Unless otherwise indicated herein, the materials described in this section are not prior art to the claims in this application and are not admitted to be prior art by inclusion in this section.
Small samples of human tissue are often required for a definitive disease diagnosis and prognosis. Needle biopsy specimens from tissue are less invasive and costly than surgically removed tissue: samples. Typically, these specimens are elongated samples-of tissue with a core specimen of 0.3 to 3.0 mm in diameter aul up to 2.5 cm in length. Often these needle biopsy tissues are removed from the body in a vital or living stale although chemically-and mechanically fragile. The processing steps often require chemical fixation using alcohol or formalin to halt unwanted chemical changes and prevent mechanical damage. To provide optical contrast in imaging the cells and tissue, stains are applied to highlight different structures, immediate and rapid processing of such specimens can provide valuable information, such as whether the needle sampled from the tumor and provided an adequate amount of material to make a diagnosis and chemical analysis. A a pid view of the surface of the needle biopsy can provide this adequacy test, and a higher quality view can provide a disease diagnosis. Deeper views into the tissue or tissue fragments can provide comparative measures of the disease and host immune response and provide a means to stage the cancer and any metastatic growth. These needle biopsies are also valuable for doing more personalized therapies based on genomic (e.g. DNA), iranscriptonrics (e.g. RNA), proteomie (e.g. protein), metabolomics (e.g. metabolites), glyomies, (collectively “omics”) analysis from the diseased ceils and regions and their surrounding cells and tissue matrix.
The current methods of handling: needle biopsy-specimens is a series of manual steps that end up by adhering the cells or thin sections of the tissue onto glass slides and observing the fixed and stained specimen on an optical microscope. This method takes from several hours to several days and is destructive to the cells and tissue. If the needle did not adequately sample the targeted region, such as a tumor, them the patient will need to return in order to repeat the needle biopsy procedure for a more diagnostic sample. Once the sample is determined be diagnostic, there are challenges to perform ‘omics analysis on the plated and paraffin encased specimen, so often a second needle biopsy is obtained which adds cost, more suffering, and risk of sampling error. Furthermore, the conventional view of the. cells and tissue by a cyto!ogist and pathologist is two-dimensional (2D), and depth information is lost.
Example devices and methods described herein describe various fluidic devices, systems, and methods 6 use. In particular, the present disclosure provides fluidic. devices, systems, and methods for use that enables microscopic imaging around the circumferential surface of a biological specimen sampled from tissue by axially stretching an elastic tube that is holding the specimen, thereby temporarily retaining the specimen so that it may be rotated and imaged with precision.
In one aspect; a fluidic device is provided including (a) an elastic tube having a first end and a second end, (b) a first actuator coupled to as outer surface of the elastic tube between the Hist end and the second end of the eiastie tube, (c) a second actuator coupled to the outer surface of the elastic tube between the first actuator and the second end of the elastic tube, wherein the first actuator and the second actuator are configured 10 move apart from one another to transition a portion of the eiastie tube positioned between the first actuator and the second actuator from a. first condition to a second condition, and wherein a diameter of the portion of the eiastie tube positioned between the first: actuator and the second actuator is greater in the first condition than in the second condition, and (d) one or more rotatable components-coupled to the first actuator and the second actuator, wherein the one or more rotatable components are configured such that a rotation of the one or mors: rotatable components causes the portion of the elastic tube positioned between the first actuator and the second actuator to rotate.
in a second aspect, a system is provided. The system may include (a) the fluidic device of the first aspect, (b) ah imaging device positioned adjacent to the portion of the elastic tube positioned between the first actuator and the second actuator, (c) at least one processor, and (d) data storage including program instructions stored thereon that when executed by the at. least one processor, cause the fluidic device to perform functions. The functions may include (i) position a biological specimen sampled from tissue in the portion of the elastic-tube positioned between the first actuator and the second actuator, (ii) Increase, via the-first actuator coupled to the elastic tube and the second actuator coupled to the elastic tube, a distance between the first actuator and the second actuator to thereby transition the portion of the elastic tube positioned between fee first actuator and the second actuator from a first, condition to a second condition, wherein a diameter of the portion of the elastic tube positioned between the first actuator and the second actuator is greater in the first condition than in the second condition, and (in) rotate, via one or more rotaiable components coupled to the first actuator and the second-actuator, the portion of the elastic tube positioned between the first actuator-and. the second actuator including the biological specimen sampled from tissue to a plurality of angular positions.
in a third aspect, a method is provided. The method may include (a) positioning a biological specimen sampled from tissue in an elastic tube of a flaidic device, (b) stretching the elastic tube from a first condition to a second condition, wherein a diameter of the elastic tube is greater in the first condition than in the second condition, and (c) rotating the elastic tube and the biological specimen sampled from tissue to a plurality of angular positions while the-elastic tube—is in the second condition.
