This invention relates generally to sampling means and methods and relates, more particularly, to the means and methods for sampling surface array spots having analytes.
In earlier U.S. Pat. No. 6,803,566, having the same assignee as the instant application, a sampling technique is disclosed which involves the sampling of surface array spots having analytes. More specifically, the described sampling technique utilizes a tipped probe and an associated self-aspirating emitter through which a liquid agent, such as a eluting solvent, is delivered to the surface array and through which samples are conducted from the surface array for purposes of analysis. In addition, a positioning system is provided for automatically translating the surface array along X and Y-coordinate axes (i.e. within the plane of the surface array) to alter the position of the surface array relative to the probe. In other words, by shifting the surface array relative to the probe along X and Y coordinate directions, the tip of the probe can be positioned in registry with any spot (i.e. any X-Y coordinate location) along the surface array. Thereafter, the surface array and tip of the probe can be manually moved toward one another (i.e. along the Z-coordinate axis) until a liquid microjunction is presented between the tip of the probe and the surface array, and it is in this probe-to-surface array condition that the corresponding spot on the array is sampled with the probe. The sample is thereafter conducted to appropriate test equipment where the desired analysis of the sample is carried out. The probe used in such a sampling technique is particularly well-suited as an interface for coupling thin-layer chromatography and mass spectrometry. The referenced patent describes the sampling technique as being useful in the field of proteomics in which protein microarrays are analyzed, but other uses can be had.
Heretofore and as suggested above, the spaced relationship between the tip of the probe and surface array (i.e. along the Z-coordinate axis) to effect the initial formation of the liquid microjunction and to thereafter maintain an optimum microjunction thickness during the course of an experiment has required the intervention of an operator. In other words, it is an operator who has been required to manually position the tip of the probe and the surface array adjacent one another for sampling purposes and to make manual adjustments, as necessary, of the probe-to-surface array distance throughout the course of the sampling procedure. Furthermore, the collection of a plurality of samples from different spots or alternative development lanes (e.g. along an X or Y-coordinate path) upon the surface array is likely to involve additional operator-controlled, i.e. manual, adjustment, of the distance between the tip of the probe and the surface array. Consequently and as a result of the necessary involvement of an operator during the control of the probe-to-surface array distance during a sampling technique of the prior art, the precision of this prior art sample-collection technique typically corresponds to the skill of the operator involved.
It would be desirable to provide the aforedescribed sampling technique with a means for automatically controlling the probe-to-surface array distance during the collection of samples from surface array spots or development lanes.
Accordingly, it is an object of the present invention to provide a new and improved system and method for automatically controlling the distance between the sampling probe and the surface of the array to be sampled with the probe which does not require operator intervention during a sample-collecting operation.
Another object of the present invention is to provide such a system and method wherein the probe and surface array are automatically positioned in a desirable spaced relationship for purposes of sampling the surface array with the probe.
Still another object of the present invention is to provide such a system and method wherein the probe-to-surface distance is continually monitored throughout the sampling procedure and adjusted, as necessary, so that the probe-to-surface distance is maintained at an optimal spacing.
Yet another object of the present invention is to provide such a system which is uncomplicated in structure, yet effective in operation.
This invention resides in a sampling system and method for obtaining samples containing an analyte from a surface array.
The system of the invention includes a sampling probe having a tip and which is adapted to sample a surface array for analysis when disposed at a desired spaced target distance from the surface array so that an optimum liquid microjunction is presented between the tip of the sampling probe and the surface array. The system further includes means for moving the sampling probe and the surface array toward and away from one another and means for capturing an image of both the tip of the probe and the surface array and for generating signals which correspond to the captured image. In addition, means are included within the system for receiving the signals which correspond to the captured image and for determining the actual distance between the tip of the probe and the surface array from the captured image. Comparison means then compare the actual distance between the tip of the probe and the surface array to the desired target distance and initiates movement of the surface array and the probe tip toward or away from one another when the difference between the actual distance between the tip of the probe and the surface array and the desired target distance is outside of a predetermined range so that by moving the surface array and the probe tip toward or away from one another, the actual distance approaches the desired target distance.
