CFTR REGULATORS AND METHODS OF USE THEREOF

Abstract
Provided herein are compounds that activate CFTR and methods for treating constipation, dry eye disorders, and other diseases and disorders.
Description
BACKGROUND OF THE INVENTION

Constipation is a common clinical complaint in adults and children that negatively impacts quality of life. The prevalence of chronic constipation has been estimated to be 15% in the U.S. population, with health-care costs estimated at approximately 7 billion dollars annually, with in excess of 500 million dollars spent on laxatives. The mainstay of constipation therapy includes laxatives and many of them are available over the counter (soluble fiber, polyethylene glycol, probiotics, etc.). There are two FDA-approved chloride channel activators, lubiprostone and linaclotide, for treatment of constipation, but clinical trials showed variable and unimpressive efficacy of both drugs. Despite the wide range of therapeutic options, there is a continued need for safe and effective drugs to treat constipation.


Dry eye is a heterogeneous tear film disorder that results in eye discomfort, visual disturbance, and ocular surface pathology, and remains an unmet need in ocular disease with limited effective therapeutic options available. Dry eye is a major public health concern in an aging population, affecting up to one-third of the global population, including 5 million Americans aged 50 and over. Over-the-counter artificial tears and implantable punctal plugs are frequently used for symptomatic relief. Therapeutic approaches involve reducing ocular surface inflammation or augmenting tear/mucin secretion. The only medication currently approved for dry eye is topical cyclosporine, an anti-inflammatory that does not eliminate all symptoms in most dry eye patients.


Accordingly, additional treatments are needed for moderate-to-severe dry eye. Described herein, inter alia, are solutions to these and other problems in the art.


BRIEF SUMMARY OF THE INVENTION

Provided herein are compounds having the formula I:




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In the compound of formula I, L1 is a bond, —O—, —S—, —N(R15)— (e.g. —NH—), —C(O)N(R15)—, —C(O)—, substituted or unsubstituted alkylene or substituted or unsubstituted heteroalkylene; R20 is substituted or unsubstituted cycloalkyl, substituted or unsubstituted heterocycloalkyl, substituted or unsubstituted aryl or substituted or unsubstituted heteroaryl; or -L1-R20 is substituted or unsubstituted C2 or greater alkyl (e.g. C2-C10, C2-C6, C2-C5 or C2-C4 alkyl). In embodiments, L1 is a bond, —S—, —N(R15)—, —C(O)N(R15)— or substituted or unsubstituted alkylene. In emodiments, R20 is substituted or unsubstituted heterocycloalkyl, substituted or unsubstituted aryl or substituted or unsubstituted heteroaryl. In embodiments, L1-R20 is unsubstituted C2 or greater alkyl (e.g. C2-C10, C2-C6, C2-C5 or C2-C4 alkyl). R1 is hydrogen, halogen, —CX1,13, —CHX1,12, —CH2X1A, —CN, —SOn1R1A, —SOv1NR1BR1C, —NHNR1BR1C, —ONR1BR1C, —NHC(O)NHNR1BR1C, —NHC(O)NR1BR1C, —N(O)m1, —NR1BR1C, —C(O)R1D, —C(O)OR1D, —C(O)NR1BR1C, —OR1A, —NR1BSO2R1A, —NR1BC(O)R1D, —NR1BC(O)OR1D, —NR1BOR1D, —OCX1,13, —OCHX1,12, substituted or unsubstituted alkyl, substituted or unsubstituted heteroalkyl, substituted or unsubstituted cycloalkyl, substituted or unsubstituted heterocycloalkyl, substituted or unsubstituted aryl, or substituted or unsubstituted heteroaryl. R2 is hydrogen, halogen, —CX2,13, —CHX2,12, —CH2X2,1, —CN, —SOn2R2A, —SOv2NR2BR2C, —NHNR2BR2C, —ONR2BR2C, —NHC(O)NHNR2BR2C, —NHC(O)NR2BR2C, —N(O)m2, —NR2BR2C, —C(O)R2D, —C(O)OR2D, —C(O)NR2BR2C, —OR2A, —NR2BSO2R2A, —NR2BC(O)R2D, —NR2BC(O)OR2D, —NR2BOR2D, —OCX2,13, —OCHX2,12, substituted or unsubstituted alkyl, substituted or unsubstituted heteroalkyl, substituted or unsubstituted cycloalkyl, substituted or unsubstituted heterocycloalkyl, substituted or unsubstituted aryl, or substituted or unsubstituted heteroaryl. R3 is hydrogen, halogen, —CX3,13, —CHX3,12, —CH2X3,1, —CN, —SOn3R3A, —SOv3NR3BR3C, —NHNR3BR3C, —ONR3BR3C, —NHC(O)NHNR3BR3C, —NHC(O)NR3BR3C, —N(O)m3, —NR3BR3C, —C(O)R3D, —C(O)OR3D, —C(O)NR3BR3C, —OR3A, —NR3BSO2R3A, —NR3BC(O)R3D, —NR3BC(O)OR3D, —NR3BOR3D, —OCX3,13, —OCHX3,12, substituted or unsubstituted alkyl, substituted or unsubstituted heteroalkyl, substituted or unsubstituted cycloalkyl, substituted or unsubstituted heterocycloalkyl, substituted or un substituted aryl, or substituted or unsubstituted heteroaryl. R4 is hydrogen, halogen, —CX4,13, —CHX4,12, —CH2X4,1, —CN, —SOn4R4A, —SOv4NR4BR4C, —NHNR4BR4C, —ONR4BR4C, —NHC(O)NHNR4BR4C, —NHC(O)NR4BR4C, —N(O)m4, —NR4BR4C, —C(O)R4D, —C(O)OR4D, —C(O)NR4BR4C, —OR4A, —NR4BSO2R4A, —NR4BC(O)R4D, —NR4BC(O)OR4D, —NR4BOR4D, —OCX4,13, —OCHX4,12, substituted or unsubstituted alkyl, substituted or unsubstituted heteroalkyl, substituted or unsubstituted cycloalkyl, substituted or unsubstituted heterocycloalkyl, substituted or unsubstituted aryl, or substituted or unsubstituted heteroaryl. R5 is hydrogen, halogen, —CX5,13, —CHX5,12, —CH2X5,1, —CN, —SOn5R5A, —SOv5NR5BR5C, —NHNR5BR5C, —ONR5BR5C, —NHC(O)NHNR5BR5C, —NHC(O)NR5BR5C, —N(O)m5, —NR5BR5C, —C(O)R5D, —C(O)OR5D, —C(O)NR5BR5C, —OR5A, —NR5BSO2R5A, —NR5BC(O)R5D, —NR5BC(O)OR5D, —NR5BOR5D, —OCX5,13, —OCHX5,12, substituted or unsubstituted alkyl, substituted or unsubstituted heteroalkyl, substituted or unsubstituted cycloalkyl, substituted or unsubstituted heterocycloalkyl, substituted or unsubstituted aryl, or substituted or unsubstituted heteroaryl. R1 and R2, R2 and R3, R3 and R4, or R1 and R5 are optionally joined to form, together with the atoms to which they are attached, substituted or unsubstituted cycloalkyl, substituted or unsubstituted heterocycloalkyl, substituted or unsubstituted aryl, or substituted or unsubstituted heteroaryl. R6 is hydrogen, halogen, —CX6,13, —CHX6,12, —CH2X6,1, —CN, —SOn6R6A, —SOv6NR6BR6C, —NHNR6BR6C, —ONR6BR6C, —NHC(O)NHNR6BR6C, —NHC(O)NR6BR6C, —N(O)m6, —NR6BR6C, —C(O)R6D, —C(O)OR6D, —C(O)NR6BR6C, —OR6A, —NR6BSO2R6A, —NR6BC(O)R6D, —NR6BC(O)OR6D, —NR6BOR6D, —OCX6,13, —OCHX6,12, substituted or unsubstituted alkyl, substituted or unsubstituted heteroalkyl, substituted or unsubstituted cycloalkyl, substituted or unsubstituted heterocycloalkyl, substituted or unsubstituted aryl, or substituted or unsubstituted heteroaryl. R7 is hydrogen, halogen, —CX7,13, —CHX7,12, —CH2X7,1, —CN, —SOn7R7A, —SOv7NR7BR7C, —NHNR7BR7C, —ONR7BR7C, —NHC(O)NHNR7BR7C, —NHC(O)NR7BR7C, —N(O)m7, —NR7BR7C, —C(O)R7D, —C(O)OR7D, —C(O)NR7BR7C, —OR7A, —NR7BSO2R7A, —NR7AC(O)R7C, —NR7BC(O)OR7D, —NR7BOR7D, —OCX7,13, —OCHX7,12, substituted or unsubstituted alkyl, substituted or unsubstituted heteroalkyl, substituted or unsubstituted cycloalkyl, substituted or unsubstituted heterocycloalkyl, substituted or unsubstituted aryl, or substituted or unsubstituted heteroaryl. R8 is hydrogen, halogen, —CX8,13, —CHX8,12, —CH2X8,1, —CN, —SOn8R8A, —SOv8NR8BR8C, —NHNR8BR8C, —ONR8BR8C, —NHC(O)NHNR8BR8C, —NHC(O)NR8BR8C, —N(O)m8, —NR8BR8C, —C(O)R8D, —C(O)OR8D, —C(O)NR8BR8C, —OR8A, —NR8BSO2R8A, —NR8BC(O)R8D, —NR8BC(O)OR8D, —NR8BOR8D, —OCX8,13, —OCHX8,12, substituted or unsubstituted alkyl, substituted or unsubstituted heteroalkyl, substituted or unsubstituted cycloalkyl, substituted or unsubstituted heterocycloalkyl, substituted or unsubstituted aryl, or substituted or unsubstituted heteroaryl. R9 is hydrogen, halogen, —CX9,13, —CHX9,12, —CH2X9,1, —CN, —SOn9R9A, —SOv9NR9BR9C, —NHNR9BR9C, —ONR9BR9C, —NHC(O)NHNR9BR9C, —NHC(O)NR9BR9C, —N(O)m9, —NR9BR9C, —C(O)R9D, —C(O)OR9D, —C(O)NR9BR9C, —OR9A, —NR9BSO2R9A, —NR9BC(O)R9D, —NR9BC(O)OR9D, —NR9BOR9D, —OCX9,13, —OCHX9,12, substituted or unsubstituted alkyl, substituted or unsubstituted heteroalkyl, substituted or unsubstituted cycloalkyl, substituted or unsubstituted heterocycloalkyl, substituted or unsubstituted aryl, or substituted or unsubstituted heteroaryl. R15 is hydrogen, substituted or unsubstituted alkyl, substituted or unsubstituted heteroalkyl, substituted or unsubstituted cycloalkyl, substituted or unsubstituted heterocycloalkyl, substituted or un substituted aryl, or substituted or unsubstituted heteroaryl. R1A, R1B, R1C, R1D, R2A, R2B, R2C, R2D, R3A, R3B, R3C, R1C, R2B, R2C, R3B, R3C, R4B, R4C, R5B, R5C, R6B, R6C, R7B, R7C, R8B, R8C, R9B and R9C substituents R9A, R9B, R9C and R9D are independently hydrogen, halogen, —CF3, —CCl3, —CBr3, —CI3, —OH, —NH2, —COOH, —CONH2, —NO2, —SH, —SO3H, —SO4H, —SO2NH2, —NHNH2, —ONH2, —NHC(O)NHNH2, —NHC(O)NH2, —NHSO2H, —NHC(O)H, —NHC(O)—OH, —NHOH, —OCF3, —OCCl3, —OCBr3, —OCI3, —OCHF2, —OCHCl2, —OCHBr2, —OCHI2, substituted or unsubstituted alkyl, substituted or unsubstituted heteroalkyl, substituted or unsubstituted cycloalkyl, substituted or unsubstituted heterocycloalkyl, substituted or unsubstituted aryl, or substituted or unsubstituted heteroaryl; R1B, R1C, R2B, R2C, R3B, R3C, R4B, R4C, R5B, R5C, R6B, R6C, R7B, R7C, R8B, R8C, R9B and R9C substituents bonded to the same nitrogen atom may optionally be joined to form a substituted or unsubstituted heterocycloalkyl or substituted or unsubstituted heteroaryl. X1,1, X2,1, X3,1, X4,1, X5,1, X6,1, X7,1, X8,1, and X9,1 are independently —Cl, —Br, —I or —F. The symbols n1, n2, n3, n4, n5, n6, n7, n8, and n9 are independently an integer from 0 to 4. The symbols m1, m2, m3, m4, m5, m6, m7, m8, m9, v1, v2, v3, v4, v5, v6, v7, v8, and v9 are independently 1 or 2. In embodiments, when L1 is —CH2—, R20 is substituted or unsubstituted phenyl, R6, R7, R8 and R9 are hydrogen and R3 is NO2, then R5 is not —NH2. In embodiments, when L1 is —CH2—, R20 is substituted or unsubstituted phenyl, R6, R7, R8 and R9 are hydrogen and R1 is NO2, then R4 is not NH2. In embodiments, when L1-R20 is unsubstituted C2-C4 alkyl, then at least one of R1, R2, R3, R4 and R5 is NO2. In embodiments, when L1 is —CH2— and R20 is substituted or unsubstituted heterocycloalkyl or substituted or unsubstituted heteroaryl, then at least one of R1, R2, R3, R4 and R5 is NO2. In embodiments, L1 is a —CH2— and R20 is unsubstituted phenyl, then at least one of R1, R2, R3, R4 and R5 is halogen, NO2, NH2, COOCH3, COOH, CN or substituted C1-C3 alkyl or R2 and R3 is joined to form, together with the atoms to which they are attached, substituted or unsubstituted heteroaryl.


Also provided herein are pharmaceutical compositions including a compound as described herein a pharmaceutically acceptable excipient. In embodiments, the compound is of the formula:




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In compounds of formula I, L1, R1, R2, R3, R4, R5, R6, R7, R8, R9, R15 and R20 are as described herein. In embodiments, L1 is a bond, —S—, —N(R15)—, —C(O)N(R15)— or substituted or unsubstituted alkylene, and R20 is substituted or unsubstituted heterocycloalkyl, substituted or unsubstituted aryl or substituted or unsubstituted heteroaryl; or -L1-R20 is unsubstituted C2 or greater alkyl (e.g. C2-C10, C2-C6, C2-C5 or C2-C4 alkyl). In embodiments, L1-R20 is unsubstituted C2-C4 alkyl.


Further provided herein are methods of activating Cystic Fibrosis Transmembrane Conductance Regulator (CFTR) by contacting CFTR with an effective amount of a compound as described. In embodiments, the compound is of the formula:




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In compounds of formula I, L1, R1, R2, R3, R4, R5, R6, R7, R8, R9, R15 and R20 are as described herein. In embodiments, L1 is a bond, —S—, —N(R15)—, —C(O)N(R15)— or substituted or unsubstituted alkylene, and R20 is substituted or unsubstituted heterocycloalkyl, substituted or unsubstituted aryl or substituted or unsubstituted heteroaryl; or -L1-R20 is unsubstituted (e.g. C2-C10, C2-C6, C2-C5 or C2-C4) alkyl. In embodiments, L1-R20 is substituted or unsubstituted C2-C4 alkyl.


Further provided herein are methods of treating a disease or disorder in a subject in need thereof by administering an effective amount of a compound as described herein. In one aspect is a method of treating constipation in a subject in need thereof, the method including administering to the subject an effective amount described compound as described herein. In another aspect, is a method of treating a dry eye disorder in a subject in need thereof, the method including administering to the subject an effective amount of a compound as described herein. In yet another aspect, is a method of increasing lacrimation in a subject in need thereof, the method including administering to the subject an effective amount a compound as described herein.


In one aspect, provided is a method of treating a cholestatic liver disease in a subject in need thereof, including administering to the subject an effective amount a compound as described herein.


In another aspect, provided is a method of treating a pulmonary disease or disorder in a subject in need thereof, including administering to the subject an effective amount of a as described herein. In embodiments, the pulmonary disease or disorder is chronic obstructive pulmonary disease (e.g. bronchitis, asthma, cigarette smoke-induced lung dysfunction).





BRIEF DESCRIPTION OF THE DRAWINGS


FIG. 1. Strategy for pre-clinical development of CFTR activators for dry eye therapy. Activators of human wild-type CFTR activators identified by high-throughput screening are confirmed and characterized using by electrophysiological and biochemical assays, and then tested in live mice for activity at the ocular surface by measurements of potential difference and tear fluid secretion. The best compounds are then tested for pharmacokinetic properties and efficacy in a dry eye rodent model.



FIGS. 2A-2D. In vitro characterization of CFTR activators. FIG. 2A) (Top) Chemical structures. (Bottom) Representative short-circuit current (Isc) measured in Fischer rat thyroid (FRT) cells expressing wild-type CFTR. CFTR current was stimulated by test compounds and forskolin, and inhibited by CFTRinh-172 (10 μM). FIG. 2B) Concentration-dependence of CFTR activators (each data set derived from a single dose-response experiment as in A and fitted using an exponential curve). One-hundred percent CFTR activation is defined as that produced by 20 μM forskolin. FIG. 2C) Isc measurement for VX-770 done as in A. FIG. 2D) Cellular cAMP concentration in FRT cells in response to incubation for 10 min with 5 μM test compounds without or with forskolin (fsk, 100 nM). Positive controls included forskolin (100 nM and 20 μM), and forskolin plus 3-isobutyl-1-methylxanthine (IBMX, 100 μM) (mean±SEM, n=4-8).



FIGS. 3A-3E. Potential difference (PD) measurements of CFTR activators at the ocular surface in live mice. FIG. 3A) (Left) Photograph of an anesthetized mouse demonstrating ocular surface perfusion for PD measurement. The perfusion catheter, attached to the measuring electrode, is oriented perpendicular to the ocular surface. Cross-clamping forceps retract the upper eyelid to expose cornea and bulbar/palbebral conjunctiva for perfusion. The reference electrode is grounded via subcutaneous butterfly needle. (Right) Schematic of PD tracing for a typical experiment testing CFTR activity, as described in Results. FIG. 3B) Representative ocular surface PD measurements in wild-type mice. Solution compositions are detailed in Ref. 22. Concentrations: amiloride, 100 μM; forskolin and CFTRinh-172, 10 μM; test compounds, 1-10 μM as indicated. FIG. 3C) Study as in C, but with VX-770, 1-10 μM, as indicated. FIG. 3D) Summary of ΔPD in wild-type mice produced by forskolin (20 μM), or test compounds or VX-770 (each 1 μM). PDs were recorded in the presence of 100 μM amiloride and in the presence of an outward apical Cl gradient (mean±SEM, 8-20 eyes per agonist tested). FIG. 3E) Representative ocular surface PD measurements in CF mouse. Study as in B & C, CFTRact-K032, 1-10 μM as indicated.



FIGS. 4A-4D. Tear fluid secretion measurement of CFTR activators in living mice. FIG. 4A) Tear fluid was measured just prior to and at indicated times after single-dose topical application of vehicle (PBS, 0.5% polysorbate, 0.5% DMSO), cholera toxin (0.1 μg/mL), forskolin (20 μM), or forskolin+IBMX (250 μM). The effect of cholera toxin was measured after pre-anesthetizing the ocular surface with 4% lidocaine to suppress irritation and reflex tear secretion (mean±SEM, 6-10 eyes per condition). FIG. 4B) Time course of tear secretion following topical delivery of indicated compound. Concentrations: CFTRact-B074, 100 μM; CFTRact-J027, 50 μM; CFTRact-K089, 50 μM; VX-770, 10 μM (mean±SEM, 6-18 eyes). FIG. 4C) Effect of repeated dosing. CFTRact-J027 (0.1 nmol) was topically applied three times a day for two days. Tear fluid measurements were done after Dose 1 and Dose 2 on day 1, and Dose 5 on day 2 (mean±SEM, n=6 eyes). FIG. 4D) Lack of effect of CFTR activators on tear fluid secretion in CF mice, with compounds tested at the same concentrations as in B.



FIGS. 5A-5C. Compound pharmacology. FIG. 5A) Liquid chromatography/mass spectroscopy (LC/MS) determination of CFTRact-K089 amount in tear fluid at indicated times following single-dose (0.1 nmol) administration. Representative background-subtracted peak areas from tear washes (left) and means of corresponding amount recovered (right) (mean±SEM, 4 eyes per time point). Dashed lines denote the upper and lower calculated quantities of CFTRact-K089 required to achieve EC50 concentration. FIG. 5B) Lissamine green staining of cornea in BALB/c mice, measured on a 12-point scale (see Methods) after 14-days of three times daily treatment with CFTR activators (0.1 nmol) or vehicle (mean±SEM, 6 eyes per group). Shown as a positive control are scores from vehicle-treated mice following lacrimal gland excision (LGE) on Day 0 (n=11 eyes; *P<0.001 compared with other groups). FIG. 5C) Cytotoxicity measured by Alamar Blue assay in FRT cells incubated with test compounds for 1 or 24 h (10% DMSO as positive control; *P<0.05 compared to untreated cells; P=0.02 and 0.0006 for 1 and 24 h, respectively) (mean±SEM, n=4).



FIGS. 6A-6C. Topical CFTRact-K089 restores tear secretion and prevents corneal epithelial disruption following LGE. FIG. 6A) Basal tear secretion following extraorbital LGE in BALB/c mice, comparing eyes treated with CFTRact-K089 (mean±SEM, 15 eyes) to vehicle (n=11 eyes). Tear volume was measured immediately prior to LGE, and then one hour after the first daily dose on Days 4, 10 and 14 after LGE. *P<0.001. FIG. 6B) Representative photographs of eyes prior to LGE (left) and on Day 14 after LGE (right) in vehicle-treated eyes (top) and CFTRact-K089-treated eyes (bottom). FIG. 6C) Corneal epithelial disruption after LGE measured by LG scoring on a 12-point scale in the same eyes as in A (mean±SEM). *P<0.001.



FIG. 7. A summary of EC50 and Vmax values for compounds screened against CFTR A cell-based functional high-throughput screen of 120,000 compounds at 10 μM identified 20 chemical classes of small-molecule activators of wild-type CFTR that produced >95% of maximal CFTR activation. The screen was done in FRT epithelial cells co-expressing human wild-type CFTR and a cytoplasmic YFP halide sensor in 96-well format (26, 31, 32). Details of the primary screen will be reported separately. Secondary screening involved Isc measurement in CFTR-expressing FRT cells pretreated with submaximal forskolin (50 nM). Twenty-one compounds from eight chemical classes produced large increases in Isc at 1 μM (>75% of maximal current produced by 20 μM forskolin).



FIGS. 8A-8D. Identification of small-molecule CFTR activators. FIG. 8A. Project overview. FIG. 8B. CFTR activator screen using FRT cells coexpressing human wild-type CFTR and YFP iodide-sensing protein. Test compounds at 10 μM were added for 10 min at room temperature in the presence of forskolin (125 nM) before iodide addition. Examples of data from single wells of a 96-well plate showing CFTR activation by CFTRact-J027. FIG. 8C. Structures of CFTR activators emerging from the screen. FIG. 8D. Synthesis of CFTRact-J027.



FIGS. 9A-9E. Characterization of CFTR activation by CFTRact-J027. Short-circuit current measured in FRT cells expressing human wild-type CFTR (FIG. 9A) and ΔF508-CFTR (FIG. 9C) showing responses to indicated concentrations of forskolin (fsk), CFTRact-J027, and VX-770. The ΔF508-CFTR-expressing FRT cells were corrected with 3 μM VX-809 at 37° C. for 24 h before measurement. CFTRinh-172 (Inh-172, 10 μM) was added where indicated. FIG. 9B. CFTRact-J027 concentration-dependent activation of wild-type CFTR Cl current (S.E.; n=3 cultures). FIG. 9D. Short-circuit current in mouse colon showing responses to indicated concentrations of forskolin (fsk), CFTRact-J027, and CFTRinh-172, FIG. 9E. Assay of cAMP concentration in FRT cells measured following 10-min incubation with indicated concentrations of forskolin and 5 μM CFTRact-J027. Positive controls included forskolin (100 nM and 20 μM), and forskolin plus 3-isobutyl-1-methylxanthine (IBMX, 100 μM) (mean±SE, n=4-8).



FIGS. 10A-10D. CFTRact-J027 normalizes stool output and water content in loperamide-treated mice. FIG. 10A. Mouse model of constipation with loperamide (left). Three-hour stool weight, number of pellets, and stool water content in mice (mean±S.E., 6 mice per group). FIG. 10B. Same study as in A, but with cystic fibrosis mice lacking function CFTR (3-6 mice per group). FIG. 10C. Same study in A, but with an inactive chemical analog of CFTRact-J027 (structure shown). FIG. 10D. Dose-response for intraperitoneal administration of CFTRact-J027 in loperamide-treated mice (4-6 mice per group). One-way analysis of variance was used for A and B, Student's t-test was used for C, *p<0.05, ***p<0.001, ns: not significant.



FIGS. 11A-11C. Orally administered CFTRact-J027 normalizes stool output and water content in loperamide-treated mice. FIG. 11A. Study protocol (left) and stool output, pellet number and water content as done in FIG. 3 (mean±S.E., 6 mice per group). FIG. 11B. Dose-response study of CFTRact-J027 administered orally in loperamide-treated mice (4-6 mice per group). FIG. 11C. Same study in FIG. 11A, but with oral lubiprostone (0.5 mg/kg) or linaclotide (0.5 mg/kg) (5˜6 mice per group). One-way analysis of variance, *p<0.05, **p<0.01, ***p<0.001, ns: not significant.



FIGS. 12A-12D. CFTRact-J027 actions on intestinal fluid secretion, absorption and motility. FIG. 12A. Whole-gut transit time in control and loperamide-treated wild-type (left) and cystic fibrosis (right) mice (mean±S.E., 3-5 mice per group). Where indicated loperamide (0.3 mg/kg) and CFTRact-J027 (10 mg/kg) was administered intraperitoneally at 0 time (mean±S.E., 6 mice per group). One-way analysis of variance, **p<0.01, ***p<0.001, ns: not significant. FIG. 12B. Contraction of isolated intestinal strips. Ileum and colon strips (˜2 cm) were suspended in Krebs-Henseleit buffer with 0.5 g and 0.2 g tension, respectively. Where indicated CFTRact-J027, loperamide and carbachol were added to the organ chamber. FIG. 12C. Intestinal fluid secretion measured in closed mid-jejunal loops in wild-type mice (upper panel). Loops were injected with 100 μL vehicle or 100 μg CFTRact-J027. Loop weight/length was measured at 90 min (mean±S.E., 4 loops per group). Similar experiments done in cystic fibrosis mice (lower panel). FIG. 12D. Intestinal fluid absorption measured in mid-jejunal loops in cystic fibrosis mice. Loops were injected with 100 μL vehicle or 0.1 mg CFTRact-J027. Loop weight/length was measured at 30 min. Summary of fluid absorption (mean±S.E., 4 loops per group). Student's t-test, **p<0.01, ***p<0.001, ns: not significant.



FIGS. 13A-13E. CFTRact-J027 pharmacokinetics, tissue distribution and toxicity. FIG. 13A. In vitro metabolic stability of CFTRact-J027 assayed in mouse liver microsomes after incubation for specified times. FIG. 13B. Standard plasma concentration curve for LC-MS (left) and kinetics of CFTRact-J027 concentration in plasma determined by LC/MS following bolus intraperitoneal or oral administration of 10 mg/kg CFTRact-J027 at zero time (right, mean±S.E., 3 mice per group). FIG. 13C. In vitro toxicity measured by Alamar Blue assay in FRT cells. FIG. 13D. Body weight and lung wet/dry weight ratio in mice receiving 10 mg/kg CFTRact-J027 orally for 7 days (mean±S.E., 5 mice per group). FIG. 13E. Chronic administration protocol (left) and efficacy of oral CFTRact-J027 after 7-day administration (mean±S.E., 5 mice per group). Student's t-test, *p<0.05, **p<0.01, ***p<0.001, ns: not significant.



FIGS. 14A-14D. Synthesis and structure-activity analysis of phenylquinoxalinone CFTR activators. FIG. 14A: General synthetic scheme. FIG. 14B: Concentration-dependent activation of CFTR by selected phenylquinoxalinones in FRT cells expressing wildtype CFTR (mean±S.E.M., n=3). Dashed line indicates response to 125 nM forskolin. FIG. 14C: Structural determinants of phenylquinoxalinone activation of wildtype CFTR. FIG. 14D: Short-circuit current measurement in FRT cells expressing wildtype CFTR cells showing responses to indicated concentrations of forskolin (fsk), CFTRact-J135, and CFTRinh-172 (representative of 3 experiments).



FIGS. 15A-15D. Patch-clamp analysis of CFTR activation by CFTRact-J027. FIG. 15A: Representative whole-cell patch-clamp in FRT cells expressing human wildtype CFTR. Each panel shows superimposed membrane currents elicited at voltages between −100 and +100 mV (with 20 mV steps). Cells were exposed to a submaximal concentration of forskolin (fsk, 150 nM) with and then to CFTRact-J027 (1 μM) followed by CFTRinh-172 (10 μM). FIG. 15B: Current-voltage relationships from the experiment in A. FIG. 15C: Membrane conductance deduced from experiments as in B (mean±S.E.M., 4 experiments). FIG. 15D: Currents measured in inside-out patch-clamp experiment. CFTR was activated by submaximal ATP and catalytic subunit of protein kinase A (PKA), followed by CFTRact-J027 (1 μM). The voltage stimulation protocol was the same used for whole-cell experiments. Data representative of three sets of experiments.



FIGS. 16A-16C. CFTRact-J027 efficacy in mouse models of acute constipation. FIG. 16A: Experimental protocol (left) and 3-hour stool weight, pellet number and water content in mice treated with CFTRact-J027 (10 mg/kg, po) or vehicle 1 h before scopolamine (0.5 mg/kg, ip) (mean±S.E.M., 4 mice per group). FIG. 16B: Experimental protocol (left) and 3-hour stool weight and pellet number in mice treated with CFTRact-J027 (10 mg/kg, ip) or vehicle 1 h after scopolamine (0.5 mg/kg, ip) or loperamide (0.3 mg/kg, ip) (mean±S.E.M., 4 mice per group). FIG. 16C: Experimental protocol (left) and 3-hour stool weight and pellet number in mice treated with CFTRact-J027 (10 mg/kg, po) or vehicle 1 h after scopolamine (0.5 mg/kg, ip) or loperamide (0.3 mg/kg, ip) (mean±S.E.M., 4 mice per group). One-way analysis of variance was used for FIG. 16A and FIG. 16B, Student's t-test was used for FIG. 16C; *P<0.05, **P<0.01, ***P<0.001, ns: not significant.



FIGS. 17A-17B. CFTRact-J027 reverses constipation in chronically constipated C3H/HeJ mice. FIG. 17A: Four-hour stool weight, pellet number and water content (left) and percent change in these parameters after CFTRact-J027 (10 mg/kg, po) or vehicle treatment (center) in C3H/HeJ and C3H/HeOuJ mice (mean±S.E.M., 10 mice per group). Experimental protocol is on top right. FIG. 17B: Whole-gut transit time in C3H/HeJ and C3H/HeOuJ mice treated with CFTRact-J027 (10 mg/kg, ip) or vehicle at zero time (mean±S.E.M., 5 mice per group). Student's t-test, *P<0.05, **P<0.01, ***P<0.001, ns: not significant. All experiments were done in paired animals.



FIGS. 18A-18B. CFTRact-J027 is rapidly metabolized by human liver microsomes and is gastric acid-stable. FIG. 18A: In vitro metabolic stability of CFTRact-J027 assayed in human liver microsomes in the presence of NADPH after incubation for specified times, with representative chromatograms on the left. FIG. 18B: Stability of CFTRact-J027 in simulated gastric fluid (pH 2) after 3 h incubation, with representative chromatograms on the left (mean±S.E.M., n=3).



FIGS. 19A-19B. Relative efficacy of CFTRact-J027 with lubiprostone and linaclotide in increasing intestinal fluid secretion and stool output. FIG. 19A: Intestinal fluid secretion was measured in closed midjejunal loops in mice. Loops were injected with 100 μL vehicle or 100 μg CFTRact-J027, lubiprostone or linaclotide. Loop weight/length was measured at 90 min (mean±S.E.M., 4-8 loops per group, representative photos on right). FIG. 19B: Three-hour stool weight, pellet number and water content in mice orally treated with CFTRact-J027 (10 mg/kg), lubiprostone (0.5 mg/kg), linaclotide (0.5 mg/kg) or vehicle in a scopolamine model of constipation as done in FIG. 16A (mean±S.E.M., 4 mice per group). One-way analysis of variance, *P<0.05, **P<0.01, ***P<0.001.



FIG. 20. CFTRact-J027 produces swelling in enteroids generated from human small intestine. Percentage increase in enteroid area, as deduced by confocal fluorescence microscopy of calcein-stained enteroids, relative to initial area. Data shown for enteroids from human jejunum (left) and duodenum (right). Mean±S.E.M., n≥10 enteroids for each condition.



FIG. 21. Structure of a potent phenylquinoxalinone CFTR activator.



FIG. 22. Short-circuit current measurements in FRT cells expressing human wild type CFTR showing responses to indicated concentration of forskolin (fsk), CFTRinh-172, and 1c or 3j (representative of 3 experiments).



FIGS. 23A-23D. In vitro characterization of compound 1c. FIG. 23A. Cellular cAMP in FRT cells in response to incubation for 10 min with 10 pM lc without or with 90 nM forskolin (fsk). Positive controls included fsk (100 nM and 20 pM) and fsk+IBMX (20 pM+100 pM) (mean±S.E.M., n=4). FIG. 23B. Cytoplasmic calcium measured by Fluo-4 fluorescence. FRT cells were pretreated for 5 min with 10 pM lc (or control), with 100 pM ATP added as a calcium agonist as indicated. FIG. 23C. CaCC activity measured in HT-29 cells expressing YFP showing no activation (iodide addition) or inhibition (iodide+ATP addition) by 10 pM lc. FIG. 23D. TMEM16A activity measured in FRT cells expressing YFP showing no activation (iodide addition) or inhibition (iodide+ATP addition) by 10 pM lc.



FIG. 24. Efficacy of compound 1c in a mouse model of acute constipation. Order (left to right, top to bottom): Experimental protocol, 3-hour stool weight, pellet number and water content in mice treated with lc (orally) or vehicle 1 h before loperamide (mean±S.E.M., 4 mice per group).



FIG. 25. In vitro metabolic stability of lc. Remaining lc following incubation with mouse hepatic microsomes in the presence of NADPH, comparing with reference compound 4.





DETAILED DESCRIPTION OF THE INVENTION

The abbreviations used herein have their conventional meaning within the chemical and biological arts. The chemical structures and formulae set forth herein are constructed according to the standard rules of chemical valency known in the chemical arts.


Where substituent groups are specified by their conventional chemical formulae, written from left to right, they equally encompass the chemically identical substituents that would result from writing the structure from right to left, e.g., —CH2O— is equivalent to —OCH2-.


The term “alkyl,” by itself or as part of another substituent, means, unless otherwise stated, a straight (i.e., unbranched) or branched carbon chain (or carbon), or combination thereof, which may be fully saturated, mono- or polyunsaturated and can include mono-, di- and multivalent radicals, having the number of carbon atoms designated (i.e., C1-C10 means one to ten carbons). Alkyl is an uncyclized chain. Examples of saturated hydrocarbon radicals include, but are not limited to, groups such as methyl, ethyl, n-propyl, isopropyl, n-butyl, t-butyl, isobutyl, sec-butyl, (cyclohexyl)methyl, homologs and isomers of, for example, n-pentyl, n-hexyl, n-heptyl, n-octyl, and the like. An unsaturated alkyl group is one having one or more double bonds or triple bonds. Examples of unsaturated alkyl groups include, but are not limited to, vinyl, 2-propenyl, crotyl, 2-isopentenyl, 2-(butadienyl), 2,4-pentadienyl, 3-(1,4-pentadienyl), ethynyl, 1- and 3-propynyl, 3-butynyl, and the higher homologs and isomers. An alkoxy is an alkyl attached to the remainder of the molecule via an oxygen linker (—O—).


The term “alkylene,” by itself or as part of another substituent, means, unless otherwise stated, a divalent radical derived from an alkyl, as exemplified, but not limited by, —CH2CH2CH2CH2—. Typically, an alkyl (or alkylene) group will have from 1 to 24 carbon atoms, with those groups having 10 or fewer carbon atoms being preferred in the present invention. A “lower alkyl” or “lower alkylene” is a shorter chain alkyl or alkylene group, generally having eight or fewer carbon atoms. The term “alkenylene,” by itself or as part of another substituent, means, unless otherwise stated, a divalent radical derived from an alkene.


The term “heteroalkyl,” by itself or in combination with another term, means, unless otherwise stated, a stable straight or branched chain, or combinations thereof, including at least one carbon atom and at least one heteroatom (e.g., selected from the group consisting of O, N, P, Si, and S), and wherein the nitrogen and sulfur atoms may optionally be oxidized, and the nitrogen heteroatom may optionally be quaternized. The heteroatom(s) (e.g., O, N, P, S, B, As, and Si) may be placed at any interior position of the heteroalkyl group or at the position at which the alkyl group is attached to the remainder of the molecule. Heteroalkyl is an uncyclized chain. Examples include, but are not limited to: —CH2—CH2—O—CH3, —CH2—CH2—NH—CH3, —CH2—CH2—N(CH3)—CH3, —CH2—S—CH2—CH3, —CH2—CH2, —S(O)2—CH3, —CH2—CH2—S(O)2—CH3, —CH═CHO—CH3, —Si(CH3)3, —CH2—CH═N—OCH3, —CH═CH—N(CH3)—CH3, —O—CH3, —O—CH2—CH3, and —CN. Up to two or three heteroatoms may be consecutive, such as, for example, —CH2—NH—OCH3 and —CH2—O—Si(CH3)3.


Similarly, the term “heteroalkylene,” by itself or as part of another substituent, means, unless otherwise stated, a divalent radical derived from heteroalkyl, as exemplified, but not limited by, —CH2—CH2—S—CH2—CH2— and —CH2—S—CH2—CH2—NH—CH2—. For heteroalkylene groups, heteroatoms can also occupy either or both of the chain termini (e.g., alkyleneoxy, alkylenedioxy, alkyleneamino, alkylenediamino, and the like). Still further, for alkylene and heteroalkylene linking groups, no orientation of the linking group is implied by the direction in which the formula of the linking group is written. For example, the formula —C(O)2R′— represents both —C(O)2R′— and —R′C(O)2—. As described above, heteroalkyl groups, as used herein, include those groups that are attached to the remainder of the molecule through a heteroatom, such as —C(O)R′, —C(O)NR′, —NR′R″, —OR′, —SR′, and/or —SO2R′. Where “heteroalkyl” is recited, followed by recitations of specific heteroalkyl groups, such as —NR′R″ or the like, it will be understood that the terms heteroalkyl and —NR′R″ are not redundant or mutually exclusive. Rather, the specific heteroalkyl groups are recited to add clarity. Thus, the term “heteroalkyl” should not be interpreted herein as excluding specific heteroalkyl groups, such as —NR′R″ or the like.


The terms “cycloalkyl” and “heterocycloalkyl,” by themselves or in combination with other terms, mean, unless otherwise stated, cyclic versions of “alkyl” and “heteroalkyl,” respectively. Cycloalkyl and heteroalkyl are not aromatic. Additionally, for heterocycloalkyl, a heteroatom can occupy the position at which the heterocycle is attached to the remainder of the molecule. Examples of cycloalkyl include, but are not limited to, cyclopropyl, cyclobutyl, cyclopentyl, cyclohexyl, 1-cyclohexenyl, 3-cyclohexenyl, cycloheptyl, and the like. Examples of heterocycloalkyl include, but are not limited to, 1-(1,2,5,6-tetrahydropyridyl), 1-piperidinyl, 2-piperidinyl, 3-piperidinyl, 4-morpholinyl, 3-morpholinyl, tetrahydrofuran-2-yl, tetrahydrofuran-3-yl, tetrahydrothien-2-yl, tetrahydrothien-3-yl, 1-piperazinyl, 2-piperazinyl, and the like. A “cycloalkylene” and a “heterocycloalkylene,” alone or as part of another substituent, means a divalent radical derived from a cycloalkyl and heterocycloalkyl, respectively.


The terms “halo” or “halogen,” by themselves or as part of another substituent, mean, unless otherwise stated, a fluorine, chlorine, bromine, or iodine atom. Additionally, terms such as “haloalkyl” are meant to include monohaloalkyl and polyhaloalkyl. For example, the term “halo(C1-C4)alkyl” includes, but is not limited to, fluoromethyl, difluoromethyl, trifluoromethyl, 2,2,2-trifluoroethyl, 4-chlorobutyl, 3-bromopropyl, and the like.


The term “acyl” means, unless otherwise stated, —C(O)R where R is a substituted or unsubstituted alkyl, substituted or unsubstituted cycloalkyl, substituted or unsubstituted heteroalkyl, substituted or unsubstituted heterocycloalkyl, substituted or unsubstituted aryl, or substituted or unsubstituted heteroaryl.


The term “aryl” means, unless otherwise stated, a polyunsaturated, aromatic, hydrocarbon substituent, which can be a single ring or multiple rings (preferably from 1 to 3 rings) that are fused together (i.e., a fused ring aryl) or linked covalently. A fused ring aryl refers to multiple rings fused together wherein at least one of the fused rings is an aryl ring. The term “heteroaryl” refers to aryl groups (or rings) that contain at least one heteroatom such as N, O, or S, wherein the nitrogen and sulfur atoms are optionally oxidized, and the nitrogen atom(s) are optionally quaternized. Thus, the term “heteroaryl” includes fused ring heteroaryl groups (i.e., multiple rings fused together wherein at least one of the fused rings is a heteroaromatic ring). A 5,6-fused ring heteroarylene refers to two rings fused together, wherein one ring has 5 members and the other ring has 6 members, and wherein at least one ring is a heteroaryl ring. Likewise, a 6,6-fused ring heteroarylene refers to two rings fused together, wherein one ring has 6 members and the other ring has 6 members, and wherein at least one ring is a heteroaryl ring. And a 6,5-fused ring heteroarylene refers to two rings fused together, wherein one ring has 6 members and the other ring has 5 members, and wherein at least one ring is a heteroaryl ring. A heteroaryl group can be attached to the remainder of the molecule through a carbon or heteroatom. Non-limiting examples of aryl and heteroaryl groups include phenyl, naphthyl, pyrrolyl, pyrazolyl, pyridazinyl, triazinyl, pyrimidinyl, imidazolyl, pyrazinyl, purinyl, oxazolyl, isoxazolyl, thiazolyl, furyl, thienyl, pyridyl, pyrimidyl, benzothiazolyl, benzoxazoyl benzimidazolyl, benzofuran, isobenzofuranyl, indolyl, isoindolyl, benzothiophenyl, isoquinolyl, quinoxalinyl, quinolyl, 1-naphthyl, 2-naphthyl, 4-biphenyl, 1-pyrrolyl, 2-pyrrolyl, 3-pyrrolyl, 3-pyrazolyl, 2-imidazolyl, 4-imidazolyl, pyrazinyl, 2-oxazolyl, 4-oxazolyl, 2-phenyl-4-oxazolyl, 5-oxazolyl, 3-isoxazolyl, 4-isoxazolyl, 5-isoxazolyl, 2-thiazolyl, 4-thiazolyl, 5-thiazolyl, 2-furyl, 3-furyl, 2-thienyl, 3-thienyl, 2-pyridyl, 3-pyridyl, 4-pyridyl, 2-pyrimidyl, 4-pyrimidyl, 5-benzothiazolyl, purinyl, 2-benzimidazolyl, 5-indolyl, 1-isoquinolyl, 5-isoquinolyl, 2-quinoxalinyl, 5-quinoxalinyl, 3-quinolyl, and 6-quinolyl. Substituents for each of the above noted aryl and heteroaryl ring systems are selected from the group of acceptable substituents described below. An “arylene” and a “heteroarylene,” alone or as part of another substituent, mean a divalent radical derived from an aryl and heteroaryl, respectively. A heteroaryl group substituent may be a —O— bonded to a ring heteroatom nitrogen.


A “fused ring aryl-heterocycloalkyl” is an aryl fused to a heterocycloalkyl. A “fused ring heteroaryl-heterocycloalkyl” is a heteroaryl fused to a heterocycloalkyl. A “fused ring heterocycloalkyl-cycloalkyl” is a heterocycloalkyl fused to a cycloalkyl. A “fused ring heterocycloalkyl-heterocycloalkyl” is a heterocycloalkyl fused to another heterocycloalkyl. Fused ring aryl-heterocycloalkyl, fused ring heteroaryl-heterocycloalkyl, fused ring heterocycloalkyl-cycloalkyl, or fused ring heterocycloalkyl-heterocycloalkyl may each independently be unsubstituted or substituted with one or more of the substituents described herein. Fused ring aryl-heterocycloalkyl, fused ring heteroaryl-heterocycloalkyl, fused ring heterocycloalkyl-cycloalkyl, or fused ring heterocycloalkyl-heterocycloalkyl may each independently be named according to the size of each of the fused rings. Thus, for example, 6,5 aryl-heterocycloalkyl fused ring describes a 6 membered aryl moiety fused to a 5 membered heterocycloalkyl. Spirocyclic rings are two or more rings wherein adjacent rings are attached through a single atom. The individual rings within spirocyclic rings may be identical or different. Individual rings in spirocyclic rings may be substituted or unsubstituted and may have different substituents from other individual rings within a set of spirocyclic rings. Possible substituents for individual rings within spirocyclic rings are the possible substituents for the same ring when not part of spirocyclic rings (e.g. substituents for cycloalkyl or heterocycloalkyl rings). Spirocylic rings may be substituted or unsubstituted cycloalkyl, substituted or unsubstituted cycloalkylene, substituted or unsubstituted heterocycloalkyl or substituted or unsubstituted heterocycloalkylene and individual rings within a spirocyclic ring group may be any of the immediately previous list, including having all rings of one type (e.g. all rings being substituted heterocycloalkylene wherein each ring may be the same or different substituted heterocycloalkylene). When referring to a spirocyclic ring system, heterocyclic spirocyclic rings means a spirocyclic rings wherein at least one ring is a heterocyclic ring and wherein each ring may be a different ring. When referring to a spirocyclic ring system, substituted spirocyclic rings means that at least one ring is substituted and each substituent may optionally be different.


The term “oxo,” as used herein, means an oxygen that is double bonded to a carbon atom.


Each of the above terms (e.g., “alkyl,” “heteroalkyl,” “aryl,” and “heteroaryl”) includes both substituted and unsubstituted forms of the indicated radical. Preferred substituents for each type of radical are provided below.


Substituents for the alkyl and heteroalkyl radicals (including those groups often referred to as alkylene, alkenyl, heteroalkylene, heteroalkenyl, alkynyl, cycloalkyl, heterocycloalkyl, cycloalkenyl, and heterocycloalkenyl) can be one or more of a variety of groups selected from, but not limited to, —OR′, ═O, ═NR′, ═N—OR′, —NR′R″, —SR′, -halogen, —SiR′R″R′″, —OC(O)R′, —C(O)R′, —CO2R′, —CONR′R″, —OC(O)NR′R″, —NR″C(O)R′, —NR′—C(O)NR″R′″, —NR″C(O)2R′, —NR—C(NR′R″R′″)═NR″″, —NR—C(NR′R″)═NR′″, —S(O)R′, —S(O)2R′, —S(O)2NR′R″, -NRSO2R′, —NR′NR″R′″, —ONR′R″, —NR′C═(O)NR″NR′″R″″, —CN, —NO2, —NR′SO2R″, —NR′C═(O)R″, —NR′C(O)—OR″, —NR′OR″, in a number ranging from zero to (2m′+1), where m′ is the total number of carbon atoms in such radical. R, R′, R″, R′″, and R″″ each preferably independently refer to hydrogen, substituted or unsubstituted heteroalkyl, substituted or unsubstituted cycloalkyl, substituted or unsubstituted heterocycloalkyl, substituted or unsubstituted aryl (e.g., aryl substituted with 1-3 halogens), substituted or unsubstituted heteroaryl, substituted or unsubstituted alkyl, alkoxy, or thioalkoxy groups, or arylalkyl groups. When a compound of the invention includes more than one R group, for example, each of the R groups is independently selected as are each R′, R″, R′″, and R″″ group when more than one of these groups is present. When R′ and R″ are attached to the same nitrogen atom, they can be combined with the nitrogen atom to form a 4-, 5-, 6-, or 7-membered ring. For example, —NR′R″ includes, but is not limited to, 1-pyrrolidinyl and 4-morpholinyl. From the above discussion of substituents, one of skill in the art will understand that the term “alkyl” is meant to include groups including carbon atoms bound to groups other than hydrogen groups, such as haloalkyl (e.g., —CF3 and —CH2CF3) and acyl (e.g., —C(O)CH3, —C(O)CF3, —C(O)CH2OCH3, and the like).


Similar to the substituents described for the alkyl radical, substituents for the aryl and heteroaryl groups are varied and are selected from, for example: —OR′, —NR′R″, —SR′, -halogen, —SiR′R′R′″, —OC(O)R′, —C(O)R′, —CO2R′, —CONR′R″, —OC(O)NR′R″, —NR″C(O)R′, —NR′—C(O)NR″R′″, —NR″C(O)2R, —NR—C(NR′R″R′″)═NR″″, —NR—C(NR′R″)═NR′″, —S(O)R′, —S(O)2R′, —S(O)2NR′R″, —NRSO2R, —NR′NR″R″, —ONR′R″, —NR′C═(O)NR″NR′″R″″, —CN, —NO2, —R′, —N3, —CH(Ph)2, fluoro(C1-C4)alkoxy, and fluoro(C1-C4)alkyl, —NR′SO2R″, —NR′C═(O)R″, —NR′C(O)—OR″, —NR′OR″, in a number ranging from zero to the total number of open valences on the aromatic ring system; and where R′, R″, R′″, and R″″ are preferably independently selected from hydrogen, substituted or unsubstituted alkyl, substituted or unsubstituted heteroalkyl, substituted or unsubstituted cycloalkyl, substituted or unsubstituted heterocycloalkyl, substituted or unsubstituted aryl, and substituted or unsubstituted heteroaryl. When a compound of the invention includes more than one R group, for example, each of the R groups is independently selected as are each R′, R″, R′″, and R″″ groups when more than one of these groups is present.


Substituents for rings (e.g. cycloalkyl, heterocycloalkyl, aryl, heteroaryl, cycloalkylene, heterocycloalkylene, arylene, or heteroarylene) may be depicted as substituents on the ring rather than on a specific atom of a ring (commonly referred to as a floating substituent). In such a case, the substituent may be attached to any of the ring atoms (obeying the rules of chemical valency) and in the case of fused rings or spirocyclic rings, a substituent depicted as associated with one member of the fused rings or spirocyclic rings (a floating substituent on a single ring), may be a substituent on any of the fused rings or spirocyclic rings (a floating substituent on multiple rings). When a substituent is attached to a ring, but not a specific atom (a floating substituent), and a subscript for the substituent is an integer greater than one, the multiple substituents may be on the same atom, same ring, different atoms, different fused rings, different spirocyclic rings, and each substituent may optionally be different. Where a point of attachment of a ring to the remainder of a molecule is not limited to a single atom (a floating substituent), the attachment point may be any atom of the ring and in the case of a fused ring or spirocyclic ring, any atom of any of the fused rings or spirocyclic rings while obeying the rules of chemical valency. Where a ring, fused rings, or spirocyclic rings contain one or more ring heteroatoms and the ring, fused rings, or spirocyclic rings are shown with one more floating substituents (including, but not limited to, points of attachment to the remainder of the molecule), the floating substituents may be bonded to the heteroatoms. Where the ring heteroatoms are shown bound to one or more hydrogens (e.g. a ring nitrogen with two bonds to ring atoms and a third bond to a hydrogen) in the structure or formula with the floating substituent, when the heteroatom is bonded to the floating substituent, the substituent will be understood to replace the hydrogen, while obeying the rules of chemical valency.


Two or more substituents may optionally be joined to form aryl, heteroaryl, cycloalkyl, or heterocycloalkyl groups. Such so-called ring-forming substituents are typically, though not necessarily, found attached to a cyclic base structure. In one embodiment, the ring-forming substituents are attached to adjacent members of the base structure. For example, two ring-forming substituents attached to adjacent members of a cyclic base structure create a fused ring structure. In another embodiment, the ring-forming substituents are attached to a single member of the base structure. For example, two ring-forming substituents attached to a single member of a cyclic base structure create a spirocyclic structure. In yet another embodiment, the ring-forming substituents are attached to non-adjacent members of the base structure.


Two of the substituents on adjacent atoms of the aryl or heteroaryl ring may optionally form a ring of the formula -T-C(O)—(CRR′)q—U—, wherein T and U are independently —NR—, —O—, —CRR′—, or a single bond, and q is an integer of from 0 to 3. Alternatively, two of the substituents on adjacent atoms of the aryl or heteroaryl ring may optionally be replaced with a substituent of the formula -A-(CH2)r—B—, wherein A and B are independently —CRR′—, —O—, —NR—, —S—, —S(O)—, —S(O)2—, —S(O)2NR′—, or a single bond, and r is an integer of from 1 to 4. One of the single bonds of the new ring so formed may optionally be replaced with a double bond. Alternatively, two of the substituents on adjacent atoms of the aryl or heteroaryl ring may optionally be replaced with a substituent of the formula —(CRR′)s—X′—(C″R″R′″)d—, where s and d are independently integers of from 0 to 3, and X′ is —O—, —NR′—, —S—, —S(O)—, —S(O)2—, or —S(O)2NR′—. The substituents R, R′, R″, and R′″ are preferably independently selected from hydrogen, substituted or unsubstituted alkyl, substituted or unsubstituted heteroalkyl, substituted or unsubstituted cycloalkyl, substituted or unsubstituted heterocycloalkyl, substituted or unsubstituted aryl, and substituted or unsubstituted heteroaryl.


As used herein, the terms “heteroatom” or “ring heteroatom” are meant to include, oxygen (O), nitrogen (N), sulfur (S), phosphorus (P), Boron (B), Arsenic (As), and silicon (Si).


A “substituent group,” as used herein, means a group selected from the following moieties:


(A) oxo, halogen, —CF3, —CN, —OH, —NH2, —COOH, —CONH2, —NO2, —SH, —SO2Cl, —SO3H, —SO4H, —SO2NH2, —NHNH2, —ONH2, —NHC═(O)NHNH2, —NHC═(O) NH2, —NHSO2H, —NHC═(O)H, —NHC(O)—OH, —NHOH, —OCF3, —OCHF2, unsubstituted alkyl, unsubstituted heteroalkyl, unsubstituted cycloalkyl, unsubstituted heterocycloalkyl, unsubstituted aryl, unsubstituted heteroaryl, and


(B) alkyl, heteroalkyl, cycloalkyl, heterocycloalkyl, aryl, and heteroaryl, substituted with at least one substituent selected from:


(i) oxo, halogen, —CF3, —CN, —OH, —NH2, —COOH, —CONH2, —NO2, —SH, —SO2Cl, —SO3H, —SO4H, —SO2NH2, —NHNH2, —ONH2, —NHC═(O)NHNH2, —NHC═(O) NH2, —NHSO2H, —NHC═(O)H, —NHC(O)—OH, —NHOH, —OCF3, —OCHF2, unsubstituted alkyl, unsubstituted heteroalkyl, unsubstituted cycloalkyl, unsubstituted heterocycloalkyl, unsubstituted aryl, unsubstituted heteroaryl, and


(ii) alkyl, heteroalkyl, cycloalkyl, heterocycloalkyl, aryl, and heteroaryl, substituted with at least one substituent selected from:


(a) oxo, halogen, —CF3, —CN, —OH, —NH2, —COOH, —CONH2, —NO2, —SH, —SO2Cl, —SO3H, —SO4H, —SO2NH2, —NHNH2, —ONH2, —NHC═(O)NHNH2, —NHC═(O) NH2, —NHSO2H, —NHC═(O)H, —NHC(O)—OH, —NHOH, —OCF3, —OCHF2, unsubstituted alkyl, unsubstituted heteroalkyl, unsubstituted cycloalkyl, unsubstituted heterocycloalkyl, unsubstituted aryl, unsubstituted heteroaryl, and (b) alkyl, heteroalkyl, cycloalkyl, heterocycloalkyl, aryl, or heteroaryl, substituted with at least one substituent selected from: oxo, halogen, —CF3, —CN, —OH, —NH2, —COOH, —CONH2, —NO2, —SH, —SO2Cl, —SO3H, —SO4H, —SO2NH2, —NHNH2, —ONH2, —NHC═(O)NHNH2, —NHC═(O) NH2, —NHSO2H, —NHC═(O)H, —NHC(O)—OH, —NHOH, —OCF3, —OCHF2, unsubstituted alkyl, unsubstituted heteroalkyl, unsubstituted cycloalkyl, unsubstituted heterocycloalkyl, unsubstituted aryl, and unsubstituted heteroaryl.


A “size-limited substituent” or “size-limited substituent group,” as used herein, means a group selected from all of the substituents described above for a “substituent group,” wherein each substituted or unsubstituted alkyl is a substituted or unsubstituted C1-C20 alkyl, each substituted or unsubstituted heteroalkyl is a substituted or unsubstituted 2 to 20 membered heteroalkyl, each substituted or unsubstituted cycloalkyl is a substituted or unsubstituted C3-C8 cycloalkyl, each substituted or unsubstituted heterocycloalkyl is a substituted or unsubstituted 3 to 8 membered heterocycloalkyl, each substituted or unsubstituted aryl is a substituted or unsubstituted C6-C10 aryl, and each substituted or unsubstituted heteroaryl is a substituted or unsubstituted 5 to 10 membered heteroaryl.


A “lower substituent” or “lower substituent group,” as used herein, means a group selected from all of the substituents described above for a “substituent group,” wherein each substituted or unsubstituted alkyl is a substituted or unsubstituted C1-C8 alkyl, each substituted or unsubstituted heteroalkyl is a substituted or unsubstituted 2 to 8 membered heteroalkyl, each substituted or unsubstituted cycloalkyl is a substituted or unsubstituted C3-C7 cycloalkyl, each substituted or unsubstituted heterocycloalkyl is a substituted or unsubstituted 3 to 7 membered heterocycloalkyl, each substituted or unsubstituted aryl is a substituted or unsubstituted C6-C10 aryl, and each substituted or unsubstituted heteroaryl is a substituted or unsubstituted 5 to 9 membered heteroaryl.


In some embodiments, each substituted group described in the compounds herein is substituted with at least one substituent group. More specifically, in some embodiments, each substituted alkyl, substituted heteroalkyl, substituted cycloalkyl, substituted heterocycloalkyl, substituted aryl, substituted heteroaryl, substituted alkylene, substituted heteroalkylene, substituted cycloalkylene, substituted heterocycloalkylene, substituted arylene, and/or substituted heteroarylene described in the compounds herein are substituted with at least one substituent group. In other embodiments, at least one or all of these groups are substituted with at least one size-limited substituent group. In other embodiments, at least one or all of these groups are substituted with at least one lower substituent group.


In other embodiments of the compounds herein, each substituted or unsubstituted alkyl may be a substituted or unsubstituted C1-C20 alkyl, each substituted or unsubstituted heteroalkyl is a substituted or unsubstituted 2 to 20 membered heteroalkyl, each substituted or unsubstituted cycloalkyl is a substituted or unsubstituted C3-C8 cycloalkyl, each substituted or unsubstituted heterocycloalkyl is a substituted or unsubstituted 3 to 8 membered heterocycloalkyl, each substituted or unsubstituted aryl is a substituted or unsubstituted C6-C10 aryl, and/or each substituted or unsubstituted heteroaryl is a substituted or unsubstituted 5 to 10 membered heteroaryl. In some embodiments of the compounds herein, each substituted or unsubstituted alkylene is a substituted or unsubstituted C1-C20 alkylene, each substituted or unsubstituted heteroalkylene is a substituted or unsubstituted 2 to 20 membered heteroalkylene, each substituted or unsubstituted cycloalkylene is a substituted or unsubstituted C3-C8 cycloalkylene, each substituted or unsubstituted heterocycloalkylene is a substituted or unsubstituted 3 to 8 membered heterocycloalkylene, each substituted or unsubstituted arylene is a substituted or unsubstituted C6-C10 arylene, and/or each substituted or unsubstituted heteroarylene is a substituted or unsubstituted 5 to 10 membered heteroarylene.


In some embodiments, each substituted or unsubstituted alkyl is a substituted or unsubstituted C1-C8 alkyl, each substituted or unsubstituted heteroalkyl is a substituted or unsubstituted 2 to 8 membered heteroalkyl, each substituted or unsubstituted cycloalkyl is a substituted or unsubstituted C3-C7 cycloalkyl, each substituted or unsubstituted heterocycloalkyl is a substituted or unsubstituted 3 to 7 membered heterocycloalkyl, each substituted or unsubstituted aryl is a substituted or unsubstituted C6-C10 aryl, and/or each substituted or unsubstituted heteroaryl is a substituted or unsubstituted 5 to 9 membered heteroaryl. In some embodiments, each substituted or unsubstituted alkylene is a substituted or unsubstituted C1-C8 alkylene, each substituted or unsubstituted heteroalkylene is a substituted or unsubstituted 2 to 8 membered heteroalkylene, each substituted or unsubstituted cycloalkylene is a substituted or unsubstituted C3-C7 cycloalkylene, each substituted or unsubstituted heterocycloalkylene is a substituted or unsubstituted 3 to 7 membered heterocycloalkylene, each substituted or unsubstituted arylene is a substituted or unsubstituted C6-C10 arylene, and/or each substituted or unsubstituted heteroarylene is a substituted or unsubstituted 5 to 9 membered heteroarylene. In some embodiments, the compound is a chemical species set forth in the Examples section, figures, or tables below.


Certain compounds described herein possess asymmetric carbon atoms (optical or chiral centers) or double bonds; the enantiomers, racemates, diastereomers, tautomers, geometric isomers, stereoisomeric forms that may be defined, in terms of absolute stereochemistry, as (R)- or (S)- or, as (D)- or (L)- for amino acids, and individual isomers are encompassed within the scope of the present invention. The compounds of the present invention do not include those which are known in art to be too unstable to synthesize and/or isolate. The present invention is meant to include compounds in racemic and optically pure forms. Optically active (R)- and (S)-, or (D)- and (L)-isomers may be prepared using chiral synthons or chiral reagents, or resolved using conventional techniques. When the compounds described herein contain olefinic bonds or other centers of geometric asymmetry, and unless specified otherwise, it is intended that the compounds include both E and Z geometric isomers.


As used herein, the term “isomers” refers to compounds having the same number and kind of atoms, and hence the same molecular weight, but differing in respect to the structural arrangement or configuration of the atoms.


The term “tautomer,” as used herein, refers to one of two or more structural isomers which exist in equilibrium and which are readily converted from one isomeric form to another.


It will be apparent to one skilled in the art that certain compounds of this invention may exist in tautomeric forms, all such tautomeric forms of the compounds being within the scope of the invention.


Unless otherwise stated, structures depicted herein are also meant to include all stereochemical forms of the structure; i.e., the (R) and (S) configurations for each asymmetric center.


Therefore, single stereochemical isomers as well as enantiomeric and diastereomeric mixtures of the present compounds, generally recognized as stable by those skilled in the art, are within the scope of the invention.


Unless otherwise stated, structures depicted herein are also meant to include compounds which differ only in the presence of one or more isotopically enriched atoms. For example, compounds having the present structures except for the replacement of a hydrogen by a deuterium or tritium, replacement of fluoride by 18F, or the replacement of a carbon by 13C- or 14C-enriched carbon are within the scope of this invention.


The compounds of the present invention may also contain unnatural proportions of atomic isotopes at one or more of the atoms that constitute such compounds. For example, the compounds may be radiolabeled with radioactive isotopes, such as for example tritium (3H), fluoride (18F), iodine-125 (125I), or carbon-14 (14C). All isotopic variations of the compounds of the present invention, whether radioactive or not, are encompassed within the scope of the present invention.


The symbol “custom-character” denotes the point of attachment of a chemical moiety to the remainder of a molecule or chemical formula.


Where a moiety is substituted with an R substituent, the group may be referred to as “R-substituted.” Where a moiety is R-substituted, the moiety is substituted with at least one R substituent and each R substituent is optionally different. Where a particular R group is present in the description of a chemical genus (such as Formula (I)), a Roman decimal symbol may be used to distinguish each appearance of that particular R group. For example, where multiple R13 substituents are present, each R13 substituent may be distinguished as R13,1, R13,2, R13,3, R13,4, etc., wherein each of R13,1, R13,2, R13,3, R13,4, etc. is defined within the scope of the definition of R13 and optionally differently. The terms “a” or “an,” as used in herein means one or more. In addition, the phrase “substituted with a[n],” as used herein, means the specified group may be substituted with one or more of any or all of the named substituents. For example, where a group, such as an alkyl or heteroaryl group, is “substituted with an unsubstituted C1-C20 alkyl, or unsubstituted 2 to 20 membered heteroalkyl,” the group may contain one or more unsubstituted C1-C20 alkyls, and/or one or more unsubstituted 2 to 20 membered heteroalkyls.


Description of compounds of the present invention is limited by principles of chemical bonding known to those skilled in the art. Accordingly, where a group may be substituted by one or more of a number of substituents, such substitutions are selected so as to comply with principles of chemical bonding and to give compounds which are not inherently unstable and/or would be known to one of ordinary skill in the art as likely to be unstable under ambient conditions, such as aqueous, neutral, and several known physiological conditions. For example, a heterocycloalkyl or heteroaryl is attached to the remainder of the molecule via a ring heteroatom in compliance with principles of chemical bonding known to those skilled in the art thereby avoiding inherently unstable compounds.


“Analog,” or “analogue” are used in accordance with plain ordinary meaning within Chemistry and Biology and refer to a chemical compound that is structurally similar to another compound (i.e., a so-called “reference” compound) but differs in composition, e.g., in the replacement of one atom by an atom of a different element, or in the presence of a particular functional group, or the replacement of one functional group by another functional group, or the absolute stereochemistry of one or more chiral centers of the reference compound. Accordingly, an analogue is a compound that is similar or comparable in function and appearance but not in structure or origin to a reference compound.


The terms “cystic fibrosis transmembrane conductance regulator,” and “CFTR” are here used interchangeably and according to their common, ordinary meaning and refer to proteins of the same or similar names and functional fragments and homologs thereof. The term includes any recombinant or naturally occurring form of, or variants thereof that maintain CFTR activity (e.g. within at least 30%, 40%, 50%, 60%, 70%, 80%, 90%, 95%, or 100% activity compared to CFTR).