These as well as other aspects, advantages, and alternatives,—will become apparent to those of ordinary skill in the art by reading the. following detailed description,—with reference where appropriate to the accompanying drawings.
Example methods and systems are described herein. It should be understood that the words “example,” “exemplary,” and “illustrative” are used herein to mean “serving as an example, instance, or illustration:” Any embodiment or feature described herein as being an “example,” being “exemplary, or being “illustrative” is not necessarily to be construed as preferred or advantageous over other-embodiments or features. The example embodiments described herein are not meant to be limiting. It will be readily understood that the aspects of the present disclosure, as generally described herein, and illustrated in the. figures, can be arranged, substituted, combined, separated, and designed in a wide variety of different configurations, all of which are explicitly contemplated herein.
Furthermore, the particular arrangements shown in. the Figures should nm be viewed as limiting. It should he understood that other embodiments may include more or less of each element shown in a given Figure. Further, some of the illustrated elements may be combined or omitted. Yet further, an example embodiment may include elements that are not illustrated in the Figures.
in
In
Unless otherwise indicated, the terms “first,” “second,” etc, are used herein merely as labels, and are not intended b impose ordinal, positional, or hierarchical requirements on the items to which these terms refer. Moreover, reference to, e.g., a “second” itenr does not require or preclude the existence of e.g., a “firsf” or lower-numbered item, and/or, e.g., a “third” or higher-numbered item.
Reference herein to “one embodiment” or “one example” means that one or more feature, structure, or characteristic described in connection with the example is included in at least one implementation. The phrases “one embodiment” or “one example” in various places in the specification may or may not be referring to the same example.
As used herein, a system, apparatus, device, structure, article, element, component, or hardware “configured to” perform a specified function is indeed capable of performing the specified function without any alteration, rather titan merely having potential to perform the specified function. after further modification. in other words, the system, apparatus, structure, article, element, component, or hardware “configured to” perform a specified function is specifically selected, created, implemented, utilized, programmed, and/or designed for the purpose of performing the specified taction. As used herein, “configured to” denotes existing characteristics-of a system, apparatus, structure, article, element, component, or hardware which enable the system, apparatus, structure, article, element, component, or hardware to perform the specified function without further modification. For purposes of this disclosure. a system, apparatus, structure, article, element, component, or hardware described as being “configured to” perform a particular function may additionally or alternatively be described as being “adapted to” and/or as being “operative to” perform that function.
As used herein, with respect to measurements, “about” means +/−$%.
As used herein, with respect to measurements, {circumflex over ( )}substantially” means+/−5%.
As used herein, “biological specimen sampled from tissue” and “biological specimen” means a sample taken f om a biological tissue. The sample of biological tissue may constitute a biopsy, which can be a fine needle aspiration biopsy (NA or FNAB), a core needle biopsy (CNB) or a surgical (open) biopsy.
As used herein, “threshold flow rate” comprises an instantaneous flow rate in the elastic tube at which the biological specimen moves through the elastic tube.
The present disclosure provides fluidic devices, systems, and methods for use thai enables microscopic imaging around the circumferential surface of a biological specimen sampled from tissue. In particular, as shown in
The flnidie device 100 provides fluid flow move the biological specimen 101 into the elastic tube 106 portion of the rigid frame 102. A pump (e.g., a solenoid dosing pump) may be used for controlled movement of the biological specimen via fluid flow, providing solutions such as phosphate buffered saline (PBS), staining solutions, fixative, and potential optical clearing agents. As shown in
In at least one embodiment, the imaging device 1.04 (e.g., an objective: lens) can be brought up to the surface of the elastic tube 106, as shown in
In at least one embodiment, the biological specimen 101 can be rotated at least +/−180 degrees in a series of steps, at each axial position of the biological specimen 101 within the microscope working distance and imaging device 104 FOV. After the complete panorainic image of the:biological specimen 101 is acquired, the compression holding the biological specimen 101 is released by decreasing the tension on the elastic tube 106 by moving the actuators 108, 110. By flushing with fixative, the biological specimen 101 will be exited from the device and can be put.into the conventional work flow of a pathology lab, as shown in
Due optical scattering, there is an advantage in. rotating: the biological specimen 101 for 3D imaging as it. reduces the maximura depth of imaging (optical path-length in tissue) in half. Rotation also provides advantage in common eases where optical resolution along the optical axis is poorer than the lateral in-plane axes. Furthermore* in several embodiments, the biological specimen 101 can be rotated to provide best in-plane resolution for any feature of interest.
