Embodiments of the present invention relate generally to assay systems for assaying volumes of biological substances in capillaries and, in particular, to a container for transporting and storing the capillaries and dispensing them during use of the assay system.
A number of methods and systems have been developed for conducting various processing and/or analyses of biological substances, such as those described in U.S. Pat. No. 6,423,536 for temperature cycling processes, U.S. Pat. Nos. 5,843,680, 5,784,154, 5,395,502, and 5,137,609 for separation assay methods, U.S. Pat. No. 5,785,926 for a capillary transport system, international publication WO94/13829 for an isoelectric focusing separation assay system, and U.S. Pat. No. 6,430,512 for a chromatographic fluorescence separation and display system.
U.S. Pat. App. Pub. Nos.: 20060029978 and 20030032035, the disclosures of all of which are incorporated herein by reference, describe apparatus and methods for assaying microliter volumes of cellular material by separating constituent substances of the material in a fluid chamber such as a capillary, binding the separated substances in place, then eliciting an optical response from the bound substances such as fluorescence or chemiluminescence. The resulting information has content similar to that of a Western gel blot but without the complex, extensive and time-consuming handling and processing steps that adversely affect reproducibility and make automation difficult. This technique also has advantages such as the ability to assay very small volumes of materials such as those on the cellular level, and good sensitivity due to the ability to receive optical data from chemiluminescence for as long as necessary to obtain a desirable output signal level. However, it would be desirable to automate this technique so that multiple samples may be analyzed simultaneously or in rapid succession with ease and robustness while only consuming minimal volumes of precious reagents and expensive disposables. It is also desirable to develop a container for transporting and storing the capillaries and dispensing them during use of the assay system.
In accordance with the principles of the present invention, in some embodiments, a capillary container is provided in which the capillaries can be shipped from the manufacturer and stored by the user prior to use in an automated micro-volume assay system. The container includes a cover which protects coated capillaries from environmental hazards prior to use. The container holds the capillaries in a vertical position so that the base of the container can be used as a capillary rack in the automated assay system. To enable the container and capillaries to be used in an automated assay system without machine vision, the capillaries are positioned on pre-determined center-to-center spacings which can be programmed into the control computer of the assay system.
In various embodiments, the capillary container holds a plurality of capillaries in a vertical position which is suitable for use in an automated assay system and the container comprises: a removable cover which can be secured on top of the container, the cover providing clearance for the upper portions of a plurality of capillaries which are loaded into the container; and a base having a plurality of holes arranged in a grid-like pattern which hold capillaries in an upright vertical position, the holes holding the capillaries in a vertical orientation by circumferentially surrounding the capillaries, the base having a lower portion with positions aligned vertically with the tops of the holes which support the capillaries at the bottom ends of the capillaries.
In some embodiments, the holes are funnel-shaped at the top to provide for ease in insertion of the capillaries into the holes. In some embodiments, the holes are arranged in a grid-like pattern of ninety-six holes of eight rows of twelve holes, whereby a fully loaded container contains ninety-six capillaries. In some embodiments, the holes are arranged in a grid-like pattern of 384 holes of sixteen rows of twenty-four holes, whereby a fully loaded container contains 384 capillaries. In some embodiments, the positions supporting the capillaries at the bottom ends comprise tapered apertures each of which guides an inserted capillary to a position vertically aligned with the top a hole which is slightly larger than the diameter of a capillary. In some embodiments, the base measures approximately 1.6 inches by 2.5 inches. In some embodiments, the grid-like pattern of holes further comprises a plurality of holes with a 0.18 inch center-to-center spacing. In some embodiments, the base exhibits a space between the part of the holes which circumferentially surround the capillaries at the top of the hole and the lower portion which supports the capillaries at the bottom ends of the capillaries.
In various embodiments, the base further comprises: a top surface having a plurality of funnel-shaped holes formed therein, and a support structure, located beneath the top surface, which provides rigidity to the top surface.
In various embodiments, the base further comprises: an upper portion including a top surface having the plurality of funnel-shaped holes arranged in the grid-like pattern which support vertically oriented capillaries by providing circumferential support to the capillaries; and a lower portion providing the inside bottom of the container and providing the positions vertically aligned with the tops of the holes of the top surface, the lower portion supporting the capillaries at the bottom ends of the capillaries.
In another aspect, the present invention provides an injection molded polymeric capillary container which holds ninety-six capillaries in a vertical position. The container comprises: a polymeric base which holds the capillaries in a vertical position by a top surface with ninety-six holes which circumferentially surround the- capillaries, with the capillaries extending over one-half inch above the top surface, and a bottom which supports the bottom ends of the capillaries in ninety-six predetermined positions which are vertically aligned with the holes of the top surface; and a polymeric cover which removably fits over the top of the base and covers the capillaries that are located in the base.