The term “pharmaceutically acceptable salts” is meant to include salts of the active compounds that are prepared with relatively nontoxic acids or bases, depending on the particular substituents found on the compounds described herein. When compounds of the present invention contain relatively acidic functionalities, base addition salts can be obtained by contacting the neutral form of such compounds with a sufficient amount of the desired base, either neat or in a suitable inert solvent. Examples of pharmaceutically acceptable base addition salts include sodium, potassium, calcium, ammonium, organic amino, or magnesium salt, or a similar salt. When compounds of the present invention contain relatively basic functionalities, acid addition salts can be obtained by contacting the neutral form of such compounds with a sufficient amount of the desired acid, either neat or in a suitable inert solvent. Examples of pharmaceutically acceptable acid addition salts include those derived from inorganic acids like hydrochloric, hydrobromic, nitric, carbonic, monohydrogencarbonic, phosphoric, monohydrogenphosphoric, dihydrogenphosphoric, sulfuric, monohydrogensulfuric, hydriodic, or phosphorous acids and the like, as well as the salts derived from relatively nontoxic organic acids like acetic, propionic, isobutyric, maleic, malonic, benzoic, succinic, suberic, fumaric, lactic, mandelic, phthalic, benzenesulfonic, p-tolylsulfonic, citric, tartaric, oxalic, methanesulfonic, and the like. Also included are salts of amino acids such as arginate and the like, and salts of organic acids like glucuronic or galactunoric acids and the like (see, for example, Berge et al., “Pharmaceutical Salts”, Journal of Pharmaceutical Science, 1977, 66, 1-19). Certain specific compounds of the present invention contain both basic and acidic functionalities that allow the compounds to be converted into either base or acid addition salts.


Thus, the compounds of the present invention may exist as salts, such as with pharmaceutically acceptable acids. The present invention includes such salts. Examples of such salts include hydrochlorides, hydrobromides, sulfates, methanesulfonates, nitrates, maleates, acetates, citrates, fumarates, tartrates (e.g., (+)-tartrates, (−)-tartrates, or mixtures thereof including racemic mixtures), succinates, benzoates, and salts with amino acids such as glutamic acid. These salts may be prepared by methods known to those skilled in the art.


The neutral forms of the compounds are preferably regenerated by contacting the salt with a base or acid and isolating the parent compound in the conventional manner. The parent form of the compound differs from the various salt forms in certain physical properties, such as solubility in polar solvents.


In addition to salt forms, the present invention provides compounds, which are in a prodrug form. Prodrugs of the compounds described herein include those compounds that readily undergo chemical or enzymatic changes under physiological conditions to provide the compounds of the present invention. Additionally, prodrugs can be converted to the compounds of the present invention by chemical or biochemical methods in an ex vivo environment. For example, prodrugs can be slowly converted to the compounds of the present invention when placed in a transdermal patch reservoir with a suitable enzyme or chemical reagent.


Certain compounds of the present invention can exist in unsolvated forms as well as solvated forms, including hydrated forms. In general, the solvated forms are equivalent to unsolvated forms and are encompassed within the scope of the present invention. Certain compounds of the present invention may exist in multiple crystalline or amorphous forms. In general, all physical forms are equivalent for the uses contemplated by the present invention and are intended to be within the scope of the present invention.


As used herein, the term “salt” refers to acid or base salts of the compounds used in the methods of the present invention. Illustrative examples of acceptable salts are mineral acid (hydrochloric acid, hydrobromic acid, phosphoric acid, and the like) salts, organic acid (acetic acid, propionic acid, glutamic acid, citric acid and the like) salts, quaternary ammonium (methyl iodide, ethyl iodide, and the like) salts.


The terms “treating”, or “treatment” refer to any indicia of success in the treatment or amelioration of an injury, disease, pathology or condition, including any objective or subjective parameter such as abatement; remission; diminishing of symptoms or making the injury, pathology or condition more tolerable to the patient; slowing in the rate of degeneration or decline; making the final point of degeneration less debilitating; or improving a patient's physical or mental well-being. The treatment or amelioration of symptoms can be based on objective or subjective parameters, including the results of a physical examination, neuropsychiatric exams, and/or a psychiatric evaluation. The term “treating” and conjugations thereof, include prevention of an injury, pathology, condition, or disease.


An “effective amount” is an amount sufficient to accomplish a stated purpose (e.g. achieve the effect for which it is administered, treat a disease, reduce enzyme activity, increase enzyme activity, reduce one or more symptoms of a disease or condition). An example of an “effective amount” is an amount sufficient to contribute to the treatment, prevention, or reduction of a symptom or symptoms of a disease, which could also be referred to as a “therapeutically effective amount.” A “reduction” of a symptom or symptoms (and grammatical equivalents of this phrase) means decreasing of the severity or frequency of the symptom(s), or elimination of the symptom(s). A “prophylactically effective amount” of a drug is an amount of a drug that, when administered to a subject, will have the intended prophylactic effect, e.g., preventing or delaying the onset (or reoccurrence) of an injury, disease, pathology or condition, or reducing the likelihood of the onset (or reoccurrence) of an injury, disease, pathology, or condition, or their symptoms. The full prophylactic effect does not necessarily occur by administration of one dose, and may occur only after administration of a series of doses. Thus, a prophylactically effective amount may be administered in one or more administrations. The exact amounts will depend on the purpose of the treatment, and will be ascertainable by one skilled in the art using known techniques (see, e.g., Lieberman, Pharmaceutical Dosage Forms (vols. 1-3, 1992); Lloyd, The Art, Science and Technology of Pharmaceutical Compounding (1999); Pickar, Dosage Calculations (1999); and Remington: The Science and Practice of Pharmacy, 20th Edition, 2003, Gennaro, Ed., Lippincott, Williams & Wilkins).


For any compound described herein, the therapeutically effective amount can be initially determined from cell culture assays. Target concentrations will be those concentrations of active compound(s) that are capable of achieving the methods described herein, as measured using the methods described herein or known in the art.


As is well known in the art, therapeutically effective amounts for use in humans can also be determined from animal models. For example, a dose for humans can be formulated to achieve a concentration that has been found to be effective in animals. The dosage in humans can be adjusted by monitoring compounds effectiveness and adjusting the dosage upwards or downwards, as described above. Adjusting the dose to achieve maximal efficacy in humans based on the methods described above and other methods is well within the capabilities of the ordinarily skilled artisan.


Dosages may be varied depending upon the requirements of the patient and the compound being employed. The dose administered to a patient, in the context of the present invention should be sufficient to effect a beneficial therapeutic response in the patient over time. The size of the dose also will be determined by the existence, nature, and extent of any adverse side-effects. Determination of the proper dosage for a particular situation is within the skill of the practitioner. Generally, treatment is initiated with smaller dosages which are less than the optimum dose of the compound. Thereafter, the dosage is increased by small increments until the optimum effect under circumstances is reached.


Dosage amounts and intervals can be adjusted individually to provide levels of the administered compound effective for the particular clinical indication being treated. This will provide a therapeutic regimen that is commensurate with the severity of the individual's disease state.


Utilizing the teachings provided herein, an effective prophylactic or therapeutic treatment regimen can be planned that does not cause substantial toxicity and yet is effective to treat the clinical symptoms demonstrated by the particular patient. This planning should involve the careful choice of active compound by considering factors such as compound potency, relative bioavailability, patient body weight, presence and severity of adverse side effects, preferred mode of administration and the toxicity profile of the selected agent.


“Control” or “control experiment” is used in accordance with its plain ordinary meaning and refers to an experiment in which the subjects or reagents of the experiment are treated as in a parallel experiment except for omission of a procedure, reagent, or variable of the experiment. In some instances, the control is used as a standard of comparison in evaluating experimental effects. In embodiments, a control is the measurement of the activity of a protein in the absence of a compound as described herein (including embodiments and examples).


“Contacting” is used in accordance with its plain ordinary meaning and refers to the process of allowing at least two distinct species (e.g. chemical compounds including biomolecules or cells) to become sufficiently proximal to react, interact or physically touch. It should be appreciated; however, the resulting reaction product can be produced directly from a reaction between the added reagents or from an intermediate from one or more of the added reagents which can be produced in the reaction mixture.


The term “contacting” may include allowing two species to react, interact, or physically touch, wherein the two species may be a compound as described herein and a protein or enzyme. Contacting may include allowing a compound described herein to interact with a protein or enzyme that is involved in a signaling pathway.


As defined herein, the term “activation,” “activate,” “activating” and the like in reference to a protein-activator interaction means positively affecting (e.g. increasing) the activity or function of the protein relative to the activity or function of the protein in the absence of the activator. Activation may refer to reduction of a disease or symptoms of disease. Activation may refer to an increase in the activity of a particular protein or nucleic acid target. The protein may be cystic fibrosis transmembrane conductance regulator. Thus, activation includes, at least in part, partially or totally increasing stimulation, increasing, promoting, or expediting activation, or activating, sensitizing, or up-regulating signal transduction or enzymatic activity or the amount of a protein.


The term “modulator” refers to a composition that increases or decreases the level of a target molecule or the function of a target molecule or the physical state of the target of the molecule.


The term “modulate” is used in accordance with its plain ordinary meaning and refers to the act of changing or varying one or more properties. “Modulation” refers to the process of changing or varying one or more properties. For example, a modulator of a target protein changes by increasing or decreasing a property or function of the target molecule or the amount of the target molecule. A modulator of a disease decreases a symptom, cause, or characteristic of the targeted disease.


“Selective” or “selectivity” or the like of a compound refers to the compound's ability to discriminate between molecular targets. “Specific”, “specifically”, “specificity”, or the like of a compound refers to the compound's ability to cause a particular action, such as inhibition, to a particular molecular target with minimal or no action to other proteins in the cell.


“Pharmaceutically acceptable excipient” and “pharmaceutically acceptable carrier” refer to a substance that aids the administration of an active agent to and absorption by a subject and can be included in the compositions of the present invention without causing a significant adverse toxicological effect on the patient. Non-limiting examples of pharmaceutically acceptable excipients include water, NaCl, normal saline solutions, lactated Ringer's, normal sucrose, normal glucose, binders, fillers, disintegrants, lubricants, coatings, sweeteners, flavors, salt solutions (such as Ringer's solution), alcohols, oils, gelatins, carbohydrates such as lactose, amylose or starch, fatty acid esters, hydroxymethylcellulose, polyvinyl pyrrolidine, and colors, and the like. Such preparations can be sterilized and, if desired, mixed with auxiliary agents such as lubricants, preservatives, stabilizers, wetting agents, emulsifiers, salts for influencing osmotic pressure, buffers, coloring, and/or aromatic substances and the like that do not deleteriously react with the compounds of the invention. One of skill in the art will recognize that other pharmaceutical excipients are useful in the present invention.


The term “preparation” is intended to include the formulation of the active compound with encapsulating material as a carrier providing a capsule in which the active component with or without other carriers, is surrounded by a carrier, which is thus in association with it. Similarly, cachets and lozenges are included. Tablets, powders, capsules, pills, cachets, and lozenges can be used as solid dosage forms suitable for oral administration.


As used herein, the term “administering” means oral administration, administration as a suppository, topical contact, intravenous, parenteral, intraperitoneal, intramuscular, intralesional, intrathecal, intranasal or subcutaneous administration, or the implantation of a slow-release device, e.g., a mini-osmotic pump, to a subject. Administration is by any route, including parenteral and transmucosal (e.g., buccal, sublingual, palatal, gingival, nasal, vaginal, rectal, or transdermal). Parenteral administration includes, e.g., intravenous, intramuscular, intra-arteriole, intradermal, subcutaneous, intraperitoneal, intraventricular, and intracranial. Other modes of delivery include, but are not limited to, the use of liposomal formulations, intravenous infusion, transdermal patches, etc.


The compositions disclosed herein can be delivered by transdermally, by a topical route, formulated as applicator sticks, solutions, suspensions, emulsions, gels, creams, ointments, pastes, jellies, paints, powders, and aerosols. Oral preparations include tablets, pills, powder, dragees, capsules, liquids, lozenges, cachets, gels, syrups, slurries, suspensions, etc., suitable for ingestion by the patient. Solid form preparations include powders, tablets, pills, capsules, cachets, suppositories, and dispersible granules. Liquid form preparations include solutions, suspensions, and emulsions, for example, water or water/propylene glycol solutions. The compositions of the present invention may additionally include components to provide sustained release and/or comfort. Such components include high molecular weight, anionic mucomimetic polymers, gelling polysaccharides and finely-divided drug carrier substrates. These components are discussed in greater detail in U.S. Pat. Nos. 4,911,920; 5,403,841; 5,212,162; and 4,861,760. The entire contents of these patents are incorporated herein by reference in their entirety for all purposes. The compositions disclosed herein can also be delivered as microspheres for slow release in the body. For example, microspheres can be administered via intradermal injection of drug-containing microspheres, which slowly release subcutaneously (see Rao, J. Biomater Set. Polym. Ed. 7:623-645, 1995; as biodegradable and injectable gel formulations (see, e.g., Gao Pharm. Res. 12:857-863, 1995); or, as microspheres for oral administration (see, e.g., Eyles, J. Pharm. Pharmacol. 49:669-674, 1997). In another embodiment, the formulations of the compositions of the present invention can be delivered by the use of liposomes which fuse with the cellular membrane or are endocytosed, i.e., by employing receptor ligands attached to the liposome, that bind to surface membrane protein receptors of the cell resulting in endocytosis. By using liposomes, particularly where the liposome surface carries receptor ligands specific for target cells, or are otherwise preferentially directed to a specific organ, one can focus the delivery of the compositions of the present invention into the target cells in vivo. (See, e.g., Al-Muhammed, J. Microencapsul. 13:293-306, 1996; Chonn, Curr. Opin. Biotechnol. 6:698-708, 1995; Ostro, Am. J. Hosp. Pharm. 46:1576-1587, 1989). The compositions can also be delivered as nanoparticles.


Pharmaceutical compositions may include compositions wherein the active ingredient (e.g. compounds described herein, including embodiments or examples) is contained in a therapeutically effective amount, i.e., in an amount effective to achieve its intended purpose. The actual amount effective for a particular application will depend, inter alia, on the condition being treated. When administered in methods to treat a disease, such compositions will contain an amount of active ingredient effective to achieve the desired result, e.g., modulating the activity of a target molecule, and/or reducing, eliminating, or slowing the progression of disease symptoms.


The dosage and frequency (single or multiple doses) administered to a mammal can vary depending upon a variety of factors, for example, whether the mammal suffers from another disease, and its route of administration; size, age, sex, health, body weight, body mass index, and diet of the recipient; nature and extent of symptoms of the disease being treated, kind of concurrent treatment, complications from the disease being treated or other health-related problems. Other therapeutic regimens or agents can be used in conjunction with the methods and compounds of Applicants' invention. Adjustment and manipulation of established dosages (e.g., frequency and duration) are well within the ability of those skilled in the art.


The compounds described herein can be used in combination with one another, with other active drugs known to be useful in treating a disease (e.g. anticonstipation, anti-dry eye, anti-pulmonary disease or disorder, or anti-liver disease) or with adjunctive agents that may not be effective alone, but may contribute to the efficacy of the active agent. Thus, the compounds described herein may be co-administered with one another or with other active drugs known to be useful in treating a disease.


By “co-administer” it is meant that a compound described herein is administered at the same time, just prior to, or just after the administration of one or more additional therapies, for example, an anti-constipation or anti-dry eye agent as described herein. The compounds described herein can be administered alone or can be co-administered to the patient. Co-administration is meant to include simultaneous or sequential administration of the compound individually or in combination (more than one compound or agent). Thus, the preparations can also be combined, when desired, with other active substances (e.g. anti-constipation or anti-dry eye agents).


Co-administration includes administering one active agent (e.g. a complex described herein) within 0.5, 1, 2, 4, 6, 8, 10, 12, 16, 20, or 24 hours of a second active agent (e.g. anti-constipation or anti-dry eye agents). Also contemplated herein, are embodiments, where co-administration includes administering one active agent within 0.5, 1, 2, 4, 6, 8, 10, 12, 16, 20, or 24 hours of a second active agent. Co-administration includes administering two active agents simultaneously, approximately simultaneously (e.g., within about 1, 5, 10, 15, 20, or 30 minutes of each other), or sequentially in any order. Co-administration can be accomplished by co-formulation, i.e., preparing a single pharmaceutical composition including both active agents. In other embodiments, the active agents can be formulated separately. The active and/or adjunctive agents may be linked or conjugated to one another. The compounds described herein may be combined with treatments for constipation and dry eye disorders.


The term “associated” or “associated with” in the context of a substance or substance activity or function associated with a disease means that the disease is caused by (in whole or in part), a symptom of the disease is caused by (in whole or in part) the substance or substance activity or function, or a side-effect of the compound (e.g. toxicity) is caused by (in whole or in part) the substance or substance activity or function.


“Patient,” “subject,” “patient in need thereof,” and “subject in need thereof” are herein used interchangeably and refer to a living organism suffering from or prone to a disease or condition that can be treated by administration of a pharmaceutical composition as provided herein. Non-limiting examples include humans, other mammals, bovines, rats, mice, dogs, monkeys, goat, sheep, cows, deer, and other non-mammalian animals. In some embodiments, a patient is human.


“Disease” or “condition” refer to a state of being or health status of a patient or subject capable of being treated with the compounds or methods provided herein. Disease as used herein may refer to constipation or dry eye disorders.


Examples of anti-constipation agents include, but are not limited to diphenylmethanes, Lactobacillus paracasei, linaclotide and lubiprostone. Examples of anti-dry eye agents include, but are not limited to, topical cyclosporine, P321 (an ENaC inhibitor) and Diquafosol.


I. COMPOSITIONS

Provided herein are compounds having the formula (I):




embedded image


or a pharmaceutically acceptable salt thereof. L1 is a bond, —S—, —N(R15)— (e.g. —NH—), —C(O)N(R15)—, or substituted or unsubstituted alkylene. R20 is substituted or unsubstituted heterocycloalkyl, substituted or unsubstituted aryl or substituted or unsubstituted heteroaryl; or -L1-R20 is unsubstituted C2 or greater alkyl (e.g. unsubstituted C2-C10, unsubstituted C2-C6, unsubstituted C2-C5 or unsubstituted C2-C4 alkyl). L1-R20 is unsubstituted C2-C4 alkyl. R1 is hydrogen, halogen, —CX1,13, —CHX1,12, —CH2X1,1, —CN, —SOn1R1A, —SOv1NR1BR1C, —NHNR1BR1C, —ONR1BR1C, —NHC(O)NHNR1BR1C, —NHC(O)NR1BR1C, —N(O)m1, —NR1BR1C, —C(O)R1D, —C(O)OR1D, —C(O)NR1BR1C, —OR1A, —NR1BSO2R1A, —NR1BC(O)R1D, —NR1BC(O)OR1D, —NR1BOR1D, —OCX1,13, —OCHX1,12, substituted or unsubstituted alkyl, substituted or unsubstituted heteroalkyl, substituted or unsubstituted cycloalkyl, substituted or unsubstituted heterocycloalkyl, substituted or unsubstituted aryl, or substituted or unsubstituted heteroaryl. R2 is hydrogen, halogen, —CX2,13, —CHX2,12, —CH2X2,1, —CN, —SOn2R2A, —SOv2NR2BR2C, —NHNR2BR2C, —ONR2BR2C, —NHC(O)NHNR2BR2C, —NHC(O)NR2BR2C, —N(O)m2, —NR2BR2C, —C(O)R2D, —C(O)OR2D, —C(O)NR2BR2C, —OR2A, —NR2BSO2R2A, —NR2BC(O)R2D, —NR2BC(O)OR2D, —NR2BOR2D, —OCX2,13, —OCHX2,12, substituted or unsubstituted alkyl, substituted or unsubstituted heteroalkyl, substituted or unsubstituted cycloalkyl, substituted or unsubstituted heterocycloalkyl, substituted or unsubstituted aryl, or substituted or unsubstituted heteroaryl. R3 is hydrogen, halogen, —CX3,13, —CHX3,12, —CH2X3,1, —CN, —SOn3R3A, —SOv3NR3BR3C, —NHNR3BR3C, —ONR3BR3C, —NHC(O)NHNR3BR3C, —NHC(O)NR3BR3C, —N(O)m3, —NR3BR3C, —C(O)R3D, —C(O)OR3D, —C(O)NR3BR3C, —OR3A, —NR3BSO2R3A, —NR3BC(O)R3D, —NR3BC(O)OR3D, —NR3BOR3D, —OCX3,13, —OCHX3,12, substituted or unsubstituted alkyl, substituted or unsubstituted heteroalkyl, substituted or unsubstituted cycloalkyl, substituted or unsubstituted heterocycloalkyl, substituted or unsubstituted aryl, or substituted or unsubstituted heteroaryl. R4 is hydrogen, halogen, —CX4,13, —CHX4,12, —CH2X4,1, —CN, —SOn4R4A, —SOv4NR4BR4C, —NHNR4BR4C, —ONR4BR4C, —NHC(O)NHNR4BR4C, —NHC(O)NR4BR4C, —N(O)m4, —NR4BR4C, —C(O)R4D, —C(O)OR4D, —C(O)NR4BR4C, —OR4A, —NR4BSO2R4A, —NR4BC(O)R4D, —NR4BC(O)OR4D, —NR4BOR4D, —OCX4,13, —OCHX4,12, substituted or unsubstituted alkyl, substituted or unsubstituted heteroalkyl, substituted or unsubstituted cycloalkyl, substituted or unsubstituted heterocycloalkyl, substituted or unsubstituted aryl, or substituted or unsubstituted heteroaryl. R5 is hydrogen, halogen, —CX5,13, —CHX5,12, —CH2X5,1, —CN, —SOn5R5A, —SOv5NR5BR5C, —NHNR5BR5C, —ONR5BR5C, —NHC(O)NHNR5BR5C, —NHC(O)NR5BR5C, —N(O)m5, —NR5BR5C, —C(O)R5D, —C(O)OR5D, —C(O)NR5BR5C, —OR5A, —NR5BSO2R5A, —NR5BC(O)R5D, —NR5BC(O)OR5D, —NR5BOR5D, —OCX5,13, —OCHX5,12, substituted or unsubstituted alkyl, substituted or unsubstituted heteroalkyl, substituted or unsubstituted cycloalkyl, substituted or unsubstituted heterocycloalkyl, substituted or un substituted aryl, or substituted or unsubstituted heteroaryl. R1 and R2, R2 and R3, R3 and R4, or R1 and R5 are optionally joined to form, together with the atoms to which they are attached, substituted or unsubstituted cycloalkyl, substituted or unsubstituted heterocycloalkyl, substituted or un substituted aryl, or substituted or unsubstituted heteroaryl. R6 is hydrogen, halogen, —CX6,13, —CHX6,12, —CH2X6,1, —CN, —SOn6R6A, —SOv6NR6BR6C, —NHNR6BR6C, —ONR6BR6C, —NHC(O)NHNR6BR6C, —NHC(O)NR6BR6C, —N(O)m6, —NR6BR6C, —C(O)R6D, —C(O)OR6D, —C(O)NR6BR6C, —OR6A, —NR6BSO2R6A, —NR6BC(O)R6D, —NR6BC(O)OR6D, —NR6BOR6D, —OCX6,13, —OCHX6,12, substituted or unsubstituted alkyl, substituted or unsubstituted heteroalkyl, substituted or unsubstituted cycloalkyl, substituted or unsubstituted heterocycloalkyl, substituted or unsubstituted aryl, or substituted or unsubstituted heteroaryl. R7 is hydrogen, halogen, —CX7,13, —CHX7,12, —CH2X7,1, —CN, —SOn7R7A, —SOv7NR7BR7C, —NHNR7BR7C, —ONR7BR7C, —NHC(O)NHNR7BR7C, —NHC(O)NR7BR7C, —N(O)m7, —NR7BR7C, —C(O)R7D, —C(O)OR7D, —C(O)NR7BR7C, —OR7A, —NR7BSO2R7A, —NR7AC(O)R7C, —NR7BC(O)OR7D, —NR7BOR7D, —OCX7,13, —OCHX7,12, substituted or unsubstituted alkyl, substituted or unsubstituted heteroalkyl, substituted or unsubstituted cycloalkyl, substituted or unsubstituted heterocycloalkyl, substituted or unsubstituted aryl, or substituted or unsubstituted heteroaryl. R8 is hydrogen, halogen, —CX8,13, —CHX8,12, —CH2X8,1, —CN, —SOn8R8A, —SOv8NR8BR8C, —NHNR8BR8C, —ONR8BR8C, —NHC(O)NHNR8BR8C, —NHC(O)NR8BR8C, —N(O)m8, —NR8BR8C, —C(O)R8D, —C(O)OR8D, —C(O)NR8BR8C, —OR8A, —NR8BSO2R8A, —NR8BC(O)R8D, —NR8BC(O)OR8D, —NR8BOR8D, —OCX8,13, —OCHX8,12, substituted or unsubstituted alkyl, substituted or unsubstituted heteroalkyl, substituted or unsubstituted cycloalkyl, substituted or unsubstituted heterocycloalkyl, substituted or unsubstituted aryl, or substituted or un substituted heteroaryl. R9 is hydrogen, halogen, —CX9,13, —CHX9,12, —CH2X9,1, —CN, —SOn9R9A, —SOv9NR9BR9C, —NHNR9BR9C, —ONR9BR9C, —NHC(O)NHNR9BR9C, —NHC(O)NR9BR9C, —N(O)m9, —NR9BR9C, —C(O)R9D, —C(O)OR9D, —C(O)NR9BR9C, —OR9A, —NR9BSO2R9A, —NR9BC(O)R9D, —NR9BC(O)OR9D, —NR9BOR9D, —OCX9,13, —OCHX9,12, substituted or unsubstituted alkyl, substituted or unsubstituted heteroalkyl, substituted or unsubstituted cycloalkyl, substituted or unsubstituted heterocycloalkyl, substituted or unsubstituted aryl, or substituted or unsubstituted heteroaryl. R15 is hydrogen, substituted or unsubstituted alkyl, substituted or unsubstituted heteroalkyl, substituted or unsubstituted cycloalkyl, substituted or unsubstituted heterocycloalkyl, substituted or unsubstituted aryl, or substituted or unsubstituted heteroaryl. R1A, R1B, R1C, R1D, R2A, R2B, R2C, R2D, R3AR3B, R3C, R3D, R4A, R4B, R4C, R4D, R5A, R5B, R5C, R5D, R6A, R6B, R6C, R6D, R7A, R7B, R7C, R7D, R8A, R8B, R8C, R8D, R9A, R9B, R9C and R9D are independently hydrogen, halogen, —CF3, —CCl3, —CBr3, —CI3, —OH, —NH2, —COOH, —CONH2, —NO2, —SH, —SO3H, —SO4H, —SO2NH2, —NHNH2, —ONH2, —NHC(O)NHNH2, —NHC(O)NH2, —NHSO2H, —NHC(O)H, —NHC(O)—OH, —NHOH, —OCF3, —OCCl3, —OCBr3, —OCI3, —OCHF2, —OCHCl2, —OCHBr2, —OCHI2, substituted or unsubstituted alkyl, substituted or unsubstituted heteroalkyl, substituted or unsubstituted cycloalkyl, substituted or unsubstituted heterocycloalkyl, substituted or unsubstituted aryl, or substituted or unsubstituted heteroaryl; R1B, R1C, R2B, R2C, R3B, R3C, R4B, R4C, R5B, R5C, R6B, R6C, R7B, R7C, R8B, R8C, R9B and R9C substituents bonded to the same nitrogen atom may optionally be joined to form a substituted or unsubstituted heterocycloalkyl or substituted or unsubstituted heteroaryl. X1,1, X2,1, X3,1, X4,1, X5,1, X6,1, X7,1, X8,1, and X9,1 are independently —Cl, —Br, —I or —F. The symbols n1, n2, n3, n4, n5, n6, n7, n8, and n9 are independently an integer from 0 to 4. The symbols m1, m2, m3, m4, m5, m6, m7, m8, m9, v1, v2, v3, v4, v5, v6, v7, v8, and v9 are independently 1 or 2.


In embodiments, n1 is 0. In embodiments, n1 is 1. In embodiments, n1 is 2. In embodiments, n1 is 3. In embodiments, n1 is 4. In embodiments, n2 is 0. In embodiments, n2 is 1. In embodiments, n2 is 2. In embodiments, n2 is 3. In embodiments, n2 is 4. In embodiments, n3 is 0. In embodiments, n3 is 1. In embodiments, n3 is 2. In embodiments, n3 is 3. In embodiments, n3 is 4. In embodiments, n4 is 0. In embodiments, n4 is 1. In embodiments, n4 is 2. In embodiments, n4 is 3. In embodiments, n4 is 4. In embodiments, n5 is 0. In embodiments, n5 is 1. In embodiments, n5 is 2. In embodiments, n5 is 3. In embodiments, n5 is 4. In embodiments, n6 is 0. In embodiments, n6 is 1. In embodiments, n6 is 2. In embodiments, n6 is 3. In embodiments, n6 is 4. In embodiments, n7 is 0. In embodiments, n7 is 1. In embodiments, n7 is 2. In embodiments, n7 is 3. In embodiments, n7 is 4. In embodiments, n8 is 0. In embodiments, n8 is 1. In embodiments, n8 is 2. In embodiments, n8 is 3. In embodiments, n8 is 4. In embodiments, n9 is 0. In embodiments, n9 is 1. In embodiments, n9 is 2. In embodiments, n9 is 3. In embodiments, n9 is 4. In embodiments, m1 is 1. In embodiments, m1 is 2. In embodiments, m2 is 1. In embodiments, m2 is 2. In embodiments, m3 is 1. In embodiments, m3 is 2. In embodiments, m4 is 1. In embodiments, m4 is 2. In embodiments, m5 is 1. In embodiments, m5 is 2. In embodiments, m6 is 1. In embodiments, m6 is 2. In embodiments, m7 is 1. In embodiments, m7 is 2. In embodiments, m8 is 1. In embodiments, m8 is 2. In embodiments, m9 is 1. In embodiments, m9 is 2. In embodiments, v1 is 1. In embodiments, v1 is 2. In embodiments, v2 is 1. In embodiments, v2 is 2. In embodiments, v3 is 1. In embodiments, v3 is 2. In embodiments, v4 is 1. In embodiments, v4 is 2. In embodiments, v5 is 1. In embodiments, v5 is 2. In embodiments, v6 is 1. In embodiments, v6 is 2. In embodiments, v7 is 1. In embodiments, v7 is 2. In embodiments, v8 is 1. In embodiments, v8 is 2. In embodiments, v9 is 1. In embodiments, v9 is 2.


In embodiments, when L1 is unsubstituted C1-C3 alkylene, R20 is substituted or unsubstituted aryl, R6, R7, R8 and R9 are hydrogen, R3 is —N(O)m3 and m3 is 1 or 2, then R5 is not —NR5BR5C. In embodiments, when L1 is unsubstituted C1-C3 alkylene, R20 is substituted or unsubstituted aryl, R6, R7, R8 and R9 are hydrogen, R3 is —N(O)m3 and m3 is 2, then R5 is not —NR5BR5C. In embodiments, when L1 is unsubstituted C1-C3 alkylene, R20 is substituted or unsubstituted aryl, R6, R7, R8 and R9 are hydrogen and R3 is —NO2, then R5 is not —NR5BR5C. In embodiments, when L1 is unsubstituted C1-C4 alkylene, R20 is substituted or unsubstituted aryl, R6, R7, R8 and R9 are hydrogen and R3 is —NO2, then R5 is not —NHR5C. In embodiments, when L1 is —CH2— or —CH2—CH2—, R20 is substituted or unsubstituted phenyl, R6, R7, R8 and R9 are hydrogen and when R3 is —NO2, then R5 is not —NR5BR5C. In embodiments, when L1 is —CH2— or —CH2—CH2—, R20 is substituted or unsubstituted phenyl, R6, R7, R8 and R9 are hydrogen and R3 is —NO2, then R5 is not —NHR5C. In embodiments, when L1 is —CH2— or —CH2—CH2—, R20 is substituted or unsubstituted phenyl, R6, R7, R8 and R9 are hydrogen and R3 is —NO2, then R5 is not —NH2. In embodiments, when L1 is —CH2—, R20 is substituted or unsubstituted phenyl and R6, R7, R8 and R9 are hydrogen, then R3 is not —NO2 and R5 is not —NR5BR5C. In embodiments, when L1 is —CH2—, R20 is substituted or unsubstituted phenyl and R6, R7, R8 and R9 are hydrogen, then R3 is not —NO2 and R5 is not —NH2. In embodiments, when R3 is —NO2, then R5 is not —NH2. In embodiments, when R3 is —NO2 and R5 is —NH2, then at least one of R6, R7, R8 and R9 is not hydrogen. In embodiments, when R3 is —NO2 and R5 is —NH2, R6, R7, R8 and R9 are not hydrogen.


In embodiments, when L1 is unsubstituted C1-C3 alkylene, R20 is substituted or unsubstituted aryl, R6, R7, R8 and R9 are hydrogen, R1 is —N(O)m1 and m1 is 1 or 2, then R4 is not —NR4BR4C. In embodiments, when L1 is unsubstituted C1-C3 alkylene, R20 is substituted or unsubstituted aryl, R6, R7, R8 and R9 are hydrogen, R1 is —N(O)m1 and m1 is 2, then R4 is not —NR4BR4C. In embodiments, when L1 is unsubstituted C1-C3 alkylene, R20 is substituted or unsubstituted aryl, R6, R7, R8 and R9 are hydrogen and R1 is —NO2, then R4 is not —NR4BR4C. In embodiments, when L1 is unsubstituted C1-C4 alkylene, R20 is substituted or unsubstituted aryl, R6, R7, R8 and R9 are hydrogen and R1 is —NO2, then R4 is not —NHR4C. In embodiments, when L1 is —CH2— or —CH2CH2—, R20 is substituted or unsubstituted phenyl, R6, R7, R8 and R9 are hydrogen and when R1 is —NO2, then R4 is not —NR4BR4C. In embodiments, when L1 is —CH2— or —CH2CH2—, R20 is substituted or unsubstituted phenyl, R6, R7, R8 and R9 are hydrogen and R1 is —NO2, then R4 is not —NHR4C. In embodiments, when L1 is —CH2— or —CH2CH2—, R20 is substituted or unsubstituted phenyl, R6, R7, R8 and R9 are hydrogen and R1 is —NO2, then R4 is not —NH2. In embodiments, when L1 is —CH2—, R20 is substituted or unsubstituted phenyl and R6, R7, R8 and R9 are hydrogen, then R1 is not NO2 and R4 is not —NR4BR4C. In embodiments, when L1 is —CH2—, R20 is substituted or unsubstituted phenyl and R6, R7, R8 and R9 are hydrogen, then R1 is not —NO2 and R4 is not —NH2. In embodiments, when R1 is —NO2, then R4 is not —NH2.


In embodiments, when -L1-R20 is unsubstituted C2-C4 alkyl, then at least one of R1, R2, R3, R4 and R5 is NO2. In embodiments, when -L1-R20 is unsubstituted C2-C4 alkyl, then at least one of R1, R2, R3, R4 and R5 is NO2. In embodiments, when -L1-R20 is unsubstituted C2-C4 alkyl, then at least one of R1, R3, R4 and R5 is NO2. In embodiments, when L1 is —CH2— and R20 is methyl, ethyl, or ethenyl, then at least one of R1, R3, R4 and R5 is NO2. In embodiments, when L1 is —CH2— and R20 is methyl, ethyl, or ethenyl, then at least one of R2 or R3 is NO2. In embodiments, when L1 is —CH2— and R20 is methyl, ethyl, or ethenyl, then R3 is NO2. In embodiments, when Li is —CH2— and R20 is methyl, then R3 is NO2. In embodiments, when L1 is —CH2— and R20 is ethyl, then R3 is NO2. In embodiments, when L1 is —CH2— and R20 is ethenyl, then R3 is NO2.


In embodiments, when L1 is a bond or unsubstituted C1-C3 alkylene and R20 is substituted or unsubstituted (e.g. 5-6 membered) heterocycloalkyl or substituted or unsubstituted (e.g. 5-6 membered) heteroaryl, then R1, R2, R3, R4 and R5 are not hydrogen. In embodiments, when L1 is a bond or —CH2— and R20 is substituted or unsubstituted (e.g. 5-6 membered) heterocycloalkyl or substituted or unsubstituted (e.g. 5-6 membered) heteroaryl, then at least one of R1, R2, R3, R4 and R5 is NO2. In embodiments, when L1 is —CH2— and R20 is substituted or unsubstituted (e.g. 5-6 membered) heterocycloalkyl or substituted or unsubstituted (e.g. 5-6 membered) heteroaryl, then at least one of R1, R2, R3, R4 and R5 is NO2. In embodiments, when L1 is —CH2— and R20 is substituted or unsubstituted (e.g. 5-6 membered) heterocycloalkyl, then at least one of R1, R2, R3, R4 and R5 is NO2. In embodiments, when L1 is —CH2— and R20 is substituted or unsubstituted (e.g. 5-6 membered) heteroaryl, then at least one of R1, R2, R3, R4 and R5 is NO2. In embodiments, when L1 is —CH2— and R20 is substituted or unsubstituted (e.g. 5-6 membered) heterocycloalkyl, then at least one of R1, R3, R4 and R5 is NO2. In embodiments, when L1 is —CH2— and R20 is substituted or unsubstituted (e.g. 5-6 membered) heteroaryl, then at least one of R1, R3, R4 and R5 is NO2. In embodiments, when L1 is —CH2— and R20 is substituted or unsubstituted (e.g. 5-6 membered) heterocycloalkyl or substituted or unsubstituted (e.g. 5-6 membered) heteroaryl, then R1 or R3 is NO2. In embodiments, when L1 is —CH2— and R20 is substituted or unsubstituted (e.g. 5-6 membered) heterocycloalkyl or substituted or unsubstituted (e.g. 5-6 membered) heteroaryl, then R1 is NO2. In embodiments, when L1 is —CH2— and R20 is substituted or unsubstituted (e.g. 5-6 membered) heterocycloalkyl or substituted or unsubstituted (e.g. 5-6 membered) heteroaryl, then R3 is NO2.


In embodiments, when L1 is —CH2— and R20 is substituted or unsubstituted pyridyl, furanyl, or thiophenyl, then R1, R2, R3, R4 and R5 are not hydrogen. In embodiments, when L1 is —CH2— and R20 is substituted or unsubstituted pyridyl, furanyl, or thiophenyl, at least one of R1, R2, R3, R4 and R5 is NO2. In embodiments, when L1 is —CH2— and R20 is unsubstituted pyridyl, furanyl, or thiophenyl, then at least one of R1, R2, R3, R4 and R5 is NO2. In embodiments, when L1 is —CH2— and R20 is unsubstituted pyridyl, furanyl, or thiophenyl, at least one of R1, R3, R4 and R5 is NO2. In embodiments, when L1 is —CH2— and R20 is unsubstituted pyridyl, furanyl, or thiophenyl, R1 or R3 is NO2. In embodiments, when L1 is —CH2— and R20 is unsubstituted pyridyl, furanyl, or thiophenyl, R1 is NO2. In embodiments, when L1 is —CH2— and R20 is unsubstituted pyridyl, furanyl, or thiophenyl, R3 is NO2.


In embodiments, when L1 is —CH2— and R20 is substituted or unsubstituted C6-C8 aryl, then R1, R2, R3, R4 and R5 are not hydrogen. In embodiments, when L1 is —CH2— and R20 is substituted or unsubstituted C6-C8 aryl, then at least one of R1, R2, R3, R4 and R5 is halogen, NO2, NH2, COOCH3, COOH, CN or substituted C1-C3 alkyl or R2 and R3 is joined to form, together with the atoms to which they are attached, substituted or unsubstituted heteroaryl. In embodiments, when L1 is —CH2— and R20 is substituted or unsubstituted C6-C8 aryl, then at least one of R1, R2, R3, R4 and R5 is halogen, NO2, NH2, COOCH3, COOH, CN or substituted C1-C3 alkyl. In embodiments, when L1 is —CH2— and R20 is substituted or unsubstituted C6-C8 aryl, then R2 and R3 is joined to form, together with the atoms to which they are attached, substituted or unsubstituted heteroaryl. In embodiments, when L1 is —CH2— and R20 is substituted or unsubstituted C6-C8 aryl, then at least one of R1, R2, R3, R4 and R5 is halogen, NO2, NH2, COOCH3, COOH, CN or substituted C1-C3 alkyl. In embodiments, when L1 is —CH2— and R20 is substituted or unsubstituted phenyl, then at least one of R1, R2, R3, R4 and R5 is halogen, NO2, NH2, COOCH3, COOH, CN or substituted C1-C3 alkyl. In embodiments, when L1 is —CH2— and R20 is unsubstituted phenyl, then at least one of R1, R2, R3, R4 and R5 is halogen, NO2, NH2, COOCH3, COOH, CN or substituted C1-C3 alkyl. In embodiments, when L1 is —CH2— and R20 is unsubstituted phenyl, then at least one of R1, R2, R3, R4 and R5 is halogen, NO2, NH2, COOCH3, COOH, CN or CF3. In embodiments, when L1 is —CH2— and R20 is substituted or unsubstituted C6-C8 aryl, then R2 and R3 is joined to form, together with the atoms to which they are attached, substituted or unsubstituted heteroaryl. In embodiments, when L1 is —CH2— and R20 is substituted or unsubstituted phenyl, then R2 and R3 is joined to form, together with the atoms to which they are attached, substituted or unsubstituted heteroaryl. In embodiments, when L1 is —CH2— and R20 is unsubstituted phenyl, then R2 and R3 is joined to form, together with the atoms to which they are attached, substituted or unsubstituted heteroaryl. In embodiments, when L1 is —CH2— and R20 is unsubstituted phenyl, then R2 and R3 is joined to form, together with the atoms to which they are attached,




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In embodiments, R2-R3 is ═N—O—N═.


In embodiments, L1 is —O—, —S—, —N(R15)—, —C(O)N(R15)—, —C(O)—, substituted or unsubstituted alkylene or substituted or unsubstituted heteroalkylene. In embodiments, L1 is —O—, —S—, —NH—, —C(O)NH—, —C(O)—, or substituted or unsubstituted C1-C3 alkylene. In embodiments, L1 is —O—, —S—, —NH—, —C(O)NH—, —C(O)—, or unsubstituted C1-C3 alkylene. In embodiments, L1 is substituted or unsubstituted C1-C3 alkylene or substituted or unsubstituted 2 to 6 membered heteroalkylene. In embodiments, L1 is substituted or unsubstituted C1-C3 alkylene. In embodiments, L1 is unsubstituted C1-C3 alkylene. In embodiments, L1 is —CH2— or —CH2—CH2—. In embodiments, L1 is —O—, —S—, —N(R15)—, —C(O)N(R15)—, —C(O)—, or —CH2—.


In embodiments, R20 is substituted or unsubstituted substituted or unsubstituted aryl or substituted or unsubstituted heteroaryl. In embodiments, R20 is substituted or unsubstituted aryl. In embodiments, R20 is substituted or unsubstituted heteroaryl. In embodiments, R20 is substituted or unsubstituted phenyl. In embodiments, R20 is




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Further provided herein are compounds having the formula (IA):




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or a pharmaceutically acceptable salt thereof. The symbols L1, R1, R2, R3, R4, R5, R6, R7, R8, R9 and R15 are as described herein. The symbols n1, n2, n3, n4, n5, n6, n7, n8, and n9 are independently an integer from 0 to 4; and the symbols m1, m2, m3, m4, m5, m6, m7, m8, m9, v1, v2, v3, v4, v5, v6, v7, v8, and v9 are independently 1 or 2 in formula (IA) are as defined above and herein. In embodiments, L1 is —O—, —S—, —N(R15)—, —C(O)N(R15)—, —C(O)—, substituted or unsubstituted (e.g. C1-C3) alkylene or substituted or unsubstituted (e.g. 2 to 6 membered or 2 to 4 membered) heteroalkylene. In embodiments, L1 is —O—, —S—, —N(R15)—, —C(O)N(R15)—, —C(O)—, unsubstituted C1-C3 alkylene. In embodiments, L1 is —O—, —S—, —N(R15)—, —C(O)N(R15)—, —C(O)—, or —CH2—. R10 is hydrogen, halogen, —CX10,13, —CHX10,12, —CH2X10,1, —CN, —SOn10R10A, —SOv10NR10BR10C, —NHNR10BR10C, —ONR10BR10C, —NHC(O)NHNR10BR10C, —NHC(O)NR10BR10C, —N(O)m10, —NR10BR10C, —C(O)R10D, —C(O)OR10D, —C(O)NR10BR10C, —OR10A, —NR10BSO2R10A, —NR10BC(O)R10D, —NR10BC(O)OR10D, —NR10BOR10D, —OCX10,13, —OCHX10,12, substituted or unsubstituted alkyl, substituted or unsubstituted heteroalkyl, substituted or unsubstituted cycloalkyl, substituted or unsubstituted heterocycloalkyl, substituted or unsubstituted aryl, or substituted or unsubstituted heteroaryl. In embodiments, R10 is hydrogen, halogen, —CX10,13, —CHX10,12, —CH2X10,1, —CN, —SOn10R10A, —SOv10NR10BR10C, —NHNR10BR10C, —ONR10BR10C, —NHC(O)NHNR10BR10C, —NHC(O)NR10BR10C, —N(O)m10, —C(O)R10D, —C(O)OR10D, —C(O)NR10BR10C, —OR10A, —NR10BSO2R10A, —NR10BC(O)R10D, —NR10BC(O)OR10D, —NR10BOR10D, —OCX10,13, —OCHX10,12, substituted or unsubstituted alkyl, substituted or unsubstituted heteroalkyl, substituted or unsubstituted cycloalkyl, or substituted or unsubstituted aryl. R11 is hydrogen, halogen, —CX11,13, —CHX11,12, —CH2X11,1, —CN, —SOn11R11A, —SOv11NR11BR11C, —NHNR11BR11C, —ONR11BR11C, —NHC(O)NHNR11BR11C, —NHC(O)NR11BR11C, —N(O)m11, —NR11BR11C, —C(O)R11D, —C(O)OR11D, —C(O)NR11BR11C, —OR11A, —NR11BSO2R11A, —NR11BC(O)R11D, —NR11BC(O)OR11D, —NR11BOR11D, —OCX11,13, —OCHX11,12, substituted or unsubstituted alkyl, substituted or unsubstituted heteroalkyl, substituted or unsubstituted cycloalkyl, substituted or unsubstituted heterocycloalkyl, substituted or unsubstituted aryl, or substituted or unsubstituted heteroaryl. In embodiments, R11 is hydrogen, halogen, —CX11,13, —CHX11,12, —CH2X11,1, —CN, —SOn11R11A, —SOv11NR11BR11C, —NHNR11BR11C, —ONR11BR11C, —NHC(O)NHNR11BR11C, —NHC(O)NR11BR11C, —N(O)m11, —C(O)R11D, —C(O)OR11D, —C(O)NR11BR11C, —OR11A, —NR11BSO2R11A, —NR11BC(O)R11D, —NR11BC(O)OR11D, —NR11BOR11D, —OCX11,13, —OCHX11,12, substituted or unsubstituted alkyl, substituted or unsubstituted heteroalkyl, substituted or unsubstituted cycloalkyl or substituted or unsubstituted aryl. R12 is hydrogen, halogen, —CX12,13, —CHX12,12, —CH2X12,1, —CN, —SOn12R12A, —SOv12NR12BR12C, —NHNR12BR12C, —ONR12BR12C, —NHC(O)NHNR12BR12C, —NHC(O)NR12BR12C, —N(O)m12, —NR12BR12C, —C(O)R12D, —C(O)OR12D, —C(O)NR12BR12C, —OR12A, —NR12BSO2R12A, —NR12BC(O)R12D, —NR12BC(O)OR12D, —NR12BOR12D, —OCX12,13, —OCHX12,12, substituted or unsubstituted alkyl, substituted or unsubstituted heteroalkyl, substituted or unsubstituted cycloalkyl, substituted or unsubstituted heterocycloalkyl, substituted or unsubstituted aryl, or substituted or unsubstituted heteroaryl. In embodiments, R12 is hydrogen, halogen, —CX12,13, —CHX12,12, —CH2X12,1, —CN, —SOn12R12A, —SOv12NR12BR12C, —NHNR12BR12C, —ONR12BR12C, —NHC(O)NHNR12BR12C, —NHC(O)NR12BR12C, —N(O)m12, —C(O)R12D, —C(O)OR12D, —C(O)NR12BR12C, —OR12A, —NR12BSO2R12A, —NR12BC(O)R12D, —NR12BC(O)OR12D, —NR12BOR12D, —OCX12,13, —OCHX12,12, substituted or unsubstituted alkyl, substituted or unsubstituted heteroalkyl, substituted or unsubstituted cycloalkyl, or substituted or unsubstituted aryl. R13 is hydrogen, halogen, —CX13,13, —CHX13,12, —CH2X13,1, —CN, —SOn13R13A, —SOv13NR13BR13C, —NHNR13BR13C, —ONR13BR13C, —NHC(O)NHNR13BR13C, —NHC(O)NR13BR13C, —N(O)m13, —NR13BR13C, —C(O)R13D, —C(O)OR13D, —C(O)NR13BR13C, —OR13A, —NR13BSO2R13A, —NR13BC(O)R13D, —NR13BC(O)OR13D, —NR13BOR13D, —OCX13,13, —OCHX13,12, substituted or unsubstituted alkyl, substituted or unsubstituted heteroalkyl, substituted or unsubstituted cycloalkyl, substituted or unsubstituted heterocycloalkyl, substituted or unsubstituted aryl, or substituted or unsubstituted heteroaryl. In embodiments, R13 is hydrogen, halogen, —CX13,13, —CHX13,12, —CH2X13,1, —CN, —SOn13R13A, —SOv13NR13BR13C, —NHNR13BR13C, —ONR13BR13C, —NHC(O)NHNR13BR13C, —NHC(O)NR13BR13C, —N(O)m13, —C(O)R13D, —C(O)OR13D, —C(O)NR13BR13C, —OR13A, —NR13BSO2R13A, —NR13BC(O)R13D, —NR13BC(O)OR13D, —NR13BOR13D, —OCX13,13, —OCHX13,12, substituted or unsubstituted alkyl, substituted or unsubstituted heteroalkyl, substituted or unsubstituted cycloalkyl or substituted or unsubstituted aryl. R14 is hydrogen, halogen, —CX14,13, —CHX14,12, —CH2X14,1, —CN, —SOn14R14A, —SOv14NR14BR14C, —NHNR14BR14C, —ONR14BR14C, —NHC(O)NHNR14BR14C, —NHC(O)NR14BR14C, —N(O)m14, —NR14BR14C, —C(O)R14D, —C(O)OR14D, —C(O)NR14BR14C, —OR14A, —NR14BSO2R14A, —NR14BC(O)R14D, —NR14BC(O)OR14D, —NR14BOR14D, —OCX14,13, —OCHX14,12, substituted or unsubstituted alkyl, substituted or unsubstituted heteroalkyl, substituted or unsubstituted cycloalkyl, substituted or unsubstituted heterocycloalkyl, substituted or unsubstituted aryl, or substituted or unsubstituted heteroaryl. In embodiments, R14 is hydrogen, halogen, —CX14,13, —CHX14,12, —CH2X14,1, —CN, —SOn14R14A, —SOv14NR14BR14C, —NHNR14BR14C, —ONR14BR14C, —NHC(O)NHNR14BR14C, —NHC(O)NR14BR14C, —N(O)m14, —C(O)R14D, —C(O)OR14D, —C(O)NR14BR14C, —OR14A, —NR14BSO2R14A, —NR14BC(O)R14D, —NR14BC(O)OR14D, —NR14BOR14D, —OCX14,13, —OCHX14,12, substituted or unsubstituted alkyl, substituted or unsubstituted heteroalkyl, substituted or unsubstituted cycloalkyl, or substituted or unsubstituted aryl. R10A, R10B, R10C, R10D, R11A, R11B, R11C, R11D, R12A, R12B, R12C, R12D, R13A, R13B, R13C, R13D, R14A, R14B, R14C and R14D are independently hydrogen, halogen, —CF3, —CCl3, —CBr3, —CI3, —OH, —NH2, —COOH, —CONH2, —NO2, —SH, —SO3H, —SO4H, —SO2NH2, —NHNH2, —ONH2, —NHC(O)NHNH2, —NHC(O)NH2, —NHSO2H, —NHC(O)H, —NHC(O)—OH, —NHOH, —OCF3, —OCCl3, —OCBr3, —OCI3, —OCHF2, —OCHCl2, —OCHBr2, —OCHI2, substituted or unsubstituted alkyl, substituted or unsubstituted heteroalkyl, substituted or unsubstituted cycloalkyl, substituted or unsubstituted heterocycloalkyl, substituted or unsubstituted aryl, or substituted or unsubstituted heteroaryl; R10B, R10C, R11B, R11C, R12B, R12C, R13B, R13C, R14B and R14C substituents bonded to the same nitrogen atom may optionally be joined to form a substituted or unsubstituted heterocycloalkyl or substituted or unsubstituted heteroaryl. X10,1, X11,1, X12,1, X13,1 and X14,1 are independently —Cl, —Br, —I or —F. The symbol n10, n11, n12, n13 and n14 is an integer from 0 to 4. The symbols m10, m11, m12, m13, m14, v10, v11, v12, v13 and v14 are independently 1 or 2.


In embodiments, L1 is —O—, —S—, —N(R15)— (e.g —NH—), —C(O)N(R15)—, —C(O)—, substituted or unsubstituted alkylene or substituted or unsubstituted heteroalkylene. In embodiments, L1 is substituted or unsubstituted alkylene. In embodiments, L1 is unsubstituted alkylene. In embodiments, L1 is substituted or unsubstituted C1-C10 alkylene. In embodiments, L1 is substituted or unsubstituted C1-C5 alkylene. In embodiments, L1 is substituted or unsubstituted C1-C3 alkylene. In embodiments, L1 is unsubstituted C1-C10 alkylene. In embodiments, L1 is unsubstituted C1-C5 alkylene. In embodiments, L1 is unsubstituted C1-C3 alkylene. In embodiments, L1 is —CH2—.


In embodiments, R6, R7, R8 and R9 are independently hydrogen or substituted or unsubstituted alkyl. In embodiments, R6, R7, R8 and R9 are independently hydrogen or unsubstituted alkyl. In embodiments, R6, R7, R8 and R9 are independently hydrogen or substituted or unsubstituted C1-C10 (e.g. C1-C5) alkyl. In embodiments, R6, R7, R8 and R9 are independently hydrogen or unsubstituted C1-C10 (e.g. C1-C5) alkyl. In embodiments, R6, R7, R8 and R9 are independently hydrogen.


In embodiments, at least two of R1, R2, R3, R4, R5 are independently hydrogen. In embodiments, R1 is hydrogen, halogen —NO2, —NR1BR1C, NR1BC(O)R1D or substituted or unsubstituted alkyl. In embodiments, R2 is hydrogen, halogen —NO2, —NR2BR2C, NR2BC(O)R2D or substituted or unsubstituted alkyl. In embodiments, R3 is hydrogen, halogen —NO2, —NR3BR3C, NR3BC(O)R3D or substituted or unsubstituted alkyl. In embodiments, R4 is hydrogen, halogen —NO2, —NR4BR4C, NR4BC(O)R4D or substituted or unsubstituted alkyl. In embodiments, R5 is hydrogen, halogen —NO2, —NR5BR5C, NR5BC(O)R5D or substituted or unsubstituted alkyl. In embodiments, R15 is independently hydrogen or substituted or unsubstituted alkyl. In embodiments, R10, R11, R12, R13 and R14 are independently hydrogen. In embodiments, R1, R2 and R4 are independently hydrogen. In embodiments, R3 is —NO2. In embodiments, R5 is —NH2. In embodiments, R1 is —NO2. In embodiments, R4 is —NH2.


In embodiments, when L1 is C1-C4 alkylene, R6, R7, R8 and R9 are hydrogen and R3 is NO2, then R5 is not —NR5BR5C. In embodiments, when L1 is C1-C4 alkylene, R6, R7, R8 and R9 are hydrogen and R3 is NO2, then R5 is not —NHR5C. In embodiments, when L1 is —CH2— or —CH2CH2—, R6, R7, R8 and R9 are hydrogen and R3 is NO2, then R5 is not —NR5BR5C. In embodiments, when L1 is —CH2— or —CH2CH2—, R6, R7, R8 and R9 are hydrogen and R3 is NO2, then R5 is not —NHR5C. In embodiments, when L1 is —CH2— or —CH2CH2—, R6, R7, R8 and R9 are hydrogen and R3 is NO2, then R5 is not —NH2. In embodiments, when L1 is —CH2—, R6, R7, R8 and R9 are hydrogen, R3 is not NO2 and R5 is not —NR5BR5C. In embodiments, when L1 is —CH2—, R6, R7, R8 and R9 are hydrogen, R3 is not NO2 and R5 is not —NH2. In embodiments, when R3 is NO2, then R5 is not —NH2.


In embodiments, when L1 is C1-C4 alkylene, R6, R7, R8 and R9 are hydrogen and R1 is NO2, then R4 is not —NR4BR4C. In embodiments, when L1 is C1-C4 alkylene, R6, R7, R8 and R9 are hydrogen and R1 is NO2, then R4 is not —NHR4C. In embodiments, when L1 is —CH2— or —CH2CH2—, R20 is substituted or unsubstituted phenyl, R6, R7, R8 and R9 are hydrogen and R1 is NO2, then R4 is not —NR5BR5C. In embodiments, when L1 is —CH2— or —CH2CH2—, R6, R7, R8 and R9 are hydrogen and R1 is NO2, then R4 is not —NHR4C. In embodiments, when L1 is —CH2— or —CH2CH2—, R6, R7, R8 and R9 are hydrogen and R1 is NO2, then R4 is not —NH2. In embodiments, when L1 is —CH2—, R6, R7, R8 and R9 are hydrogen, R1 is not NO2 and R4 is not —NR5BR5C. In embodiments, when —CH2—, R20 is substituted or unsubstituted phenyl, R6, R7, R8 and R9 are hydrogen, R1 is not NO2 and R4 is not —NH2. In embodiments, when R1 is NO2, then R4 is not —NH2.


In embodiments, L1 is substituted or unsubstituted C1-C5 alkylene. In embodiments, L1 is substituted or unsubstituted C1-C3 alkylene. In embodiments, L1 is unsubstituted C1-C5 alkylene. In embodiments, L1 is unsubstituted C1-C3 alkylene. In embodiments, L1 is —CH2— or —CH2CH2—. In embodiments, L1 is —CH2—. In embodiments, the compound has Formula IB:




embedded image


In formula IB, R1, R2, R3, R4, R5, R6, R7, R8, R9, R10, R11, R12, R13, and R14 are as described herein.


In embodiments, R1 is independently hydrogen, halogen, —CX1,13, —CHX1,12, —CH2X1,1, —CN, —SOn1R1A, —SOv1NR1BR1C, —NHNR1BR1C, —ONR1BR1C, —NHC(O)NHNR1BR1C, —NHC(O)NR1BR1C, —N(O)m1, —NR1BR1C, —C(O)R1D, —C(O)OR1D, —C(O)NR1BR1C, —OR1A, —NR1BSO2R1A, —NR1BC(O)R1D, —NR1BC(O)OR1D, —NR1BOR1D, —OCX1,13, —OCHX1,12 (e.g. hydrogen, halogen, —CF3, —CCl3, —CBr3, —CI3, —CN, —OH, —NH2, —COOH, —CONH2, —NO2, —SH, —SO3H, —SO4H, —SO2NH2, —NHNH2, —ONH2, —NHC(O)NHNH2, —NHC(O)NH2, —NHSO2H, —NHC(O)H, —NHC(O)OH, —NHOH, —OCF3, —OCCl3, —OCBr3, —OCI3, —OCHF2, —OCHCl2, —OCHBr2, —OCHI2), R1E-substituted or unsubstituted alkyl, R1E-substituted or unsubstituted heteroalkyl, R1E-substituted or unsubstituted cycloalkyl, R1E-substituted or unsubstituted heterocycloalkyl, R1E-substituted or unsubstituted aryl, or R1E-substituted or unsubstituted heteroaryl. In embodiments, R1 is independently hydrogen, halogen, —CX1,13, —CHX1,12, —CH2X1,1, —CN, —SOn1R1A, —SOv1NR1BR1C, —NHNR1BR1C, —ONR1BR1C, —NHC(O)NHNR1BR1C, —NHC(O)NR1BR1C, —N(O)m1, —NR1BR1C, —C(O)R1D, —C(O)OR1D, —C(O)NR1BR1C, —OR1A, —NR1BSO2R1A, —NR1BC(O)R1D, —NR1BC(O)OR1D, —NR1BOR1D, —OCX1,13, —OCHX1,12 (e.g. hydrogen, halogen, —CF3, —CCl3, —CBr3, —CI3, —CN, —OH, —NH2, —COOH, —CONH2, —NO2, —SH, —SO3H, —SO4H, —SO2NH2, —NHNH2, —ONH2, —NHC(O)NHNH2, —NHC(O)NH2, —NHSO2H, —NHC(O)H, —NHC(O)OH, —NHOH, —OCF3, —OCCl3, —OCBr3, —OCI3, —OCHF2, —OCHCl2, —OCHBr2, —OCHI2), R1E-substituted or unsubstituted C1-C6 alkyl, R1E-substituted or unsubstituted 2 to 6 membered heteroalkyl, R1E-substituted or unsubstituted C3-C6 cycloalkyl, R1E-substituted or unsubstituted 3 to 6 membered heterocycloalkyl, R1E-substituted or unsubstituted phenyl, or R1E-substituted or unsubstituted 5 to 6 membered heteroaryl.


R1E is independently oxo, halogen, —CF3, —CCl3, —CBr3, —CI3, —CN, —OH, —NH2, —COOH, —CONH2, —NO2, —SH, —SO3H, —SO4H, —SO2NH2, —NHNH2, —ONH2, —NHC(O)NHNH2, —NHC(O)NH2, —NHSO2H, —NHC(O)H, —NHC(O)OH, —NHOH, —OCF3, —OCCl3, —OCBr3, —OCI3, —OCHF2, —OCHCl2, —OCHBr2, —OCHI2, R1F-substituted or unsubstituted alkyl, R1F-substituted or unsubstituted heteroalkyl, R1F-substituted or unsubstituted cycloalkyl, R1F-substituted or unsubstituted heterocycloalkyl, R1F-substituted or unsubstituted aryl, or R1F-substituted or unsubstituted heteroaryl. In embodiments, R1E is independently oxo, halogen, —CF3, —CCl3, —CBr3, —CI3, —CN, —OH, —NH2, —COOH, —CONH2, —NH2, —SH, —SO3H, —SO4H, —SO2NH2, —NHNH2, —ONH2, —NHC(O)NHNH2, —NHC(O)NH2, —NHSO2H, —NHC(O)H, —NHC(O)OH, —NHOH, —OCF3, —OCCl3, —OCBr3, —OCI3, —OCHF2, —OCHCl2, —OCHBr2, —OCHI2, R1F-substituted or unsubstituted C1-C6 alkyl, R1F-substituted or unsubstituted 2 to 6 membered heteroalkyl, R1F-substituted or unsubstituted C3-C6 cycloalkyl, R1F-substituted or unsubstituted 3 to 6 membered heterocycloalkyl, R1F-substituted or unsubstituted phenyl, or R1F-substituted or unsubstituted 5 to 6 membered heteroaryl.


In embodiments, R2 is independently hydrogen, halogen, —CX2,13, —CHX2,12, —CH2X2,1, —CN, —SOn2R2A, —SOv2NR2BR2C, —NHNR2BR2C, —ONR2BR2C, —NHC(O)NHNR2BR2C, —NHC(O)NR2BR2C, —N(O)m2, —NR2BR2C, —C(O)R2D, —C(O)OR2D, —C(O)NR2BR2C, —OR2A, —NR2BSO2R2A, —NR2BC(O)R2D, —NR2BC(O)OR2D, —NR2BOR2D, —OCX2,13, —OCHX2,12 (e.g. hydrogen, halogen, —CF3, —CCl3, —CBr3, —CI3, —CN, —OH, —NH2, —COOH, —CONH2, —NO2, —SH, —SO3H, —SO4H, —SO2NH2, —NHNH2, —ONH2, —NHC(O)NHNH2, —NHC(O)NH2, —NHSO2H, —NHC(O)H, —NHC(O)OH, —NHOH, —OCF3, —OCCl3, —OCBr3, —OCI3, —OCHF2, —OCHCl2, —OCHBr2, —OCHI2), R2E-substituted or unsubstituted alkyl, R2E-substituted or unsubstituted heteroalkyl, R2E-substituted or unsubstituted cycloalkyl, R2E-substituted or unsubstituted heterocycloalkyl, R2E-substituted or unsubstituted aryl, or R2E-substituted or unsubstituted heteroaryl. In embodiments, R2 is independently hydrogen, halogen, —CX2,13, —CHX2,12, —CH2X2,1, —CN, —SOn2R2A, —SOv2NR2BR2C, —NHNR2BR2C, —ONR2BR2C, —NHC(O)NHNR2BR2C, —NHC(O)NR2BR2C, —N(O)m2, —NR2BR2C, —C(O)R2D, —C(O)OR2D, —C(O)NR2BR2C, —OR2A, —NR2BSO2R2A, —NR2BC(O)R2D, —NR2BC(O)OR2D, —NR2BOR2D, —OCX2,13, —OCHX2,12 (e.g. hydrogen, halogen, —CF3, —CCl3, —CBr3, —CI3, —CN, —OH, —NH2, —COOH, —CONH2, —NO2, —SH, —SO3H, —SO4H, —SO2NH2, —NHNH2, —ONH2, —NHC(O)NHNH2, —NHC(O)NH2, —NHSO2H, —NHC(O)H, —NHC(O)OH, —NHOH, —OCF3, —OCCl3, —OCBr3, —OCI3, —OCHF2, —OCHCl2, —OCHBr2, —OCHI2), R2E-substituted or unsubstituted C1-C6 alkyl, R2E-substituted or unsubstituted 2 to 6 membered heteroalkyl, R2E-substituted or unsubstituted C3-C6 cycloalkyl, R2E-substituted or unsubstituted 3 to 6 membered heterocycloalkyl, R2E-substituted or unsubstituted phenyl, or R2E-substituted or unsubstituted 5 to 6 membered heteroaryl. In embodiments, R2 is haloalkyl. In embodiments, R2 is C1-C6 haloalkyl.


