˜1.4

0.04

NC

*

0

0

L13103

“Mus musculus MEK kinase mRNA, complete cds”

gene

B

N

NC

*

0

0

I

*

˜1.4

0.04

NC

*

0

0

U22516

“Mus musculus angiogenein precursor (Ang) gene, complet

gene

B

N

NC

*

0

0

I

*

˜1.4

0.04

NC

0

0

AA015354

mh13h07.r1 Soares mouse placenta 4NbMP13.5 14.5 Mus

est

C

N

MI

*

˜1.0

0

MI

*

˜1.3

0.04

NC

0

0

U48737

“Mus musculus serine/threonine-protein kinase PRP4m (Pf

gene

C

N

NC

*

0

0

MI

*

˜1.4

0.04

NC

0

0

D87899

“House mouse; Musculus domesticus male brain mRNA for

gene

C

N

NC

*

0

0

I

*

1.4

0.04

NC

0

0

AA103078

“mo20g01.r1 Life Tech mouse embryo 13 5dpc 10666014

est

C

N

NC

0

0

I

1.4

0.04

I

2.2

0.3

AA117313

mn19c12.r1 Beddington mouse embryonic region Mus musc

est

C

N

NC

*

0

0

I

*

˜1.4

0.04

NC

0

0

AA140026

mq39h04.r1 Barstead MPLRB1 Mus musculus cDNA clone

est

D

N

NC

0

0

I

1.3

0.04

NC

0

0

AA059763

“mj77e11.r1 Soares mouse p3NMF19.5 Mus musculus cD

est

D

N

NC

0

0

I

1.2

0.04

I

1.4

0.2

L11316

“Mouse oncogene (ect2) mRNA, complete cds”

gene

D

N

I

*

˜1.0

0

I

*

˜1.3

0.04

NC

0

0

D26090

“Mouse mRNA for mCDC46 protein, complete cds”

gene

D

N

NC

0

0

I

1.2

0.04

NC

0

0

AA003162

mg51a09.r1 Soares mouse embryo NbME13.5 14.5 Mus m

est

D

N

I

1

0

I

1.3

0.04

NC

0

0

L38677

“Mus musculus alpha 2,8-sialyltransferase (GD3 synthase)

gene

B

N

I

*

˜1.0

0

I

*

˜1.2

0.03

NC

*

0

0

X96793

M. musculus mRNA for placenta growth factor

gene

B

N

NC

*

0

0

I

*

˜1.2

0.03 NC

*

0

0

X63162

M. musculus mRNA for transin-1

gene

B

N

I

*

˜1.0

0

I

*

˜1.2

0.03

NC

*

0

0

U61363

“Mus musculus groucho-related gene 4 protein (Grg4) mR

gene

C

N

NC

*

0 0

I

*

1.4

0.03

NC

*

0

0

U64199

“Mus musculus II-12 receptor beta2 mRNA, complete cds”