In various embodiments, the polymer is electrically conductive to retard static buildup. In some embodiments, the polymeric base comprises two portions: an upper portion having a structurally reinforced top surface containing ninety-six funnel shaped holes for receiving capillaries; and a lower portion which press-fits together with the upper portion, the lower portion having ninety-six centering supports which support the ends of capillaries in vertical alignment with the funnel shaped holes and are tapered to locate the ends of the capillaries at the ninety-six positions.
In various embodiments, the polymeric base further includes a shoulder which defines the position of the cover when the cover is fit over the top of the base, the defined position providing a space between the cover and the base into which capillaries loaded into the container can extend, the capillaries extending over half of the distance between the top of the base and the cover.
In various embodiments, the present invention provides a capillary container comprising: a removable cover which can be secured on top of the container, the cover providing clearance for the upper portions of a plurality of capillaries which are loaded into the container; and a base having a plurality of holes arranged in a grid-like pattern which hold capillaries in an upright vertical position, the holes holding the capillaries in a vertical orientation by circumferentially surrounding the capillaries, the base having a lower portion with positions aligned vertically with the tops of the holes which support the capillaries at the bottom ends of the capillaries, wherein said container holds 96 capillaries with about 4.5 mm center-to-center spacing.
In various embodiments, the present invention provides an injection molded polymeric capillary container which holds ninety-six capillaries in a vertical position. The container comprises: a polymeric base which holds the capillaries in a vertical position by a top surface with ninety-six holes which circumferentially surround the- capillaries, with the capillaries extending over one-half inch above the top surface, and a bottom which supports the bottom ends of the capillaries in ninety-six predetermined positions which are vertically aligned with the holes of the top surface; and a polymeric cover which removably fits over the top of the base and covers the capillaries that are located in the base, wherein said container holds capillaries with about 4.5 mm center-to-center spacing.
a-2d are plan and cross-sectional views of the cover of a capillary storage and dispensing container of the present invention.
a-4g are plan and cross-sectional views of the upper section of the base of a capillary storage and dispensing container of the present invention.
a-5e are plan and cross-sectional views of the lower section of a base of a capillary storage and dispensing container of the present invention which fits together with the upper section of
a-10d are plan and cross-sectional views of the cover of a capillary storage and dispensing container according to some embodiments of the present invention.
a-13g are plan and cross-sectional views of the upper section of the base of a capillary storage and dispensing container according to some embodiments of the present invention.
a-14e are plan and cross-sectional views of the lower section of a base of a capillary storage and dispensing container according to some embodiments of the present invention which fits together with the upper section of
Embodiments of the present invention provide a container for transporting and storing the capillaries and dispensing them during use of an assay system.
U.S. Patent Application Publication No.: 2006/0249558 (Roach et al.), incorporated herein by reference, describes an automated micro-volume assay system in which a biological sample is introduced into a very small volume capillary. The constituent substances of the sample are separated electrophoretically, then bound in place to a coating which lines the capillary. An antibody to the proteins of interest is flowed through and binds to those proteins. A chemiluminescent reagent is flowed through the capillary which interacts with an enzyme attached to the antibody to elicit an optical response from the bound substances. The optical response is detected through the wall of the capillary by an optical detector, with the location of the optical emission providing an indication of a characteristic of the biological sample. Such an assay system provides information similar to that of a Western gel blot, but without the time-consuming handling and processing and ambiguities of the Western blot technique.
The assay system described in this patent application publication has a base on which reagents, biological samples, capillaries, and capillary holders are initially located in pre-determined positions. When operation of the system begins with the operative materials and components located in pre-assigned positions, the positions of the materials and components can be programmed into a computer that controls the system. The computer can then control the operation of various manipulators, stepper motors, and vacuum devices that automatically access the materials and components at their known positions on the base and carry out the processing of the assay system fully automatically. A key to making this automation effective without the complexity of machine vision is to know in advance the locations and positions of all of the materials and elements needed to conduct the process, and to program the system computer accordingly to automatically access them.
In the case of the capillaries, a pair of bulk capillary racks are located at specific capillary rack stations on the base of the assay system. The capillaries to be used in the process are initially located in these racks, then moved to a staging rack from which capillaries are selected for use in biological sample processing. The capillary racks hold capillaries upright in rows with a pre-defined center-to-center spacing. The pre-defined spacing permits the capillaries to be removed from the rack by a robotic computer-controlled capillary manipulator which is programmed and controlled to access the capillaries at their known locations.
