Patent Application
20230248780
The present invention relates to, in part, cell-based gene therapies for various disorders, including neurodegenerative disorders, including, without limitation, Amyotrophic Lateral Sclerosis (ALS) and Alzheimer's disease.
The contents of the text file submitted electronically herewith are incorporated herein by reference in their entirety: A computer readable format copy of the Sequence Listing (filename: ALS-007PC_ST25; date recorded: Nov. 6, 2019; file size: 163,000 bytes).
Diseases of the brain and central nervous system (CNS) can have permanent and devastating consequences on the physical and social well-being of the affected individual. In some cases, highly invasive surgery is required to correct the source of the problem or improve the symptoms of disease. Alternatively, or in addition, medication may be used to treat the cause or symptoms of disease.
Methods for effective administration of medicines to and/or past the blood brain barrier (BBB) and often onwards into the brain, are needed. To date, the focus has been on receptor-mediated ligand targeting; however, this is hindered by a lack of receptors which are exclusively expressed at the BBB. Delivery of biologic agents, e.g., antibodies, across the BBB continues to be a challenge. For instance, the humanized anti-VEGF monoclonal antibody bevacizumab (AVASTIN) has also been developed as a targeted treatment of brain cancer. However, a randomized, double-blind, placebo-controlled clinical trials showed no overall improvement to patient survival rates following this treatment regime (Gilbert, et al. ‘A Randomized Trial of Bevacizumab for Newly Diagnosed Glioblastoma’ N. Engl. J. Med. 2014, 699-708), perhaps due to poor penetration of the antibody across the BBB. Accordingly, there is a need for improved delivery of agents, especially biologic agents, across and/or past the BBB.
Protein aggregations that result from abnormal protein folding form different deposits called amyloid which is associated with different diseases including but not limited to neurodegenerative disorders and Type II diabetes mellitus.
Neurodegenerative disorders, such as Parkinson's, Huntington's and Alzheimer's diseases, fronto-temporal lobar degeneration (FTLD) and Amyotrophic Lateral Sclerosis (ALS) are associated with the accumulation of misfolded proteins both inside and outside of neuronal and glial cells in the central nervous system. These misfolded protein aggregates are pathological hallmarks of these diseases. The major component of these aggregates is characteristic for each neurodegenerative disease, e.g. α-synuclein for Parkinson, Huntingtin for Huntington, Aβ for Alzheimer disease. Although the major protein component of the pathological aggregation may be unique for each of the diseases, several proteins misfold and accumulate in multiple diseases. The most glaring example is TDP43, which aggregates in ALS, FTLD and many other conditions. Another example is Tau proteins which stabilize microtubules in the neurons. Defective Tau proteins are discovered and associated with Alzheimer's and Parkinson's diseases. Further, beta amyloid is associated with Alzheimer's disease.
Type II diabetes mellitus is associated with a decrease in insulin secretion as a result of β-cells failure. Islet amyloid polypeptide (IAPP) is co-localized with insulin in the islet β-cells to play a role in regulating glucose levels by suppressing food intake and gastric emptying. In Type II diabetes, IAPP aggregates to form amyloid fibrils which are toxic to β-cells.
While there is some understanding in the field of therapeutics antibodies about the role of aggregation in disease progression, there is a paucity of safe and effective therapies for various neurodegenerative disorders and type II diabetes mellitus.
Accordingly, the present invention relates to, in some aspects, therapies involving cell-based gene agents which effectively deliver therapeutic agents across the BBB. In some aspects, the present invention relates to therapies involving cell-based gene agents which effectively deliver therapeutic agents to and/or past the BBB, for example to the brain parenchyma and/or microvasculature. The present invention relates to, in some aspects, therapies involving cell-based gene therapies comprising nucleic acid vectors encoding antibodies against components of the aggregates. For example, the present invention contemplates a cell (e.g., a microvascular endothelial cell), or precursor thereof, engineered to release a therapeutic protein or peptide (e.g., a soluble protein or peptide), including, without limitation, an antibody or antibody fragment, at a site of therapeutic action.
Such therapies may solubilize the intra- or extra-cellular protein aggregates and inhibit the spreading of the disease. In some aspects, the present invention provides for a method for treating or preventing a neurodegenerative disease (e.g., Parkinson's disease, Huntington's disease, Alzheimer's disease, fronto-temporal lobar degeneration (FTLD) and Amyotrophic Lateral Sclerosis (ALS)), comprising administering to a subject a cell, or precursor thereof, engineered to release a therapeutic protein or peptide, including, without limitation, an antibody or antibody fragment, at a site of therapeutic action. In some embodiments, the microvascular endothelial cell is derived from bone marrow of the patient or subject. In some embodiments, the microvascular endothelial cell is from the central nervous system (CNS), optionally the brain. In further embodiments, the site of therapeutic action is selected from, but not limited to, the brain, the CNS, the heart, the liver, and the pancreas. In some embodiments, the microvascular endothelial cell is derived from the subject having the neurodegenerative disorder in need of treatment.
In some aspects, the present invention relates to compositions and methods involving cell-based gene therapies comprising nucleic acid vectors encoding antibodies against components of disease-related aggregates. Such compositions and methods may solubilize the intra- or extra-cellular protein aggregates and inhibit the spreading of the disease once released at the therapeutic site of action. Such compositions and methods cross the BBB (e.g. better BBB crossing than antibodies delivered via standard methods, e.g., intravenously). Compositions of the present invention may also be delivered to and/or past the BBB.
In some aspects, the present invention provides delivery (e.g., to, across, and/or past the BBB) of a protein or peptide, including, without limitation, an antibody or antibody fragment, including, but not limited to, a conformation-sensitive antibody or antibody fragment that is directed against one or more of mutated TDP43, beta-amyloid (Aβ), SOD-1, FUS/TLS, α-synuclein, Tau protein, and IAPP, including peptide fragments thereof. In various embodiments, the agent of the invention targets protein aggregates that comprise one or more of mutated and/or misfolded TDP43 and beta-amyloid (Aβ) proteins. In some embodiments, the agents of the invention are conformation-sensitive antibodies directed against the mutated TDP43 and beta-amyloid (Aβ) protein aggregates. In some embodiments, the agents of the invention are conformation-sensitive antibodies directed against the mutated TDP43, beta-amyloid (Aβ), SOD-1, FUS/TLS, α-synuclein, Tau protein, and IAPP protein aggregates, including peptide fragments thereof.
In some aspects, the present invention provides a method of constructing an expression vector encoding said sequences. In some embodiments, the vector is based on the pUC high copy derived from pBR322. In further embodiments, the vector comprises a Synapsin promoter that promotes expression in neurons. In still further embodiments, the vector comprises a CAG promoter that promotes expression in endothelial cells. In some embodiments, the vector comprises a peptide used for neuronal targeting (e.g., directed against ApoE4). In further embodiments, the expression vectors of the present invention comprise an amino acid sequence that expresses insulin. In some embodiments, the insulin sequence promotes the export of the expressed antibodies.
In some aspects, the present invention provides for transfection of the autologous microvascular endothelial cells (e.g., autologous brain microvascular endothelial cells or microvascular endothelial cells derived from bone marrow, or precursors thereof) with any one of the aforementioned nucleic acid expression vectors that encode the therapeutic protein or peptide, including, without limitation, an antibody or antibody fragment. In some embodiments, the transfection is performed via electroporation. In some embodiments, transfection involves the use of a cationic lipid, including but not limited to, lipofectine and lipofectamine.
In some embodiments, the present invention provides for making a microvascular endothelial cell that is suitable for delivery of protein or peptide or antibody or antibody fragment agents across the BBB. In some embodiments, the present invention provides for making a microvascular endothelial cell that is suitable for delivery of protein or peptide or antibody or antibody fragment agents to and/or past the BBB.
In some aspects, the present invention relates to a method for delivering a protein or peptide, including, without limitation, an antibody or antibody fragment, across the BBB. In further aspects, the present invention relates to a method for delivering a protein or peptide, including, without limitation, an antibody or antibody fragment, to and/or past the BBB. In some aspects, the present invention relates to a method for delivering a protein or peptide, including, without limitation, an antibody or antibody fragment, across the BBB (or to and/or past the BBB) and cause an about 2-fold, or about a 3-fold, or about a 4-fold, or about a 5-fold, or about a 10-fold, or about a 30-fold, or about a 100-fold, or about a 300-fold, or about a 500-fold, or about a 1,000-fold increase in crossing the BBB, relative to a protein or peptide, including, without limitation, an antibody or antibody fragment, not delivered using the present methods (e.g., without a endothelial cell delivery, e.g. upon administration of a “naked” antibody or antibody fragment). In embodiments, the protein or peptide, including, without limitation, the antibody or antibody fragment, crosses the BBB by either a paracellular pathway or a transcellular pathway.
In some aspects, the present invention relates to a method delivering a protein or peptide, including, without limitation, an antibody or antibody fragment, e.g. across one or more brain microvascular endothelial cells, pericytes, astrocytes, tight junctions, neurons, and basal membrane.
In some aspects, the present invention relates to a method of treating a neurodegenerative disorder and/or Type 2 diabetes mellitus by administering a therapeutically effective amount of an agent of the invention, e.g. the autologous transfected cells, to a patient in need thereof. Such administration may be one or more of the agents of the invention targeting mutated TDP43, beta-amyloid (Aβ), SOD-1, FUS/TLS, α-synuclein, Tau protein, and IAPP (e.g. a cocktail of antibodies). In some embodiments, such administration comprises autologous microvascular endothelial cells that are transfected with a nucleic acid vector encoding one or more antibodies directed against TDP43, beta-amyloid (Aβ), SOD-1, FUS/TLS, α-synuclein, Tau protein, and IAPP. In other embodiments, the invention includes vectors that encode one or more antibodies directed against TDP43, beta-amyloid (Aβ), SOD-1, FUS/TLS, α-synuclein, Tau protein, and IAPP.
In some aspects, the invention provides for pharmaceutical compositions comprising cell-based gene therapies comprising autologous cells transfected with nucleic acid vectors encoding conformation-sensitive antibodies directed against the mutated TDP43, beta-amyloid (Aβ), SOD-1, FUS/TLS, α-synuclein, Tau protein, and IAPP protein aggregates, in a pharmaceutically or physiologically accepted carrier.
In some aspects, the present invention relates to a method of treating a neurodegenerative disorder by administering an effective amount of an agent (e.g., autologous transfected cells comprising nucleic acid vectors encoding conformation-sensitive antibodies directed against the mutated TDP43, beta-amyloid (Aβ), SOD-1, FUS/TLS, α-synuclein, Tau protein, and IAPP protein aggregates) of the invention to a patient in need thereof by using his own endothelial cells. Indeed, the present invention contemplates, in some embodiments, the use of autologous transfected microvascular endothelial cells for the treatment of a neurodegenerative disorder by reintroduction at the BBB via IA or IV injection.
In some embodiments, the agent of the invention is administered to the patient via inferior alveolar injection or intravenous injection. In some embodiments, the transfected cells are delivered to and/or past the blood brain barrier (BBB) of said patients in need thereof. In further embodiments, the transfected cells are early precursors such that they exhibit homing to and/or past the BBB. In some embodiments, the cells are administered so that they are allowed to cross the BBB. In further embodiments, the transfected cells insert into the apical surface of the BBB and release proteins, peptides, antibodies, and/or antigen presenting fragments to the basolateral side of the BBB. In such embodiments, the proteins, peptides, antibodies, and/or antigen presenting fragments are delivered to the brain parenchyma and/or microvasculature. In some embodiments, the present invention provides for the use of organ-specific and/or early progenitors of endothelial cells in order to transport cells comprising vectors encoding therapeutic proteins or peptides, including, without limitation, antibodies or antibody fragments into the brain. In further embodiments, the present invention provides for the use of homing properties of endothelial cells (e.g., precursors) to transfer agents of the invention in an organo-specific manner.
In specific embodiments, the present methods of making or treatment relate to the transfection of microvascular endothelial cells with nucleic acids (optionally codon optimized) encoding antibodies (or Fab fragments) directed against TDP43 and beta-amyloid (Aβ), e.g. as defined by SEQ ID NOs: 13 and 14 or SEQ ID Nos: 94 and 31.
In specific embodiments, the present invention provides for treatment of ALS by delivering to a subject a microvascular endothelial cell having a nucleic acid (optionally codon optimized) encoding an antibody (or Fab fragment) directed against TDP43, e.g. as defined by SEQ ID NOs: 13 and 14.
In specific embodiments, the present invention provides for treatment of Alzheimer's disease by delivering to a subject a microvascular endothelial cell having a nucleic acid (optionally codon optimized) encoding an antibody (or Fab fragment) directed against Aβ, e.g. as defined by SEQ ID Nos: 94 and 31.
In some embodiments, the present invention can be used to repair the BBB, e.g., in diseases like Alzheimer Disease (AD) and Amyotrophic Lateral Sclerosis (ALS). In other embodiments, the present invention allows for the repair of BBB as well as release of antibodies or antibody fragments by the BBB without damaging the BBB and its functions.
In some embodiments, the present invention relates to the repair of cellular damage in tumors, diabetes II, heart attack, myocardial infarction, stroke, respiratory insufficiency, etc.
In some embodiments, the present invention is used for repair of angiogenesis in retina, repair of wounds caused by a deficient blood supply (diabetes foot), repair of myocardial tissue after heart attack, vessel normalization in case of pathological tumor angiogenesis, skin diseases, etc.
Other aspects and embodiments of the invention will be apparent from the following detailed description.
The present invention is based, in part, on the discovery that proteins or peptides, including, without limitation, antibodies directed against one or more of mutated protein aggregates associated with various neurodegenerative diseases can be delivered to the brain via microvascular endothelial cells (e.g., from the CNS) comprising nucleic acid vectors encoding such proteins or antibodies. In some embodiments, the microvascular endothelial cell, or precursor thereof, is engineered to release a therapeutic protein or peptide, including, without limitation, an antibody or antibody fragment, at a site of therapeutic action (e.g., a neuron, the CNS, or the brain).
In certain aspects, the present invention provides for the use of microvascular endothelial cells (e.g., from the CNS or the brain) to deliver therapeutic proteins or peptides, including, without limitation, antibodies, or fragments thereof, to therapeutic sites of action (e.g., the blood brain barrier and neurons). Microvascular endothelial cells transfected ex vivo with nucleic acid vectors encoding such proteins, including therapeutic antibodies, can be delivered to and/or past the blood brain barrier (BBB), which acts as a highly specialized structural and biochemical barrier that regulates the entry of blood-borne molecules into brain, and preserves ionic homeostasis within the brain microenvironment. Indeed, BBB properties are primarily determined by junctional complexes between the cerebral endothelial cells. In some embodiments, the endothelial cells, transfected ex vivo are collected from the patient's blood.
In addition, the present invention provides for neuronal targeting via a targeting element, including, but not limited to, an additional peptide directed against ApoE4. The present invention further contemplates the use of homing properties of microvascular endothelial cells (or precursors thereof) to transfer molecules in an organospecific manner. In further embodiments, the expression vectors of the present invention comprise an amino acid sequence that expresses insulin. In such embodiments, the insulin sequence promotes the export of the expressed antibodies. In some embodiments, administration of the aforementioned cell-based therapies occurs via inferior alveolar (IA) and/or intravenous (IV) injection in order to allow the cells to cross the BBB.