The fluidic device 100 and rapid biological specimen preparation technique lends itself well to Microscopy with Ultraviolet. Sectioning Excitation. (MUSE) using the MUSE Microscopy System, since the deep UV excitation only penetrates 5-10 microns into the surface of the biological specimen. In. several embodiments, the entire outer surface of the (approximately cylindrical) biological specimen it. can be imaged as the specimen is rotated. Since the cylindrical surface is equal to π times the outer diameter times the length of the biological speeimen 101, this is slightly larger in area that the traditional method of taking three thin sections lengthwise of the paraffin-embedded biological specimen to make a cancer diagnosis.
in one example, the fluidic device 100 lurther includes &rigid frame 216 coupled to the elastic tube 202. An example of such a rigid frame 216 is shown in
As shown in
in one example, as shown-n
The length of the portion of the elastic tube 202 positioned between the first actuator 208 and the second actuator 212 may range: from about 10 mm to about 60 mm. The portion of the: elastic tube 202 positioned between the f rst actuator 208 and the second actuator 212. has an inner diameter ranging from about 0.5 mm to about 5 mm. Further, a ratio of an inner diameter of the portion of the elastic tube 202 positioned between the first actuator 208 and the second actuator 212 in the first condition (e.g., partially stretched condition) to an inner diameter of the portion of the elastic tube positioned between the first actuator and the second actuator in the second condition (e.g., a more highly stretched condition) ranges from about 1.5:1 to about 3:1.
Axial stretching of the elastic tube 202 may provide up 2.5× change in the inner diameter of the elastic tube 202 with circular cross-section, depending on the elasticity and elongation specification of the material. The wall thickness of the elastic tube 202 also plays a role in determining the forces applied to the biological specimen ax a given inner diameter. Light compression on the biological specimen tissue surface, enough to keep the biological specimen in contact with the elastic tube 202, is desirable for the rotation and imaging. The slight compression on the biological specimen has the functions of holding the specimen in rigid body rotation with the elastic tube 202 and thins the liquid layer between the elastic tube 202 and tissue of the biological specimen. The soft compression of the elastic tube 202 under tension allows the fragile biological specimen to be held together uniformly while rotational forces are applied evenly along the entire axial length of the biological specimen. This method allows the biological specimen to be in physiological buffer while being gently held, imaged, and rotated, all during the same automated process. Furthermore, the encapsulation of the biological specimen during the rotation and imaging. has little risk: of losing cells or damaging the tissue surface.
The first actuator 208 and the second actuator 212 may take a variety of forms. in one example, the first actuator 208 comprises a first linear actuator that is coupled a the elastic tube 202, and the second actuator 212 comprises a second linear actuator that is coupled to the elastic tube 202, In another example, first actuator 208 comprises a first protrusion coupled to the elastic tube 202, the second actuator 212 comprises a second protrusion coupled to the elastic tube 202, and a rod two directions of threading on it is coupled to the first protrusion and the second protrusion. A motor may be. configured to rotate the rod to move the first and second protrusions equally in opposite directions to thereby stretch the elastic tube 202,
In another example, as shown in
The gripping mechanisms 234 may further enable cleavage of the biological specimen within the elastic tube 202 into two or more pieces using a non-direct contact method. Given the-biohaxard of human tissue prior to fixation, such a non-contact method is preferable. A portion of the biological specimen may be delivered post imaging and pre-fixatton for the added benefit of other analysis methods such as culturing. genomic, proteomic, and other ‘omics analyses. During this process, pinching the elastic tube 2Θ2 provides & means of precisely halting any unwanted downstream motion of the biological specimen during processes such as imaging, rinsing, staining, clearing, and any other chemically modification the specimen.