The method of the invention includes the steps carried out by the system of the invention. In particular, such steps includes the capturing of an image of both the tip of the probe and the surface array and determining the actual distance between the tip of the probe and the surface array from the captured image. The actual distance between the tip of the probe and the surface array is then compared with the desired target distance at which the optimum liquid microjunction is presented between the probe tip and the surface array for sample-collecting purposes, and the surface array and the probe tip are subsequently moved toward or away from one another when the actual distance between the tip of the probe and the surface array and the desired target distance is outside of a predetermined range so that by moving the surface array and the probe tip toward or away from one another, the actual distance approaches the desired target distance.
a is a schematic representation of a theoretical image with which the image analysis utilized during the method of the present invention can be explained;
b is an attending plot of the line average brightness (LAB) along the Z-axis for the theoretical image of
a-4d are examples of actual captured images of the probe tip and the surface array of
a and 5b are views illustrating schematically the path of the tip of the probe relative to the surface array of
a is a view of the word “COPY” appearing on a piece of paper.
b-6d are views of the word “COPY” which have been imaged onto pieces of paper from the image of
Turning now to the drawings in greater detail and considering first
The system 20 includes a sampling probe 24 (and an associated self-aspirating emitter 25) having a pair of concentric (i.e. inner and outer) tubes which terminate at a tip 26 which is positionable adjacent the surface array 22. During a sampling process, a predetermined liquid (e.g. an eluting solvent) is directed from a syringe pump 37 and onto the surface array 22 through the outer tube of the probe 24, and a desired sample is conducted, along with the predetermined liquid, away from the remainder of the surface array 22 through the inner tube of the probe 24 for purposes of analyzing the collected sample. For a more complete description of the sampling probe 24 and the method by which samples are collected thereby for the purpose of subsequent analysis, reference can be had to U.S. Pat. No. 6,803,566, the disclosure of which is incorporated herein by reference and which has the same assignee as the instant application.
With reference to
The support plate 27 is, in turn, supportedly mounted upon the movable support arm 36 of an XYZ stage 28 (
Although a description of the internal components of the XYZ stage 28 is not believed to be necessary, suffice it to say that the X and Y-coordinate position of the support surface 27 (and surface array 22) relative to the probe tip 26 is controlled through the appropriate actuation of, for example, a pair of reversible servomotors (not shown) mounted internally of the XYZ stage 28, while the Z-coordinate position of the support surface 27 (and surface array 22) relative to the probe tip 26 is controlled through the appropriate actuation of, for example, a reversible stepping motor (not shown) mounted internally of the XYZ stage 28. Therefore, by appropriately energizing the X and Y-coordinate servomotors, the array 22 can be positioned so that the tip 26 of the probe 24 can be positioned in registry with any spot within the X-Y coordinate plane of the array 22, and by appropriately energizing the Z-axis stepping motor, the array 22 can be moved toward or away from the probe tip 24.
With reference still to
It is a feature of the system 20 that it includes image analysis means, generally indicated 40, for controlling the spaced distance (i.e. the distance as measured along the indicated Z-coordinate axis) between the tip 26 of the probe 24 and the surface array 22. Within the depicted system 20, the image analysis means 40 includes a light source 42 supported adjacent the probe tip 26 for directing a beam of light toward the tip 26 so that a shadow of the probe tip 26 is cast over the surface of the array 22. In addition, a closed circuit camera 44 is supported to one side of the array 22 for collecting images of the probe tip 26 and the shadow cast upon the array by the probe tip 26 in preparation of and during a sample-collection operation, and a video (e.g. a black and white television) monitor 46 is connected to the camera 44 for receiving and displaying the images collected by the camera 44. The monitor 46 is, in turn, connected to the laptop computer 30 (by way of video capture device 50) for conducting signals to the computer 30 which correspond to the images taken by the camera 44. As will be explained in greater detail herein, it is these collected images which are used to determine the actual, real-time distance between the tip 26 of the probe 24 and the surface array 22.
Furthermore, the system 20 is provided with a webcam 48 having a lens which is directed generally toward the probe 24 and surface array 22 and which is connected to the laptop computer 30 for providing an operator with a wide-angle view of the probe 24 and the surface array 22. The images collected by the webcam 48 are viewable upon a display screen, indicated 52, associated with the laptop computer 30 by an operator to facilitate the initial positioning of the surface array 22 relative to the probe 24 in preparation of a sample-collection operation.