However, initially loading the capillaries into the racks by hand can be challenging. The capillaries are very small with diameters on the order of 100 μm to 2 mm and lengths ranging from 30 to 100 mm. Handling the capillaries can contaminate them with body oils which can interfere with the optical properties necessary to detect the luminescence emitted from inside the capillaries. The buildup of electrostatic energy can cause both handling problems and attraction of particles which disrupt the use and function of the capillaries. Moreover, in the assay system described in this patent publication the capillaries are very closely spaced, with center-to-center spacings ranging from 4.5 mm to 9 mm. The density of capillaries in the capillary racks is also substantial, with a full rack holding 96 to 384 capillaries. The efficiency gained by fully automating the assay processing can be lost to the time required to insert the capillaries into the racks in preparation for system for operation.
Accordingly, it would be desirable for a system user to be able to buy the capillaries from the manufacturer pre-loaded in capillary racks which can be directly used in the capillary rack stations of the assay system, obviating the need to manually handle the capillaries prior to use.
Moreover, it would further be desirable to buy the capillaries pre-coated with the immobilizing coating so that the user does not have to spend time coating the capillaries and enduring the inefficiencies and vagaries associated therewith.
It is further desirable to protect the coated capillaries in containers which keep the capillaries secure from environmental hazards and physical damage prior to use.
It is also desirable to be able to ship and store the capillaries in the same containers, obviating the need to transfer them.
Reference will now be made in detail to various embodiments of the present invention(s), examples of which are illustrated in the accompanying drawings and described below. While the invention(s) are described in conjunction with exemplary embodiments, it will be understood that the present description is not intended to limit the invention(s) to those exemplary embodiments. On the contrary, the invention(s) is/are encompass not only the exemplary embodiments, but also various alternatives, modifications, equivalents and other embodiments, which are included within the spirit and scope of the invention as defined by the appended claims.
One exemplary embodiment of the invention is shown in
Referring first to
The container 10 has a cover 12 which fits over a base that holds a plurality of capillaries in a vertical, upright position. The base is formed of two sections which press-fit together, an upper section 30 and a lower section 60. The bottom portion 34 of the upper section 30 is wider than the top portion 36 so that the cover 12 will fit over the top portion and cover the capillaries, while the bottom portion fits snugly over and around the lower section 60 of the base in a secure press-fit. When the top and bottom sections 30, 60 are mated together, the capillary holes in the top of the upper section 30 are in alignment with the capillary receivers of the lower section 60, which cooperate to hold the capillaries upright with the circumferential holes in the top and the funneled receivers in the bottom. The removable cover 12 is retained over the top portion 36 of the base by engagement with four ribs 32, two of which are molded on either side of the top portion 36 of the base.
a-2d show various views of the cover 12.
Details of the upper section 30 are shown in
To provide rigidity for the top surface 38 and prevent warping and bending, an egg-crate ribbing 46 is formed inside the upper portion 36. The sections of the ribs inside of the periphery are on the same 0.35 inch spacing as the capillary holes 40. The thickness of the ribbing 46 is about 0.053 inches as indicated in
a-5e are different views of the lower section 60 of the container which press-fits inside of the upper section 30. The lower section 60 supports the capillaries in their upright vertical orientation by supporting the lower ends of the capillaries. Aligned with the holes 40 of the upper section are ninety-six centering supports 62 for the lower ends of the capillaries. As indicated in
The lower section 60 measures about 3.2 inches wide by 4.8 inches long as shown in
The upper part of each capillary 80 extends about 0.68 inches above the top surface 38 of the upper section 30. A typical capillary is made of glass or a transparent plastic material and is about two inches (50 mm) in length with an outer diameter of about 0.015 inches. When the cover 12 is put in place the cover surrounds the upper portion 36 of the upper section 30 of the container down to the shoulder 43 between the upper and lower portions 36, 34 of the section 30 and provides clearance for the upward extending capillary between the top surface 38 and the inner surface of the top 22 of the cover 12. In a constructed embodiment there is about 0.70 inches of clearance between the top surface 38 and the inner surface of the cover 12, which prevents the capillaries from coming out of the holes during handling and shipping of a loaded container. When a loaded container has arrived at a user's facility the capillaries 80 can be stored in the container 10 until they are to be used. When the capillaries are to be put to use in an automated assay system, the cover 12 is removed from the container 10 and the rest of the container, comprising the upper and lower sections 30 and 60, loaded with the capillaries 80, is put on a capillary holder station of the assay system. The capillaries are then ready for automated access and use in an analytical procedure of the assay system.