R2E is independently oxo, halogen, —CF3, —CCl3, —CBr3, —CI3, —CN, —OH, —NH2, —COOH, —CONH2, —NO2, —SH, —SO3H, —SO4H, —SO2NH2, —NHNH2, —ONH2, —NHC(O)NHNH2, —NHC(O)NH2, —NHSO2H, —NHC(O)H, —NHC(O)OH, —NHOH, —OCF3, —OCCl3, —OCBr3, —OCI3, —OCHF2, —OCHCl2, —OCHBr2, —OCHI2, R2F-substituted or unsubstituted alkyl, R2F-substituted or unsubstituted heteroalkyl, R2F-substituted or unsubstituted cycloalkyl, R2F-substituted or unsubstituted heterocycloalkyl, R2F-substituted or unsubstituted aryl, or R2F-substituted or unsubstituted heteroaryl. In embodiments, R2E is independently oxo, halogen, —CF3, —CCl3, —CBr3, —CI3, —CN, —OH, —NH2, —COOH, —CONH2, —NO2, —SH, —SO3H, —SO4H, —SO2NH2, —NHNH2, —ONH2, —NHC(O)NHNH2, —NHC(O)NH2, —NHSO2H, —NHC(O)H, —NHC(O)OH, —NHOH, —OCF3, —OCCl3, —OCBr3, —OCI3, —OCHF2, —OCHCl2, —OCHBr2, —OCHI2, R2F-substituted or unsubstituted C1-C6 alkyl, R2F-substituted or unsubstituted 2 to 6 membered heteroalkyl, R2F-substituted or unsubstituted C3-C6 cycloalkyl, R2F-substituted or unsubstituted 3 to 6 membered heterocycloalkyl, R2F-substituted or unsubstituted phenyl, or R2F-substituted or unsubstituted 5 to 6 membered heteroaryl.


In embodiments, R3 is independently hydrogen, halogen, —CX3,13, —CHX3,12, —CH2X3,1, —CN, —SOn3R3A, —SOv3NR3BR3C, —NHNR3BR3C, —ONR3BR3C, —NHC(O)NHNR3BR3C, —NHC(O)NR3BR3C, —N(O)m3, —NR3BR3C, —C(O)R3D, —C(O)OR3D, —C(O)NR3BR3C, —OR3A, —NR3BSO2R3A, —NR3BC(O)R3D, —NR3BC(O)OR3D, —NR3BOR3D, —OCX3,13, —OCHX3,12 (e.g. hydrogen, halogen, —CF3, —CCl3, —CBr3, —CI3, —CN, —OH, —NH2, —COOH, —CONH2, —NO2, —SH, —SO3H, —SO4H, —SO2NH2, —NHNH2, —ONH2, —NHC(O)NHNH2, —NHC(O)NH2, —NHSO2H, —NHC(O)H, —NHC(O)OH, —NHOH, —OCF3, —OCCl3, —OCBr3, —OCI3, —OCHF2, —OCHCl2, —OCHBr2, —OCHI2), R3E-substituted or unsubstituted alkyl, R3E-substituted or unsubstituted heteroalkyl, R3E-substituted or unsubstituted cycloalkyl, R3E-substituted or unsubstituted heterocycloalkyl, R3E-substituted or unsubstituted aryl, or R3E-substituted or unsubstituted heteroaryl. In embodiments, R3 is independently hydrogen, halogen, —CX3,13, —CHX3,12, —CH2X3,1, —CN, —SOn3R3A, —SOv3NR3BR3C, —NHNR3BR3C, —ONR3BR3C, —NHC(O)NHNR3BR3C, —NHC(O)NR3BR3C, —N(O)m3, —NR3BR3C, —C(O)R3D, —C(O)OR3D, —C(O)NR3BR3C, —OR3A, —NR3BSO2R3A, —NR3BC(O)R3D, —NR3BC(O)OR3D, —NR3BOR3D, —OCX3,13, —OCHX3,12 (e.g. hydrogen, halogen, —CF3, —CCl3, —CBr3, —CI3, —CN, —OH, —NH2, —COOH, —CONH2, —NO2, —SH, —SO3H, —SO4H, —SO2NH2, —NHNH2, —ONH2, —NHC(O)NHNH2, —NHC(O)NH2, —NHSO2H, —NHC(O)H, —NHC(O)OH, —NHOH, —OCF3, —OCCl3, —OCBr3, —OCI3, —OCHF2, —OCHCl2, —OCHBr2, —OCHI2), R3E-substituted or unsubstituted C1-C6 alkyl, R3E-substituted or unsubstituted 2 to 6 membered heteroalkyl, R3E-substituted or unsubstituted C3-C6 cycloalkyl, R3E-substituted or unsubstituted 3 to 6 membered heterocycloalkyl, R3E-substituted or unsubstituted phenyl, or R3E-substituted or unsubstituted 5 to 6 membered heteroaryl.


R3E is independently oxo, halogen, —CF3, —CCl3, —CBr3, —CI3, —CN, —OH, —NH2, —COOH, —CONH2, —NO2, —SH, —SO3H, —SO4H, —SO2NH2, —NHNH2, —ONH2, —NHC(O)NHNH2, —NHC(O)NH2, —NHSO2H, —NHC(O)H, —NHC(O)OH, —NHOH, —OCF3, —OCCl3, —OCBr3, —OCI3, —OCHF2, —OCHCl2, —OCHBr2, —OCHI2, R3F-substituted or unsubstituted alkyl, R3F-substituted or unsubstituted heteroalkyl, R3F-substituted or unsubstituted cycloalkyl, R3F-substituted or unsubstituted heterocycloalkyl, R3F-substituted or unsubstituted aryl, or R3F-substituted or unsubstituted heteroaryl. In embodiments, R3E is independently oxo, halogen, —CF3, —CCl3, —CBr3, —CI3, —CN, —OH, —NH2, —COOH, —CONH2, —NO2, —SH, —SO3H, —SO4H, —SO2NH2, —NHNH2, —ONH2, —NHC(O)NHNH2, —NHC(O)NH2, —NHSO2H, —NHC(O)H, —NHC(O)OH, —NHOH, —OCF3, —OCCl3, —OCBr3, —OCI3, —OCHF2, —OCHCl2, —OCHBr2, —OCHI2, R3F-substituted or unsubstituted C1-C6 alkyl, R3F-substituted or unsubstituted 2 to 6 membered heteroalkyl, R3F-substituted or unsubstituted C3-C6 cycloalkyl, R3F-substituted or unsubstituted 3 to 6 membered heterocycloalkyl, R3F-substituted or unsubstituted phenyl, or R3F-substituted or unsubstituted 5 to 6 membered heteroaryl.


In embodiments, R4 is independently hydrogen, halogen, —CX4,13, —CHX4,12, —CH2X4,1, —CN, —SOn4R4A, —SOv4NR4BR4C, —NHNR4BR4C, —ONR4BR4C, —NHC(O)NHNR4BR4C, —NHC(O)NR4BR4C, —N(O)m4, —NR4BR4C, —C(O)R4D, —C(O)OR4D, —C(O)NR4BR4C, —OR4A, —NR4BSO2R4A, —NR4BC(O)R4D, —NR4BC(O)OR4D, —NR4BOR4D, —OCX4,13, —OCHX4,12 (e.g. hydrogen, halogen, —CF3, —CCl3, —CBr3, —CI3, —CN, —OH, —NH2, —COOH, —CONH2, —NO2, —SH, —SO3H, —SO4H, —SO2NH2, —NHNH2, —ONH2, —NHC(O)NHNH2, —NHC(O)NH2, —NHSO2H, —NHC(O)H, —NHC(O)OH, —NHOH, —OCF3, —OCCl3, —OCBr3, —OCI3, —OCHF2, —OCHCl2, —OCHBr2, —OCHI2), R4E-substituted or unsubstituted alkyl, R4E-substituted or unsubstituted heteroalkyl, R4E-substituted or unsubstituted cycloalkyl, R4E-substituted or unsubstituted heterocycloalkyl, R4E-substituted or unsubstituted aryl, or R4E-substituted or unsubstituted heteroaryl. In embodiments, R4 is independently hydrogen, halogen, —CX4,13, —CHX4,12, —CH2X4,1, —CN, —SOn4R4A, —SOv4NR4BR4C, —NHNR4BR4C, —ONR4BR4C, —NHC(O)NHNR4BR4C, —NHC(O)NR4BR4C, —N(O)m4, —NR4BR4C, —C(O)R4D, —C(O)OR4D, —C(O)NR4BR4C, —OR4A, —NR4BSO2R4A, —NR4BC(O)R4D, —NR4BC(O)OR4D, —NR4BOR4D, —OCX4,13, —OCHX4,12 (e.g. hydrogen, halogen, —CF3, —CCl3, —CBr3, —CI3, —CN, —OH, —NH2, —COOH, —CONH2, —NO2, —SH, —SO3H, —SO4H, —SO2NH2, —NHNH2, —ONH2, —NHC(O)NHNH2, —NHC(O)NH2, —NHSO2H, —NHC(O)H, —NHC(O)OH, —NHOH, —OCF3, —OCCl3, —OCBr3, —OCI3, —OCHF2, —OCHCl2, —OCHBr2, —OCHI2), R4E-substituted or unsubstituted C1-C6 alkyl, R4E-substituted or unsubstituted 2 to 6 membered heteroalkyl, R4E-substituted or unsubstituted C3-C6 cycloalkyl, R4E-substituted or unsubstituted 3 to 6 membered heterocycloalkyl, R4E-substituted or unsubstituted phenyl, or R4E-substituted or unsubstituted 5 to 6 membered heteroaryl. R3 and R4 may optionally be joined to form a R4E-substituted or unsubstituted 3 to 6 membered heterocycloalkyl or R4E-substituted or unsubstituted 5 to 6 membered heteroaryl.


R4E is independently oxo, halogen, —CF3, —CCl3, —CBr3, —CI3, —CN, —OH, —NH2, —COOH, —CONH2, —NO2, —SH, —SO3H, —SO4H, —SO2NH2, —NHNH2, —ONH2, —NHC(O)NHNH2, —NHC(O)NH2, —NHSO2H, —NHC(O)H, —NHC(O)OH, —NHOH, —OCF3, —OCCl3, —OCBr3, —OCI3, —OCHF2, —OCHCl2, —OCHBr2, —OCHI2, R4F-substituted or unsubstituted alkyl, R4F-substituted or unsubstituted heteroalkyl, R4F-substituted or unsubstituted cycloalkyl, R4F-substituted or unsubstituted heterocycloalkyl, R4F-substituted or unsubstituted aryl, or R4F-substituted or unsubstituted heteroaryl. In embodiments, R4E is independently oxo, halogen, —CF3, —CCI3, —CBr3, —CI3, —CN, —OH, —NH2, —COOH, —CONH2, —NO2, —SH, —SO3H, —SO4H, —SO2NH2, —NHNH2, —ONH2, —NHC(O)NHNH2, —NHC(O)NH2, —NHSO2H, —NHC(O)H, —NHC(O)OH, —NHOH, —OCF3, —OCCl3, —OCBr3, —OCI3, —OCHF2, —OCHCl2, —OCHBr2, —OCHI2, R4F-substituted or unsubstituted C1-C6 alkyl, R4F-substituted or unsubstituted 2 to 6 membered heteroalkyl, R4F-substituted or unsubstituted C3-C6 cycloalkyl, R4F-substituted or unsubstituted 3 to 6 membered heterocycloalkyl, R4F-substituted or unsubstituted phenyl, or R4F-substituted or unsubstituted 5 to 6 membered heteroaryl.


In embodiments, R5 is independently hydrogen, halogen, —CX5,13, —CHX5,12, —CH2X5,1, —CN, —SOn5R5A, —SOv5NR5BR5C, —NHNR5BR5C, —ONR5BR5C, —NHC(O)NHNR5BR5C, —NHC(O)NR5BR5C, —N(O)m5, —NR5BR5C, —C(O)R5D, —C(O)OR5D, —C(O)NR5BR5C, —OR5A, —NR5BSO2R5A, —NR5BC(O)R5D, —NR5BC(O)OR5D, —NR5BOR5D, —OCX5,13, —OCHX5,12 (e.g. hydrogen, halogen, —CF3, —CCl3, —CBr3, —CI3, —CN, —OH, —NH2, —COOH, —CONH2, —NO2, —SH, —SO3H, —SO4H, —SO2NH2, —NHNH2, —ONH2, —NHC(O)NHNH2, —NHC(O)NH2, —NHSO2H, —NHC(O)H, —NHC(O)OH, —NHOH, —OCF3, —OCCl3, —OCBr3, —OCI3, —OCHF2, —OCHCl2, —OCHBr2, —OCHI2), R5E-substituted or unsubstituted alkyl, R5E-substituted or unsubstituted heteroalkyl, R5E-substituted or unsubstituted cycloalkyl, R5E-substituted or unsubstituted heterocycloalkyl, R5E-substituted or unsubstituted aryl, or R5E-substituted or unsubstituted heteroaryl. In embodiments, R5 is independently hydrogen, halogen, —CX5,13, —CHX5,12, —CH2X5,1, —CN, —SOn5R5A, —SOv5NR5BR5C, —NHNR5BR5C, —ONR5BR5C, —NHC(O)NHNR5BR5C, —NHC(O)NR5BR5C, —N(O)m5, —NR5BR5C, —C(O)R5D, —C(O)OR5D, —C(O)NR5BR5C, —OR5A, —NR5BSO2R5A, —NR5BC(O)R5D, —NR5BC(O)OR5D, —NR5BOR5D, —OCX5,13, —OCHX5,12 (e.g. hydrogen, halogen, —CF3, —CCl3, —CBr3, —CI3, —CN, —OH, —NH2, —COOH, —CONH2, —NO2, —SH, —SO3H, —SO4H, —SO2NH2, —NHNH2, —ONH2, —NHC(O)NHNH2, —NHC(O)NH2, —NHSO2H, —NHC(O)H, —NHC(O)OH, —NHOH, —OCF3, —OCCl3, —OCBr3, —OCI3, —OCHF2, —OCHCl2, —OCHBr2, —OCHI2), R5E-substituted or unsubstituted C1-C6 alkyl, R5E-substituted or unsubstituted 2 to 6 membered heteroalkyl, R5E-substituted or unsubstituted C3-C6 cycloalkyl, R5E-substituted or unsubstituted 3 to 6 membered heterocycloalkyl, R5E-substituted or unsubstituted phenyl, or R5E-substituted or unsubstituted 5 to 6 membered heteroaryl.


R5E is independently oxo, halogen, —CF3, —CCl3, —CBr3, —CI3, —CN, —OH, —NH2, —COOH, —CONH2, —NO2, —SH, —SO3H, —SO4H, —SO2NH2, —NHNH2, —OMR, —NHC(O)NHNH2, —NHC(O)NH2, —NHSO2H, —NHC(O)H, —NHC(O)OH, —NHOH, —OCF3, —OCCl3, —OCBr3, —OCI3, —OCHF2, —OCHCl2, —OCHBr2, —OCHI2, R5F-substituted or unsubstituted alkyl, R5F-substituted or unsubstituted heteroalkyl, R5F-substituted or unsubstituted cycloalkyl, R5F-substituted or unsubstituted heterocycloalkyl, R5F-substituted or unsubstituted aryl, or R5F-substituted or unsubstituted heteroaryl. In embodiments, R5E is independently oxo, halogen, —CF3, —CCl3, —CBr3, —CI3, —CN, —OH, —NH2, —COOH, —CONH2, —NO2, —SH, —SO3H, —SO4H, —SO2NH2, —NHNH2, —ONH2, —NHC(O)NHNH2, —NHC(O)NH2, —NHSO2H, —NHC(O)H, —NHC(O)OH, —NHOH, —OCF3, —OCCl3, —OCBr3, —OCI3, —OCHF2, —OCHCl2, —OCHBr2, —OCHI2, R5F-substituted or unsubstituted C1-C6 alkyl, R5F-substituted or unsubstituted 2 to 6 membered heteroalkyl, R5F-substituted or unsubstituted C3-C6 cycloalkyl, R5F-substituted or unsubstituted 3 to 6 membered heterocycloalkyl, R5F-substituted or unsubstituted phenyl, or R5F-substituted or unsubstituted 5 to 6 membered heteroaryl.


In embodiments, R1 and R2, R2 and R3, R3 and R4, or R1 and R5 are joined to form, together with the atoms to which they are attached, substituted or unsubstituted (e.g. C3-C6) cycloalkyl, substituted or unsubstituted (e.g. 3 to 6 membered) heterocycloalkyl, substituted or unsubstituted (e.g. phenyl) aryl, or substituted or unsubstituted (e.g. 5 to 6 membered) heteroaryl. In embodiments, R1 and R2, R2 and R3, R3 and R4, or R1 and R5 are joined to form, together with the atoms to which they are attached, substituted or unsubstituted (e.g. C3-C6) cycloalkyl, substituted or unsubstituted (e.g. 3 to 6 membered) heterocycloalkyl, substituted or unsubstituted (e.g. phenyl) aryl, or substituted or unsubstituted (e.g. 5 to 6 membered) heteroaryl. In embodiments, R1 and R2, R2 and R3, R3 and R4, or R1 and R5 are joined to form, together with the atoms to which they are attached, substituted or unsubstituted (e.g. C3-C6) heterocycloalkyl, substituted or unsubstituted (e.g. phenyl) aryl, or substituted or unsubstituted (e.g. 5 to 6 membered) heteroaryl. In embodiments, R1 and R2, R2 and R3, R3 and R4, or R1 and R5 are joined to form, together with the atoms to which they are attached, substituted or unsubstituted (e.g. phenyl) aryl, or substituted or unsubstituted (e.g. 5 to 6 membered) heteroaryl. In embodiments, R1 and R2, R2 and R3, R3 and R4, or R1 and R5 are joined to form, together with the atoms to which they are attached, substituted or unsubstituted (e.g. 5 to 6 membered) heteroaryl.


In embodiments, R2 and R3 are joined to form R2E-substituted or unsubstituted cycloalkyl, R2E-substituted or unsubstituted heterocycloalkyl, R2E-substituted or unsubstituted aryl, or R2E-substituted or unsubstituted heteroaryl. In embodiments, R2 and R3 are joined to form R2E-substituted or unsubstituted heterocycloalkyl, R2E-substituted or unsubstituted aryl, or R2E-substituted or unsubstituted heteroaryl. In embodiments, R2 and R3 are joined to form R2E-substituted or unsubstituted aryl, or R2E-substituted or unsubstituted heteroaryl. In embodiments, R2E-substituted or unsubstituted heteroaryl. In embodiments, R2 and R3 are joined to form R2E-substituted or unsubstituted 5-6 membered heteroaryl. In embodiments, R2 and R3 are joined to form, together with the atoms to which they are attached




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In other words, R2-R3 are joined to form ═N—O—N═




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In embodiment, the compound is formula IC:




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In formula IC, R1, R4, R5, R6, R7, R8, R9, R10, R11, R12, R13 and R14 are as described herein. In embodiments, compound is




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In embodiments, R6 is independently hydrogen, halogen, —CX6,13, —CHX6,12, —CH2X6,1, —CN, —SOn6R6A, —SOv6NR6BR6C, —NHNR6BR6C, —ONR6BR6C, —NHC(O)NHNR6BR6C, —NHC(O)NR6BR6C, —N(O)m6, —NR6BR6C, —C(O)R6D, —C(O)OR6D, —C(O)NR6BR6C, —OR6A, —NR6BSO2R6A, —NR6BC(O)R6D, —NR6BC(O)OR6D, —NR6BOR6D, —OCX6,13, —OCHX6,12 (e.g. hydrogen, halogen, —CF3, —CCl3, —CBr3, —CI3, —CN, —OH, —NH2, —COOH, —CONH2, —NO2, —SH, —SO3H, —SO4H, —SO2NH2, —NHNH2, —ONH2, —NHC(O)NHNH2, —NHC(O)NH2, —NHSO2H, —NHC(O)H, —NHC(O)OH, —NHOH, —OCF3, —OCCl3, —OCBr3, —OCI3, —OCHF2, —OCHCl2, —OCHBr2, —OCHI2), R6E-substituted or unsubstituted alkyl, R6E-substituted or unsubstituted heteroalkyl, R6E-substituted or unsubstituted cycloalkyl, R6E-substituted or unsubstituted heterocycloalkyl, R6E-substituted or unsubstituted aryl, or R6E-substituted or unsubstituted heteroaryl. In embodiments, R6 is independently hydrogen, halogen, —CX6,13, —CHX6,12, —CH2X6,1, —CN, —SOn6R6A, —SOv6NR6BR6C, —NHNR6BR6C, —ONR6BR6C, —NHC(O)NHNR6BR6C, —NHC(O)NR6BR6C, —N(O)m6, —NR6BR6C, —C(O)R6D, —C(O)OR6D, —C(O)NR6BR6C, —OR6A, —NR6BSO2R6A, —NR6BC(O)R6D, —NR6BC(O)OR6D, —NR6BOR6D, —OCX6,13, —OCHX6,12 (e.g. hydrogen, halogen, —CF3, —CCl3, —CBr3, —CI3, —CN, —OH, —NH2, —COOH, —CONH2, —NO2, —SH, —SO3H, —SO4H, —SO2NH2, —NHNH2, —ONH2, —NHC(O)NHNH2, —NHC(O)NH2, —NHSO2H, —NHC(O)H, —NHC(O)OH, —NHOH, —OCF3, —OCCl3, —OCBr3, —OCI3, —OCHF2, —OCHCl2, —OCHBr2, —OCHI2), R6E-substituted or unsubstituted C1-C6 alkyl, R6E-substituted or unsubstituted 2 to 6 membered heteroalkyl, R6E-substituted or unsubstituted C3-C6 cycloalkyl, R6E-substituted or unsubstituted 3 to 6 membered heterocycloalkyl, R6E-substituted or unsubstituted phenyl, or R6E-substituted or unsubstituted 5 to 6 membered heteroaryl.


R6E is independently oxo, halogen, —CF3, —CCl3, —CBr3, —CI3, —CN, —OH, —NH2, —COOH, —CONH2, —NO2, —SH, —SO3H, —SO4H, —SO2NH2, —NHNH2, —ONH2, —NHC(O)NHNH2, —NHC(O)NH2, —NHSO2H, —NHC(O)H, —NHC(O)OH, —NHOH, —OCF3, —OCCl3, —OCBr3, —OCI3, —OCHF2, —OCHCl2, —OCHBr2, —OCHI2, R6F-substituted or unsubstituted alkyl, R6F-substituted or unsubstituted heteroalkyl, R6F-substituted or unsubstituted cycloalkyl, R6F-substituted or unsubstituted heterocycloalkyl, R6F-substituted or unsubstituted aryl, or R6F-substituted or unsubstituted heteroaryl. In embodiments, R6E is independently oxo, halogen, —CF3, —CCl3, —CBr3, —CI3, —CN, —OH, —NH2, —COOH, —CONH2, —NO2, —SH, —SO3H, —SO4H, —SO2NH2, —NHNH2, —ONH2, —NHC(O)NHNH2, —NHC(O)NH2, —NHSO2H, —NHC(O)H, —NHC(O)OH, —NHOH, —OCF3, —OCCl3, —OCBr3, —OCI3, —OCHF2, —OCHCl2, —OCHBr2, —OCHI2, R6F-substituted or unsubstituted C1-C6 alkyl, R6F-substituted or unsubstituted 2 to 6 membered heteroalkyl, R6F-substituted or unsubstituted C3-C6 cycloalkyl, R6F-substituted or unsubstituted 3 to 6 membered heterocycloalkyl, R6F-substituted or unsubstituted phenyl, or R6F-substituted or unsubstituted 5 to 6 membered heteroaryl.


In embodiments, R7 is independently hydrogen, halogen, —CX7,13, —CHX7,12, —CH2X7,1, —CN, —SOn7R7A, —SOv7NR7BR7C, —NHNR7BR7C, —ONR7BR7C, —NHC(O)NHNR7BR7C, —NHC(O)NR7BR7C, —N(O)m7, —NR7BR7C, —C(O)R7D, —C(O)OR7D, —C(O)NR7BR7C, —OR7A, —NR7BSO2R7A, —NR7BC(O)R7D, —NR7BC(O)OR7D, —NR7BOR7D, —OCX7,13, —OCHX7,12 (e.g. hydrogen, halogen, —CF3, —CCl3, —CBr3, —CI3, —CN, —OH, —NH2, —COOH, —CONH2, —NO2, —SH, —SO3H, —SO4H, —SO2NH2, —NHNH2, —ONH2, —NHC(O)NHNH2, —NHC(O)NH2, —NHSO2H, —NHC(O)H, —NHC(O)OH, —NHOH, —OCF3, —OCCl3, —OCBr3, —OCI3, —OCHF2, —OCHCl2, —OCHBr2, —OCHI2), R7E-substituted or unsubstituted alkyl, R7E-substituted or unsubstituted heteroalkyl, R7E-substituted or unsubstituted cycloalkyl, R7E-substituted or unsubstituted heterocycloalkyl, R7E-substituted or unsubstituted aryl, or R7E-substituted or unsubstituted heteroaryl. In embodiments, R7 is independently hydrogen, halogen, —CX7,13, —CHX7,12, —CH2X7,1, —CN, —SOn7R7A, —SOv7NR7BR7C, —NHNR7BR7C, —ONR7BR7C, —NHC(O)NHNR7BR7C, —NHC(O)NR7BR7C, —N(O)m7, —NR7BR7C, —C(O)R7D, —C(O)OR7D, —C(O)NR7BR7C, —OR7A, —NR7BSO2R7A, —NR7BC(O)R7D, —NR7BC(O)OR7D, —NR7BOR7D, —OCX7,13, —OCHX7,12 (e.g. hydrogen, halogen, —CF3, —CCl3, —CBr3, —CI3, —CN, —OH, —NH2, —COOH, —CONH2, —NO2, —SH, —SO3H, —SO4H, —SO2NH2, —NHNH2, —ONH2, —NHC(O)NHNH2, —NHC(O)NH2, —NHSO2H, —NHC(O)H, —NHC(O)OH, —NHOH, —OCF3, —OCCl3, —OCBr3, —OCI3, —OCHF2, —OCHCl2, —OCHBr2, —OCHI2), R7E-substituted or unsubstituted C1-C6 alkyl, R7E-substituted or unsubstituted 2 to 6 membered heteroalkyl, R7E-substituted or unsubstituted C3-C6 cycloalkyl, R7E-substituted or unsubstituted 3 to 6 membered heterocycloalkyl, R7E-substituted or unsubstituted phenyl, or R7E-substituted or unsubstituted 5 to 6 membered heteroaryl.


R7E is independently oxo, halogen, —CF3, —CCl3, —CBr3, —CI3, —CN, —OH, —NH2, —COOH, —CONH2, —NO2, —SH, —SO3H, —SO4H, —SO2NH2, —NHNH2, —ONH2, —NHC(O)NHNH2, —NHC(O)NH2, —NHSO2H, —NHC(O)H, —NHC(O)OH, —NHOH, —OCF3, —OCCl3, —OCBr3, —OCI3, —OCHF2, —OCHCl2, —OCHBr2, —OCHI2, R7F-substituted or unsubstituted alkyl, R7F-substituted or unsubstituted heteroalkyl, R7F-substituted or unsubstituted cycloalkyl, R7F-substituted or unsubstituted heterocycloalkyl, R7F-substituted or unsubstituted aryl, or R7F-substituted or unsubstituted heteroaryl. In embodiments, R7E is independently oxo, halogen, —CF3, —CCl3, —CBr3, —CI3, —CN, —OH, —NH2, —COOH, —CONH2, —NO2, —SH, —SO3H, —SO4H, —SO2NH2, —NHNH2, —ONH2, —NHC(O)NHNH2, —NHC(O)NH2, —NHSO2H, —NHC(O)H, —NHC(O)OH, —NHOH, —OCF3, —OCCl3, —OCBr3, —OCI3, —OCHF2, —OCHCl2, —OCHBr2, —OCHI2, R7F-substituted or unsubstituted C1-C6 alkyl, R7F-substituted or unsubstituted 2 to 6 membered heteroalkyl, R7F-substituted or unsubstituted C3-C6 cycloalkyl, R7F-substituted or unsubstituted 3 to 6 membered heterocycloalkyl, R7F-substituted or unsubstituted phenyl, or R7F-substituted or unsubstituted 5 to 6 membered heteroaryl.


In embodiments, R20 and R7 are joined to form, together with the atoms to which they are attached, substituted or unsubstituted (e.g. C3-C6) cycloalkyl, substituted or unsubstituted (e.g. 3 to 6 membered) heterocycloalkyl, substituted or unsubstituted (e.g. phenyl) aryl or substituted or unsubstituted (e.g. 5 to 6 membered) heteroaryl. In embodiments, L1 is a bond and R20 and R7 are joined to form, together with the atoms to which they are attached, substituted or unsubstituted (e.g. C3-C6) cycloalkyl, substituted or unsubstituted (e.g. 3 to 6 membered) heterocycloalkyl, substituted or unsubstituted (e.g. phenyl) aryl or substituted or unsubstituted (e.g. 5 to 6 membered) heteroaryl. In embodiments, R20 and R7 are joined to form, together with the atoms to which they are attached, substituted or unsubstituted (e.g. C3-C6) cycloalkyl, substituted or unsubstituted (e.g. 3 to 6 membered) heterocycloalkyl or substituted or unsubstituted (e.g. phenyl) aryl. In embodiments, R20 and R7 are joined to form, together with the atoms to which they are attached, substituted or unsubstituted (e.g. C3-C6) cycloalkyl or substituted or unsubstituted (e.g. 3 to 6 membered) heterocycloalkyl. In embodiments, R20 and R7 are joined to form, together with the atoms to which they are attached, substituted or unsubstituted (e.g. 3 to 6 membered) heterocycloalkyl. In embodiments, R20 and R7 are joined to form, together with the atoms to which they are attached, substituted or unsubstituted (e.g. morpholinyl) 6-membered heterocycloalkyl. In embodiments, R20 and R7 are joined to form, together with the atoms to which they are attached, substituted or unsubstituted morpholinyl. In embodiments, R20 and R7 are joined to form R7E- and/or R10E-substituted or unsubstituted (e.g. C3-C6) cycloalkyl, R7E- and/or R10E-substituted or unsubstituted (e.g. 3 to 6 membered) heterocycloalkyl, R7E- and/or R10E-substituted or unsubstituted (e.g. phenyl) aryl or R7E- and/or R10E-substituted or unsubstituted (e.g. 5 to 6 membered) heteroaryl. In embodiments, R20 and R7 are joined to form R7E- and/or R10E-substituted or unsubstituted (e.g. C3-C6) cycloalkyl, R7E- and/or R10E-substituted or unsubstituted (e.g. 3 to 6 membered) heterocycloalkyl or R7E- and/or R10E-substituted or unsubstituted (e.g. phenyl) aryl. In embodiments, R20 and R7 are joined to form R7E- and/or R10E-substituted or unsubstituted (e.g. C3-C6) cycloalkyl or R7E- and/or R10E-substituted or unsubstituted (e.g. 3 to 6 membered) heterocycloalkyl. In embodiments, R20 and R7 are joined to form R7E- and/or R10E-substituted or unsubstituted heterocycloalkyl. In embodiments, R20 and R7 are joined to form R7E- and/or R10E-substituted or unsubstituted morpholinyl.


In embodiments, the compound is




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In embodiments, R7E is hydrogen. In embodiments, R10E is hydrogen. In embodiments, R10E is substituted or unsubstituted aryl. In embodiments, R10E is substituted or unsubstituted phenyl. In embodiments, R10E is phenyl. In embodiments, R1, R2, R3, R4 and R5 are independently hydrogen, NO2, NH2, or NHAc. In embodiments, R1, R2 and R4 are hydrogen. In embodiments, R3 and R5 are independently NO2, NH2, or NHAc. In embodiments, R3 is NO2 and R5 are NH2, or NHAc.


In embodiments, R8 is independently hydrogen, halogen, —CX8,13, —CHX8,12, —CH2X8,1, —CN, —SOn8R8A, —SOv8NR8BR8C, —NHNR8BR8C, —ONR8BR8C, —NHC(O)NHNR8BR8C, —NHC(O)NR8BR8C, —N(O)m8, —NR8BR8C, —C(O)R8D, —C(O)OR8D, —C(O)NR8BR8C, —OR8A, —NR8BSO2R8A, —NR8BC(O)R8D, —NR8BC(O)OR8D, —NR8BOR8D, —OCX8,13, —OCHX8,12 (e.g. hydrogen, halogen, —CF3, —CCl3, —CBr3, —CI3, —CN, —OH, —NH2, —COOH, —CONH2, —NO2, —SH, —SO3H, —SO4H, —SO2NH2, —NHNH2, —ONH2, —NHC(O)NHNH2, —NHC(O)NH2, —NHSO2H, —NHC(O)H, —NHC(O)OH, —NHOH, —OCF3, —OCCl3, —OCBr3, —OCI3, —OCHF2, —OCHCl2, —OCHBr2, —OCHI2), R8E-substituted or unsubstituted alkyl, R8E-substituted or unsubstituted heteroalkyl, R8E-substituted or unsubstituted cycloalkyl, R8E-substituted or unsubstituted heterocycloalkyl, R8E-substituted or unsubstituted aryl, or R8E-substituted or unsubstituted heteroaryl. In embodiments, R8 is independently hydrogen, halogen, —CX8,13, —CHX8,12, —CH2X8,1, —CN, —SOv8R8A, —SOv8NR8BR8C, —NHNR8BR8C, —ONR8BR8C, —NHC(O)NHNR8BR8C, —NHC(O)NR8BR8C, —N(O)m8, —NR8BR8C, —C(O)R8D, —C(O)OR8D, —C(O)NR8BR8C, —OR8A, —NR8BSO2R8A, —NR8BC(O)R8D, —NR8BC(O)OR8D, —NR8BOR8D, —OCX8,13, —OCHX8,12 (e.g. hydrogen, halogen, —CF3, —CCl3, —CBr3, —CI3, —CN, —OH, —NH2, —COOH, —CONH2, —NO2, —SH, —SO3H, —SO4H, —SO2NH2, —NHNH2, —ONH2, —NHC(O)NHNH2, —NHC(O)NH2, —NHSO2H, —NHC(O)H, —NHC(O)OH, —NHOH, —OCF3, —OCCl3, —OCBr3, —OCI3, —OCHF2, —OCHCl2, —OCHBr2, —OCHI2), R8E-substituted or unsubstituted C1-C6 alkyl, R8E-substituted or unsubstituted 2 to 6 membered heteroalkyl, R8E-substituted or unsubstituted C3-C6 cycloalkyl, R8E-substituted or unsubstituted 3 to 6 membered heterocycloalkyl, R8E-substituted or unsubstituted phenyl, or R8E-substituted or unsubstituted 5 to 6 membered heteroaryl.


R8E is independently oxo, halogen, —CF3, —CCl3, —CBr3, —CI3, —CN, —OH, —NH2, —COOH, —CONH2, —NO2, —SH, —SO3H, —SO4H, —SO2NH2, —NHNH2, —ONH2, —NHC(O)NHNH2, —NHC(O)NH2, —NHSO2H, —NHC(O)H, —NHC(O)OH, —NHOH, —OCF3, —OCCl3, —OCBr3, —OCI3, —OCHF2, —OCHCl2, —OCHBr2, —OCHI2, R8F-substituted or unsubstituted alkyl, R8F-substituted or unsubstituted heteroalkyl, R8F-substituted or unsubstituted cycloalkyl, R8F-substituted or unsubstituted heterocycloalkyl, R8F-substituted or unsubstituted aryl, or R8F-substituted or unsubstituted heteroaryl. In embodiments, R8E is independently oxo, halogen, —CF3,—CCl3, —CBr3, —CI3, —CN, —OH, —NH2, —COOH, —CONH2, —NO2, —SH, —SO3H, —SO4H, —SO2NH2, —NHNH2, —ONH2, —NHC(O)NHNH2, —NHC(O)NH2, —NHSO2H, —NHC(O)H, —NHC(O)OH, —NHOH, —OCF3, —OCCl3, —OCBr3, —OCI3, —OCHF2, —OCHCl2, —OCHBr2, —OCHI2, R8F-substituted or unsubstituted C1-C6 alkyl, R8F-substituted or unsubstituted 2 to 6 membered heteroalkyl, R8F-substituted or unsubstituted C3-C6 cycloalkyl, R8F-substituted or unsubstituted 3 to 6 membered heterocycloalkyl, R8F-substituted or unsubstituted phenyl, or R8F-substituted or unsubstituted 5 to 6 membered heteroaryl.


In embodiments, R9 is independently hydrogen, halogen, —CX9,13, —CHX9,12, —CH2X9,1, —CN, —SOn9R9A, —SOv9NR9BR9C, —NHNR9BR9C, —ONR9BR9C, —NHC(O)NHNR9BR9C, —NHC(O)NR9BR9C, —N(O)m9, —NR9BR9C, —C(O)R9D, —C(O)OR9D, —C(O)NR9BR9C, —OR9A, —NR9BSO2R9A, —NR9BC(O)R9D, —NR9BC(O)OR9D, —NR9BOR9D, —OCX9,13, —OCHX9,12 (e.g. hydrogen, halogen, —CF3, —CCl3, —CBr3, —CI3, —CN, —OH, —NH2, —COOH, —CONH2, —NO2, —SH, —SO3H, —SO4H, —SO2NH2, —NHNH2, —ONH2, —NHC(O)NHNH2, —NHC(O)NH2, —NHSO2H, —NHC(O)H, —NHC(O)OH, —NHOH, —OCF3, —OCCl3, —OCBr3, —OCI3, —OCHF2, —OCHCl2, —OCHBr2, —OCHI2), R9E-substituted or unsubstituted alkyl, R9E-substituted or unsubstituted heteroalkyl, R9E-substituted or unsubstituted cycloalkyl, R9E-substituted or unsubstituted heterocycloalkyl, R9E-substituted or unsubstituted aryl, or R9E-substituted or unsubstituted heteroaryl. In embodiments, R9 is independently hydrogen, halogen, —CX9,13, —CHX9,12, —CH2X9,1, —CN, —SOn9R9A, —SOv9NR9BR9C, —NHNR9BR9C, —ONR9BR9C, —NHC(O)NHNR9BR9C, —NHC(O)NR9BR9C, —N(O)m9, —NR9BR9C, —C(O)R9D, —C(O)OR9D, —C(O)NR9BR9C, —OR9A, —NR9BSO2R9A, —NR9BC(O)R9D, —NR9BC(O)OR9D, —NR9BOR9D, —OCX9,13, —OCHX9,12 (e.g. hydrogen, halogen, —CF3, —CCl3, —CBr3, —CI3, —CN, —OH, —NH2, —COOH, —CONH2, —NO2, —SH, —SO3H, —SO4H, —SO2NH2, —NHNH2, —ONH2, —NHC(O)NHNH2, —NHC(O)NH2, —NHSO2H, —NHC(O)H, —NHC(O)OH, —NHOH, —OCF3, —OCCl3, —OCBr3, —OCI3, —OCHF2, —OCHCl2, —OCHBr2, —OCHI2), R9E-substituted or unsubstituted C1-C6 alkyl, R9E-substituted or unsubstituted 2 to 6 membered heteroalkyl, R9E-substituted or unsubstituted C3-C6 cycloalkyl, R9E-substituted or unsubstituted 3 to 6 membered heterocycloalkyl, R9E-substituted or unsubstituted phenyl, or R9E-substituted or unsubstituted 5 to 6 membered heteroaryl.


R9E is independently oxo, halogen, —CF3, —CCl3, —CBr3, —CI3, —CN, —OH, —NH2, —COOH, —CONH2, —NO2, —SH, —SO3H, —SO4H, —SO2NH2, —NHNH2, —ONH2, —NHC(O)NHNH2, —NHC(O)NH2, —NHSO2H, —NHC(O)H, —NHC(O)OH, —NHOH, —OCF3, —OCCl3, —OCBr3, —OCI3, —OCHF2, —OCHCl2, —OCHBr2, —OCHI2, R9F-substituted or unsubstituted alkyl, R9F-substituted or unsubstituted heteroalkyl, R9F-substituted or unsubstituted cycloalkyl, R9F-substituted or unsubstituted heterocycloalkyl, R9F-substituted or unsubstituted aryl, or R9F-substituted or unsubstituted heteroaryl. In embodiments, R9E is independently oxo, halogen, —CF3, —CCI3, —CBr3, —CI3, —CN, —OH, —NH2, —COOH, —CONH2, —NO2, —SH, —SO3H, —SO4H, —SO2NH2, —NHNH2, —ONH2, —NHC(O)NHNH2, —NHC(O)NH2, —NHSO2H, —NHC(O)H, —NHC(O)OH, —NHOH, —OCF3, —OCCl3, —OCBr3, —OCI3, —OCHF2, —OCHCl2, —OCHBr2, —OCHI2, R9F-substituted or unsubstituted C1-C6 alkyl, R9F-substituted or unsubstituted 2 to 6 membered heteroalkyl, R9F-substituted or unsubstituted C3-C6 cycloalkyl, R9F-substituted or unsubstituted 3 to 6 membered heterocycloalkyl, R9F-substituted or unsubstituted phenyl, or R9F-substituted or unsubstituted 5 to 6 membered heteroaryl.


In embodiments, R6 and R9, R8 and R9, or R7 and R8 are joined to form, together with the atoms to which they are attached, substituted or unsubstituted (e.g. C3-C6) cycloalkyl, substituted or unsubstituted (e.g. 3 to 6 membered) heterocycloalkyl, substituted or unsubstituted (e.g. phenyl) aryl, or substituted or unsubstituted (e.g. 5 to 6 membered) heteroaryl. In embodiments, R6 and R9, R8 and R9, or R7 and R8 are joined to form, together with the atoms to which they are attached, substituted or unsubstituted (e.g. C3-C6) cycloalkyl, substituted or unsubstituted (e.g. 3 to 6 membered) heterocycloalkyl, substituted or unsubstituted (e.g. phenyl) aryl, or substituted or unsubstituted (e.g. 5 to 6 membered) heteroaryl. In embodiments, R6 and R9, R8 and R9 or R7 and R8 are joined to form, together with the atoms to which they are attached, substituted or unsubstituted (e.g. 3 to 6 membered) heterocycloalkyl, substituted or unsubstituted (e.g. phenyl) aryl, or substituted or unsubstituted (e.g. 5 to 6 membered) heteroaryl. In embodiments, R6 and R9, R8 and R9 R7 and R8 are joined to form, together with the atoms to which they are attached, substituted or unsubstituted (e.g. phenyl) aryl, or substituted or unsubstituted (e.g. 5 to 6 membered) heteroaryl. In embodiments, R1 and R2, R2 and R3, R3 and R4, or R1 and R5 are joined to form, together with the atoms to which they are attached, substituted or unsubstituted (e.g. phenyl) aryl. In embodiments, R1 and R2, R2 and R3, R3 and R4, or R1 and R5 are joined to form, together with the atoms to which they are attached, substituted or unsubstituted phenyl.


In embodiments, R8 and R9 are joined to form R8E-substituted or unsubstituted (e.g. C3-C6) cycloalkyl, R8E-substituted or unsubstituted (e.g. 3 to 6 membered) heterocycloalkyl, R8E-substituted or unsubstituted (e.g. phenyl) aryl or R8E-substituted or unsubstituted (e.g. 5 to 6 membered) heteroaryl. In embodiments, R8 and R9 are joined to form R8E-substituted or unsubstituted (e.g. 3 to 6 membered) heterocycloalkyl, R8E-substituted or unsubstituted (e.g. phenyl) aryl or R8E-substituted or unsubstituted (e.g. 5 to 6 membered) heteroaryl. In embodiments, R8 and R9 are joined to form R8E-substituted or unsubstituted (e.g. phenyl) aryl or R8E-substituted or unsubstituted (e.g. 5 to 6 membered) heteroaryl. In embodiments, R8 and R9 are joined to form R8E-substituted or unsubstituted (e.g. phenyl) aryl. In embodiments, R8 and R9 are joined to form, together with the atoms to which they are attached, R8E-substituted or unsubstituted 5-6 membered aryl (e.g. phenyl). In embodiments, R8 and R9 are joined to form, together with the atoms to which they are attached, R8E-substituted or unsubstituted phenyl. In embodiments, R8 and R9 are joined to form, together with the atoms to which they are attached, phenyl substituted at least one halogen, methyl or ethyl. In embodiments, R8 and R9 are joined to form, together with the atoms to which they are attached, phenyl substituted at least two halogen, methyl or ethyl. In embodiments, R6 and R7 are hydrogen.


In embodiments, the compound is




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wherein n8 is an integer from 0 to 4. In embodiments, R8E is halogen or methyl. In embodiments, R8E is halogen.


In embodiments, R6 and R9 are joined to form R6E-substituted or unsubstituted (e.g. C3-C6) cycloalkyl, R6E-substituted or unsubstituted (e.g. 3 to 6 membered) heterocycloalkyl, R6E-substituted or unsubstituted (e.g. phenyl) aryl or R6E-substituted or unsubstituted (e.g. 5 to 6 membered) heteroaryl. In embodiments, R6 and R9 are joined to form R6E-substituted or unsubstituted (e.g. 3 to 6 membered) heterocycloalkyl, R6E-substituted or unsubstituted (e.g. phenyl) aryl or R6E-substituted or unsubstituted (e.g. 5 to 6 membered) heteroaryl. In embodiments, R6 and R9 are joined to form R6E-substituted or unsubstituted (e.g. phenyl) aryl or R6E-substituted or unsubstituted (e.g. 5 to 6 membered) heteroaryl. In embodiments, R6 and R9 are joined to form R6E-substituted or unsubstituted (e.g. phenyl) aryl. In embodiments, R6 and R9 are joined to form R6E-substituted or unsubstituted 5-6 membered aryl (e.g. phenyl). In embodiments, R6 and R9 are joined to form R6E-substituted or unsubstituted phenyl. In embodiments, R6 and R9 are joined to form, together with the atoms to which they are attached, phenyl substituted at least one halogen, methyl or ethyl. In embodiments, R6 and R9 are joined to form, together with the atoms to which they are attached, phenyl substituted at least two halogen, methyl or ethyl. In embodiments, R7 and R8 are hydrogen. In embodiments, the compound is




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wherein n6 is an integer from 0 to 4. In embodiments, R6E is halogen or methyl. In embodiments, R6E is halogen.


In embodiments, R7 and R8 are joined to form R7E-substituted or unsubstituted (e.g. C3-C6) cycloalkyl, R7E-substituted or unsubstituted (e.g. 3 to 6 membered) heterocycloalkyl, R7E-substituted or unsubstituted (e.g. phenyl) aryl or R7E-substituted or unsubstituted (e.g. 5 to 6 membered) heteroaryl. In embodiments, R7 and R8 are joined to form R7E-substituted or unsubstituted (e.g. 3 to 6 membered) heterocycloalkyl, R7E-substituted or unsubstituted (e.g. phenyl) aryl or R7E-substituted or unsubstituted (e.g. 5 to 6 membered) heteroaryl. In embodiments, R7 and R8 are joined to form R7E-substituted or unsubstituted (e.g. phenyl) aryl or R7E-substituted or unsubstituted (e.g. 5 to 6 membered) heteroaryl. In embodiments, R7 and R8 are joined to form R7E-substituted or unsubstituted 5-6 membered aryl (e.g. phenyl). In embodiments, R7 and R8 are joined to form R7E-substituted or unsubstituted phenyl. In embodiments, R7 and R8 are joined to form, together with the atoms to which they are attached, phenyl substituted at least one halogen, methyl or ethyl. In embodiments, R7 and R8 are joined to form, together with the atoms to which they are attached, phenyl substituted at least two halogen, methyl or ethyl. In embodiments, R6 and R9 are hydrogen. In embodiments, the compound is




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wherein n7 is an integer from 0 to 4. In embodiments, R7E is halogen or methyl. In embodiments, R7E is halogen.


In embodiments, R10 is independently hydrogen, halogen, —CX10,13, —CHX10,12, —CH2X10,1, —CN, —SOn10R10A, —SOv10NR10BR10C, —NHNR10BR10C, —ONR10BR10C, —NHC(O)NHNR10BR10C, —NHC(O)NR10BR10C, —N(O)m10, —NR10BR10C, —C(O)R10D, —C(O)OR10D, —C(O)NR10BR10C, —OR10A, —NR10BSO2R10A, —NR10BC(O)R10D, —NR10BC(O)OR10D, —NR10BOR10D, —OCX10,13, —OCHX10,12 (e.g. hydrogen, halogen, —CF3, —CCl3, —CBr3, —CI3, —CN, —OH, —NH2, —COOH, —CONH2, —NO2, —SH, —SO3H, —SO4H, —SO2NH2, —NHNH2, —ONH2, —NHC(O)NHNH2, —NHC(O)NH2, —NHSO2H, —NHC(O)H, —NHC(O)OH, —NHOH, —OCF3, —OCCl3, —OCBr3, —OCI3, —OCHF2, —OCHCl2, —OCHBr2, —OCHI2), R10E-substituted or unsubstituted alkyl, R10E-substituted or unsubstituted heteroalkyl, R10E-substituted or unsubstituted cycloalkyl, R10E-substituted or unsubstituted heterocycloalkyl, R10E-substituted or unsubstituted aryl, or R10E-substituted or unsubstituted heteroaryl. In embodiments, R10 is independently hydrogen, halogen, —CX10,13, —CHX10,12, —CH2X10,1, —CN, —SOn10R10A, —SOv10NR10BR10C, —NHNR10BR10C, —ONR10BR10C, —NHC(O)NHNR10BR10C, —NHC(O)NR10BR10C, —N(O)m10, —NR10BR10C, —C(O)R10D, —C(O)OR10D, —C(O)NR10BR10C, —OR10A, —NR10BSO2R10A, —NR10BC(O)R10D, —NR10BC(O)OR10D, —NR10BOR10D, —OCX10,13, —OCHX10,12 (e.g. hydrogen, halogen, —CF3, —CCl3, —CBr3, —CI3, —CN, —OH, —NH2, —COOH, —CONH2, —NO2, —SH, —SO3H, —SO4H, —SO2NH2, —NHNH2, —ONH2, —NHC(O)NHNH2, —NHC(O)NH2, —NHSO2H, —NHC(O)H, —NHC(O)OH, —NHOH, —OCF3, —OCCl3, —OCBr3, —OCI3, —OCHF2, —OCHCl2, —OCHBr2, —OCHI2), R10E-substituted or unsubstituted C1-C6 alkyl, R10E-substituted or unsubstituted 2 to 6 membered heteroalkyl, R10E-substituted or unsubstituted C3-C6 cycloalkyl, R10E-substituted or unsubstituted 3 to 6 membered heterocycloalkyl, R10E-substituted or unsubstituted phenyl, or R10E-substituted or unsubstituted 5 to 6 membered heteroaryl.


In embodiments, R10 is independently hydrogen, halogen, —CX10,13, —CHX10,12, —CH2X10,1, —CN, —SOn10R10A, —SOv10NR10BR10C, —NHNR10BR10C, —ONR10BR10C, —NHC(O)NHNR10BR10C, —NHC(O)NR10BR10C, —N(O)m10, —C(O)R10D, —C(O)OR10D, —C(O)NR10BR10C, —OR10A, —NR10BSO2R10A, —NR10BC(O)R10D, —NR10BC(O)OR10D, —NR10BOR10D, —OCX10,13, —OCHX10,12 (e.g. hydrogen, halogen, —CF3, —CCl3, —CBr3, —CI3, —CN, —OH, —COOH, —CONH2, —NO2, —SH, —SO3H, —SO4H, —SO2NH2, —NHNH2, —ONH2, —NHC(O)NHNH2, —NHC(O)NH2, —NHSO2H, —NHC(O)H, —NHC(O)OH, —NHOH, —OCF3, —OCCl3, —OCBr3, —OCI3, —OCHF2, —OCHCl2, —OCHBr2, —OCHI2), R10E-substituted or unsubstituted alkyl, R10E-substituted or unsubstituted heteroalkyl, R10E-substituted or unsubstituted cycloalkyl, or R10E-substituted or unsubstituted aryl. In embodiments, R10 is independently hydrogen, halogen, —CX10,13, —CHX10,12, —CH2X10,1, —CN, —SOn10R10A, —SOv10NR10BR10C, —NHNR10BR10C, —ONR10BR10C, —NHC(O)NHNR10BR10C, —NHC(O)NR10BR10C, —N(O)m10, —C(O)R10D, —C(O)OR10D, —C(O)NR10BR10C, —OR10A, —NR10BSO2R10A, —NR10BC(O)R10D, —NR10BC(O)OR10D, —NR10BOR10D, —OCX10,13, —OCHX10,12 (e.g. hydrogen, halogen, —CF3, —CCl3, —CBr3, —CI3, —CN, —OH, —COOH, —CONH2, —NO2, —SH, —SO3H, —SO4H, —SO2NH2, —NHNH2, —ONH2, —NHC(O)NHNH2, —NHC(O)NH2, —NHSO2H, —NHC(O)H, —NHC(O)OH, —NHOH, —OCF3, —OCCl3, —OCBr3, —OCI3, —OCHF2, —OCHCl2, —OCHBr2, —OCHI2), R10E-substituted or unsubstituted C1-C6 alkyl, R10E-substituted or unsubstituted 2 to 6 membered heteroalkyl, R10E-substituted or unsubstituted C3-C6 cycloalkyl, or R10E-substituted or unsubstituted phenyl.


R10E is independently oxo, halogen, —CF3, —CCl3, —CBr3, —CI3, —CN, —OH, —NH2, —COOH, —CONH2, —NO2, —SH, —SO3H, —SO4H, —SO2NH2, —NHNH2, —ONH2, —NHC(O)NHNH2, —NHC(O)NH2, —NHSO2H, —NHC(O)H, —NHC(O)OH, —NHOH, —OCF3, —OCCl3, —OCBr3, —OCI3, —OCHF2, —OCHCl2, —OCHBr2, —OCHI2, R10F-substituted or unsubstituted alkyl, R10F-substituted or unsubstituted heteroalkyl, R10F-substituted or unsubstituted cycloalkyl, R10F-substituted or unsubstituted heterocycloalkyl, R10F-substituted or unsubstituted aryl, or R10F-substituted or unsubstituted heteroaryl. In embodiments, R10E is independently oxo, halogen, —CF3, —CCl3, —CBr3, —CI3, —CN, —OH, —NH2, —COOH, —CONH2, —NO2, —SH, —SO3H, —SO4H, —SO2NH2, —NHNH2, —ONH2, —NHC(O)NHNH2, —NHC(O)NH2, —NHSO2H, —NHC(O)H, —NHC(O)OH, —NHOH, —OCF3, —OCCl3, —OCBr3, —OCI3, —OCHF2, —OCHCl2, —OCHBr2, —OCHI2, R10F-substituted or unsubstituted C1-C6 alkyl, R10F-substituted or unsubstituted 2 to 6 membered heteroalkyl, R10F-substituted or unsubstituted C3-C6 cycloalkyl, R10F-substituted or unsubstituted 3 to 6 membered heterocycloalkyl, R10F-substituted or unsubstituted phenyl, or R10F-substituted or unsubstituted 5 to 6 membered heteroaryl.


In embodiments, R11 is independently hydrogen, halogen, —CX11,13, —CHX11,12, —CH2X11,1, —CN, —SOn11R11A, —SOv11NR11BR11C, —NHNR11BR11C, —ONR11BR11C, —NHC(O)NHNR11BR11C, —NHC(O)NR11BR11C, —N(O)m11, —NR11BR11C, —C(O)R11D, —C(O)OR11D, —C(O)NR11BR11C, —OR11A, —NR11BSO2R11A, —NR11BC(O)R11D, —NR11BC(O)OR11D, —NR11BOR11D, —OCX11,13, —OCHX11,12 (e.g. hydrogen, halogen, —CF3, —CCl3, —CBr3, —CI3, —CN, —OH, —NH2, —COOH, —CONH2, —NO2, —SH, —SO3H, —SO4H, —SO2NH2, —NHNH2, —ONH2, —NHC(O)NHNH2, —NHC(O)NH2, —NHSO2H, —NHC(O)H, —NHC(O)OH, —NHOH, —OCF3, —OCCl3, —OCBr3, —OCI3, —OCHF2, —OCHCl2, —OCHBr2, —OCHI2), R11E-substituted or unsubstituted alkyl, R11E-substituted or unsubstituted heteroalkyl, R11E-substituted or unsubstituted cycloalkyl, R11E-substituted or unsubstituted heterocycloalkyl, R11E-substituted or unsubstituted aryl, or R11E-substituted or unsubstituted heteroaryl. In embodiments, R11 is independently hydrogen, halogen, —CX11,13, —CHX11,12, —CH2X11,1, —CN, —SOn11R11A, —SOv11NR11BR11C, —NHNR11BR11C, —ONR11BR11C, —NHC(O)NHNR11BR11C, —NHC(O)NR11BR11C, —N(O)m11, —NR11BR11C, —C(O)R11D, —C(O)OR11D, —C(O)NR11BR11C, —OR11A, —NR11BSO2R11A, —NR11BC(O)R11D, —NR11BC(O)OR11D, —NR11BOR11D, —OCX11,13, —OCHX11,12 (e.g. hydrogen, halogen, —CF3, —CCl3, —CBr3, —CI3, —CN, —OH, —NH2, —COOH, —CONH2, —NO2, —SH, —SO3H, —SO4H, —SO2NH2, —NHNH2, —ONH2, —NHC(O)NHNH2, —NHC(O)NH2, —NHSO2H, —NHC(O)H, —NHC(O)OH, —NHOH, —OCF3, —OCCl3, —OCBr3, —OCI3, —OCHF2, —OCHCl2, —OCHBr2, —OCHI2), R11E-substituted or unsubstituted C1-C6 alkyl, R11E-substituted or unsubstituted 2 to 6 membered heteroalkyl, R11E-substituted or unsubstituted C3-C6 cycloalkyl, R11E-substituted or unsubstituted 3 to 6 membered heterocycloalkyl, R11E-substituted or unsubstituted phenyl, or R11E-substituted or unsubstituted 5 to 6 membered heteroaryl.


In embodiments, R11 is independently hydrogen, halogen, —CX11,13, —CHX11,12, —CH2X11,1, —CN, —SOn11R11A, —SOv11NR11BR11C, —NHNR11BR11C, —ONR11BR11C, —NHC(O)NHNR11BR11C, —NHC(O)NR11BR11C, —N(O)m11, —C(O)R11D, —C(O)OR11D, —C(O)NR11BR11C, —OR11A, —NR11BSO2R11A, —NR11BC(O)R11D, —NR11BC(O)OR11D, —NR11BOR11D, —OCX11,13, —OCHX11,12 (e.g. hydrogen, halogen, —CF3, —CCl3, —CBr3, —CI3, —CN, —OH, —COOH, —CONH2, —NO2, —SH, —SO3H, —SO4H, —SO2NH2, —NHNH2, —ONH2, —NHC(O)NHNH2, —NHC(O)NH2, —NHSO2H, —NHC(O)H, —NHC(O)OH, —NHOH, —OCF3, —OCCl3, —OCBr3, —OCI3, —OCHF2, —OCHCl2, —OCHBr2, —OCHI2), R11E-substituted or unsubstituted alkyl, R11E-substituted or unsubstituted heteroalkyl, R11E-substituted or unsubstituted cycloalkyl, or R11E-substituted or unsubstituted aryl. In embodiments, R11 is independently hydrogen, halogen, —CX11,13, —CHX11,12, —CH2X11,1, —CN, —SOn11R11A, —SOv11NR11BR11C, —NHNR11BR11C, —ONR11BR11C, —NHC(O)NHNR11BR11C, —NHC(O)NR11BR11C, —N(O)m11, —C(O)R11D, —C(O)OR11D, —C(O)NR11BR11C, —OR11A, —NR11BSO2R11A, —NR11BC(O)R11D, —NR11BC(O)OR11D, —NR11BOR11D, —OCX11,13, —OCHX11,12 (e.g. hydrogen, halogen, —CF3, —CCl3, —CBr3, —CI3, —CN, —OH, —COOH, —CONH2, —NO2, —SH, —SO3H, —SO4H, —SO2NH2, —NHNH2, —ONH2, —NHC(O)NHNH2, —NHC(O)NH2, —NHSO2H, —NHC(O)H, —NHC(O)OH, —NHOH, —OCF3, —OCCl3, —OCBr3, —OCI3, —OCHF2, —OCHCl2, —OCHBr2, —OCHI2), R11E-substituted or unsubstituted C1-C6 alkyl, R11E-substituted or unsubstituted 2 to 6 membered heteroalkyl, R11E-substituted or unsubstituted C3-C6 cycloalkyl, or R11E-substituted or unsubstituted phenyl.


R11E is independently oxo, halogen, —CF3, —CCl3, —CBr3, —CI3, —CN, —OH, —NH2, —COOH, —CONH2, —NO2, —SH, —SO3H, —SO4H, —SO2NH2, —NHNH2, —ONH2, —NHC(O)NHNH2, —NHC(O)NH2, —NHSO2H, —NHC(O)H, —NHC(O)OH, —NHOH, —OCF3, —OCCl3, —OCBr3, —OCI3, —OCHF2, —OCHCl2, —OCHBr2, —OCHI2, R11F-substituted or unsubstituted alkyl, R11F-substituted or unsubstituted heteroalkyl, R11F-substituted or unsubstituted cycloalkyl, R11F-substituted or unsubstituted heterocycloalkyl, R11F-substituted or unsubstituted aryl, or R11F-substituted or unsubstituted heteroaryl. In embodiments, R11E is independently oxo, halogen, —CF3, —CCl3, —CBr3, —CI3, —CN, —OH, —NH2, —COOH, —CONH2, —NO2, —SH, —SO3H, —SO4H, —SO2NH2, —NHNH2, —ONH2, —NHC(O)NHNH2, —NHC(O)NH2, —NHSO2H, —NHC(O)H, —NHC(O)OH, —NHOH, —OCF3, —OCCl3, —OCBr3, —OCI3, —OCHF2, —OCHCl2, —OCHBr2, —OCHI2, R11F-substituted or unsubstituted C1-C6 alkyl, R11F-substituted or unsubstituted 2 to 6 membered heteroalkyl, R11F-substituted or unsubstituted C3-C6 cycloalkyl, R11F-substituted or unsubstituted 3 to 6 membered heterocycloalkyl, R11F-substituted or unsubstituted phenyl, or R11F-substituted or unsubstituted 5 to 6 membered heteroaryl.


In embodiments, R12 is independently hydrogen, halogen, —CX12,13, —CHX12,12, —CH2X12,1, —CN, —SOn12R12A, —SOv12NR12BR12C, —NHNR12BR12C, —ONR12BR12C, —NHC(O)NHNR12BR12C, —NHC(O)NR12BR12C, —N(O)m12, —NR12BR12C, —C(O)R12D, —C(O)OR12D, —C(O)NR12BR12C, —OR12A, —NR12BSO2R12A, —NR12BC(O)R12D, —NR12BC(O)OR12D, —NR12BOR12D, —OCX12,13, —OCHX12,12 (e.g. hydrogen, halogen, —CF3, —CCl3, —CBr3, —CI3, —CN, —OH, —NH2, —COOH, —CONH2, —NO2, —SH, —SO3H, —SO4H, —SO2NH2, —NHNH2, —ONH2, —NHC(O)NHNH2, —NHC(O)NH2, —NHSO2H, —NHC(O)H, —NHC(O)OH, —NHOH, —OCF3, —OCCl3, —OCBr3, —OCI3, —OCHF2, —OCHCl2, —OCHBr2, —OCHI2), R12E-substituted or unsubstituted alkyl, R12E-substituted or unsubstituted heteroalkyl, R12E-substituted or unsubstituted cycloalkyl, R12E-substituted or unsubstituted heterocycloalkyl, R12E-substituted or unsubstituted aryl, or R12E-substituted or unsubstituted heteroaryl. In embodiments, R12 is independently hydrogen, halogen, —CX12,13, —CHX12,12,—CH2X12,1, —CN, —SOn12R12A, —SOv12NR12BR12C, —NHNR12BR12C, —ONR12BR12C, —NHC(O)NHNR12BR12C, —NHC(O)NR12BR12C, —N(O)m12, —NR12BR12C, —C(O)R12D, —C(O)OR12D, —C(O)NR12BR12C, —OR12A, —NR12BSO2R12A, —NR12BC(O)R12D, —NR12BC(O)OR12D, —NR12BOR12D, —OCX12,13, —OCHX12,12 (e.g. hydrogen, halogen, —CF3, —CCl3, —CBr3, —CI3, —CN, —OH, —NH2, —COOH, —CONH2, —NO2, —SH, —SO3H, —SO4H, —SO2NH2, —NHNH2, —ONH2, —NHC(O)NHNH2, —NHC(O)NH2, —NHSO2H, —NHC(O)H, —NHC(O)OH, —NHOH, —OCF3, —OCCl3, —OCBr3, —OCI3, —OCHF2, —OCHCl2, —OCHBr2, —OCHI2), R12E-substituted or unsubstituted C1-C6 alkyl, R12E-substituted or unsubstituted 2 to 6 membered heteroalkyl, R12E-substituted or unsubstituted C3-C6 cycloalkyl, R12E-substituted or unsubstituted 3 to 6 membered heterocycloalkyl, R12E-substituted or unsubstituted phenyl, or R12E-substituted or unsubstituted 5 to 6 membered heteroaryl.