An example of a closed circuit camera suitable for use as the camera 44 is available from Panasonic Matsushita Electric Corporation under the trade designation Panasonic GP-KR222, and the camera 44 is provided with a zoom lens 45, such as is available from Thales Optem Inc. of Fairport, N.Y. under the trade designation Optem 70 XL. An example of a video capture device suitable for use as the video capture device 50 is available under the trade designation Belkin USB VideoBus II from Belkin Corp. of Compton, Calif., and an example of a webcam which is suitable for use as the webcam 48 is available under the trade designation Creative Notebook Webcam from W. Creative Labs Inc., of Milpitas, Calif.
The operation of the system 20 and its image analysis means 40 can be better understood through a description of the system operation wherein through its use of image analysis, the system 20 monitors the real-time measurement of the distance between the probe 24 and the surface array 22 to initiate formation of a liquid microjunction between the tip 26 of the sampling probe 24 and the surface array 22 to be sampled and thereafter initiates adjustments, as needed, to the actual probe-to-surface array distance by way of the laptop computer 30 and the XYZ stage 28 so that the optimum junction distance (as measured along the Z-axis) is maintained throughout a sampling process, even though the surface array 22 might be shifted along the X or Y coordinate axes for purposes of collecting a sample from other spots along the array 22 or from along different lanes across the array 22.
At the outset of a sample-collecting operation performed with the system 20, a desired probe-to-surface array distance which corresponds to the distance at which an optimum microjunction thickness is presented between the probe 24 and the surface array 22 for purposes of collecting a sample therefrom is preprogrammed into the memory 33 of the laptop computer 30. Optimum microjunction thicknesses vary between various materials (e.g. solution compositions) desired to be sampled, and the applicants have determined, empirically, the optimum microjunction thicknesses for a number of various materials desired to be sampled. Such optimum thicknesses may fall, for example, between 20 and 50 μm. By means of appropriate software, which has been developed by applicants and loaded within the computer 30, an operator can identify (from a computer-generated list of possible materials) the material comprising the surface array 22 to be sampled, and the computer 30 will automatically identify the optimum microjunction thickness for that material and the attending probe-to-surface array distance. As will be apparent herein, this pre-programmed attending probe-to-surface array distance provides a target distance at which the probe tip 26 and the surface array 22 are desired to be spaced, and during an image analysis process performed with the system 40, the actual, or real-time, probe-to-surface array distance is compared to the desired target probe-to-surface array distance corresponding to the optimum microjunction thickness for the surface array 22.
In preparation of an image analysis with the system 20, an operator enters appropriate positioning commands into the laptop computer 30 so that the XYZ stage 28 moves the surface array 22 along the Z-axis and toward the probe tip 26 until the surface array 22 is positioned in relatively close proximity to, although spaced from, the tip 26 of the probe 24. During this set-up stage, the relative position between the surface array 22 and the probe tip 26 can be visually monitored by the operator who watches the images obtained through the webcam 48 and displayed upon the laptop display screen 52 so that the array 22 is not brought too close to the probe tip 26. In other words, to reduce the risk that the array 22 is brought so close to the probe tip 26 that the probe-to-surface array distance is smaller than the target distance, the array 22 is not brought any closer to the probe tip 26 during this set-up stage than, for example, about 400 μm.
Once the surface array 22 is brought to within about 400 μm of the probe tip 26 during this set-up stage, the operator enters appropriate commands into the laptop computer 30 through the keyboard 31 thereof so that the XYZ stage 28 begins to move the surface array 22 closer to the probe tip 26 (along the Z-coordinate axis) while a light beam is directed from the light source 42 toward the probe 24 so that the shadow of the probe tip 26 is cast upon the surface array 22. As the array 22 is moved closer to the probe tip 26, continual images of the probe tip 26 and the surface array 22 and, more specifically, the shadow of the probe tip 26 cast thereon are captured, or taken, with the camera 44. Electrical signals corresponding to these captured images are immediately transmitted to the laptop computer 30 where an image analysis is performed upon selected ones of these images. In the interests of the present invention, the phrase “selected ones of the captured images” means the images captured at preselected and regularly-spaced intervals of time (e.g. every one-half second), and the time interval between these selected images for analysis can be preprogrammed into, or selected at, the laptop computer 30.