In some aspects, the present invention provides for antibodies directed against one or more of mutated SOD-1, TDP43 and FUS/TLS protein aggregates are useful in treating ALS by, for example, solubilizing the protein aggregates and preventing their spreading to motor neurons. In some aspects, the present invention provides for antibodies directed against mutated beta-amyloid (Aβ) protein aggregates are useful in treating Alzheimer's disease by, for example, solubilizing the protein aggregates and interaction with amyloid oligomers.
The present invention is also based, in part, on the discovery that antibodies directed against one or more of the amyloid protein of TDP43, beta-amyloid (Aβ), SOD-1, FUS/TLS, α-synuclein, Tau protein, and IAPP, protein aggregates are useful in treating ALS by, for example, solubilizing the protein aggregates and preventing their spreading to motor neurons. Similarly, antibodies directed against one or more of the amyloid protein of IAPP protein aggregates is useful in treating type II diabetes mellitus.
In various aspects, the present agent of the invention is a cell, for example a microvascular endothelial cell, or precursor thereof, engineered to release a therapeutic protein or peptide, including, without limitation, an antibody or antibody fragment, at a site of therapeutic action. In various embodiments, the therapeutic protein or peptide, including, without limitation, the antibody or antibody fragment, is directed against one or more mutated protein selected from TDP43, beta-amyloid (Aβ), SOD-1, FUS/TLS, α-synuclein, Tau protein, and IAPP. Accordingly, the present invention provides for methods of treating and/or preventing one or more neurodegenerative disorders selected from Parkinson's disease, Huntington's disease, Alzheimer's disease, fronto-temporal lobar degeneration (FTLD) and Amyotrophic Lateral Sclerosis (ALS).
Microvascular Endothelial Cells
The present invention provides for the use of microvascular endothelial cells (or progenitors/precursors thereof) as vehicles for transporting and delivering therapeutic proteins or peptides, including, without limitation, antibodies, to sites of action, such as, but not limited to, the brain, the neuron, and the CNS. The microvascular endothelial cells can be derived from the bone marrow, brain, the CNS, the heart, the liver, the pancreas, etc. Certain properties of such microvascular endothelial cells allow for organospecific delivery of the molecules of the present invention.
Brain microvascular endothelial cells (BMEC), the major component of the blood-brain barrier, limit the passage of soluble and cellular substances from the blood into the brain. BMEC have unique features to distinguish themselves from those of peripheral endothelial cells, such as 1) intercellular tight junctions that display high electrical resistance and slow paracellular flux, 2) the absence of fenestrae and a reduced level of pinocytic activity, and 3) asymmetrically-localized enzymes and carrier-mediated transport systems. Similar to peripheral endothelial cells, BMEC express, or can be induced to express, cell adhesion molecules on their surface that regulate the extravasation of leukocytes into the brain. BMEC have been widely used for studying the molecular and cellular properties of blood-brain barrier because of their unique functions.
The present invention also includes cells that are precursors of endothelial cells, and in some embodiments, does not include embryonic stem cells, as described in U.S. Pat. No. 9,631,117, which is hereby incorporated by reference in its entirety. In some embodiments, the cells of the present invention include lines of isolated human cells that are precursors of endothelial cells and established cell lines of isolated cells that are precursors of endothelial cells. These cells include isolated human endothelial cell precursor cells, and murine endothelial cell precursor cells. In some embodiments, the cells are immortalized cells or established cell lines, i.e. immortalized, stable, nontumorigenic cell lines whose characteristics are identical from one generation to another. The present invention also relates to an isolated human endothelial cell precursor cell, other than embryonic stem cells, comprising the clusters of differentiation (CD) 133, 13, 271, 90 202b, 309, 146, 105 and 143; and not comprising the clusters of differentiation CD31 and CD45.
In some embodiments, the cells include cells deposited under the Budapest Treaty at the National Collection of Cultures of Microorganisms (Collection Nationale de Cultures de Microorganismes, CNCM), Institut Pasteur, 25 rue du Docteur Roux, 75724 Paris cedex 15, France. These are, for example, isolated human cells that are endothelial cell precursors other than embryonic stem cells deposited at the Collection Nationale de Cultures de Microorganismes (CNCM), Institut Pasteur, 25 rue du Docteur Roux, 75724 Paris cedex 15, France on Aug. 18, 2009 under CNCM numbers No. 1-4220 (HucPEC 55.1) and No. 1-4221 (HucPEC 55.2).
In some embodiments, the cells include isolated human cells that are endothelial cell precursors isolated from cord blood. The endothelial cell precursors are selected from HEPC.CB1 and HEPC.CB2. See Paprocka, et al. “CD133 positive progenitor endothelial cell lines from human cord blood,” Cytometry A. 2011 August; 79(8):594-602. doi: 10.1002/cyto.a.21092, the entire contents of which are hereby incorporated in their entirety.
In other embodiments, the cells of the present invention include isolated murine cells that are endothelial cell precursors. In particular, the cells can be isolated murine cell that is a precursor of endothelial cells, other than embryonic stem cells, deposited at the Collection Nationale de Cultures de Microorganismes (CNCM), Institut Pasteur, 25 rue du Docteur Roux, 75724 Paris cedex 15, France on Aug. 18, 2009 under CNCM numbers No. I-4222 (MAgEC 10.5) and No. I-4223 (MagEC 11.5).
The present invention includes isolated cells that are capable of targeting pathological sites as well as regenerating new endothelial tissues at the targeted sites. In some embodiments, the cells according to the invention, are capable of specifically targeting tumors and/or injured tissues. Thus, in some embodiments, the cells of the invention can supply therapeutic molecules and/or genes at pathological sites.
In some aspects, the present agent of the invention is a cell, for example, a microvascular endothelial cell, or precursor thereof, engineered to release a therapeutic protein or peptide, including, without limitation, an antibody or antibody fragment, at a site of therapeutic action. In some aspects, the present agent of the invention is a cell, for example, a microvascular endothelial cell, or precursor thereof, engineered to release a therapeutic protein or peptide, including, without limitation, an antibody or antibody fragment in spinal cord motor neurons or glial cells.
In various embodiments, the site of therapeutic action is one or more of the CNS, brain, spinal cord, glial cells, neurons in the hippocampus and habenular nuclei, and astrocytes. In various embodiments, the pathological site is one or more of the CNS, brain, spinal cord, glial cells, neurons in the hippocampus and habenular nuclei, and astrocytes.
The engineered cell comprises, in some embodiments, a nucleic acid expression vector having one or more nucleic acid sequences selected from SEQ ID Nos: 1-12 or a variant thereof (e.g. one or more nucleic acid sequences having about 90%, or about 93%, or about 95%, or about 97%, or about 98%, or about 99% sequence identity with one of SEQ ID Nos: 1-6). In various embodiments, the DNA sequences encode variable heavy and variable light chain domains. For example, the DNA sequences can encode, for each chain, a variable domain, a signal peptide, and/or a constant domain.
The engineered cell comprises, in some embodiments, a nucleic acid expression vector having one or more amino acid sequences selected from SEQ ID NOs: 13 and 14.
The engineered cell comprises, in some embodiments, a nucleic acid expression vector having one or more amino acid sequences selected from SEQ ID NOs: 94 and 31.
The engineered cell comprises, in some embodiments, a nucleic acid expression vector of any one of SEQ ID Nos: 83-93 or a variant thereof (e.g. one or more nucleic acid sequences having about 90%, or about 93%, or about 95%, or about 97%, or about 98%, or about 99% sequence identity with one of SEQ ID NOs: 83-93). In some embodiments, the cell comprises a vector of any one of
In some embodiments, the DNA sequence encoding a variable heavy chain of the anti-TDP43 antibody of the present invention has at least 65%, at least 70%, at least 75%, at least 80%, at least 85%, at least 90%, at least 95%, at least 96%, at least 97%, at least 98%, or at least 99% sequence identity to SEQ ID NO: 1:
In some embodiments, the DNA sequence encoding a signal peptide of the variable heavy chain of the anti-TDP43 antibody of the present invention has at least 65%, at least 70%, at least 75%, at least 80%, at least 85%, at least 90%, at least 95%, at least 96%, at least 97%, at least 98%, or at least 99% sequence identity to SEQ ID NO: 2:
In some embodiments, the DNA sequence encoding a constant domain of the variable heavy chain of the anti-TDP43 antibody of the present invention has at least 65%, at least 70%, at least 75%, at least 80%, at least 85%, at least 90%, at least 95%, at least 96%, at least 97%, at least 98%, or at least 99% sequence identity to SEQ ID NO: 3:
In some embodiments, the DNA sequence encoding a variable light chain of the anti-TDP43 antibody of the present invention has at least 65%, at least 70%, at least 75%, at least 80%, at least 85%, at least 90%, at least 95%, at least 96%, at least 97%, at least 98%, or at least 99% sequence identity to SEQ ID NO: 4:
In some embodiments, the DNA sequence encoding a signal peptide of the variable light chain of the anti-TDP43 antibody of the present invention has at least 65%, at least 70%, at least 75%, at least 80%, at least 85%, at least 90%, at least 95%, at least 96%, at least 97%, at least 98%, or at least 99% sequence identity to SEQ ID NO: 5:
In some embodiments, the DNA sequence encoding a constant domain of the variable light chain of the anti-TDP43 antibody of the present invention has at least 65%, at least 70%, at least 75%, at least 80%, at least 85%, at least 90%, at least 95%, at least 96%, at least 97%, at least 98%, or at least 99% sequence identity to SEQ ID NO: 6:
In some embodiments, the DNA sequence encoding a variable heavy chain of the beta-amyloid antibody of the present invention has at least 65%, at least 70%, at least 75%, at least 80%, at least 85%, at least 90%, at least 95%, at least 96%, at least 97%, at least 98%, or at least 99% sequence identity to SEQ ID NO: 7:
In some embodiments, the DNA sequence encoding a variable light chain of the beta-amyloid antibody of the present invention has at least 65%, at least 70%, at least 75%, at least 80%, at least 85%, at least 90%, at least 95%, at least 96%, at least 97%, at least 98%, or at least 99% sequence identity to SEQ ID NO: 8:
In some embodiments, the DNA sequence encoding a constant heavy chain of the beta-amyloid antibody of the present invention has at least 65%, at least 70%, at least 75%, at least 80%, at least 85%, at least 90%, at least 95%, at least 96%, at least 97%, at least 98%, or at least 99% sequence identity to SEQ ID NO: 9:
In some embodiments, the DNA sequence encoding a constant light chain the beta-amyloid antibody of the present invention has at least 65%, at least 70%, at least 75%, at least 80%, at least 85%, at least 90%, at least 95%, at least 96%, at least 97%, at least 98%, or at least 99% sequence identity to SEQ ID NO: 10:
In some embodiments, the DNA sequence encoding a signal peptide of the heavy chain of the beta-amyloid antibody of the present invention has at least 65%, at least 70%, at least 75%, at least 80%, at least 85%, at least 90%, at least 95%, at least 96%, at least 97%, at least 98%, or at least 99% sequence identity to SEQ ID NO: 11:
In some embodiments, the DNA sequence encoding a signal peptide of the light chain of the beta-amyloid antibody of the present invention has at least 65%, at least 70%, at least 75%, at least 80%, at least 85%, at least 90%, at least 95%, at least 96%, at least 97%, at least 98%, or at least 99% sequence identity to SEQ ID NO: 12:
Therapeutic Proteins or Peptides, Including Antibodies or Fragments Thereof
In embodiments, the therapeutic proteins or peptides find use in a gene replacement therapy, e.g. delivery of a wild type protein or peptide to a subject bearing a mutant form of the protein or peptide, which is associated with a disease. For instance, the present endothelial cells can be transfected or transformed with a vector, e.g. those described herein, being a wild type or otherwise non-defective protein or peptide and such cell can be delivered to a subject bearing a mutant form of the protein or peptide, which is associated with a disease. In embodiments, the therapeutic protein or peptide is selected from nerve growth factor (NGF, e.g. without limitation for use in treating Alzheimer's), apolipoprotein E (ApoE, e.g. ApoE1, ApoE2, ApoE3, and ApoE4, e.g. without limitation for use in treating Alzheimer's), survival motor neuron 1 (SMN1, e.g. without limitation for use in treating SMA), almitoyl-protein thioesterase 1 (PPT1 e.g., without limitation for use in treating CLN1 disease), CLN3/battenin (e.g., without limitation for use in treating CLN3 disease), CLN6 (e.g., without limitation for use in treating CLN6 disease), CLN8 (e.g., without limitation for use in treating CLN8 disease), huntingtin (e.g., without limitation for use in treating Huntington's Disease), ASAP (e.g., without limitation for use in treating Canavan disease), neurturin, GDNF, BDNF, CDNF, VEGF-A (e.g., without limitation for use in treating Parkinson's), MECP2 (e.g., without limitation for use in treating Rett Syndrome), beta-galactosidase β-galactosidase, e.g., without limitation for use in treating GM-1 gangliosidoses), aromatic L-amino acid decarboxylase (AADC, e.g., without limitation for use in treating Parkinson's Disease), SOD-1 (e.g., without limitation for use in treating ALS), TDP43 (e.g., without limitation for use in treating ALS), beta-amyloid (Aβ, e.g. without limitation for use in treating Alzheimer's disease), FUS/TLS (e.g., without limitation for use in treating ALS), α-synuclein (e.g., without limitation for use in treating Parkinson's), Tau protein (e.g. without limitation for use in treating Alzheimer's disease), and IAPP (e.g. without limitation for use in treating Alzheimer's disease).
In some aspects, the present agent of the invention is a protein or peptide, including, without limitation, an antibody, or fragment thereof (e.g., Fab fragment), that is directed against one or more of mutated TDP43, beta-amyloid (Aβ), SOD-1, FUS/TLS, α-synuclein, Tau protein, and IAPP, optionally in the context of protein aggregates. In various embodiments, the agent of the invention targets protein aggregates that comprise one or more of mutated TDP43, beta-amyloid (Aβ), SOD-1, FUS/TLS, α-synuclein, Tau protein, and IAPP proteins. In some embodiments, the agents of the invention are conformation-sensitive antibodies directed against the mutated TDP43, beta-amyloid (Aβ), SOD-1, FUS/TLS, α-synuclein, Tau protein, and IAPP protein aggregates. In various embodiments the present antibodies solubilize the intra- or extra-cellular protein aggregates and therefore prevent or reduce their spreading.
In some aspects, the present invention agent of the invention is an antibody, or fragment thereof (e.g., Fab fragment), that is directed against one or more of mutated TDP43, beta-amyloid (Aβ), SOD-1, FUS/TLS, α-synuclein, Tau protein, and IAPP, optionally in the context of protein aggregates. In various embodiments, the agent of the invention targets protein aggregates that comprise one or more of mutated TDP43, beta-amyloid (Aβ), SOD-1, FUS/TLS, α-synuclein, Tau protein, and IAPP. In some embodiments, the agents of the invention are conformation-sensitive antibodies directed against the mutated TDP43, beta-amyloid (Aβ), SOD-1, FUS/TLS, α-synuclein, Tau protein, and IAPP protein aggregates.