In embodiments, R12 is independently hydrogen, halogen, —CX12,13, —CHX12,12, —CH2X12,1, —CN, —SOn12R12A, —SOv12NR12BR12C, —NHNR12BR12C, —ONR12BR12C, —NHC(O)NHNR12BR12C, —NHC(O)NR12BR12C, —N(O)m12, —C(O)R12D, —C(O)OR12D, —C(O)NR12BR12C, —OR12A, —NR12BSO2R12A, —NR12BC(O)R12D, —NR12BC(O)OR12D, —NR12BOR12D, —OCX12,13, —OCHX12,12 (e.g. hydrogen, halogen, —CF3, —CCl3, —CBr3, —CI3, —CN, —OH, —COOH, —CONH2, —NO2, —SH, —SO3H, —SO4H, —SO2NH2, —NHNH2, —ONH2, —NHC(O)NHNH2, —NHC(O)NH2, —NHSO2H, —NHC(O)H, —NHC(O)OH, —NHOH, —OCF3, —OCCl3, —OCBr3, —OCI3, —OCHF2, —OCHCl2, —OCHBr2, —OCHI2), R12E-substituted or unsubstituted alkyl, R12E-substituted or unsubstituted heteroalkyl, R12E-substituted or unsubstituted cycloalkyl or R12E-substituted or unsubstituted aryl. In embodiments, R12 is independently hydrogen, halogen, —CX12,13, —CHX12,12, —CH2X12,1, —CN, —SOn12R12A, —SOv12NR12BR12C, —NHNR12BR12C, —ONR12BR12C, —NHC(O)NHNR12BR12C, —NHC(O)NR12BR12C, —N(O)m12, —C(O)R12D, —C(O)OR12D, —C(O)NR12BR12C, —OR12A, —NR12BSO2R12A, —NR12BC(O)R12D, —NR12BC(O)OR12D, —NR12BOR12D, —OCX12,13, —OCHX12,12 (e.g. hydrogen, halogen, —CF3, —CCl3, —CBr3, —CI3, —CN, —OH, —COOH, —CONH2, —NO2, —SH, —SO3H, —SO4H, —SO2NH2, —NHNH2, —ONH2, —NHC(O)NHNH2, —NHC(O)NH2, —NHSO2H, —NHC(O)H, —NHC(O)OH, —NHOH, —OCF3, —OCCl3, —OCBr3, —OCI3, —OCHF2, —OCHCl2, —OCHBr2, —OCHI2), R12E-substituted or unsubstituted C1-C6 alkyl, R12E-substituted or unsubstituted 2 to 6 membered heteroalkyl, R12E-substituted or unsubstituted C3-C6 cycloalkyl or R12E-substituted or unsubstituted phenyl.


R12E is independently oxo, halogen, —CF3, —CCl3, —CBr3, —CI3, —CN, —OH, —NH2, —COOH, —CONH2, —NO2, —SH, —SO3H, —SO4H, —SO2NH2, —NHNH2, —ONH2, —NHC(O)NHNH2, —NHC(O)NH2, —NHSO2H, —NHC(O)H, —NHC(O)OH, —NHOH, —OCF3, —OCCl3, —OCBr3, —OCI3, —OCHF2, —OCHCl2, —OCHBr2, —OCHI2, R12F-substituted or unsubstituted alkyl, R12F-substituted or unsubstituted heteroalkyl, R12F-substituted or unsubstituted cycloalkyl, R12F-substituted or unsubstituted heterocycloalkyl, R12F-substituted or unsubstituted aryl, or R12F-substituted or unsubstituted heteroaryl. In embodiments, R12E is independently oxo, halogen, —CF3, —CCl3, —CBr3, —CI3, —CN, —OH, —NH2, —COOH, —CONH2, —NO2, —SH, —SO3H, —SO4H, —SO2NH2, —NHNH2, —ONH2, —NHC(O)NHNH2, —NHC(O)NH2, —NHSO2H, —NHC(O)H, —NHC(O)OH, —NHOH, —OCF3, —OCCl3, —OCBr3, —OCI3, —OCHF2, —OCHCl2, —OCHBr2, —OCHI2, R12F-substituted or unsubstituted C1-C6 alkyl, R12F-substituted or unsubstituted 2 to 6 membered heteroalkyl, R12F-substituted or unsubstituted C3-C6 cycloalkyl, R12F-substituted or unsubstituted 3 to 6 membered heterocycloalkyl, R12F-substituted or unsubstituted phenyl, or R12F-substituted or unsubstituted 5 to 6 membered heteroaryl.


In embodiments, R13 is independently hydrogen, halogen, —CX13,13, —CHX13,12, —CH2X13,1, —CN, —SOn13R13A, —SOv13NR13BR13C, —NHNR13BR13C, —ONR13BR13C, —NHC(O)NHNR13BR13C, —NHC(O)NR13BR13C, —N(O)m13, —NR13BR13C, —C(O)R13D, —C(O)OR13D, —C(O)NR13BR13C, —OR13A, —NR13BSO2R13A, —NR13BC(O)R13D, —NR13BC(O)OR13D, —NR13BOR13D, —OCX13,13, —OCHX13,12 (e.g. hydrogen, halogen, —CF3, —CCl3, —CBr3, —CI3, —CN, —OH, —NH2, —COOH, —CONH2, —NO2, —SH, —SO3H, —SO4H, —SO2NH2, —NHNH2, —ONH2, —NHC(O)NHNH2, —NHC(O)NH2, —NHSO2H, —NHC(O)H, —NHC(O)OH, —NHOH, —OCF3, —OCCl3, —OCBr3, —OCI3, —OCHF2, —OCHCl2, —OCHBr2, —OCHI2), R13E-substituted or unsubstituted alkyl, R13E-substituted or unsubstituted heteroalkyl, R13E-substituted or unsubstituted cycloalkyl, R13E-substituted or unsubstituted heterocycloalkyl, R13E-substituted or unsubstituted aryl, or R13E-substituted or unsubstituted heteroaryl. In embodiments, R13 is independently hydrogen, halogen, —CX13,13, —CHX13,12, —CH2X13,1, —CN, —SOn13R13A, —SOv13NR13BR13C, —NHNR13BR13C, —ONR13BR13C, —NHC(O)NHNR13BR13C, —NHC(O)NR13BR13C, —N(O)m13, —NR13BR13C, —C(O)R13D, —C(O)OR13D, —C(O)NR13BR13C, —OR13A, —NR13BSO2R13A, —NR13BC(O)R13D, —NR13BC(O)OR13D, —NR13BOR13D, —OCX13,13, —OCHX13,12 (e.g. hydrogen, halogen, —CF3, —CCl3, —CBr3, —CI3, —CN, —OH, —NH2, —COOH, —CONH2, —NO2, —SH, —SO3H, —SO4H, —SO2NH2, —NHNH2, —ONH2, —NHC(O)NHNH2, —NHC(O)NH2, —NHSO3H, —NHC(O)H, —NHC(O)OH, —NHOH, —OCF3, —OCCl3, —OCBr3, —OCI3, —OCHF2, —OCHCl2, —OCHBr2, —OCHI2), R13E-substituted or unsubstituted C1-C6 alkyl, R13E-substituted or unsubstituted 2 to 6 membered heteroalkyl, R13E-substituted or unsubstituted C3-C6 cycloalkyl, R13E-substituted or unsubstituted 3 to 6 membered heterocycloalkyl, R13E-substituted or unsubstituted phenyl, or R13E-substituted or unsubstituted 5 to 6 membered heteroaryl.


In embodiments, R13 is independently hydrogen, halogen, —CX13,13, —CHX13,12, —CH2X13,1, —CN, —SOn13R13A, —SOv13NR13BR13C, —NHNR13BR13C, —ONR13BR13C, —NHC(O)NHNR13BR13C, —NHC(O)NR13BR13C, —N(O)m13, —C(O)R13D, —C(O)OR13D, —C(O)NR13BR13C, —OR13A, —NR13BSO2R13A, —NR13BC(O)R13D, —NR13BC(O)OR13D, —NR13BOR13D, —OCX13,13, —OCHX13,12 (e.g. hydrogen, halogen, —CF3, —CCl3, —CBr3, —CI3, —CN, —OH, —COOH, —CONH2, —NO2, —SH, —SO3H, —SO4H, —SO2NH2, —NHNH2, —ONH2, —NHC(O)NHNH2, —NHC(O)NH2, —NHSO2H, —NHC(O)H, —NHC(O)OH, —NHOH, —OCF3, —OCCl3, —OCBr3, —OCI3, —OCHF2, —OCHCl2, —OCHBr2, —OCHI2), R13E-substituted or unsubstituted alkyl, R13E-substituted or unsubstituted heteroalkyl, R13E-substituted or unsubstituted cycloalkyl or R13E-substituted or unsubstituted aryl. In embodiments, R13 is independently hydrogen, halogen, —CX13,13, —CHX13,12, —CH2X13,1, —CN, —SOn13R13A, —SOv13NR13BR13C, —NHNR13BR13C, —ONR13BR13C, —NHC(O)NHNR13BR13C, —NHC(O)NR13BR13C, —N(O)m13, —C(O)R13D, —C(O)OR13D, —C(O)NR13BR13C, —OR13A, —NR13BSO2R13A, —NR13BC(O)R13D, —NR13BC(O)OR13D, —NR13BOR13D, —OCX13,13, —OCHX13,12 (e.g. hydrogen, halogen, —CF3, —CCl3, —CBr3, —CI3, —CN, —OH, —COOH, —CONH2, —NO2, —SH, —SO3H, —SO4H, —SO2NH2, —NHNH2, —ONH2, —NHC(O)NHNH2, —NHC(O)NH2, —NHSO2H, —NHC(O)H, —NHC(O)OH, —NHOH, —OCF3, —OCCl3, —OCBr3, —OCI3, —OCHF2, —OCHCl2, —OCHBr2, —OCHI2), R13E-substituted or unsubstituted C1-C6 alkyl, R13E-substituted or unsubstituted 2 to 6 membered heteroalkyl, R13E-substituted or unsubstituted C3-C6 cycloalkyl, or R13E-substituted or unsubstituted phenyl.


R13E is independently oxo, halogen, —CF3, —CCl3, —CBr3, —CI3, —CN, —OH, —NH2, —COOH, —CONH2, —NO2, —SH, —SO3H, —SO4H, —SO2NH2, —NHNH2, —ONH2, —NHC(O)NHNH2, —NHC(O)NH2, —NHSO2H, —NHC(O)H, —NHC(O)OH, —NHOH, —OCF3, —OCCl3, —OCBr3, —OCI3, —OCHF2, —OCHCl2, —OCHBr2, —OCHI2, R13F-substituted or unsubstituted alkyl, R13F-substituted or unsubstituted heteroalkyl, R13F-substituted or unsubstituted cycloalkyl, R13F-substituted or unsubstituted heterocycloalkyl, R13F-substituted or unsubstituted aryl, or R13F-substituted or unsubstituted heteroaryl. In embodiments, R13E is independently oxo, halogen, —CF3, —CCl3, —CBr3, —CI3, —CN, —OH, —NH2, —COOH, —CONH2, —NO2, —SH, —SO3H, —SO4H, —SO2NH2, —NHNH2, —ONH2, —NHC(O)NHNH2, —NHC(O)NH2, —NHSO2H, —NHC(O)H, —NHC(O)OH, —NHOH, —OCF3, —OCCl3, —OCBr3, —OCI3, —OCHF2, —OCHCl2, —OCHBr2, —OCHI2, R13F-substituted or unsubstituted C1-C6 alkyl, R13F-substituted or unsubstituted 2 to 6 membered heteroalkyl, R13F-substituted or unsubstituted C3-C6 cycloalkyl, R13F-substituted or unsubstituted 3 to 6 membered heterocycloalkyl, R13F-substituted or unsubstituted phenyl, or R13F-substituted or unsubstituted 5 to 6 membered heteroaryl.


In embodiments, R14 is independently hydrogen, halogen, —CX14,13, —CHX14,12, —CH2X14,1, —CN, —SOn14R14A, —SOv14NR14BR14C, —NHNR14BR14C, —ONR14BR14C, —NHC(O)NHNR14BR14C, —NHC(O)NR14BR14C, —N(O)m14, —NR14BR14C, —C(O)R14D, —C(O)OR14D, —C(O)NR14BR14C, —OR14A, —NR14BSO2R14A, —NR14BC(O)R14D, —NR14BC(O)OR14D, —NR14BOR14D, —OCX14,13, —OCHX14,12 (e.g. hydrogen, halogen, —CF3, —CCl3, —CBr3, —CI3, —CN, —OH, —NH2, —COOH, —CONH2, —NO2, —SH, —SO3H, —SO4H, —SO2NH2, —NHNH2, —ONH2, —NHC(O)NHNH2, —NHC(O)NH2, —NHSO2H, —NHC(O)H, —NHC(O)OH, —NHOH, —OCF3, —OCCl3, —OCBr3, —OCI3, —OCHF2, —OCHCl2, —OCHBr2, —OCHI2), R14E-substituted or unsubstituted alkyl, R14E-substituted or unsubstituted heteroalkyl, R14E-substituted or unsubstituted cycloalkyl, R14E-substituted or unsubstituted heterocycloalkyl, R14E-substituted or unsubstituted aryl, or R14E-substituted or unsubstituted heteroaryl. In embodiments, R14 is independently hydrogen, halogen, —CX14,13h, —CHX14,12, —CH2X14,1, —CN, —SOn14R14A, —SOv14NR14BR14C, —NHNR14BR14C, —ONR14BR14C, —NHC(O)NHNR14BR14C, —NHC(O)NR14BR14C, —N(O)m14, —NR14BR14C, —C(O)R14D, —C(O)OR14D, —C(O)NR14BR14C, —OR14A, —NR14BSO2R14A, —NR14BC(O)R14D, —NR14BC(O)OR14D, —NR14BOR14D, —OCX14,13, —OCHX14,12 (e.g. hydrogen, halogen, —CF3, —CCl3, —CBr3, —CI3, —CN, —OH, —NH2, —COOH, —CONH2, —NO2, —SH, —SO3H, —SO4H, —SO2NH2, —NHNH2, —ONH2, —NHC(O)NHNH2, —NHC(O)NH2, —NHSO2H, —NHC(O)H, —NHC(O)OH, —NHOH, —OCF3, —OCCl3, —OCBr3, —OCI3, —OCHF2, —OCHCl2, —OCHBr2, —OCHI2), R14E-substituted or unsubstituted C1-C6 alkyl, R14E-substituted or unsubstituted 2 to 6 membered heteroalkyl, R14E-substituted or unsubstituted C3-C6 cycloalkyl, R14E-substituted or unsubstituted 3 to 6 membered heterocycloalkyl, R14E-substituted or unsubstituted phenyl, or R14E-substituted or unsubstituted 5 to 6 membered heteroaryl.


In embodiments, R14 is independently hydrogen, halogen, —CX14,13, —CHX14,12, —CH2X14,1, —CN, —SOn14R14A, —SOv14NR14BR14C, —NHNR14BR14C, —ONR14BR14C, —NHC(O)NHNR14BR14C, —NHC(O)NR14BR14C, —N(O)m14, —C(O)R14D, —C(O)OR14D, —C(O)NR14BR14C, —OR14A, —NR14BSO2R14A, —NR14BC(O)R14D, —NR14BC(O)OR14D, —NR14BOR14D, —OCX14,13, —OCHX14,12 (e.g. hydrogen, halogen, —CF3, —CCl3, —CBr3, —CI3, —CN, —OH, —COOH, —CONH2, —NO2, —SH, —SO3H, —SO4H, —SO2NH2, —NHNH2, —ONH2, —NHC(O)NHNH2, —NHC(O)NH2, —NHSO2H, —NHC(O)H, —NHC(O)OH, —NHOH, —OCF3, —OCCl3, —OCBr3, —OCI3, —OCHF2, —OCHCl2, —OCHBr2, —OCHI2), R14E-substituted or unsubstituted alkyl, R14E-substituted or unsubstituted heteroalkyl, R14E-substituted or unsubstituted cycloalkyl or R14E-substituted or unsubstituted aryl. In embodiments, R14 is independently hydrogen, halogen, —CX14,13, —CHX14,12, —CH2X14,1, —CN, —SOn14R14A, —SOv14NR14BR14C, —NHNR14BR14C, —ONR14BR14C, —NHC(O)NHNR14BR14C, —NHC(O)NR14BR14C, —N(O)m14, —C(O)R14D, —C(O)OR14D, —C(O)NR14BR14C, —OR14A, —NR14BSO2R14A, —NR14BC(O)R14D, —NR14BC(O)OR14D, —NR14BOR14D, —OCX14,13, —OCHX14,12 (e.g. hydrogen, halogen, —CF3, —CCl3, —CBr3, —CI3, —CN, —OH, —COOH, —CONH2, —NO2, —SH, —SO3H, —SO4H, —SO2NH2, —NHNH2, —ONH2, —NHC(O)NHNH2, —NHC(O)NH2, —NHSO2H, —NHC(O)H, —NHC(O)OH, —NHOH, —OCF3, —OCCl3, —OCBr3, —OCI3, —OCHF2, —OCHCl2, —OCHBr2, —OCHI2), R14E-substituted or unsubstituted C1-C6 alkyl, R14E-substituted or unsubstituted 2 to 6 membered heteroalkyl, R14E-substituted or unsubstituted C3-C6 cycloalkyl, or R14E-substituted or unsubstituted phenyl.


R14E is independently oxo, halogen, —CF3, —CCl3, —CBr3, —CI3, —CN, —OH, —NH2, —COOH, —CONH2, —NO2, —SH, —SO3H, —SO4H, —SO2NH2, —NHNH2, —ONH2, —NHC(O)NHNH2, —NHC(O)NH2, —NHSO2H, —NHC(O)H, —NHC(O)OH, —NHOH, —OCF3, —OCCl3, —OCBr3, —OCI3, —OCHF2, —OCHCl2, —OCHBr2, —OCHI2, R14F-substituted or unsubstituted alkyl, R14F-substituted or unsubstituted heteroalkyl, R14F-substituted or unsubstituted cycloalkyl, R14F-substituted or unsubstituted heterocycloalkyl, R14F-substituted or unsubstituted aryl, or R14F-substituted or unsubstituted heteroaryl. In embodiments, R14E is independently oxo, halogen, —CF3, —CCl3, —CBr3, —CI3, —CN, —OH, —NH2, —COOH, —CONH2, —NO2, —SH, —SO3H, —SO4H, —SO2NH2, —NHNH2, —ONH2, —NHC(O)NHNH2, —NHC(O)NH2, —NHSO2H, —NHC(O)H, —NHC(O)OH, —NHOH, —OCF3, —OCCl3, —OCBr3, —OCI3, —OCHF2, —OCHCl2, —OCHBr2, —OCHI2, R14F-substituted or unsubstituted C1-C6 alkyl, R14F-substituted or unsubstituted 2 to 6 membered heteroalkyl, R14F-substituted or unsubstituted C3-C6 cycloalkyl, R14F-substituted or unsubstituted 3 to 6 membered heterocycloalkyl, R14F-substituted or unsubstituted phenyl, or R14F-substituted or unsubstituted 5 to 6 membered heteroaryl.


In embodiments, R15 is independently hydrogen, R15E-substituted or unsubstituted alkyl, R15E-substituted or unsubstituted heteroalkyl, R15E-substituted or unsubstituted cycloalkyl, R15E-substituted or unsubstituted heterocycloalkyl, R15E-substituted or unsubstituted aryl, or R15E-substituted or unsubstituted heteroaryl. In embodiments, R15 is independently hydrogen, R15E-substituted or unsubstituted C1-C6 alkyl, R15E-substituted or unsubstituted 2 to 6 membered heteroalkyl, R15E-substituted or unsubstituted C3-C6 cycloalkyl, R15E-substituted or unsubstituted 3 to 6 membered heterocycloalkyl, R15E-substituted or unsubstituted phenyl, or R15E-substituted or unsubstituted 5 to 6 membered heteroaryl.


R15E is independently oxo, halogen, —CF3, —CCl3, —CBr3, —CI3, —CN, —OH, —NH2, —COOH, —CONH2, —NO2, —SH, —SO3H, —SO4H, —SO2NH2, —NHNH2, —ONH2, —NHC(O)NHNH2, —NHC(O)NH2, —NHSO2H, —NHC(O)H, —NHC(O)OH, —NHOH, —OCF3, —OCCl3, —OCBr3, —OCI3, —OCHF2, —OCHCl2, —OCHBr2, —OCHI2, R15F-substituted or unsubstituted alkyl, R15F-substituted or unsubstituted heteroalkyl, R15F-substituted or unsubstituted cycloalkyl, R15F-substituted or unsubstituted heterocycloalkyl, R15F-substituted or unsubstituted aryl, or R15F-substituted or unsubstituted heteroaryl. In embodiments, R15E is independently oxo, halogen, —CF3, —CCl3, —CBr3, —CI3, —CN, —OH, —NH2, —COOH, —CONH2, —NO2, —SH, —SO3H, —SO4H, —SO2NH2, —NHNH2, —ONH2, —NHC(O)NHNH2, —NHC(O)NH2, —NHSO2H, —NHC(O)H, —NHC(O)OH, —NHOH, —OCF3, —OCCl3, —OCBr3, —OCI3, —OCHF2, —OCHCl2, —OCHBr2, —OCHI2, R15F-substituted or unsubstituted C1-C6 alkyl, R15F-substituted or unsubstituted 2 to 6 membered heteroalkyl, R15F-substituted or unsubstituted C3-C6 cycloalkyl, R15F-substituted or unsubstituted 3 to 6 membered heterocycloalkyl, R15F-substituted or unsubstituted phenyl, or R15F-substituted or unsubstituted 5 to 6 membered heteroaryl.


In embodiments, R1A is independently hydrogen, halogen, —CF3, —CCl3, —CBr3, —CI3, —CN, —OH, —NH2, —COOH, —CONH2, —NO2, —SH, —SO3H, —SO4H, —SO2NH2, —NHNH2, —ONH2, —NHC(O)NHNH2, —NHC(O)NH2, —NHSO2H, —NHC(O)H, —NHC(O)OH, —NHOH, —OCF3, —OCCl3, —OCBr3, —OCI3, —OCHF2, —OCHCl2, —OCHBr2, —OCHI2, R1AF-substituted or unsubstituted alkyl, R1AF-substituted or unsubstituted heteroalkyl, R1AF-substituted or unsubstituted cycloalkyl, R1AF-substituted or unsubstituted heterocycloalkyl, R1AF-substituted or unsubstituted aryl, or R1AF-substituted or unsubstituted heteroaryl. In embodiments, R1A is independently hydrogen, halogen, —CF3, —CCl3, —CBr3, —CI3, —CN, —OH, —NH2, —COOH, —CONH2, —NO2, —SH, —SO3H, —SO4H, —SO2NH2, —NHNH2, —ONH2, —NHC(O)NHNH2, —NHC(O)NH2, —NHSO2H, —NHC(O)H, —NHC(O)OH, —NHOH, —OCF3, —OCCl3, —OCBr3, —OCI3, —OCHF2, —OCHCl2, —OCHBr2, —OCHI2, R1AF-substituted or unsubstituted C1-C6 alkyl, R1AF-substituted or unsubstituted 2 to 6 membered heteroalkyl, R1AF-substituted or unsubstituted C3-C6 cycloalkyl, R1AF-substituted or unsubstituted 3 to 6 membered heterocycloalkyl, R1AF-substituted or unsubstituted phenyl, or R1AF-substituted or unsubstituted 5 to 6 membered heteroaryl.


In embodiments, R1B is independently hydrogen, halogen, —CF3, —CCl3, —CBr3, —CI3, —CN, —OH, —NH2, —COOH, —CONH2, —NO2, —SH, —SO3H, —SO4H, —SO2NH2, —NHNH2, —ONH2, —NHC(O)NHNH2, —NHC(O)NH2, —NHSO2H, —NHC(O)H, —NHC(O)OH, —NHOH, —OCF3, —OCCl3, —OCBr3, —OCI3, —OCHF2, —OCHCl2, —OCHBr2, —OCHI2, R1BF-substituted or unsubstituted alkyl, R1BF-substituted or unsubstituted heteroalkyl, R1BF-substituted or unsubstituted cycloalkyl, R1BF-substituted or unsubstituted heterocycloalkyl, R1BF-substituted or unsubstituted aryl, or R1BF-substituted or unsubstituted heteroaryl. In embodiments, R1B is independently hydrogen, halogen, —CF3, —CCl3, —CBr3, —CI3, —CN, —OH, —NH2, —COOH, —CONH2, —NO2, —SH, —SO3H, —SO4H, —SO2NH2, —NHNH2, —ONH2, —NHC(O)NHNH2, —NHC(O)NH2, —NHSO2H, —NHC(O)H, —NHC(O)OH, —NHOH, —OCF3, —OCCl3, —OCBr3, —OCI3, —OCHF2, —OCHCl2, —OCHBr2, —OCHI2, R1BF-substituted or unsubstituted C1-C6 alkyl, R1BF-substituted or unsubstituted 2 to 6 membered heteroalkyl, R1BF-substituted or unsubstituted C3-C6 cycloalkyl, R1BF-substituted or unsubstituted 3 to 6 membered heterocycloalkyl, R1BF-substituted or unsubstituted phenyl, or R1BF-substituted or unsubstituted 5 to 6 membered heteroaryl.


In embodiments, R1C is independently hydrogen, halogen, —CF3, —CCl3, —CBr3, —CI3, —CN, —OH, —NH2, —COOH, —CONH2, —NO2, —SH, —SO3H, —SO4H, —SO2NH2, —NHNH2, —ONH2, —NHC(O)NHNH2, —NHC(O)NH2, —NHSO2H, —NHC(O)H, —NHC(O)OH, —NHOH, —OCF3, —OCCl3, —OCBr3, —OCI3, —OCHF2, —OCHCl2, —OCHBr2, —OCHI2, R1CF-substituted or unsubstituted alkyl, R1CF-substituted or unsubstituted heteroalkyl, R1CF-substituted or unsubstituted cycloalkyl, R1CF-substituted or unsubstituted heterocycloalkyl, R1CF-substituted or unsubstituted aryl, or R1CF-substituted or unsubstituted heteroaryl. In embodiments, R1C is independently hydrogen, halogen, —CF3, —CCl3, —CBr3, —CI3, —CN, —OH, —NH2, —COOH, —CONH2, —NO2, —SH, —SO3H, —SO4H, —SO2NH2, —NHNH2, —ONH2, —NHC(O)NHNH2, —NHC(O)NH2, —NHSO2H, —NHC(O)H, —NHC(O)OH, —NHOH, —OCF3, —OCCl3, —OCBr3, —OCI3, —OCHF2, —OCHCl2, —OCHBr2, —OCHI2, R1CF-substituted or unsubstituted C1-C6 alkyl, R1CF-substituted or unsubstituted 2 to 6 membered heteroalkyl, R1CF-substituted or unsubstituted C3-C6 cycloalkyl, R1CF-substituted or unsubstituted 3 to 6 membered heterocycloalkyl, R1CF-substituted or unsubstituted phenyl, or R1CF-substituted or unsubstituted 5 to 6 membered heteroaryl. R1B and R1C bonded to the same nitrogen atom may optionally be joined to form a R1CF-substituted or unsubstituted 3 to 6 membered heterocycloalkyl or R1CF-substituted or unsubstituted 5 to 6 membered heteroaryl.


In embodiments, R1D is independently hydrogen, halogen, —CF3, —CCl3, —CBr3, —CI3, —CN, —OH, —NH2, —COOH, —CONH2, —NO2, —SH, —SO3H, —SO4H, —SO2NH2, —NHNH2, —ONH2, —NHC(O)NHNH2, —NHC(O)NH2, —NHSO2H, —NHC(O)H, —NHC(O)OH, —NHOH, —OCF3, —OCCl3, —OCBr3, —OCI3, —OCHF2, —OCHCl2, —OCHBr2, —OCHI2, R1DF-substituted or unsubstituted alkyl, R1DF-substituted or unsubstituted heteroalkyl, R1DF-substituted or unsubstituted cycloalkyl, R1DF-substituted or unsubstituted heterocycloalkyl, R1DF-substituted or unsubstituted aryl, or R1DF-substituted or unsubstituted heteroaryl. In embodiments, R1D is independently hydrogen, halogen, —CF3, —CCl3, —CBr3, —CI3, —CN, —OH, —NH2, —COOH, —CONH2, —NO2, —SH, —SO3H, —SO4H, —SO2NH2, —NHNH2, —ONH2, —NHC(O)NHNH2, —NHC(O)NH2, —NHSO2H, —NHC(O)H, —NHC(O)OH, —NHOH, —OCF3, —OCCl3, —OCBr3, —OCI3, —OCHF2, —OCHCl2, —OCHBr2, —OCHI2, R1DF-substituted or unsubstituted C1-C6 alkyl, R1DF-substituted or unsubstituted 2 to 6 membered heteroalkyl, R1DF-substituted or unsubstituted C3-C6 cycloalkyl, R1DF-substituted or unsubstituted 3 to 6 membered heterocycloalkyl, R1DF-substituted or unsubstituted phenyl, or R1DF-substituted or unsubstituted 5 to 6 membered heteroaryl.


In embodiments, R2A is independently hydrogen, halogen, —CF3, —CCl3, —CBr3, —CI3, —CN, —OH, —NH2, —COOH, —CONH2, —NO2, —SH, —SO3H, —SO4H, —SO2NH2, —NHNH2, —ONH2, —NHC(O)NHNH2, —NHC(O)NH2, —NHSO2H, —NHC(O)H, —NHC(O)OH, —NHOH, —OCF3, —OCCl3, —OCBr3, —OCI3, —OCHF2, —OCHCl2, —OCHBr2, —OCHI2, R2AF-substituted or unsubstituted alkyl, R2AF-substituted or unsubstituted heteroalkyl, R2AF-substituted or unsubstituted cycloalkyl, R2AF-substituted or unsubstituted heterocycloalkyl, R2AF-substituted or unsubstituted aryl, or R2AF-substituted or unsubstituted heteroaryl. In embodiments, R2A is independently hydrogen, halogen, —CF3, —CCl3, —CBr3, —CI3, —CN, —OH, —NH2, —COOH, —CONH2, —NO2, —SH, —SO3H, —SO4H, —SO2NH2, —NHNH2, —ONH2, —NHC(O)NHNH2, —NHC(O)NH2, —NHSO2H, —NHC(O)H, —NHC(O)OH, —NHOH, —OCF3, —OCCl3, —OCBr3, —OCI3, —OCHF2, —OCHCl2, —OCHBr2, —OCHI2, R2AF-substituted or unsubstituted C1-C6 alkyl, R2AF-substituted or unsubstituted 2 to 6 membered heteroalkyl, R2AF-substituted or unsubstituted C3-C6 cycloalkyl, R2AF-substituted or unsubstituted 3 to 6 membered heterocycloalkyl, R2AF-substituted or unsubstituted phenyl, or R2AF-substituted or unsubstituted 5 to 6 membered heteroaryl.


In embodiments, R2B is independently hydrogen, halogen, —CF3, —CCl3, —CBr3, —CI3, —CN, —OH, —NH2, —COOH, —CONH2, —NO2, —SH, —SO3H, —SO4H, —SO2NH2, —NHNH2, —ONH2, —NHC(O)NHNH2, —NHC(O)NH2, —NHSO2H, —NHC(O)H, —NHC(O)OH, —NHOH, —OCF3, —OCCl3, —OCBr3, —OCI3, —OCHF2, —OCHCl2, —OCHBr2, —OCHI2, R2BF-substituted or unsubstituted alkyl, R2BF-substituted or unsubstituted heteroalkyl, R2BF-substituted or unsubstituted cycloalkyl, R2BF-substituted or unsubstituted heterocycloalkyl, R2BF-substituted or unsubstituted aryl, or R2BF-substituted or unsubstituted heteroaryl. In embodiments, R2B is independently hydrogen, halogen, —CF3, —CCl3, —CBr3, —CI3, —CN, —OH, —NH2, —COOH, —CONH2, —NO2, —SH, —SO3H, —SO4H, —SO2NH2, —NHNH2, —ONH2, —NHC(O)NHNH2, —NHC(O)NH2, —NHSO2H, —NHC(O)H, —NHC(O)OH, —NHOH, —OCF3, —OCCl3, —OCBr3, —OCI3, —OCHF2, —OCHCl2, —OCHBr2, —OCHI2, R2BF-substituted or unsubstituted C1-C6 alkyl, R2BF-substituted or unsubstituted 2 to 6 membered heteroalkyl, R2BF-substituted or unsubstituted C3-C6 cycloalkyl, R2BF-substituted or unsubstituted 3 to 6 membered heterocycloalkyl, R2BF-substituted or unsubstituted phenyl, or R2BF-substituted or unsubstituted 5 to 6 membered heteroaryl.


In embodiments, R2C is independently hydrogen, halogen, —CF3, —CCl3, —CBr3, —CI3, —CN, —OH, —NH2, —COOH, —CONH2, —NO2, —SH, —SO3H, —SO4H, —SO2NH2, —NHNH2, —ONH2, —NHC(O)NHNH2, —NHC(O)NH2, —NHSO2H, —NHC(O)H, —NHC(O)OH, —NHOH, —OCF3, —OCCl3, —OCBr3, —OCI3, —OCHF2, —OCHCl2, —OCHBr2, —OCHI2, R2CF-substituted or unsubstituted alkyl, R2CF-substituted or unsubstituted heteroalkyl, R2CF-substituted or unsubstituted cycloalkyl, R2CF-substituted or unsubstituted heterocycloalkyl, R2CF-substituted or unsubstituted aryl, or R2CF-substituted or unsubstituted heteroaryl. In embodiments, R2C is independently hydrogen, halogen, —CF3, —CCl3, —CBr3, —CI3, —CN, —OH, —NH2, —COOH, —CONH2, —NO2, —SH, —SO3H, —SO4H, —SO2NH2, —NHNH2, —ONH2, —NHC(O)NHNH2, —NHC(O)NH2, —NHSO2H, —NHC(O)H, —NHC(O)OH, —NHOH, —OCF3, —OCCl3, —OCBr3, —OCI3, —OCHF2, —OCHCl2, —OCHBr2, —OCHI2, R2CF-substituted or unsubstituted C1-C6 alkyl, R2CF-substituted or unsubstituted 2 to 6 membered heteroalkyl, R2CF-substituted or unsubstituted C3-C6 cycloalkyl, R2CF-substituted or unsubstituted 3 to 6 membered heterocycloalkyl, R2CF-substituted or unsubstituted phenyl, or R2CF-substituted or unsubstituted 5 to 6 membered heteroaryl. R2B and R2C bonded to the same nitrogen atom may optionally be joined to form a R2CF-substituted or unsubstituted 3 to 6 membered heterocycloalkyl or R2CF-substituted or unsubstituted 5 to 6 membered heteroaryl.


In embodiments, R2D is independently hydrogen, halogen, —CF3, —CCl3, —CBr3, —CI3, —CN, —OH, —NH2, —COOH, —CONH2, —NO2, —SH, —SO3H, —SO4H, —SO2NH2, —NHNH2, —ONH2, —NHC(O)NHNH2, —NHC(O)NH2, —NHSO2H, —NHC(O)H, —NHC(O)OH, —NHOH, —OCF3, —OCCl3, —OCBr3, —OCI3, —OCHF2, —OCHCl2, —OCHBr2, —OCHI2, R2DF-substituted or unsubstituted alkyl, R2DF-substituted or unsubstituted heteroalkyl, R2DF-substituted or unsubstituted cycloalkyl, R2DF-substituted or unsubstituted heterocycloalkyl, R2DF-substituted or unsubstituted aryl, or R2DF-substituted or unsubstituted heteroaryl. In embodiments, R2D is independently hydrogen, halogen, —CF3, —CCl3, —CBr3, —CI3, —CN, —OH, —NH2, —COOH, —CONH2, —NO2, —SH, —SO3H, —SO4H, —SO2NH2, —NHNH2, —ONH2, —NHC(O)NHNH2, —NHC(O)NH2, —NHSO2H, —NHC(O)H, —NHC(O)OH, —NHOH, —OCF3, —OCCl3, —OCBr3, —OCI3, —OCHF2, —OCHCl2, —OCHBr2, —OCHI2, R2DF-substituted or unsubstituted C1-C6 alkyl, R2DF-substituted or unsubstituted 2 to 6 membered heteroalkyl, R2DF-substituted or unsubstituted C3-C6 cycloalkyl, R2DF-substituted or unsubstituted 3 to 6 membered heterocycloalkyl, R2DF-substituted or unsubstituted phenyl, or R2DF-substituted or unsubstituted 5 to 6 membered heteroaryl.


In embodiments, R3A is independently hydrogen, halogen, —CF3, —CCl3, —CBr3, —CI3, —CN, —OH, —NH2, —COOH, —CONH2, —NO2, —SH, —SO3H, —SO4H, —SO2NH2, —NHNH2, —ONH2, —NHC(O)NHNH2, —NHC(O)NH2, —NHSO2H, —NHC(O)H, —NHC(O)OH, —NHOH, —OCF3, —OCCl3, —OCBr3, —OCI3, —OCHF2, —OCHCl2, —OCHBr2, —OCHI2, R3AF-substituted or unsubstituted alkyl, R3AF-substituted or unsubstituted heteroalkyl, R3AF-substituted or unsubstituted cycloalkyl, R3AF-substituted or unsubstituted heterocycloalkyl, R3AF-substituted or unsubstituted aryl, or R3AF-substituted or unsubstituted heteroaryl. In embodiments, R3A is independently hydrogen, halogen, —CF3, —CCl3, —CBr3, —CI3, —CN, —OH, —NH2, —COOH, —CONH2, —NO2, —SH, —SO3H, —SO4H, —SO2NH2, —NHNH2, —ONH2, —NHC(O)NHNH2, —NHC(O)NH2, —NHSO2H, —NHC(O)H, —NHC(O)OH, —NHOH, —OCF3, —OCCl3, —OCBr3, —OCI3, —OCHF2, —OCHCl2, —OCHBr2, —OCHI2, R3AF-substituted or unsubstituted C1-C6 alkyl, R3AF-substituted or unsubstituted 2 to 6 membered heteroalkyl, R3AF-substituted or unsubstituted C3-C6 cycloalkyl, R3AF-substituted or unsubstituted 3 to 6 membered heterocycloalkyl, R3AF-substituted or unsubstituted phenyl, or R3AF-substituted or unsubstituted 5 to 6 membered heteroaryl.


In embodiments, R3B is independently hydrogen, halogen, —CF3, —CCl3, —CBr3, —CI3, —CN, —OH, —NH2, —COOH, —CONH2, —NO2, —SH, —SO3H, —SO4H, —SO2NH2, —NHNH2, —ONH2, —NHC(O)NHNH2, —NHC(O)NH2, —NHSO2H, —NHC(O)H, —NHC(O)OH, —NHOH, —OCF3, —OCCl3, —OCBr3, —OCI3, —OCHF2, —OCHCl2, —OCHBr2, —OCHI2, R3BF-substituted or unsubstituted alkyl, R3BF-substituted or unsubstituted heteroalkyl, R3BF-substituted or unsubstituted cycloalkyl, R3BF-substituted or unsubstituted heterocycloalkyl, R3BF-substituted or unsubstituted aryl, or R3BF-substituted or unsubstituted heteroaryl. In embodiments, R3B is independently hydrogen, halogen, —CF3, —CCl3, —CBr3, —CI3, —CN, —OH, —NH2, —COOH, —CONH2, —NO2, —SH, —SO3H, —SO4H, —SO2NH2, —NHNH2, —ONH2, —NHC(O)NHNH2, —NHC(O)NH2, —NHSO2H, —NHC(O)H, —NHC(O)OH, —NHOH, —OCF3, —OCCl3, —OCBr3, —OCI3, —OCHF2, —OCHCl2, —OCHBr2, —OCHI2, R3BF-substituted or unsubstituted C1-C6 alkyl, R3BF-substituted or unsubstituted 2 to 6 membered heteroalkyl, R3BF-substituted or unsubstituted C3-C6 cycloalkyl, R3BF-substituted or unsubstituted 3 to 6 membered heterocycloalkyl, R3BF-substituted or unsubstituted phenyl, or R3BF-substituted or unsubstituted 5 to 6 membered heteroaryl.


In embodiments, R3C is independently hydrogen, halogen, —CF3, —CCl3, —CBr3, —CI3, —CN, —OH, —NH2, —COOH, —CONH2, —NO2, —SH, —SO3H, —SO4H, —SO2NH2, —NHNH2, —ONH2, —NHC(O)NHNH2, —NHC(O)NH2, —NHSO2H, —NHC(O)H, —NHC(O)OH, —NHOH, —OCF3, —OCCl3, —OCBr3, —OCI3, —OCHF2, —OCHCl2, —OCHBr2, —OCHI2, R3CF-substituted or unsubstituted alkyl, R3CF-substituted or unsubstituted heteroalkyl, R3CF-substituted or unsubstituted cycloalkyl, R3CF-substituted or unsubstituted heterocycloalkyl, R3CF-substituted or unsubstituted aryl, or R3CF-substituted or unsubstituted heteroaryl. In embodiments, R3C is independently hydrogen, halogen, —CF3, —CCl3, —CBr3, —CI3, —CN, —OH, —NH2, —COOH, —CONH2, —NO2, —SH, —SO3H, —SO4H, —SO2NH2, —NHNH2, —ONH2, —NHC(O)NHNH2, —NHC(O)NH2, —NHSO2H, —NHC(O)H, —NHC(O)OH, —NHOH, —OCF3, —OCCl3, —OCBr3, —OCI3, —OCHF2, —OCHCl2, —OCHBr2, —OCHI2, R3CF-substituted or unsubstituted C1-C6 alkyl, R3CF-substituted or unsubstituted 2 to 6 membered heteroalkyl, R3CF-substituted or unsubstituted C3-C6 cycloalkyl, R3CF-substituted or unsubstituted 3 to 6 membered heterocycloalkyl, R3CF-substituted or unsubstituted phenyl, or R3CF-substituted or unsubstituted 5 to 6 membered heteroaryl. R3B and R3C bonded to the same nitrogen atom may optionally be joined to form a R3CF-substituted or unsubstituted 3 to 6 membered heterocycloalkyl or R3CF-substituted or unsubstituted 5 to 6 membered heteroaryl.


In embodiments, R3D is independently hydrogen, halogen, —CF3, —CCl3, —CBr3, —CI3, —CN, —OH, —NH2, —COOH, —CONH2, —NO2, —SH, —SO3H, —SO4H, —SO2NH2, —NHNH2, —ONH2, —NHC(O)NHNH2, —NHC(O)NH2, —NHSO2H, —NHC(O)H, —NHC(O)OH, —NHOH, —OCF3, —OCCl3, —OCBr3, —OCI3, —OCHF2, —OCHCl2, —OCHBr2, —OCHI2, R3DF-substituted or unsubstituted alkyl, R3DF-substituted or unsubstituted heteroalkyl, R3DF-substituted or unsubstituted cycloalkyl, R3DF-substituted or unsubstituted heterocycloalkyl, R3DF-substituted or unsubstituted aryl, or R3DF-substituted or unsubstituted heteroaryl. In embodiments, R3D is independently hydrogen, halogen, —CF3, —CCl3, —CBr3, —CI3, —CN, —OH, —NH2, —COOH, —CONH2, —NO2, —SH, —SO3H, —SO4H, —SO2NH2, —NHNH2, —ONH2, —NHC(O)NHNH2, —NHC(O)NH2, —NHSO2H, —NHC(O)H, —NHC(O)OH, —NHOH, —OCF3, —OCCl3, —OCBr3, —OCI3, —OCHF2, —OCHCl2, —OCHBr2, —OCHI2, R3DF-substituted or unsubstituted C1-C6 alkyl, R3DF-substituted or unsubstituted 2 to 6 membered heteroalkyl, R3DF-substituted or unsubstituted C3-C6 cycloalkyl, R3DF-substituted or unsubstituted 3 to 6 membered heterocycloalkyl, R3DF-substituted or unsubstituted phenyl, or R3DF-substituted or unsubstituted 5 to 6 membered heteroaryl.


In embodiments, R4A is independently hydrogen, halogen, —CF3, —CCl3, —CBr3, —CI3, —CN, —OH, —NH2, —COOH, —CONH2, —NO2, —SH, —SO3H, —SO4H, —SO2NH2, —NHNH2, —ONH2, —NHC(O)NHNH2, —NHC(O)NH2, —NHSO2H, —NHC(O)H, —NHC(O)OH, —NHOH, —OCF3, —OCCl3, —OCBr3, —OCI3, —OCHF2, —OCHCl2, —OCHBr2, —OCHI2, R4AF-substituted or unsubstituted alkyl, R4AF-substituted or unsubstituted heteroalkyl, R4AF-substituted or unsubstituted cycloalkyl, R4AF-substituted or unsubstituted heterocycloalkyl, R4AF-substituted or unsubstituted aryl, or R4AF-substituted or unsubstituted heteroaryl. In embodiments, R4A is independently hydrogen, halogen, —CF3, —CCl3, —CBr3, —CI3, —CN, —OH, —NH2, —COOH, —CONH2, —NO2, —SH, —SO3H, —SO4H, —SO2NH2, —NHNH2, —ONH2, —NHC(O)NHNH2, —NHC(O)NH2, —NHSO2H, —NHC(O)H, —NHC(O)OH, —NHOH, —OCF3, —OCCl3, —OCBr3, —OCI3, —OCHF2, —OCHCl2, —OCHBr2, —OCHI2, R4AF-substituted or unsubstituted C1-C6 alkyl, R4AF-substituted or unsubstituted 2 to 6 membered heteroalkyl, R4AF-substituted or unsubstituted C3-C6 cycloalkyl, R4AF-substituted or unsubstituted 3 to 6 membered heterocycloalkyl, R4AF-substituted or unsubstituted phenyl, or R4AF-substituted or unsubstituted 5 to 6 membered heteroaryl.


In embodiments, R4B is independently hydrogen, halogen, —CF3, —CCl3, —CBr3, —CI3, —CN, —OH, —NH2, —COOH, —CONH2, —NO2, —SH, —SO3H, —SO4H, —SO2NH2, —NHNH2, —ONH2, —NHC(O)NHNH2, —NHC(O)NH2, —NHSO2H, —NHC(O)H, —NHC(O)OH, —NHOH, —OCF3, —OCCl3, —OCBr3, —OCI3, —OCHF2, —OCHCl2, —OCHBr2, —OCHI2, R4BF-substituted or unsubstituted alkyl, R4BF-substituted or unsubstituted heteroalkyl, R4BF-substituted or unsubstituted cycloalkyl, R4BF-substituted or unsubstituted heterocycloalkyl, R4BF-substituted or unsubstituted aryl, or R4BF-substituted or unsubstituted heteroaryl. In embodiments, R4B is independently hydrogen, halogen, —CF3, —CCl3, —CBr3, —CI3, —CN, —OH, —NH2, —COOH, —CONH2, —NO2, —SH, —SO3H, —SO4H, —SO2NH2, —NHNH2, —ONH2, —NHC(O)NHNH2, —NHC(O)NH2, —NHSO2H, —NHC(O)H, —NHC(O)OH, —NHOH, —OCF3, —OCCl3, —OCBr3, —OCI3, —OCHF2, —OCHCl2, —OCHBr2, —OCHI2, R4BF-substituted or unsubstituted C1-C6 alkyl, R4BF-substituted or unsubstituted 2 to 6 membered heteroalkyl, R4BF-substituted or unsubstituted C3-C6 cycloalkyl, R4BF-substituted or unsubstituted 3 to 6 membered heterocycloalkyl, R4BF-substituted or unsubstituted phenyl, or R4BF-substituted or unsubstituted 5 to 6 membered heteroaryl.


In embodiments, R4C is independently hydrogen, halogen, —CF3, —CCl3, —CBr3, —CI3, —CN, —OH, —NH2, —COOH, —CONH2, —NO2, —SH, —SO3H, —SO4H, —SO2NH2, —NHNH2, —ONH2, —NHC(O)NHNH2, —NHC(O)NH2, —NHSO2H, —NHC(O)H, —NHC(O)OH, —NHOH, —OCF3, —OCCl3, —OCBr3, —OCI3, —OCHF2, —OCHCl2, —OCHBr2, —OCHI2, R4CF-substituted or unsubstituted alkyl, R4CF-substituted or unsubstituted heteroalkyl, R4CF-substituted or unsubstituted cycloalkyl, R4CF-substituted or unsubstituted heterocycloalkyl, R4CF-substituted or unsubstituted aryl, or R4CF-substituted or unsubstituted heteroaryl. In embodiments, R4C is independently hydrogen, halogen, —CF3, —CCl3, —CBr3, —CI3, —CN, —OH, —NH2, —COOH, —CONH2, —NO2, —SH, —SO3H, —SO4H, —SO2NH2, —NHNH2, —ONH2, —NHC(O)NHNH2, —NHC(O)NH2, —NHSO2H, —NHC(O)H, —NHC(O)OH, —NHOH, —OCF3, —OCCl3, —OCBr3, —OCI3, —OCHF2, —OCHCl2, —OCHBr2, —OCHI2, R4CF-substituted or unsubstituted C1-C6 alkyl, R4CF-substituted or unsubstituted 2 to 6 membered heteroalkyl, R4CF-substituted or unsubstituted C3-C6 cycloalkyl, R4CF-substituted or unsubstituted 3 to 6 membered heterocycloalkyl, R4CF-substituted or unsubstituted phenyl, or R4CF-substituted or unsubstituted 5 to 6 membered heteroaryl. R4B and R4C bonded to the same nitrogen atom may optionally be joined to form a R4CF-substituted or unsubstituted 3 to 6 membered heterocycloalkyl or R4CF-substituted or unsubstituted 5 to 6 membered heteroaryl.


In embodiments, R4D is independently hydrogen, halogen, —CF3, —CCl3, —CBr3, —CI3, —CN, —OH, —NH2, —COOH, —CONH2, —NO2, —SH, —SO3H, —SO4H, —SO2NH2, —NHNH2, —ONH2, —NHC(O)NHNH2, —NHC(O)NH2, —NHSO2H, —NHC(O)H, —NHC(O)OH, —NHOH, —OCF3, —OCCl3, —OCBr3, —OCI3, —OCHF2, —OCHCl2, —OCHBr2, —OCHI2, R4DF-substituted or unsubstituted alkyl, R4DF-substituted or unsubstituted heteroalkyl, R4DF-substituted or unsubstituted cycloalkyl, R4DF-substituted or unsubstituted heterocycloalkyl, R4DF-substituted or unsubstituted aryl, or R4DF-substituted or unsubstituted heteroaryl. In embodiments, R4D is independently hydrogen, halogen, —CF3, —CCl3, —CBr3, —CI3, —CN, —OH, —NH2, —COOH, —CONH2, —NO2, —SH, —SO3H, —SO4H, —SO2NH2, —NHNH2, —ONH2, —NHC(O)NHNH2, —NHC(O)NH2, —NHSO2H, —NHC(O)H, —NHC(O)OH, —NHOH, —OCF3, —OCCl3, —OCBr3, —OCI3, —OCHF2, —OCHCl2, —OCHBr2, —OCHI2, R4DF-substituted or unsubstituted C1-C6 alkyl, R4DF-substituted or unsubstituted 2 to 6 membered heteroalkyl, R4DF-substituted or unsubstituted C3-C6 cycloalkyl, R4DF-substituted or unsubstituted 3 to 6 membered heterocycloalkyl, R4DF-substituted or unsubstituted phenyl, or R4DF-substituted or unsubstituted 5 to 6 membered heteroaryl.


In embodiments, R5A is independently hydrogen, halogen, —CF3, —CCl3, —CBr3, —CI3, —CN, —OH, —NH2, —COOH, —CONH2, —NO2, —SH, —SO3H, —SO4H, —SO2NH2, —NHNH2, —ONH2, —NHC(O)NHNH2, —NHC(O)NH2, —NHSO2H, —NHC(O)H, —NHC(O)OH, —NHOH, —OCF3, —OCCl3, —OCBr3, —OCI3, —OCHF2, —OCHCl2, —OCHBr2, —OCHI2, R5AF-substituted or unsubstituted alkyl, R5AF-substituted or unsubstituted heteroalkyl, R5AF-substituted or unsubstituted cycloalkyl, R5AF-substituted or unsubstituted heterocycloalkyl, R5AF-substituted or unsubstituted aryl, or R5AF-substituted or unsubstituted heteroaryl. In embodiments, R5A is independently hydrogen, halogen, —CF3, —CCl3, —CBr3, —CI3, —CN, —OH, —NH2, —COOH, —CONH2, —NO2, —SH, —SO3H, —SO4H, —SO2NH2, —NHNH2, —ONH2, —NHC(O)NHNH2, —NHC(O)NH2, —NHSO2H, —NHC(O)H, —NHC(O)OH, —NHOH, —OCF3, —OCCl3, —OCBr3, —OCI3, —OCHF2, —OCHCl2, —OCHBr2, —OCHI2, R5AF-substituted or unsubstituted C1-C6 alkyl, R5AF-substituted or unsubstituted 2 to 6 membered heteroalkyl, R5AF-substituted or unsubstituted C3-C6 cycloalkyl, R5AF-substituted or unsubstituted 3 to 6 membered heterocycloalkyl, R5AF-substituted or unsubstituted phenyl, or R5AF-substituted or unsubstituted 5 to 6 membered heteroaryl.


In embodiments, R5B is independently hydrogen, halogen, —CF3, —CCl3, —CBr3, —CI3, —CN, —OH, —NH2, —COOH, —CONH2, —NO2, —SH, —SO3H, —SO4H, —SO2NH2, —NHNH2, —ONH2, —NHC(O)NHNH2, —NHC(O)NH2, —NHSO2H, —NHC(O)H, —NHC(O)OH, —NHOH, —OCF3, —OCCl3, —OCBr3, —OCI3, —OCHF2, —OCHCl2, —OCHBr2, —OCHI2, R5BF-substituted or unsubstituted alkyl, R5BF-substituted or unsubstituted heteroalkyl, R5BF-substituted or unsubstituted cycloalkyl, R5BF-substituted or unsubstituted heterocycloalkyl, R5BF-substituted or unsubstituted aryl, or R5BF-substituted or unsubstituted heteroaryl. In embodiments, R5B is independently hydrogen, halogen, —CF3, —CCl3, —CBr3, —CI3, —CN, —OH, —NH2, —COOH, —CONH2, —NO2, —SH, —SO3H, —SO4H, —SO2NH2, —NHNH2, —ONH2, —NHC(O)NHNH2, —NHC(O)NH2, —NHSO2H, —NHC(O)H, —NHC(O)OH, —NHOH, —OCF3, —OCCl3, —OCBr3, —OCI3, —OCHF2, —OCHCl2, —OCHBr2, —OCHI2, R5BF-substituted or unsubstituted C1-C6 alkyl, R5BF-substituted or unsubstituted 2 to 6 membered heteroalkyl, R5BF-substituted or unsubstituted C3-C6 cycloalkyl, R5BF-substituted or unsubstituted 3 to 6 membered heterocycloalkyl, R5BF-substituted or unsubstituted phenyl, or R5BF-substituted or unsubstituted 5 to 6 membered heteroaryl.


In embodiments, R5C is independently hydrogen, halogen, —CF3, —CCl3, —CBr3, —CI3, —CN, —OH, —NH2, —COOH, —CONH2, —NO2, —SH, —SO3H, —SO4H, —SO2NH2, —NHNH2, —ONH2, —NHC(O)NHNH2, —NHC(O)NH2, —NHSO2H, —NHC(O)H, —NHC(O)OH, —NHOH, —OCF3, —OCCl3, —OCBr3, —OCI3, —OCHF2, —OCHCl2, —OCHBr2, —OCHI2, R5CF-substituted or unsubstituted alkyl, R5CF-substituted or unsubstituted heteroalkyl, R5CF-substituted or unsubstituted cycloalkyl, R5CF-substituted or unsubstituted heterocycloalkyl, R5CF-substituted or unsubstituted aryl, or R5CF-substituted or unsubstituted heteroaryl. In embodiments, R5C is independently hydrogen, halogen, —CF3, —CCl3, —CBr3, —CI3, —CN, —OH, —NH2, —COOH, —CONH2, —NO2, —SH, —SO3H, —SO4H, —SO2NH2, —NHNH2, —ONH2, —NHC(O)NHNH2, —NHC(O)NH2, —NHSO2H, —NHC(O)H, —NHC(O)OH, —NHOH, —OCF3, —OCCl3, —OCBr3, —OCI3, —OCHF2, —OCHCl2, —OCHBr2, —OCHI2, R5CF-substituted or unsubstituted C1-C6 alkyl, R5CF-substituted or unsubstituted 2 to 6 membered heteroalkyl, R5CF-substituted or unsubstituted C3-C6 cycloalkyl, R5CF-substituted or unsubstituted 3 to 6 membered heterocycloalkyl, R5CF-substituted or unsubstituted phenyl, or R5CF-substituted or unsubstituted 5 to 6 membered heteroaryl. R5B and R5C bonded to the same nitrogen atom may optionally be joined to form a R5CF-substituted or unsubstituted 3 to 6 membered heterocycloalkyl or R5CF-substituted or unsubstituted 5 to 6 membered heteroaryl.


In embodiments, R5D is independently hydrogen, halogen, —CF3, —CCl3, —CBr3, —CI3, —CN, —OH, —NH2, —COOH, —CONH2, —NO2, —SH, —SO3H, —SO4H, —SO2NH2, —NHNH2, —ONH2, —NHC(O)NHNH2, —NHC(O)NH2, —NHSO2H, —NHC(O)H, —NHC(O)OH, —NHOH, —OCF3, —OCCl3, —OCBr3, —OCI3, —OCHF2, —OCHCl2, —OCHBr2, —OCHI2, R5DF-substituted or unsubstituted alkyl, R5DF-substituted or unsubstituted heteroalkyl, R5DF-substituted or unsubstituted cycloalkyl, R5DF-substituted or unsubstituted heterocycloalkyl, R5DF-substituted or unsubstituted aryl, or R5DF-substituted or unsubstituted heteroaryl. In embodiments, R5D is independently hydrogen, halogen, —CF3, —CCl3, —CBr3, —CI3, —CN, —OH, —NH2, —COOH, —CONH2, —NO2, —SH, —SO3H, —SO4H, —SO2NH2, —NHNH2, —ONH2, —NHC(O)NHNH2, —NHC(O)NH2, —NHSO2H, —NHC(O)H, —NHC(O)OH, —NHOH, —OCF3, —OCCl3, —OCBr3, —OCI3, —OCHF2, —OCHCl2, —OCHBr2, —OCHI2, R5DF-substituted or unsubstituted C1-C6 alkyl, R5DF-substituted or unsubstituted 2 to 6 membered heteroalkyl, R5DF-substituted or unsubstituted C3-C6 cycloalkyl, R5DF-substituted or unsubstituted 3 to 6 membered heterocycloalkyl, R5DF-substituted or unsubstituted phenyl, or R5DF-substituted or unsubstituted 5 to 6 membered heteroaryl.


In embodiments, R6A is independently hydrogen, halogen, —CF3, —CCl3, —CBr3, —CI3, —CN, —OH, —NH2, —COOH, —CONH2, —NO2, —SH, —SO3H, —SO4H, —SO2NH2, —NHNH2, —ONH2, —NHC(O)NHNH2, —NHC(O)NH2, —NHSO2H, —NHC(O)H, —NHC(O)OH, —NHOH, —OCF3, —OCCl3, —OCBr3, —OCI3, —OCHF2, —OCHCl2, —OCHBr2, —OCHI2, R6AF-substituted or unsubstituted alkyl, R6AF-substituted or unsubstituted heteroalkyl, R6AF-substituted or unsubstituted cycloalkyl, R6AF-substituted or unsubstituted heterocycloalkyl, R6AF-substituted or unsubstituted aryl, or R6AF-substituted or unsubstituted heteroaryl. In embodiments, R6A is independently hydrogen, halogen, —CF3, —CCl3, —CBr3, —CI3, —CN, —OH, —NH2, —COOH, —CONH2, —NO2, —SH, —SO3H, —SO4H, —SO2NH2, —NHNH2, —ONH2, —NHC(O)NHNH2, —NHC(O)NH2, —NHSO2H, —NHC(O)H, —NHC(O)OH, —NHOH, —OCF3, —OCCl3, —OCBr3, —OCI3, —OCHF2, —OCHCl2, —OCHBr2, —OCHI2, R6AF-substituted or unsubstituted C1-C6 alkyl, R6AF-substituted or unsubstituted 2 to 6 membered heteroalkyl, R6AF-substituted or unsubstituted C3-C6 cycloalkyl, R6AF-substituted or unsubstituted 3 to 6 membered heterocycloalkyl, R6AF-substituted or unsubstituted phenyl, or R6AF-substituted or unsubstituted 5 to 6 membered heteroaryl.


In embodiments, R6B is independently hydrogen, halogen, —CF3, —CCl3, —CBr3, —CI3, —CN, —OH, —NH2, —COOH, —CONH2, —NO2, —SH, —SO3H, —SO4H, —SO2NH2, —NHNH2, —ONH2, —NHC(O)NHNH2, —NHC(O)NH2, —NHSO3H, —NHC(O)H, —NHC(O)OH, —NHOH, —OCF3, —OCCl3, —OCBr3, —OCI3, —OCHF2, —OCHCl2, —OCHBr2, —OCHI2, R6BF-substituted or unsubstituted alkyl, R6BF-substituted or unsubstituted heteroalkyl, R6BF-substituted or unsubstituted cycloalkyl, R6BF-substituted or unsubstituted heterocycloalkyl, R6BF-substituted or unsubstituted aryl, or R6BF-substituted or unsubstituted heteroaryl. In embodiments, R6B is independently hydrogen, halogen, —CF3, —CCl3, —CBr3, —CI3, —CN, —OH, —NH2, —COOH, —CONH2, —NO2, —SH, —SO3H, —SO4H, —SO2NH2, —NHNH2, —ONH2, —NHC(O)NHNH2, —NHC(O)NH2, —NHSO2H, —NHC(O)H, —NHC(O)OH, —NHOH, —OCF3, —OCCl3, —OCBr3, —OCI3, —OCHF2, —OCHCl2, —OCHBr2, —OCHI2, R6BF-substituted or unsubstituted C1-C6 alkyl, R6BF-substituted or unsubstituted 2 to 6 membered heteroalkyl, R6BF-substituted or unsubstituted C3-C6 cycloalkyl, R6BF-substituted or unsubstituted 3 to 6 membered heterocycloalkyl, R6BF-substituted or unsubstituted phenyl, or R6BF-substituted or unsubstituted 5 to 6 membered heteroaryl.


In embodiments, R6C is independently hydrogen, halogen, —CF3, —CCl3, —CBr3, —CI3, —CN, —OH, —NH2, —COOH, —CONH2, —NO2, —SH, —SO3H, —SO4H, —SO2NH2, —NHNH2, —ONH2, —NHC(O)NHNH2, —NHC(O)NH2, —NHSO2H, —NHC(O)H, —NHC(O)OH, —NHOH, —OCF3, —OCCl3, —OCBr3, —OCI3, —OCHF2, —OCHCl2, —OCHBr2, —OCHI2, R6CF-substituted or unsubstituted alkyl, R6CF-substituted or unsubstituted heteroalkyl, R6CF-substituted or unsubstituted cycloalkyl, R6CF-substituted or unsubstituted heterocycloalkyl, R6CF-substituted or unsubstituted aryl, or R6CF-substituted or unsubstituted heteroaryl. In embodiments, R6C is independently hydrogen, halogen, —CF3, —CCl3, —CBr3, —CI3, —CN, —OH, —NH2, —COOH, —CONH2, —NO2, —SH, —SO3H, —SO4H, —SO2NH2, —NHNH2, —ONH2, —NHC(O)NHNH2, —NHC(O)NH2, —NHSO2H, —NHC(O)H, —NHC(O)OH, —NHOH, —OCF3, —OCCl3, —OCBr3, —OCI3, —OCHF2, —OCHCl2, —OCHBr2, —OCHI2, R6CF-substituted or unsubstituted C1-C6 alkyl, R6CF-substituted or unsubstituted 2 to 6 membered heteroalkyl, R6CF-substituted or unsubstituted C3-C6 cycloalkyl, R6CF-substituted or unsubstituted 3 to 6 membered heterocycloalkyl, R6CF-substituted or unsubstituted phenyl, or R6CF-substituted or unsubstituted 5 to 6 membered heteroaryl. R6B and R6C bonded to the same nitrogen atom may optionally be joined to form a R6CF-substituted or unsubstituted 3 to 6 membered heterocycloalkyl or R6CF-substituted or unsubstituted 5 to 6 membered heteroaryl.


In embodiments, R6D is independently hydrogen, halogen, —CF3, —CCl3, —CBr3, —CI3, —CN, —OH, —NH2, —COOH, —CONH2, —NO2, —SH, —SO3H, —SO4H, —SO2NH2, —NHNH2, —ONH2, —NHC(O)NHNH2, —NHC(O)NH2, —NHSO3H, —NHC(O)H, —NHC(O)OH, —NHOH, —OCF3, —OCCl3, —OCBr3, —OCI3, —OCHF2, —OCHCl2, —OCHBr2, —OCHI2, R6DF-substituted or unsubstituted alkyl, R6DF-substituted or unsubstituted heteroalkyl, R6DF-substituted or unsubstituted cycloalkyl, R6DF-substituted or unsubstituted heterocycloalkyl, R6DF-substituted or unsubstituted aryl, or R6DF-substituted or unsubstituted heteroaryl. In embodiments, R6D is independently hydrogen, halogen, —CF3, —CCl3, —CBr3, —CI3, —CN, —OH, —NH2, —COOH, —CONH2, —NO2, —SH, —SO3H, —SO4H, —SO2NH2, —NHNH2, —ONH2, —NHC(O)NHNH2, —NHC(O)NH2, —NHSO2H, —NHC(O)H, —NHC(O)OH, —NHOH, —OCF3, —OCCl3, —OCBr3, —OCI3, —OCHF2, —OCHCl2, —OCHBr2, —OCHI2, R6DF-substituted or unsubstituted C1-C6 alkyl, R6DF-substituted or unsubstituted 2 to 6 membered heteroalkyl, R6DF-substituted or unsubstituted C3-C6 cycloalkyl, R6DF-substituted or unsubstituted 3 to 6 membered heterocycloalkyl, R6DF-substituted or unsubstituted phenyl, or R6DF-substituted or unsubstituted 5 to 6 membered heteroaryl.


In embodiments, R7A is independently hydrogen, halogen, —CF3, —CCl3, —CBr3, —CI3, —CN, —OH, —NH2, —COOH, —CONH2, —NO2, —SH, —SO3H, —SO4H, —SO2NH2, —NHNH2, —ONH2, —NHC(O)NHNH2, —NHC(O)NH2, —NHSO2H, —NHC(O)H, —NHC(O)OH, —NHOH, —OCF3, —OCCl3, —OCBr3, —OCI3, —OCHF2, —OCHCl2, —OCHBr2, —OCHI2, R7AF-substituted or unsubstituted alkyl, R7AF-substituted or unsubstituted heteroalkyl, R7AF-substituted or unsubstituted cycloalkyl, R7AF-substituted or unsubstituted heterocycloalkyl, R7AF-substituted or unsubstituted aryl, or R7AF-substituted or unsubstituted heteroaryl. In embodiments, R7A is independently hydrogen, halogen, —CF3, —CCl3, —CBr3, —CI3, —CN, —OH, —NH2, —COOH, —CONH2, —NO2, —SH, —SO3H, —SO4H, —SO2NH2, —NHNH2, —ONH2, —NHC(O)NHNH2, —NHC(O)NH2, —NHSO2H, —NHC(O)H, —NHC(O)OH, —NHOH, —OCF3, —OCCl3, —OCBr3, —OCI3, —OCHF2, —OCHCl2, —OCHBr2, —OCHI2, R7AF-substituted or unsubstituted C1-C6 alkyl, R7AF-substituted or unsubstituted 2 to 6 membered heteroalkyl, R7AF-substituted or unsubstituted C3-C6 cycloalkyl, R7AF-substituted or unsubstituted 3 to 6 membered heterocycloalkyl, R7AF-substituted or unsubstituted phenyl, or R7AF-substituted or unsubstituted 5 to 6 membered heteroaryl.