The one or more rotatabie components 214 may take a variety of forms. In one example, the one or more rotatabie components 214 comprise a single rotatable component coupled to both the first actuator 208 and the second actuator 212. For example, the single rotatabie component could be a single motor that is coupled to both the first actuator 208 and the second actuator 212. As the single motor rotates, that rotation is ta nslated to a rotation of the elastic tube 202, in another example, the one or more rotatable components 214 comprise a first rotatabie component coupled to the first actuate*: 208 and a second rotatable component coupled to the second actuator 212. Other examples are possible as well.
in another example, as shown in
In. certain, embodiments, such as shown in any one of Figures IAS, example fluidie devices may be made using:an additive-manufacnr ng process, such as stercolithography, 3D printing, 3D scanned polymerization; or more traditional methods of molding or casting. As such, the example fluidic devices described above may include a variety of materials, including poly(dimethylsiloxane) (PDMS) which can be optically clear in thin thicknesses from 250 am {ultra violet) to Moo nra (infrared) wavelength range, as examples. In one example, the additive-manufacturing process is a muifi-material additive-manufacturing process such that various components of the fluidic device 100 may be formed using a material with a greater elasticity—than tile other components. For example, the elastic tube 202 may be created: with a/material having-greater elasticity than the rigid frame 216 of the fluidic device 200, Other examples are possible as-well.
Each of the components of the fluidic device 200 described in
In one example, the functions include (i) position a. biological specimen sampled from tissue in the portion of the elastic tube 202 positioned between the first actuator 208 and the second actuator 212, (ii) increase, via the f rst actuator 208 coupled to the elastic tube 202 and the second actuator 212 coupled to the elastic tube 202, a distance between the first actuator 208 and the second actuator 212 thereby transition the portion of the elastic tube 202 positioned between the first actuator 208 and the, second actuator 212 from a first condition to a second condition, wherein a diameter of the portion of the elastic tube 202 positioned between the first actuator 208 and the second actuator 212 is greater in the first condition than in the second condition, and (iii) rotate, via one or more rotatable components 214 coupled to the first actuator 208 and. the second actuator 212, tire portion of the elastic tube 202 positioned between the first actuator 208 and the second actuator 212 including the biological specimen sampled from tissue to a plurality of angular positions.
The imaging device 302 may take many forms, including but not limited to, a smartphone camera, an. all-purpose digital camera, a machine vision camera (e.g., a CCD, or CMOS sensor with an attached variable or fixed focus lens or positioner), or a standalone optoeSctric component, such as an LED transmitter and a photodiode, a phototransistor, or a photoresistor detector (e.g., transmitier-detecior couples). Such an imaging device 302 may be configured to measure various properties of the biological specimen, for example reflectance, fluorescence, absorbance or transparescy of the biological specimen. The imaging device 302 may further include a light source 310, such as a deep ultra-violet (UV) light source as an example and measure excited fluorescence froa one or more optical stains. Other light sources 310 having longer or shorter wavelengths are possible as well.
In one example, the program instructions 308 are further executable by the at least one processor 304 to cause the system 360 to (i) capture, via the imaging device 302, one or more images of the biological specimen sampled from tissue at each of the plurality of angular positions, and {it) sum each image to create a three-dimensional image of the biological specimen sampled from tissue: In another example, the program instructions 308 are further executable by the at least one processor 304 to cause fee system 300 to (i) capture, via the imaging device 302, a video of the biological specimen sampled from tissue at each of the plurality of angular positions, and (ii) create, using the video of the biological specimen sampled from tissue, a three-dimensional image of the biological specimen sampled from tissue. As a cautionary measure to prevent. excess movement of the elastic tube 202 spanning the field of view for microscopic imaging, in one embodiment, the elastic tube 202 may be lowered slightly after axial stretching to eliminate the gap between the optically clear window 220 and the elastic tube 202. This makes the focal plane position more predictable, and prevents movement due to external vibrations.