In some embodiments, the present invention provides for an antibody, or Fab, directed against wild type or mutant TDP43, or peptide fragment. In various embodiments, the antibody, or Fab, comprises a heavy chain and/or a light chain, which are identified based on the sequence of the constant domain (e.g., mouse IgG1, rat kappa, etc.). The antibody, or Fab, can comprise, for each chain, a variable domain, a signal peptide, and/or a constant domain. In some embodiments, the antibody, or Fab, of the present invention comprises a variable heavy domain that comprises a peptide having an amino acid sequence at least 65%, at least 70%, at least 75%, at least 80%, at least 85%, at least 90%, at least 95%, at least 96%, at least 97%, at least 98%, or at least 99% identical to SEQ ID NO: 13:
In some embodiments, the antibody, or Fab, of the present invention comprises a variable light domain that comprises a peptide having an amino acid sequence at least 65%, at least 70%, at least 75%, at least 80%, at least 85%, at least 90%, at least 95%, at least 96%, at least 97%, at least 98%, or at least 99% identical to SEQ ID NO: 14:
In various embodiments, the antibody, or Fab, of the present invention comprises a constant domain that comprises a peptide having an amino acid sequence at least 65%, at least 70%, at least 75%, at least 80%, at least 85%, at least 90%, at least 95%, at least 96%, at least 97%, at least 98%, or at least 99% identical to SEQ ID NO: 15 and/or SEQ ID NO: 16:
In some embodiments, the antibody, or Fab, of the present invention comprises a signal peptide comprising a peptide having amino acid sequence identity to SEQ ID NO: 17 and/or SEQ ID NO: 18: MEWIWIFLFILSGTAGVQS (SEQ ID NO: 17), and/or MAWISLILSLLALSSGAIS (SEQ ID NO: 18). In various embodiments, the signal peptide comprises an amino acid sequence having one or more amino acid mutations. In various embodiments, the signal peptide comprises an amino acid sequence having one, or two, or three, or four, or five, or six, or seven, or eight, or nine, or ten amino acid mutations. In some embodiments, the one or more amino acid mutations may be independently selected from substitutions, insertions, deletions, and truncations. In some embodiments, the amino acid mutations are amino acid substitutions, and may include conservative and/or non-conservative substitutions.
In further embodiments, the present invention contemplates an antibody, or Fab, comprising one or more complementarity-determining regions (CDR) for the variable heavy and/or variable light domains. In some embodiments, the CDRs are presented in Kabat definition. In various embodiments, the CDR comprises an amino acid sequence having one or more amino acid mutations. In various embodiments, the CDR comprises an amino acid sequence having one, or two, or three, or four, or five, or six, or seven, or eight, or nine, or ten amino acid mutations. In some embodiments, the one or more amino acid mutations may be independently selected from substitutions, insertions, deletions, and truncations. In some embodiments, the amino acid mutations are amino acid substitutions, and may include conservative and/or non-conservative substitutions. In further embodiments, the variable heavy domain comprises a CDR1 having an amino acid sequence of SEQ ID NO: 19. In further embodiments, the variable heavy domain comprises a CDR2 having an amino acid sequence of SEQ ID NO: 20. In still further embodiments, the variable heavy domain comprises a CDR3 having an amino acid sequence of SEQ ID NO: 21. In some embodiments, the antibody, or Fab, of the present invention comprises CDR1: SYGIS (SEQ ID NO: 19); CDR2: EIYPRRGNTYYNEKFKG (SEQ ID NO: 20); and/or CDR3: GGIYYGNLFDY (SEQ ID NO: 21). In some embodiments, the variable light domain comprises a CDR1 having an amino acid sequence of SEQ ID NO: 22. In further embodiments, the variable heavy domain comprises a CDR2 having an amino acid sequence of SEQ ID NO: 23. In still further embodiments, the variable heavy domain comprises a CDR3 having an amino acid sequence of SEQ ID NO: 24. In some embodiments, the antibody, or Fab, of the present invention comprises CDR1: RSSTGAVTTSNYAN (SEQ ID NO: 22); CDR2: GTNNRAP (SEQ ID NO: 23); and/or CDR3: ALWFSNHWV (SEQ ID NO: 24).
Amyotrophic Lateral Sclerosis (ALS)
ALS is a neurodegenerative condition that targets primarily motor neurons, resulting in progressive paralysis and death within a few years from onset. Just like Alzheimer's, Parkinson's and other neurodegenerative disease, a proportion (˜10%) of ALS is dominantly inherited, with the remaining 90% (referred to as sporadic) of unknown origin. The identification in 1993 of mutation in the gene encoding superoxide dismutase 1 (SOD-1) as the first or second most common form of inherited ALS, and subsequent generation of transgenic mice expressing ALS-causing mutants in SOD1, initiated the molecular era of deciphering disease mechanism. A flurry of approaches established that non-cell autonomous disease depends on one or more toxic properties of mutant SOD-1. The latter drives disease initiation when synthesized within motor neurons while its synthesis by glial neighbors provokes rapid disease advance. Along with prion-infected mice, the ALS-linked mutant SOD-1 mice are among the most faithful model of neuro-degeneration, recapitulating the selective progressive loss of motor neurons that leads to the paralysis characteristic of human ALS.
In both inherited and sporadic ALS, affected neurons and glial cells contain abnormal proteinaceous accumulations, often labeled by anti-ubiquitin antibodies. The major protein component of these accumulations in familial cases with SOD-1 mutations, and in mutant sporadic disease has recently been challenged. This controversy notwithstanding, over the past five years it has been established that a main component of proteinaceous cytoplasmic inclusions in essentially all sporadic ALS cases is the RNA/DNA-binding protein TDP43, accompanied by its nuclear depletion. Moreover, mutations in TDP43 are causes of inherited ALS and rare instances of FTLD.
Affected neurons of patients with TDP43 mutations also develop cytoplasmic TDP43-positive inclusions and nuclear loss, implying that abnormal localization and aggregation of TDP43 could represent a first mechanistic link between sporadic ALS and an inherited form caused by a known mutation. Furthermore, ALS-causing mutations were identified in a gene encoding another RNA/DNA-binding protein, called FUS/TLS for fused in sarcoma or translocated in liposarcoma. FUS-mutant mediated disease is also accompanied by FUS/TLS-containing cytoplasmic inclusions and disturbed subcellular localization. Unresolved is whether pathogenesis in TDP43- or FUS/TLS-mediated disease results from a loss of nuclear function of either protein, from a gain of toxic property(ies) associated (or not) with the cytoplasmic inclusions, or—perhaps most likely, from a combination of all possibilities.
SOD-1 is a small 153-amino acid protein, which in its native state occurs as a remarkably stable dimmer that is highly resistant to proteolytic degradation. ALS-associated point mutations occur in almost every position (>140 mutations are known) with each leading to destabilization and eventually accumulation of misfolded species within affected cells of the nervous system. In vitro studies with purified SOD-1 have shown that both the wild-type and several mutant versions of the protein spontaneously fibrillize under denaturing conditions with propensity to aggregate that is enhanced in the mutants.
In various embodiments, present agents are raised against and/or target a peptide. In various embodiments, peptide refers to a series of residues, typically L-amino acids, connected one to the other typically by peptide bonds between the α-amino and carboxyl groups of adjacent amino acids. The term includes modified peptides and synthetic peptide analogues. In various embodiments, the peptide epitope of the invention comprises a sequence as set out in any of the preceding statements of the invention and consists of 6 to 18 amino acids. In various embodiments, the peptide consists of 8, 9, 10, 11, 12, 13, 14, 15, 16, 17 or 18 amino acids. For example, the peptide epitope may comprise a sequence of 8 to 12 amino acids or 8 to 10 amino acids. It is understood by those in the art that other fragments of proteins and peptides disclosed herein, such as amino-truncated, carboxy-truncated, or internal deletions, or any combination of these, as well as conservative variants of these peptides, may be employed in this invention.
In various embodiments, the present agents target a mutated protein comprising one or more mutations of Table 1, optionally in the context of a protein aggregate. For instance, the present agents may be an antibody targeting a protein bearing one or more mutations of Table 1, optionally in the context of a protein aggregate.
In various embodiments, the present agents target a mutated protein comprising one or more mutations of Table 1, optionally in the context of a protein aggregate. For instance, the present agents may be conformation-specific antibodies targeting a protein bearing one or more mutations of Table 1, optionally in the context of a protein aggregate.
In various embodiments, the present agents target mutated SOD-1, optionally in the context of a protein aggregate. In some embodiments, the mutated SOD-1 comprises the A4V mutation. In some embodiments, the mutated SOD-1 comprises an SOD-1 mutation of Table 1.
Mutations of TAR DNA binding protein 43 (TDP43) cause a dominant form of ALS. The normal role of the TDP43 protein includes binding to RNA, the genetic messenger molecule. Mutations in the TDP43 gene cause the TDP43 protein to mislocalize in motor neurons, away from the nucleus where it is normally found, and into the cytoplasm, where it aggregates into clumps that can be seen under the microscope. Even in ALS not caused by TDP43 mutations, the protein is found in these aggregates, suggesting it may play a pivotal role in many forms of ALS.
In various embodiments, the present agents target mutated TDP43, optionally in the context of a protein aggregate. In various embodiments, the present agents target mutated ALS10 (TARDBP). Mutations of TARDBP include: p.Gly298Ser, p.Ala315Thr, p.Ala382Thr, p.Met337Val, p.Gly348Cys, p.Gly287Ser, p.Gly294Val, and p.Ala382Thr.
The human TDP43 protein is made of 414 amino acids and is encoded by the TARDBP gene. The amino acid sequence of human TDP43 is shown by SEQ ID NO: 25.
In various embodiments, the present antibodies are directed to/or raised against a peptide comprising part of wild type or mutant TDP43, including stretches of amino acids of SEQ ID NO: 25.
In various embodiments, the present agents of conformation-sensitive antibodies target the following peptide sequences of amyloid TDP43, including but not limited to SEQ ID Nos: 26-28.
In various embodiments, the present antibodies are directed to/or raised against a peptide comprising part or all of the amino acids of SEQ ID Nos: 26-28.
In some embodiments, the present invention provides for an antibody, or Fab, directed against wild type or mutant TDP43, or peptide fragment. In various embodiments, the antibody, or Fab, comprises a heavy chain and/or a light chain, which are identified based on the sequence of the constant domain (e.g., mouse IgG1, rat kappa, etc.). The antibody, or Fab, can comprise, for each chain, a variable domain, a signal peptide, and/or a constant domain. In some embodiments, the antibody, or Fab, of the present invention comprises a variable heavy domain that comprises a peptide having an amino acid sequence at least 65%, at least 70%, at least 75%, at least 80%, at least 85%, at least 90%, at least 95%, at least 96%, at least 97%, at least 98%, or at least 99% identical to SEQ ID NO: 13.
In some embodiments, the antibody, or Fab, of the present invention comprises a variable light domain that comprises a peptide having an amino acid sequence at least 65%, at least 70%, at least 75%, at least 80%, at least 85%, at least 90%, at least 95%, at least 96%, at least 97%, at least 98%, or at least 99% identical to SEQ ID NO: 14.
In various embodiments, the antibody, or Fab, of the present invention comprises a constant domain that comprises a peptide having an amino acid sequence at least 65%, at least 70%, at least 75%, at least 80%, at least 85%, at least 90%, at least 95%, at least 96%, at least 97%, at least 98%, or at least 99% identical to SEQ ID NO: 15 and/or SEQ ID NO: 16.
In some embodiments, the antibody, or Fab, of the present invention comprises a signal peptide comprising a peptide having amino acid sequence identity to SEQ ID NO: 17 and/or SEQ ID NO: 18: MEWIWIFLFILSGTAGVQS (SEQ ID NO: 17), and/or MAWISLILSLLALSSGAIS (SEQ ID NO: 18). In various embodiments, the signal peptide comprises an amino acid sequence having one or more amino acid mutations. In various embodiments, the signal peptide comprises an amino acid sequence having one, or two, or three, or four, or five, or six, or seven, or eight, or nine, or ten amino acid mutations. In some embodiments, the one or more amino acid mutations may be independently selected from substitutions, insertions, deletions, and truncations. In some embodiments, the amino acid mutations are amino acid substitutions, and may include conservative and/or non-conservative substitutions.
In further embodiments, the present invention contemplates an antibody, or Fab, comprising one or more complementarity-determining regions (CDR) for the variable heavy and/or variable light domains. In some embodiments, the CDRs are presented in Kabat definition. In various embodiments, the CDR comprises an amino acid sequence having one or more amino acid mutations. In various embodiments, the CDR comprises an amino acid sequence having one, or two, or three, or four, or five, or six, or seven, or eight, or nine, or ten amino acid mutations. In some embodiments, the one or more amino acid mutations may be independently selected from substitutions, insertions, deletions, and truncations. In some embodiments, the amino acid mutations are amino acid substitutions, and may include conservative and/or non-conservative substitutions. In further embodiments, the variable heavy domain comprises a CDR1 having an amino acid sequence of SEQ ID NO: 19. In further embodiments, the variable heavy domain comprises a CDR2 having an amino acid sequence of SEQ ID NO: 20. In still further embodiments, the variable heavy domain comprises a CDR3 having an amino acid sequence of SEQ ID NO: 21. In some embodiments, the antibody, or Fab, of the present invention comprises CDR1: SYGIS (SEQ ID NO: 19); CDR2: EIYPRRGNTYYNEKFKG (SEQ ID NO: 20); and/or CDR3: GGIYYGNLFDY (SEQ ID NO: 21). In some embodiments, the variable light domain comprises a CDR1 having an amino acid sequence of SEQ ID NO: 22. In further embodiments, the variable heavy domain comprises a CDR2 having an amino acid sequence of SEQ ID NO: 23. In still further embodiments, the variable heavy domain comprises a CDR3 having an amino acid sequence of SEQ ID NO: 24. In some embodiments, the antibody, or Fab, of the present invention comprises CDR1: RSSTGAVTTSNYAN (SEQ ID NO: 22); CDR2: GTNNRAP (SEQ ID NO: 23); and/or CDR3: ALWFSNHWV (SEQ ID NO: 24). Fused in sarcoma/Translocated in sarcoma (FUS/TLS) is inherited in a dominant manner. It is also an RNA binding protein, and may play a similar normal role in the cell as TDP43. FUS and TDP43 may in fact interact as part of their normal function.
In various embodiments, any FUS/TLS mutations described in Science 27 Feb. 2009: vol. 323 no. 5918 1205-1208, the entire contents of which are hereby incorporated by reference, may be targeted by the present agents.
In various embodiments, the following mutations in the fused in sarcoma/translated in liposarcoma (FUS/TLS) gene on chromosome 16 may be present (base numbering begins with the start codon; amino acid numbering begins with the methionine start codon):
In various embodiments, the present agents target mutated FUS/TLS, optionally in the context of a protein aggregate. In various embodiments, the present antibodies are directed to/or raised against a peptide comprising part of wild type or mutant FUS/TLS.
In various embodiments, the present agents target Ubiquilin-2, including mutants thereof. Ubiquilin-2 resides on the X chromosome. The normal function of the protein is to help degrade damaged or defective proteins in the cell. It is likely that mutations in the gene interfere with this function, and may lead to accumulation of harmful material within the cell. In various embodiments, the present antibodies are directed to/or raised against a peptide comprising part of wild type or mutant ubiquilin-2.
In various embodiments, the present agents are directed to/or raised against a protein bearing mutations in one or more of the following illustrative ALS-related mutations, including peptide fragments thereof:
BBB Delivery
In some aspects, therapies involving cell-based gene agents which effectively deliver therapeutic agents across the BBB are provided. In some aspects, therapies involving cell-based gene agents which effectively deliver therapeutic agents to and/or past the BBB are provided.