Along the same lines and from selected ones of the captured images, the laptop computer 30 is able to generate for each image, by way of a suitable program loaded within the computer 30, a plot of the average line brightness (LAB) of each image along the Z-axis. These LAB plots can thereafter be utilized to determine the real-time, or actual, spaced distance between the probe tip 26 and the surface array 22.
By way of example, there is illustrated in
As far as how the system 20 measures the brightness of any pixel in a captured image is concerned, it is noteworthy that image pixels can be comprised of red, green and blue components. The system 20 or, more particularly, the computer 30 identifies the intensity of each of the red, green and blue components and then adds the intensities of these components together to obtain a brightness value for use in the LAB analysis. If it is determined that a particular color of the surface array, such as the color green, disturbs the image analysis, appropriate filter algorithms can be applied within the software to calculate the intensity of a pixel (e.g. adding intensities of only the red and blue components together, but not that of the green, to obtain a brightness value for use in the LAB analysis in the current example) from the resultant image. In this latter case and with the green color removed from the pixels of the image being analyzed, the brightness could be defined as simply the sum of the intensity of the red component of the image and the intensity of the blue component. It also follows that many types of filtering or image manipulation can be performed within the computer 30, as desired, to enhance the image and thereby advantageously affect the results of the image analysis.
The plotted LABs are normalized relative to the brightness and the darkest LAB value in the examined range. It can be seen from the
With reference to
The aforediscussed image data presents two alternatives to automate formation of the liquid microjunction and to maintain the optimum junction thickness. The first alternative is to permit the surface array 22 to approach the probe 24 along the Z-axis until the two peaks which corresponding to the location of the probe tip 26 and the probe shadow E appear in the analyzed image and then to track the merging of the two peaks along the Z-coordinate axis. The calculation of the probe-to-surface distance in this first case would be based upon the separation and width of the two peaks. However, experiments conducted to date indicate that dark spots present upon the surface array 22 could interfere with the detection of the second peak (i.e. the peak corresponding with the Z-axis position of the probe shadow E), and when the smoothness of the surface array 22 is not uniform, the computer-determination of the second peak is not very reliable.
The second possibility to automate control of the liquid junction is to follow the full width of the first peak at half maximum (FWHM). With this approach, the FWHM is relatively constant as the surface array 22 approaches the probe 24, but experiences a sudden rise when the probe tip 26 and the surface shadow begin to merge followed by a linear decrease in the FWHM value when the merger is complete. This method is further improved by setting a line at the outset of the experiment that represented the edge of the probe tip 26 (e.g. line L3 in
In an actual automated surface sampling experiment, there are four stages, with software variables for optimization of each, to form and maintain a stable liquid microjunction between the probe tip 26 and the surface array 22. In the first stage, the surface array 22 is moved closer to the probe tip 26 until the distance between the half peak width on the surface side of the Z-axis LAB peak (Wp, ½) reaches a preset value corresponding to the situation illustrated and described in
As far as the analysis of the collected samples are concerned, the samples collected from the surface array 22 through the probe 24 are conducted to the mass spectrometer 32 and are analyzed thereat in a manner known in the art. As mentioned earlier, the second control computer 34, having a display screen 38 and a keyboard 39 through which commands can be entered into the computer 34 for controlling the operation and data collection of the mass spectrometer 34.
It is common that during a sample-collection operation performed with the system 20, the surface array 22 is moved relative to the probe 24 within the X-Y plane so that the tip 26 of the probe 24 samples the surface array 22 as the surface array 22 sweeps beneath the probe 24. For this purpose and by way of example, the computer 30 can be pre-programmed to either index the surface array 22 within the X-Y plane so that alternative locations, or spots, can be positioned in vertical registry with the probe tip 26 for obtaining samples at the alternative locations or to move the surface array 22 along an X or Y coordinate axis so that the surface array 22 is sampled with the probe 22 along a selected lane across the surface array 22. In this latter example and upon completion of a single pass of the surface array 22 beneath the probe tip 26 along, for example, the X-axis, the surface array 22 can be indexed along the Y-axis by a prescribed, or preprogrammed amount, to shift an alternative X-coordinate lane into registry with the probe tip 26 for a subsequent pass of the surface array 22 beneath the tip 26 along the X-axis for continued sampling purposes. In experiments performed by applicants, samples were collected with the probe 24 at constant sweep, or scan, speeds of about 44 μm per second, but in the interests of the present invention, samples can be collected at alternative, or customized (i.e. varying) scan speeds.