In embodiments, R7B is independently hydrogen, halogen, —CF3, —CCl3, —CBr3, —CI3, —CN, —OH, —NH2, —COOH, —CONH2, —NO2, —SH, —SO3H, —SO4H, —SO2NH2, —NHNH2, —ONH2, —NHC(O)NHNH2, —NHC(O)NH2, —NHSO2H, —NHC(O)H, —NHC(O)OH, —NHOH, —OCF3, —OCCl3, —OCBr3, —OCI3, —OCHF2, —OCHCl2, —OCHBr2, —OCHI2, R7BF-substituted or unsubstituted alkyl, R7BF-substituted or unsubstituted heteroalkyl, R7BF-substituted or unsubstituted cycloalkyl, R7BF-substituted or unsubstituted heterocycloalkyl, R7BF-substituted or unsubstituted aryl, or R7BF-substituted or unsubstituted heteroaryl. In embodiments, R7B is independently hydrogen, halogen, —CF3, —CCl3, —CBr3, —CI3, —CN, —OH, —NH2, —COOH, —CONH2, —NO2, —SH, —SO3H, —SO4H, —SO2NH2, —NHNH2, —ONH2, —NHC(O)NHNH2, —NHC(O)NH2, —NHSO2H, —NHC(O)H, —NHC(O)OH, —NHOH, —OCF3, —OCCl3, —OCBr3, —OCI3, —OCHF2, —OCHCl2, —OCHBr2, —OCHI2, R7BF-substituted or unsubstituted C1-C6 alkyl, R7BF-substituted or unsubstituted 2 to 6 membered heteroalkyl, R7BF-substituted or unsubstituted C3-C6 cycloalkyl, R7BF-substituted or unsubstituted 3 to 6 membered heterocycloalkyl, R7BF-substituted or unsubstituted phenyl, or R7BF-substituted or unsubstituted 5 to 6 membered heteroaryl.


In embodiments, R7C is independently hydrogen, halogen, —CF3, —CCl3, —CBr3, —CI3, —CN, —OH, —NH2, —COOH, —CONH2, —NO2, —SH, —SO3H, —SO4H, —SO2NH2, —NHNH2, —ONH2, —NHC(O)NHNH2, —NHC(O)NH2, —NHSO2H, —NHC(O)H, —NHC(O)OH, —NHOH, —OCF3, —OCCl3, —OCBr3, —OCI3, —OCHF2, —OCHCl2, —OCHBr2, —OCHI2, R7CF-substituted or unsubstituted alkyl, R7CF-substituted or unsubstituted heteroalkyl, R7CF-substituted or unsubstituted cycloalkyl, R7CF-substituted or unsubstituted heterocycloalkyl, R7CF-substituted or unsubstituted aryl, or R7CF-substituted or unsubstituted heteroaryl. In embodiments, R7C is independently hydrogen, halogen, —CF3, —CCl3, —CBr3, —CI3, —CN, —OH, —NH2, —COOH, —CONH2, —NO2, —SH, —SO3H, —SO4H, —SO2NH2, —NHNH2, —ONH2, —NHC(O)NHNH2, —NHC(O)NH2, —NHSO2H, —NHC(O)H, —NHC(O)OH, —NHOH, —OCF3, —OCCl3, —OCBr3, —OCI3, —OCHF2, —OCHCl2, —OCHBr2, —OCHI2, R7CF-substituted or unsubstituted C1-C6 alkyl, R7CF-substituted or unsubstituted 2 to 6 membered heteroalkyl, R7CF-substituted or unsubstituted C3-C6 cycloalkyl, R7CF-substituted or unsubstituted 3 to 6 membered heterocycloalkyl, R7CF-substituted or unsubstituted phenyl, or R7CF-substituted or unsubstituted 5 to 6 membered heteroaryl. R7B and R7C bonded to the same nitrogen atom may optionally be joined to form a R7CF-substituted or unsubstituted 3 to 6 membered heterocycloalkyl or R7CF-substituted or unsubstituted 5 to 6 membered heteroaryl.


In embodiments, R7D is independently hydrogen, halogen, —CF3, —CCl3, —CBr3, —CI3, —CN, —OH, —NH2, —COOH, —CONH2, —NO2, —SH, —SO3H, —SO4H, —SO2NH2, —NHNH2, —ONH2, —NHC(O)NHNH2, —NHC(O)NH2, —NHSO2H, —NHC(O)H, —NHC(O)OH, —NHOH, —OCF3, —OCCl3, —OCBr3, —OCI3, —OCHF2, —OCHCl2, —OCHBr2, —OCHI2, R7DF-substituted or unsubstituted alkyl, R7DF-substituted or unsubstituted heteroalkyl, R7DF-substituted or unsubstituted cycloalkyl, R7DF-substituted or unsubstituted heterocycloalkyl, R7DF-substituted or unsubstituted aryl, or R7DF-substituted or unsubstituted heteroaryl. In embodiments, R7D is independently hydrogen, halogen, —CF3, —CCl3, —CBr3, —CI3, —CN, —OH, —NH2, —COOH, —CONH2, —NO2, —SH, —SO3H, —SO4H, —SO2NH2, —NHNH2, —ONH2, —NHC(O)NHNH2, —NHC(O)NH2, —NHSO2H, —NHC(O)H, —NHC(O)OH, —NHOH, —OCF3, —OCCl3, —OCBr3, —OCI3, —OCHF2, —OCHCl2, —OCHBr2, —OCHI2, R7DF-substituted or unsubstituted C1-C6 alkyl, R7DF-substituted or unsubstituted 2 to 6 membered heteroalkyl, R7DF-substituted or unsubstituted C3-C6 cycloalkyl, R7DF-substituted or unsubstituted 3 to 6 membered heterocycloalkyl, R7DF-substituted or unsubstituted phenyl, or R7DF-substituted or unsubstituted 5 to 6 membered heteroaryl.


In embodiments, R8A is independently hydrogen, halogen, —CF3, —CCl3, —CBr3, —CI3, —CN, —OH, —NH2, —COOH, —CONH2, —NO2, —SH, —SO3H, —SO4H, —SO2NH2, —NHNH2, —ONH2, —NHC(O)NHNH2, —NHC(O)NH2, —NHSO2H, —NHC(O)H, —NHC(O)OH, —NHOH, —OCF3, —OCCl3, —OCBr3, —OCI3, —OCHF2, —OCHCl2, —OCHBr2, —OCHI2, R8AF-substituted or unsubstituted alkyl, R8AF-substituted or unsubstituted heteroalkyl, R8AF-substituted or unsubstituted cycloalkyl, R8AF-substituted or unsubstituted heterocycloalkyl, R8AF-substituted or unsubstituted aryl, or R8AF-substituted or unsubstituted heteroaryl. In embodiments, R8A is independently hydrogen, halogen, —CF3, —CCl3, —CBr3, —CI3, —CN, —OH, —NH2, —COOH, —CONH2, —NO2, —SH, —SO3H, —SO4H, —SO2NH2, —NHNH2, —ONH2, —NHC(O)NHNH2, —NHC(O)NH2, —NHSO2H, —NHC(O)H, —NHC(O)OH, —NHOH, —OCF3, —OCCl3, —OCBr3, —OCI3, —OCHF2, —OCHCl2, —OCHBr2, —OCHI2, R8AF-substituted or unsubstituted C1-C6 alkyl, R8AF-substituted or unsubstituted 2 to 6 membered heteroalkyl, R8AF-substituted or unsubstituted C3-C6 cycloalkyl, R8AF-substituted or unsubstituted 3 to 6 membered heterocycloalkyl, R8AF-substituted or unsubstituted phenyl, or R8AF-substituted or unsubstituted 5 to 6 membered heteroaryl.


In embodiments, R8B is independently hydrogen, halogen, —CF3, —CCl3, —CBr3, —CI3, —CN, —OH, —NH2, —COOH, —CONH2, —NO2, —SH, —SO3H, —SO4H, —SO2NH2, —NHNH2, —ONH2, —NHC(O)NHNH2, —NHC(O)NH2, —NHSO2H, —NHC(O)H, —NHC(O)OH, —NHOH, —OCF3, —OCCl3, —OCBr3, —OCI3, —OCHF2, —OCHCl2, —OCHBr2, —OCHI2, R8BF-substituted or unsubstituted alkyl, R8BF-substituted or unsubstituted heteroalkyl, R8BF-substituted or unsubstituted cycloalkyl, R8BF-substituted or unsubstituted heterocycloalkyl, R8BF-substituted or unsubstituted aryl, or R8BF-substituted or unsubstituted heteroaryl. In embodiments, R8B is independently hydrogen, halogen, —CF3, —CCl3, —CBr3, —CI3, —CN, —OH, —NH2, —COOH, —CONH2, —NO2, —SH, —SO3H, —SO4H, —SO2NH2, —NHNH2, —ONH2, —NHC(O)NHNH2, —NHC(O)NH2, —NHSO2H, —NHC(O)H, —NHC(O)OH, —NHOH, —OCF3, —OCCl3, —OCBr3, —OCI3, —OCHF2, —OCHCl2, —OCHBr2, —OCHI2, R8BF-substituted or unsubstituted C1-C6 alkyl, R8BF-substituted or unsubstituted 2 to 6 membered heteroalkyl, R8BF-substituted or unsubstituted C3-C6 cycloalkyl, R8BF-substituted or unsubstituted 3 to 6 membered heterocycloalkyl, R8BF-substituted or unsubstituted phenyl, or R8BF-substituted or unsubstituted 5 to 6 membered heteroaryl.


In embodiments, R8C is independently hydrogen, halogen, —CF3, —CCl3, —CBr3, —CI3, —CN, —OH, —NH2, —COOH, —CONH2, —NO2, —SH, —SO3H, —SO4H, —SO2NH2, —NHNH2, —ONH2, —NHC(O)NHNH2, —NHC(O)NH2, —NHSO2H, —NHC(O)H, —NHC(O)OH, —NHOH, —OCF3, —OCCl3, —OCBr3, —OCI3, —OCHF2, —OCHCl2, —OCHBr2, —OCHI2, R8CF-substituted or unsubstituted alkyl, R8CF-substituted or unsubstituted heteroalkyl, R8CF-substituted or unsubstituted cycloalkyl, R8CF-substituted or unsubstituted heterocycloalkyl, R8CF-substituted or unsubstituted aryl, or R8CF-substituted or unsubstituted heteroaryl. In embodiments, R8C is independently hydrogen, halogen, —CF3, —CCl3, —CBr3, —CI3, —CN, —OH, —NH2, —COOH, —CONH2, —NO2, —SH, —SO3H, —SO4H, —SO2NH2, —NHNH2, —ONH2, —NHC(O)NHNH2, —NHC(O)NH2, —NHSO2H, —NHC(O)H, —NHC(O)OH, —NHOH, —OCF3, —OCCl3, —OCBr3, —OCI3, —OCHF2, —OCHCl2, —OCHBr2, —OCHI2, R8CF-substituted or unsubstituted C1-C6 alkyl, R8CF-substituted or unsubstituted 2 to 6 membered heteroalkyl, R8CF-substituted or unsubstituted C3-C6 cycloalkyl, R8CF-substituted or unsubstituted 3 to 6 membered heterocycloalkyl, R8CF-substituted or unsubstituted phenyl, or R8CF-substituted or unsubstituted 5 to 6 membered heteroaryl. R8B and R8C bonded to the same nitrogen atom may optionally be joined to form a R8CF-substituted or unsubstituted 3 to 6 membered heterocycloalkyl or R8CF-substituted or unsubstituted 5 to 6 membered heteroaryl.


In embodiments, R8D is independently hydrogen, halogen, —CF3, —CCl3, —CBr3, —CI3, —CN, —OH, —NH2, —COOH, —CONH2, —NO2, —SH, —SO3H, —SO4H, —SO2NH2, —NHNH2, —ONH2, —NHC(O)NHNH2, —NHC(O)NH2, —NHSO2H, —NHC(O)H, —NHC(O)OH, —NHOH, —OCF3, —OCCl3, —OCBr3, —OCI3, —OCHF2, —OCHCl2, —OCHBr2, —OCHI2, R8DF-substituted or unsubstituted alkyl, R8DF-substituted or unsubstituted heteroalkyl, R8DF-substituted or unsubstituted cycloalkyl, R8DF-substituted or unsubstituted heterocycloalkyl, R8DF-substituted or unsubstituted aryl, or R8DF-substituted or unsubstituted heteroaryl. In embodiments, R8D is independently hydrogen, halogen, —CF3, —CCl3, —CBr3, —CI3, —CN, —OH, —NH2, —COOH, —CONH2, —NO2, —SH, —SO3H, —SO4H, —SO2NH2, —NHNH2, —ONH2, —NHC(O)NHNH2, —NHC(O)NH2, —NHSO2H, —NHC(O)H, —NHC(O)OH, —NHOH, —OCF3, —OCCl3, —OCBr3, —OCI3, —OCHF2, —OCHCl2, —OCHBr2, —OCHI2, R8DF-substituted or unsubstituted C1-C6 alkyl, R8DF-substituted or unsubstituted 2 to 6 membered heteroalkyl, R8DF-substituted or unsubstituted C3-C6 cycloalkyl, R8DF-substituted or unsubstituted 3 to 6 membered heterocycloalkyl, R8DF-substituted or unsubstituted phenyl, or R8DF-substituted or unsubstituted 5 to 6 membered heteroaryl.


In embodiments, R9A is independently hydrogen, halogen, —CF3, —CCl3, —CBr3, —CI3, —CN, —OH, —NH2, —COOH, —CONH2, —NO2, —SH, —SO3H, —SO4H, —SO2NH2, —NHNH2, —ONH2, —NHC(O)NHNH2, —NHC(O)NH2, —NHSO2H, —NHC(O)H, —NHC(O)OH, —NHOH, —OCF3, —OCCl3, —OCBr3, —OCI3, —OCHF2, —OCHCl2, —OCHBr2, —OCHI2, R9AF-substituted or unsubstituted alkyl, R9AF-substituted or unsubstituted heteroalkyl, R9AF-substituted or unsubstituted cycloalkyl, R9AF-substituted or unsubstituted heterocycloalkyl, R9AF-substituted or unsubstituted aryl, or R9AF-substituted or unsubstituted heteroaryl. In embodiments, R9A is independently hydrogen, halogen, —CF3, —CCl3, —CBr3, —CI3, —CN, —OH, —NH2, —COOH, —CONH2, —NO2, —SH, —SO3H, —SO4H, —SO2NH2, —NHNH2, —ONH2, —NHC(O)NHNH2, —NHC(O)NH2, —NHSO2H, —NHC(O)H, —NHC(O)OH, —NHOH, —OCF3, —OCCl3, —OCBr3, —OCI3, —OCHF2, —OCHCl2, —OCHBr2, —OCHI2, R9AF-substituted or unsubstituted C1-C6 alkyl, R9AF-substituted or unsubstituted 2 to 6 membered heteroalkyl, R9AF-substituted or unsubstituted C3-C6 cycloalkyl, R9AF-substituted or unsubstituted 3 to 6 membered heterocycloalkyl, R9AF-substituted or unsubstituted phenyl, or R9AF-substituted or unsubstituted 5 to 6 membered heteroaryl.


In embodiments, R9B is independently hydrogen, halogen, —CF3, —CCl3, —CBr3, —CI3, —CN, —OH, —NH2, —COOH, —CONH2, —NO2, —SH, —SO3H, —SO4H, —SO2NH2, —NHNH2, —ONH2, —NHC(O)NHNH2, —NHC(O)NH2, —NHSO2H, —NHC(O)H, —NHC(O)OH, —NHOH, —OCF3, —OCCl3, —OCBr3, —OCI3, —OCHF2, —OCHCl2, —OCHBr2, —OCHI2, R9BF-substituted or unsubstituted alkyl, R9BF-substituted or unsubstituted heteroalkyl, R9BF-substituted or unsubstituted cycloalkyl, R9BF-substituted or unsubstituted heterocycloalkyl, R9BF-substituted or unsubstituted aryl, or R9BF-substituted or unsubstituted heteroaryl. In embodiments, R9B is independently hydrogen, halogen, —CF3, —CCl3, —CBr3, —CI3, —CN, —OH, —NH2, —COOH, —CONH2, —NO2, —SH, —SO3H, —SO4H, —SO2NH2, —NHNH2, —ONH2, —NHC(O)NHNH2, —NHC(O)NH2, —NHSO2H, —NHC(O)H, —NHC(O)OH, —NHOH, —OCF3, —OCCl3, —OCBr3, —OCI3, —OCHF2, —OCHCl2, —OCHBr2, —OCHI2, R9BF-substituted or unsubstituted C1-C6 alkyl, R9BF-substituted or unsubstituted 2 to 6 membered heteroalkyl, R9BF-substituted or unsubstituted C3-C6 cycloalkyl, R9BF-substituted or unsubstituted 3 to 6 membered heterocycloalkyl, R9BF-substituted or unsubstituted phenyl, or R9BF-substituted or unsubstituted 5 to 6 membered heteroaryl.


In embodiments, R9C is independently hydrogen, halogen, —CF3, —CCl3, —CBr3, —CI3, —CN, —OH, —NH2, —COOH, —CONH2, —NO2, —SH, —SO3H, —SO4H, —SO2NH2, —NHNH2, —ONH2, —NHC(O)NHNH2, —NHC(O)NH2, —NHSO2H, —NHC(O)H, —NHC(O)OH, —NHOH, —OCF3, —OCCl3, —OCBr3, —OCI3, —OCHF2, —OCHCl2, —OCHBr2, —OCHI2, R9CF-substituted or unsubstituted alkyl, R9CF-substituted or unsubstituted heteroalkyl, R9CF-substituted or unsubstituted cycloalkyl, R9CF-substituted or unsubstituted heterocycloalkyl, R9CF-substituted or unsubstituted aryl, or R9CF-substituted or unsubstituted heteroaryl. In embodiments, R9C is independently hydrogen, halogen, —CF3, —CCl3, —CBr3, —CI3, —CN, —OH, —NH2, —COOH, —CONH2, —NO2, —SH, —SO3H, —SO4H, —SO2NH2, —NHNH2, —ONH2, —NHC(O)NHNH2, —NHC(O)NH2, —NHSO2H, —NHC(O)H, —NHC(O)OH, —NHOH, —OCF3, —OCCl3, —OCBr3, —OCI3, —OCHF2, —OCHCl2, —OCHBr2, —OCHI2, R9CF-substituted or unsubstituted C1-C6 alkyl, R9CF-substituted or unsubstituted 2 to 6 membered heteroalkyl, R9CF-substituted or unsubstituted C3-C6 cycloalkyl, R9CF-substituted or unsubstituted 3 to 6 membered heterocycloalkyl, R9CF-substituted or unsubstituted phenyl, or R9CF-substituted or unsubstituted 5 to 6 membered heteroaryl. R9B and R9C bonded to the same nitrogen atom may optionally be joined to form a R9CF-substituted or unsubstituted 3 to 6 membered heterocycloalkyl or R9CF-substituted or unsubstituted 5 to 6 membered heteroaryl.


In embodiments, R9D is independently hydrogen, halogen, —CF3, —CCl3, —CBr3, —CI3, —CN, —OH, —NH2, —COOH, —CONH2, —NO2, —SH, —SO3H, —SO4H, —SO2NH2, —NHNH2, —ONH2, —NHC(O)NHNH2, —NHC(O)NH2, —NHSO2H, —NHC(O)H, —NHC(O)OH, —NHOH, —OCF3, —OCCl3, —OCBr3, —OCI3, —OCHF2, —OCHCl2, —OCHBr2, —OCHI2, R9DF-substituted or unsubstituted alkyl, R9DF-substituted or unsubstituted heteroalkyl, R9DF-substituted or unsubstituted cycloalkyl, R9DF-substituted or unsubstituted heterocycloalkyl, R9DF-substituted or unsubstituted aryl, or R9DF-substituted or unsubstituted heteroaryl. In embodiments, R9D is independently hydrogen, halogen, —CF3, —CCl3, —CBr3, —CI3, —CN, —OH, —NH2, —COOH, —CONH2, —NO2, —SH, —SO3H, —SO4H, —SO2NH2, —NHNH2, —ONH2, —NHC(O)NHNH2, —NHC(O)NH2, —NHSO2H, —NHC(O)H, —NHC(O)OH, —NHOH, —OCF3, —OCCl3, —OCBr3, —OCI3, —OCHF2, —OCHCl2, —OCHBr2, —OCHI2, R9DF-substituted or unsubstituted C1-C6 alkyl, R9DF-substituted or unsubstituted 2 to 6 membered heteroalkyl, R9DF-substituted or unsubstituted C3-C6 cycloalkyl, R9DF-substituted or unsubstituted 3 to 6 membered heterocycloalkyl, R9DF-substituted or unsubstituted phenyl, or R9DF-substituted or unsubstituted 5 to 6 membered heteroaryl.


In embodiments, R10A is independently hydrogen, halogen, —CF3, —CCl3, —CBr3, —CI3, —CN, —OH, —NH2, —COOH, —CONH2, —NO2, —SH, —SO3H, —SO4H, —SO2NH2, —NHNH2, —ONH2, —NHC(O)NHNH2, —NHC(O)NH2, —NHSO2H, —NHC(O)H, —NHC(O)OH, —NHOH, —OCF3, —OCCl3, —OCBr3, —OCI3, —OCHF2, —OCHCl2, —OCHBr2, —OCHI2, R10AF-substituted or unsubstituted alkyl, R10AF-substituted or unsubstituted heteroalkyl, R10AF-substituted or unsubstituted cycloalkyl, R10AF-substituted or unsubstituted heterocycloalkyl, R10AF-substituted or unsubstituted aryl, or R10AF-substituted or unsubstituted heteroaryl. In embodiments, R10A is independently hydrogen, halogen, —CF3, —CCl3, —CBr3, —CI3, —CN, —OH, —NH2, —COOH, —CONH2, —NO2, —SH, —SO3H, —SO4H, —SO2NH2, —NHNH2, —ONH2, —NHC(O)NHNH2, —NHC(O)NH2, —NHSO2H, —NHC(O)H, —NHC(O)OH, —NHOH, —OCF3, —OCCl3, —OCBr3, —OCI3, —OCHF2, —OCHCl2, —OCHBr2, —OCHI2, R10AF-substituted or unsubstituted C1-C6 alkyl, R10AF-substituted or unsubstituted 2 to 6 membered heteroalkyl, R10AF-substituted or unsubstituted C3-C6 cycloalkyl, R10AF-substituted or unsubstituted 3 to 6 membered heterocycloalkyl, R10AF-substituted or unsubstituted phenyl, or R10AF-substituted or unsubstituted 5 to 6 membered heteroaryl.


In embodiments, R10B is independently hydrogen, halogen, —CF3, —CCl3, —CBr3, —CI3, —CN, —OH, —NH2, —COOH, —CONH2, —NO2, —SH, —SO3H, —SO4H, —SO2NH2, —NHNH2, —ONH2, —NHC(O)NHNH2, —NHC(O)NH2, —NHSO2H, —NHC(O)H, —NHC(O)OH, —NHOH, —OCF3, —OCCl3, —OCBr3, —OCI3, —OCHF2, —OCHCl2, —OCHBr2, —OCHI2, R10BF-substituted or unsubstituted alkyl, R10BF-substituted or unsubstituted heteroalkyl, R10BF-substituted or unsubstituted cycloalkyl, R10BF-substituted or unsubstituted heterocycloalkyl, R10BF-substituted or unsubstituted aryl, or R10BF-substituted or unsubstituted heteroaryl. In embodiments, R10B is independently hydrogen, halogen, —CF3, —CCl3, —CBr3, —CI3, —CN, —OH, —NH2, —COOH, —CONH2, —NO2, —SH, —SO3H, —SO4H, —SO2NH2, —NHNH2, —ONH2, —NHC(O)NHNH2, —NHC(O)NH2, —NHSO2H, —NHC(O)H, —NHC(O)OH, —NHOH, —OCF3, —OCCl3, —OCBr3, —OCI3, —OCHF2, —OCHCl2, —OCHBr2, —OCHI2, R10BF-substituted or unsubstituted C1-C6 alkyl, R10BF-substituted or unsubstituted 2 to 6 membered heteroalkyl, R10BF-substituted or unsubstituted C3-C6 cycloalkyl, R10BF-substituted or unsubstituted 3 to 6 membered heterocycloalkyl, R10BF-substituted or unsubstituted phenyl, or R10BF-substituted or unsubstituted 5 to 6 membered heteroaryl.


In embodiments, R10C is independently hydrogen, halogen, —CF3, —CCl3, —CBr3, —CI3, —CN, —OH, —NH2, —COOH, —CONH2, —NO2, —SH, —SO3H, —SO4H, —SO2NH2, —NHNH2, —ONH2, —NHC(O)NHNH2, —NHC(O)NH2, —NHSO2H, —NHC(O)H, —NHC(O)OH, —NHOH, —OCF3, —OCCl3, —OCBr3, —OCI3, —OCHF2, —OCHCl2, —OCHBr2, —OCHI2, R10CF-substituted or unsubstituted alkyl, R10CF-substituted or unsubstituted heteroalkyl, R10CF-substituted or unsubstituted cycloalkyl, R10CF-substituted or unsubstituted heterocycloalkyl, R10CF-substituted or unsubstituted aryl, or R10CF-substituted or unsubstituted heteroaryl. In embodiments, R10C is independently hydrogen, halogen, —CF3, —CCl3, —CBr3, —CI3, —CN, —OH, —NH2, —COOH, —CONH2, —NO2, —SH, —SO3H, —SO4H, —SO2NH2, —NHNH2, —ONH2, —NHC(O)NHNH2, —NHC(O)NH2, —NHSO2H, —NHC(O)H, —NHC(O)OH, —NHOH, —OCF3, —OCCl3, —OCBr3, —OCI3, —OCHF2, —OCHCl2, —OCHBr2, —OCHI2, R10CF-substituted or unsubstituted C1-C6 alkyl, R10CF-substituted or unsubstituted 2 to 6 membered heteroalkyl, R10CF-substituted or unsubstituted C3-C6 cycloalkyl, R10CF-substituted or unsubstituted 3 to 6 membered heterocycloalkyl, R10CF-substituted or unsubstituted phenyl, or R10CF-substituted or unsubstituted 5 to 6 membered heteroaryl. R10B and R10C bonded to the same nitrogen atom may optionally be joined to form a R10CF-substituted or unsubstituted 3 to 6 membered heterocycloalkyl or R10CF-substituted or unsubstituted 5 to 6 membered heteroaryl.


In embodiments, R10D is independently hydrogen, halogen, —CF3, —CCl3, —CBr3, —CI3, —CN, —OH, —NH2, —COOH, —CONH2, —NO2, —SH, —SO3H, —SO4H, —SO2NH2, —NHNH2, —ONH2, —NHC(O)NHNH2, —NHC(O)NH2, —NHSO2H, —NHC(O)H, —NHC(O)OH, —NHOH, —OCF3, —OCCl3, —OCBr3, —OCI3, —OCHF2, —OCHCl2, —OCHBr2, —OCHI2, R10DF-substituted or unsubstituted alkyl, R10DF-substituted or unsubstituted heteroalkyl, R10DF-substituted or unsubstituted cycloalkyl, R10DF-substituted or unsubstituted heterocycloalkyl, R10DF-substituted or unsubstituted aryl, or R10DF-substituted or unsubstituted heteroaryl. In embodiments, R10D is independently hydrogen, halogen, —CF3, —CCl3, —CBr3, —CI3, —CN, —OH, —NH2, —COOH, —CONH2, —NO2, —SH, —SO3H, —SO4H, —SO2NH2, —NHNH2, —ONH2, —NHC(O)NHNH2, —NHC(O)NH2, —NHSO2H, —NHC(O)H, —NHC(O)OH, —NHOH, —OCF3, —OCCl3, —OCBr3, —OCI3, —OCHF2, —OCHCl2, —OCHBr2, —OCHI2, R10DF-substituted or unsubstituted C1-C6 alkyl, R10DF-substituted or unsubstituted 2 to 6 membered heteroalkyl, R10DF-substituted or unsubstituted C3-C6 cycloalkyl, R10DF-substituted or unsubstituted 3 to 6 membered heterocycloalkyl, R10DF-substituted or unsubstituted phenyl, or R10DF-substituted or unsubstituted 5 to 6 membered heteroaryl.


In embodiments, R11A is independently hydrogen, halogen, —CF3, —CCl3, —CBr3, —CI3, —CN, —OH, —NH2, —COOH, —CONH2, —NO2, —SH, —SO3H, —SO4H, —SO2NH2, —NHNH2, —ONH2, —NHC(O)NHNH2, —NHC(O)NH2, —NHSO2H, —NHC(O)H, —NHC(O)OH, —NHOH, —OCF3, —OCCl3, —OCBr3, —OCI3, —OCHF2, —OCHCl2, —OCHBr2, —OCHI2, R11AF-substituted or unsubstituted alkyl, R11AF-substituted or unsubstituted heteroalkyl, R11AF-substituted or unsubstituted cycloalkyl, R11AF-substituted or unsubstituted heterocycloalkyl, R11AF-substituted or unsubstituted aryl, or R11AF-substituted or unsubstituted heteroaryl. In embodiments, R11A is independently hydrogen, halogen, —CF3, —CCl3, —CBr3, —CI3, —CN, —OH, —NH2, —COOH, —CONH2, —NO2, —SH, —SO3H, —SO4H, —SO2NH2, —NHNH2, —ONH2, —NHC(O)NHNH2, —NHC(O)NH2, —NHSO2H, —NHC(O)H, —NHC(O)OH, —NHOH, —OCF3, —OCCl3, —OCBr3, —OCI3, —OCHF2, —OCHCl2, —OCHBr2, —OCHI2, R11AF-substituted or unsubstituted C1-C6 alkyl, R11AF-substituted or unsubstituted 2 to 6 membered heteroalkyl, R11AF-substituted or unsubstituted C3-C6 cycloalkyl, R11AF-substituted or unsubstituted 3 to 6 membered heterocycloalkyl, R11AF-substituted or unsubstituted phenyl, or R11AF-substituted or unsubstituted 5 to 6 membered heteroaryl.


In embodiments, R11B is independently hydrogen, halogen, —CF3, —CCl3, —CBr3, —CI3, —CN, —OH, —NH2, —COOH, —CONH2, —NO2, —SH, —SO3H, —SO4H, —SO2NH2, —NHNH2, —ONH2, —NHC(O)NHNH2, —NHC(O)NH2, —NHSO2H, —NHC(O)H, —NHC(O)OH, —NHOH, —OCF3, —OCCl3, —OCBr3, —OCI3, —OCHF2, —OCHCl2, —OCHBr2, —OCHI2, R11BF-substituted or unsubstituted alkyl, R11BF-substituted or unsubstituted heteroalkyl, R11BF-substituted or unsubstituted cycloalkyl, R11BF-substituted or unsubstituted heterocycloalkyl, R11BF-substituted or unsubstituted aryl, or R11BF-substituted or unsubstituted heteroaryl. In embodiments, R11B is independently hydrogen, halogen, —CF3, —CCl3, —CBr3, —CI3, —CN, —OH, —NH2, —COOH, —CONH2, —NO2, —SH, —SO3H, —SO4H, —SO2NH2, —NHNH2, —ONH2, —NHC(O)NHNH2, —NHC(O)NH2, —NHSO2H, —NHC(O)H, —NHC(O)OH, —NHOH, —OCF3, —OCCl3, —OCBr3, —OCI3, —OCHF2, —OCHCl2, —OCHBr2, —OCHI2, R11BF-substituted or unsubstituted C1-C6 alkyl, R11BF-substituted or unsubstituted 2 to 6 membered heteroalkyl, R11BF-substituted or unsubstituted C3-C6 cycloalkyl, R11BF-substituted or unsubstituted 3 to 6 membered heterocycloalkyl, R11BF-substituted or unsubstituted phenyl, or R11BF-substituted or unsubstituted 5 to 6 membered heteroaryl.


In embodiments, R11C is independently hydrogen, halogen, —CF3, —CCl3, —CBr3, —CI3, —CN, —OH, —NH2, —COOH, —CONH2, —NO2, —SH, —SO3H, —SO4H, —SO2NH2, —NHNH2, —ONH2, —NHC(O)NHNH2, —NHC(O)NH2, —NHSO2H, —NHC(O)H, —NHC(O)OH, —NHOH, —OCF3, —OCCl3, —OCBr3, —OCI3, —OCHF2, —OCHCl2, —OCHBr2, —OCHI2, R11CF-substituted or unsubstituted alkyl, R11CF-substituted or unsubstituted heteroalkyl, R11CF-substituted or unsubstituted cycloalkyl, R11CF-substituted or unsubstituted heterocycloalkyl, R11CF-substituted or unsubstituted aryl, or R11CF-substituted or unsubstituted heteroaryl. In embodiments, R11C is independently hydrogen, halogen, —CF3, —CCl3, —CBr3, —CI3, —CN, —OH, —NH2, —COOH, —CONH2, —NO2, —SH, —SO3H, —SO4H, —SO2NH2, —NHNH2, —ONH2, —NHC(O)NHNH2, —NHC(O)NH2, —NHSO2H, —NHC(O)H, —NHC(O)OH, —NHOH, —OCF3, —OCCl3, —OCBr3, —OCI3, —OCHF2, —OCHCl2, —OCHBr2, —OCHI2, R11CF-substituted or unsubstituted C1-C6 alkyl, R11CF-substituted or unsubstituted 2 to 6 membered heteroalkyl, R11CF-substituted or unsubstituted C3-C6 cycloalkyl, R11CF-substituted or unsubstituted 3 to 6 membered heterocycloalkyl, R11CF-substituted or unsubstituted phenyl, or R11CF-substituted or unsubstituted 5 to 6 membered heteroaryl. R11B and R11C bonded to the same nitrogen atom may optionally be joined to form a R11CF-substituted or unsubstituted 3 to 6 membered heterocycloalkyl or R11CF-substituted or unsubstituted 5 to 6 membered heteroaryl.


In embodiments, R11D is independently hydrogen, halogen, —CF3, —CCl3, —CBr3, —CI3, —CN, —OH, —NH2, —COOH, —CONH2, —NO2, —SH, —SO3H, —SO4H, —SO2NH2, —NHNH2, —ONH2, —NHC(O)NHNH2, —NHC(O)NH2, —NHSO2H, —NHC(O)H, —NHC(O)OH, —NHOH, —OCF3, —OCCl3, —OCBr3, —OCI3, —OCHF2, —OCHCl2, —OCHBr2, —OCHI2, R11DF-substituted or unsubstituted alkyl, R11DF-substituted or unsubstituted heteroalkyl, R11DF-substituted or unsubstituted cycloalkyl, R11DF-substituted or unsubstituted heterocycloalkyl, R11DF-substituted or unsubstituted aryl, or R11DF-substituted or unsubstituted heteroaryl. In embodiments, R11D is independently hydrogen, halogen, —CF3, —CCl3, —CBr3, —CI3, —CN, —OH, —NH2, —COOH, —CONH2, —NO2, —SH, —SO3H, —SO4H, —SO2NH2, —NHNH2, —ONH2, —NHC(O)NHNH2, —NHC(O)NH2, —NHSO2H, —NHC(O)H, —NHC(O)OH, —NHOH, —OCF3, —OCCl3, —OCBr3, —OCI3, —OCHF2, —OCHCl2, —OCHBr2, —OCHI2, R11DF-substituted or unsubstituted C1-C6 alkyl, R11DF-substituted or unsubstituted 2 to 6 membered heteroalkyl, R11DF-substituted or unsubstituted C3-C6 cycloalkyl, R11DF-substituted or unsubstituted 3 to 6 membered heterocycloalkyl, R11DF-substituted or unsubstituted phenyl, or R11DF-substituted or unsubstituted 5 to 6 membered heteroaryl.


In embodiments, R12A is independently hydrogen, halogen, —CF3, —CCl3, —CBr3, —CI3, —CN, —OH, —NH2, —COOH, —CONH2, —NO2, —SH, —SO3H, —SO4H, —SO2NH2, —NHNH2, —ONH2, —NHC(O)NHNH2, —NHC(O)NH2, —NHSO2H, —NHC(O)H, —NHC(O)OH, —NHOH, —OCF3, —OCCl3, —OCBr3, —OCI3, —OCHF2, —OCHCl2, —OCHBr2, —OCHI2, R12AF-substituted or unsubstituted alkyl, R12AF-substituted or unsubstituted heteroalkyl, R12AF-substituted or unsubstituted cycloalkyl, R12AF-substituted or unsubstituted heterocycloalkyl, R12AF-substituted or unsubstituted aryl, or R12AF-substituted or unsubstituted heteroaryl. In embodiments, R12A is independently hydrogen, halogen, —CF3, —CCl3, —CBr3, —CI3, —CN, —OH, —NH2, —COOH, —CONH2, —NO2, —SH, —SO3H, —SO4H, —SO2NH2, —NHNH2, —ONH2, —NHC(O)NHNH2, —NHC(O)NH2, —NHSO2H, —NHC(O)H, —NHC(O)OH, —NHOH, —OCF3, —OCCl3, —OCBr3, —OCI3, —OCHF2, —OCHCl2, —OCHBr2, —OCHI2, R12AF-substituted or unsubstituted C1-C6 alkyl, R12AF-substituted or unsubstituted 2 to 6 membered heteroalkyl, R12AF-substituted or unsubstituted C3-C6 cycloalkyl, R12AF-substituted or unsubstituted 3 to 6 membered heterocycloalkyl, R12AF-substituted or unsubstituted phenyl, or R12AF-substituted or unsubstituted 5 to 6 membered heteroaryl.


In embodiments, R12B is independently hydrogen, halogen, —CF3, —CCl3, —CBr3, —CI3, —CN, —OH, —NH2, —COOH, —CONH2, —NO2, —SH, —SO3H, —SO4H, —SO2NH2, —NHNH2, —ONH2, —NHC(O)NHNH2, —NHC(O)NH2, —NHSO2H, —NHC(O)H, —NHC(O)OH, —NHOH, —OCF3, —OCCl3, —OCBr3, —OCI3, —OCHF2, —OCHCl2, —OCHBr2, —OCHI2, R12BF-substituted or unsubstituted alkyl, R12BF-substituted or unsubstituted heteroalkyl, R12BF-substituted or unsubstituted cycloalkyl, R12BF-substituted or unsubstituted heterocycloalkyl, R12BF-substituted or unsubstituted aryl, or R12BF-substituted or unsubstituted heteroaryl. In embodiments, R12B is independently hydrogen, halogen, —CF3, —CCl3, —CBr3, —CI3, —CN, —OH, —NH2, —COOH, —CONH2, —NO2, —SH, —SO3H, —SO4H, —SO2NH2, —NHNH2, —ONH2, —NHC(O)NHNH2, —NHC(O)NH2, —NHSO2H, —NHC(O)H, —NHC(O)OH, —NHOH, —OCF3, —OCCl3, —OCBr3, —OCI3, —OCHF2, —OCHCl2, —OCHBr2, —OCHI2, R12BF-substituted or unsubstituted C1-C6 alkyl, R12BF-substituted or unsubstituted 2 to 6 membered heteroalkyl, R12BF-substituted or unsubstituted C3-C6 cycloalkyl, R12BF-substituted or unsubstituted 3 to 6 membered heterocycloalkyl, R12BF-substituted or unsubstituted phenyl, or R12BF-substituted or unsubstituted 5 to 6 membered heteroaryl.


In embodiments, R12C is independently hydrogen, halogen, —CF3, —CCl3, —CBr3, —CI3, —CN, —OH, —NH2, —COOH, —CONH2, —NO2, —SH, —SO3H, —SO4H, —SO2NH2, —NHNH2, —ONH2, —NHC(O)NHNH2, —NHC(O)NH2, —NHSO2H, —NHC(O)H, —NHC(O)OH, —NHOH, —OCF3, —OCCl3, —OCBr3, —OCI3, —OCHF2, —OCHCl2, —OCHBr2, —OCHI2, R12CF-substituted or unsubstituted alkyl, R12CF-substituted or unsubstituted heteroalkyl, R12CF-substituted or unsubstituted cycloalkyl, R12CF-substituted or unsubstituted heterocycloalkyl, R12CF-substituted or unsubstituted aryl, or R12CF-substituted or unsubstituted heteroaryl. In embodiments, R12C is independently hydrogen, halogen, —CF3, —CCl3, —CBr3, —CI3, —CN, —OH, —NH2, —COOH, —CONH2, —NO2, —SH, —SO3H, —SO4H, —SO2NH2, —NHNH2, —ONH2, —NHC(O)NHNH2, —NHC(O)NH2, —NHSO2H, —NHC(O)H, —NHC(O)OH, —NHOH, —OCF3, —OCCl3, —OCBr3, —OCI3, —OCHF2, —OCHCl2, —OCHBr2, —OCHI2, R12CF-substituted or unsubstituted C1-C6 alkyl, R12CF-substituted or unsubstituted 2 to 6 membered heteroalkyl, R12CF-substituted or unsubstituted C3-C6 cycloalkyl, R12CF-substituted or unsubstituted 3 to 6 membered heterocycloalkyl, R12CF-substituted or unsubstituted phenyl, or R12CF-substituted or unsubstituted 5 to 6 membered heteroaryl. R12B and R12C bonded to the same nitrogen atom may optionally be joined to form a R12CF-substituted or unsubstituted 3 to 6 membered heterocycloalkyl or R12CF-substituted or unsubstituted 5 to 6 membered heteroaryl.


In embodiments, R12D is independently hydrogen, halogen, —CF3, —CCl3, —CBr3, —CI3, —CN, —OH, —NH2, —COOH, —CONH2, —NO2, —SH, —SO3H, —SO4H, —SO2NH2, —NHNH2, —ONH2, —NHC(O)NHNH2, —NHC(O)NH2, —NHSO2H, —NHC(O)H, —NHC(O)OH, —NHOH, —OCF3, —OCCl3, —OCBr3, —OCI3, —OCHF2, —OCHCl2, —OCHBr2, —OCHI2, R12DF-substituted or unsubstituted alkyl, R12DF-substituted or unsubstituted heteroalkyl, R12DF-substituted or unsubstituted cycloalkyl, R12DF-substituted or unsubstituted heterocycloalkyl, R12DF-substituted or unsubstituted aryl, or R12DF-substituted or unsubstituted heteroaryl. In embodiments, R12D is independently hydrogen, halogen, —CF3, —CCl3, —CBr3, —CI3, —CN, —OH, —NH2, —COOH, —CONH2, —NO2, —SH, —SO3H, —SO4H, —SO2NH2, —NHNH2, —ONH2, —NHC(O)NHNH2, —NHC(O)NH2, —NHSO2H, —NHC(O)H, —NHC(O)OH, —NHOH, —OCF3, —OCCl3, —OCBr3, —OCI3, —OCHF2, —OCHCl2, —OCHBr2, —OCHI2, R12DF-substituted or unsubstituted C1-C6 alkyl, R12DF-substituted or unsubstituted 2 to 6 membered heteroalkyl, R12DF-substituted or unsubstituted C3-C6 cycloalkyl, R12DF-substituted or unsubstituted 3 to 6 membered heterocycloalkyl, R12DF-substituted or unsubstituted phenyl, or R12DF-substituted or unsubstituted 5 to 6 membered heteroaryl.


In embodiments, R13A is independently hydrogen, halogen, —CF3, —CCl3, —CBr3, —CI3, —CN, —OH, —NH2, —COOH, —CONH2, —NO2, —SH, —SO3H, —SO4H, —SO2NH2, —NHNH2, —ONH2, —NHC(O)NHNH2, —NHC(O)NH2, —NHSO2H, —NHC(O)H, —NHC(O)OH, —NHOH, —OCF3, —OCCl3, —OCBr3, —OCI3, —OCHF2, —OCHCl2, —OCHBr2, —OCHI2, R13AF-substituted or unsubstituted alkyl, R13AF-substituted or unsubstituted heteroalkyl, R13AF-substituted or unsubstituted cycloalkyl, R13AF-substituted or unsubstituted heterocycloalkyl, R13AF-substituted or unsubstituted aryl, or R13AF-substituted or unsubstituted heteroaryl. In embodiments, R13A is independently hydrogen, halogen, —CF3, —CCl3, —CBr3, —CI3, —CN, —OH, —NH2, —COOH, —CONH2, —NO2, —SH, —SO3H, —SO4H, —SO2NH2, —NHNH2, —ONH2, —NHC(O)NHNH2, —NHC(O)NH2, —NHSO2H, —NHC(O)H, —NHC(O)OH, —NHOH, —OCF3, —OCCl3, —OCBr3, —OCI3, —OCHF2, —OCHCl2, —OCHBr2, —OCHI2, R13AF-substituted or unsubstituted C1-C6 alkyl, R13AF-substituted or unsubstituted 2 to 6 membered heteroalkyl, R13AF-substituted or unsubstituted C3-C6 cycloalkyl, R13AF-substituted or unsubstituted 3 to 6 membered heterocycloalkyl, R13AF-substituted or unsubstituted phenyl, or R13AF-substituted or unsubstituted 5 to 6 membered heteroaryl.


In embodiments, R13B is independently hydrogen, halogen, —CF3, —CCl3, —CBr3, —CI3, —CN, —OH, —NH2, —COOH, —CONH2, —NO2, —SH, —SO3H, —SO4H, —SO2NH2, —NHNH2, —ONH2, —NHC(O)NHNH2, —NHC(O)NH2, —NHSO2H, —NHC(O)H, —NHC(O)OH, —NHOH, —OCF3, —OCCl3, —OCBr3, —OCI3, —OCHF2, —OCHCl2, —OCHBr2, —OCHI2, R13BF-substituted or unsubstituted alkyl, R13BF-substituted or unsubstituted heteroalkyl, R13BF-substituted or unsubstituted cycloalkyl, R13BF-substituted or unsubstituted heterocycloalkyl, R13BF-substituted or unsubstituted aryl, or R13BF-substituted or unsubstituted heteroaryl. In embodiments, R13B is independently hydrogen, halogen, —CF3, —CCl3, —CBr3, —CI3, —CN, —OH, —NH2, —COOH, —CONH2, —NO2, —SH, —SO3H, —SO4H, —SO2NH2, —NHNH2, —ONH2, —NHC(O)NHNH2, —NHC(O)NH2, —NHSO2H, —NHC(O)H, —NHC(O)OH, —NHOH, —OCF3, —OCCl3, —OCBr3, —OCI3, —OCHF2, —OCHCl2, —OCHBr2, —OCHI2, R13BF-substituted or unsubstituted C1-C6 alkyl, R13BF-substituted or unsubstituted 2 to 6 membered heteroalkyl, R13BF-substituted or unsubstituted C3-C6 cycloalkyl, R13BF-substituted or unsubstituted 3 to 6 membered heterocycloalkyl, R13BF-substituted or unsubstituted phenyl, or R13BF-substituted or unsubstituted 5 to 6 membered heteroaryl.


In embodiments, R13C is independently hydrogen, halogen, —CF3, —CCl3, —CBr3, —CI3, —CN, —OH, —NH2, —COOH, —CONH2, —NO2, —SH, —SO3H, —SO4H, —SO2NH2, —NHNH2, —ONH2, —NHC(O)NHNH2, —NHC(O)NH2, —NHSO3H, —NHC(O)H, —NHC(O)OH, —NHOH, —OCF3, —OCCl3, —OCBr3, —OCI3, —OCHF2, —OCHCl2, —OCHBr2, —OCHI2, R13CF-substituted or unsubstituted alkyl, R13CF-substituted or unsubstituted heteroalkyl, R13CF-substituted or unsubstituted cycloalkyl, R13CF-substituted or unsubstituted heterocycloalkyl, R13CF-substituted or unsubstituted aryl, or R13CF-substituted or unsubstituted heteroaryl. In embodiments, R13C is independently hydrogen, halogen, —CF3, —CCl3, —CBr3, —CI3, —CN, —OH, —NH2, —COOH, —CONH2, —NO2, —SH, —SO3H, —SO4H, —SO2NH2, —NHNH2, —ONH2, —NHC(O)NHNH2, —NHC(O)NH2, —NHSO2H, —NHC(O)H, —NHC(O)OH, —NHOH, —OCF3, —OCCl3, —OCBr3, —OCI3, —OCHF2, —OCHCl2, —OCHBr2, —OCHI2, R13CF-substituted or unsubstituted C1-C6 alkyl, R13CF-substituted or unsubstituted 2 to 6 membered heteroalkyl, R13CF-substituted or unsubstituted C3-C6 cycloalkyl, R13CF-substituted or unsubstituted 3 to 6 membered heterocycloalkyl, R13CF-substituted or unsubstituted phenyl, or R13CF-substituted or unsubstituted 5 to 6 membered heteroaryl. R13B and R13C bonded to the same nitrogen atom may optionally be joined to form a R13CF-substituted or unsubstituted 3 to 6 membered heterocycloalkyl or R13CF-substituted or unsubstituted 5 to 6 membered heteroaryl.


In embodiments, R13D is independently hydrogen, halogen, —CF3, —CCl3, —CBr3, —CI3, —CN, —OH, —NH2, —COOH, —CONH2, —NO2, —SH, —SO3H, —SO4H, —SO2NH2, —NHNH2, —ONH2, —NHC(O)NHNH2, —NHC(O)NH2, —NHSO2H, —NHC(O)H, —NHC(O)OH, —NHOH, —OCF3, —OCCl3, —OCBr3, —OCI3, —OCHF2, —OCHCl2, —OCHBr2, —OCHI2, R13DF-substituted or unsubstituted alkyl, R13DF-substituted or unsubstituted heteroalkyl, R13DF-substituted or unsubstituted cycloalkyl, R13DF-substituted or unsubstituted heterocycloalkyl, R13DF-substituted or unsubstituted aryl, or R13DF-substituted or unsubstituted heteroaryl. In embodiments, R13D is independently hydrogen, halogen, —CF3, —CCl3, —CBr3, —CI3, —CN, —OH, —NH2, —COOH, —CONH2, —NO2, —SH, —SO3H, —SO4H, —SO2NH2, —NHNH2, —ONH2, —NHC(O)NHNH2, —NHC(O)NH2, —NHSO2H, —NHC(O)H, —NHC(O)OH, —NHOH, —OCF3, —OCCl3, —OCBr3, —OCI3, —OCHF2, —OCHCl2, —OCHBr2, —OCHI2, R13DF-substituted or unsubstituted C1-C6 alkyl, R13DF-substituted or unsubstituted 2 to 6 membered heteroalkyl, R13DF-substituted or unsubstituted C3-C6 cycloalkyl, R13DF-substituted or unsubstituted 3 to 6 membered heterocycloalkyl, R13DF-substituted or unsubstituted phenyl, or R13DF-substituted or unsubstituted 5 to 6 membered heteroaryl.


In embodiments, R14A is independently hydrogen, halogen, —CF3, —CCl3, —CBr3, —CI3, —CN, —OH, —NH2, —COOH, —CONH2, —NO2, —SH, —SO3H, —SO4H, —SO2NH2, —NHNH2, —ONH2, —NHC(O)NHNH2, —NHC(O)NH2, —NHSO3H, —NHC(O)H, —NHC(O)OH, —NHOH, —OCF3, —OCCl3, —OCBr3, —OCI3, —OCHF2, —OCHCl2, —OCHBr2, —OCHI2, R14AF-substituted or unsubstituted alkyl, R14AF-substituted or unsubstituted heteroalkyl, R14AF-substituted or unsubstituted cycloalkyl, R14AF-substituted or unsubstituted heterocycloalkyl, R14AF-substituted or unsubstituted aryl, or R14AF-substituted or unsubstituted heteroaryl. In embodiments, R14A is independently hydrogen, halogen, —CF3, —CCl3, —CBr3, —CI3, —CN, —OH, —NH2, —COOH, —CONH2, —NO2, —SH, —SO3H, —SO4H, —SO2NH2, —NHNH2, —ONH2, —NHC(O)NHNH2, —NHC(O)NH2, —NHSO2H, —NHC(O)H, —NHC(O)OH, —NHOH, —OCF3, —OCCl3, —OCBr3, —OCI3, —OCHF2, —OCHCl2, —OCHBr2, —OCHI2, R14AF-substituted or unsubstituted C1-C6 alkyl, R14AF-substituted or unsubstituted 2 to 6 membered heteroalkyl, R14AF-substituted or unsubstituted C3-C6 cycloalkyl, R14AF-substituted or unsubstituted 3 to 6 membered heterocycloalkyl, R14AF-substituted or unsubstituted phenyl, or R14AF-substituted or unsubstituted 5 to 6 membered heteroaryl.


In embodiments, R14B is independently hydrogen, halogen, —CF3, —CCl3, —CBr3, —CI3, —CN, —OH, —NH2, —COOH, —CONH2, —NO2, —SH, —SO3H, —SO4H, —SO2NH2, —NHNH2, —ONH2, —NHC(O)NHNH2, —NHC(O)NH2, —NHSO2H, —NHC(O)H, —NHC(O)OH, —NHOH, —OCF3, —OCCl3, —OCBr3, —OCI3, —OCHF2, —OCHCl2, —OCHBr2, —OCHI2, R14BF-substituted or unsubstituted alkyl, R14BF-substituted or unsubstituted heteroalkyl, R14BF-substituted or unsubstituted cycloalkyl, R14BF-substituted or unsubstituted heterocycloalkyl, R14BF-substituted or unsubstituted aryl, or R14BF-substituted or unsubstituted heteroaryl. In embodiments, R14B is independently hydrogen, halogen, —CF3, —CCl3, —CBr3, —CI3, —CN, —OH, —NH2, —COOH, —CONH2, —NO2, —SH, —SO3H, —SO4H, —SO2NH2, —NHNH2, —ONH2, —NHC(O)NHNH2, —NHC(O)NH2, —NHSO2H, —NHC(O)H, —NHC(O)OH, —NHOH, —OCF3, —OCCl3, —OCBr3, —OCI3, —OCHF2, —OCHCl2, —OCHBr2, —OCHI2, R14BF-substituted or unsubstituted C1-C6 alkyl, R14BF-substituted or unsubstituted 2 to 6 membered heteroalkyl, R14BF-substituted or unsubstituted C3-C6 cycloalkyl, R14BF-substituted or unsubstituted 3 to 6 membered heterocycloalkyl, R14BF-substituted or unsubstituted phenyl, or R14BF-substituted or unsubstituted 5 to 6 membered heteroaryl.


In embodiments, R14C is independently hydrogen, halogen, —CF3, —CCl3, —CBr3, —CI3, —CN, —OH, —NH2, —COOH, —CONH2, —NO2, —SH, —SO3H, —SO4H, —SO2NH2, —NHNH2, —ONH2, —NHC(O)NHNH2, —NHC(O)NH2, —NHSO2H, —NHC(O)H, —NHC(O)OH, —NHOH, —OCF3, —OCCl3, —OCBr3, —OCI3, —OCHF2, —OCHCl2, —OCHBr2, —OCHI2, R14CF-substituted or unsubstituted alkyl, R14CF-substituted or unsubstituted heteroalkyl, R14CF-substituted or unsubstituted cycloalkyl, R14CF-substituted or unsubstituted heterocycloalkyl, R14CF-substituted or unsubstituted aryl, or R14CF-substituted or unsubstituted heteroaryl. In embodiments, R14C is independently hydrogen, halogen, —CF3, —CCl3, —CBr3, —CI3, —CN, —OH, —NH2, —COOH, —CONH2, —NO2, —SH, —SO3H, —SO4H, —SO2NH2, —NHNH2, —ONH2, —NHC(O)NHNH2, —NHC(O)NH2, —NHSO2H, —NHC(O)H, —NHC(O)OH, —NHOH, —OCF3, —OCCl3, —OCBr3, —OCI3, —OCHF2, —OCHCl2, —OCHBr2, —OCHI2, R14CF-substituted or unsubstituted C1-C6 alkyl, R14CF-substituted or unsubstituted 2 to 6 membered heteroalkyl, R14CF-substituted or unsubstituted C3-C6 cycloalkyl, R14CF-substituted or unsubstituted 3 to 6 membered heterocycloalkyl, R14CF-substituted or unsubstituted phenyl, or R14CF-substituted or unsubstituted 5 to 6 membered heteroaryl. R14B and R14C bonded to the same nitrogen atom may optionally be joined to form a R14CF-substituted or unsubstituted 3 to 6 membered heterocycloalkyl or R14CF-substituted or unsubstituted 5 to 6 membered heteroaryl.


In embodiments, R14D is independently hydrogen, halogen, —CF3, —CCl3, —CBr3, —CI3, —CN, —OH, —NH2, —COOH, —CONH2, —NO2, —SH, —SO3H, —SO4H, —SO2NH2, —NHNH2, —ONH2, —NHC(O)NHNH2, —NHC(O)NH2, —NHSO2H, —NHC(O)H, —NHC(O)OH, —NHOH, —OCF3, —OCCl3, —OCBr3, —OCI3, —OCHF2, —OCHCl2, —OCHBr2, —OCHI2, R14DF-substituted or unsubstituted alkyl, R14DF-substituted or unsubstituted heteroalkyl, R14DF-substituted or unsubstituted cycloalkyl, R14DF-substituted or unsubstituted heterocycloalkyl, R14DF-substituted or unsubstituted aryl, or R14DF-substituted or unsubstituted heteroaryl. In embodiments, R14D is independently hydrogen, halogen, —CF3, —CCl3, —CBr3, —CI3, —CN, —OH, —NH2, —COOH, —CONH2, —NO2, —SH, —SO3H, —SO4H, —SO2NH2, —NHNH2, —ONH2, —NHC(O)NHNH2, —NHC(O)NH2, —NHSO2H, —NHC(O)H, —NHC(O)OH, —NHOH, —OCF3, —OCCl3, —OCBr3, —OCI3, —OCHF2, —OCHCl2, —OCHBr2, —OCHI2, R14DF-substituted or unsubstituted C1-C6 alkyl, R14DF-substituted or unsubstituted 2 to 6 membered heteroalkyl, R14DF-substituted or unsubstituted C3-C6 cycloalkyl, R14DF-substituted or unsubstituted 3 to 6 membered heterocycloalkyl, R14DF-substituted or unsubstituted phenyl, or R14DF-substituted or unsubstituted 5 to 6 membered heteroaryl.


In embodiments, L1 is independently a bond, —O—, —S—, —NR15— (e.g —NH—), —C(O)NR15—, —C(O)—, R17E-substituted or unsubstituted alkylene or R17E-substituted or unsubstituted heteroalkylene. In embodiments, L1 is independently —O—, —S—, —NH—, —C(O)NR15—, —C(O)—, R17E-substituted or unsubstituted C1-C3 alkylene or R17E-substituted or unsubstituted 2 to 3 membered heteroalkylene.


R17E is independently oxo, halogen, —CF3, —CCl3, —CBr3, —CI3, —CN, —OH, —NH2, —COOH, —CONH2, —NO2, —SH, —SO3H, —SO4H, —SO2NH2, —NHNH2, —ONH2, —NHC(O)NHNH2, —NHC(O)NH2, —NHSO2H, —NHC(O)H, —NHC(O)OH, —NHOH, —OCF3, —OCCl3, —OCBr3, —OCI3, —OCHF2, —OCHCl2, —OCHBr2, —OCHI2, R17F-substituted or unsubstituted alkyl, R17F-substituted or unsubstituted heteroalkyl, R17F-substituted or unsubstituted cycloalkyl, R17F-substituted or unsubstituted heterocycloalkyl, R17F-substituted or unsubstituted aryl, or R17F-substituted or unsubstituted heteroaryl. In embodiments, R17E is independently oxo, halogen, —CF3, —CCl3, —CBr3, —CI3, —CN, —OH, —NH2, —COOH, —CONH2, —NO2, —SH, —SO3H, —SO4H, —SO2NH2, —NHNH2, —ONH2, —NHC(O)NHNH2, —NHC(O)NH2, —NHSO2H, —NHC(O)H, —NHC(O)OH, —NHOH, —OCF3, —OCCl3, —OCBr3, —OCI3, —OCHF2, —OCHCl2, —OCHBr2, —OCHI2, R17F-substituted or unsubstituted C1-C6 alkyl, R17F-substituted or unsubstituted 2 to 6 membered heteroalkyl, R17F-substituted or unsubstituted C3-C6 cycloalkyl, R17F-substituted or unsubstituted 3 to 6 membered heterocycloalkyl, R17F-substituted or unsubstituted phenyl, or R17F-substituted or unsubstituted 5 to 6 membered heteroaryl.


R1F, R2F, R3F, R4F, R5F, R6F, R7F, R8F, R9F, R10F, R11F, R12F, R13F, R14F, R15F, R17F, R1AF, R1BFR1CF, R1DF, R2AF, R2BF, R2CF, R2DF, R3AF, R3BF, R3CF, R3DF, R4AF, R4BF, R4CF, R4DF, R5AF, R5BF, R5CFR5DF, R6AF, R6BF, R6CF, R6DF, R7AF, R7BF, R7CF, R7DF, R8AF, R8BF, R8CF, R8DF, R9AF, R9BF, R9CF, R9DFR10AF, R10BF, R10CF, R10DF, R11AF, R11BF, R11CF, R11DF, R12AF, R12BF, R12CF, R12DF, R13AF, R13BF, R13CFR13DF, R14AF, R14BF, R14CF and R14DF are independently oxo, halogen, —CF3, —CN, —OH, —NH2, —COOH, —CONH2, —NO2, —SH, —SO3H, —SO4H, —SO2NH2, —NHNH2, —ONH2, —NHC═(O)NHNH2, —NHC═(O)NH2, —NHSO2H, —NHC═(O)H, —NHC(O)—OH, —NHOH, —OCF3, —OCHF2, unsubstituted alkyl, unsubstituted heteroalkyl, unsubstituted cycloalkyl, unsubstituted heterocycloalkyl, unsubstituted aryl, or unsubstituted heteroaryl. In embodiments, R1F, R2F, R3F, R4F, R5F, R6F, R7F, R8F, R9F, R10F, R11F, R12F, R13F, R14F, R15F, R17F, R1AF, R1BF, R1CF, R1DF, R2AF, R2BF, R2CF, R2DF, R3AF, R3BF, R3CF, R3DF, R4AF, R4BF, R4CF, R4DF, R5AF, R5BFR5CF, R5DF, R6AF, R6BF, R6CF, R6DF, R7AF, R7BF, R7CF, R7DF, R8AF, R8BF, R8CF, R8DF, R9AF, R9BF, R9CFR9DF, R10AF, R10BF, R10CF, R10DF, R11AF, R11BF, R11CF, R11DF, R12AF, R12BF, R12CF, R12DF, R13AF, R13BFR13CF, R13DF, R14AF, R14BF, R14CF and R14DF are independently oxo, halogen, —CF3, —CN, —OH, —NH2, —COOH, —CONH2, —NO2, —SH, —SO3H, —SO4H, —SO2NH2, —NHNH2, —ONH2, —NHC═(O)NHNH2, —NHC═(O)NH2, —NHSO2H, —NHC═(O)H, —NHC(O)—OH, —NHOH, —OCF3, —OCHF2, unsubstituted C1-C6 alkyl, unsubstituted 2 to 6 membered heteroalkyl, unsubstituted C3-C6 cycloalkyl, unsubstituted 3 to 6 membered heterocycloalkyl, unsubstituted phenyl, or unsubstituted 5 to 6 membered heteroaryl.