In some aspects, the present invention relates to a method of delivering an antibody or antibody fragment across the BBB. In some aspects, the present invention relates to a method delivering an antibody or antibody fragment across the BBB and cause an about 2-fold, or about a 3-fold, or about a 4-fold, or about a 5-fold, or about a 10-fold, or about a 30-fold, or about a 100-fold, or about a 300-fold, or about a 500-fold, or about a 1,000-fold increase in crossing the BBB, relative to an antibody or antibody fragment not delivered using the present methods (e.g. without a endothelial cell delivery, e.g. upon administration of a “naked” antibody or antibody fragment). In embodiments, the antibody or antibody fragment crosses the BBB by either a paracellular pathway or a transcellular pathway.
In some aspects, the present invention relates to a method delivering an antibody or antibody fragment, e.g. across one or more brain microvascular endothelial cells, pericytes, astrocytes, tight junctions, neurons, and basal membrane.
In embodiments, the present invention provides delivery of an antibody or antibody fragment, e.g. across the BBB, including, but not limited to, an antibody or antibody fragment that is directed against one or more of mutated TDP43, beta-amyloid (Aβ), SOD-1, FUS/TLS, α-synuclein, Tau protein, and IAPP, including peptide fragments thereof, inclusive of a Fab having SEQ ID Nos: 13 and 14 and/or CDRs of SEQ ID Nos: 19-24 and/or SEQ ID Nos: 94 and 31 and/or CDRs of SEQ ID Nos: 36-38 and 39-41.
In some embodiments, the use of autologous transfected microvascular endothelial cells for the treatment of a neurodegenerative disorder by reintroduction at and/or past the BBB via IA or IV injection.
In some embodiments, the agent of the invention is administered to the patient via inferior alveolar injection or intravenous injection. In some embodiments, the transfected cells are delivered to the blood brain barrier (BBB) of said patients in need thereof. In further embodiments, the transfected cells are early precursors such that they exhibit homing to and/or past the BBB. In some embodiments, the cells are administered so that they are allowed to cross the BBB. In some embodiments, the present invention provides for the use of organ-specific and/or early progenitors of endothelial cells in order to transport cells comprising vectors encoding therapeutic antibodies or antibody fragments into the brain. In further embodiments, the present invention provides for the use of homing properties of endothelial cells (e.g., precursors) to transfer agents of the invention in an organo-specific manner.
In such embodiments, the insulin sequence promotes the export of the expressed antibodies. In some embodiments, administration of the aforementioned cell-based therapies occurs via inferior alveolar (IA) and/or intravenous (IV) injection in order to allow the cells to cross the BBB.
In various embodiments, the present cells, administered peripherally, cross the blood brain barrier and cause substantial release of therapeutic antibodies or antibody fragments. In embodiments, this effect is obtained without the need of using blood-brain barrier disrupting agents. Hyperthermia, mannitol, bradykinin and NS1619 are illustrative blood-brain barrier disrupting agents.
Accordingly, in a particular embodiment, the invention relates to use or method as described herein, comprising peripheral administration of the present cells, wherein no blood-brain barrier disrupting agent is implemented. Furthermore, the invention relates to a use or method as described herein, wherein no mannitol is injected to the subject.
Alternatively, in embodiments, the invention relates to a use or method as described herein, further comprising disruption of the blood-brain barrier with a blood-brain barrier disrupting agent or process, to further increase the crossing of the cells or therapeutic antibodies implemented in the present invention through the blood-brain barrier.
Alzheimer's Disease
Proteinaceous deposits (called amyloid) appear as neurofibrillary tangles, amyloid plaque cores, and amyloid of the congophilic angiopathy in Alzheimer's disease. Beta-amyloid (Aβ) peptide naturally occurs as a series of peptides which are 39 to 43 amino acids long, with the shorter, more soluble forms being present in cerebrovascular deposits and the longer forms being found primarily in senile plaques. F. Prelli, et al. Journal of Neurochemistry, 51:648-651 (1988). Indeed, beta-amyloid is a small piece of a larger protein called “amyloid precursor protein” (APP). When APP is activated to do its normal job, it is cut by other proteins into separate, smaller sections that stay inside and outside of cells. In some circumstances, APP is cut in such a way to produce beta-amyloid.
In turn, beta-amyloid can accumulate in stages into microscopic amyloid plaques that are considered a hallmark of a brain affected by Alzheimer's disease. The pieces first form small oligomer clusters, then fibril chains of clusters, followed by beta-sheet mats of fibrils. The final stage is plaques, which contain clumps of beta-sheets and other substances. Without wishing to be bound by any one theory, it is believed that these stages of beta-amyloid aggregation disrupt cell-to-cell communication and activate immune cells, which trigger inflammation and ultimately destroy the brain cells.
The primary structure of the 42 amino acid residue long, beta-amyloid peptide is SEQ ID NO: 29:
In various embodiments, the present agents of conformation-sensitive antibodies target beta-amyloid, optionally in the context of a protein aggregate. In various embodiments, the present antibodies are directed to/or raised against a peptide comprising part of wild type or mutant beta-amyloid, including stretches of amino acids of SEQ ID NO: 29. In further embodiments, the antibody or antibody fragment is directed to/or raised against a peptide comprising amino acids 1-16 of SEQ ID NO: 29.
In various embodiments, the present agents of conformation-sensitive antibodies target the following peptide sequence of beta-amyloid (Aβ) peptide, including but not limited to SEQ ID NO: 30.
SEQ ID NO: 30 (1-16):
DAEFRHDSGYEVHHQK
In various embodiments, the present antibodies are directed to/or raised against a peptide comprising part or all of the amino acids of SEQ ID NO: 30. In some embodiments, the present antibodies are directed to/or raised against an epitope present in SEQ ID NO: 30.
In some embodiments, the present invention provides for an antibody, or Fab, directed against wild type or mutant beta-amyloid (Aβ) peptide, or peptide fragment. In various embodiments, the antibody, or Fab, comprises a heavy chain and/or a light chain, which are identified based on the sequence of the constant domain (e.g., mouse IgG1, rat kappa, etc.). The antibody, or Fab, can comprise, for each chain, a variable domain, a signal peptide, and/or a constant domain. In some embodiments, the antibody, or Fab, of the present invention comprises a variable heavy domain that comprises a peptide having an amino acid sequence at least 65%, at least 70%, at least 75%, at least 80%, at least 85%, at least 90%, at least 95%, at least 96%, at least 97%, at least 98%, or at least 99% identical to SEQ ID NO: 94:
In some embodiments, the antibody, or Fab, of the present invention comprises a variable light domain that comprises a peptide having an amino acid sequence at least 65%, at least 70%, at least 75%, at least 80%, at least 85%, at least 90%, at least 95%, at least 96%, at least 97%, at least 98%, or at least 99% identical to SEQ ID NO: 31:
In various embodiments, the antibody, or Fab, of the present invention comprises a constant domain that comprises a peptide having an amino acid sequence at least 65%, at least 70%, at least 75%, at least 80%, at least 85%, at least 90%, at least 95%, at least 96%, at least 97%, at least 98%, or at least 99% identical to SEQ ID NO: 32 and/or SEQ ID NO: 33:
In some embodiments, the antibody, or Fab, of the present invention comprises a signal peptide comprising a peptide having amino acid sequence identity to SEQ ID NO: 34 and/or SEQ ID NO: 35: MEWPLIFLFLLSGTAGVQS (SEQ ID NO: 34), and/or MESQTQVLMFLLLWVSGACA (SEQ ID NO: 35). In various embodiments, the signal peptide comprises an amino acid sequence having one or more amino acid mutations. In various embodiments, the signal peptide comprises an amino acid sequence having one, or two, or three, or four, or five, or six, or seven, or eight, or nine, or ten amino acid mutations. In some embodiments, the one or more amino acid mutations may be independently selected from substitutions, insertions, deletions, and truncations. In some embodiments, the amino acid mutations are amino acid substitutions, and may include conservative and/or non-conservative substitutions.
In further embodiments, the present invention contemplates an antibody, or Fab, comprising one or more complementarity-determining regions (CDR) for the variable heavy and/or variable light domains. In some embodiments, the CDRs are presented in Kabat definition. In various embodiments, the CDR comprises an amino acid sequence having one or more amino acid mutations. In various embodiments, the CDR comprises an amino acid sequence having one, or two, or three, or four, or five, or six, or seven, or eight, or nine, or ten amino acid mutations. In some embodiments, the one or more amino acid mutations may be independently selected from substitutions, insertions, deletions, and truncations. In some embodiments, the amino acid mutations are amino acid substitutions, and may include conservative and/or non-conservative substitutions.
In further embodiments, the variable heavy domain comprises a CDR1 having an amino acid sequence of SEQ ID NO: 36. In further embodiments, the variable heavy domain comprises a CDR2 having an amino acid sequence of SEQ ID NO: 37. In still further embodiments, the variable heavy domain comprises a CDR3 having an amino acid sequence of SEQ ID NO: 38. In some embodiments, the antibody, or Fab, of the present invention comprises CDR1: NYWMN (SEQ ID NO: 36); CDR2: QIYPGDGDTNYNGKFKG (SEQ ID NO: 37); and/or CDR3: GDY (SEQ ID NO: 38).
In some embodiments, the variable light domain comprises a CDR1 having an amino acid sequence of SEQ ID NO: 39. In further embodiments, the variable heavy domain comprises a CDR2 having an amino acid sequence of SEQ ID NO: 40. In still further embodiments, the variable heavy domain comprises a CDR3 having an amino acid sequence of SEQ ID NO: 41. In some embodiments, the antibody, or Fab, of the present invention comprises CDR1: KSSQSLLNSSNQKNYLA (SEQ ID NO: 39); CDR2: FASTRES (SEQ ID NO: 40); and/or CDR3: QQHYNTPLT (SEQ ID NO: 41).
In some embodiments, the antibody, or Fab, of the present invention comprises a variable heavy domain that comprises a peptide having an amino acid sequence at least 65%, at least 70%, at least 75%, at least 80%, at least 85%, at least 90%, at least 95%, at least 96%, at least 97%, at least 98%, or at least 99% identical to SEQ ID NO: 42:
In some embodiments, the antibody, or Fab, of the present invention comprises a variable light domain that comprises a peptide having an amino acid sequence at least 65%, at least 70%, at least 75%, at least 80%, at least 85%, at least 90%, at least 95%, at least 96%, at least 97%, at least 98%, or at least 99% identical to SEQ ID NO: 43:
In further embodiments, the variable heavy domain comprises a CDR1 having an amino acid sequence of GYTFTSYGIR (SEQ ID NO: 44). In further embodiments, the variable heavy domain comprises a CDR2 having an amino acid sequence of EIXPRSGNTYYNEKFK (SEQ ID NO: 45). In still further embodiments, the variable heavy domain comprises a CDR3 having an amino acid sequence of SIYYGRPYYFDY (SEQ ID NO: 46).
In some embodiments, the variable light domain comprises a CDR1 having an amino acid sequence of KASQNVATNVA (SEQ ID NO: 47). In further embodiments, the variable light domain comprises a CDR2 having an amino acid sequence of SASYRYS (SEQ ID NO: 48). In still further embodiments, the variable light domain comprises a CDR3 having an amino acid sequence of QQYNSYPLT (SEQ ID NO: 49).
In some embodiments, the antibody, or Fab, of the present invention comprises a variable heavy domain that comprises a peptide having an amino acid sequence at least 65%, at least 70%, at least 75%, at least 80%, at least 85%, at least 90%, at least 95%, at least 96%, at least 97%, at least 98%, or at least 99% identical to SEQ ID NO: 50:
In some embodiments, the antibody, or Fab, of the present invention comprises a variable heavy domain that comprises a peptide having an amino acid sequence at least 65%, at least 70%, at least 75%, at least 80%, at least 85%, at least 90%, at least 95%, at least 96%, at least 97%, at least 98%, or at least 99% identical to SEQ ID NO: 51:
In some embodiments, the antibody, or Fab, of the present invention comprises a variable light domain that comprises a peptide having an amino acid sequence at least 65%, at least 70%, at least 75%, at least 80%, at least 85%, at least 90%, at least 95%, at least 96%, at least 97%, at least 98%, or at least 99% identical to SEQ ID NO: 52:
In some embodiments, the antibody, or Fab, of the present invention comprises a variable light domain that comprises a peptide having an amino acid sequence at least 65%, at least 70%, at least 75%, at least 80%, at least 85%, at least 90%, at least 95%, at least 96%, at least 97%, at least 98%, or at least 99% identical to SEQ ID NO: 53:
In some embodiments, the variable heavy domain comprises a CDR1 having an amino acid sequence of GYTFTDHTIH (SEQ ID NO: 54). In further embodiments, the variable heavy domain comprises a CDR2 having an amino acid sequence of YIYPRDGSTKYNEKFK (SEQ ID NO: 55). In still further embodiments, the variable heavy domain comprises a CDR3 having an amino acid sequence of DYGYAFDY (SEQ ID NO: 56).
In further embodiments, the variable light domain comprises a CDR1 having an amino acid sequence of RSSTGAVTTSNYAN (SEQ ID NO: 57). In further embodiments, the variable light domain comprises a CDR2 having an amino acid sequence of GTSNRAP (SEQ ID NO: 58). In still further embodiments, the variable light domain comprises a CDR3 having an amino acid sequence of ALWYSTHYV (SEQ ID NO: 59).
In some embodiments, the antibody, or Fab, of the present invention comprises a variable heavy domain that comprises a peptide having an amino acid sequence at least 65%, at least 70%, at least 75%, at least 80%, at least 85%, at least 90%, at least 95%, at least 96%, at least 97%, at least 98%, or at least 99% identical to SEQ ID NO: 60:
In some embodiments, the antibody, or Fab, of the present invention comprises a variable light domain that comprises a peptide having an amino acid sequence at least 65%, at least 70%, at least 75%, at least 80%, at least 85%, at least 90%, at least 95%, at least 96%, at least 97%, at least 98%, or at least 99% identical to SEQ ID NO: 61:
In some embodiments, the antibody, or Fab, of the present invention comprises a variable heavy domain that comprises a peptide having an amino acid sequence at least 65%, at least 70%, at least 75%, at least 80%, at least 85%, at least 90%, at least 95%, at least 96%, at least 97%, at least 98%, or at least 99% identical to SEQ ID NO: 62:
In some embodiments, the antibody, or Fab, of the present invention comprises a variable light domain that comprises a peptide having an amino acid sequence at least 65%, at least 70%, at least 75%, at least 80%, at least 85%, at least 90%, at least 95%, at least 96%, at least 97%, at least 98%, or at least 99% identical to SEQ ID NO: 63:
In some embodiments, the antibody, or Fab, of the present invention comprises a variable heavy domain that comprises a peptide having an amino acid sequence at least 65%, at least 70%, at least 75%, at least 80%, at least 85%, at least 90%, at least 95%, at least 96%, at least 97%, at least 98%, or at least 99% identical to SEQ ID NO: 64:
In some embodiments, the antibody, or Fab, of the present invention comprises a variable light domain that comprises a peptide having an amino acid sequence at least 65%, at least 70%, at least 75%, at least 80%, at least 85%, at least 90%, at least 95%, at least 96%, at least 97%, at least 98%, or at least 99% identical to SEQ ID NO: 65:
In some embodiments, the antibody, or Fab, of the present invention comprises a variable heavy domain that comprises a peptide having an amino acid sequence at least 65%, at least 70%, at least 75%, at least 80%, at least 85%, at least 90%, at least 95%, at least 96%, at least 97%, at least 98%, or at least 99% identical to SEQ ID NO: 66:
In some embodiments, the antibody, or Fab, of the present invention comprises a variable light domain that comprises a peptide having an amino acid sequence at least 65%, at least 70%, at least 75%, at least 80%, at least 85%, at least 90%, at least 95%, at least 96%, at least 97%, at least 98%, or at least 99% identical to SEQ ID NO: 67:
In some embodiments, the variable heavy domain comprises a CDR1 having an amino acid sequence of GFTFSSYGMS (SEQ ID NO: 68). In further embodiments, the variable heavy domain comprises a CDR2 having an amino acid sequence of SINSNGGSTYYPDSVK (SEQ ID NO: 69). In still further embodiments, the variable heavy domain comprises a CDR3 having an amino acid sequence of GDY (SEQ ID NO: 70).