With reference to
Meanwhile, the dotted lines 64 and 66 depicted in
The determined actual distance is then compared, by means of appropriate software 70 running in the computer 30, to the desired target distance between the probe tip 26 and the surface array 22, which target distance is bounded by the prescribed limit lines 64 and 66. If the actual probe-to-surface array distance is determined to fall within the prescribed limit lines 64 and 66, no relative movement or adjustment of the surface array 22 and the probe tip 26 along the Z-axis is necessary. However, if the actual probe-to-surface array distance is determined to fall upon or outside of the prescribed limit lines 64 and 66, relative movement between or an adjustment of the relative position between the surface array 22 and the probe tip 26 is necessary to bring the actual probe-to-surface array distance back within the prescribed limits corresponding with the limit lines 64 and 66. Accordingly and during a sample-collection operation as depicted in
By comparison and during a sample-collection operation as depicted in
It follows from the foregoing that a system 20 and associated method has been described for controlling the probe-to-surface array distance during a surface sampling process involving electrospray-mass spectrometry (ES-MS) equipment. In this connection, the system 20 automates the formulation of real-time re-optimization of the sampling probe-to-surface liquid microjunction using image analysis. The image analysis includes the periodic capture of still images from a video camera 44 whose lens 45 is directed toward the region adjacent the tip 26 of the sampling probe 24 followed by analysis of the captured images to determine the actual sampling probe-to-surface array distance. By determining this actual probe-to-surface array distance and then comparing the actual probe-to-surface array distance to a target probe-to-surface array distance which corresponds to the probe-to-surface array distance at which the optimum liquid microjunction is presented between the probe tip 26 and the surface array 22, the system 20 can automatically formulate the optimal liquid microjunction between the probe tip 26 and the surface array 22 and continuously re-optimize the probe-to-surface array during the experiment by adjusting the spaced probe-to-surface distance, as necessary, along the Z-coordinate axis. If desired, the surface array 22 can be moved along the X-Y plane (and relative to the probe 24) to accommodate the automatic collection of samples with the probe 24 along multiple parallel lanes upon the surface array 22 with equal or customized spacing between the lanes. As mentioned earlier and although samples were collected from the surface array 22 during the aforediscussed experiments at constant scan speeds, samples can be collected in accordance with the broader aspects of the present invention at customized, or varying, scan speeds.
The principle advantages provided by the system 20 and associated method for controlling the probe-to-surface array distance throughout a sample-collection process relate to the obviation of any need for operation intervention and manual control of the probe-to-surface array distance (i.e. along the Z-coordinate axis) during a sample-collection process. Accordingly, the precision of a sample-collection operation conducted with the system 20 will not be limited by the skill of an operator required to monitor the sample-collection process.
Applicants have also determined that the system and method described herein can be used for imaging applications, and such applications have been substantiated through experimentation. For example and with reference to
d shows the image of the inked letters based on a normalized mass spectrometric selective reaction monitoring detection (SRM) ion current profile along the thirteen scanned lanes. The darker areas in the image of
The data provided in
It will be understood that numerous modifications and substitutions can be had to the aforedescribed embodiment without departing from the spirit of the invention. For example, although the aforedescribed embodiments have been shown and described wherein the probe 24 is supported in a fixed, stationary condition and the surface array 22 is moved relative to the probe 24 along either the X, Y or Z-coordinate directions to position a desired spot or development lane in registry with the probe tip 26, alternative embodiments in accordance with the broader aspects of the present invention can involve a surface array which is supported in a fixed, stationary condition and a probe which is moveable relative to the surface array along either the X, Y or Z coordinate directions. Accordingly, the aforedescribed embodiments are intended for the purpose of illustration and not as limitation.
This invention was made with Government support under Contract No. DE-AC05-00OR22725 awarded by the U.S. Department of Energy to UT-Battelle, LLC, and the Government has certain rights to the invention.
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Number | Date | Country | |
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20060273808 A1 | Dec 2006 | US |