In at least one embodiment, by imaging small sections of the elongated cylindrical specimen in time series, such as axial or circumferential strips, the neighboring subsequent strip can he stitched into a growing panoramic image by matching corresponding invariant local feature points that are present in both image strips, such as the overlapping region using the at least one processor 304, the data storage 206, and/or the program instructions 308, Since the biological specimen is dimensional ly stable with high density of features, and there is a restricted order of the series of images, computer vision algorithms can. be used to rapidly sttch into a panoramic image. A blending algorithm can be used to smooth slowly varying differences its brightness at the seam between images. An example computer vision algorithm that detects and describes local features in images is scale invariant feature transform (SIFT) or speeded□up robust features (SURF) for more efficient computation. Other machine vision algorithms can be employed to detect—the presence of the biological specimen within the image chamber of the elastic tube and feedback on the staalag procedure achieve optimal image contrast.
In one example, positioning the biological specimen sampled from tissue in the elastic tube 202 in the portion of the elastic tube 202 positioned between the first actuator 208 and the second actuator 212 comprises (i) inserting a needle into an inlet 228 in fluid communication with the f rst end 204 of the elastic tube 202 and expelling the biological specimen sampled from tissue from the needle, (is) providing a fluid to the elastic tube 202 to contact the biological specimen sampled from tissue, wherein a flow rate of the fluid through the elastic tube 202 is greater than a threshold Sow rate, and wherein the biological specimen sampled from tissue passes through the elastic tube 202 when the flow rate is greater than the threshold flow rate, and (hi) once the biological specimen sampled from tissue is positioned the portion of the elastic tube 202 positioned between the first actuator 208 and the second actuator 212. reducing the flow rate of me fluid to be less than the threshold row rate. The threshold flow rate may range from about 3 mL/min to about 7 mL/min. In one particular example, pulsatile flow via a solenoid pump may be used to move the biological specimen through the fluidie device 200. The pulses may last about 0.05 seconds in one particular example, although other pulse lengths are possible as well. The pulses of fluid flow move the biological specimen through the fluidic device 20. As such, the threshold flow rate ranging from about 3 mL/min to about 7 mL/min may be a range or instantons flow rates.
The fluid used to move the biological specimen through the: elastic tube is selected from a group consisting of optical gels, water, concentrated sucrose, glycerol-based saturated solutions/gels, dimethyl sulfbxide-based saturated solutions/gels, polyethylene glycol, and dextrose. Therefore, the fluid that is used primarily for positioning the biological specimen in the desired location in the elastic tube 202 can also have a second function, such as chemically fixing the biological tissue sample. For example, the fluid can be used to: stein or label the tissue that provides selective optical contrast such as adding absorptive stains (e.g. hematoxylin and eosin), fluorescence stains (e.g. Hoechst) or chemicals that reduce tissue optical scattering (e.g. glycerol). The biological specimen may be-substantially cylindrical in one example, and the elastic. tube 202 in the first condition (e.g., less: stretched condition) may have a dross-sectional height that is at least about 10% greater than a cross-sectional height of the biological specimen.
In one example, as discussed above, the first actuator 208 and the second actuator 212 may each comprise a gripping mechanism 234 including a first jaw 236 positioned on a first side of the. elastic tube 202 and a. second jaw 238 positioned: on an opposite second side of the elastic tube 202. The gripping mechanism 234 is configured to transition from an open condition in which the first jaw 236 and the second jaw 238 are spaced apart to a closed condition in which the first jaw. 236 and the second jaw 238 contact the eiastie tube 202. In such an example, the program instructions 30¾ are. further executable by the at least one processor 304 to cause the system 300 to (i) transition the gripping mechanism 234 of the first actuator 208 and the gripping mechanism 234 of the second actuator 212. from the open condition to the closed condition, and (ii) increase a distance between the gripping mechanism 234 of the first actuator 208 and the gripping mechanism 234 of the second actuator 212 to thereby transition the portion of the elastic tube 202 positioned between the first actuator 208 and the second actuator 2.12 from the first condition to the second condition. In such ah example, the program instructions 308 may be further executable by the at least One processor 304 to cause the system 300 to transition the first jaw 236 and the second jaw 238 of the first actuator from the open condition the closed condition to sever a: portion of the biological specimen sampled from tissue. In yet another example, the program instructions 308 may he further executable by the at least one processor 304 to cause the system 300 provide a second fluid to the elastic tube 202 to contact the biological specimen sampled from tissue while the gripping mechanism 234 of the first actuator 208 is in the closed condition; The second. fluid may be a staking fluid, a fixative, or an optical clearing agent as non-limiting examples. By pinching one end of the eiastie tube 202, a pump can be used drive the second fluid into a dead-ended elastic tube 202. In such an arrangement, the ballooning of the. elastic tube 202 provides “a restoring force that can drive the second-fluid back toward the pump without” need of an additional pump.