gene

C

N

NC

*

0

0

MD

*

˜1.3

0.03

NC

*

0

0

X14029

Mouse MulFN-beta gene for beta-interferon

gene

D

N

NC

*

0

0

I

*

˜1.2

0.03

I

*

˜3.3

0.8

X53953

M. musculus ets-1 mRNA

gene

A

N

NC

*

0

9

I

*

˜1.3

0.03

NC

0

0

U12922

“Mus musculus CD1 geranylgeranyl transferase beta subu

gene

C

N

NC

0

0

I

1.2

0.03

NC

0

0

U58888

“Mus musculus SH3-containing protein SH3P2 mRNA, par

gene

C

N

NC

0

0

Ml

1.1

0.03

NC

0

0

W41974

mc68h11.r1 Soares mouse embryo NbMEt3.5 14.5 Mus

est

D

N

NC

0

0

I

1.3

0.03

MI

1.2

0

X56461

Murine Hox2.2 mRNA for a homeobox protein

gene

D

N

NC

*

0

0

I

*

˜1.3

0.03

NC

0

0

W20901

mb95a12.r1 Soares mouse p3NMF19.5 Mus musculus cD

est

D

N

NC

*

0

0

I

*

˜1.4

0.03

NC

0

0

M33467

Mouse dilute lethal-20J (d-120J) deletion breakpoint fusio

est

A

N

I

*

˜1.0

0

I

*

˜1.3

0.02

NC

*

0

0

D28941

“Mouse mRNA for alpha-2,3-sialyltransferase, complete cc

gene

A

N

NC

*

0

0

I

*

˜1.1

0.02

NC

*

0

0

W89740

mf77a09.r1 Soares mouse embryo NbME13.5 14.5 Mus m

est

A

N

NC

*

0

0

MI

*

˜1.3

0.02

NC

*

0

0

D00622

Mouse mRNA for heparin binding protein 44

gene

B

N

NC

*

0

0

Ml

*

1.2

0.02

NC

*

0

0

L49433

“Mus musculus TNFR2-TRAF signalling complex protein m

gene

B

N

I

*

˜1.0

0

I

*

˜1.1

0.02

NC

*

0

0

U43321

“Mus musculus putative transmembrane receptor (frizzled

gene

B

N

NC

*

0

0

I

*

˜1.2

0.02

NC

*

0

0

AA023087

mh67a10.r1 Soares mouse placenta ANbMp13.5 14.5 Mus m

est

B

N

NC

*

0

0

I

*

1.3

0.02

I

*

1.4

0

X84797

M. musculus mRNA similar to human hematopoeitic specifi

gene/ B

N

NC

*

0

0

I

*

˜1.2

0.02

NC

*

0

0

X75018

M. musculus mRNA for Id4 helix-loop-helix protein

gene

C

N

I

*

˜1.0

0

I

*

˜1.1

0.02

I

*

˜2.0

0.1

U42385

“Mus musculus fibroblast growth fadtor inducible gene 16

gene

C

N

I

*

˜1.0

0

I

*

˜1.1

0.02

MI

*

˜2.1

0.2

AA103507

mo25e04.r1 Life Tech mouse embryo 13 5dpc 10666014 M

est

C

N

NC

*

0

0

MI

*

1.1

0.02

NC

0

0

J03535

“Mouse Ig-related glycoprotein-70 mRNA, complete cds”

gene

D

N

NC

*

0

0

I

*

˜1.2

0.02

I

*

1.7

0.1

J03733

“Mouse ornithing decarboxylase gene, complete cds”