In further embodiments, the variable light domain comprises a CDR1 having an amino acid sequence of RSSQSLVYSNGDTYLH (SEQ ID NO: 71). In further embodiments, the variable light domain comprises a CDR2 having an amino acid sequence of KVSNRFS (SEQ ID NO: 72). In still further embodiments, the variable light domain comprises a CDR3 having an amino acid sequence of SQSTHVPWT (SEQ ID NO: 73). In still further embodiments, the variable light domain comprises a CDR having an amino acid sequence of RVSNRFS (SEQ ID NO: 74) or KVSSRFS (SEQ ID NO: 75).
Parkinson's Disease
Lewy bodies are the hallmark of Parkinson's disease which is mainly composed of alpha-synuclein. Alpha-synuclein plays a role in the development of rare familial and more common sporadic cases of Parkinson's disease. In familial Parkinson's disease, the expression levels of alpha-synuclein gene is increased or an abnormal form of the protein is found which are toxic to brain cells and result in neuron dysfunction. Alpha-synuclein is the primary structural component of Lewy bodies, suggesting that protein aggregation plays a role in sporadic Parkinson's disease. To treat Parkinson's disease, therapies that reduce alpha-synuclein gene expression or block its aggregation should be developed.
Alpha-synuclein is abundant in the human brain at the neurons tips in specialized structures called presynaptic terminals. Presynaptic terminals release chemical messengers, neurotransmitters, from synaptic vesicles. The release of neurotransmitters relays signals between neurons and is critical for normal brain function. So, alpha-Synuclein is a presynaptic neuronal protein that is thought that its abnormal soluble oligomeric conformations, i.e. protofibrils, are the toxic species that mediate disruption of cellular homeostasis and neuronal death, through effects on various intracellular targets, including synaptic function. Furthermore, secreted Alpha-synuclein may exert deleterious effects on neighboring cells, including seeding of aggregation, thus possibly contributing to disease propagation.
The human alpha-synuclein protein is made of 140 amino acids and is encoded by the SNCA gene. The amino acid sequence of human alpha-synuclein is shown by SEQ ID NO.: 76.
In various embodiments, the present antibodies are directed to/or raised against a peptide comprising part of wild type or mutant SCNA, including stretches of amino acids of SEQ ID NO: 76.
In various embodiments, the present agents of conformation-sensitive antibodies target mutated alpha-synuclein, optionally in the context of a protein aggregate. In various embodiments, the present agents of conformation-sensitive antibodies target the following peptide sequences of alpha-synuclein, including but not limited to SEQ ID NO.: 77.
In various embodiments, the present antibodies are directed to/or raised against a peptide comprising part or all of amino acids of SEQ ID NO: 77.
Tau proteins (Tubulin-binding protein) are proteins that function in stabilizing microtubules. Tau proteins are abundant in nerve cells and when become defective or fail to stabilize microtubules, pathologies of the nervous system can develop such as Alzheimer's disease or Parkinson's disease. Tau proteins are mainly active in the distal portions of axons where they stabilize microtubules as well as providing flexibility. Together with tubulin, Tau proteins stabilize microtubules and aid the assembly of tubulin in the microtubules. Hyper-phosphorylation of tau proteins can cause the helical and straight filaments to tangle (referred to as neurofibrillary tangles) which contribute to the pathology of Alzheimer's disease or Parkinson's disease.
Human Tau is encoded on chromosome 17q21 and the protein occurs mainly in the axons of the CNS and consists largely of six isoforms generated by alternative splicing (27). In various embodiments, any mutations of different Tau isoforms described in Cold Spring Harbor Perspectives in Medicine 2012; 2:a006247, the entire contents of which are hereby incorporated by reference, may be targeted by the present agents of conformation-sensitive antibodies.
The human Tau protein is made of 863 amino acids and is encoded by the MAPT gene. The amino acid sequence of human Tau protein is shown by SEQ ID NO.: 78.
In various embodiments, the present agents of conformation-sensitive antibodies target mutated Tau protein, optionally in the context of a protein aggregate. In various embodiments, the present antibodies are directed to/or raised against a peptide comprising part of wild type or mutant tau, including stretches of amino acids of SEQ ID NO: 78.
In various embodiments, the present agents of conformation-sensitive antibodies target the following peptide sequences of Tau protein, including but not limited to SEQ ID Nos: 79-80.
In various embodiments, the present antibodies are directed to/or raised against a peptide comprising part or all of amino acids of SEQ ID NO: 79 or 80.
Type II Diabetes
There are two major types of diabetes in man, both of which result in a disturbance of the normally tight control of glucose homeostasis affected by insulin secreted from pancreatic islets. Insulin-dependent (Type 1) diabetes is an autoimmune disease resulting in destruction of insulin-secreting cells and the requirement for insulin replacement therapy. Type 2 diabetes is a multifactorial disease with genetic and environmental components; it is characterized by a progressive decrease in the regulation of blood glucose levels. Amyloid is formed only in type 2 diabetic subjects since destruction of the islet β-cells in type 1 diabetes removes the source of IAPP.
Type 2 diabetes is associated with a decrease in insulin secretion and increasing hyperglycemia as a result of β-cell failure. A correlation between β-cell failure in type 2 diabetes and the formation of pancreatic islet amyloid deposits is established. IAPP (amylin), the major component of islet amyloid, is co-secreted with insulin from β-cell and aggregates to form amyloid fibrils that are toxic to β-cells.
Conversion from soluble monomer IAPP to β-sheet fibrils involves changes in the molecular conformation, cellular biochemistry and diabetes-related factors. In humans, the level of production of IAPP is important but is not the main factor in islet amyloidosis. Animal models of islet amyloidosis suggest that diabetes is induced by the deposits whereas in man, fibril formation appears to result from diabetes-associated islet dysfunction. Islet secretory failure results from progressive amyloidosis which provides a target for new therapeutic interventions.
Human IAPP protein is expressed from IAPP gene and is processed from an 89-residue coding sequence (SEQ ID NO.: 81). Proislet amyloid polypeptide (proIAPP, proamylin, proislet protein) is produced in the pancreatic beta cells (β-cells) as a 67 amino acid, 7404 Dalton pro-peptide and undergoes post-translational modifications including protease cleavage to produce amylin.
In various embodiments, the present antibodies are directed to/or raised against a peptide comprising part of wild type or mutant IAPP, including stretches of amino acids of SEQ ID NO: 81.
In various embodiments, the present agents of conformation-sensitive antibodies target mutated IAPP protein, optionally in the context of a protein aggregate. In various embodiments, the present agents of conformation-sensitive antibodies target the following peptide sequences of IAPP protein, including but not limited to SEQ ID NO.: 82.
In various embodiments, the present antibodies are directed to/or raised against a peptide comprising part or all of amino acids of SEQ ID NO: 82.
In some embodiments, the present invention relates to an anti-amyloid therapeutic vaccine and solubilizing monoclonal antibody. The present invention also includes antigenic peptide fragments modified so as to increase their antigenicity. For example, antigenic moieties and adjuvants may be attached to or admixed with the peptide. Examples of antigenic moieties and adjuvants include, but are not limited to, lipophilic muramyl dipeptide derivatives, nonionic block polymers, aluminum hydroxide or aluminum phosphate adjuvant, and mixtures thereof. It is also to be understood that the supramolecular antigenic construct compositions of the present invention can further comprise additional adjuvants including, but not limited to, keyhole limpet hemocyanin (KLH), bovine serum albumin (BSA) and other adjuvants such as, for example, lipid A, alum, calcium phosphate, interleukin 1, and/or microcapsules of polysaccharides and proteins, but particularly a detoxified lipid A, such as monophosphoryl or diphosphoryl lipid A, or alum, further preservatives, diluents, emulsifiers, stabilizers, and other components that are known and used in vaccines of the prior art. Moreover, any adjuvant system known in the art can be used in the composition of the present invention. Such adjuvants include, but are not limited to, Freund's incomplete adjuvant, Freund's complete adjuvant, polydispersed β-(1,4) linked acetylated mannan (“Acemannan”), TITERMAX® (polyoxyethylene-polyoxypropylene copolymer adjuvants from CytRx Corporation), modified lipid adjuvants from Chiron Corporation, saponin derivative adjuvants from Cambridge Biotech, killed Bordetella pertussis, the lipopolysaccharide (LPS) of gram-negative bacteria, large polymeric anions such as dextran sulfate, and inorganic gels such as alum, aluminum hydroxide, or aluminum phosphate.
In various embodiments, the agents of the invention, e.g. transfected cells comprising conformation-sensitive antibodies, are capable of substantially solubilizing aggregates that are linked to disease, e.g. ALS. In some embodiments, the solubilization is in vivo. In some embodiments, the solubilization is in vitro. In various embodiments, the agents cause about 90% solubilization, or about 80% solubilization, or about 70% solubilization, or about 60% solubilization, or about 50% solubilization, or about 40% solubilization, or about 30% solubilization, or about 25% solubilization.
Further, in some embodiments, the agents of the invention target the toxic form of the aggregate conformation. Since alone the β-sheet conformation of Aβ is cytotoxic, the antigenic construct elicits antibodies displaying a higher affinity for Aβ in that conformation, as compared to the affinity for the alpha-helix or random coil conformation of the amyloid target. Synthetic peptide, immunogens that mimic the conformation of a target epitope of pathological relevance offer the possibility to precisely control the immune response specificity.
In some embodiments of the present invention, the peptide of interest is added to phospholipids to give a peptide/phospholipid ratio of about 1:100. In other aspects, the peptide/phospholipid ratio is about 1:50, about 1:150, about 1:200, about 1:250, or about 1:300.
The term “antibody,” as used herein, is intended to refer to immunoglobulin molecules comprised of four polypeptide chains, two heavy (H) chains and two light (L) chains inter-connected by disulfide bonds capable of binding one or more antigens (e.g. bi-specific or multi-specific antibodies). Each heavy chain is comprised of a heavy chain variable region (abbreviated herein as HCVR or VH) and a heavy chain constant region. The heavy chain constant region is comprised of three domains, CH1, CH2 and CH3. Each light chain is comprised of a light chain variable region (abbreviated herein as LCVR or VL) and a light chain constant region. The light chain constant region is comprised of one domain, CL. The VH and VL regions can be further subdivided into regions of hypervariability, termed complementarity determining regions (CDRs), interspersed with regions that are more conserved, termed framework regions (FR). Each variable region (VH or VL) contains 3 CDRs, designated CDR1, CDR2 and CDR3. Each variable region also contains 4 framework sub-regions, designated FR1, FR2, FR3 and FR4. The term antibody includes all types of antibodies, including, for example, IgA, IgG, IgD, IgE and IgM, and their respective subclasses (isotypes), e.g., IgG-1, IgG-2, IgG-3, and IgG-4; IgA-1 and IgA-2. The term “antibody” as used herein is also intended to refer to antibody fragments and antigen-binding fragments.
In certain embodiments, the agent is an antibody. The antibody may be polyclonal or monoclonal; intact or truncated (e.g., F(ab′)2, Fab, Fv); bispecific or multispecific; xenogeneic, allogeneic, syngeneic, or modified forms thereof (e.g., a chimeric antibody or a humanized antibody). In an embodiment, the agent is a monoclonal antibody. The monoclonal antibody may be a non-human mammal-derived monoclonal antibody, a recombinant chimeric monoclonal antibody, a recombinant humanized monoclonal antibody, or a human monoclonal antibody. In certain embodiments, the antibody further comprises an Fc region of an immunoglobulin (e.g. IgA, IgG, IgE, IgD or IgM) which may interact with Fc receptors and activate an immune response.
A variety of suitable antibody formats are known in the art, such as, bispecific IgG-like formats (e.g., chimeric antibodies, humanized antibodies, human antibodies, single chain antibodies, heterodimers of antibody heavy chains and/or light chains, antigen-binding fragments of any of the foregoing (e.g., a Fv fragment (e.g., single chain Fv (scFv), a disulfide bonded Fv), a Fab fragment, a Fab′ fragment, a F(ab′)2 fragment), a single variable domain (e.g., VH, VL, VHH, a dAb, and modified versions of any of the foregoing (e.g., modified by the covalent attachment of polyalkylene glycol (e.g., polyethylene glycol, polypropylene glycol, polybutylene glycol) or other suitable polymer).
Further, smaller immunoglobulin molecules have been constructed and are possible formats for the present agents. A single-chain variable antibody fragment (scFv) comprises an antibody heavy chain variable domain joined via a short peptide to an antibody light chain variable domain (Huston et al., Proc. Natl. Acad. Sci. USA, 1988, 85: 5879-83). Because of the small size of scFv molecules, they exhibit more effective penetration into tissues than whole immunoglobulin. Alternatively, it has been proposed that fusion of a scFv to another molecule, such as a toxin, could take advantage of the specific antigen-binding activity and the small size of a scFv to deliver the toxin to a target tissue. See Chaudary et al., Nature 1989, 339:394; Batra et al., Mol. Cell. Biol. 1991, 11:2200. Conjugation or fusion of toxins to scFvs has thus been offered as an alternative strategy to provide potent, antigen-specific molecules.
Antibodies that are agents of the present invention and/or suitable for practicing the methods described herein can be, for example, monoclonal, polyclonal, bispecific, multispecific, and can include, but are not limited to, human, humanized or chimeric antibodies, comprising single chain antibodies, Fab fragments, F(ab′) fragments, fragments produced by a Fab expression library, and/or binding fragments of any of the above. Antibodies also refer to immunoglobulin molecules and immunologically active portions of immunoglobulin molecules, i.e., molecules that contain at least two antigen or target binding sites against at least two targets described herein. The immunoglobulin molecules described herein can be of any type (e.g., IgG, IgE, IgM, IgD, IgA and IgY), class (e.g., IgGI, IgG2, IgG3, IgG4, IgA1 and IgA2) or subclass of immunoglobulin molecule, as is understood by one of skill in the art. In addition, antibodies (e.g. mono-specific, bi-specific, and/or multi-specific) suitable for practicing the methods of the invention described herein can be, for example, Probodies (e.g. capped or masked prodrug antibodies (e.g. Cytomix)); Diabodies; “BITEs”; TandAbs; Flexibodies; Camelid Antibodies; dAbs; Immunobodies; Triomabs; Troybodies; Pepbodies; Vaccibodies; SigA plAntibodies; SMIPs; NARs; IgNARs; XmABs; syn-humanisation antibodies; minibodies; RabMAbs; Fcabs; mAb2 antibodies; Sympress antibodies; UniBodies; DuoBodies; or Vascular Targeting antibodies, as described in US Patent Nos. or Patent Publication Nos. U.S. Pat. No. 7,150,872, US 2007/004909, U.S. Pat. Nos. 5,837,242, 7,235,641, US 2005/089519, US 2005/079170, U.S. Pat. No. 6,838,254, US 2003/088074, US 2006/280734, US 2004/146505, U.S. Pat. Nos. 5,273,743, 6,551,592, 6,294,654, US 2004/101905, US 2004/253238, U.S. Pat. No. 6,303,341, US 2008/227958, US 2005/043519, US 2009/148438, US 2008/0181890, US 2008/095767, U.S. Pat. No. 5,837,821, WO 2009/117531, US 2005/033031, US 2009/298195, US 2009/298195, European Patent Publication EP 2152872, WO 2010/063785, US 2010/105874, U.S. Pat. No. 7,087,411 and/or US 2010/316602. See also, Storz Mabs. 2011 May-June; 3(3): 310-317.