In another example, as an alternative to flowing through stain continuously during the staining process, but with improved agitation and access of-full concentration stain at the surface of specimen, the biological sample can be turned over in the elastic tube 202 (such a tumbled, while the elastic tube 202 is not stretched and holding specimen at this point). During this tumbling process, the fluid can be cycled back and forth to promote mixing. The fluid-specimen boundary can be agitated via rapid axial-stretch-release of the elastic tube 202,
In at least one embodiment, fluid flow, shear-force can be varied such that cells are moved out of the system 300 (such as to be deposited in fixative of choice) for cytological analysis; whereas, large chunks of tissue are retained in the elastic tube 202 for imaging. Pinching the elastic tube 202 can help retain the tissue fragments. To remove a greater number-of surface ceils for cytological, biochemical, or. mass spectrometry analysis, a chemical digestive agent or proteolytic enzyme ike trypsin or papain can be flowed over the surface of the specimen to release cells. Curvature of the tube can be used to increase the force normal to the tube wall, thus increasing friction of the specimen with the tube wall Such a curvature can be induced in this system 300 by po viding a curved guide for the elastic tube 202 to be constrained by, or by other mechanical manipulation of the tube exterior. Increased friction of the biological specimen with the elastic tube wall may provide better range of. fluid velocities for. separation, and better control of movement
Fine needle aspirates (FNAs) are a form of needle biopsy that are formed with small bore needles (<1 ram ID) in which the clinical process of sampling-creates a slurry of mostly isolated cells. In at least one embodiment to image these cells in the. same method as a tissue encapsulated in the elastic tube 202, the cells need to be adhered to the inside of the tube and come out of solution. A specialized elastic tube 202 that is coated on the inner surface with materials that-allow protein. adsorption is preferred, such as a highly charged surface. For example a silicone tube with. D of >2.0 mm in diameter with a length of >30 mm has a surface area that will bind about 2 million cells as a monolayer, assuming a cell area is (10×10 microns), A breast FNA typically has 2 million cells while a thyroid FNA typically has <2 million ceils. The different types of coatings that are known bind cells are surfaces that have coatings, of polyiysine. hydrophilie silanes, hydroge!s, lectins, nitrocellulose, and extra cellular matrix proteins. Vigorous mixing techniques-previously described can be used to help bind FNA cells to the tube inner surfece, Once bound, then the staining process can continue by flowing staining solution and more mixing. To image the cells, the elastic tube 202 is moved and rotated as described for the imaging the tissue specimens with the aid of refractive index-matching fluid However, mere is no need to stretch the elastic tube axially to achieve a smaller diameter when imaging such cells.
In One-particular use case of the system 300, a core needle biopsy of 1.5 mm outer diameter and 20 mm in length is removed from the-human body and dropped into the tunnel chamber of the fluidic device 200 filled with PBS. If the elongated specimen is not orientated to be flushed into the channel then it can be repositioned by the tip of the needle or another device. Within fluidic device 200 including the rigid frame 516 is clamped: together via the base 222 and the lid 226 seal the elastic tube 202. Creating a pressure drop across the specimen chamber flushes the specimen into the 2.0 mm inner diameter silicone elastic tube 202 and centered in the imaging chamber of over 30 mm in length. The imaging device 302 is used verify the presence of the specimen in the imaging: chamber and provide feedback for centering the specimen in the FGV of the imaging device 302. Movement of the specimen can be affected by applying pulses of PBS at high flow rate. Once centered, the specimen is stained with fluorescence dyes pulses at low rate se the specimen does not move. The fluorescence dyes can be converted to the H& B-(hematoxylin and eosin) standard of pathology: Rinsing with PBS follows staining, again with low flow rate to maintain a stationary specimen in the imaging chamber.