In some embodiments, a compound as described herein may include multiple instances of R1, R2, R3, R4, R5, R6, R7, R8, R9, R10, R11, R12, R13, R14, R15, R17, m1, m2, m3, m4, m5, m6, m7, m8, m9, m10, m1, m12, m13, m14, n1, n2, n3, n4, n5, n6, n7, n8, n9, n10, n11, n12, n13, n14, v1, v2, v3, v4, v5, v6, v7, v8, v9, v10, v11, v12, v13, v14, and/or other variables. In such embodiments, each variable may optional be different and be appropriately labeled to distinguish each group for greater clarity. For example, where each R1, R2, R3, R4, R5, R6, R7, R8, R9, R10, R, R12, R13, R14, R15, R17, m1, m2, m3, m4, m5, m6, m7, m8, m9, m10, m11, m12, m13, m14, n1, n2, n3, n4, n5, n6, n7, n8, n9, n10, n11, n12, n13, n14, v1, v2, v3, v4, v5, v6, v7, v8, v9, v10, v11, v12, v13 and/or v14 is different, they may be referred to, for example, as R1,1, R1,2, R1,3, R1,4, R1,5, R1,6, R1,7, R2,1, R2,2, R2,3, R2,4, R2,5, R2,6, R2,7, R3,1, R3,2, R3,3, R3,4, R3,5, R3,6, R3,7, R4,1, R4,2, R4,3, R4,4, R4,5, R4,6, R4,7, R5,1, R5,2, R5,3, R5,4, R5,5, R5,6, R5,7, R6,1, R6,2, R6,3, R6,4, R6,5, R6,6, R7,1, R7,2, R7,3, R7,4, R7,5, R7,6, R8,1, R8,2, R8,3, R8,4, R8,5, R8,6, R9,1, R9,2, R9,3, R9,4, R9,5, R9,6, R10,1, R10,2, R10,3, R10,4, R10,5, R10,6, R11,1, R11,2, R11,3, R11,4, R11,5, R11,6, R12,1, R12,2, R12,3, R12,4, R12,5, R12,6, R13,1, R13,2, R13,3, R13,4, R13,5, R13,6, R14,1, R14,2, R14,3, R14,4, R14,5, R14,6, R15,1, R15,2, R15,3, R15,4, R15,5, R15,6, R17,1, R17,2, R17,3, R17,4, R17,5, R17,6, m11, m12, m13, m14, m15, m16, m21, m22, m23, m24, m25, m26, m31, m32, m33, m34, m35, m36, m41, m42, m43, m44, m45, m46, m51, m52, m53, m54, m55, m56, m61, m62, m63, m64, m65, m66, m71, m72, m73, m74, m75, m76, m81, m82, m83, m84, m85, m86, m91, m92, m93, m94, m95, m96, m101, m102, m103, m104, m105, m106, m111, m112, m113, m114 m115, m116, m121, m122, m123, m124, m125, m126, m131, m132, m133, m134, m135, m136, m141, m142 m143 m144 m145 m146 n11, n12, n13, n14, n15, n16, n21, n22, n23, n24, n25, n26, n31, n32, n33, n34, n35, n36, n41, n42 n43 n44 n45 n46, n51 n52, n53, n54, n55, n56, n61, n62, n63, n64, n65, n66, n71, n72, n73, n74, n75, n76, n81, n82 n83 n84, n85, n86, n91, n92, n93, n94, n95, n96, n101, n102, n103, n104, n105, n106, n111, n112, n113, n114, n115, n116, n121, n122, n123, n124, n125, n126, n131, n132, n133, n134, n135, n136, n141, n142 n143 n144, n145, n146, v11, v12, v13, v14, v15, v16, v21, v22, v23, v24, v25, v26, v31, v32, v33, v34, v35, v36, v41, v42 v43 v44 v45 v46, v51, v52, v53, v54, v55, v56, v61, v62, v63, v64, v65, v66, v71, v72 v73 v74 v75, v76, v81, v82, v83, v84, v85, v86, v91, v92, v93, v94, v95, v96, v101, v102, v103, v104, v105, v106, v111, v112, v113, v114, v115, v116, v121, v122, v123, v124, v125, v126, v131, v132, v133, v134, v135, v136, v141, v142, v143, v144, v145, v146, wherein the definition of R1 is assumed by R1,1, R1,2, R1,3, R1,4, R1,5, R1,6, R1,7, the definition of R2 is assumed by R2,1, R2,2, R2,3, R2,4, R2,5, R2,6, R2,7, the definition of R3 is assumed by R3,1, R3,2, R3,3, R3,4, R3,5, R3,6, R3,7, the definition of R4 is assumed by R4,1, R4,2, R4,3, R4,4, R4,5, R4,6, R4,7, the definition of R5 is assumed by R5,1, R5,2, R5,3, R5,4, R5,5, R5,6, R5,7, the definition of R6 is assumed by R6,1, R6,2, R6,3, R6,4, R6,5, R6,6, the definition of R7 is assumed by R7,1, R7,2, R7,3, R7,4, R7,5, R7,6, the definition of R8 is assumed by R8,1, R8,2, R8,3, R8,4, R8,5, R8,6, the definition of R9 is assumed by R9,1, R9,2, R9,3, R9,4, R9,5, R9,6, the definition of R10 is assumed by R10,1, R10,2, R10,3, R10,4, R10,5, R10,6, the definition of R11 is assumed by R11,1, R11,2, R11,3, R11,4, R11,5, R11,6, the definition of R12 is assumed by R12,1, R12,2, R12,3, R12,4, R12,5, R12,6, the definition of R13 is assumed by R13,1, R13,2, R13,3, R13,4, R13,5, R13,6, the definition of R14 is assumed by R14,1, R14,2, R14,3, R14,4, R14,5, R14,6, the definition of R15E is assumed by R15,1, R15,2, R15,3, R15,4, R15,5, R15,6, the definition of R17E is assumed by R17,1, R17,2, R17,3, R17,4, R17,5, R17,6 the definition of m1 is assumed by m11, m12, m13, m14, m15, m16, the definition of m2 is assumed by m21, m22, m23, m24, m25, m26, the definition of m3 is assumed by m31, m32, m33, m34, m35, m36, the definition of m4 is assumed by m41, m42, m43, m44, m45, m46, the definition of m5 is assumed by m51, m52, m53, m54, m55, m56, the definition of m6 is assumed by m61, m62, m63, m64, m65, m66, the definition of m7 is assumed by m71, m72, m73, m74, m75, m76, the definition of m8 is assumed by m81, m82, m83, m84, m85, m86, the definition of m9 is assumed by m91, m92, m93, m94, m95, m96, the definition of m10 is assumed by m101, m102, m103, m104, m105, m106, the definition of m11 is assumed by m111, m112, m113, m114, m115, m116, the definition of m12 is assumed by m121, m122, m123, m124, m125, m126, the definition of m13 is assumed by m131, m132, m133, m134, m135, m136, the definition of m14 is assumed by m141, m142, m143, m144, m145, m146, the definition of n1 is assumed by n111, n112, n113, n114, n115, n116, the definition of n2 is assumed by n21, n22, n23, n24, n25, n26, the definition of n3 is assumed by n31, n32, n33, n34, n35, n36, the definition of n4 is assumed by n41, n42, n43, n44, n45, n46, the definition of n5 is assumed by n51, n52, n53, n54, n55, n56, the definition of n6 is assumed by n61, n62, n63, n64, n65, n66, the definition of n7 is assumed by n71, n72, n73, n74, n75, n76, the definition of n8 is assumed by n81, n82, n83, n84, n85, n86, the definition of n9 is assumed by n91, n92, n93, n94, n95, n96, the definition of n10 is assumed by n101, n102 n103, n104, n105, n106, the definition of n11 is assumed by n111, n112, n113, n114, n115, n116, the definition of n12 is assumed by n121, n122, n123, n124, n125, n126, the definition of n13 is assumed by n131, n132, n133, n134, n135, n136, the definition of n14 is assumed by n141, n142, n143, n144, n145, n146, the definition of v1 is assumed by v11, v12, v13, v14, v15, v16, the definition of v2 is assumed by v21, v22, v23, v24, v25, v26, the definition of v4 is assumed by v31, v32, v33, v34, v35, v36, the definition of v4 is assumed by v41, v42, v43, v44, v45, v46, the definition of v5 is assumed by v51, v52, v53, v54, v55, v56, the definition of v6 is assumed by v61, v62, v63, v64, v65, v66, the definition of v7 is assumed by v71, v72, v73, v74, v75, v76, the definition of v8 is assumed by v81, v82, v83, v84, v85, v86, the definition of v9 is assumed by v91, v92, v93, v94, v95, v96, the definition of v10 is assumed by v101, v102, v103, v104, v105, v106, the definition of v11 is assumed by v111, v112, v113, v114, v115, v116, the definition of v12 is assumed by v121, v122, v123, v124, v125, v126, the definition of v13 is assumed by v131, v132, v133, v134, v135, v136, and the definition of v14 is assumed by v141, v142, v143, v144, v145, v146.


The variables used within a definition of R1, R2, R3, R4, R5, R6, R7, R8, R9, R10, R11, R12, R13, R14, R15, R17, m1, m2, m3, m4, m5, m6, m7, m8, m9, m10, m11, m12, m13, m14, m15, m16, m17, n1, n2, n3, n4, n5, n6, n7, n8, n9, n10, n11, n12, n13, n14, n15, n16, n17, v1, v2, v3, v4, v5, v6, v1, v8, v9, v10, v11, v12, v13, v14 and/or other variables that appear at multiple instances and are different may similarly be appropriately labeled to distinguish each group for greater clarity.


In embodiments, R6, R7, R8 and R9 are hydrogen. In embodiments, R10, R11, R12, R13 and R14 are independently hydrogen. In embodiments, at least two of R1, R2, R3, R4, R5 are independently hydrogen. In embodiments, R1 is hydrogen, halogen, —CN, —NO2, —NR1BR1C, NR1BC(O)R1D, —C(O)OR1D or substituted or unsubstituted alkyl; R2 is hydrogen, halogen, —CN, —NO2, —NR2BR2C, NR2BC(O)R2D, —C(O)OR2D or substituted or unsubstituted alkyl; R3 is hydrogen, halogen, —CN, —NO2, —NR3BR3C, NR3BC(O)R3D′, —C(O)OR3D or substituted or unsubstituted alkyl; R4 is hydrogen, halogen, —CN, —NO2, —NR4BR4C, NR4BC(O)R4D′, —C(O)OR4D or substituted or unsubstituted alkyl; R5 is hydrogen, halogen, —CN, —NO2, —NR5BR5C, NR5BC(O)R5D′, —C(O)OR5D or substituted or unsubstituted alkyl. In embodiments, R1B, R2B, R3B, R4B, R5B, R1C, R2C, R3C, R4C, R5C, R1D, R2D, R3D, R4D and R5D are independently hydrogen or methyl. In embodiments, at least two of R1, R2, R4 and R5 are hydrogen; R3 is —NO2.


In embodiments, -L1-R20 is substituted or unsubstituted alkyl or substituted or unsubstituted heteroalkyl. In embodiments, -L1-R20 is substituted or unsubstituted alkyl. In embodiments, -L1-R20 is substituted or unsubstituted C2-C20 alkyl. In embodiments, -L1-R20 is substituted or unsubstituted C2-C10 alkyl. In embodiments, -L1-R20 is substituted or unsubstituted C2-C6 alkyl. In embodiments, -L1-R20 is substituted or unsubstituted C2-C4 alkyl. In embodiments, -L1-R20 is R10E-substituted or unsubstituted alkyl or R10E-substituted or unsubstituted heteroalkyl. In embodiments, -L1-R20 is R10E-substituted or unsubstituted alkyl. In embodiments, -L1-R20 is R10E-substituted or unsubstituted C2-C20 alkyl. In embodiments, -L1-R20 is R10E-substituted or unsubstituted C2-C10 alkyl. In embodiments, -L1-R20 is R10E-substituted or unsubstituted C1-C6 alkyl. In embodiments, -L1-R20 is R10E-substituted or unsubstituted C2-C5 alkyl. In embodiments, -L1-R20 is R10E-substituted or unsubstituted C2-C4 alkyl. In embodiments, L1 is —CH2—, R20 is R10E-substituted or unsubstituted C1-C3 alkyl. In embodiments, -L1 is —CH2—, R20 is R10E-substituted or unsubstituted methyl, ethyl, or ethenyl. In embodiments, -L1 is —CH2, R20 is methyl, ethyl, or ethenyl.


In embodiments, -L1-R20 is substituted or unsubstituted alkyl or substituted or unsubstituted heteroalkyl. In embodiments, -L1-R20 is unsubstituted alkyl. In embodiments, -L1-R20 is unsubstituted C2-C20 alkyl. In embodiments, -L1-R20 is unsubstituted C2-C10 alkyl. In embodiments, -L1-R20 is unsubstituted C2-C6 alkyl. In embodiments, -L1-R20 is unsubstituted C2-C4 alkyl. In embodiments, L1 is —CH2—, R20 is unsubstituted C1-C3 alkyl. In embodiments, L1 is —CH2—, R20 is methyl, ethyl, or ethenyl. In embodiments, L1 is —CH2, R20 is methyl, ethyl, or ethenyl. In embodiments, L1-R20 is




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In embodiments, when -L1 is —CH2—, R20 is substituted or unsubstituted methyl, ethyl, or ethenyl, R6, R7, R8 and R9 are independently hydrogen. In embodiments, R10, R11, R12, R13 and R14 are independently hydrogen. In embodiments, at least two of R1, R2, R4 and R5 are hydrogen. In embodiments, R6, R7, R8 and R9 are independently hydrogen or substituted or unsubstituted alkyl. In embodiments, R6, R7, R8 and R9 are independently hydrogen or unsubstituted alkyl. In embodiments, R6, R7, R8 and R9 are independently hydrogen or substituted or unsubstituted C1-C10 (e.g. C1-C5) alkyl. In embodiments, R6, R7, R8 and R9 are independently hydrogen or unsubstituted C1-C10 (e.g. C1-C5) alkyl. In embodiments, R6, R7, R8 and R9 are independently hydrogen. In embodiments, R10, R11, R12, R13 and R14 are independently hydrogen or substituted or unsubstituted alkyl. In embodiments, R10, R11, R12, R13 and R14 are independently hydrogen or unsubstituted alkyl. In embodiments, R10, R11, R12, R13 and R14 are independently hydrogen or substituted or unsubstituted C1-C10 (e.g. C1-C5) alkyl. In embodiments, R10, R11, R12, R13 and R14 are independently hydrogen or unsubstituted C1-C10 (e.g. C1-C5) alkyl. In embodiments, R10, R11, R12, R13 and R14 are independently hydrogen. In embodiments, at least two of R1, R2, R4 and R5 are hydrogen and R3 is —NO2.


In embodiments, L1 is substituted or unsubstituted alkylene. In embodiments, L1 is R1E-substituted or unsubstituted alkylene. In embodiments, L1 is substituted or unsubstituted C1-C3 alkylene. In embodiments, L1 is R1E-substituted or unsubstituted C1-C3 alkylene. In embodiments, L1 is —CH2— or —CH2CH2—. In embodiments, R20 is substituted or unsubstituted heteroaryl. In embodiments, R20 is R1E-substituted or unsubstituted heteroaryl. In embodiments, R20 is substituted or unsubstituted heteroaryl. In embodiments, R20 is R1E-substituted or unsubstituted pyridyl, thiophenyl or furanyl. In embodiments, R20 is pyridyl, thiophenyl or furanyl. In embodiments, the compound is formula IH:




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In embodiments, the compound is formula IJ:




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In embodiments, the compound is formula IK:




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In formulae IH, IJ and IK, R1, R2, R4, R5, R6, R7, R8, R9, R10, R11, R12, R13 and/or R14 are as described herein. In embodiments, R6, R7, R8 and R9 are hydrogen. In embodiments, R10, R11, R12, R13 and/or R14 are hydrogen.


In embodiments, when L1 is —CH2— and R20 is substituted or unsubstituted heteroaryl, R6, R7, R8 and R9 are hydrogen. In embodiments, at least one of R1, R2, R3, R4 and R5 is —NO2. In embodiments, one of R2, R3, R4 and R5 is —NO2. In embodiments, one of R2 and R3 is —NO2. In embodiments, at least two of R1, R2, R4 and R5 are hydrogen; and R3 is —NO2. In embodiments, R3 is —NO2. In embodiments, at least two of R1, R2, R4 and R5 are hydrogen; R3 is —NO2. In embodiments, R1, R4 and R5 are hydrogen and R2 or R3 is —NO2. In embodiments, R1, R2, R4 and R5 are hydrogen and R3 is —NO2.


In embodiments, the compound is:




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Further provided is a compound of Formula I:




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or a pharmaceutically acceptable salt thereof.


In embodiments, when R20 is substituted or unsubstituted phenyl, R6, R7, R8 and R9 are hydrogen, R3 is —N(O)m3 and m3 is 1 or 2, then R5 is not —NR5BR5C. In embodiments, when R20 is substituted or unsubstituted phenyl, R6, R7, R8 and R9 are hydrogen, R3 is —N(O)m3 and m3 is 2, then R5 is not —NR5BR5C. In embodiments, when R20 is substituted or unsubstituted phenyl, R6, R7, R8 and R9 are hydrogen and R3 is —NO2, then R5 is not —NR5BR5C. In embodiments, when R20 is substituted or unsubstituted phenyl, R6, R7, R8 and R9 are hydrogen and R3 is —NO2, then R5 is not —NH2. In embodiments, when R20 is substituted or unsubstituted phenyl, at least two of R6, R7, R8 and R9 are hydrogen and R3 is —NO2, then R5 is not —NH2. In embodiments, when R20 is substituted or unsubstituted phenyl, at least one of R6, R7, R8 and R9 are hydrogen and R3 is —NO2, then R5 is not —NH2. In embodiments, when R20 is substituted or unsubstituted phenyl, R6, R7, R8 and R9 are hydrogen and R3 is —NO2, then R5 is not —NH2. In embodiments, when R3 is —NO2 and R6, R7, R8 and R9 are hydrogen, then R5 is not —NH2.


In embodiments, when R20 is substituted or unsubstituted phenyl, R3 is —NO2 and R5 is —NH2, then at least one of R6, R7, R8 and R9 is not hydrogen. In embodiments, when R20 is substituted or unsubstituted phenyl, R3 is —NO2 and R5 is —NR5BR5C, then at least one of R6, R7, R8 and R9 is not hydrogen. In embodiments, when R20 is substituted or unsubstituted phenyl, R3 is —NO2 and R5 is —NH2, then at least two of R6, R7, R8 and R9 is not hydrogen. In embodiments, when R20 is substituted or unsubstituted phenyl, R3 is —NO2 and R5 is —NR5BR5C, then at least two of R6, R7, R8 and R9 is not hydrogen.


In embodiments, L1 is —CH2—. In embodiments, R20 is




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unsubstituted pyridyl, unsubstituted furanyl, or unsubstituted thiophenyl. In embodiments, L1-R20 is




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In embodiments, R1, and R4 are hydrogen. In embodiments, R2 is hydrogen or halogen. In embodiments, R3 is —NO2, —CN or halogen. In embodiments, R5 is hydrogen, —NO2, or —NH2. In embodiments, R2 and R3 are joined to form, together with the atoms to which they are attached,




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In embodiments, R2-R3 is ═N—O—N═, R6 is hydrogen or halogen. In embodiments, R7 is hydrogen. In embodiments, R8 is hydrogen or halogen. In embodiments, R9 is hydrogen, —CH3, or halogen. In embodiments, R10 and R11 are hydrogen or halogen. In embodiments, R12, R13, and R14 are hydrogen.


In embodiments, R20 is




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R5 is hydrogen or —NH2; R3 is —NO2; R6, R7 and R8 are hydrogen; R9 is hydrogen or halogen; R10, R11, R12, R13, and R14 are hydrogen.


In embodiments, R3 is —NO2 and R6, R7, R8 and R9 are hydrogen, then R5 is not —NH2. In embodiments, when R3 is —NO2 and R5 is —NH2, then at least one of R6, R7, R8 and R9 is not hydrogen. In embodiments, when R5 is —NH2 and R3 is —NO2, then R9 is halogen. In embodiments, when R5 is —NH2 and R3 is —NO2, then R9 is —F. In embodiments, when R5 is —NH2 and R3 is —NO2, then R9 is —Br. In embodiments, when R5 is —NH2 and R3 is —NO2, then R9 is —Cl.


In embodiments, the compound is a compound described herein (e.g., in an aspect, embodiment, example, table, figure, scheme, appendix, or claim).


II. PHARMACEUTICAL COMPOSITIONS

Also provided herein are pharmaceutical formulations. In embodiments, the pharmaceutical formulations (e.g. formulae I, IA, IB, IC, ID, IE, IF, IG, IH, IJ and IK) include the compounds described above (including all embodiments thereof) and a pharmaceutically acceptable excipient. In one aspect is a pharmaceutical composition that includes a compound of formula I or a pharmaceutically acceptable salt thereof and a pharmaceutically acceptable excipient:




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In embodiments, L1 is a bond, —S—, —N(R15)—, —C(O)N(R15)— or substituted or unsubstituted alkylene, and R20 is substituted or unsubstituted heterocycloalkyl, substituted or unsubstituted aryl or substituted or unsubstituted heteroaryl; or -L1-R20 is unsubstituted C2-C4 alkyl. R1, R2, R3, R4, R5, R6, R7, R8, R9, R10, R11, R12, R13, R14, R15 and R20 are as described herein.


In embodiments, L1 is —CH2—. In embodiments, R6, R7, R8 and R9 are independently hydrogen; R10, R11, R12, R13 and R14 are independently hydrogen. In embodiments, at least two of R1, R2, R3, R4, R5 are independently hydrogen. In embodiments, R1 is hydrogen, halogen, —CN, —NO2, —NR1BR1C, NR1BC(O)R1D, —C(O)OR1D or substituted or unsubstituted alkyl; R2 is hydrogen, halogen, —CN, —NO2, —NR2BR2C, NR2BC(O)R2D, —C(O)OR2D or substituted or unsubstituted alkyl; R3 is hydrogen, halogen, —CN, —NO2, —NR3BR3C, NR3BC(O)R3D′, —C(O)OR3D or substituted or unsubstituted alkyl; R4 is hydrogen, halogen, —CN, —NO2, —NR4BR4C, NR4BC(O)R4D′, —C(O)OR4D or substituted or unsubstituted alkyl; R5 is hydrogen, halogen, —CN, —NO2, —NR5BR5C, NR5BC(O)R5D′, —C(O)OR5D or substituted or unsubstituted alkyl. In embodiments, R1B, R2B, R3B, R4B, R5B, R1C, R2C, R3C, R4C, R5C, R1D, R2D, R3D, R4D and R5D are independently hydrogen or methyl. In embodiments, at least two of R1, R2, R4 and R5 are hydrogen; and R3 is —NO2.


In embodiments, L1 is substituted or unsubstituted alkylene. In embodiments, L1 is R1E-substituted or unsubstituted alkylene. In embodiments, L1 is substituted or unsubstituted C1-C3 alkylene. In embodiments, L1 is R1E-substituted or unsubstituted C1-C3 alkylene. In embodiments, LI is —CH2— or —CH2CH2—. In embodiments, R20 is substituted or unsubstituted heteroaryl. In embodiments, R20 is R1E-substituted or unsubstituted heteroaryl. In embodiments, R20 is substituted or unsubstituted heteroaryl. In embodiments, R20 is R1E-substituted or unsubstituted pyridyl, thiophenyl or furanyl. In embodiments, R20 is pyridyl, thiophenyl or furanyl.


In embodiments, R6, R7, R8 and R9 are independently. In embodiments, when L1 is —CH2— and R20 is substituted or unsubstituted heteroaryl, R6, R7, R8 and R9 are independently hydrogen. In embodiments, at least two of R1, R2, R4 and R5 are hydrogen; and R3 is —NO2.


In embodiments, the compound is:




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In embodiments of the pharmaceutical compositions, the compound, or pharmaceutically acceptable salt thereof, is included in a therapeutically effective amount.


1. Formulations

The pharmaceutical composition may be prepared and administered in a wide variety of dosage formulations. Compounds described may be administered orally, rectally, or by injection (e.g. intravenously, intramuscularly, intracutaneously, subcutaneously, intraduodenally, or intraperitoneally).


For preparing pharmaceutical compositions from compounds described herein, pharmaceutically acceptable carriers can be either solid or liquid. Solid form preparations include powders, tablets, pills, capsules, cachets, suppositories, and dispersible granules. A solid carrier may be one or more substance that may also act as diluents, flavoring agents, binders, preservatives, tablet disintegrating agents, or an encapsulating material.


In powders, the carrier may be a finely divided solid in a mixture with the finely divided active component. In tablets, the active component may be mixed with the carrier having the necessary binding properties in suitable proportions and compacted in the shape and size desired.


The powders and tablets preferably contain from 5% to 70% of the active compound. Suitable carriers are magnesium carbonate, magnesium stearate, talc, sugar, lactose, pectin, dextrin, starch, gelatin, tragacanth, methylcellulose, sodium carboxymethylcellulose, a low melting wax, cocoa butter, and the like. The term “preparation” is intended to include the formulation of the active compound with encapsulating material as a carrier providing a capsule in which the active component with or without other carriers, is surrounded by a carrier, which is thus in association with it. Similarly, cachets and lozenges are included. Tablets, powders, capsules, pills, cachets, and lozenges can be used as solid dosage forms suitable for oral administration.


For preparing suppositories, a low melting wax, such as a mixture of fatty acid glycerides or cocoa butter, is first melted and the active component is dispersed homogeneously therein, as by stirring. The molten homogeneous mixture is then poured into convenient sized molds, allowed to cool, and thereby to solidify.


Liquid form preparations include solutions, suspensions, and emulsions, for example, water or water/propylene glycol solutions. For parenteral injection, liquid preparations can be formulated in solution in aqueous polyethylene glycol solution.


Aqueous solutions suitable for oral use can be prepared by dissolving the active component in water and adding suitable colorants, flavors, stabilizers, and thickening agents as desired. Aqueous suspensions suitable for oral use can be made by dispersing the finely divided active component in water with viscous material, such as natural or synthetic gums, resins, methylcellulose, sodium carboxymethylcellulose, and other well-known suspending agents.


Also included are solid form preparations that are intended to be converted, shortly before use, to liquid form preparations for oral administration. Such liquid forms include solutions, suspensions, and emulsions. These preparations may contain, in addition to the active component, colorants, flavors, stabilizers, buffers, artificial and natural sweeteners, dispersants, thickeners, solubilizing agents, and the like.


The pharmaceutical preparation is preferably in unit dosage form. In such form the preparation is subdivided into unit doses containing appropriate quantities of the active component. The unit dosage form can be a packaged preparation, the package containing discrete quantities of preparation, such as packeted tablets, capsules, and powders in vials or ampoules. Also, the unit dosage form can be a capsule, tablet, cachet, or lozenge itself, or it can be the appropriate number of any of these in packaged form.


The quantity of active component in a unit dose preparation may be varied or adjusted from 0.1 mg to 10000 mg according to the particular application and the potency of the active component. The composition can, if desired, also contain other compatible therapeutic agents.


Some compounds may have limited solubility in water and therefore may require a surfactant or other appropriate co-solvent in the composition. Such co-solvents include: Polysorbate 20, 60, and 80; Pluronic F-68, F-84, and P-103; cyclodextrin; and polyoxyl 35 castor oil. Such co-solvents are typically employed at a level between about 0.01% and about 2% by weight. Viscosity greater than that of simple aqueous solutions may be desirable to decrease variability in dispensing the formulations, to decrease physical separation of components of a suspension or emulsion of formulation, and/or otherwise to improve the formulation. Such viscosity building agents include, for example, polyvinyl alcohol, polyvinyl pyrrolidone, methyl cellulose, hydroxy propyl methylcellulose, hydroxyethyl cellulose, carboxymethyl cellulose, hydroxy propyl cellulose, chondroitin sulfate and salts thereof, hyaluronic acid and salts thereof, and combinations of the foregoing. Such agents are typically employed at a level between about 0.01% and about 2% by weight.


The pharmaceutical compositions may additionally include components to provide sustained release and/or comfort. Such components include high molecular weight, anionic mucomimetic polymers, gelling polysaccharides, and finely-divided drug carrier substrates. These components are discussed in greater detail in U.S. Pat. Nos. 4,911,920; 5,403,841; 5,212,162; and 4,861,760. The entire contents of these patents are incorporated herein by reference in their entirety for all purposes.


The pharmaceutical composition may be intended for intravenous use. The pharmaceutically acceptable excipient can include buffers to adjust the pH to a desirable range for intravenous use. Many buffers including salts of inorganic acids such as phosphate, borate, and sulfate are known.


2. Effective Dosages

The pharmaceutical composition may include compositions wherein the active ingredient is contained in a therapeutically effective amount, i.e., in an amount effective to achieve its intended purpose. The actual amount effective for a particular application will depend, inter alia, on the condition being treated.


The dosage and frequency (single or multiple doses) of compounds administered can vary depending upon a variety of factors, including route of administration; size, age, sex, health, body weight, body mass index, and diet of the recipient; nature and extent of symptoms of the disease being treated; presence of other diseases or other health-related problems; kind of concurrent treatment; and complications from any disease or treatment regimen. Other therapeutic regimens or agents can be used in conjunction with the methods and compounds disclosed herein.


Therapeutically effective amounts for use in humans may be determined from animal models. For example, a dose for humans can be formulated to achieve a concentration that has been found to be effective in animals. The dosage in humans can be adjusted by monitoring response of the constipation or dry eye to the treatment and adjusting the dosage upwards or downwards, as described above.


Dosages may be varied depending upon the requirements of the subject and the compound being employed. The dose administered to a subject, in the context of the pharmaceutical compositions presented herein, should be sufficient to effect a beneficial therapeutic response in the subject over time. The size of the dose also will be determined by the existence, nature, and extent of any adverse side effects. Generally, treatment is initiated with smaller dosages, which are less than the optimum dose of the compound. Thereafter, the dosage is increased by small increments until the optimum effect under circumstances is reached.


Dosage amounts and intervals can be adjusted individually to provide levels of the administered compounds effective for the particular clinical indication being treated. This will provide a therapeutic regimen that is commensurate with the severity of the individual's disease state.


Utilizing the teachings provided herein, an effective prophylactic or therapeutic treatment regimen can be planned that does not cause substantial toxicity and yet is entirely effective to treat the clinical symptoms demonstrated by the particular patient. This planning should involve the careful choice of active compound by considering factors such as compound potency, relative bioavailability, patient body weight, presence and severity of adverse side effects, preferred mode of administration, and the toxicity profile of the selected agent.


3. Toxicity

The ratio between toxicity and therapeutic effect for a particular compound is its therapeutic index and can be expressed as the ratio between LD50 (the amount of compound lethal in 50% of the population) and ED50 (the amount of compound effective in 50% of the population). Compounds that exhibit high therapeutic indices are preferred. Therapeutic index data obtained from cell culture assays and/or animal studies can be used in formulating a range of dosages for use in humans. The dosage of such compounds preferably lies within a range of plasma concentrations that include the ED50 with little or no toxicity. The dosage may vary within this range depending upon the dosage form employed and the route of administration utilized. See, e.g. Fingl et al., In; THE PHARMACOLOGICAL BASIS OF THERAPEUTICS, Ch. 1, p. 1, 1975. The exact formulation, route of administration, and dosage can be chosen by the individual physician in view of the patient's condition and the particular method in which the compound is used.


When parenteral application is needed or desired, particularly suitable admixtures for the compounds included in the pharmaceutical composition may be injectable, sterile solutions, oily or aqueous solutions, as well as suspensions, emulsions, or implants, including suppositories. In particular, carriers for parenteral administration include aqueous solutions of dextrose, saline, pure water, ethanol, glycerol, propylene glycol, peanut oil, sesame oil, polyoxyethylene-block polymers, and the like. Ampoules are convenient unit dosages. Pharmaceutical admixtures suitable for use in the pharmaceutical compositions presented herein may include those described, for example, in Pharmaceutical Sciences (17th Ed., Mack Pub. Co., Easton, Pa.) and WO 96/05309, the teachings of both of which are hereby incorporated by reference.


III. METHODS OF ACTIVATING

Further provided herein are methods of activating cystic fibrosis transmembrane regulator (CFTR). In one aspect, the method includes contacting CFTR with an effective amount of a compound of formula I that can activate CFTR:




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or a pharmaceutically acceptable salt thereof.


In compounds of formula I, L1 is a bond, —O—, —S—, —N(R15)—, —C(O)N(R15)—, —C(O)—, substituted or unsubstituted alkylene or substituted or unsubstituted heteroalkylene, and R20 is substituted or unsubstituted cycloalkyl, substituted or unsubstituted heterocycloalkyl, substituted or unsubstituted aryl or substituted or unsubstituted heteroaryl; or -L1-R20 is substituted or unsubstituted alkyl. R1, R2, R3, R4, R5, R6, R7, R8, R9 and R15 are as described herein. The contacting may be performed in vitro. The contacting may be performed in vivo.


IV. METHODS OF TREATING

Further provided herein are methods of treating a disease or disorder in a subject in need thereof by administering an effective amount of a compound of formula I:




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or a pharmaceutically acceptable salt thereof.


In compounds of formula I, L1 is a bond, —O—, —S—, —NR15—, —C(O)NR15—, —C(O)—, substituted or unsubstituted alkylene or substituted or unsubstituted heteroalkylene, and R20 is substituted or unsubstituted cycloalkyl, substituted or unsubstituted heterocycloalkyl, substituted or unsubstituted aryl or substituted or unsubstituted heteroaryl; or -L1-R20 is substituted or unsubstituted alkyl. R1, R2, R3, R4, R5, R6, R7, R8, R9 and R15 are as described herein.


In one aspect is a method of treating constipation in a subject in need thereof, the method including administering to the subject an effective amount of a compound as described herein. In another aspect, is a method of treating a dry eye disorder in a subject in need thereof, the method including administering to the subject an effective amount of a compound as described herein. In yet another aspect, is a method of increasing lacrimation in a subject in need thereof, the method including administering to the subject an effective amount a compound as described herein. The constipation may be opioid-induced constipation. The constipation may be chronic idiopathic constipation. The constipation may be irritable bowel syndrome with constipation predominance. The dry eye disorder may be a lacrimal gland disorder.


In one aspect, provided is a method of treating a cholestatic liver disease in a subject in need thereof, including administering to the subject an effective amount a compound as described herein. In another aspect, provided is a method of treating a pulmonary disease or disorder in a subject in need thereof, including administering to the subject an effective amount of a as described herein. In embodiments, the pulmonary disease or disorder is chronic obstructive pulmonary disease (e.g. bronchitis, asthma, cigarette smoke-induced lung dysfunction).


V. OTHER ASPECTS

For purposes of this section, the term “alkyl” refers to and includes linear or branched univalent hydrocarbon structures and combination thereof, which may be fully saturated, mono- or polyunsaturated, having the number of carbon atoms designated (i.e., C1-C10 means one to ten carbons). Particular alkyl groups are those having 1 to 20 carbon atoms (a “C1-C20 alkyl”). More particular alkyl groups are those having 1 to 8 carbon atoms (a “C1-C8 alkyl”), 3 to 8 carbon atoms (a “C3-C8 alkyl”), 1 to 6 carbon atoms (a “C1-C6 alkyl”), 1 to 5 carbon atoms (a “C1-C5 alkyl”), or 1 to 4 carbon atoms (a “C1-C4 alkyl”). Examples of saturated hydrocarbon radicals include, but are not limited to, groups such as methyl, ethyl, n-propyl, isopropyl, n-butyl, t-butyl, isobutyl, sec-butyl, homologs and isomers of, for example, n-pentyl, n-hexyl, n-heptyl, n-octyl, and the like. An unsaturated alkyl group is one having one or more double bonds or triple bonds. Examples of unsaturated alkyl groups include, but are not limited to, vinyl, 2-propenyl, crotyl, 2-isopentenyl, 2-(butadienyl), 2,4-pentadienyl, 3-(1,4-pentadienyl), ethynyl, 1- and 3-propynyl, 3-butynyl, and the higher homologs and isomers. Examples of saturated C1-C4 alkyl include methyl (CH3), ethyl (C2H5), propyl (C3H7) and butyl (C4H9). Examples of saturated C1-C6 alkyl include methyl (CH3), ethyl (C2H5), propyl (C3H7), butyl (C4H9), pentyl (C5H11) and hexyl (C6H13).


An alkyl group may be substituted (i.e., one or more hydrogen atoms are replaced with univalent or divalent radicals) with one more substituents, such as radicals described herein, for example, fluoro, chloro, bromo, iodo, hydroxyl, alkoxy, thio, amino, acylamino, alkoxycarbonylamido, carboxyl, acyl, alkoxycarbonyl, sulfonyl, cycloalkyl, aryl, heterocyclyl and heteroaryl, and other functional groups known in the art. A “perfluoroalkyl” refers to an alkyl group where every hydrogen atom is replaced with a fluorine atom. Examples of saturated G-G perfluroalkyl include trifluoromethyl (CF3), pentafluoroethyl (C2F5), heptafluoropropyl (C3F7), nonafluorobutyl (C4F9), undecafluoropentyl (C5F11) and tridecafluorohexyl (C6F13).


For purposes of this section, the term “cycloalkyl” refers to and includes cyclic univalent hydrocarbon structures, which may be fully saturated, mono- or polyunsaturated, having the number of carbon atoms designated (i.e., C1-C10 means one to ten carbons). Cycloalkyl can consist of one ring, such as cyclohexyl, or multiple rings, such as adamantly, but excludes aryl groups. A cycloalkyl comprising more than one ring may be fused, spiro or bridged, or combinations thereof. A preferred cycloalkyl is a cyclic hydrocarbon having from 3 to 13 annular carbon atoms. A more preferred cycloalkyl is a cyclic hydrocarbon having from 3 to 8 annular carbon atoms (a “G-G cycloalkyl”). Examples of cycloalkyl include, but are not limited to, cyclopropyl, cyclobutyl, cyclopentyl, cyclohexyl, 1-cyclohexenyl, 3-cyclohexenyl, cycloheptyl, norbornyl, and the like.


For purposes of this section, the term “heterocycle” or “heterocyclyl” refers to a saturated or an unsaturated non-aromatic group having from 1 to 10 annular carbon atoms and from 1 to 4 annular heteroatoms, such as nitrogen, sulfur or oxygen, and the like, wherein the nitrogen and sulfur atoms are optionally oxidized, and the nitrogen atom(s) are optionally quaternized. A heterocyclyl group may have a single ring or multiple condensed rings, but excludes heteroaryl groups. A heterocycle comprising more than one ring may be fused, spiro or bridged, or any combination thereof. In fused ring systems, one or more of the fused rings can be aryl or heteroaryl. Examples of hetercyclyl groups include, but are not limited to, tetrahydropyranyl, dihydropyranyl, piperidinyl, piperazinyl, pyrrolidinyl, thiazolinyl, thiazolidinyl, tetrahydrofuranyl, tetrahydrothiophenyl, 2,3-dihydrobenzo[b]thiophen-2-yl, 4-amino-2-oxopyrimidin-1(2H)-yl, and the like.


For purposes of this section, the term “aryl” refers to and includes polyunsaturated aromatic hydrocarbon substituents. Aryl may contain additional fused rings (e.g., from 1 to 3 rings), including additionally fused aryl, heteroaryl, cycloalkyl, and/or heterocyclyl rings. In one variation, the aryl group contains from 6 to 14 annular carbon atoms. Examples of aryl groups include, but are not limited to, phenyl, naphthyl, biphenyl, and the like.


For purposes of this section, the term “heteroaryl” refers to and includes unsaturated aromatic cyclic groups having from 1 to 10 annular carbon atoms and at least one annular heteroatom, including but not limited to heteroatoms such as nitrogen, oxygen and sulfur, wherein the nitrogen and sulfur atoms are optionally oxidized, and the nitrogen atom(s) are optionally quaternized. A heteroaryl group can be attached to the remainder of the molecule at an annular carbon or annular heteroatom. Heteroaryl may contain additional fused rings (e.g., from 1 to 3 rings), including additionally fused aryl, heteroaryl, cycloalkyl, and/or heterocyclyl rings. Examples of heteroaryl groups include, but are not limited to, pyridyl, pyrimidyl, thiophenyl, furanyl, thiazolyl, and the like.


Cycloalkyl, aryl, heterocyclyl and heteroaryl groups as referred to within this section may also be substituted with one or more substituents, such as radicals detailed herein, for example, fluoro, chloro, bromo, iodo, hydroxyl, alkoxy, thio, amino, acylamino, alkoxycarbonylamido, carboxyl, acyl, alkoxycarbonyl, sulfonyl, alkyl, cycloalkyl, aryl, hetercyclyl and herteroaryl, and other functional groups known in the art.


For purposes of this section, the term “pharmaceutically acceptable carrier” refers to an ingredient in a pharmaceutical formulation, other than an active ingredient, which is nontoxic to a subject. A pharmaceutically acceptable carrier includes, but is not limited to, a buffer, excipient, stabilizer, or preservative, such as those known in the art, for example, described in Remington's Pharmaceutical Sciences 16th edition, Osol, A. Ed. (1980).


As used in this section, “treatment” or “treating” is an approach for obtaining beneficial or desired results including and preferably clinical results. For example, beneficial or desired clinical results include, but are not limited to, one or more of the following: decreasing symptoms resulting from the disease, increasing the quality of life of those suffering from the disease, decreasing the dose of other medications required to treat the disease, delaying the progression of the disease, and/or prolonging survival of individuals.


As used in this section, the phrase “delaying development of a disease” means to defer, hinder, slow, retard, stabilize, and/or postpone development of the disease (such as constipation or dry eye, pulmonary disease or disorder, lung disease or liver disease). This delay can be of varying lengths of time, depending on the history of the disease and/or individual being treated. As is evident to one skilled in the art, a sufficient or significant delay can, in effect, encompass prevention, in that the individual does not develop the disease.


As used in this section, an “effective dosage” or “effective amount” of drug, compound, or pharmaceutical composition is an amount sufficient to effect beneficial or desired results. For prophylactic use, beneficial or desired results include results such as eliminating or reducing the risk, lessening the severity, or delaying the onset of the disease, including biochemical, histological and/or behavioral symptoms of the disease, its complications and intermediate pathological phenotypes presenting during development of the disease. For therapeutic use, beneficial or desired results include clinical results such as decreasing one or more symptoms resulting from the disease, increasing the quality of life of those suffering from the disease, decreasing the dose of other medications required to treat the disease, enhancing effect of another medication such as via targeting, delaying the progression of the disease, and/or prolonging survival. An effective dosage can be administered in one or more administrations. For purposes of this section, an effective dosage of drug, compound, or pharmaceutical composition is an amount sufficient to accomplish prophylactic or therapeutic treatment either directly or indirectly. As is understood in the clinical context, an effective dosage of a drug, compound, or pharmaceutical composition may or may not be achieved in conjunction with another drug, compound, or pharmaceutical composition. Thus, an “effective dosage” may be considered in the context of administering one or more therapeutic agents, and a single agent may be considered to be given in an effective amount if, in conjunction with one or more other agents, a desirable result may be or is achieved.


As used in this section, “in conjunction with” refers to administration of one treatment modality in addition to another treatment modality. As such, “in conjunction with” refers to administration of one treatment modality before, during or after administration of the other treatment modality to the individual.


Unless clearly indicated otherwise, for purposes of this section, the term “individual” as used herein refers to a mammal, including but not limited to, bovine, horse, feline, rabbit, canine, rodent, or primate (e.g., human). In some embodiments, an individual is a human. In some embodiments, an individual is a non-human primate such as chimpanzees and other apes and monkey species. In some embodiments, an individual is a farm animal such as cattle, horses, sheep, goats and swine; pets such as rabbits, dogs and cats; laboratory animals including rodents, such as rats, mice, and guinea pigs; and the like. The aspects described in this section may find use in both human medicine and in the veterinary context.


As used in herein, the singular forms “a,” “an,” and “the” include plural reference unless the context clearly indicates otherwise.


It is understood that aspect and variations of the aspects described in this section include “consisting” and/or “consisting essentially of” aspects and variations.


Constipation therapy includes laxatives that increase stool bulk, such as soluble fiber; create an osmotic load, such as polyethylene glycol; or stimulate intestinal contraction, such as the diphenylmethanes. There are also surface laxatives that soften stool such as docusate sodium and probiotics such as Lactobacillus paracasei [3], The FDA-approved drug linaclotide, a peptide agonist of the guanylate cyclase C receptor, acts by inhibiting visceral pain, stimulating intestinal motility, and increasing intestinal secretion [4, 5], A second approved drug, lubiprostone, a prostaglandin E analog, is thought to activate a putative enterocyte ClC-2 channel [6], though the mechanistic data are less clear. Despite the wide range of therapeutic options, there is a continued need for safe and effective drugs to treat constipation.


Without wishing to be bound by theory, in embodiments of this section, activation of the cystic fibrosis transmembrane regulator (CFTR) chloride channel drives fluid secretion in the intestine, which maintains lubrication of luminal contents. It is hypothesized that direct activation of CFTR may cause fluid secretion and reverse excessive dehydration of stool found in constipation.


Intestinal fluid secretion involves active Cl secretion across the enterocyte epithelium through the basolateral membrane Na+/K+/2Cl cotransporter (NKCC1) and the luminal membrane cystic fibrosis transmembrane regulator (CFTR) Cl channel and Ca2+-activated Cl channel (CaCC). The electrochemical and osmotic forces created by Cl secretion drive Na+ and water secretion [7], In cholera and Traveler's diarrhea CFTR is strongly activated by bacterial enterotoxins through elevation of intracellular cyclic nucleotides [8, 9], CFTR is an attractive target to increase intestinal fluid secretion in constipation as it is robustly expressed throughout the intestine and its activation strongly increases intestinal fluid secretion. An activator targeting CFTR directly is unlikely to produce the massive, uncontrolled intestinal fluid secretion seen in cholera because the enterotoxins in cholera act irreversibly to produce sustained elevation of cytoplasmic cAMP, which not only activates CFTR but also basolateral K+ channels, which increase the electrochemical driving force for Cl secretion; cholera enterotoxins also inhibit the luminal NHE3 Na+/H+ exchanger involved in intestinal fluid absorption [10, 11], Motivated by these considerations and the continuing need for safe and effective drug therapy of constipation, the identification and characterization of a nanomolar-potency, CFTR-targeted small-molecule activators with pro-secretory action in intestine and efficacy in constipation are reported herein.


By high-throughput screening a nanomolar-affinity, small-molecule CFTR activator, CFTRact-J027 was identified and demonstrated to have pro-secretory action in mouse intestine and efficacy in normalizing stool output in a loperamide-induced mouse model of constipation. Constipation remains a significant clinical problem in outpatient and hospitalized settings. Opioid-induced constipation is a common adverse effect in patients after surgery, undergoing chemotherapy and with chronic pain.


CFTR-targeted activation adds to the various mechanisms of action of anti-constipation therapeutics. It is notable that pure CFTR activation is able to produce a robust Cl current and fluid secretion response in the intestine, without causing global elevation of cyclic nucleotide concentration, direct stimulation of intestinal contractility, or alteration of intestinal fluid absorption. Linaclotide, a peptide agonist of the guanylate cyclase C receptor that increases intestinal cell cGMP concentration. Linaclotide inhibits activation of colonic sensory neurons and activates motor neurons, which reduces pain and increases intestinal smooth muscle contraction; in addition, elevation in cGMP concentration in enterocytes may activate CFTR and have a pro-secretory action [4, 5], A second approved drug, the prostaglandin E analog lubiprostone, is thought to activate a putative enterocyte ClC-2 channel [6], though the mechanistic data are less clear. Compared with these drugs, a pure CFTR activator has a single, well-validated mechanism of action and does not produce a global cyclic nucleotide response in multiple cell types. Of note, linaclotide and lubiprostone showed limited efficacy in clinical trials. Linaclotide was effective in ˜20% of chronic constipation patients of whom ˜5% also responded to placebo [15], and lubiprostone was effective in ˜13% of IBS-C patients of whom ˜7% responded to placebo [16], Based on our mouse data showing substantially greater efficacy of CFTRact-J027 compared to supramaximal doses of linaclotide or lubiprostone, we speculate that CFTR activators may have greater efficacy in clinical trials.


CFTRact-J027 is more potent for activation of wildtype CFTR than VX-770 (ivacaftor), the FDA-approved drug for treatment of cystic fibrosis (CF) caused by certain CFTR gating mutations. In FRT cells expressing wild-type CFTR, short-circuit current measurement showed nearly full activation of CFTR by CFTRact-J027 at 3 μM whereas VX-770 maximally activated CFTR by only 15%. However, CFTRact-J027 was substantially less potent than ivacaftor as a ‘potentiator’ of defective chloride channel gating of the most common CF-causing mutation, ΔF508, which is not unexpected, as potentiator efficacy in CF is mutation-specific. In addition to its potential therapeutic utility for constipation, a small-molecule activator of wildtype CFTR may be useful for treatment of chronic obstructive pulmonary disease and bronchitis, asthma, cigarette smoke-induced lung dysfunction, dry eye and cholestatic liver disease [17-19].


Substituted quinoxalinones were reported as selective antagonists of the membrane efflux transporter multiple-drug-resistance protein 1 [20], Quinoxalinones have also been reported to show anti-diabetic activity by stimulating insulin secretion in pancreatic INS-1 cells [21], and inhibitory activity against serine proteases for potential therapy of thrombotic disorders [22], Recently, quinoxalinones have been reported to inhibit aldose reductase [23], These reports suggest that the quinoxalinone scaffold has drug-like properties. Synthetically, quinoxalinone can be prepared in one to four steps from commercially available starting materials [24], which allows facile synthesis of targeted analogs.


In addition to compound-specific off-target actions, the potential side-effects profile of a CFTR activator could include pro-secretory activity in the airway/lungs and various glandular and other epithelia. Off-target effects for constipation therapy could be limited by oral administration of a CFTR activator with limited intestinal absorption and/or rapid systemic clearance to minimize systemic exposure. CFTRact-J027 when administered orally at a high dose (10 mg/kg) showed very low bioavailability with blood levels well below the EC50 for CFTR activation, which may be due to first-pass effect as evidenced its rapid in vitro metabolism in liver microsomes. CFTRact-J027 did not show significant in vitro cytotoxicity at a concentration of 25 μM, >100-fold greater than its EC50 for CFTR activation, or in vivo toxicity in mice in a 7-day study at a maximal efficacious dose that normalized stool output in the loperamide model of constipation. The potentially most significant off-target action, stimulation of lung/airway fluid secretion, was not seen as evidenced by normal lung water content in the 7-day treated mice. These limited toxicity studies offer proof of concept for application of a CFTR activator in constipation.


In summary, the data presented herein demonstrate the pro-secretory action of a CFTR activator in mouse intestine for use in treatment of various types of constipation, which could include opioid-induced constipation, chronic idiopathic constipation, and irritable bowel syndrome with constipation predominance.


Dry eye disorders, including Sjögren's syndrome, constitute a common problem in the aging population with limited effective therapeutic options available. The cAMP-activated Cl channel CFTR (cystic fibrosis transmembrane conductance regulator) is a major pro-secretory chloride channel at the ocular surface. It was investigated whether compounds that target CFTR can correct the abnormal tear film in dry eye. Small-molecule activators of human wild-type CFTR identified by high-throughput screening were evaluated in cell culture and in vivo assays to select compounds that stimulate Cl-driven fluid secretion across the ocular surface in mice. An aminophenyl-1,3,5-triazine, CFTRact-K089, fully activated CFTR in cell cultures with EC50˜250 nM and produced a ˜8.5 mV hyperpolarization in ocular surface potential difference. When delivered topically, CFTRact-K089 doubled basal tear secretion for four hours and had no effect in CF mice. CFTRact-K089 showed sustained tear film bioavailability without detectable systemic absorption. In a mouse model of aqueous-deficient dry eye produced by lacrimal gland excision, topical administration of 0.1 nmol CFTRact-K089 three times daily restored tear secretion to basal levels and fully prevented the corneal epithelial disruption seen in vehicle-treated controls. The data presented herein demonstrate potential utility of CFTR-targeted activators as a novel pro-secretory treatment for dry eye.


Ninety-four percent of surveyed ophthalmologists believe that additional treatments are needed for moderate-to-severe dry eye (7).


The ocular surface is a collection of anatomically continuous epithelial and glandular tissues that are functionally linked to maintain the tear film (8). While lacrimation contributes the bulk of reflex tearing, the cornea and conjunctiva regulate basal tear volume and composition. The principal determinants of water movement across the ocular surface into the tear film include apical chloride (Cl) secretion through cAMP- and calcium (Ca2+)-dependent Cl transporters, and sodium (Na+) absorption largely though the epithelial Na+ channel (ENaC).


With regard to pro-secretory candidates for dry eye therapy, an ENaC inhibitor, P321, has recently entered phase 1/2 studies (9). Diquafosol, a UTP analog that targets surface epithelial P2Y2 receptors and stimulates Cl and mucin secretion by Ca2+ signaling (10), is approved for dry eye in Japan (11, 12) but failed phase III trials in the United States.


The cystic fibrosis transmembrane conductance regulator (CFTR) is a cAMP-activated Cl channel expressed in some secretory epithelial cells, including those in cornea and conjunctiva (14-16). We found substantial capacity for active CFTR-facilitated Cl at the ocular surface in mice (21, 22), as subsequently shown in rat conjunctiva (23), providing a rational basis for investigation of CFTR activators as a pro-secretory strategy for dry eye. The only clinically approved CFTR activator, VX-770 (ivacaftor), is indicated for potentiating the channel gating of certain CFTR mutants causing CF, but only weakly activates wild-type CFTR (24, 25).


Novel small-molecule activators of wild-type CFTR identified by high-throughput screening as potential topical therapy for dry eye were evaluated to demonstrate efficacy of newly identified CFTR activator(s) in a mouse model of dry eye.


The potential utility of small-molecule activators of CFTR for dry eye therapy was investigated. After several prior development failures, dry eye remains an unmet need in ocular disease. It was hypothesized that CFTR-targeted pro-secretory compounds could normalize tear film volume and ocular surface properties in dry eye (21, 22). In dry eye disorders, tear film hyperosmolarity stimulates pro-inflammatory signaling, secretion of cytokines and metalloproteinases, and disruption of corneal epithelial cell integrity (35-38). By minimizing tear film hyperosmolarity, CFTR activation is predicted to prevent these downstream ocular surface changes.


Small-molecule CFTR activators were identified by high-throughput screening that produced sustained Cl-driven aqueous fluid secretion across the ocular surface by a mechanism involving direct CFTR activation rather than upstream cAMP signaling. The rationale to choose compounds that activate CFTR directly was to minimize potential off-target effects of generalized cAMP stimulation and to reduce the likelihood of tachyphylaxis for compounds targeting signaling receptors. These compounds had low-nanomolar EC50 for activation of human CFTR in vitro and produced full activation at higher concentrations. Large CFTR-dependent PD hyperpolarizations and tear hypersecretion were demonstrated in mice. Substantial compound activities in mice and humans will facilitate translation of data here to humans.


It was found that CFTRact-K089 restored tear secretion and prevented epithelial disruption in an experimental mouse model of lacrimal insufficiency. CFTR activators may be particularly suited for disorders of the lacrimal gland, such as primary Sjögren's syndrome, by stimulating fluid transport across the intact corneal and conjunctival epithelia. CFTR activators probably exert their major pro-secretory effect at the ocular surface, although there is indirect for CFTR expression and function in lacrimal gland (39-42). Direct stimulation of lacrimal secretion is unlikely in the studies here because of minimal compound penetration to lacrimal tissues following topical delivery, and the demonstrated compound efficacy in a model of lacrimal insufficiency. At the ocular surface, the conjunctiva probably contributes the bulk of fluid secretion given its much larger surface area compared to cornea (43).


Alternative pro-secretory therapies targeting different ocular surface ion channels have been considered. The only FDA-approved CFTR activator, VX-770, was developed as a “potentiator” to treat CF by correcting the channel gating of certain CFTR mutations (44). However, VX-770 showed relatively little activity against wild-type CFTR in cell cultures and in mice in vivo. Chronic application of VX-770 may also diminish CFTR functional expression (24) and cause cataracts (seen in juvenile rats; ref. 42), which is likely an off-target effect because CFTR is not expressed in lens.


An indirect agonist of Ca2+-activated Cl channel(s), diquafosol, augments both aqueous and mucin secretion. However, diquafosol failed phase III trials, likely due to transient induced Ca2+ elevation and Cl channel activation, producing minimal net fluid secretion. CFTR activators, which produce sustained tear fluid secretion, overcome this limitation. CFTRact-K089 and CFTRact-J027 showed favorable pharmacodynamics and could be conveniently administered topically several times daily in a standard ophthalmic formulation.


The data presented herein show that CFTR activation alone facilitates sustained outward Cl flux and fluid secretion, suggesting that basal K+ conductance, without augmented cyclic nucleotide or Ca2+ signaling, is sufficient to support ocular surface fluid transport. Still, the potential synergy of a CFTR agonist and a K+ channel activator or an ENaC inhibitor could be explored to further increase tear secretion for dry eye therapy.


The efficacy of CFTRact-K089 in a clinically relevant mouse model of aqueous-deficient dry eye disease was demonstrated for topical, pro-secretory CFTR activator therapy to restore basal tear secretion and prevent ocular surface pathology. Compared with immunosuppressive approaches, CFTR activation has the advantage of addressing an early event in dry eye pathogenesis. Our data thus support the development potential of CFTR activators as first-in-class dry eye therapy.


Examples herein provide further disclosure on aspects and embodiments of this section.


Although the foregoing section has been described in some detail by way of illustration and example for purposes of clarity of understanding, it is apparent to those skilled in the art that certain minor changes and modifications will be practiced in light of the above teaching. Therefore, the description and examples should not be construed as limiting the scope of any invention described herein.


All references cited herein, including patent applications and publications, are hereby incorporated by reference in their entirety.


Embodiments contemplated herein include embodiments PI to P21 following.


Embodiment P1. A pharmaceutical composition, comprising a pharmaceutically acceptable excipient, and a compound of Formula I:




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or a pharmaceutically acceptable salt thereof, wherein: L1 is —O—, —S—, —NHR15— (e.g —NH—), —C(O)NR15, substituted or unsubstituted alkylene or substituted or unsubstituted heteroalkylene; n1 is an integer from 0 to 4; m1 and v1 are independently 1 or 2; R1 is hydrogen, halogen, —CX1,13, —CHX1,12, —CH2X1,1, —CN, —SOn1R1A, —SOv1NR1BR1C, —NHNR1BR1C, —ONR1BR1C, —NHC(O)NHNR1BR1C, —NHC(O)NR1BR1C, —N(O)m1, —NR1BR1C, —C(O)R1D, —C(O)OR1D, —C(O)NR1BR1C, —OR1A, —NR1BSO2R1A, —NR1BC(O)R1D, —NR1BC(O)OR1D, —NR1BOR1D, —OCX1,13, —OCHX1,12, substituted or unsubstituted alkyl, substituted or unsubstituted heteroalkyl, substituted or unsubstituted cycloalkyl, substituted or unsubstituted heterocycloalkyl, substituted or unsubstituted aryl, or substituted or unsubstituted heteroaryl; R2 is hydrogen, halogen, —CX2,13, —CHX2,12, —CH2X2,1, —CN, —SOn1R2A, —SOv1NR2BR2C, —NHNR2BR2C, —ONR2BR2C, —NHC(O)NHNR2BR2C, —NHC(O)NR2BR2C, —N(O)m1, —NR2BR2C, —C(O)R2D, —C(O)OR2D, —C(O)NR2BR2C, —OR2A, —NR2BSO2R2A, —NR2BC(O)R2D, —NR2BC(O)OR2D, —NR2BOR2D, —OCX2,13, —OCHX2,12, substituted or unsubstituted alkyl, substituted or unsubstituted heteroalkyl, substituted or unsubstituted cycloalkyl, substituted or unsubstituted heterocycloalkyl, substituted or unsubstituted aryl, or substituted or unsubstituted heteroaryl; R3 is hydrogen, halogen, —CX3,13, —CHX3,12, —CH2X3,1, —CN, —SOn1R3A, —SOv1NR3BR3C, —NHNR3BR3C, —ONR3BR3C, —NHC(O)NHNR3BR3C, —NHC(O)NR3BR3C, —N(O)m1, —NR3BR3C, —C(O)R3D, —C(O)OR3D, —C(O)NR3BR3C, —OR3A, —NR3BSO2R3A, —NR3BC(O)R3D, —NR3BC(O)OR3D, —NR3BOR3D, —OCX3,12, —OCHX3,12, substituted or unsubstituted alkyl, substituted or unsubstituted heteroalkyl, substituted or unsubstituted cycloalkyl, substituted or unsubstituted heterocycloalkyl, substituted or unsubstituted aryl, or substituted or unsubstituted heteroaryl; R4 is hydrogen, halogen, —CX4,13, —CHX4,12, —CH2X4,1, —CN, —SOn1R4A, —SOv1NR4BR4C, —NHNR4BR4C, —ONR4BR4C, —NHC(O)NHNR4BR4C, —NHC(O)NR4BR4C, —N(O)m1, —NR4BR4C, —C(O)R4D, —C(O)OR4D, —C(O)NR4BR4C, —OR4A, —NR4BSO2R4A, —NR4BC(O)R4D, —NR4BC(O)OR4D, —NR4BOR4D, —OCX4,13, —OCHX4,12, substituted or unsubstituted alkyl, substituted or unsubstituted heteroalkyl, substituted or unsubstituted cycloalkyl, substituted or unsubstituted heterocycloalkyl, substituted or unsubstituted aryl, or substituted or unsubstituted heteroaryl; R5 is hydrogen, halogen, —CX5,13, —CHX5,12, —CH2X5,1, —CN, —SOn1R5A, —SOv1NR5BR5C, —NHNR5BR5C, —ONR5BR5C, —NHC(O)NHNR5BR5C, —NHC(O)NR5BR5C, —N(O)m1, —NR5BR5C, —C(O)R5D, —C(O)OR5D, —C(O)NR5BR5C, —OR5A, —NR5BSO2R5A, —NR5BC(O)R5D, —NR5BC(O)OR5D, —NR5BOR5D, —OCX5,13, —OCHX5,12, substituted or unsubstituted alkyl, substituted or unsubstituted heteroalkyl, substituted or unsubstituted cycloalkyl, substituted or unsubstituted heterocycloalkyl, substituted or unsubstituted aryl, or substituted or unsubstituted heteroaryl; R6 is hydrogen, halogen, —CX6,13, —CHX6,12, —CH2X6,1, —CN, —SOn1R6A, —SOv1NR6BR6C, —NHNR6BR6C, —ONR6BR6C, —NHC(O)NHNR6BR6C, —NHC(O)NR6BR6C, —N(O)m1, —NR6BR6C, —C(O)R6D, —C(O)OR6D, —C(O)NR6BR6C, —OR6A, —NR6BSO2R6A, —NR6BC(O)R6D, —NR6BC(O)OR6D, —NR6BOR6D, —OCX6,13, —OCHX6,12, substituted or unsubstituted alkyl, substituted or unsubstituted heteroalkyl, substituted or unsubstituted cycloalkyl, substituted or unsubstituted heterocycloalkyl, substituted or unsubstituted aryl, or substituted or unsubstituted heteroaryl; R7 is hydrogen, halogen, —CX7,13, —CHX7,12, —CH2X7,1, —CN, —SOn1R7A, —SOv1NR7BR7C, —NHNR7BR7C, —ONR7BR7C, —NHC(O)NHNR7BR7C, —NHC(O)NR7BR7C, —N(O)m1, —NR7BR7C, —C(O)R7D, —C(O)OR7D, —C(O)NR7BR7C, —OR7A, —NR7BSO2R7A, —NR7AC(O)R7C, —NR7BC(O)OR7D, —NR7BOR7D, —OCX7,13, —OCHX7,12, substituted or unsubstituted alkyl, substituted or unsubstituted heteroalkyl, substituted or unsubstituted cycloalkyl, substituted or unsubstituted heterocycloalkyl, substituted or unsubstituted aryl, or substituted or unsubstituted heteroaryl; R8 is hydrogen, halogen, —CX8,13, —CHX8,12, —CH2X8,1, —CN, —SOn1R8A, —SOv1NR8BR8C, —NHNR8BR8C, —ONR8BR8C, —NHC(O)NHNR8BR8C, —NHC(O)NR8BR8C, —N(O)m1, —NR8BR8C, —C(O)R8D, —C(O)OR8D, —C(O)NR8BR8C, —OR8A, —NR8BSO2R8A, —NR8BC(O)R8D, —NR8BC(O)OR8D, —NR8BOR8D, —OCX8,13, —OCHX8,12, substituted or unsubstituted alkyl, substituted or unsubstituted heteroalkyl, substituted or unsubstituted cycloalkyl, substituted or unsubstituted heterocycloalkyl, substituted or unsubstituted aryl, or substituted or unsubstituted heteroaryl; R9 is hydrogen, halogen, —CX9,13, —CHX9,12, —CH2X9,1, —CN, —SOn1R9A, —SOv1NR9BR9C, —NHNR9BR9C, —ONR9BR9C, —NHC(O)NHNR9BR9C, —NHC(O)NR9BR9C, —N(O)m1, —NR9BR9C, —C(O)R9D, —C(O)OR9D, —C(O)NR9BR9C, —OR9A, —NR9BSO2R9A, —NR9BC(O)R9D, —NR9BC(O)OR9D, —NR9BOR9D, —OCX9,13, —OCHX9,12, substituted or unsubstituted alkyl, substituted or unsubstituted heteroalkyl, substituted or unsubstituted cycloalkyl, substituted or unsubstituted heterocycloalkyl, substituted or unsubstituted aryl, or substituted or unsubstituted heteroaryl; R10 is hydrogen, halogen, —CX10,13, —CHX10,12, —CH2X10,1, —CN, —SOn1R10A, —SOv1NR10BR10C, —NHNR10BR10C, —ONR10BR10C, —NHC(O)NHNR10BR10C, —NHC(O)NR10BR10C, —N(O)m1, —NR10BR10C, —C(O)R10D, —C(O)OR10D, —C(O)NR10BR10C, —OR10A, —NR10BSO2R10A, —NR10BC(O)R10D, —NR10BC(O)OR10D, —NR10BOR10D, —OCX10,13, —OCHX10,12, substituted or unsubstituted alkyl, substituted or unsubstituted heteroalkyl, substituted or unsubstituted cycloalkyl, substituted or unsubstituted heterocycloalkyl, substituted or unsubstituted aryl, or substituted or unsubstituted heteroaryl; R11 is hydrogen, halogen, —CX11,13, —CHX11,12, —CH2X11,1, —CN, —SOn1R11A, —SOv1NR11BR11C, —NHNR11BR11C, —ONR11BR11C, —NHC(O)NHNR11BR11C, —NHC(O)NR11BR11C, —N(O)m1, —NR11BR11C, —C(O)R11D, —C(O)OR11D, —C(O)NR11BR11C, —OR11A, —NR11BSO2R11A, —NR11BC(O)R11D, —NR11BC(O)OR11D, —NR11BOR11D, —OCX11,13, —OCHX11,12, substituted or unsubstituted alkyl, substituted or unsubstituted heteroalkyl, substituted or unsubstituted cycloalkyl, substituted or unsubstituted heterocycloalkyl, substituted or unsubstituted aryl, or substituted or unsubstituted heteroaryl; R12 is hydrogen, halogen, —CX12,13, —CHX12,12, —CH2X12,1, —CN, —SOn1R12A, —SOv1NR12BR12C, —NHNR12BR12C, —ONR12BR12C, —NHC(O)NHNR12BR12C, —NHC(O)NR12BR12C, —N(O)m1, —NR12BR12C, —C(O)R12D, —C(O)OR12D, —C(O)NR12BR12C, —OR12A, —NR12BSO2R12A, —NR12BC(O)R12D, —NR12BC(O)OR12D, —NR12BOR12D, —OCX12,13, —OCHX12,12, substituted or unsubstituted alkyl, substituted or unsubstituted heteroalkyl, substituted or unsubstituted cycloalkyl, substituted or unsubstituted heterocycloalkyl, substituted or unsubstituted aryl, or substituted or unsubstituted heteroaryl; R13 is hydrogen, halogen, —CX13,13, —CHX13,12, —CH2X13,1, —CN, —SOn1R13A, —SOv1NR13BR13C, —NHNR13BR13C, —ONR13BR13C, —NHC(O)NHNR13BR13C, —NHC(O)NR13BR13C, —N(O)m1, —NR13BR13C, —C(O)R13D, —C(O)OR13D, —C(O)NR13BR13C, —OR13A, —NR13BSO2R13A, —NR13BC(O)R13D, —NR13BC(O)OR13D, —NR13BOR13D, —OCX13,13, —OCHX13,12, substituted or unsubstituted alkyl, substituted or unsubstituted heteroalkyl, substituted or unsubstituted cycloalkyl, substituted or unsubstituted heterocycloalkyl, substituted or unsubstituted aryl, or substituted or unsubstituted heteroaryl; R14 is hydrogen, halogen, —CX14,13, —CHX14,12, —CH2X14,1, —CN, —SOn1R14A, —SOv1NR14BR14C, —NHNR14BR14C, —ONR14BR14C, —NHC(O)NHNR14BR14C, —NHC(O)NR14BR14C, —N(O)m1, —NR14BR14C, —C(O)R14D, —C(O)OR14D, —C(O)NR14BR14C, —OR14A, —NR14BSO2R14A, —NR14BC(O)R14D, —NR14BC(O)OR14D, —NR14BOR14D, —OCX14,13, —OCHX14,12, substituted or unsubstituted alkyl, substituted or unsubstituted heteroalkyl, substituted or unsubstituted cycloalkyl, substituted or unsubstituted heterocycloalkyl, substituted or unsubstituted aryl, or substituted or unsubstituted heteroaryl; R15 is hydrogen, substituted or unsubstituted alkyl, substituted or unsubstituted heteroalkyl, substituted or unsubstituted cycloalkyl, substituted or unsubstituted heterocycloalkyl, substituted or unsubstituted aryl, or substituted or unsubstituted heteroaryl; R1A, R1B, R1C, R1D, R2A, R2B, R2C, R2D, R3A, R3B, R3C, R3D, R4A, R4B, R4C, R4D, R5A, R5B, R5C, R5D, R6A, R6B, R6C, R6D, R7A, R7B, R7C, R7D, R8A, R8B, R8C, R8D, R9A, R9B, R9C, R9D, R10A, R10B, R10C, R10D, R11A, R11B, R11C, R11D, R12A, R12B, R12C, R12D, R13A, R13B, R13C, R13D, R14A, R14B, R14C and R14D are independently hydrogen, halogen, —CF3, —CCl3, —CBr3, —CI3, —OH, —NH2, —COOH, —CONH2, —NO2, —SH, —SO3H, —SO4H, —SO2NH2, —NHNH2, —ONH2, —NHC(O)NHNH2, —NHC(O)NH2, —NHSO2H, —NHC(O)H, —NHC(O)—OH, —NHOH, —OCF3, —OCCl3, —OCBr3, —OCI3, —OCHF2, —OCHCl2, —OCHBr2, —OCHI2, substituted or unsubstituted alkyl, substituted or unsubstituted heteroalkyl, substituted or unsubstituted cycloalkyl, substituted or unsubstituted heterocycloalkyl, substituted or unsubstituted aryl, or substituted or unsubstituted heteroaryl; R1B, R1C, R2B, R2C, R3B, R3C, R4B, R4C, R5B, R5C, R6B, R6C, R7B, R7C, R8B, R8C, R9B, R9C, R10B, R10C, R11B, R11C, R12B, R12C, R13B, R13C, R14B and R14C substituents bonded to the same nitrogen atom may optionally be joined to form a substituted or unsubstituted heterocycloalkyl or substituted or unsubstituted heteroaryl; and X1,1, X2,1, X3,1, X4,1, X5,1, X6,1, X7,1, X8,1, X9,1, X10,1, X11,1, X12,1, X13,1 and X14,1 are independently —Cl, —Br, —I or —F.