In some embodiments of the invention described herein, the antibody is an antibody fragment. As used herein, the term “antibody fragment” or “antigen-binding fragment” refers to a protein fragment that comprises only a portion of an intact antibody, generally including an antigen binding site of the intact antibody and thus retaining the ability to bind antigen. Examples of antibody fragments include: (i) the Fab fragment, having VL, CL, VH and CH1 domains; (ii) the Fab′ fragment, which is a Fab fragment having one or more cysteine residues at the C-terminus of the CH1 domain; (iii) the Fd fragment having VH and CH1 domains; (iv) the Fd′ fragment having VH and CH1 domains and one or more cysteine residues at the C-terminus of the CHI domain; (v) the Fv fragment having the VL and VH domains of a single arm of an antibody; (vi) the dAb fragment (Ward et al., Nature 341, 544-546 (1989)) which consists of a VH domain; (vii) isolated CDR regions; (viii) F(ab′)2 fragments, a bivalent fragment including two Fab′ fragments linked by a disulphide bridge at the hinge region; (ix) single chain antibody molecules (e.g. single chain Fv; scFv) (Bird et al., Science 242:423-426 (1988); and Huston et al, PNAS (USA) 85:5879-5883 (1988)); (x) “diabodies” with two antigen binding sites, comprising a heavy chain variable domain (VH) connected to a light chain variable domain (VL) in the same polypeptide chain (see, e.g., EP 404,097; WO 93/11161; and Hollinger et al., Proc. Natl. Acad. Sci. USA, 90:6444-6448 (1993)); (xi) “linear antibodies” comprising a pair of tandem Fd segments (VH-Ch1-VH-Ch1) which, together with complementary light chain polypeptides, form a pair of antigen binding regions (Zapata et al., Protein Eng. 8(10): 1057-1062 (1995); and U.S. Pat. No. 5,641,870).
Repair
The main obstacle to brain delivery of drugs, proteins, oligonucleotides, etc. is constituted by the blood brain barrier. The BBB is practically impermeable. In some embodiments, the present invention can be used to repair the BBB, e.g., in diseases like Alzheimer Disease (AD) and Amyotrophic Lateral Sclerosis (ALS). In other embodiments, the present invention allows for the repair of BBB as well as release of antibodies or antibody fragments by the BBB without damaging the BBB and its functions.
In some embodiments, the present invention relates to the repair of cellular damage in tumors, diabetes II, heart attack, myocardial infarction, stroke, respiratory insufficiency, etc. The cellular vehicles described herein (e.g., EPCs) are therapeutic tools when they are modified by transfection with genes encoding therapeutic proteins, peptides, antibodies, antibody fragments, etc.
In some embodiments, the present invention can be used for repair of angiogenesis in retina, repair of wounds caused by a deficient blood supply (diabetes foot), repair of myocardial tissue after heart attack, vessel normalization in case of pathological tumor angiogenesis, skin diseases, etc.
Vectors
This invention also provides nucleic acid constructs that encode one or more antibodies or portions thereof and, optionally, allow for expression of the antibodies or portions thereof in prokaryotic and eukaryotic cells. For example, this invention provides vectors (e.g., DNA- or RNA-based vectors, including replication vectors or expression vectors) containing nucleotide sequences that encode one or more antibodies directed against (or antibody that specifically binds to) TDP43, beta-amyloid (Aβ), SOD-1, FUS/TLS, α-synuclein, Tau protein, and IAPP. In other embodiments, this invention provides vectors containing nucleotide sequences that encode a portion of one or more antibodies directed against (or antibody that specifically binds to) TDP43, beta-amyloid (Aβ), SOD-1, FUS/TLS, α-synuclein, Tau protein, and IAPP. For example, in one embodiment, one vector encodes a heavy chain or portions thereof and another vector encodes the light chain of the antibody or portions thereof.
In one embodiment, the vector includes the whole antibody or Fab portion of the antibody and is transfected into a host cell to express the whole antibody or the Fab portion of the antibody. In another embodiment, two or more vectors are transfected in to the host cell where a first vector encodes for a first portion of the antibody (e.g., the heavy chain) and a second vector encodes for a second portion of the antibody (e.g., the light chain). Such two or more vectors may be, in one example, cotransfected into the host cell.
The vectors provided herein contain a nucleotide sequence that encodes an antibody or a portion thereof. Examples of vectors of the invention are described in
In addition, this invention provides methods for making the vectors described herein, as well as methods for introducing the vectors into appropriate host cells for expression of the encoded antibodies. In general, the methods provided herein include constructing nucleic acid sequences encoding an antibody, cloning the sequences encoding the antibody into an expression vector. The expression vector can be introduced into host cells or incorporated into virus particles, either of which can be administered to a subject.
cDNA or DNA sequences encoding antibodies disclosed herein can be obtained (and, if desired, modified) using conventional DNA cloning and mutagenesis methods, DNA amplification methods, and/or synthetic methods. In general, a sequence encoding an antibody can be inserted into a cloning vector for genetic modification and replication purposes prior to expression. Each coding sequence can be operably linked to a regulatory element, such as a promoter, for purposes of expressing the encoded protein in suitable host cells in vitro and in vivo.
Expression vectors can be introduced into host cells for producing antibodies disclosed herein. There are a variety of techniques available for introducing nucleic acids into viable cells. Techniques suitable for the transfer of nucleic acid into mammalian cells in vitro include the use of liposomes, electroporation, microinjection, cell fusion, polymer-based systems, DEAE-dextran, viral transduction, the calcium phosphate precipitation method, etc. For in vivo gene transfer, a number of techniques and reagents may also be used, including liposomes; natural polymer-based delivery vehicles, such as chitosan and gelatin; viral vectors are also suitable for in vivo transduction. Where liposomes are employed, proteins which bind to a cell surface membrane protein associated with endocytosis may be used for targeting and/or to facilitate uptake, e.g., capsid proteins or fragments thereof tropic for a particular cell type, antibodies for proteins which undergo internalization in cycling, proteins that target intracellular localization and enhance intracellular half-life. The technique of receptor-mediated endocytosis is described, for example, by Wu et al., J. Biol. Chem. 262, 4429-4432 (1987); and Wagner et al., Proc. Natl. Acad. Sci. USA 87, 3410-3414 (1990).
Where appropriate, gene delivery agents such as, e.g., integration sequences can also be employed. Numerous integration sequences are known in the art (see, e.g., Nunes-Duby et al., Nucleic Acids Res. 26:391-406, 1998; Sadwoski, J. Bacteriol., 165:341-357, 1986; Bestor, Cell, 122(3):322-325, 2005; Plasterk et al., TIG 15:326-332, 1999; Kootstra et al., Ann. Rev. Pharm. Toxicol., 43:413-439, 2003). These include recombinases and transposases. Examples include Cre (Sternberg and Hamilton, J. Mol. Biol., 150:467-486, 1981), lambda (Nash, Nature, 247, 543-545, 1974), Fip (Broach, et al., Cell, 29:227-234, 1982), R (Matsuzaki, et al., J. Bacteriology, 172:610-618, 1990), cpC31 (see, e.g., Groth et al., J. Mol. Biol. 335:667-678, 2004), sleeping beauty, transposases of the mariner family (Plasterk et al., supra), and components for integrating viruses such as AAV, retroviruses, and antiviruses having components that provide for virus integration such as the LTR sequences of retroviruses or lentivirus and the ITR sequences of AAV (Kootstra et al., Ann. Rev. Pharm. Toxicol., 43:413-439, 2003).
Both prokaryotic and eukaryotic vectors can be used for expression of antibodies disclosed herein. Prokaryotic vectors include constructs based on E. coli sequences (see, e.g., Makrides, Microbio) Rey 1996, 60:512-538). Non-limiting examples of regulatory regions that can be used for expression in E. coli include lac, trp, Ipp, phoA, recA, tac, T3, T7 and APL. Non-limiting examples of prokaryotic expression vectors may include the λgt vector series such as λgt11 (Huynh et al., in “DNA Cloning Techniques, Vol. I: A Practical Approach,” 1984, (D. Glover, ed.), pp. 49-78, IRL Press, Oxford), and the pET vector series (Studier et al., Methods Enzymol 1990, 185:60-89). Prokaryotic host-vector systems cannot perform much of the post-translational processing of mammalian cells, however. Thus, eukaryotic host-vector systems may be particularly useful.
A variety of regulatory regions can be used for expression of the antibodies disclosed herein in mammalian host cells. For example, the SV40 early and late promoters, the cytomegalovirus (CMV) immediate early promoter, and the Rous sarcoma virus long terminal repeat (RSV-LTR) promoter can be used. Inducible promoters that may be useful in mammalian cells include, without limitation, promoters associated with the metallothionein II gene, mouse mammary tumor virus glucocorticoid responsive long terminal repeats (MMTV-LTR), the β-interferon gene, and the hsp70 gene (see, Williams et al., Cancer Res 1989, 49:2735-42; and Taylor et al., Mol Cell Biol 1990, 10:165-75).
In an embodiment, the present invention contemplates the use of inducible promoters capable of effecting high level of expression transiently in response to a cue. Illustrative inducible expression control regions include those comprising an inducible promoter that is stimulated with a cue such as a small molecule chemical compound. Particular examples can be found, for example, in U.S. Pat. Nos. 5,989,910, 5,935,934, 6,015,709, and 6,004,941, each of which is incorporated herein by reference in its entirety.
An expression vector can also include transcription enhancer elements, such as those found in SV40 virus, Hepatitis B virus, cytomegalovirus, immunoglobulin genes, metallothionein, and 3-actin (see, Bittner et al., Meth Enzymol 1987, 153:516-544; and Gorman, Curr Op Biotechnol 1990, 1:36-47). In addition, an expression vector can contain sequences that permit maintenance and replication of the vector in more than one type of host cell, or integration of the vector into the host chromosome. Such sequences include, without limitation, to replication origins, autonomously replicating sequences (ARS), centromere DNA, and telomere DNA.
In addition, an expression vector can contain one or more selectable or screenable marker genes for initially isolating, identifying, or tracking host cells that contain DNA encoding antibodies as described herein. For long term, stable expression in mammalian cells can be useful. A number of selection systems can be used for mammalian cells. For example, the Herpes simplex virus thymidine kinase (Wigler et al., Cell 1977, 11:223), hypoxanthine-guanine phosphoribosyltransferase (Szybalski and Szybalski, Proc Natl Acad Sci USA 1962, 48:2026), and adenine phosphoribosyltransferase (Lowy et al., Cell 1980, 22:817) genes can be employed in tk−, hgprt−, or aprt− cells, respectively. In addition, antimetabolite resistance can be used as the basis of selection for dihydrofolate reductase (dhfr), which confers resistance to methotrexate (Wigler et al., Proc Natl Acad Sci USA 1980, 77:3567; O'Hare et al., Proc Natl Acad Sci USA 1981, 78:1527); gpt, which confers resistance to mycophenolic acid (Mulligan and Berg, Proc Natl Acad Sci USA 1981, 78:2072); neomycin phosphotransferase (neo), which confers resistance to the aminoglycoside G-418 (Colberre-Garapin et al., J Mol Biol 1981, 150:1); and hygromycin phosphotransferase (hyg), which confers resistance to hygromycin (Santerre et al., Gene 1984, 30:147). Other selectable markers known in the art, such as, Kanamycin resistance, ampicillin resistance, histidinol and Zeocin™ also can be used.
A number of viral-based expression systems also can be used with mammalian cells to produce the antibody disclosed herein. Vectors using DNA virus backbones have been derived from simian virus 40 (SV40) (Hamer et al., Cell 1979, 17:725), adenovirus (Van Doren et al., Mol Cell Biol 1984, 4:1653), adeno-associated virus (McLaughlin et al., J Virol 1988, 62:1963), and bovine papillomas virus (Zinn et al., Proc Natl Acad Sci USA 1982, 79:4897). When an adenovirus is used as an expression vector, the donor DNA sequence may be ligated to an adenovirus transcription/translation control complex, e.g., the late promoter and tripartite leader sequence. Nucleotide sequence encoding the antibodies disclosed herein may then be inserted in the adenovirus genome by in vitro or in vivo recombination. Insertion in a non-essential region of the viral genome (e.g., region E1 or E3) can result in a recombinant virus that is viable and capable of expressing heterologous products in infected hosts. (See, e.g., Logan and Shenk, Proc Natl Acad Sci USA 1984, 81:3655-3659).
Bovine papillomavirus (BPV) can infect many higher vertebrates, including man, and its DNA replicates as an episome. A number of shuttle vectors have been developed for recombinant gene expression which exist as stable, multicopy (20-300 copies/cell) extrachromosomal elements in mammalian cells. Typically, these vectors contain a segment of BPV DNA (the entire genome or a 69% transforming fragment), a promoter with a broad host range, a polyadenylation signal, splice signals, a selectable marker, and “poisonless” plasmid sequences that allow the vector to be propagated in E. coli. Following construction and amplification in bacteria, the expression gene constructs are transfected into cultured mammalian cells by, for example, calcium phosphate coprecipitation. For those host cells that do not manifest a transformed phenotype, selection of transformants is achieved by use of a dominant selectable marker, such as histidinol and G418 resistance.
Alternatively, the vaccinia 7.5K promoter can be used. (See, e.g., Mackett et al., Proc Natl Acad Sci USA 1982, 79:7415-7419; Mackett et al., J Virol 1984, 49:857-864; and Panicali et al., Proc Natl Acad Sci USA 1982, 79:4927-4931.) In cases where a human host cell is used, vectors based on the Epstein-Barr virus (EBV) origin (OriP) and EBV nuclear antigen 1 (EBNA-1; a trans-acting replication factor) can be used. Such vectors can be used with a broad range of human host cells, e.g., EBO-pCD (Spickofsky et al., DNA Prot Eng Tech 1990, 2:14-18); pDR2 and ADR2 (available from Clontech Laboratories).
Retroviruses, such as Moloney murine leukemia virus, can be used since most of the viral gene sequence can be removed and replaced with exogenous coding sequence while the missing viral functions can be supplied in trans. In contrast to transfection, retroviruses can efficiently infect and transfer genes to a wide range of cell types including, for example, primary hematopoietic cells. Moreover, the host range for infection by a retroviral vector can be manipulated by the choice of envelope used for vector packaging.