gene

A

N

NC

*

0

0

I

*

1.1

0.02

NC

0

0

AA021664

est

B

Y

NC

*

0

0

I

*

˜1.2

0.02

NC

0

0

AA027404

mi03d01.r1 Soares mouse placenta 4NbMP13.5 14.5 Mus m

est

B

N

NC

0

0

MI

1.2

0.02

NC

0

0

AA068062

ml77b11.r1 Stratagene mouse kidney (#937315) Mus muc

est

C

N

NC

*

0

0

I

*

1.2

0.02

NC

0

0

AA015331

mi61g04.r1 Soares mouse embryo NbMF13.5 1A.5 Mus m

est

C

N

NC

0

0

MI

1.1

0.02

NC

0

0

AA154013

“ms11t03s1 Stratagene mouse skin (#937313) Mus muscul

est

D

N

I

*

˜1.0

0

I

*

˜1.2

0.02

NC

0

0

AA170375

ms60c07.r1 Stratagene mouse embryonic carcinoma (#93

est

D

N

NC

0

0

MI

1.1

0.02

I

1.5

0.4

AA028728

ms16d09.r1 Soares mouse p3NMF19.5 Mus musculus cDN

est

D

N

NC

0

0

I

1.2

0.02

MI

1.3

0.1

M17790

“Mouse SAA4 gene encoding serum amyloid A, exons 3 a

gene

A

N

NC

*

0

0

I

*

˜1.1

0.01

NC

*

0

0

AA007899

“mg65e12.r1 Soares mouse embryo NbME13.5 14.5 Mus mu

est

B

N

NC

*

0

0

MI

*

1.2

0.01

NC

*

0

0

X55573

M. musculus brain-derived neurotrophic factor mRNA

gene

B

N

NC

*

0

0

I

*

˜1.1

0.01

NC

*

0

0

Z22649

M. musculus c-mpl mRNA

gene

B

N

NC

*

0

0

I

*

˜1.1

0.01

NC

*

0

0

AA073278

mm82g03.r1 Stratagene mouse embryonic carcinoma RA

est

C

N

I

*

˜1.0

0

I

*

˜1.1

0.01

NC

*

0

0

AA107515

mp05g08.r1 Life Tech mouse embryo 8 5dpc 10664019 Mu

est

C

N

NC

*

0

0

I

*

˜1.1

0.01

NC

*

0

0

AA120368

mn17d01.r1 Beddington mouse embrybnic region Mus mu

est

C

N

NC

*

0

0

I

*

˜1.1

0.01

NC

*

0

0

X82457

M. musculus es64 mRNA

gene

B

N

NC

0

0

I

1.1

0.01

MI

1.3

0.1

X57277

M. musculus rac1 gene

gene

C

N

NC

0

0

MI

1.1

0.01

NC

0

0

U56773

“Mus musculus pelle-like protein kinase mRNA, complete c

gene

C

N

NC

0

0

MI

1.1

0.01

NC

0

0

U66849

“Mus musculus hereditary haemochromatosis homolog mP

gene

C

N

I

*

˜1.0

0

I

*

˜1.1

0.01

NC

0

0

U30838

Mus musculus voltage dependent anion channel 2 mRNA

gene

C

N

MI

1

0

I

1.1

0.01

NC

0

0

AA162290

ms27c12.r1 Stratagene mouse skin (#937313) Mus muscl

est

D

N

NC

0

0

MI

˜1.2

0.01

NC

0

0

W90837

mf78g07.r1 Soares mouse embryo NbME13.5 14.5 Mus m

est

D

N

NC

0

0

MI

1.1

0.01

I

1.3

0.1

M13963

“Mouse inhibitory G protein of adenylate cyclase, alpha ch

gene

D

N

NC

0

0

I

1.1

0.01

NC

0

0

M57696

“Mouse lyn A protein tyrosine kinase (lynA) mRNA, compl

gene

D

N

NC

*

0

0

I

*

1.2

0.01

NC

0

0

D38417

“Mouse mRNA for arylhydrocarbon receptor, complete cd

gene

D

N

NC

*

0

0

I

*

˜1.1

0.01

I

1.7

0.1

L21768

“Mus musculus eps15 mRNA, complete cds”

gene

D

N

I

*

˜1.0

0

I

*

˜1.1

0.01

NC

0

0

1 - untreated RNL +/30

2 - IFNA - 18 h

3 - IFNA - 18 h + EMCV 6 h

!

TABLE 7
MURINE GENES INDUCED BY IFN-α
Apoptosis	Immune	Growth Regulation
ICH-3 (Caspase-11)	Modulation	P204
PML	ISG-15	PML
MyD88	MIG	GTP binding Proteins
Signaling	CyCAP	LRG-47
IRF-1 & 7	RANTES	GTP2
STAT 1	MCP-5	Miscellaneous
PML	IAP	Thymidylate kinase hom.
G3BP	Antigen Processing	Apolipoprotein D
MyD88	LMP 2 & 7	GARGs
ISGF3-γ	PA 28 α and β
Endoglin	HAM 1
IKB-α	TAP 2
Rpt-1 r

TABLE 8
EMCV-enhancement of gene expression
in interferon-treated cells
TK Homologue               Growth Factor Inducible Prot.
GARGs                      Inhibin β A subunit
G/H synthase               Inhibin β B subunit
Squalene epoxidase         IKB-α
Cell. Retinoic acid BP     EGF-like growth factor
Hyaluronan Synth. Hom.     RANTES
PG2 (decorin)              Epiregulin
IL-11                      IL-6
Pulmonary Surfactant Prot. IFN-β

Claims

1. An array for identifying agents which mimic or inhibit the activity of interferons comprising:a) gene probes that hybridize with from about 50 to about 10,000 interferon-stimulated and interferon-repressed gene transcripts, and b) a substrate to which said gene probes are attached; wherein the array comprises gene probes that hybridize to transcripts of no more than 99 genes whose expression is known not to be stimulated or repressed by interferon treatment, andwherein the array comprises a probe that hybridizes with the transcript of human phospholipid scramblase.

2. The array of claim 1 wherein the gene probes are selected from the group consisting of oligonucleotides, cDNA molecules, and synthetic gene probes comprising nucleobases.

3. The array of claim 1 wherein the array comprises a plurality of the genes listed in Table 2.

4. The array of claim 1 wherein the array comprises a plurality of the genes listed in Table 3.

5. An array for identifying agents which mimic or inhibit the activity of interferons comprising:a) gene probes that hybridize with from about 50 to about 10,000 interferon-stimulated and interferon-repressed gene transcripts, and b) a substrate to which said gene probes are attached; wherein the array comprises gene probes that hybridize to transcripts of no more than 99 genes whose expression is known not to be stimulated or repressed by interferon treatment, andwherein the array comprises a probe that hybridizes with the transcript of human 52 kD SS A-Ro autoantigen.

6. The array of claim 5 wherein the gene probes are selected from the group consisting of oligonucleotides, cDNA molecules, and synthetic gene probes comprising nucleobases.

7. The array of claim 5 wherein the array comprises a plurality of the genes listed in Table 2.

8. The array of claim 5 wherein the array comprises a plurality of the genes listed in Table 3.