Embodiment P2. The pharmaceutical composition of embodiment PI, wherein L1 is —CH2—.


Embodiment P3. The pharmaceutical composition of embodiment IP, wherein R6, R7, R8 and R9 are independently hydrogen.


Embodiment P4. The pharmaceutical composition of embodiment PI, wherein at least two of R1, R2, R3, R4, R5 are independently hydrogen.


Embodiment P5. The pharmaceutical composition of embodiment P4, wherein: R1 is hydrogen, halogen —NO2, —NR1BR1C, NR1BC(O)R1D or substituted or unsubstituted alkyl; R2 is hydrogen, halogen —NO2, —NR2BR2C, NR2BC(O)R2D or substituted or unsubstituted alkyl; R3 is hydrogen, halogen —NO2, —NR3BR3C, NR3BC(O)R3D or substituted or unsubstituted alkyl; R4 is hydrogen, halogen —NO2, —NR4BR4C, NR4BC(O)R4D or substituted or unsubstituted alkyl; R5 is hydrogen, halogen —NO2, —NR5BR5C, NR5BC(O)R5D or substituted or unsubstituted alkyl; and R15 is hydrogen or substituted or unsubstituted alkyl.


Embodiment P6. The pharmaceutical composition of embodiment P1, wherein R10, R11, R12, R13 and R14 are independently hydrogen.


Embodiment P7. A pharmaceutical composition, comprising a pharmaceutically acceptable excipient, and a compound of Formula IA:




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or a pharmaceutically acceptable salt thereof, wherein: n1 is an integer from 0 to 4; m1 and v1 are independently 1 or 2; R1 is hydrogen, halogen, —CX1,13, —CHX1,12, —CH2X1,1, —CN, —SOn1R1A, —SOv1NR1BR1C, —NHNR1BR1C, —ONR1BR1C, —NHC(O)NHNR1BR1C, —NHC(O)NR1BR1C, —N(O)m1, —NR1BR1C, —C(O)R1D, —C(O)OR1D, —C(O)NR1BR1C, —OR1A, —NR1BSO2R1A, —NR1BC(O)R1D, —NR1BC(O)OR1D, —NR1BOR1D, —OCX1,13, —OCHX1,12, substituted or unsubstituted alkyl, substituted or unsubstituted heteroalkyl, substituted or unsubstituted cycloalkyl, substituted or unsubstituted heterocycloalkyl, substituted or unsubstituted aryl, or substituted or unsubstituted heteroaryl; R2 is hydrogen, halogen, —CX2,13, —CHX2,12, —CH2X2,1, —CN, —SOn1R2A, —SOv1NR2BR2C, —NHNR2BR2C, —ONR2BR2C, —NHC(O)NHNR2BR2C, —NHC(O)NR2BR2C, —N(O)m1, —NR2BR2C, —C(O)R2D, —C(O)OR2D, —C(O)NR2BR2C, —OR2A, —NR2BSO2R2A, —NR2BC(O)R2D, —NR2BC(O)OR2D, —NR2BOR2D, —OCX2,13, —OCHX2,12, substituted or unsubstituted alkyl, substituted or unsubstituted heteroalkyl, substituted or unsubstituted cycloalkyl, substituted or unsubstituted heterocycloalkyl, substituted or unsubstituted aryl, or substituted or unsubstituted heteroaryl; R3 is hydrogen, halogen, —CX3,13, —CHX3,12, —CH2X3,1, —CN, —SOn1R3A, —SOv1NR3BR3C, —NHNR3BR3C, —ONR3BR3C, —NHC(O)NHNR3BR3C, —NHC(O)NR3BR3C, —N(O)m1, —NR3BR3C, —C(O)R3D, —C(O)OR3D, —C(O)NR3BR3C, —OR3A, —NR3BSO2R3A, —NR3BC(O)R3D, —NR3BC(O)OR3D, —NR3BOR3D, —OCX3,13, —OCHX3,12, substituted or unsubstituted alkyl, substituted or unsubstituted heteroalkyl, substituted or unsubstituted cycloalkyl, substituted or unsubstituted heterocycloalkyl, substituted or unsubstituted aryl, or substituted or unsubstituted heteroaryl; R4 is hydrogen, halogen, —CX4,13, —CHX4,12, —CH2X4,1, —CN, —SOn1R4A, —SOv1NR4BR4C, —NHNR4BR4C, —ONR4BR4C, —NHC(O)NHNR4BR4C, —NHC(O)NR4BR4C, —N(O)m1, —NR4BR4C, —C(O)R4D, —C(O)OR4D, —C(O)NR4BR4C, —OR4A, —NR4BSO2R4A, —NR4BC(O)R4D, —NR4BC(O)OR4D, —NR4BOR4D, —OCX4,13, —OCHX4,12, substituted or unsubstituted alkyl, substituted or unsubstituted heteroalkyl, substituted or unsubstituted cycloalkyl, substituted or unsubstituted heterocycloalkyl, substituted or unsubstituted aryl, or substituted or unsubstituted heteroaryl; R5 is hydrogen, halogen, —CX5,13, —CHX5,12, —CH2X5,1, —CN, —SOn1R5A, —SOv1NR5BR5C, —NHNR5BR5C, —ONR5BR5C, —NHC(O)NHNR5BR5C, —NHC(O)NR5BR5C, —N(O)m1, —NR5BR5C, —C(O)R5D, —C(O)OR5D, —C(O)NR5BR5C, —OR5A, —NR5BSO2R5A, —NR5BC(O)R5D, —NR5BC(O)OR5D, —NR5BOR5D, —OCX5,13, —OCHX5,12, substituted or unsubstituted alkyl, substituted or unsubstituted heteroalkyl, substituted or unsubstituted cycloalkyl, substituted or unsubstituted heterocycloalkyl, substituted or unsubstituted aryl, or substituted or unsubstituted heteroaryl; R6 is hydrogen, halogen, —CX6,13, —CHX6,12, —CH2X6,1, —CN, —SOn1R6A, —SOv1NR6BR6C, —NHNR6BR6C, —ONR6BR6C, —NHC(O)NHNR6BR6C, —NHC(O)NR6BR6C, —N(O)m1, —NR6BR6C, —C(O)R6D, —C(O)OR6D, —C(O)NR6BR6C, —OR6A, —NR6BSO2R6A, —NR6BC(O)R6D, —NR6BC(O)OR6D, —NR6BOR6D, —OCX6,13, —OCHX6,12, substituted or unsubstituted alkyl, substituted or unsubstituted heteroalkyl, substituted or unsubstituted cycloalkyl, substituted or unsubstituted heterocycloalkyl, substituted or unsubstituted aryl, or substituted or unsubstituted heteroaryl; R7 is hydrogen, halogen, —CX7,13, —CHX7,12, —CH2X7,1, —CN, —SOn1R7A, —SOv1NR7BR7C, —NHNR7BR7C, —ONR7BR7C, —NHC(O)NHNR7BR7C, —NHC(O)NR7BR7C, —N(O)m1, —NR7BR7C, —C(O)R7D, —C(O)OR7D, —C(O)NR7BR7C, —OR7A, —NR7BSO2R7A, —NR7AC(O)R7C, —NR7BC(O)OR7D, —NR7BOR7D, —OCX7,13, —OCHX7,12, substituted or unsubstituted alkyl, substituted or unsubstituted heteroalkyl, substituted or unsubstituted cycloalkyl, substituted or unsubstituted heterocycloalkyl, substituted or un substituted aryl, or substituted or unsubstituted heteroaryl; R8 is hydrogen, halogen, —CX8,13, —CHX8,12, —CH2X8,1, —CN, —SOn1R8A, —SOv1NR8BR8C, —NHNR8BR8C, —ONR8BR8C, —NHC(O)NHNR8BR8C, —NHC(O)NR8BR8C, —N(O)m1, —NR8BR8C, —C(O)R8D, —C(O)OR8D, —C(O)NR8BR8C, —OR8A, —NR8BSO2R8A, —NR8BC(O)R8D, —NR8BC(O)OR8D, —NR8BOR8D, —OCX8,13, —OCHX8,12, substituted or unsubstituted alkyl, substituted or unsubstituted heteroalkyl, substituted or unsubstituted cycloalkyl, substituted or unsubstituted heterocycloalkyl, substituted or unsubstituted aryl, or substituted or unsubstituted heteroaryl; R9 is hydrogen, halogen, —CX9,13, —CHX9,12, —CH2X9,1, —CN, —SOn1R9A, —SOv1NR9BR9C, —NHNR9BR9C, —ONR9BR9C, —NHC(O)NHNR9BR9C, —NHC(O)NR9BR9C, —N(O)m1, —NR9BR9C, —C(O)R9D, —C(O)OR9D, —C(O)NR9BR9C, —OR9A, —NR9BSO2R9A, —NR9BC(O)R9D, —NR9BC(O)OR9D, —NR9BOR9D, —OCX9,13, —OCHX9,12, substituted or unsubstituted alkyl, substituted or unsubstituted heteroalkyl, substituted or unsubstituted cycloalkyl, substituted or unsubstituted heterocycloalkyl, substituted or unsubstituted aryl, or substituted or unsubstituted heteroaryl; R10 is hydrogen, halogen, —CX10,13, —CHX10,12, —CH2X10,1, —CN, —SOn1R10A, —SOv1NR10BR10C, —NHNR10BR10C, —ONR10BR10C, —NHC(O)NHNR10BR10C, —NHC(O)NR10BR10C, —N(O)m1, —NR10BR10C, —C(O)R10D, —C(O)OR10D, —C(O)NR10BR10C, —OR10A, —NR10BSO2R10A, —NR10BC(O)R10D, —NR10BC(O)OR10D, —NR10BOR10D, —OCX10,13, —OCHX10,12, substituted or unsubstituted alkyl, substituted or unsubstituted heteroalkyl, substituted or unsubstituted cycloalkyl, substituted or unsubstituted heterocycloalkyl, substituted or unsubstituted aryl, or substituted or unsubstituted heteroaryl; R11 is hydrogen, halogen, —CX11,13, —CHX11,12, —CH2X11,1, —CN, —SOn1R11A, —SOv1NR11BR11C, —NHNR11BR11C, —ONR11BR11C, —NHC(O)NHNR11BR11C, —NHC(O)NR11BR11C, —N(O)m1, —NR11BR11C, —C(O)R11D, —C(O)OR11D, —C(O)NR11BR11C, —OR11A, —NR11BSO2R11A, —NR11BC(O)R11D, —NR11BC(O)OR11D, —NR11BOR11D, —OCX11,13, —OCHX11,12, substituted or unsubstituted alkyl, substituted or unsubstituted heteroalkyl, substituted or unsubstituted cycloalkyl, substituted or unsubstituted heterocycloalkyl, substituted or unsubstituted aryl, or substituted or unsubstituted heteroaryl; R12 is hydrogen, halogen, —CX12,13, —CHX12,12, —CH2X12,1, —CN, —SOn1R12A, —SOv1NR12BR12C, —NHNR12BR12C, —ONR12BR12C, —NHC(O)NHNR12BR12C, —NHC(O)NR12BR12C, —N(O)m1, —NR12BR12C, —C(O)R12D, —C(O)OR12D, —C(O)NR12BR12C, —OR12A, —NR12BSO2R12A, —NR12BC(O)R12D, —NR12BC(O)OR12D, —NR12BOR12D, —OCX12,13, —OCHX12,12, substituted or unsubstituted alkyl, substituted or unsubstituted heteroalkyl, substituted or unsubstituted cycloalkyl, substituted or unsubstituted heterocycloalkyl, substituted or unsubstituted aryl, or substituted or unsubstituted heteroaryl; R13 is hydrogen, halogen, —CX13,13, —CHX13,12, —CH2X13,1, —CN, —SOn1R13A, —SOv1NR13BR13C, —NHNR13BR13C, —ONR13BR13C, —NHC(O)NHNR13BR13C, —NHC(O)NR13BR13C, —N(O)m1, —NR13BR13C, —C(O)R13D, —C(O)OR13D, —C(O)NR13BR13C, —OR13A, —NR13BSO2R13A, —NR13BC(O)R13D, —NR13BC(O)OR13D, —NR13BOR13D, —OCX13,13, —OCHX13,12, substituted or unsubstituted alkyl, substituted or unsubstituted heteroalkyl, substituted or unsubstituted cycloalkyl, substituted or unsubstituted heterocycloalkyl, substituted or unsubstituted aryl, or substituted or unsubstituted heteroaryl; R14 is hydrogen, halogen, —CX14,13, —CHX14,12, —CH2X14,1, —CN, —SOn1R14A, —SOv1NR14BR14C, —NHNR14BR14C, —ONR14BR14C, —NHC(O)NHNR14BR14C, —NHC(O)NR14BR14C, —N(O)m1, —NR14BR14C, —C(O)R14D, —C(O)OR14D, —C(O)NR14BR14C, —OR14A, —NR14BSO2R14A, —NR14BC(O)R14D, —NR14BC(O)OR14D, —NR14BOR14D, —OCX14,13, —OCHX14,12, substituted or unsubstituted alkyl, substituted or unsubstituted heteroalkyl, substituted or unsubstituted cycloalkyl, substituted or unsubstituted heterocycloalkyl, substituted or unsubstituted aryl, or substituted or unsubstituted heteroaryl; R15 is hydrogen, substituted or unsubstituted alkyl, substituted or unsubstituted heteroalkyl, substituted or unsubstituted cycloalkyl, substituted or unsubstituted heterocycloalkyl, substituted or unsubstituted aryl, or substituted or unsubstituted heteroaryl; R1A, R1B, R1C, R1D, R2A, R2B, R2C, R2D, R3A, R3B, R3C, R3D, R4A, R4B, R4C, R4D, R5A, R5B, R5C, R5D, R6A, R6B, R6C, R6D, R7A, R7B, R7C, R7D, R8A, R8B, R8C, R8D, R9A, R9B, R9C, R9D, R10A, R10B, R10C, R10D, R11A, R11B, R11C, R11D, R12A, R12B, R12C, R12D, R13A, R13B, R13C, R13D, R14A, R14B, R14C and R14D are independently hydrogen, halogen, —CF3, —CCl3, —CBr3, —CI3, —OH, —NH2, —COOH, —CONH2, —NO2, —SH, —SO3H, —SO4H, —SO2NH2, —NHNH2, —ONH2, —NHC(O)NHNH2, —NHC(O)NH2, —NHSO2H, —NHC(O)H, —NHC(O)—OH, —NHOH, —OCF3, —OCCl3, —OCBr3, —OCI3, —OCHF2, —OCHCl2, —OCHBr2, —OCHI2, substituted or unsubstituted alkyl, substituted or unsubstituted heteroalkyl, substituted or unsubstituted cycloalkyl, substituted or unsubstituted heterocycloalkyl, substituted or unsubstituted aryl, or substituted or unsubstituted heteroaryl; R1B, R1C, R2B, R2C, R3B, R3C, R4B, R4C, R5B, R5C, R6B, R6C, R7B, R7C, R8B, R8C, R9B, R9C, R10B, R10C, R11B, R11C, R12B, R12C, R13B, R13C, R14B and R14C substituents bonded to the same nitrogen atom may optionally be joined to form a substituted or unsubstituted heterocycloalkyl or substituted or unsubstituted heteroaryl; and X1,1, X2,1, X3,1, X4,1, X5,1, X6,1, X7,1, X8,1, X9,1, X10,1, X11,1, X12,1, X13,1 and X14,1 are independently —Cl, —Br, —I or —F.


Embodiment P8. The pharmaceutical composition of embodiment P7, wherein R6, R7, R8 and R9 are independently hydrogen.


Embodiment P9. The pharmaceutical composition of embodiment PI, wherein at least two of R1, R2, R3, R4, R5 are independently hydrogen.


Embodiment P10. The pharmaceutical composition of embodiment P9, wherein: R1 is hydrogen, halogen —NO2, —NR1BR1C, NR1BC(O)R1D or substituted or unsubstituted alkyl; R2 is hydrogen, halogen —NO2, —NR2BR2C, NR2BC(O)R2D or substituted or unsubstituted alkyl; R3 is hydrogen, halogen —NO2, —NR3BR3C, NR3BC(O)R3D or substituted or unsubstituted alkyl; R4 is hydrogen, halogen —NO2, —NR4BR4C, NR4BC(O)R4D or substituted or unsubstituted alkyl; R5 is hydrogen, halogen —NO2, —NR5BR5C, NR5BC(O)R5D or substituted or unsubstituted alkyl; and R15 is independently hydrogen or substituted or unsubstituted alkyl.


Embodiment PI 1. The pharmaceutical composition of embodiment P10, wherein R10, R11, R12, R13 and R14 are independently hydrogen.


Embodiment P12. The composition of embodiment PI 1, wherein: R1, R2 and R4 are independently hydrogen; R3 is —NO2; and R5 is —NH2.


Embodiment P13. A method of treating constipation, comprising administering to a subject in need thereof a therapeutically effective amount of a compound of structural Formula (I):




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or a pharmaceutically acceptable salt thereof, wherein: L1 is —O—, —S—, —NR15— (e.g —NH—), C(O)NR15—, substituted or unsubstituted alkylene or substituted or unsubstituted heteroalkylene; n1 is an integer from 0 to 4; m1 and v1 are independently 1 or 2; R1 is hydrogen, halogen, —CX1,13, —CHX1,12, —CH2X1,1, —CN, —SOn1R1A, —SOv1NR1BR1C, —NHNR1BR1C, —ONR1BR1C, —NHC(O)NHNR1BR1C, —NHC(O)NR1BR1C, —N(O)m1, —NR1BR1C, —C(O)R1D, —C(O)OR1D, —C(O)NR1BR1C, —OR1A, —NR1BSO2R1A, —NR1BC(O)R1D, —NR1BC(O)OR1D, —NR1BOR1D, —OCX1,13, —OCHX1,12, substituted or unsubstituted alkyl, substituted or unsubstituted heteroalkyl, substituted or unsubstituted cycloalkyl, substituted or unsubstituted heterocycloalkyl, substituted or unsubstituted aryl, or substituted or unsubstituted heteroaryl; R2 is hydrogen, halogen, —CX2,13, —CHX2,12, —CH2X2,1, —CN, —SOn1R2A, —SOv1NR2BR2C, —NHNR2BR2C, —ONR2BR2C, —NHC(O)NHNR2BR2C, —NHC(O)NR2BR2C, —N(O)m1, —NR2BR2C, —C(O)R2D, —C(O)OR2D, —C(O)NR2BR2C, —OR2A, —NR2BSO2R2A, —NR2BC(O)R2D, —NR2BC(O)OR2D, —NR2BOR2D, —OCX2,13, —OCHX2,12, substituted or unsubstituted alkyl, substituted or unsubstituted heteroalkyl, substituted or unsubstituted cycloalkyl, substituted or unsubstituted heterocycloalkyl, substituted or unsubstituted aryl, or substituted or unsubstituted heteroaryl; R3 is hydrogen, halogen, —CX3,13, —CHX3,12, —CH2X3,1, —CN, —SOn1R3A, —SOv1NR3BR3C, —NHNR3BR3C, —ONR3BR3C, —NHC(O)NHNR3BR3C, —NHC(O)NR3BR3C, —N(O)m1, —NR3BR3C, —C(O)R3D, —C(O)OR3D, —C(O)NR3BR3C, —OR3A, —NR3BSO2R3A, —NR3BC(O)R3D, —NR3BC(O)OR3D, —NR3BOR3D, —OCX3,13, —OCHX3,12, substituted or unsubstituted alkyl, substituted or unsubstituted heteroalkyl, substituted or unsubstituted cycloalkyl, substituted or unsubstituted heterocycloalkyl, substituted or unsubstituted aryl, or substituted or unsubstituted heteroaryl; R4 is hydrogen, halogen, —CX4,13, —CHX4,12, —CH2X4,1, —CN, —SOn1R4A, —SOv1NR4BR4C, —NHNR4BR4C, —ONR4BR4C, —NHC(O)NHNR4BR4C, —NHC(O)NR4BR4C, —N(O)m1, —NR4BR4C, —C(O)R4D, —C(O)OR4D, —C(O)NR4BR4C, —OR4A, —NR4BSO2R4A, —NR4BC(O)R4D, —NR4BC(O)OR4D, —NR4BOR4D, —OCX4,13, —OCHX4,12, substituted or unsubstituted alkyl, substituted or unsubstituted heteroalkyl, substituted or unsubstituted cycloalkyl, substituted or unsubstituted heterocycloalkyl, substituted or unsubstituted aryl, or substituted or unsubstituted heteroaryl; R5 is hydrogen, halogen, —CX5,13, —CHX5,12, —CH2X5,1, —CN, —SOn1R5A, —SOv1NR5BR5C, —NHNR5BR5C, —ONR5BR5C, —NHC(O)NHNR5BR5C, —NHC(O)NR5BR5C, —N(O)m1, —NR5BR5C, —C(O)R5D, —C(O)OR5D, —C(O)NR5BR5C, —OR5A, —NR5BSO2R5A, —NR5BC(O)R5D, —NR5BC(O)OR5D, —NR5BOR5D, —OCX5,13, —OCHX5,12, substituted or unsubstituted alkyl, substituted or unsubstituted heteroalkyl, substituted or unsubstituted cycloalkyl, substituted or unsubstituted heterocycloalkyl, substituted or unsubstituted aryl, or substituted or unsubstituted heteroaryl; R6 is hydrogen, halogen, —CX6,13, —CHX6,12, —CH2X6,1, —CN, —SOn1R6A, —SOv1NR6BR6C, —NHNR6BR6C, —ONR6BR6C, —NHC(O)NHNR6BR6C, —NHC(O)NR6BR6C, —N(O)m1, —NR6BR6C, —C(O)R6D, —C(O)OR6D, —C(O)NR6BR6C, —OR6A, —NR6BSO2R6A, —NR6BC(O)R6D, —NR6BC(O)OR6D, —NR6BOR6D, —OCX6,13, —OCHX6,12, substituted or unsubstituted alkyl, substituted or unsubstituted heteroalkyl, substituted or unsubstituted cycloalkyl, substituted or unsubstituted heterocycloalkyl, substituted or un substituted aryl, or substituted or unsubstituted heteroaryl; R7 is hydrogen, halogen, —CX7,13, —CHX7,12, —CH2X7,1, —CN, —SOn1R7A, —SOv1NR7BR7C, —NHNR7BR7C, —ONR7BR7C, —NHC(O)NHNR7BR7C, —NHC(O)NR7BR7C, —N(O)m1, —NR7BR7C, —C(O)R7D, —C(O)OR7D, —C(O)NR7BR7C, —OR7A, —NR7BSO2R7A, —NR7AC(O)R7C, —NR7BC(O)OR7D, —NR7BOR7D, —OCX7,13, —OCHX7,12, substituted or unsubstituted alkyl, substituted or unsubstituted heteroalkyl, substituted or unsubstituted cycloalkyl, substituted or unsubstituted heterocycloalkyl, substituted or unsubstituted aryl, or substituted or unsubstituted heteroaryl; R8 is hydrogen, halogen, —CX8,13, —CHX8,12, —CH2X8,1, —CN, —SOn1R8A, —SOv1NR8BR8C, —NHNR8BR8C, —ONR8BR8C, —NHC(O)NHNR8BR8C, —NHC(O)NR8BR8C, —N(O)m1, —NR8BR8C, —C(O)R8D, —C(O)OR8D, —C(O)NR8BR8C, —OR8A, —NR8BSO2R8A, —NR8BC(O)R8D, —NR8BC(O)OR8D, —NR8BOR8D, —OCX8,13, —OCHX8,12, substituted or unsubstituted alkyl, substituted or unsubstituted heteroalkyl, substituted or unsubstituted cycloalkyl, substituted or unsubstituted heterocycloalkyl, substituted or unsubstituted aryl, or substituted or unsubstituted heteroaryl; R9 is hydrogen, halogen, —CX9,13, —CHX9,12, —CH2X9,1, —CN, —SOn1R9A, —SOv1NR9BR9C, —NHNR9BR9C, —ONR9BR9C, —NHC(O)NHNR9BR9C, —NHC(O)NR9BR9C, —N(O)m1, —NR9BR9C, —C(O)R9D, —C(O)OR9D, —C(O)NR9BR9C, —OR9A, —NR9BSO2R9A, —NR9BC(O)R9D, —NR9BC(O)OR9D, —NR9BOR9D, —OCX9,13, —OCHX9,12, substituted or unsubstituted alkyl, substituted or unsubstituted heteroalkyl, substituted or unsubstituted cycloalkyl, substituted or unsubstituted heterocycloalkyl, substituted or unsubstituted aryl, or substituted or unsubstituted heteroaryl; R10 is hydrogen, halogen, —CX10,13, —CHX10,12, —CH2X10,1, —CN, —SOn1R10A, —SOv1NR10BR10C, —NHNR10BR10C, —ONR10BR10C, —NHC(O)NHNR10BR10C, —NHC(O)NR10BR10C, —N(O)m1, —NR10BR10C, —C(O)R10D, —C(O)OR10D, —C(O)NR10BR10C, —OR10A, —NR10BSO2R10A, —NR10BC(O)R10D, —NR10BC(O)OR10D, —NR10BOR10D, —OCX10,13, —OCHX10,12, substituted or unsubstituted alkyl, substituted or unsubstituted heteroalkyl, substituted or unsubstituted cycloalkyl, substituted or unsubstituted heterocycloalkyl, substituted or unsubstituted aryl, or substituted or unsubstituted heteroaryl; R11 is hydrogen, halogen, —CX11,13, —CHX11,12, —CH2X11,1, —CN, —SOn1R11A, —SOv1NR11BR11C, —NHNR11BR11C, —ONR11BR11C, —NHC(O)NHNR11BR11C, —NHC(O)NR11BR11C, —N(O)m1, —NR11BR11C, —C(O)R11D, —C(O)OR11D, —C(O)NR11BR11C, —OR11A, —NR11BSO2R11A, —NR11BC(O)R11D, —NR11BC(O)OR11D, —NR11BOR11D, —OCX11,13, —OCHX11,12, substituted or unsubstituted alkyl, substituted or unsubstituted heteroalkyl, substituted or unsubstituted cycloalkyl, substituted or unsubstituted heterocycloalkyl, substituted or unsubstituted aryl, or substituted or unsubstituted heteroaryl; R12 is hydrogen, halogen, —CX12,13, —CHX12,12, —CH2X12,1, —CN, —SOn1R12A, —SOv1NR12BR12C, —NHNR12BR12C, —ONR12BR12C, —NHC(O)NHNR12BR12C, —NHC(O)NR12BR12C, —N(O)m1, —NR12BR12C, —C(O)R12D, —C(O)OR12D, —C(O)NR12BR12C, —OR12A, —NR12BSO2R12A, —NR12BC(O)R12D, —NR12BC(O)OR12D, —NR12BOR12D, —OCX12,13, —OCHX12,12, substituted or unsubstituted alkyl, substituted or unsubstituted heteroalkyl, substituted or unsubstituted cycloalkyl, substituted or unsubstituted heterocycloalkyl, substituted or unsubstituted aryl, or substituted or unsubstituted heteroaryl; R13 is hydrogen, halogen, —CX13,13, —CHX13,12, —CH2X13,1, —CN, —SOn1R13A, —SOv1NR13BR13C, —NHNR13BR13C, —ONR13BR13C, —NHC(O)NHNR13BR13C, —NHC(O)NR13BR13C, —N(O)m1, —NR13BR13C, —C(O)R13D, —C(O)OR13D, —C(O)NR13BR13C, —OR13A, —NR13BSO2R13A, —NR13BC(O)R13D, —NR13BC(O)OR13D, —NR13BOR13D, —OCX13,13, —OCHX13,12, substituted or unsubstituted alkyl, substituted or unsubstituted heteroalkyl, substituted or unsubstituted cycloalkyl, substituted or unsubstituted heterocycloalkyl, substituted or unsubstituted aryl, or substituted or unsubstituted heteroaryl; R14 is hydrogen, halogen, —CX14,13, —CHX14,12, —CH2X14,1, —CN, —SOn1R14A, —SOv1NR14BR14C, —NHNR14BR14C, —ONR14BR14C, —NHC(O)NHNR14BR14C, —NHC(O)NR14BR14C, —N(O)m1, —NR14BR14C, —C(O)R14D, —C(O)OR14D, —C(O)NR14BR14C, —OR14A, —NR14BSO2R14A, —NR14BC(O)R14D, —NR14BC(O)OR14D, —NR14BOR14D, —OCX14,13, —OCHX14,12, substituted or unsubstituted alkyl, substituted or unsubstituted heteroalkyl, substituted or unsubstituted cycloalkyl, substituted or unsubstituted heterocycloalkyl, substituted or unsubstituted aryl, or substituted or unsubstituted heteroaryl; R15 is hydrogen, substituted or unsubstituted alkyl, substituted or unsubstituted heteroalkyl, substituted or unsubstituted cycloalkyl, substituted or unsubstituted heterocycloalkyl, substituted or unsubstituted aryl, or substituted or unsubstituted heteroaryl; R1A, R1B, R1C, R1D, R2A, R2B, R2C, R2D, R3A, R3B, R3C, R3D, R4A, R4B, R4C, R4D, R5A, R5B, R5C, R5D, R6A, R6B, R6C, R6D, R7A, R7B, R7C, R7D, R8A, R8B, R8C, R8D, R9A, R9B, R9C, R9D, R10A, R10B, R10C, R10D, R11A, R11B, R11C, R11D, R12A, R12B, R12C, R12D, R13A, R13B, R13C, R13D, R14A, R14B, R14C and R14D are independently hydrogen, halogen, —CF3, —CCl3, —CBr3, —CI3, —OH, —NH2, —COOH, —CONH2, —NO2, —SH, —SO3H, —SO4H, —SO2NH2, —NHNH2, —ONH2, —NHC(O)NHNH2, —NHC(O)NH2, —NHSO2H, —NHC(O)H, —NHC(O)—OH, —NHOH, —OCF3, —OCCl3, —OCBr3, —OCI3, —OCHF2, —OCHCl2, —OCHBr2, —OCHI2, substituted or unsubstituted alkyl, substituted or unsubstituted heteroalkyl, substituted or unsubstituted cycloalkyl, substituted or unsubstituted heterocycloalkyl, substituted or unsubstituted aryl, or substituted or unsubstituted heteroaryl; R1B, R1C, R2B, R2C, R3B, R3C, R4B, R4C, R5B, R5C, R6B, R6C, R7B, R7C, R8B, R8C, R9B, R9C, R10B, R10C, R11B, R11C, R12B, R12C, R13B, R13C, R14B and R14C substituents bonded to the same nitrogen atom may optionally be joined to form a substituted or unsubstituted heterocycloalkyl or substituted or unsubstituted heteroaryl; and X1,1, X2,1, X3,1, X4,1, X5,1, X6,1, X7,1, X8,1, X9,1, X10,1, X11,1, X12,1, X13,1 and X14,1 are independently —Cl, —Br, —I or —F.


Embodiment P14. The method of embodiment P13, further comprising administering to the subject an anti-constipation agent.


Embodiment P15. The method of embodiment P13, wherein the compound is administered orally.


Embodiment P16. The method of embodiment P13, wherein the constipation is opioid-induced constipation, chronic idiopathic constipation or irritable bowel syndrome with constipation predominance.


Embodiment P17. A method of treating a dry eye disorder, comprising administering to a subject in need thereof a therapeutically effective amount a compound of structural Formula (I):




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or a pharmaceutically acceptable salt thereof, wherein: L1 is —O—, —S—, —NR15— (e.g —NH—), —C(O)NR15—, substituted or unsubstituted alkylene or substituted or unsubstituted heteroalkylene; n1 is an integer from 0 to 4; m1 and v1 are independently 1 or 2; R1 is hydrogen, halogen, —CX1,13, —CHX1,12, —CH2X1,1, —CN, —SOn1R1A, —SOv1NR1BR1C, —NHNR1BR1C, —ONR1BR1C, —NHC(O)NHNR1BR1C, —NHC(O)NR1BR1C, —N(O)m1, —NR1BR1C, —C(O)R1D, —C(O)OR1D, —C(O)NR1BR1C, —OR1A, —NR1BSO2R1A, —NR1BC(O)R1D, —NR1BC(O)OR1D, —NR1BOR1D, —OCX1,13, —OCHX1,12, substituted or unsubstituted alkyl, substituted or unsubstituted heteroalkyl, substituted or unsubstituted cycloalkyl, substituted or unsubstituted heterocycloalkyl, substituted or unsubstituted aryl, or substituted or unsubstituted heteroaryl; R2 is hydrogen, halogen, —CX2,13, —CHX2,12, —CH2X2,1, —CN, —SOn1R2A, —SOv1NR2BR2C, —NHNR2BR2C, —ONR2BR2C, —NHC(O)NHNR2BR2C, —NHC(O)NR2BR2C, —N(O)m1, —NR2BR2C, —C(O)R2D, —C(O)OR2D, —C(O)NR2BR2C, —OR2A, —NR2BSO2R2A, —NR2BC(O)R2D, —NR2BC(O)OR2D, —NR2BOR2D, —OCX2,13, —OCHX2,12, substituted or unsubstituted alkyl, substituted or unsubstituted heteroalkyl, substituted or unsubstituted cycloalkyl, substituted or unsubstituted heterocycloalkyl, substituted or unsubstituted aryl, or substituted or unsubstituted heteroaryl; R3 is hydrogen, halogen, —CX3,13, —CHX3,12, —CH2X3,1, —CN, —SOn1R3A, —SOv1NR3BR3C, —NHNR3BR3C, —ONR3BR3C, —NHC(O)NHNR3BR3C, —NHC(O)NR3BR3C, —N(O)m1, —NR3BR3C, —C(O)R3D, —C(O)OR3D, —C(O)NR3BR3C, —OR3A, —NR3BSO2R3A, —NR3BC(O)R3D, —NR3BC(O)OR3D, —NR3BOR3D, —OCX3,13, —OCHX3,12, substituted or unsubstituted alkyl, substituted or unsubstituted heteroalkyl, substituted or unsubstituted cycloalkyl, substituted or unsubstituted heterocycloalkyl, substituted or unsubstituted aryl, or substituted or unsubstituted heteroaryl; R4 is hydrogen, halogen, —CX4,13, —CHX4,12, —CH2X4,1, —CN, —SOn1R4A, —SOv1NR4BR4C, —NHNR4BR4C, —ONR4BR4C, —NHC(O)NHNR4BR4C, —NHC(O)NR4BR4C, —N(O)m1, —NR4BR4C, —C(O)R4D, —C(O)OR4D, —C(O)NR4BR4C, —OR4A, —NR4BSO2R4A, —NR4BC(O)R4D, —NR4BC(O)OR4D, —NR4BOR4D, —OCX4,13, —OCHX4,12, substituted or unsubstituted alkyl, substituted or unsubstituted heteroalkyl, substituted or unsubstituted cycloalkyl, substituted or unsubstituted heterocycloalkyl, substituted or unsubstituted aryl, or substituted or unsubstituted heteroaryl; R5 is hydrogen, halogen, —CX5,13, —CHX5,12, —CH2X5,1, —CN, —SOn1R5A, —SOv1NR5BR5C, —NHNR5BR5C, —ONR5BR5C, —NHC(O)NHNR5BR5C, —NHC(O)NR5BR5C, —N(O)m1, —NR5BR5C, —C(O)R5D, —C(O)OR5D, —C(O)NR5BR5C, —OR5A, —NR5BSO2R5A, —NR5BC(O)R5D, —NR5BC(O)OR5D, —NR5BOR5D, —OCX5,13, —OCHX5,12, substituted or unsubstituted alkyl, substituted or unsubstituted heteroalkyl, substituted or unsubstituted cycloalkyl, substituted or unsubstituted heterocycloalkyl, substituted or unsubstituted aryl, or substituted or unsubstituted heteroaryl; R6 is hydrogen, halogen, —CX6,13, —CHX6,12, —CH2X6,1, —CN, —SOn1R6A, —SOv1NR6BR6C, —NHNR6BR6C, —ONR6BR6C, —NHC(O)NHNR6BR6C, —NHC(O)NR6BR6C, —N(O)m1, —NR6BR6C, —C(O)R6D, —C(O)OR6D, —C(O)NR6BR6C, —OR6A, —NR6BSO2R6A, —NR6BC(O)R6D, —NR6BC(O)OR6D, —NR6BOR6D, —OCX6,13, —OCHX6,12, substituted or unsubstituted alkyl, substituted or unsubstituted heteroalkyl, substituted or unsubstituted cycloalkyl, substituted or unsubstituted heterocycloalkyl, substituted or unsubstituted aryl, or substituted or unsubstituted heteroaryl; R7 is hydrogen, halogen, —CX7,13, —CHX7,12, —CH2X7,1, —CN, —SOn1R7A, —SOv1NR7BR7C, —NHNR7BR7C, —ONR7BR7C, —NHC(O)NHNR7BR7C, —NHC(O)NR7BR7C, —N(O)m1, —NR7BR7C, —C(O)R7D, —C(O)OR7D, —C(O)NR7BR7C, —OR7A, —NR7BSO2R7A, —NR7AC(O)R7C, —NR7BC(O)OR7D, —NR7BOR7D, —OCX7,13, —OCHX7,12, substituted or unsubstituted alkyl, substituted or unsubstituted heteroalkyl, substituted or unsubstituted cycloalkyl, substituted or unsubstituted heterocycloalkyl, substituted or unsubstituted aryl, or substituted or unsubstituted heteroaryl; R8 is hydrogen, halogen, —CX8,13, —CHX8,12, —CH2X8,1, —CN, —SOn1R8A, —SOv1NR8BR8C, —NHNR8BR8C, —ONR8BR8C, —NHC(O)NHNR8BR8C, —NHC(O)NR8BR8C, —N(O)m1, —NR8BR8C, —C(O)R8D, —C(O)OR8D, —C(O)NR8BR8C, —OR8A, —NR8BSO2R8A, —NR8BC(O)R8D, —NR8BC(O)OR8D, —NR8BOR8D, —OCX8,13, —OCHX8,12, substituted or unsubstituted alkyl, substituted or unsubstituted heteroalkyl, substituted or unsubstituted cycloalkyl, substituted or unsubstituted heterocycloalkyl, substituted or unsubstituted aryl, or substituted or unsubstituted heteroaryl; R9 is hydrogen, halogen, —CX9,13, —CHX9,12, —CH2X9,1, —CN, —SOn1R9A, —SOv1NR9BR9C, —NHNR9BR9C, —ONR9BR9C, —NHC(O)NHNR9BR9C, —NHC(O)NR9BR9C, —N(O)m1, —NR9BR9C, —C(O)R9D, —C(O)OR9D, —C(O)NR9BR9C, —OR9A, —NR9BSO2R9A, —NR9BC(O)R9D, —NR9BC(O)OR9D, —NR9BOR9D, —OCX9,13, —OCHX9,12, substituted or unsubstituted alkyl, substituted or unsubstituted heteroalkyl, substituted or unsubstituted cycloalkyl, substituted or unsubstituted heterocycloalkyl, substituted or unsubstituted aryl, or substituted or unsubstituted heteroaryl; R10 is hydrogen, halogen, —CX10,13, —CHX10,12, —CH2X10,1, —CN, —SOn1R10A, —SOv1NR10BR10C, —NHNR10BR10C, —ONR10BR10C, —NHC(O)NHNR10BR10C, —NHC(O)NR10BR10C, —N(O)m1, —NR10BR10C, —C(O)R10D, —C(O)OR10D, —C(O)NR10BR10C, —OR10A, —NR10BSO2R10A, —NR10BC(O)R10D, —NR10BC(O)OR10D, —NR10BOR10D, —OCX10,13, —OCHX10,12, substituted or unsubstituted alkyl, substituted or unsubstituted heteroalkyl, substituted or unsubstituted cycloalkyl, substituted or unsubstituted heterocycloalkyl, substituted or unsubstituted aryl, or substituted or unsubstituted heteroaryl; R11 is hydrogen, halogen, —CX11,13, —CHX11,12, —CH2X11,1, —CN, —SOn1R11A, —SOv1NR11BR11C, —NHNR11BR11C, —ONR11BR11C, —NHC(O)NHNR11BR11C, —NHC(O)NR11BR11C, —N(O)m1, —NR11BR11C, —C(O)R11D, —C(O)OR11D, —C(O)NR11BR11C, —OR11A, —NR11BSO2R11A, —NR11BC(O)R11D, —NR11BC(O)OR11D, —NR11BOR11D, —OCX11,13, —OCHX11,12, substituted or unsubstituted alkyl, substituted or unsubstituted heteroalkyl, substituted or unsubstituted cycloalkyl, substituted or unsubstituted heterocycloalkyl, substituted or unsubstituted aryl, or substituted or unsubstituted heteroaryl; R12 is hydrogen, halogen, —CX12,13, —CHX12,12, —CH2X12,1, —CN, —SOn1R12A, —SOv1NR12BR12C, —NHNR12BR12C, —ONR12BR12C, —NHC(O)NHNR12BR12C, —NHC(O)NR12BR12C, —N(O)m1, —NR12BR12C, —C(O)R12D, —C(O)OR12D, —C(O)NR12BR12C, —OR12A, —NR12BSO2R12A, —NR12BC(O)R12D, —NR12BC(O)OR12D, —NR12BOR12D, —OCX12,13, —OCHX12,12, substituted or unsubstituted alkyl, substituted or unsubstituted heteroalkyl, substituted or unsubstituted cycloalkyl, substituted or unsubstituted heterocycloalkyl, substituted or unsubstituted aryl, or substituted or unsubstituted heteroaryl; R13 is hydrogen, halogen, —CX13,13, —CHX13,12, —CH2X13,1, —CN, —SOn1R13A, —SOv1NR13BR13C, —NHNR13BR13C, —ONR13BR13C, —NHC(O)NHNR13BR13C, —NHC(O)NR13BR13C, —N(O)m1, —NR13BR13C, —C(O)R13D, —C(O)OR13D, —C(O)NR13BR13C, —OR13A, —NR13BSO2R13A, —NR13BC(O)R13D, —NR13BC(O)OR13D, —NR13BOR13D, —OCX13,13, —OCHX13,12, substituted or unsubstituted alkyl, substituted or unsubstituted heteroalkyl, substituted or unsubstituted cycloalkyl, substituted or unsubstituted heterocycloalkyl, substituted or unsubstituted aryl, or substituted or unsubstituted heteroaryl; R14 is hydrogen, halogen, —CX14,13, —CHX14,12, —CH2X14,1, —CN, —SOn1R14A, —SOv1NR14BR14C, —NHNR14BR14C, —ONR14BR14C, —NHC(O)NHNR14BR14C, —NHC(O)NR14BR14C, —N(O)m1, —NR14BR14C, —C(O)R14D, —C(O)OR14D, —C(O)NR14BR14C, —OR14A, —NR14BSO2R14A, —NR14BC(O)R14D, —NR14BC(O)OR14D, —NR14BOR14D, —OCX14,13, —OCHX14,12, substituted or unsubstituted alkyl, substituted or unsubstituted heteroalkyl, substituted or unsubstituted cycloalkyl, substituted or unsubstituted heterocycloalkyl, substituted or unsubstituted aryl, or substituted or unsubstituted heteroaryl; R15 is hydrogen, substituted or unsubstituted alkyl, substituted or unsubstituted heteroalkyl, substituted or unsubstituted cycloalkyl, substituted or unsubstituted heterocycloalkyl, substituted or unsubstituted aryl, or substituted or unsubstituted heteroaryl; R1A, R1B, R1C, R1D, R2A, R2B, R2C, R2D, R3A, R3B, R3C, R3D, R4A, R4B, R4C, R4D, R5A, R5B, R5C, R5D, R6A, R6B, R6C, R6D, R7A, R7B, R7C, R7D, R8A, R8B, R8C, R8D, R9A, R9B, R9C, R9D, R10A, R10B, R10C, R10D, R11A, R11B, R11C, R11D, R12A, R12B, R12C, R12D, R13A, R13B, R13C, R13D, R14A, R14B, R14C and R14D are independently hydrogen, halogen, —CF3, —CCl3, —CBr3, —CI3, —OH, —NH2, —COOH, —CONH2, —NO2, —SH, —SO3H, —SO4H, —SO2NH2, —NHNH2, —ONH2, —NHC(O)NHNH2, —NHC(O)NH2, —NHSO2H, —NHC(O)H, —NHC(O)—OH, —NHOH, —OCF3, —OCCl3, —OCBr3, —OCI3, —OCHF2, —OCHCl2, —OCHBr2, —OCHI2, substituted or unsubstituted alkyl, substituted or unsubstituted heteroalkyl, substituted or unsubstituted cycloalkyl, substituted or unsubstituted heterocycloalkyl, substituted or unsubstituted aryl, or substituted or unsubstituted heteroaryl; R1B, R1C, R2B, R2C, R3B, R3C, R4B, R4C, R5B, R5C, R6B, R6C, R7B, R7C, R8B, R8C, R9B, R9C, R10B, R10C, R11B, R11C, R12B, R12C, R13B, R13C, R14B and R14C substituents bonded to the same nitrogen atom may optionally be joined to form a substituted or unsubstituted heterocycloalkyl or substituted or unsubstituted heteroaryl; and X1,1, X2,1, X3,1, X4,1, X5,1, X6,1, X7,1, X8,1, X9,1, X10,1, X11,1, X12,1, X13,1, and X14,1 are independently —Cl, —Br, —I or —F.


Embodiment P18. The method of embodiment P17, wherein the dry eye disorder is a lacrimal gland disorder.


Embodiment P19. The method of embodiment P17, further comprising administering to the subject an anti-dry eye agent.


Embodiment P20. A method of increasing lacrimation, comprising administering to a subject in need thereof a therapeutically effective amount of a compound of structural Formula (I):




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or a pharmaceutically acceptable salt thereof, wherein: L1 is —O—, —S—, —NR15— (e.g —NH—), —C(O)NR15—, substituted or unsubstituted alkylene or substituted or unsubstituted heteroalkylene; n1 is an integer from 0 to 4; m1 and v1 are independently 1 or 2; R1 is hydrogen, halogen, —CX1,13, —CHX1,12, —CH2X1,1, —CN, —SOn1R1A, —SOv1NR1BR1C, —NHNR1BR1C, —ONR1BR1C, —NHC(O)NHNR1BR1C, —NHC(O)NR1BR1C, —N(O)m1, —NR1BR1C, —C(O)R1D, —C(O)OR1D, —C(O)NR1BR1C, —OR1A, —NR1BSO2R1A, —NR1BC(O)R1D, —NR1BC(O)OR1D, —NR1BOR1D, —OCX1,13, —OCHX1,12, substituted or unsubstituted alkyl, substituted or unsubstituted heteroalkyl, substituted or unsubstituted cycloalkyl, substituted or unsubstituted heterocycloalkyl, substituted or unsubstituted aryl, or substituted or unsubstituted heteroaryl; R2 is hydrogen, halogen, —CX2,13, —CHX2,12, —CH2X2,1, —CN, —SOn1R2A, —SOv1NR2BR2C, —NHNR2BR2C, —ONR2BR2C, —NHC(O)NHNR2BR2C, —NHC(O)NR2BR2C, —N(O)m1, —NR2BR2C, —C(O)R2D, —C(O)OR2D, —C(O)NR2BR2C, —OR2A, —NR2BSO2R2A, —NR2BC(O)R2D, —NR2BC(O)OR2D, —NR2BOR2D, —OCX2,13, —OCHX2,12, substituted or unsubstituted alkyl, substituted or unsubstituted heteroalkyl, substituted or unsubstituted cycloalkyl, substituted or unsubstituted heterocycloalkyl, substituted or unsubstituted aryl, or substituted or unsubstituted heteroaryl; R3 is hydrogen, halogen, —CX3,13, —CHX3,12, —CH2X3,1, —CN, —SOn1R3A, —SOv1NR3BR3C, —NHNR3BR3C, —ONR3BR3C, —NHC(O)NHNR3BR3C, —NHC(O)NR3BR3C, —N(O)m1, —NR3BR3C, —C(O)R3D, —C(O)OR3D, —C(O)NR3BR3C, —OR3A, —NR3BSO2R3A, —NR3BC(O)R3D, —NR3BC(O)OR3D, —NR3BOR3D, —OCX3,13, —OCHX3,12, substituted or unsubstituted alkyl, substituted or unsubstituted heteroalkyl, substituted or unsubstituted cycloalkyl, substituted or unsubstituted heterocycloalkyl, substituted or unsubstituted aryl, or substituted or unsubstituted heteroaryl; R4 is hydrogen, halogen, —CX4,13, —CHX4,12, —CH2X4,1, —CN, —SOn1R4A, —SOv1NR4BR4C, —NHNR4BR4C, —ONR4BR4C, —NHC(O)NHNR4BR4C, —NHC(O)NR4BR4C, —N(O)m1, —NR4BR4C, —C(O)R4D, —C(O)OR4D, —C(O)NR4BR4C, —OR4A, —NR4BSO2R4A, —NR4BC(O)R4D, —NR4BC(O)OR4D, —NR4BOR4D, —OCX4,13, —OCHX4,12, substituted or unsubstituted alkyl, substituted or unsubstituted heteroalkyl, substituted or unsubstituted cycloalkyl, substituted or unsubstituted heterocycloalkyl, substituted or unsubstituted aryl, or substituted or unsubstituted heteroaryl; R5 is hydrogen, halogen, —CX5,13, —CHX5,12, —CH2X5,1, —CN, —SOn1R5A, —SOv1NR5BR5C, —NHNR5BR5C, —ONR5BR5C, —NHC(O)NHNR5BR5C, —NHC(O)NR5BR5C, —N(O)m1, —NR5BR5C, —C(O)R5D, —C(O)OR5D, —C(O)NR5BR5C, —OR5A, —NR5BSO2R5A, —NR5BC(O)R5D, —NR5BC(O)OR5D, —NR5BOR5D, —OCX5,13, —OCHX5,12, substituted or unsubstituted alkyl, substituted or unsubstituted heteroalkyl, substituted or unsubstituted cycloalkyl, substituted or unsubstituted heterocycloalkyl, substituted or unsubstituted aryl, or substituted or unsubstituted heteroaryl; R6 is hydrogen, halogen, —CX6,13, —CHX6,12, —CH2X6,1, —CN, —SOn1R6A, —SOv1NR6BR6C, —NHNR6BR6C, —ONR6BR6C, —NHC(O)NHNR6BR6C, —NHC(O)NR6BR6C, —N(O)m1, —NR6BR6C, —C(O)R6D, —C(O)OR6D, —C(O)NR6BR6C, —OR6A, —NR6BSO2R6A, —NR6BC(O)R6D, —NR6BC(O)OR6D, —NR6BOR6D, —OCX6,13, —OCHX6,12, substituted or unsubstituted alkyl, substituted or unsubstituted heteroalkyl, substituted or unsubstituted cycloalkyl, substituted or unsubstituted heterocycloalkyl, substituted or unsubstituted aryl, or substituted or unsubstituted heteroaryl; R7 is hydrogen, halogen, —CX7,13, —CHX7,12, —CH2X7,1, —CN, —SOn1R7A, —SOv1NR7BR7C, —NHNR7BR7C, —ONR7BR7C, —NHC(O)NHNR7BR7C, —NHC(O)NR7BR7C, —N(O)m1, —NR7BR7C, —C(O)R7D, —C(O)OR7D, —C(O)NR7BR7C, —OR7A, —NR7BSO2R7A, —NR7AC(O)R7C, —NR7BC(O)OR7D, —NR7BOR7D, —OCX7,13, —OCHX7,12, substituted or unsubstituted alkyl, substituted or unsubstituted heteroalkyl, substituted or unsubstituted cycloalkyl, substituted or unsubstituted heterocycloalkyl, substituted or unsubstituted aryl, or substituted or unsubstituted heteroaryl; R8 is hydrogen, halogen, —CX8,13, —CHX8,12, —CH2X8,1, —CN, —SOn1R8A, —SOv1NR8BR8C, —NHNR8BR8C, —ONR8BR8C, —NHC(O)NHNR8BR8C, —NHC(O)NR8BR8C, —N(O)m1, —NR8BR8C, —C(O)R8D, —C(O)OR8D, —C(O)NR8BR8C, —OR8A, —NR8BSO2R8A, —NR8BC(O)R8D, —NR8BC(O)OR8D, —NR8BOR8D, —OCX8,13, —OCHX8,12, substituted or unsubstituted alkyl, substituted or unsubstituted heteroalkyl, substituted or unsubstituted cycloalkyl, substituted or unsubstituted heterocycloalkyl, substituted or unsubstituted aryl, or substituted or unsubstituted heteroaryl; R9 is hydrogen, halogen, —CX9,13, —CHX9,12, —CH2X9,1, —CN, —SOn1R9A, —SOv1NR9BR9C, —NHNR9BR9C, —ONR9BR9C, —NHC(O)NHNR9BR9C, —NHC(O)NR9BR9C, —N(O)m1, —NR9BR9C, —C(O)R9D, —C(O)OR9D, —C(O)NR9BR9C, —OR9A, —NR9BSO2R9A, —NR9BC(O)R9D, —NR9BC(O)OR9D, —NR9BOR9D, —OCX9,13, —OCHX9,12, substituted or unsubstituted alkyl, substituted or unsubstituted heteroalkyl, substituted or unsubstituted cycloalkyl, substituted or unsubstituted heterocycloalkyl, substituted or unsubstituted aryl, or substituted or unsubstituted heteroaryl; R10 is hydrogen, halogen, —CX10,13, —CHX10,12, —CH2X10,1, —CN, —SOn1R10A, —SOv1NR10BR10C, —NHNR10BR10C, —ONR10BR10C, —NHC(O)NHNR10BR10C, —NHC(O)NR10BR10C, —N(O)m1, —NR10BR10C, —C(O)R10D, —C(O)OR10D, —C(O)NR10BR10C, —OR10A, —NR10BSO2R10A, —NR10BC(O)R10D, —NR10BC(O)OR10D, —NR10BOR10D, —OCX10,13, —OCHX10,12, substituted or unsubstituted alkyl, substituted or unsubstituted heteroalkyl, substituted or unsubstituted cycloalkyl, substituted or unsubstituted heterocycloalkyl, substituted or unsubstituted aryl, or substituted or unsubstituted heteroaryl; R11 is hydrogen, halogen, —CX11,13, —CHX11,12, —CH2X11,1, —CN, —SOn1R11A, —SOv1NR11BR11C, —NHNR11BR11C, —ONR11BR11C, —NHC(O)NHNR11BR11C, —NHC(O)NR11BR11C, —N(O)m1, —NR11BR11C, —C(O)R11D, —C(O)OR11D, —C(O)NR11BR11C, —OR11A, —NR11BSO2R11A, —NR11BC(O)R11D, —NR11BC(O)OR11D, —NR11BOR11D, —OCX11,13, —OCHX11,12, substituted or unsubstituted alkyl, substituted or unsubstituted heteroalkyl, substituted or unsubstituted cycloalkyl, substituted or unsubstituted heterocycloalkyl, substituted or unsubstituted aryl, or substituted or unsubstituted heteroaryl; R12 is hydrogen, halogen, —CX12,13, —CHX12,12, —CH2X12,1, —CN, —SOn1R12A, —SOv1NR12BR12C, —NHNR12BR12C, —ONR12BR12C, —NHC(O)NHNR12BR12C, —NHC(O)NR12BR12C, —N(O)m1, —NR12BR12C, —C(O)R12D, —C(O)OR12D, —C(O)NR12BR12C, —OR12A, —NR12BSO2R12A, —NR12BC(O)R12D, —NR12BC(O)OR12D, —NR12BOR12D, —OCX12,13, —OCHX12,12, substituted or unsubstituted alkyl, substituted or unsubstituted heteroalkyl, substituted or unsubstituted cycloalkyl, substituted or unsubstituted heterocycloalkyl, substituted or unsubstituted aryl, or substituted or unsubstituted heteroaryl; R13 is hydrogen, halogen, —CX13,13, —CHX13,12, —CH2X13,1, —CN, —SOn1R13A, —SOv1NR13BR13C, —NHNR13BR13C, —ONR13BR13C, —NHC(O)NHNR13BR13C, —NHC(O)NR13BR13C, —N(O)m1, —NR13BR13C, —C(O)R13D, —C(O)OR13D, —C(O)NR13BR13C, —OR13A, —NR13BSO2R13A, —NR13BC(O)R13D, —NR13BC(O)OR13D, —NR13BOR13D, —OCX13,13, —OCHX13,12, substituted or unsubstituted alkyl, substituted or unsubstituted heteroalkyl, substituted or unsubstituted cycloalkyl, substituted or unsubstituted heterocycloalkyl, substituted or unsubstituted aryl, or substituted or unsubstituted heteroaryl; R14 is hydrogen, halogen, —CX14,13, —CHX14,12, —CH2X14,1, —CN, —SOn1R14A, —SOv1NR14BR14C, —NHNR14BR14C, —ONR14BR14C, —NHC(O)NHNR14BR14C, —NHC(O)NR14BR14C, —N(O)m1, —NR14BR14C, —C(O)R14D, —C(O)OR14D, —C(O)NR14BR14C, —OR14A, —NR14BSO2R14A, —NR14BC(O)R14D, —NR14BC(O)OR14D, —NR14BOR14D, —OCX14,13, —OCHX14,12, substituted or unsubstituted alkyl, substituted or unsubstituted heteroalkyl, substituted or unsubstituted cycloalkyl, substituted or unsubstituted heterocycloalkyl, substituted or unsubstituted aryl, or substituted or unsubstituted heteroaryl; R15 is hydrogen, substituted or unsubstituted alkyl, substituted or unsubstituted heteroalkyl, substituted or unsubstituted cycloalkyl, substituted or unsubstituted heterocycloalkyl, substituted or unsubstituted aryl, or substituted or unsubstituted heteroaryl; R1A, R1B, R1C, R1D, R2A, R2B, R2C, R2D, R3A, R3B, R3C, R3D, R4A, R4B, R4C, R4D, R5A, R5B, R5C, R5D, R6A, R6B, R6C, R6D, R7A, R7B, R7C, R7D, R8A, R8B, R8C, R8D, R9A, R9B, R9C, R9D, R10A, R10B, R10C, R10D, R11A, R11B, R11C, R11D, R12A, R12B, R12C, R12D, R13A, R13B, R13C, R13D, R14A, R14B, R14C and R14D are independently hydrogen, halogen, —CF3, —CCl3, —CBr3, —CI3, —OH, —NH2, —COOH, —CONH2, —NO2, —SH, —SO3H, —SO4H, —SO2NH2, —NHNH2, —ONH2, —NHC(O)NHNH2, —NHC(O)NH2, —NHSO2H, —NHC(O)H, —NHC(O)—OH, —NHOH, —OCF3, —OCCl3, —OCBr3, —OCI3, —OCHF2, —OCHCl2, —OCHBr2, —OCHI2, substituted or unsubstituted alkyl, substituted or unsubstituted heteroalkyl, substituted or unsubstituted cycloalkyl, substituted or unsubstituted heterocycloalkyl, substituted or unsubstituted aryl, or substituted or unsubstituted heteroaryl; R1B, R1C, R2B, R2C, R3B, R3C, R4B, R4C, R5B, R5C, R6B, R6C, R7B, R7C, R8B, R8C, R9B, R9C, R10B, R10C, R11B, R11C, R12B, R12C, R13B, R13C, R14B and R14C substituents bonded to the same nitrogen atom may optionally be joined to form a substituted or unsubstituted heterocycloalkyl or substituted or unsubstituted heteroaryl; and X1,1, X2,1, X3,1, X4,1, X5,1, X6,1, X7,1, X8,1, X9,1, X10,1, X11,1, X12,1, X13,1 and X14,1 are independently —Cl, —Br, —I or —F.