For example, a retroviral vector can comprise a 5′ long terminal repeat (LTR), a 3′ LTR, a packaging signal, a bacterial origin of replication, and a selectable marker. The antibody coding sequence, for example, can be inserted into a position between the 5′ LTR and 3′ LTR, such that transcription from the 5′ LTR promoter transcribes the cloned DNA. The 5′ LTR contains a promoter (e.g., an LTR promoter), an R region, a U5 region, and a primer binding site, in that order. Nucleotide sequences of these LTR elements are well known in the art. A heterologous promoter as well as multiple drug selection markers also can be included in the expression vector to facilitate selection of infected cells. See, McLauchlin et al., Prog Nucleic Acid Res Mol Biol 1990, 38:91-135; Morgenstern et al., Nucleic Acid Res 1990, 18:3587-3596; Choulika et al., J Virol 1996, 70:1792-1798; Boesen et al., Biotherapy 1994, 6:291-302; Salmons and Gunzberg, Human Gene Ther 1993, 4:129-141; and Grossman and Wilson, Curr Opin Genet Devel 1993, 3:110-114.
Any of the cloning and expression vectors described herein may be synthesized and assembled from known DNA sequences using techniques that are known in the art. The regulatory regions and enhancer elements can be of a variety of origins, both natural and synthetic. Some vectors and host cells may be obtained commercially. Non-limiting examples of useful vectors are described in Appendix 5 of Current Protocols in Molecular Biology, 1988, ed. Ausubel et al., Greene Publish. Assoc. & Wiley Interscience, which is incorporated herein by reference; and the catalogs of commercial suppliers such as Clontech Laboratories, Stratagene Inc., and Invitrogen, Inc.
In some embodiments, the nucleotide sequences in the vectors that express an antibody may be codon optimized, for example the codons may be optimized for human use. In some embodiments the nucleotide sequences may be mutated to abrogate the normal in vivo function of the encoded proteins or codon optimized for human use.
As regards codon optimization, the nucleic acid molecules have a nucleotide sequence that encodes the antibodies of the invention and can be designed to employ codons that are used in the genes of the subject in which the antibody is to be produced. Many viruses, including HIV and other lentiviruses, use a large number of rare codons and, by altering these codons to correspond to codons commonly used in the desired subject, enhanced expression of the antibodies can be achieved. The codons used are “humanized” codons, i.e., the codons are those that appear frequently in highly expressed human genes (Andre et al., J. Virol. 72:1497-1503, 1998). Such codon usage provides for efficient expression of the transgenic antibodies in human cells. Any suitable method of codon optimization may be used. Such methods, and the selection of such methods, are well known to those of skill in the art.
Administration
The invention is based, in part, on the finding that the peripheral administration of the present cells allows for effective delivery of therapeutic agents (inclusive of, without limitation, the Fabs described herein) across the BBB. The invention is based, in part, on the finding that the peripheral administration of the present cells allows for effective delivery of therapeutic agents (inclusive of, without limitation, the Fabs described herein) to and/or past the BBB. Such peripheral administration includes, in some embodiments, any administration route which does not imply direct injection into the brain. More particularly, in some embodiments, peripheral administration comprises systemic injections, such as intramuscular (i.m.), intravenous (i.v.), intraperitoneal (i.p.), intra-arterial, subcutaneous or transdermic injections. Peripheral administration also includes oral administration, delivery using implants, or administration by instillation through the respiratory system, e.g., using sprays, aerosols or any other appropriate formulations.
Pharmaceutical Compositions and Formulation
The present invention further provides pharmaceutical compositions of the contemplated therapeutic agents, and a pharmaceutically acceptable carrier or excipient. As one skilled in the art will recognize, the agents described herein may be made up, together or separately, in any suitable form appropriate for the desired use and route of administration. As used herein the term “pharmaceutically acceptable” means approved by a regulatory agency of the Federal or a state government or listed in the U.S. Pharmacopeia or other generally recognized pharmacopeia for use in animals, and more particularly in humans. Examples of suitable dosage forms include, for example, oral, parenteral, and intravenous dosage forms.
Suitable dosage forms for oral use include, for example, solid dosage forms such as tablets, dispersible powders, granules, and capsules. In such dosage forms, the active agent is mixed with at least one inert, pharmaceutically acceptable excipient or carrier such as sodium citrate, dicalcium phosphate, etc., and/or a) fillers or extenders such as starches, lactose, sucrose, glucose, mannitol, silicic acid, microcrystalline cellulose, etc.; b) binders such as, for example, carboxymethylcellulose, alginates, gelatin, polyvinylpyrrolidone, sucrose, acacia, etc.; c) humectants such as glycerol, etc.; d) disintegrating agents such as agar-agar, calcium carbonate, potato or tapioca starch, alginic acid, certain silicates, sodium carbonate, cross-linked polymers such as crospovidone (cross-linked polyvinylpyrrolidone), croscarmellose sodium (cross-linked sodium carboxymethylcellulose), sodium starch glycolate, etc.; e) solution retarding agents such as paraffin, etc.; f) absorption accelerators such as quaternary ammonium compounds, etc.; g) wetting agents such as, for example, cetyl alcohol and glycerol monostearate, etc.; h) absorbents such as kaolin and bentonite clay, etc.; and i) lubricants such as talc, calcium stearate, magnesium stearate, solid polyethylene glycols, sodium lauryl sulfate, glyceryl behenate, etc., and mixtures of such excipients. One of skill in the art will recognize that particular excipients may have two or more functions in the oral dosage form. In the case of an oral dosage form, for example, a capsule or a tablet, the dosage form may also comprise buffering agents.
The solid oral dosage forms can be prepared by any conventional method known in the art, for example granulation (e.g., wet or dry granulation) of the active agent with one or more suitable excipients. Alternatively, the active agent can be layered onto an inert core (e.g., a nonpareil/sugar sphere or silica sphere) using conventional methods such as fluidized bed or pan coating, or extruded and spheronized using methods known in the art, into active agent-containing beads. Such beads can then be incorporated into tablets or capsules using conventional methods.
The solid dosage forms of capsules, tablets, granules, active agent-containing beads can be prepared with coatings, such as enteric coatings, reverse enteric coatings, extended release coatings, pulsatile release coatings, etc. and other coatings, or combinations of coatings, well known in the art. Optionally, the dosage forms may release the active ingredient(s) only, or preferentially, in a certain part of the intestinal tract, for example, in a delayed manner.
Liquid dosage forms for oral administration include pharmaceutically acceptable emulsions, solutions, suspensions, syrups and elixirs. In addition to the active agents, the liquid dosage forms may contain inert diluents commonly used in the art such as, for example, water or other solvents, solubilizing agents and emulsifiers such as ethyl alcohol, isopropyl alcohol, ethyl carbonate, ethyl acetate, benzyl alcohol, benzyl benzoate, propylene glycol, 1,3-butylene glycol, dimethylformamide, oils (in particular, cottonseed, groundnut, corn, germ, olive, castor, and sesame oils), glycerol, tetrahydrofurfuryl alcohol, polyethylene glycols and fatty acid esters of sorbitan, etc., and mixtures thereof.
Besides inert diluents, the oral compositions can also include adjuvants such as sweetening, flavoring, and perfuming agents.
Suspensions, in addition to the active agents, may contain suspending agents such as, for example, ethoxylated isostearyl alcohols, polyoxyethylene sorbitol and sorbitan esters, microcrystalline cellulose, aluminum metahydroxide, bentonite, agar-agar, tragacanth, etc., and mixtures thereof.
Dosage forms suitable for parenteral administration (e.g. intravenous, intramuscular, intraperitoneal, subcutaneous and intra-articular injection and infusion) include, for example, solutions, suspensions, dispersions, emulsions, and the like. They may also be manufactured in the form of sterile solid compositions (e.g. lyophilized composition), which can be dissolved or suspended in sterile injectable medium immediately before use. They may contain, for example, suspending or dispersing agents known in the art.
The formulations comprising the therapeutic agents of the present invention may conveniently be presented in unit dosage forms and may be prepared by any of the methods well known in the art of pharmacy. Such methods generally include the step of bringing the therapeutic agents into association with a carrier, which constitutes one or more accessory ingredients. Typically, the formulations are prepared by uniformly and intimately bringing the therapeutic agent into association with a liquid carrier, a finely divided solid carrier, or both, and then, if necessary, shaping the product into dosage forms of the desired formulation (e.g., wet or dry granulation, powder blends, etc., followed by tableting using conventional methods known in the art).
It will be appreciated that the actual dose of the therapeutic agents to be administered according to the present invention will vary according to the particular agent, the particular dosage form, and the mode of administration. Many factors that may modify the action of the agents described herein (e.g., body weight, gender, diet, time of administration, route of administration, rate of excretion, condition of the subject, drug combinations, genetic disposition and reaction sensitivities) can be taken into account by those skilled in the art. Administration can be carried out continuously or in one or more discrete doses within the maximum tolerated dose. Optimal administration rates for a given set of conditions can be ascertained by those skilled in the art using conventional dosage administration tests.
The desired dose of the therapeutic agents may be presented as one dose or two or more sub-doses administered at appropriate intervals throughout the dosing period (e.g., about one hour, about one day, about one week, etc).
In accordance with certain embodiments of the invention, the therapeutic agents may be administered, for example, more than once daily, about once per day, about every other day, about every third day, or about once a week.
The agents of the present invention may be administered by any appropriate route, for example, parenterally or non-parenterally. In an embodiment, the present agent may be administered parenterally, including for example, intravenous, intramuscular, intraperitoneal, subcutaneous and intra-articular injection and infusion, among others.
Additional Agents and Administration
In some embodiments, the present agents may be used alone or in combination with one or more additional agent(s) for simultaneous, separate or sequential use.
For instance, when used in the context of ALS, an additional agent may be Riluzole (e.g. RILUTEK, see, e.g., U.S. Pat. Nos. 5,527,814 and 6,432,992, the contents of which are hereby incorporated by reference). In some embodiments, the additional agent is one or more of an anti-Nogo-A antibody, GM604 (GENERVON), fingolimod (e.g. GILENYA), Dexpramipexole (BIOGEN), ceftriaxone, CK2017357 (TIRASEMTIV, CYTOKINETICS), N P001 (NEURALTUS PHARMACEUTICALS), lithium, selegiline hydrochloride (ELDEPRYL), GF-1 (rhIGF-1, or IGF-1), or derivatives thereof. In some embodiments, the additional agent is one that targets one or more neurotrophic factors, e.g. NGF, BDNF, CNTF, and MNTF.
Further, in the context of type 2 diabetes, an additional agent may be insulin and/or any non-insulin diabetes agents (e.g. selected from metformin (e.g. GLUCOPHAGE, GLUMETZA); sulfonylureas (e.g. glyburide (e.g. DIABETA, GLYNASE), glipizide (e.g. GLUCOTROL) and glimepiride (e.g. AMARYL)); thiazolidinediones (e.g. rosiglitazone (e.g. AVANDIA) and pioglitazone (e.g. ACTOS)); DPP-4 inhibitors (e.g. sitagliptin (e.g. JAN UVIA), saxagliptin (e.g. ONGLYZA) and linagliptin (e.g. TRADJENTA)); GLP-1 receptor agonists (e.g. exenatide (e.g. BYETTA) and liraglutide (e.g. VICTOZA)); and SGLT2 inhibitors (e.g. canagliflozin (e.g. NVOKANA) and dapagliflozin (e.g. FARXIGA))) and/or insulin may be used in treatment. For example, certain patients may be able to manage diabetes with diet and exercise alone (e.g. along with glucose monitoring). However, often this is not the case and therapeutic agents are needed. A first line of treatment may be a non-insulin diabetes agent (e.g. selected from metformin (e.g. GLUCOPHAGE, GLUMETZA); sulfonylureas (e.g. glyburide (e.g. DIABETA, GLYNASE), glipizide (e.g. GLUCOTROL) and glimepiride (e.g. AMARYL)); thiazolidinediones (e.g. rosiglitazone (e.g. AVANDIA) and pioglitazone (e.g. ACTOS)); DPP-4 inhibitors (e.g. sitagliptin (e.g. JANUVIA), saxagliptin (e.g. ONGLYZA) and linagliptin (e.g. TRADJENTA)); GLP-1 receptor agonists (e.g. exenatide (e.g. BYETTA) and liraglutide (e.g. VICTOZA)); and SGLT2 inhibitors (e.g. canagliflozin (e.g. NVOKANA) and dapagliflozin (e.g. FARXIGA)).
Co-administration of the agents described herein with an additional agent can be simultaneous or sequential. Further, the present invention contemplates co-formulation of one or more agents of the invention with one or more additional agent(s).
In some embodiments, the agents described herein and an additional agent is administered to a subject simultaneously. The term “simultaneously” as used herein, means that agents described herein and an additional agent are administered with a time separation of no more than about 60 minutes, such as no more than about 30 minutes, no more than about 20 minutes, no more than about 10 minutes, no more than about 5 minutes, or no more than about 1 minute. Administration of the agents described herein and an additional agent can be by simultaneous administration of a single formulation (e.g., a formulation comprising the agents described herein and an additional agent) or of separate formulations (e.g., a first formulation including the agents described herein and a second formulation including an additional agent).
Co-administration does not require the therapeutic agents to be administered simultaneously, if the timing of their administration is such that the pharmacological activities of the agents described herein and an additional agent overlap in time, thereby exerting a combined therapeutic effect. For example, the agents described herein and an additional agent can be administered sequentially. The term “sequentially” as used herein means that the agents described herein and an additional agent are administered with a time separation of more than about 60 minutes. For example, the time between the sequential administration of the agents described herein and an additional agent can be more than about 60 minutes, more than about 2 hours, more than about 4 hours, more than about 8 hours, more than about 10 hours, more than about 12 hours, more than about 24 hours, more than about 36 hours, more than about 48 hours, more than about 72 hours, more than about 96 hours, or more than about 1 week apart. The optimal administration times will depend on the rates of metabolism, excretion, and/or the pharmacodynamic activity or toxicity of the agents described herein and an additional agent being administered. Either the agents described herein or an additional agent can be administered first.
Methods of measuring or monitoring the immune effect induced by the present agents are well known in the art. These methods include, but are not limited to, flow cytometry (including, for example, fluorescent activating cell sorting (FACS)), solid phase enzyme-linked immunosorbent assay (ELISA), western blotting (including in cell western), immunofluorescent staining, microengraving (see Han Q et al. Lab Chip. 2010; 10(11):1391-1400), immunofluorescent staining of incorporated bromodeoxyuridine (BrdU) or 7-aminoactinomycin D (7-MD); ELISPOT Assays; mRNA analysis; quantitative RT-PCR; TaqMan Q-PCR; histology; laser capture microdissection; and bioluminescent imaging.
In accordance with certain embodiments of the invention, the agent agents described herein and an additional agent may each be administered, for example, more than once daily, about once per day, about every other day, about every third day, or about once a week, or once every 2 or 3 weeks.
Co-administration also does not require the therapeutic agents to be administered to the subject by the same route of administration. Rather, each therapeutic agent can be administered by any appropriate route, for example, parenterally or non-parenterally.