The motorized-actuators 208, 212 engage the elastic tube 202 and apply tension to stretch the elastic tube-and. reduce inner, typically a 2-2.5× axial stretch can reduce the diameter up to 2×. By prior calibration for the size of the core needle biopsy, type of tissue, and choice of elastic tube, die amount of stretch is programmed to gently encapsulate the specimen. The actuators 208, 212 move the specimen to the base of the refractive index-matching fluid cavity 218 to stabilize the elastic tube 202—at a known position for optical imaging. The actuators 208, 212 slide the specimen axially to image one strip lengthwise along the specimen. After imaging, the specimen is rotated 1.0 degrees by rotating and slightly twisting the elastic tube 202 via the one or more rotatable components. The imaging of the neighboring strip is repeated. Before moving to the next strip the new strip is stitched to the previous strip and quality of the image is assessed by the at least one processor 304 of the system 300 and image processing algorithms. This process is repeated until all +/−180 degrees or more are imaged and recorded on the system 300. Once the panoramic image is created of the entire elongated specimen, the actuators 208, 212 release the tension on the eksiic tube 202 and the compression is released from the tissue surface. A burst of chemical fixative or PBS is used to flush the specimen from the imaging chamber into a reservoir which is outside the fluidic device 200. Alternatively, the specimen can be flushed into a reservoir within the fluidic device 200 for storage and transport while in fixative.
In addition, for the method 400 and other processes and methods disclosed herein, the block diagram shows functionality and operation of one possible implementation of present embodiments. 1 this regard, each block may represent a module, a segment or a portion of program code, which includes one or more instructions executable by a processor or computing device for implementng specific logical functions or steps in the process. The program code may be stored on any type of computer readable medium, for example, such as a storage device including a disk or hard drive. The computer readable medium may include non-transitory computer readable medium, for example, such as computer-readable media that stores data for short periods of time like register. memory, processor cache and Random Access Memory (RAM). The computer readable medium may also include uon-transiiory media, such as secondary or persistent long term storage, like read only memory (ROM), optical or magnetic disks, compact-disc read only memory (CD-ROM), for example. The computer readable media may also be any other volatile or moo-volatile storage systems. The computer readable medium may be considered a computer readable storage medium, for example, or a tangible storage device.
initially, at block 402, the method 400 includes positioning a biological specimen sampled from tissue in an elastic tube of a fluidic device. The fluidie device may take the form of the fhtdic devices 100, 200 described above in relation to Figures Iowa-7. At block 404, the method 40.0 includes stretching the elastic tube from a first condition to a second condition, wherein a diameter of the elastic tube is greater in the first condition than in the second condition. At block 406, the method 400 includes rotating the elastic tube and the biological specimen sampled from tissue to a plurality of angular positions while the elastic tube is in the second condition. In one example, the diameter of the elastic tube in the second condition is less than a diameter of the biological specimen sampled from tissue such that die biological specimen sampled from tissue is compressed when the elastic tube is in the second condition.
In one embodiment, the fluidic device includes a first actuator coupled to an outer surface of the elastic tube and a second actuator coupled the outer surface of the elastic tube. In such an example, stretching the elastic tube from the first condition to the second condition comprises increasing, via the-first actuator coupled to the elastic tube and de second actuator coupled to the elastic tube, a distance between the first actuator and the second actuator to thereby transition a portion of the elastic tube positioned between the first actuator and the second actuator from the first condition to the second condition in another embodiment, the fluidic device includes-one or more rotatable components coupled b the first actuator and the second actuator. In such-.an example, rotating the elastic tube. and the biological specimen sampled from tissue to the plurality of angular positions comprises rotating, via the one or more rotatable components, the portion of the elastic tube positioned between the first actuator and the second actuator including the biological specimen sampled from tissue to the plurality of angular-positions.
in another example, the method 400 further comprises (i) capturing, via an imaging device-positioned adjacent to the elastic tube including the biological specimen sampled from tissue, one or more images of the biological specimen sarapled from tissue at each of the plurality of angular positions. and (ii)-summing each image to create a three-dimensiofal image of the biological specimen sampled from tissue. In yet another example, the method 400 furher comprises (i) capturing, via an imaging device positioned adjacent to the elastic tube including the biological specimen sampled from tissue, a video of the biological specimen sampled from tissue at each of the plurality of angular positions, and (ii) creating, using the video of biological specimen sampled from tissue, a three-dimensional image of the biological specimen sampled from tissue.