It is generally preferred to have container for capillaries in the standard 96 and 384 configurations. In the 96 configuration, the center-to-center spacings ranging is about 9 mm. In the 384 configuration, the center-to-center spacings ranging is about 4.5 mm. Thus the spacing of the capillaries will be similar to the standard 96 well plates and 384 well plates so that these standard plates can be used to store samples and/regents to be loaded to the capillaries. However, in some embodiments, such standard 9 mm spacing of 96 capillaries is problematic as such spacing requires a much bigger footprint and creates complexity in manipulating the capillaries. The inventors have discovered that contrary to the standard use in the industry, a different configuration as provided by some embodiments of the present invention is advantageous in carrying out the assaying of biological samples. In one embodiment, a narrower spacing is employed which enables advantage for the separation and/or detection steps by promoting easier image capturing. In prior art system, capillaries need to be rearranged between a narrow spacing that is less than 9 mm and a 9 mm spacing. Embodiments of the present invention provides a container with particular spacing between the capillaries that is compatible with the assay system where narrow spacing is used for capillaries handling. Such narrow spacing (about 4.5 mm for 96 capillaries) is different from the standard adopted by the industry, but provide the surprising advantages to enable a faster and simpler process to carry out the assay described in U.S. Pat. App. Pub. Nos.: 20060029978 and 20030032035.
Thus, in another aspect, the present invention provides a container where the capillaries are very closely spaced, with center-to-center spacing ranging from 4.5 mm to 9 mm. The density of capillaries in the capillary racks is also substantial, with a full rack holding 96 to 384 capillaries.
Another exemplary embodiment of the invention is shown in
Referring first to
The container 210 has a cover 212 which fits over a base that holds a plurality of capillaries in a vertical, upright position. The base is formed of two sections which press-fit together, an upper section 230 and a lower section 260. The bottom portion 234 of the upper section 230 is wider than the top portion 236 so that the cover 212 will fit over the top portion and cover the capillaries, while the bottom portion fits snugly over and around the lower section 260 of the base in a secure press-fit. When the top and bottom sections 230, 260 are mated together, the capillary holes in the top of the upper section 230 are in alignment with the capillary receivers of the lower section 260, which cooperate to hold the capillaries upright with the circumferential holes in the top and the funneled receivers in the bottom. The removable cover 212 is retained over the top portion 236 of the base by engagement with two ribs 232, one of which is molded on either side of the top portion 236 of the base.
a-10d show various views of the cover 212 according to some embodiments.
Details of the upper section 230 are shown in
To provide rigidity for the top surface 238 and prevent warping and bending, an egg-crate ribbing 246 is formed inside the upper portion 236. The sections of the ribs inside of the periphery are on the same 0.18 inch spacing as the capillary holes 240. The thickness of the ribbing 246 is about 0.05 inches as indicated in
a-14e are different views of the lower section 260 of the container which press-fits inside of the upper section 230. The lower section 260 supports the capillaries in their upright vertical orientation by supporting the lower ends of the capillaries. Aligned with the holes 240 of the upper section are ninety-six centering supports 262 for the lower ends of the capillaries. As indicated in
The lower section 260 measures about 1.6 inches wide by 2.5 inches long as shown in
The upper part of each capillary 280 extends about 0.68 inches above the top surface 238 of the upper section 230. A typical capillary is made of glass or a transparent plastic material and is about two inches (50 mm) in length with an outer diameter of about 0.015 inches. When the cover 212 is put in place the cover surrounds the upper portion 236 of the upper section 230 of the container down to the shoulder 243 between the upper and lower portions 236, 234 of the section 230 and provides clearance for the upward extending capillary between the top surface 238 and the inner surface of the top 222 of the cover 212. In a constructed embodiment there is about 0.70 inches of clearance between the top surface 238 and the inner surface of the cover 212, which prevents the capillaries from coming out of the holes during handling and shipping of a loaded container. When a loaded container has arrived at a user's facility the capillaries 280 can be stored in the container 210 until they are to be used. When the capillaries are to be put to use in an automated assay system, the cover 212 is removed from the container 210 and the rest of the container, comprising the upper and lower sections 230 and 260, loaded with the capillaries 280, is put on a capillary holder station of the assay system. The capillaries are then ready for automated access and use in an analytical procedure of the assay system.
It is understood that the examples and embodiments described herein are for illustrative purposes only and that various modifications or changes in light thereof will be suggested to persons skilled in the art and are to be included within the spirit and purview of this application and scope of the appended claims. All publications, patents, and patent applications cited herein are hereby incorporated by reference for all purposes.
This application is a continuation-in-part of U.S. patent application Ser. No. 11/893,733 filed Aug. 17, 2007, which is continuation-in-part of U.S. patent application Ser. No. 11/401,699 filed Apr. 10, 2006, which claims the benefit of U.S. provisional application No. 60/669,694, filed on Apr. 9, 2005, all of which are incorporated by reference herein in their entirety.
Number | Date | Country | |
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60669694 | Apr 2005 | US |
Number | Date | Country | |
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Parent | 11893733 | Aug 2007 | US |
Child | 12426166 | US | |
Parent | 11401699 | Apr 2006 | US |
Child | 11893733 | US |