Methods of Treatment/Patient Selection
In some embodiments, the neurodegenerative disease that is treated by the present agents is selected from MS (including without limitation the subtypes described herein), Alzheimer's. disease (including, without limitation, Early-onset Alzheimer's, Late-onset Alzheimer's, and Familial Alzheimer's disease (FAD), Parkinson's disease and parkinsonism (including, without limitation, Idiopathic Parkinson's disease, Vascular parkinsonism, Drug-induced parkinsonism, Dementia with Lewy bodies, Inherited Parkinson's, Juvenile Parkinson's), Huntington's disease, Amyotrophic lateral sclerosis (ALS, including, without limitation, Sporadic ALS, Familial ALS, Western Pacific ALS, Juvenile ALS, Hiramaya Disease).
In some embodiments, the disease is one characterized by amyloid plaque formation including secondary amyloidosis and age-related amyloidosis including, but not limited to, neurological disorders such as Alzheimer's Disease (AD), including diseases or conditions characterized by a loss of cognitive memory capacity such as, or example, mild cognitive impairment (MCI), Lewy body dementia, Down's syndrome, hereditary cerebral hemorrhage with amyloidosis (Dutch type); the Guam Parkinson-Dementia complex; as well as other diseases which are based on or associated with amyloid-like proteins such as progressive supranuclear palsy, multiple sclerosis; Creutzfeld Jacob disease, Parkinson's disease, HIV-related dementia, ALS (amyotropic lateral sclerosis), Adult Onset Diabetes; senile cardiac amyloidosis; endocrine tumors, and others, including macular degeneration, but particularly a disease or condition
In a specific embodiment, the disease being treated by the present agents is ALS, including, without limitation, Sporadic ALS, Familial ALS, Western Pacific ALS, Juvenile ALS, Hiramaya Disease.
In a specific embodiment, the disease being treated by the present agents is one or more of familial ALS, Motor neuropathy with pyramidal features, Finkel type SMA or SMA IV, TARDBP-related amyotrophic lateral sclerosis, C9orf72-related FTD/ALS, and CHCHDIO-related ALS/FTD.
In various embodiments, the present agents find use in a method of treatment in which neurodegeneration is halted or slowed relative to an untreated state. In various embodiments, the present agents reduce or eliminate the spreading of aggregates described herein. In various embodiments, the present agents reduce or eliminate the progression of the neurodegenerative disease.
In various embodiments, the present agents reduce or eliminate the progression of ALS. In some embodiments, the present agents extend one or more of: survival, time to tracheostomy and time to mechanical ventilation. In various embodiments, the present agents improve or reduce the severity of various symptoms of ALS, including without limitation: Early symptoms of ALS often include increasing muscle weakness, especially involving the arms and legs, speech, swallowing or breathing. In some embodiments, the present agents find use in a method that delays onset of ALS or ALS symptom(s) in a patient at risk for ALS. In some embodiments, the present agents find use in a method that slows progression of ALS or ALS symptom(s) in a patient having ALS. In some embodiments, the present agents find use in a method that causes regression of ALS. In some embodiments, the present agents increase swallowing volume in a patient having ALS.
In various embodiments, the present agents improve a patient's ALS as measured via the Amyotrophic Lateral Sclerosis Functional Rating Scale (ALSFRS, see, e.g., Arch Neurol. 1996 February; 53(2):141-7, the entire contents of which are hereby incorporated by reference). In various embodiments, the present agents cause an increase in scoring in any of the following parameters in the ALSFRS: (1) speech, (2) salivation, (3) swallowing, (4) handwriting, (5) cutting food and handling utensils (with or without gastrostomy), (6) dressing and hygiene, (7) turning in bed and adjusting bed clothes, (8) walking, (9) climbing stairs, and (10) breathing. In various embodiments, each parameter, which is scored between 0 (worst) and 4 (best) is improved. For instance, the agents might increase the scoring of any parameter to a score of 4, or 3, or 2, or 1, relative to untreated measures.
In some embodiments, the present agents increase forced vital capacity (FVC) as described in, for example, J Neurol Neurosurg Psychiatry. 2006 March; 77(3): 390-392, the entire contents of which are hereby incorporated by reference).
In some embodiments, the present agents increase FVC above about 75% to, e.g. to about 80%, or about 85%, or about 90%, or about 95%, or about 100%.
In some embodiments, the present agents increase Appel ALS (AALS) score. The Appel ALS Scale consists of 5 subscales (Bulbar Function, Respiratory Function, Overall Muscle Strength, Upper Extremity, and Lower Extremity Function) with scores ranging from 30 (Normal) to 164 (Maximal Dysfunction). Patients with a baseline AALS score of between 40 and 80 may be patients of the present invention.
In some embodiments, the present invention relates to the treatment of tumors, heart attack, myocardial infarction, stroke, respiratory insufficiency, etc.
In some embodiments, the present invention relates to the treatment of angiogenesis in retina, repair of wounds caused by a deficient blood supply (diabetes foot), repair of myocardial tissue after heart attack, vessel normalization in case of pathological tumor angiogenesis, skin diseases, etc.
In some embodiments, the present invention relates to the treatment of type 2 diabetes (or “type 2 diabetes mellitus” or “noninsulin-dependent diabetes mellitus (NIDDM)” or “adult-onset diabetes”). In some embodiments, the present invention relates to the treatment of an inappropriate increase in blood glucose levels, which generates chronic complications as it affects large and small vessels and nerves. In some embodiments, the present invention relates to the treatment of insulin resistance.
As used herein, the terms “subject” and “patient” refer to any animal, such as a mammal. The term “mammal” as used herein refers to any mammal classified as a mammal, including humans, non-human primates, apes, pigs, cows, goats, sheep, horses, dogs, cats and those mammals employed in scientific research commonly known in the art, for example, mice, rats, hamsters, rabbits, guinea-pigs, and ferrets. In one embodiment of the invention, the mammal is a human.
This invention is further illustrated by the following non-limiting examples.
The purpose of this experiment was to assess the ability of the EPCs to integrate into the BBB.
Specifically, the BBB was set up by coating cell culture inserts with 1:20 collagen for 1 hour at 37° C., followed by seeding with 2×105 hCMEC/D3 cells in OptiMEM. 500 μl of Optimem was pipetted into a receiver well (i.e., the basolateral side), and the BBB was then incubated for 72 hours at 37° C./5% CO2 in order to allow for monolayer formation. On Day 4, the medium was removed and replaced with HEPC.CB1 pl.CAG.GFP cells. The experimental groups were split into (1) a positive control (n=3) of HEPC.CB1 pl.CAG.GFP only (GFP-EPCs); and (2) a BBB experimental group (n=3) of hCMEC.D3 (BBB)+HEPC.CB1 pl.CAG.GFP cells. Specifically, the HEPC.CB1 cells were suspended in OptiMEM to 1.2×107/ml, and finally a 200 μl cell suspension was combined with 1800 μl OptiMEM to 106 cells/ml (2×105 cells/200 μl). Medium was then removed from upper and lower wells, and 200 μl of the cell suspension as transferred to the upper well. 500 μl of Optimem was added to the lower well and the BBB was allowed to incubated for 48 hours @ 37° C./5% 002. On Day 6, 300 μl of medium was pipetted from the receiver well (i.e., the basolateral side) into a black 96-well plate. GFP was then quantified using Lumistar (BMG Biotech).
The results showed that when the GFP-EPCs were added to BBB (hCMEC/D3), they insert into the apical and basolateral side, and 37% to 73% of the GFP is found on the basolateral side, suggesting than the GFP-EPCs can integrate into the BBB and release the GFP (the native permeability of this BBB model for 20 kDa protein (similar to GFP) is less than 5%.
Human endotheial precursor cells (HEPC.CB1, the equivalent of murine MAgEC 10.5 cells) were isolated and electroporated. A model of the human blood brain barrier (BBB) was constructed based upon work of Weksler B., Ignacio A Romero and Pierre-Olivier Couraud (2013) Fluids and Barriers of the CNS 2013, 10:16, using a human CMEC/D3 cell line. Injection of 4.5×109 transfected cells (where the overall cells produced at least 4.5 mg Fab/day) were added to the constituted BBB, incubated overnight with it then washed 3 times and the fluorescence emission of the BBB was assayed. The fluorescence of GFP expressed by the transfected cells, which was detected in the washed BBB, indicated insertion of these cells in the barrier. A schematic of the overall experiment is depicted in
The electroporated cells (or those treated with cationic lipids) were cultured in cell culture inserts (Millicell®). At 6 hours, 24 hours, 48 hours after electroporation the cells were washed and the GFP fluorescence was measured. The supernatants in the medium on both sides of the BBB were measured as well and the intensity of fluorescence was quantitated after 48 hours. The fluorescence results indicated substantial export of the expressed GFP by the cells transfected.
Early precursors of brain microvascular endothelial cells and mature cells were transfected with vectors described in Example 5. The two types of transfected cells were inserted in the blood brain barrier in-vitro and GFP fluorescence was measured. Results showed that the insertion of precursor cells in BBB was significantly higher than that of mature cells, which was very weak.
To test whether MAgEC cells (E10.5) would adhere to vessel walls in vivo in the mouse brain and stay there for a prolonged period of time, 106 MAgEC cells were injected into the right common carotid artery of the BALB/c x DSRed− mouse. 24 hours later, the brain was processed for sectioning and imaging.
The purpose of this experiment was to determine whether inserted transfected EPCs were incorporated in the angiogenesis network formed by the BBB cells (MBrMEC cells used as surrogate for BBB). In particular, the cells used were the MBrMEC, Hoescht-labelled beforehand, to create the BBB and the GFP transfected MAgEC10.5 as EPCs. To evaluate the angiogenesis and the interaction between EPCs and BBB, both cell types were seeded on Matrigel-coated wells or slides. The Matrigel matrix was diluted by two thirds in optiMEM (without FBS) at 4° C. Matrigel was allowed to polymerize at room temperature, and then the cells (2.5×104 cells per milliliter) were seeded. Endothelial cell rearrangement and vessel formation was observed regularly under an inverted light contrast microscope at specific time points. Cooperation in the angiogenesis process between the co-cultivated BBB (MBrMEC Hoescht-labelled) and the EPCs (GFP-MAgEC 10.5 cells) was shown via co-localization of fluorescence signals, as depicted in
Expression vectors were constructed for anti-TDP43 and anti-β amyloid, which are abundantly expressed even in non-specialized human cells and which retain their affinity for the antigens against which they were raised.
When injected in the carotid artery of mice, the homing of the transfected EPCs to the BBB was demonstrated, as well as their association with the BBB. Moreover, it was shown that, in an in vitro BBB model, greater than 70% of the produced proteins by the transfected EPCs are released in the basolateral compartment and only about 22% are left in the apical compartment. Compared with the very low BBB crossing of the intact IgG (0.21%) of the injected mAbs, they represent a potential significant advantage.
Antibodies were raised against Aβ and TDP43 in order to determine solubilization of the associated aggregated proteins. To determine the capacity of these antibodies to solubilize preformed TDP43 and Aβ aggregates, a disaggregation assay test of TDP43 and Aβ aggregates was performed.
Specifically, reaction tubes containing 30 μg of TDP43311-344/10 μl of PBS and 30 μg of Aβ1-16/10 μl of PBS, pH 7.3, were incubated for 1 week at 37° C. Aggregation was measured by thioflavin T (ThT)-binding assay in which the dye's fluorescence emission intensity reflects the degree of TDP43 fibrillar aggregation. Disaggregation was followed after addition of various undiluted sera of immunized mice or purified antibodies to the preformed fibers (10 μl each). The reaction mixtures were incubated for 2 days at 37° C. An irrelevant control antibody (mouse IgG) was used at a final concentration of 1 mg/ml. Fluorescence (excitation: 450 nm; emission: 482 nm) was measured on Fluoromax3 (Horiba Fluoromax 4C fluorometer, Japan) after addition of 1 ml of ThT (3 μM in 50 mM sodium phosphate buffer, pH 6.0). Sera with ThT was used as controls to subtract the emission of the sera themselves from the emission of the reaction mixtures (aggregates+ThT+sera), so as to follow the emission of the aggregates only.
Maximum solubilization obtained with both proteins and with the corresponding anti-sera was 100%.
Vectors were created express secreted GFP, anti-β-Amyloid fragment antibody (Fab) and anti-TDP43 Fab. The backbone is the same for all, e.g., a CAG promoter to have a strong expression in Endothelial Progenitor Cells (EPCs); the Kanamycin for bacteria selection; and the Hygromycin for mammal cells selection. The GFP vector includes an insulin peptide signal to allow the secretion of the GFP from the EPCs. There are three vectors for the “anti-protein” vectors, one expressing the light chain of the Fab, one the heavy chain (including a 10-His tag) and one “Dual” expressing both chains (with His tag) with a dual CAG promoter.
The vectors used were based on the pUC high copy derived from pBR322. A Synapsin promoter is included to promote expression in neurons or a CAG promoter is included for their expression in endothelial cells. The protein expressed is the eGFP and a peptide signal from the insulin gene. In this way, the GFP expressed in neurons or endothelial cells was secreted, favored by the peptide signal. In the case of neuron targeting, a 14 aa peptide sequence X will be used.
GFP expression was measured over time using the plasmid GFP (i.e., Q7226 pSF-CAG Prom Insulin SP-EGFP Hygro) of
Brain microvascular endothelial cells (and/or their precursors) collected from WT mice and transgenic mice for human Alzheimer SXFAD are transfected with the vectors described in Example 5 either by electroporation or with the help of cationic lipids, e.g., lipofectine, lipofectamine. Expression is followed by measuring the fluorescence emission of GFP.
The SXFAD transgenic mice overexpress mutant human APP (695) with four Familial Alzheimer's Disease (FAD) mutations along with human PS1 harboring two FAD mutations. Both transgenes are regulated by the mouse Thy1 promoter to drive overexpression in the brain. SXFAD mice recapitulate major features of Alzheimer's Disease amyloid pathology and may be a useful model of intraneuronal Abeta-42 induced neurodegeneration and amyloid plaque formation.
While the invention has been described in connection with specific embodiments thereof, it will be understood that it is capable of further modifications and this application is intended to cover any variations, uses, or adaptations of the invention following, in general, the principles of the invention and including such departures from the present disclosure as come within known or customary practice within the art to which the invention pertains and as may be applied to the essential features hereinbefore set forth.
Those skilled in the art will recognize, or be able to ascertain, using no more than routine experimentation, numerous equivalents to the specific embodiments described specifically herein.
All patents and publications referenced herein are hereby incorporated by reference in their entireties.
The publications discussed herein are provided solely for their disclosure prior to the filing date of the present application. Nothing herein is to be construed as an admission that the present invention is not entitled to antedate such publication by virtue of prior invention.
As used herein, all headings are simply for organization and are not intended to limit the disclosure in any manner. The content of any individual section may be equally applicable to all sections.
All of the following documents are incorporated by reference in their entireties.
This application claims priority to and the benefit of U.S. Provisional Patent Application Nos. 62/756,417, filed on Nov. 6, 2018; 62/773,659, filed on Nov. 30, 2018; 62/843,755, filed on May 6, 2019; 62/847,586, filed on May 14, 2019; and 62/896,627, filed on Sep. 6, 2019, the entire contents of which are herein incorporated by reference.
| Number | Date | Country | |
|---|---|---|---|
| 62896627 | Sep 2019 | US | |
| 62847586 | May 2019 | US | |
| 62843755 | May 2019 | US | |
| 62773659 | Nov 2018 | US | |
| 62756417 | Nov 2018 | US |
| Number | Date | Country | |
|---|---|---|---|
| Parent | 17290608 | Apr 2021 | US |
| Child | 18046734 | US |