The method 400 may further include moving the elastic tube and the biological specimen sampled from tissue a plurality of linear positions while the elastic tube is in the second condition. Typically, the microscope field of view is smaller than the length of a biological specimen. This linear movement of the biological specimen prior to rotating enables the entirety of the biological specimen to he imaged.
In another example, the method 400 further includes stretching the elastic tube from the first condition to. the second condition compresses the biological specimen sampled from tissue, In such an example, the compressed biological specimen sampled from tissue is substantially cylindrical. Such art arrangement makes the biological sample easier to focus on and image, in some embodiments, applying force to further atten the biological specimen retained in the elastic tube 202 is desirable, as it will bring. more of the specimen into focus-given-the limited depth of field for many 2D and 3> microscopic imaging applications.
In one example, positioning the biological specimen sampled from tissue-in the elastic tube comprises (i) inserting a needle. into an inlet in fluid communication with a first. end of the elastic, tnbe and expelling the biological specimen sampled from tissue from the needle. ii) providing a fluid to the elastic tube to contact the biological specimen sampled from tissue, wherein a f ow rate of the fluid through the elastic tube is greater than a threshold flow rate, and wherein the biological specimen sampled from tissue passes through the elastic tube when the-flow rate is greater than the threshold flow rate, and (in) once the biological specimen sampled from tissue is positioned in a desired portion of the elastic tube, reducing the flow rate of the fluid to be less than the threshold flow rate. The threshold flow rate may range from about 3 m/mm to about 7 mL/min.
Thus, the computing device 502 may include a display system 506 comprising a processor 508 and a display 510. The display 510 may be, for example, an optical see-through display, an optical see-around display, or a video see-through display. The processor SOS may receive data from the fiuidie device 100. 200 and/or the system. 300, and configure the data 6 display on the display 510. Depending on the desired configuration, processor 508 can be any type of processor including, but not limited to, a microprocessor, a microcontroller, a digital signal processor, or any combination thereof.
The computing device 502 may farther include on-board data storage, such as memory 512 coupled to the processor 508. The memory 512 may store software that can he accessed and executed by the processor 508, for example. Further, processor 508 may receive data from the. fiuidie device 100, 200 and % r the system 300, and confgure the data for storage in the memory 512. The memory 512 can include any type of memory now known or later developed inchiding.but not limited to volatile meaory (such as RAM), non¬volatile memory (such as ROM, flash memory, etc,) or any combination thereof.
According to an example embodiment, the computing device 502 may include program instructions thai are stored in the memory 512 (and/or possibly in another data-storage medium) and executable by the processor 508 to facilitate the various functions described herein. Although various components of the system 500 are shown as distributed components, it should be understood that any of such components may be physically integrated and/or distributed according to the desired configuration of the computing system.
The fluidic device 100, 200 and/or the system 300 and the computing device 502 may contain hardware to enable the communication Sink 504, such as processors, transmitters, receivers, antennas, etc.
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It should be understood that arrangements described herein are for purposes of example only. As such, those skilled in the art will appreciate that other arrangements and other elements (e.g, machines, interfaces, functions, orders, and groupings of functions, etc.) can be used instead, and some elements may be omitted altogether according to the desired results. Further, many of the elements that are described are functional entities that may he implemented as discrete or distributed-components or in conjunction with other components, in any suitable combination and location, or other structural elements described as independent structures: may be combined.
While various aspects and embodiments have been disclosed herein, other aspects and embodiments will be apparent to those skilled in the art. The various aspects and embodiments disclosed herein are for purposes of illustration and are not intended to be limiting, wife the true.scope being indicated by the following claims, along with the-fullscope of equivalents to which such claims are entitled. It is also to be understood that the terminology used herein is for the purpose of describing particular embodiments only, and. is not intended to be limiting.
Since many modifications, variations, and changes in detail can be made to the described example, it is intended that all matters in the preceding description and shown in the-accompanying figures be interpreted as illustrative and not in a limiting sense. Further, it is intended to be understood that the following clauses (and any combination of the clauses) further describe aspects of the present. description.
This application claims priority to U.S. Provisional Patent Application No. 62/582,179, filed Nov. 6, 2017, the contents of which are hereby incorporated by reference in their entirely.
Filing Document | Filing Date | Country | Kind |
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PCT/US18/59344 | 11/6/2018 | WO | 00 |
Number | Date | Country | |
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62582179 | Nov 2017 | US |