Embodiment P21. A method of activating Cystic Fibrosis Transmembrane Conductance Regulator (CFTR), comprising contacting CFTR with a compound of structural Formula (I):




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or a pharmaceutically acceptable salt thereof, wherein: L1 is —O—, —S—, —NR15— (e.g —NH—), —C(O)NR15, substituted or unsubstituted alkylene or substituted or unsubstituted heteroalkylene; n1 is an integer from 0 to 4; m1 and v1 are independently 1 or 2; R1 is hydrogen, halogen, —CX1,13, —CHX1,12, —CH2X1,1, —CN, —SOn1R1A, —SOv1NR1BR1C, —NHNR1BR1C, —ONR1BR1C, —NHC(O)NHNR1BR1C, —NHC(O)NR1BR1C, —N(O)m1, —NR1BR1C, —C(O)R1D, —C(O)OR1D, —C(O)NR1BR1C, —OR1A, —NR1BSO2R1A, —NR1BC(O)R1D, —NR1BC(O)OR1D, —NR1BOR1D, —OCX1,13, —OCHX1,12, substituted or unsubstituted alkyl, substituted or unsubstituted heteroalkyl, substituted or unsubstituted cycloalkyl, substituted or unsubstituted heterocycloalkyl, substituted or unsubstituted aryl, or substituted or unsubstituted heteroaryl; R2 is hydrogen, halogen, —CX2,13, —CHX2,12, —CH2X2,1, —CN, —SOn1R2A, —SOv1NR2BR2C, —NHNR2BR2C, —ONR2BR2C, —NHC(O)NHNR2BR2C, —NHC(O)NR2BR2C, —N(O)m1, —NR2BR2C, —C(O)R2D, —C(O)OR2D, —C(O)NR2BR2C, —OR2A, —NR2BSO2R2A, —NR2BC(O)R2D, —NR2BC(O)OR2D, —NR2BOR2D, —OCX2,13, —OCHX2,12, substituted or unsubstituted alkyl, substituted or unsubstituted heteroalkyl, substituted or unsubstituted cycloalkyl, substituted or unsubstituted heterocycloalkyl, substituted or unsubstituted aryl, or substituted or unsubstituted heteroaryl; R3 is hydrogen, halogen, —CX3,13, —CHX3,12, —CH2X3,1, —CN, —SOn1R3A, —SOv1NR3BR3C, —NHNR3BR3C, —ONR3BR3C, —NHC(O)NHNR3BR3C, —NHC(O)NR3BR3C, —N(O)m1, —NR3BR3C, —C(O)R3D, —C(O)OR3D, —C(O)NR3BR3C, —OR3A, —NR3BSO2R3A, —NR3BC(O)R3D, —NR3BC(O)OR3D, —NR3BOR3D, —OCX3,13, —OCHX3,12, substituted or unsubstituted alkyl, substituted or unsubstituted heteroalkyl, substituted or unsubstituted cycloalkyl, substituted or unsubstituted heterocycloalkyl, substituted or unsubstituted aryl, or substituted or unsubstituted heteroaryl; R4 is hydrogen, halogen, —CX4,13, —CHX4,12, —CH2X4,1, —CN, —SOn1R4A, —SOv1NR4BR4C, —NHNR4BR4C, —ONR4BR4C, —NHC(O)NHNR4BR4C, —NHC(O)NR4BR4C, —N(O)m1, —NR4BR4C, —C(O)R4D, —C(O)OR4D, —C(O)NR4BR4C, —OR4A, —NR4BSO2R4A, —NR4BC(O)R4D, —NR4BC(O)OR4D, —NR4BOR4D, —OCX4,13, —OCHX4,12, substituted or unsubstituted alkyl, substituted or unsubstituted heteroalkyl, substituted or unsubstituted cycloalkyl, substituted or unsubstituted heterocycloalkyl, substituted or unsubstituted aryl, or substituted or unsubstituted heteroaryl; R5 is hydrogen, halogen, —CX5,13, —CHX5,12, —CH2X5,1, —CN, —SOn1R5A, —SOv1NR5BR5C, —NHNR5BR5C, —ONR5BR5C, —NHC(O)NHNR5BR5C, —NHC(O)NR5BR5C, —N(O)m1, —NR5BR5C, —C(O)R5D, —C(O)OR5D, —C(O)NR5BR5C, —OR5A, —NR5BSO2R5A, —NR5BC(O)R5D, —NR5BC(O)OR5D, —NR5BOR5D, —OCX5,13, —OCHX5,12, substituted or unsubstituted alkyl, substituted or unsubstituted heteroalkyl, substituted or unsubstituted cycloalkyl, substituted or unsubstituted heterocycloalkyl, substituted or unsubstituted aryl, or substituted or unsubstituted heteroaryl; R6 is hydrogen, halogen, —CX6,13, —CHX6,12, —CH2X6,1, —CN, —SOn1R6A, —SOv1NR6BR6C, —NHNR6BR6C, —ONR6BR6C, —NHC(O)NHNR6BR6C, —NHC(O)NR6BR6C, —N(O)m1, —NR6BR6C, —C(O)R6D, —C(O)OR6D, —C(O)NR6BR6C, —OR6A, —NR6BSO2R6A, —NR6BC(O)R6D, —NR6BC(O)OR6D, —NR6BOR6D, —OCX6,13, —OCHX6,12, substituted or unsubstituted alkyl, substituted or unsubstituted heteroalkyl, substituted or unsubstituted cycloalkyl, substituted or unsubstituted heterocycloalkyl, substituted or unsubstituted aryl, or substituted or unsubstituted heteroaryl; R7 is hydrogen, halogen, —CX7,13, —CHX7,12, —CH2X7,1, —CN, —SOn1R7A, —SOv1NR7BR7C, —NHNR7BR7C, —ONR7BR7C, —NHC(O)NHNR7BR7C, —NHC(O)NR7BR7C, —N(O)m1, —NR7BR7C, —C(O)R7D, —C(O)OR7D, —C(O)NR7BR7C, —OR7A, —NR7BSO2R7A, —NR7AC(O)R7C, —NR7BC(O)OR7D, —NR7BOR7D, —OCX7,13, —OCHX7,12, substituted or unsubstituted alkyl, substituted or unsubstituted heteroalkyl, substituted or unsubstituted cycloalkyl, substituted or unsubstituted heterocycloalkyl, substituted or unsubstituted aryl, or substituted or unsubstituted heteroaryl; R8 is hydrogen, halogen, —CX8,13, —CHX8,12, —CH2X8,1, —CN, —SOn1R8A, —SOv1NR8BR8C, —NHNR8BR8C, —ONR8BR8C, —NHC(O)NHNR8BR8C, —NHC(O)NR8BR8C, —N(O)m1, —NR8BR8C, —C(O)R8D, —C(O)OR8D, —C(O)NR8BR8C, —OR8A, —NR8BSO2R8A, —NR8BC(O)R8D, —NR8BC(O)OR8D, —NR8BOR8D, —OCX8,13, —OCHX8,12, substituted or unsubstituted alkyl, substituted or unsubstituted heteroalkyl, substituted or unsubstituted cycloalkyl, substituted or unsubstituted heterocycloalkyl, substituted or unsubstituted aryl, or substituted or unsubstituted heteroaryl; R9 is hydrogen, halogen, —CX9,13, —CHX9,12, —CH2X9,1, —CN, —SOn1R9A, —SOv1NR9BR9C, —NHNR9BR9C, —ONR9BR9C, —NHC(O)NHNR9BR9C, —NHC(O)NR9BR9C, —N(O)m1, —NR9BR9C, —C(O)R9D, —C(O)OR9D, —C(O)NR9BR9C, —OR9A, —NR9BSO2R9A, —NR9BC(O)R9D, —NR9BC(O)OR9D, —NR9BOR9D, —OCX9,13, —OCHX9,12, substituted or unsubstituted alkyl, substituted or unsubstituted heteroalkyl, substituted or unsubstituted cycloalkyl, substituted or unsubstituted heterocycloalkyl, substituted or unsubstituted aryl, or substituted or unsubstituted heteroaryl; R10 is hydrogen, halogen, —CX10,13, —CHX10,12, —CH2X10,1, —CN, —SOn1R10A, —SOv1NR10BR10C, —NHNR10BR10C, —ONR10BR10C, —NHC(O)NHNR10BR10C, —NHC(O)NR10BR10C, —N(O)m1, —NR10BR10C, —C(O)R10D, —C(O)OR10D, —C(O)NR10BR10C, —OR10A, —NR10BSO2R10A, —NR10BC(O)R10D, —NR10BC(O)OR10D, —NR10BOR10D, —OCX10,13, —OCHX10,12, substituted or unsubstituted alkyl, substituted or unsubstituted heteroalkyl, substituted or unsubstituted cycloalkyl, substituted or unsubstituted heterocycloalkyl, substituted or unsubstituted aryl, or substituted or unsubstituted heteroaryl; R11 is hydrogen, halogen, —CX11,13, —CHX11,12, —CH2X11,1, —CN, —SOn1R11A, —SOv1NR11BR11C, —NHNR11BR11C, —ONR11BR11C, —NHC(O)NHNR11BR11C, —NHC(O)NR11BR11C, —N(O)m1, —NR11BR11C, —C(O)R11D, —C(O)OR11D, —C(O)NR11BR11C, —OR11A, —NR11BSO2R11A, —NR11BC(O)R11D, —NR11BC(O)OR11D, —NR11BOR11D, —OCX11,13, —OCHX11,12, substituted or unsubstituted alkyl, substituted or unsubstituted heteroalkyl, substituted or unsubstituted cycloalkyl, substituted or unsubstituted heterocycloalkyl, substituted or unsubstituted aryl, or substituted or unsubstituted heteroaryl; R12 is hydrogen, halogen, —CX12,13, —CHX12,12, —CH2X12,1, —CN, —SOn1R12A, —SOv1NR12BR12C, —NHNR12BR12C, —ONR12BR12C, —NHC(O)NHNR12BR12C, —NHC(O)NR12BR12C, —N(O)m1, —NR12BR12C, —C(O)R12D, —C(O)OR12D, —C(O)NR12BR12C, —OR12A, —NR12BSO2R12A, —NR12BC(O)R12D, —NR12BC(O)OR12D, —NR12BOR12D, —OCX12,13, —OCHX12,12, substituted or unsubstituted alkyl, substituted or unsubstituted heteroalkyl, substituted or unsubstituted cycloalkyl, substituted or unsubstituted heterocycloalkyl, substituted or unsubstituted aryl, or substituted or unsubstituted heteroaryl; R13 is hydrogen, halogen, —CX13,13, —CHX13,12, —CH2X13,1, —CN, —SOn1R13A, —SOv1NR13BR13C, —NHNR13BR13C, —ONR13BR13C, —NHC(O)NHNR13BR13C, —NHC(O)NR13BR13C, —N(O)m1, —NR13BR13C, —C(O)R13D, —C(O)OR13D, —C(O)NR13BR13C, —OR13A, —NR13BSO2R13A, —NR13BC(O)R13D, —NR13BC(O)OR13D, —NR13BOR13D, —OCX13,13, —OCHX13,12, substituted or unsubstituted alkyl, substituted or unsubstituted heteroalkyl, substituted or unsubstituted cycloalkyl, substituted or unsubstituted heterocycloalkyl, substituted or unsubstituted aryl, or substituted or unsubstituted heteroaryl; R14 is hydrogen, halogen, —CX14,13, —CHX14,12, —CH2X14,1, —CN, —SOn1R14A, —SOv1NR14BR14C, —NHNR14BR14C, —ONR14BR14C, —NHC(O)NHNR14BR14C, —NHC(O)NR14BR14C, —N(O)m1, —NR14BR14C, —C(O)R14D, —C(O)OR14D, —C(O)NR14BR14C, —OR14A, —NR14BSO2R14A, —NR14BC(O)R14D, —NR14BC(O)OR14D, —NR14BOR14D, —OCX14,13, —OCHX14,12, substituted or unsubstituted alkyl, substituted or unsubstituted heteroalkyl, substituted or unsubstituted cycloalkyl, substituted or unsubstituted heterocycloalkyl, substituted or unsubstituted aryl, or substituted or unsubstituted heteroaryl; R15 is hydrogen, substituted or unsubstituted alkyl, substituted or unsubstituted heteroalkyl, substituted or unsubstituted cycloalkyl, substituted or unsubstituted heterocycloalkyl, substituted or unsubstituted aryl, or substituted or unsubstituted heteroaryl; R1A, R1B, R1C, R1D, R2A, R2B, R2C, R2D, R3A, R3B, R3C, R3D, R4A, R4B, R4C, R4D, R5A, R5B, R5C, R5D, R6A, R6B, R6C, R6D, R7A, R7B, R7C, R7D, R8A, R8B, R8C, R8D, R9A, R9B, R9C, R9D, R10A, R10B, R10C, R10D, R11A, R11B, R11C, R11D, R12A, R12B, R12C, R12D, R13A, R13B, R13C, R13D, R14A, R14B, R14C and R14D are independently hydrogen, halogen, —CF3, —CCl3, —CBr3, —CI3, —OH, —NH2, —COOH, —CONH2, —NO2, —SH, —SO3H, —SO4H, —SO2NH2, —NHNH2, —ONH2, —NHC(O)NHNH2, —NHC(O)NH2, —NHSO2H, —NHC(O)H, —NHC(O)—OH, —NHOH, —OCF3, —OCCl3, —OCBr3, —OCI3, —OCHF2, —OCHCl2, —OCHBr2, —OCHI2, substituted or unsubstituted alkyl, substituted or unsubstituted heteroalkyl, substituted or unsubstituted cycloalkyl, substituted or unsubstituted heterocycloalkyl, substituted or unsubstituted aryl, or substituted or unsubstituted heteroaryl; R1B, R1C, R2B, R2C, R3B, R3C, R4B, R4C, R5B, R5C, R6B, R6C, R7B, R7C, R8B, R8C, R9B, R9C, R10B, R10C, R11B, R11C, R12B, R12C, R13B, R13C, R14B and R14C bonded to the same nitrogen atom may optionally be joined to form a substituted or unsubstituted heterocycloalkyl or substituted or unsubstituted heteroaryl; and X1,1, X2,1, X3,1, X4,1, X5,1, X6,1, X7,1, X8,1, X9,1, X10,1, X11,1, X12,1, X13,1 and X14,1 are independently —Cl, —Br, —I or —F.


Further embodiments contemplated herein include embodiments Q1 to Q21 following.


Embodiment Q1. A pharmaceutical composition, comprising a pharmaceutically acceptable excipient, and a compound of Formula I:




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or a pharmaceutically acceptable salt thereof, wherein: L1 is —O—, —S—, —NR15— (e.g —NH—), —C(O)NR15, —C(O)—, substituted or unsubstituted alkylene or substituted or unsubstituted heteroalkylene; n1 is an integer from 0 to 4; m1 and v1 are independently 1 or 2; R1 is hydrogen, halogen, —CX1,13, —CHX1,12, —CH2X1,1, —CN, —SOn1R1A, —SOv1NR1BR1C, —NHNR1BR1C, —ONR1BR1C, —NHC(O)NHNR1BR1C, —NHC(O)NR1BR1C, —N(O)m1, —NR1BR1C, —C(O)R1D, —C(O)OR1D, —C(O)NR1BR1C, —OR1A, —NR1BSO2R1A, —NR1BC(O)R1D, —NR1BC(O)OR1D, —NR1BOR1D, —OCX1,13, —OCHX1,12, substituted or unsubstituted alkyl, substituted or unsubstituted heteroalkyl, substituted or unsubstituted cycloalkyl, substituted or unsubstituted heterocycloalkyl, substituted or unsubstituted aryl, or substituted or unsubstituted heteroaryl; R2 is hydrogen, halogen, —CX2,13, —CHX2,12, —CH2X2,1, —CN, —SOn1R2A, —SOv1NR2BR2C, —NHNR2BR2C, —ONR2BR2C, —NHC(O)NHNR2BR2C, —NHC(O)NR2BR2C, —N(O)m1, —NR2BR2C, —C(O)R2D, —C(O)OR2D, —C(O)NR2BR2C, —OR2A, —NR2BSO2R2A, —NR2BC(O)R2D, —NR2BC(O)OR2D, —NR2BOR2D, —OCX2,13, —OCHX2,12, substituted or unsubstituted alkyl, substituted or unsubstituted heteroalkyl, substituted or unsubstituted cycloalkyl, substituted or unsubstituted heterocycloalkyl, substituted or unsubstituted aryl, or substituted or unsubstituted heteroaryl; R3 is hydrogen, halogen, —CX3,13, —CHX3,12, —CH2X3,1, —CN, —SOn1R3A, —SOv1NR3BR3C, —NHNR3BR3C, —ONR3BR3C, —NHC(O)NHNR3BR3C, —NHC(O)NR3BR3C, —N(O)m1, —NR3BR3C, —C(O)R3D, —C(O)OR3D, —C(O)NR3BR3C, —OR3A, —NR3BSO2R3A, —NR3BC(O)R3D, —NR3BC(O)OR3D, —NR3BOR3D, —OCX3,13, —OCHX3,12, substituted or unsubstituted alkyl, substituted or unsubstituted heteroalkyl, substituted or unsubstituted cycloalkyl, substituted or unsubstituted heterocycloalkyl, substituted or unsubstituted aryl, or substituted or unsubstituted heteroaryl; R4 is hydrogen, halogen, —CX4,13, —CHX4,12, —CH2X4,1, —CN, —SOn1R4A, —SOv1NR4BR4C, —NHNR4BR4C, —ONR4BR4C, —NHC(O)NHNR4BR4C, —NHC(O)NR4BR4C, —N(O)m1, —NR4BR4C, —C(O)R4D, —C(O)OR4D, —C(O)NR4BR4C, —OR4A, —NR4BSO2R4A, —NR4BC(O)R4D, —NR4BC(O)OR4D, —NR4BOR4D, —OCX4,13, —OCHX4,12, substituted or unsubstituted alkyl, substituted or unsubstituted heteroalkyl, substituted or unsubstituted cycloalkyl, substituted or unsubstituted heterocycloalkyl, substituted or unsubstituted aryl, or substituted or unsubstituted heteroaryl; R5 is hydrogen, halogen, —CX5,13, —CHX5,12, —CH2X5,1, —CN, —SOn1R5A, —SOv1NR5BR5C, —NHNR5BR5C, —ONR5BR5C, —NHC(O)NHNR5BR5C, —NHC(O)NR5BR5C, —N(O)m1, —NR5BR5C, —C(O)R5D, —C(O)OR5D, —C(O)NR5BR5C, —OR5A, —NR5BSO2R5A, —NR5BC(O)R5D, —NR5BC(O)OR5D, —NR5BOR5D, —OCX5,13, —OCHX5,12, substituted or unsubstituted alkyl, substituted or unsubstituted heteroalkyl, substituted or unsubstituted cycloalkyl, substituted or unsubstituted heterocycloalkyl, substituted or unsubstituted aryl, or substituted or unsubstituted heteroaryl; R6 is hydrogen, halogen, —CX6,13, —CHX6,12, —CH2X6,1, —CN, —SOn1R6A, —SOv1NR6BR6C, —NHNR6BR6C, —ONR6BR6C, —NHC(O)NHNR6BR6C, —NHC(O)NR6BR6C, —N(O)m1, —NR6BR6C, —C(O)R6D, —C(O)OR6D, —C(O)NR6BR6C, —OR6A, —NR6BSO2R6A, —NR6BC(O)R6D, —NR6BC(O)OR6D, —NR6BOR6D, —OCX6,13, —OCHX6,12, substituted or unsubstituted alkyl, substituted or unsubstituted heteroalkyl, substituted or unsubstituted cycloalkyl, substituted or unsubstituted heterocycloalkyl, substituted or unsubstituted aryl, or substituted or unsubstituted heteroaryl; R7 is hydrogen, halogen, —CX7,13, —CHX7,12, —CH2X7,1, —CN, —SOn1R7A, —SOv1NR7BR7C, —NHNR7BR7C, —ONR7BR7C, —NHC(O)NHNR7BR7C, —NHC(O)NR7BR7C, —N(O)m1, —NR7BR7C, —C(O)R7D, —C(O)OR7D, —C(O)NR7BR7C, —OR7A, —NR7BSO2R7A, —NR7AC(O)R7C, —NR7BC(O)OR7D, —NR7BOR7D, —OCX7,13, —OCHX7,12, substituted or unsubstituted alkyl, substituted or unsubstituted heteroalkyl, substituted or unsubstituted cycloalkyl, substituted or unsubstituted heterocycloalkyl, substituted or unsubstituted aryl, or substituted or unsubstituted heteroaryl; R8 is hydrogen, halogen, —CX8,13, —CHX8,12, —CH2X8,1, —CN, —SOn1R8A, —SOv1NR8BR8C, —NHNR8BR8C, —ONR8BR8C, —NHC(O)NHNR8BR8C, —NHC(O)NR8BR8C, —N(O)m1, —NR8BR8C, —C(O)R8D, —C(O)OR8D, —C(O)NR8BR8C, —OR8A, —NR8BSO2R8A, —NR8BC(O)R8D, —NR8BC(O)OR8D, —NR8BOR8D, —OCX8,13, —OCHX8,12, substituted or unsubstituted alkyl, substituted or unsubstituted heteroalkyl, substituted or unsubstituted cycloalkyl, substituted or unsubstituted heterocycloalkyl, substituted or unsubstituted aryl, or substituted or unsubstituted heteroaryl; R9 is hydrogen, halogen, —CX9,13, —CHX9,12, —CH2X9,1, —CN, —SOn1R9A, —SOv1NR9BR9C, —NHNR9BR9C, —ONR9BR9C, —NHC(O)NHNR9BR9C, —NHC(O)NR9BR9C, —N(O)m1, —NR9BR9C, —C(O)R9D, —C(O)OR9D, —C(O)NR9BR9C, —OR9A, —NR9BSO2R9A, —NR9BC(O)R9D, —NR9BC(O)OR9D, —NR9BOR9D, —OCX9,13, —OCHX9,12, substituted or unsubstituted alkyl, substituted or unsubstituted heteroalkyl, substituted or unsubstituted cycloalkyl, substituted or unsubstituted heterocycloalkyl, substituted or unsubstituted aryl, or substituted or unsubstituted heteroaryl; R10 is hydrogen, halogen, —CX10,13, —CHX10,12, —CH2X10,1, —CN, —SOn1R10A, —SOv1NR10BR10C, —NHNR10BR10C, —ONR10BR10C, —NHC(O)NHNR10BR10C, —NHC(O)NR10BR10C, —N(O)m1, —NR10BR10C, —C(O)R10D, —C(O)OR10D, —C(O)NR10BR10C, —OR10A, —NR10BSO2R10A, —NR10BC(O)R10D, —NR10BC(O)OR10D, —NR10BOR10D, —OCX10,13, —OCHX10,12, substituted or unsubstituted alkyl, substituted or unsubstituted heteroalkyl, substituted or unsubstituted cycloalkyl, substituted or unsubstituted heterocycloalkyl, substituted or unsubstituted aryl, or substituted or unsubstituted heteroaryl; R11 is hydrogen, halogen, —CX11,13, —CHX11,12, —CH2X11,1, —CN, —SOn1R11A, —SOv1NR11BR11C, —NHNR11BR11C, —ONR11BR11C, —NHC(O)NHNR11BR11C, —NHC(O)NR11BR11C, —N(O)m1, —NR11BR11C, —C(O)R11D, —C(O)OR11D, —C(O)NR11BR11C, —OR11A, —NR11BSO2R11A, —NR11BC(O)R11D, —NR11BC(O)OR11D, —NR11BOR11D, —OCX11,13, —OCHX11,12, substituted or unsubstituted alkyl, substituted or unsubstituted heteroalkyl, substituted or unsubstituted cycloalkyl, substituted or unsubstituted heterocycloalkyl, substituted or unsubstituted aryl, or substituted or unsubstituted heteroaryl; R12 is hydrogen, halogen, —CX12,13, —CHX12,12, —CH2X12,1, —CN, —SOn1R12A, —SOv1NR12BR12C, —NHNR12BR12C, —ONR12BR12C, —NHC(O)NHNR12BR12C, —NHC(O)NR12BR12C, —N(O)m1, —NR12BR12C, —C(O)R12D, —C(O)OR12D, —C(O)NR12BR12C, —OR12A, —NR12BSO2R12A, —NR12BC(O)R12D, —NR12BC(O)OR12D, —NR12BOR12D, —OCX12,13, —OCHX12,12, substituted or unsubstituted alkyl, substituted or unsubstituted heteroalkyl, substituted or unsubstituted cycloalkyl, substituted or unsubstituted heterocycloalkyl, substituted or unsubstituted aryl, or substituted or unsubstituted heteroaryl; R13 is hydrogen, halogen, —CX13,13, —CHX13,12, —CH2X13,1, —CN, —SOn1R13A, —SOv1NR13BR13C, —NHNR13BR13C, —ONR13BR13C, —NHC(O)NHNR13BR13C, —NHC(O)NR13BR13C, —N(O)m1, —NR13BR13C, —C(O)R13D, —C(O)OR13D, —C(O)NR13BR13C, —OR13A, —NR13BSO2R13A, —NR13BC(O)R13D, —NR13BC(O)OR13D, —NR13BOR13D, —OCX13,13, —OCHX13,12, substituted or unsubstituted alkyl, substituted or unsubstituted heteroalkyl, substituted or unsubstituted cycloalkyl, substituted or unsubstituted heterocycloalkyl, substituted or unsubstituted aryl, or substituted or unsubstituted heteroaryl; R14 is hydrogen, halogen, —CX14,13, —CHX14,12, —CH2X14,1, —CN, —SOn1R14A, —SOv1NR14BR14C, —NHNR14BR14C, —ONR14BR14C, —NHC(O)NHNR14BR14C, —NHC(O)NR14BR14C, —N(O)m1, —NR14BR14C, —C(O)R14D, —C(O)OR14D, —C(O)NR14BR14C, —OR14A, —NR14BSO2R14A, —NR14BC(O)R14D, —NR14BC(O)OR14D, —NR14BOR14D, —OCX14,13, —OCHX14,12, substituted or unsubstituted alkyl, substituted or unsubstituted heteroalkyl, substituted or unsubstituted cycloalkyl, substituted or unsubstituted heterocycloalkyl, substituted or unsubstituted aryl, or substituted or unsubstituted heteroaryl; R15 is hydrogen, substituted or unsubstituted alkyl, substituted or unsubstituted heteroalkyl, substituted or unsubstituted cycloalkyl, substituted or unsubstituted heterocycloalkyl, substituted or unsubstituted aryl, or substituted or unsubstituted heteroaryl; R1A, R1B, R1C, R1D, R2A, R2B, R2C, R2D, R3A, R3B, R3C, R3D, R4A, R4B, R4C, R4D, R5A, R5B, R5C, R5D, R6A, R6B, R6C, R6D, R7A, R7B, R7C, R7D, R8A, R8B, R8C, R8D, R9A, R9B, R9C, R9D, R10A, R10B, R10C, R10D, R11A, R11B, R11C, R11D, R12A, R12B, R12C, R12D, R13A, R13B, R13C, R13D, R14A, R14B, R14C and R14D are independently hydrogen, halogen, —CF3, —CCl3, —CBr3, —CI3, —OH, —NH2, —COOH, —CONH2, —NO2, —SH, —SO3H, —SO4H, —SO2NH2, —NHNH2, —ONH2, —NHC(O)NHNH2, —NHC(O)NH2, —NHSO2H, —NHC(O)H, —NHC(O)—OH, —NHOH, —OCF3, —OCCl3, —OCBr3, —OCI3, —OCHF2, —OCHCl2, —OCHBr2, —OCHI2, substituted or unsubstituted alkyl, substituted or unsubstituted heteroalkyl, substituted or unsubstituted cycloalkyl, substituted or unsubstituted heterocycloalkyl, substituted or unsubstituted aryl, or substituted or unsubstituted heteroaryl; R1B, R1C, R2B, R2C, R3B, R3C, R4B, R4C, R5B, R5C, R6B, R6C, R7B, R7C, R8B, R8C, R9B, R9C, R10B, R10C, R11B, R11C, R12B, R12C, R13B, R13C, R14B and R14C substituents bonded to the same nitrogen atom may optionally be joined to form a substituted or unsubstituted heterocycloalkyl or substituted or unsubstituted heteroaryl; and X1,1, X2,1, X3,1, X4,1, X5,1, X6,1, X7,1, X8,1, X9,1, X10,1, X11,1, X12,1, X13,1 and X14,1 are independently —Cl, —Br, —I or —F.


Embodiment Q2. The pharmaceutical composition of embodiment Q1, wherein L1 is —CH2—.


Embodiment Q3. The pharmaceutical composition of embodiment Q1, wherein R6, R7, R8 and R9 are independently hydrogen.


Embodiment Q4. The pharmaceutical composition of embodiment Q1, wherein at least two of R1, R2, R3, R4, R5 are independently hydrogen.


Embodiment Q5. The pharmaceutical composition of embodiment Q4, wherein: R1 is hydrogen, halogen —NO2, —NR1BR1C, NR1BC(O)R1D or substituted or unsubstituted alkyl; R2 is hydrogen, halogen —NO2, —NR2BR2C, NR2BC(O)R2D or substituted or unsubstituted alkyl; R3 is hydrogen, halogen —NO2, —NR3BR3C, NR3BC(O)R3D or substituted or unsubstituted alkyl; R4 is hydrogen, halogen —NO2, —NR4BR4C, NR4BC(O)R4D or substituted or unsubstituted alkyl; R5 is hydrogen, halogen —NO2, —NR5BR5C, NR5BC(O)R5D or substituted or unsubstituted alkyl; and R15 is hydrogen or substituted or unsubstituted alkyl.


Embodiment Q6. The pharmaceutical composition of embodiment Q1, wherein R10, R11, R12, R13 and R14 are independently hydrogen.


Embodiment Q7. A pharmaceutical composition, comprising a pharmaceutically acceptable excipient, and a compound of Formula IA:




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or a pharmaceutically acceptable salt thereof, wherein: n1 is an integer from 0 to 4; m1 and v1 are independently 1 or 2; R1 is hydrogen, halogen, —CX1,13, —CHX1,12, —CH2X1,1, —CN, —SOn1R1A, —SOv1NR1BR1C, —NHNR1BR1C, —ONR1BR1C, —NHC(O)NHNR1BR1C, —NHC(O)NR1BR1C, —N(O)m1, —NR1BR1C, —C(O)R1D, —C(O)OR1D, —C(O)NR1BR1C, —OR1A, —NR1BSO2R1A, —NR1BC(O)R1D, —NR1BC(O)OR1D, —NR1BOR1D, —OCX1,13, —OCHX1,12, substituted or unsubstituted alkyl, substituted or unsubstituted heteroalkyl, substituted or unsubstituted cycloalkyl, substituted or unsubstituted heterocycloalkyl, substituted or unsubstituted aryl, or substituted or unsubstituted heteroaryl; R2 is hydrogen, halogen, —CX2,13, —CHX2,12, —CH2X2,1, —CN, —SOn1R2A, —SOv1NR2BR2C, —NHNR2BR2C, —ONR2BR2C, —NHC(O)NHNR2BR2C, —NHC(O)NR2BR2C, —N(O)m1, —NR2BR2C, —C(O)R2D, —C(O)OR2D, —C(O)NR2BR2C, —OR2A, —NR2BSO2R2A, —NR2BC(O)R2D, —NR2BC(O)OR2D, —NR2BOR2D, —OCX2,13, —OCHX2,12, substituted or unsubstituted alkyl, substituted or unsubstituted heteroalkyl, substituted or unsubstituted cycloalkyl, substituted or unsubstituted heterocycloalkyl, substituted or unsubstituted aryl, or substituted or unsubstituted heteroaryl; R3 is hydrogen, halogen, —CX3,1, —CHX3,12, —CH2X3,1, —CN, —SOn1R3A, —SOv1NR3BR3C, —NHNR3BR3C, —ONR3BR3C, —NHC(O)NHNR3BR3C, —NHC(O)NR3BR3C, —N(O)m1, —NR3BR3C, —C(O)R3D, —C(O)OR3D, —C(O)NR3BR3C, —OR3A, —NR3BSO2R3A, —NR3BC(O)R3D, —NR3BC(O)OR3D, —NR3BOR3D, —OCX3,13, —OCHX3,12, substituted or unsubstituted alkyl, substituted or unsubstituted heteroalkyl, substituted or unsubstituted cycloalkyl, substituted or unsubstituted heterocycloalkyl, substituted or unsubstituted aryl, or substituted or unsubstituted heteroaryl; R4 is hydrogen, halogen, —CX4,13, —CHX4,12, —CH2X4,1, —CN, —SOn1R4A, —SOv1NR4BR4C, —NHNR4BR4C, —ONR4BR4C, —NHC(O)NHNR4BR4C, —NHC(O)NR4BR4C, —N(O)m1, —NR4BR4C, —C(O)R4D, —C(O)OR4D, —C(O)NR4BR4C, —OR4A, —NR4BSO2R4A, —NR4BC(O)R4D, —NR4BC(O)OR4D, —NR4BOR4D, —OCX4,13, —OCHX4,12, substituted or unsubstituted alkyl, substituted or unsubstituted heteroalkyl, substituted or unsubstituted cycloalkyl, substituted or unsubstituted heterocycloalkyl, substituted or unsubstituted aryl, or substituted or unsubstituted heteroaryl; R5 is hydrogen, halogen, —CX5,13, —CHX5,12, —CH2X5,1, —CN, —SOn1R5A, —SOv1NR5BR5C, —NHNR5BR5C, —ONR5BR5C, —NHC(O)NHNR5BR5C, —NHC(O)NR5BR5C, —N(O)m1, —NR5BR5C, —C(O)R5D, —C(O)OR5D, —C(O)NR5BR5C, —OR5A, —NR5BSO2R5A, —NR5BC(O)R5D, —NR5BC(O)OR5D, —NR5BOR5D, —OCX5,13, —OCHX5,12, substituted or unsubstituted alkyl, substituted or unsubstituted heteroalkyl, substituted or unsubstituted cycloalkyl, substituted or unsubstituted heterocycloalkyl, substituted or unsubstituted aryl, or substituted or unsubstituted heteroaryl; R6 is hydrogen, halogen, —CX6,13, —CHX6,12, —CH2X6,1, —CN, —SOn1R6A, —SOv1NR6BR6C, —NHNR6BR6C, —ONR6BR6C, —NHC(O)NHNR6BR6C, —NHC(O)NR6BR6C, —N(O)m1, —NR6BR6C, —C(O)R6D, —C(O)OR6D, —C(O)NR6BR6C, —OR6A, —NR6BSO2R6A, —NR6BC(O)R6D, —NR6BC(O)OR6D, —NR6BOR6D, —OCX6,13, —OCHX6,12, substituted or unsubstituted alkyl, substituted or unsubstituted heteroalkyl, substituted or unsubstituted cycloalkyl, substituted or unsubstituted heterocycloalkyl, substituted or unsubstituted aryl, or substituted or unsubstituted heteroaryl; R7 is hydrogen, halogen, —CX7,13, —CHX7,12, —CH2X7,1, —CN, —SOn1R7A, —SOv1NR7BR7C, —NHNR7BR7C, —ONR7BR7C, —NHC(O)NHNR7BR7C, —NHC(O)NR7BR7C, —N(O)m1, —NR7BR7C, —C(O)R7D, —C(O)OR7D, —C(O)NR7BR7C, —OR7A, —NR7BSO2R7A, —NR7AC(O)R7C, —NR7BC(O)OR7D, —NR7BOR7D, —OCX7,13, —OCHX7,12, substituted or unsubstituted alkyl, substituted or unsubstituted heteroalkyl, substituted or unsubstituted cycloalkyl, substituted or unsubstituted heterocycloalkyl, substituted or unsubstituted aryl, or substituted or unsubstituted heteroaryl; R8 is hydrogen, halogen, —CX8,13, —CHX8,12, —CH2X8,1, —CN, —SOn1R8A, —SOv1NR8BR8C, —NHNR8BR8C, —ONR8BR8C, —NHC(O)NHNR8BR8C, —NHC(O)NR8BR8C, —N(O)m1, —NR8BR8C, —C(O)R8D, —C(O)OR8D, —C(O)NR8BR8C, —OR8A, —NR8BSO2R8A, —NR8BC(O)R8D, —NR8BC(O)OR8D, —NR8BOR8D, —OCX8,13, —OCHX8,12, substituted or unsubstituted alkyl, substituted or unsubstituted heteroalkyl, substituted or unsubstituted cycloalkyl, substituted or unsubstituted heterocycloalkyl, substituted or unsubstituted aryl, or substituted or unsubstituted heteroaryl; R9 is hydrogen, halogen, —CX9,13, —CHX9,12, —CH2X9,1, —CN, —SOn1R9A, —SOv1NR9BR9C, —NHNR9BR9C, —ONR9BR9C, —NHC(O)NHNR9BR9C, —NHC(O)NR9BR9C, —N(O)m1, —NR9BR9C, —C(O)R9D, —C(O)OR9D, —C(O)NR9BR9C, —OR9A, —NR9BSO2R9A, —NR9BC(O)R9D, —NR9BC(O)OR9D, —NR9BOR9D, —OCX9,13, —OCHX9,12, substituted or unsubstituted alkyl, substituted or unsubstituted heteroalkyl, substituted or unsubstituted cycloalkyl, substituted or unsubstituted heterocycloalkyl, substituted or unsubstituted aryl, or substituted or unsubstituted heteroaryl; R10 is hydrogen, halogen, —CX10,13, —CHX10,12, —CH2X10,1, —CN, —SOn1R10A, —SOv1NR10BR10C, —NHNR10BR10C, —ONR10BR10C, —NHC(O)NHNR10BR10C, —NHC(O)NR10BR10C, —N(O)m1, —NR10BR10C, —C(O)R10D, —C(O)OR10D, —C(O)NR10BR10C, —OR10A, —NR10BSO2R10A, —NR10BC(O)R10D, —NR10BC(O)OR10D, —NR10BOR10D, —OCX10,13, —OCHX10,12, substituted or unsubstituted alkyl, substituted or unsubstituted heteroalkyl, substituted or unsubstituted cycloalkyl, substituted or unsubstituted heterocycloalkyl, substituted or un substituted aryl, or substituted or unsubstituted heteroaryl; R11 is hydrogen, halogen, —CX11,13, —CHX11,12, —CH2X11,1, —CN, —SOn1R11A, —SOv1NR11BR11C, —NHNR11BR11C, —ONR11BR11C, —NHC(O)NHNR11BR11C, —NHC(O)NR11BR11C, —N(O)m1, —NR11BR11C, —C(O)R11D, —C(O)OR11D, —C(O)NR11BR11C, —OR11A, —NR11BSO2R11A, —NR11BC(O)R11D, —NR11BC(O)OR11D, —NR11BOR11D, —OCX11,13, —OCHX11,12, substituted or unsubstituted alkyl, substituted or unsubstituted heteroalkyl, substituted or unsubstituted cycloalkyl, substituted or unsubstituted heterocycloalkyl, substituted or unsubstituted aryl, or substituted or unsubstituted heteroaryl; R12 is hydrogen, halogen, —CX12,13, —CHX12,12, —CH2X12,1, —CN, —SOn1R12A, —SOv1NR12BR12C, —NHNR12BR12C, —ONR12BR12C, —NHC(O)NHNR12BR12C, —NHC(O)NR12BR12C, —N(O)m1, —NR12BR12C, —C(O)R12D, —C(O)OR12D, —C(O)NR12BR12C, —OR12A, —NR12BSO2R12A, —NR12BC(O)R12D, —NR12BC(O)OR12D, —NR12BOR12D, —OCX12,13, —OCHX12,12, substituted or unsubstituted alkyl, substituted or unsubstituted heteroalkyl, substituted or unsubstituted cycloalkyl, substituted or unsubstituted heterocycloalkyl, substituted or unsubstituted aryl, or substituted or unsubstituted heteroaryl; R13 is hydrogen, halogen, —CX13,13, —CHX13,12, —CH2X13,1, —CN, —SOn1R13A, —SOv1NR13BR13C, —NHNR13BR13C, —ONR13BR13C, —NHC(O)NHNR13BR13C, —NHC(O)NR13BR13C, —N(O)m1, —NR13BR13C, —C(O)R13D, —C(O)OR13D, —C(O)NR13BR13C, —OR13A, —NR13BSO2R13A, —NR13BC(O)R13D, —NR13BC(O)OR13D, —NR13BOR13D, —OCX13,13, —OCHX13,12, substituted or unsubstituted alkyl, substituted or unsubstituted heteroalkyl, substituted or unsubstituted cycloalkyl, substituted or unsubstituted heterocycloalkyl, substituted or unsubstituted aryl, or substituted or unsubstituted heteroaryl; R14 is hydrogen, halogen, —CX14,13, —CHX14,12, —CH2X14,1, —CN, —SOn1R14A, —SOv1NR14BR14C, —NHNR14BR14C, —ONR14BR14C, —NHC(O)NHNR14BR14C, —NHC(O)NR14BR14C, —N(O)m1, —NR14BR14C, —C(O)R14D, —C(O)OR14D, —C(O)NR14BR14C, —OR14A, —NR14BSO2R14A, —NR14BC(O)R14D, —NR14BC(O)OR14D, —NR14BOR14D, —OCX14,13, —OCHX14,12, substituted or unsubstituted alkyl, substituted or unsubstituted heteroalkyl, substituted or unsubstituted cycloalkyl, substituted or unsubstituted heterocycloalkyl, substituted or unsubstituted aryl, or substituted or unsubstituted heteroaryl; R15 is hydrogen, substituted or unsubstituted alkyl, substituted or unsubstituted heteroalkyl, substituted or unsubstituted cycloalkyl, substituted or unsubstituted heterocycloalkyl, substituted or unsubstituted aryl, or substituted or unsubstituted heteroaryl; R1A, R1B, R1C, R1D, R2A, R2B, R2C, R2D, R3A, R3B, R3C, R3D, R4A, R4B, R4C, R4D, R5A, R5B, R5C, R5D, R6A, R6B, R6C, R6D, R7A, R7B, R7C, R7D, R8A, R8B, R8C, R8D, R9A, R9B, R9C, R9D, R10A, R10B, R10C, R10D, R11A, R11B, R11C, R11D, R12A, R12B, R12C, R12D, R13A, R13B, R13C, R13D, R14A, R14B, R14C and R14D are independently hydrogen, halogen, —CF3, —CCl3, —CBr3, —CI3, —OH, —NH2, —COOH, —CONH2, —NO2, —SH, —SO3H, —SO4H, —SO2NH2, —NHNH2, —ONH2, —NHC(O)NHNH2, —NHC(O)NH2, —NHSO2H, —NHC(O)H, —NHC(O)—OH, —NHOH, —OCF3, —OCCl3, —OCBr3, —OCI3, —OCHF2, —OCHCl2, —OCHBr2, —OCHI2, substituted or unsubstituted alkyl, substituted or unsubstituted heteroalkyl, substituted or unsubstituted cycloalkyl, substituted or unsubstituted heterocycloalkyl, substituted or unsubstituted aryl, or substituted or unsubstituted heteroaryl; R1B, R1C, R2B, R2C, R3B, R3C, R4B, R4C, R5B, R5C, R6B, R6C, R7B, R7C, R8B, R8C, R9B, R9C, R10B, R10C, R11B, R11C, R12B, R12C, R13B, R13C, R14B and R14C substituents bonded to the same nitrogen atom may optionally be joined to form a substituted or unsubstituted heterocycloalkyl or substituted or unsubstituted heteroaryl; and X1,1, X2,1, X3,1, X4,1, X5,1, X6,1, X7,1, X8,1, X9,1, X10,1, X11,1, X12,1, X13,1 and X14,1 are independently —Cl, —Br, —I or —F.


Embodiment Q8. The pharmaceutical composition of embodiment Q7, wherein R6, R7, R8 and R9 are independently hydrogen.


Embodiment Q9. The pharmaceutical composition of embodiment Q1, wherein at least two of R1, R2, R3, R4, R5 are independently hydrogen.


Embodiment Q10. The pharmaceutical composition of embodiment Q9, wherein: R1 is hydrogen, halogen —NO2, —NR1BR1C, NR1BC(O)R1D or substituted or unsubstituted alkyl; R2 is hydrogen, halogen —NO2, —NR2BR2C, NR2BC(O)R2D or substituted or unsubstituted alkyl; R3 is hydrogen, halogen —NO2, —NR3BR3C, NR3BC(O)R3D or substituted or unsubstituted alkyl; R4 is hydrogen, halogen —NO2, —NR4BR4C, NR4BC(O)R4D or substituted or unsubstituted alkyl; R5 is hydrogen, halogen —NO2, —NR5BR5C, NR5BC(O)R5D or substituted or unsubstituted alkyl; and R15 is hydrogen or substituted or unsubstituted alkyl.


Embodiment Q11. The pharmaceutical composition of embodiment Q10, wherein R10, R11, R12, R13 and R14 are independently hydrogen.


Embodiment Q12. The composition of embodiment Q11, wherein: R1, R2 and R4 are independently hydrogen; R3 is —NO2; and R5 is H or —NH2.


Embodiment Q13. A method of treating constipation, comprising administering to a subject in need thereof a therapeutically effective amount of a compound of structural Formula (I):




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or a pharmaceutically acceptable salt thereof, wherein: L1 is —O—, —S—, NH, —C(O)NR15, —C(O)—, substituted or unsubstituted alkylene or substituted or unsubstituted heteroalkylene; n1 is an integer from 0 to 4; m1 and v1 are independently 1 or 2; R1 is hydrogen, halogen, —CX1,13, —CHX1,12, —CH2X1,1, —CN, —SOn1R1A, —SOv1NR1BR1C, —NHNR1BR1C, —ONR1BR1C, —NHC(O)NHNR1BR1C, —NHC(O)NR1BR1C, —N(O)m1, —NR1BR1C, —C(O)R1D, —C(O)OR1D, —C(O)NR1BR1C, —OR1A, —NR1BSO2R1A, —NR1BC(O)R1D, —NR1BC(O)OR1D, —NR1BOR1D, —OCX1,13, —OCHX1,12, substituted or unsubstituted alkyl, substituted or unsubstituted heteroalkyl, substituted or unsubstituted cycloalkyl, substituted or unsubstituted heterocycloalkyl, substituted or unsubstituted aryl, or substituted or unsubstituted heteroaryl; R2 is hydrogen, halogen, —CX2,13, —CHX2,12, —CH2X2,1, —CN, —SOn1R2A, —SOv1NR2BR2C, —NHNR2BR2C, —ONR2BR2C, —NHC(O)NHNR2BR2C, —NHC(O)NR2BR2C, —N(O)m1, —NR2BR2C, —C(O)R2D, —C(O)OR2D, —C(O)NR2BR2C, —OR2A, —NR2BSO2R2A, —NR2BC(O)R2D, —NR2BC(O)OR2D, —NR2BOR2D, —OCX2,13, —OCHX2,12, substituted or unsubstituted alkyl, substituted or unsubstituted heteroalkyl, substituted or unsubstituted cycloalkyl, substituted or unsubstituted heterocycloalkyl, substituted or unsubstituted aryl, or substituted or unsubstituted heteroaryl; R3 is hydrogen, halogen, —CX3,13, —CHX3,12, —CH2X3,1, —CN, —SOn1R3A, —SOv1NR3BR3C, —NHNR3BR3C, —ONR3BR3C, —NHC(O)NHNR3BR3C, —NHC(O)NR3BR3C, —N(O)m1, —NR3BR3C, —C(O)R3D, —C(O)OR3D, —C(O)NR3BR3C, —OR3A, —NR3BSO2R3A, —NR3BC(O)R3D, —NR3BC(O)OR3D, —NR3BOR3D, —OCX3,13, —OCHX3,12, substituted or unsubstituted alkyl, substituted or unsubstituted heteroalkyl, substituted or unsubstituted cycloalkyl, substituted or unsubstituted heterocycloalkyl, substituted or unsubstituted aryl, or substituted or unsubstituted heteroaryl; R4 is hydrogen, halogen, —CX4,13, —CHX4,12, —CH2X4,1, —CN, —SOn1R4A, —SOv1NR4BR4C, —NHNR4BR4C, —ONR4BR4C, —NHC(O)NHNR4BR4C, —NHC(O)NR4BR4C, —N(O)m1, —NR4BR4C, —C(O)R4D, —C(O)OR4D, —C(O)NR4BR4C, —OR4A, —NR4BSO2R4A, —NR4BC(O)R4D, —NR4BC(O)OR4D, —NR4BOR4D, —OCX4,12, —OCHX4,12, substituted or unsubstituted alkyl, substituted or unsubstituted heteroalkyl, substituted or unsubstituted cycloalkyl, substituted or unsubstituted heterocycloalkyl, substituted or unsubstituted aryl, or substituted or unsubstituted heteroaryl; R5 is hydrogen, halogen, —CX5,13, —CHX5,12, —CH2X5,1, —CN, —SOn1R5A, —SOv1NR5BR5C, —NHNR5BR5C, —ONR5BR5C, —NHC(O)NHNR5BR5C, —NHC(O)NR5BR5C, —N(O)m1, —NR5BR5C, —C(O)R5D, —C(O)OR5D, —C(O)NR5BR5C, —OR5A, —NR5BSO2R5A, —NR5BC(O)R5D, —NR5BC(O)OR5D, —NR5BOR5D, —OCX5,13, —OCHX5,12, substituted or unsubstituted alkyl, substituted or unsubstituted heteroalkyl, substituted or unsubstituted cycloalkyl, substituted or unsubstituted heterocycloalkyl, substituted or unsubstituted aryl, or substituted or unsubstituted heteroaryl; R6 is hydrogen, halogen, —CX6,13, —CHX6,12, —CH2X6,1, —CN, —SOn1R6A, —SOv1NR6BR6C, —NHNR6BR6C, —ONR6BR6C, —NHC(O)NHNR6BR6C, —NHC(O)NR6BR6C, —N(O)m1, —NR6BR6C, —C(O)R6D, —C(O)OR6D, —C(O)NR6BR6C, —OR6A, —NR6BSO2R6A, —NR6BC(O)R6D, —NR6BC(O)OR6D, —NR6BOR6D, —OCX6,1 2, —OCHX6,12, substituted or unsubstituted alkyl, substituted or unsubstituted heteroalkyl, substituted or unsubstituted cycloalkyl, substituted or unsubstituted heterocycloalkyl, substituted or unsubstituted aryl, or substituted or unsubstituted heteroaryl; R7 is hydrogen, halogen, —CX7,13, —CHX7,12, —CH2X7,1, —CN, —SOn1R7A, —SOv1NR7BR7C, —NHNR7BR7C, —ONR7BR7C, —NHC(O)NHNR7BR7C, —NHC(O)NR7BR7C, —N(O)m1, —NR7BR7C, —C(O)R7D, —C(O)OR7D, —C(O)NR7BR7C, —OR7A, —NR7BSO2R7A, —NR7AC(O)R7C, —NR7BC(O)OR7D, —NR7BOR7D, —OCX7,13, —OCHX7,12, substituted or unsubstituted alkyl, substituted or unsubstituted heteroalkyl, substituted or unsubstituted cycloalkyl, substituted or unsubstituted heterocycloalkyl, substituted or unsubstituted aryl, or substituted or unsubstituted heteroaryl; R8 is hydrogen, halogen, —CX8,13, —CHX8,12, —CH2X8,1, —CN, —SOn1R8A, —SOv1NR8BR8C, —NHNR8BR8C, —ONR8BR8C, —NHC(O)NHNR8BR8C, —NHC(O)NR8BR8C, —N(O)m1, —NR8BR8C, —C(O)R8D, —C(O)OR8D, —C(O)NR8BR8C, —OR8A, —NR8BSO2R8A, —NR8BC(O)R8D, —NR8BC(O)OR8D, —NR8BOR8D, —OCX8,13, —OCHX8,12, substituted or unsubstituted alkyl, substituted or unsubstituted heteroalkyl, substituted or unsubstituted cycloalkyl, substituted or unsubstituted heterocycloalkyl, substituted or unsubstituted aryl, or substituted or unsubstituted heteroaryl; R9 is hydrogen, halogen, —CX9,13, —CHX9,12, —CH2X9,1, —CN, —SOn1R9A, —SOv1NR9BR9C, —NHNR9BR9C, —ONR9BR9C, —NHC(O)NHNR9BR9C, —NHC(O)NR9BR9C, —N(O)m1, —NR9BR9C, —C(O)R9D, —C(O)OR9D, —C(O)NR9BR9C, —OR9A, —NR9BSO2R9A, —NR9BC(O)R9D, —NR9BC(O)OR9D, —NR9BOR9D, —OCX9,13, —OCHX9,12, substituted or unsubstituted alkyl, substituted or unsubstituted heteroalkyl, substituted or unsubstituted cycloalkyl, substituted or unsubstituted heterocycloalkyl, substituted or unsubstituted aryl, or substituted or unsubstituted heteroaryl; R10 is hydrogen, halogen, —CX10,13, —CHX10,12, —CH2X10,1, —CN, —SOn1R10A, —SOv1NR10BR10C, —NHNR10BR10C, —ONR10BR10C, —NHC(O)NHNR10BR10C, —NHC(O)NR10BR10C, —N(O)m1, —NR10BR10C, —C(O)R10D, —C(O)OR10D, —C(O)NR10BR10C, —OR10A, —NR10BSO2R10A, —NR10BC(O)R10D, —NR10BC(O)OR10D, —NR10BOR10D, —OCX10,13, —OCHX10,12, substituted or unsubstituted alkyl, substituted or unsubstituted heteroalkyl, substituted or unsubstituted cycloalkyl, substituted or unsubstituted heterocycloalkyl, substituted or un substituted aryl, or substituted or unsubstituted heteroaryl; R11 is hydrogen, halogen, —CX11,13, —CHX11,12, —CH2X11,1, —CN, —SOn1R11A, —SOv1NR11BR11C, —NHNR11BR11C, —ONR11BR11C, —NHC(O)NHNR11BR11C, —NHC(O)NR11BR11C, —N(O)m1, —NR11BR11C, —C(O)R11D, —C(O)OR11D, —C(O)NR11BR11C, —OR11A, —NR11BSO2R11A, —NR11BC(O)R11D, —NR11BC(O)OR11D, —NR11BOR11D, —OCX11,13, —OCHX11,12, substituted or unsubstituted alkyl, substituted or unsubstituted heteroalkyl, substituted or unsubstituted cycloalkyl, substituted or unsubstituted heterocycloalkyl, substituted or unsubstituted aryl, or substituted or unsubstituted heteroaryl; R12 is hydrogen, halogen, —CX12,13, —CHX12,12, —CH2X12,1, —CN, —SOn1R12A, —SOv1NR12BR12C, —NHNR12BR12C, —ONR12BR12C, —NHC(O)NHNR12BR12C, —NHC(O)NR12BR12C, —N(O)m1, —NR12BR12C, —C(O)R12D, —C(O)OR12D, —C(O)NR12BR12C, —OR12A, —NR12BSO2R12A, —NR12BC(O)R12D, —NR12BC(O)OR12D, —NR12BOR12D, —OCX12,13, —OCHX12,12, substituted or unsubstituted alkyl, substituted or unsubstituted heteroalkyl, substituted or unsubstituted cycloalkyl, substituted or unsubstituted heterocycloalkyl, substituted or unsubstituted aryl, or substituted or unsubstituted heteroaryl; R13 is hydrogen, halogen, —CX13,13, —CHX13,12, —CH2X13,1, —CN, —SOn1R13A, —SOv1NR13BR13C, —NHNR13BR13C, —ONR13BR13C, —NHC(O)NHNR13BR13C, —NHC(O)NR13BR13C, —N(O)m1, —NR13BR13C, —C(O)R13D, —C(O)OR13D, —C(O)NR13BR13C, —OR13A, —NR13BSO2R13A, —NR13BC(O)R13D, —NR13BC(O)OR13D, —NR13BOR13D, —OCX13,13, —OCHX13,12, substituted or unsubstituted alkyl, substituted or unsubstituted heteroalkyl, substituted or unsubstituted cycloalkyl, substituted or unsubstituted heterocycloalkyl, substituted or unsubstituted aryl, or substituted or unsubstituted heteroaryl; R14 is hydrogen, halogen, —CX14,13, —CHX14,12, —CH2X14,1, —CN, —SOn1R14A, —SOv1NR14BR14C, —NHNR14BR14C, —ONR14BR14C, —NHC(O)NHNR14BR14C, —NHC(O)NR14BR14C, —N(O)m1, —NR14BR14C, —C(O)R14D, —C(O)OR14D, —C(O)NR14BR14C, —OR14A, —NR14BSO2R14A, —NR14BC(O)R14D, —NR14BC(O)OR14D, —NR14BOR14D, —OCX14,13, —OCHX14,12, substituted or unsubstituted alkyl, substituted or unsubstituted heteroalkyl, substituted or unsubstituted cycloalkyl, substituted or unsubstituted heterocycloalkyl, substituted or unsubstituted aryl, or substituted or unsubstituted heteroaryl; R15 is hydrogen, substituted or unsubstituted alkyl, substituted or unsubstituted heteroalkyl, substituted or unsubstituted cycloalkyl, substituted or unsubstituted heterocycloalkyl, substituted or unsubstituted aryl, or substituted or unsubstituted heteroaryl; R1A, R1B, R1C, R1D, R2A, R2B, R2C, R2D, R3A, R3B, R3C, R3D, R4A, R4B, R4C, R4D, R5A, R5B, R5C, R5D, R6A, R6B, R6C, R6D, R7A, R7B, R7C, R7D, R8A, R8B, R8C, R8D, R9A, R9B, R9C, R9D, R10A, R10B, R10C, R10D, R11A, R11B, R11C, R11D, R12A, R12B, R12C, R12D, R13A, R13B, R13C, R13D, R14A, R14B, R14C and R14D are independently hydrogen, halogen, —CF3, —CCl3, —CBr3, —CI3, —OH, —NH2, —COOH, —CONH2, —NO2, —SH, —SO3H, —SO4H, —SO2NH2, —NHNH2, —ONH2, —NHC(O)NHNH2, —NHC(O)NH2, —NHSO2H, —NHC(O)H, —NHC(O)—OH, —NHOH, —OCF3, —OCCl3, —OCBr3, —OCI3, —OCHF2, —OCHCl2, —OCHBr2, —OCHI2, substituted or unsubstituted alkyl, substituted or unsubstituted heteroalkyl, substituted or unsubstituted cycloalkyl, substituted or unsubstituted heterocycloalkyl, substituted or unsubstituted aryl, or substituted or unsubstituted heteroaryl; R1B, R1C, R2B, R2C, R3B, R3C, R4B, R4C, R5B, R5C, R6B, R6C, R7B, R7C, R8B, R8C, R9B, R9C, R10B, R10C, R11B, R11C, R12B, R12C, R13B, R13C, R14B and R14C substituents bonded to the same nitrogen atom may optionally be joined to form a substituted or unsubstituted heterocycloalkyl or substituted or unsubstituted heteroaryl; and X1,1, X2,1, X3,1, X4,1, X5,1, X6,1, X7,1, X8,1, X9,1, X10,1, X11,1, X12,1, X13,1 and X14,1 are independently —Cl, —Br, —I or —F.


Embodiment Q14. The method of embodiment Q13, further comprising administering to the subject an anti-constipation agent.


Embodiment Q15. The method of embodiment Q13, wherein the compound is administered orally.


Embodiment Q16. The method of embodiment Q13, wherein the constipation is opioid-induced constipation, chronic idiopathic constipation or irritable bowel syndrome with constipation predominance.


Embodiment Q17. A method of treating a dry eye disorder, comprising administering to a subject in need thereof a therapeutically effective amount a compound of structural Formula (I):




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or a pharmaceutically acceptable salt thereof, wherein: L1 is —O—, —S—, —NR15— (e.g —NH—), —C(O)NR15, —C(O)—, substituted or unsubstituted alkylene or substituted or unsubstituted heteroalkylene; n1 is an integer from 0 to 4; m1 and v1 are independently 1 or 2; R1 is hydrogen, halogen, —CX1,13, —CHX1,12, —CH2X1,1, —CN, —SOn1R1A, —SOv1NR1BR1C, —NHNR1BR1C, —ONR1BR1C, —NHC(O)NHNR1BR1C, —NHC(O)NR1BR1C, —N(O)m1, —NR1BR1C, —C(O)R1D, —C(O)OR1D, —C(O)NR1BR1C, —OR1A, —NR1BSO2R1A, —NR1BC(O)R1D, —NR1BC(O)OR1D, —NR1BOR1D, —OCX1,13, —OCHX1,12, substituted or unsubstituted alkyl, substituted or unsubstituted heteroalkyl, substituted or unsubstituted cycloalkyl, substituted or unsubstituted heterocycloalkyl, substituted or unsubstituted aryl, or substituted or unsubstituted heteroaryl; R2 is hydrogen, halogen, —CX2,13, —CHX2,12, —CH2X2,1, —CN, —SOn1R2A, —SOv1NR2BR2C, —NHNR2BR2C, —ONR2BR2C, —NHC(O)NHNR2BR2C, —NHC(O)NR2BR2C, —N(O)m1, —NR2BR2C, —C(O)R2D, —C(O)OR2D, —C(O)NR2BR2C, —OR2A, —NR2BSO2R2A, —NR2BC(O)R2D, —NR2BC(O)OR2U, —NR2BOR2D, —OCX2,13, —OCHX2,12, substituted or unsubstituted alkyl, substituted or unsubstituted heteroalkyl, substituted or unsubstituted cycloalkyl, substituted or unsubstituted heterocycloalkyl, substituted or unsubstituted aryl, or substituted or unsubstituted heteroaryl; R3 is hydrogen, halogen, —CX3,13, —CHX3,12, —CH2X3,1, —CN, —SOn1R3A, —SOv1NR3BR3C, —NHNR3BR3C, —ONR3BR3C, —NHC(O)NHNR3BR3C, —NHC(O)NR3BR3C, —N(O)m1, —NR3BR3C, —C(O)R3D, —C(O)OR3D, —C(O)NR3BR3C, —OR3A, —NR3BSO2R3A, —NR3BC(O)R3D, —NR3BC(O)OR3D, —NR3BOR3D, —OCX3,13, —OCHX3,12, substituted or unsubstituted alkyl, substituted or unsubstituted heteroalkyl, substituted or unsubstituted cycloalkyl, substituted or unsubstituted heterocycloalkyl, substituted or unsubstituted aryl, or substituted or unsubstituted heteroaryl; R4 is hydrogen, halogen, —CX4,13, —CHX4,12, —CH2X4,1, —CN, —SOn1R4A, —SOv1NR4BR4C, —NHNR4BR4C, —ONR4BR4C, —NHC(O)NHNR4BR4C, —NHC(O)NR4BR4C, —N(O)m1, —NR4BR4C, —C(O)R4D, —C(O)OR4D, —C(O)NR4BR4C, —OR4A, —NR4BSO2R4A, —NR4BC(O)R4D, —NR4BC(O)OR4D, —NR4BOR4D, —OCX4,13, —OCHX4,12, substituted or unsubstituted alkyl, substituted or unsubstituted heteroalkyl, substituted or unsubstituted cycloalkyl, substituted or unsubstituted heterocycloalkyl, substituted or unsubstituted aryl, or substituted or unsubstituted heteroaryl; R5 is hydrogen, halogen, —CX5,13, —CHX5,12, —CH2X5,1, —CN, —SOn1R5A, —SOv1NR5BR5C, —NHNR5BR5C, —ONR5BR5C, —NHC(O)NHNR5BR5C, —NHC(O)NR5BR5C, —N(O)m1, —NR5BR5C, —C(O)R5D, —C(O)OR5D, —C(O)NR5BR5C, —OR5A, —NR5BSO2R5A, —NR5BC(O)R5D, —NR5BC(O)OR5D, —NR5BOR5D, —OCX5,13, —OCHX5,12, substituted or unsubstituted alkyl, substituted or unsubstituted heteroalkyl, substituted or unsubstituted cycloalkyl, substituted or unsubstituted heterocycloalkyl, substituted or unsubstituted aryl, or substituted or unsubstituted heteroaryl; R6 is hydrogen, halogen, —CX6,13, —CHX6,12, —CH2X6,1, —CN, —SOn1R6A, —SOv1NR6BR6C, —NHNR6BR6C, —ONR6BR6C, —NHC(O)NHNR6BR6C, —NHC(O)NR6BR6C, —N(O)m1, —NR6BR6C, —C(O)R6D, —C(O)OR6D, —C(O)NR6BR6C, —OR6A, —NR6BSO2R6A, —NR6BC(O)R6D, —NR6BC(O)OR6D, —NR6BOR6D, —OCX6,13, —OCHX6,12, substituted or unsubstituted alkyl, substituted or unsubstituted heteroalkyl, substituted or unsubstituted cycloalkyl, substituted or unsubstituted heterocycloalkyl, substituted or unsubstituted aryl, or substituted or unsubstituted heteroaryl; R7 is hydrogen, halogen, —CX7,13, —CHX7,12, —CH2X7,1, —CN, —SOn1R7A, —SOv1NR7BR7C, —NHNR7BR7C, —ONR7BR7C, —NHC(O)NHNR7BR7C, —NHC(O)NR7BR7C, —N(O)m1, —NR7BR7C, —C(O)R7D, —C(O)OR7D, —C(O)NR7BR7C, —OR7A, —NR7BSO2R7A, —NR7AC(O)R7C, —NR7BC(O)OR7D, —NR7BOR7D, —OCX7,13, —OCHX7,12, substituted or unsubstituted alkyl, substituted or unsubstituted heteroalkyl, substituted or unsubstituted cycloalkyl, substituted or unsubstituted heterocycloalkyl, substituted or unsubstituted aryl, or substituted or unsubstituted heteroaryl; R8 is hydrogen, halogen, —CX8,13, —CHX8,12, —CH2X8,1, —CN, —SOn1R8A, —SOv1NR8BR8C, —NHNR8BR8C, —ONR8BR8C, —NHC(O)NHNR8BR8C, —NHC(O)NR8BR8C, —N(O)m1, —NR8BR8C, —C(O)R8D, —C(O)OR8D, —C(O)NR8BR8C, —OR8A, —NR8BSO2R8A, —NR8BC(O)R8D, —NR8BC(O)OR8D, —NR8BOR8D, —OCX8,13, —OCHX8,12, substituted or unsubstituted alkyl, substituted or unsubstituted heteroalkyl, substituted or unsubstituted cycloalkyl, substituted or unsubstituted heterocycloalkyl, substituted or unsubstituted aryl, or substituted or unsubstituted heteroaryl; R9 is hydrogen, halogen, —CX9,13, —CHX9,12, —CH2X9,1, —CN, —SOn1R9A, —SOv1NR9BR9C, —NHNR9BR9C, —ONR9BR9C, —NHC(O)NHNR9BR9C, —NHC(O)NR9BR9C, —N(O)m1, —NR9BR9C, —C(O)R9D, —C(O)OR9D, —C(O)NR9BR9C, —OR9A, —NR9BSO2R9A, —NR9BC(O)R9D, —NR9BC(O)OR9D, —NR9BOR9D, —OCX9,13, —OCHX9,12, substituted or unsubstituted alkyl, substituted or unsubstituted heteroalkyl, substituted or unsubstituted cycloalkyl, substituted or unsubstituted heterocycloalkyl, substituted or unsubstituted aryl, or substituted or unsubstituted heteroaryl; R10 is hydrogen, halogen, —CX10,13, —CHX10,12, —CH2X10,1, —CN, —SOn1R10A, —SOv1NR10BR10C, —NHNR10BR10C, —ONR10BR10C, —NHC(O)NHNR10BR10C, —NHC(O)NR10BR10C, —N(O)m1, —NR10BR10C, —C(O)R10D, —C(O)OR10D, —C(O)NR10BR10C, —OR10A, —NR10BSO2R10A, —NR10BC(O)R10D, —NR10BC(O)OR10D, —NR10BOR10D, —OCX10,13, —OCHX10,12, substituted or unsubstituted alkyl, substituted or unsubstituted heteroalkyl, substituted or unsubstituted cycloalkyl, substituted or unsubstituted heterocycloalkyl, substituted or unsubstituted aryl, or substituted or unsubstituted heteroaryl; R11 is hydrogen, halogen, —CX11,13, —CHX11,12, —CH2X11,1, —CN, —SOn1R11A, —SOv1NR11BR11C, —NHNR11BR11C, —ONR11BR11C, —NHC(O)NHNR11BR11C, —NHC(O)NR11BR11C, —N(O)m1, —NR11BR11C, —C(O)R11D, —C(O)OR11D, —C(O)NR11BR11C, —OR11A, —NR11BSO2R11A, —NR11BC(O)R11D, —NR11BC(O)OR11D, —NR11BOR11D, —OCX11,13, —OCHX11,12, substituted or unsubstituted alkyl, substituted or unsubstituted heteroalkyl, substituted or unsubstituted cycloalkyl, substituted or unsubstituted heterocycloalkyl, substituted or unsubstituted aryl, or substituted or unsubstituted heteroaryl; R12 is hydrogen, halogen, —CX12,13, —CHX12,12, —CH2X12,1, —CN, —SOn1R12A, —SOv1NR12BR12C, —NHNR12BR12C, —ONR12BR12C, —NHC(O)NHNR12BR12C, —NHC(O)NR12BR12C, —N(O)m1, —NR12BR12C, —C(O)R12D, —C(O)OR12D, —C(O)NR12BR12C, —OR12A, —NR12BSO2R12A, —NR12BC(O)R12D, —NR12BC(O)OR12D, —NR12BOR12D, —OCX12,13, —OCHX12,12, substituted or unsubstituted alkyl, substituted or unsubstituted heteroalkyl, substituted or unsubstituted cycloalkyl, substituted or unsubstituted heterocycloalkyl, substituted or unsubstituted aryl, or substituted or unsubstituted heteroaryl; R13 is hydrogen, halogen, —CX13,13, —CHX13,12, —CH2X13,1, —CN, —SOn1R13A, —SOv1NR13BR13C, —NHNR13BR13C, —ONR13BR13C, —NHC(O)NHNR13BR13C, —NHC(O)NR13BR13C, —N(O)m1, —NR13BR13C, —C(O)R13D, —C(O)OR13D, —C(O)NR13BR13C, —OR13A, —NR13BSO2R13A, —NR13BC(O)R13D, —NR13BC(O)OR13D, —NR13BOR13D, —OCX13,13, —OCHX13,12, substituted or unsubstituted alkyl, substituted or unsubstituted heteroalkyl, substituted or unsubstituted cycloalkyl, substituted or unsubstituted heterocycloalkyl, substituted or unsubstituted aryl, or substituted or unsubstituted heteroaryl; R14 is hydrogen, halogen, —CX14,13, —CHX14,12, —CH2X14,1, —CN, —SOn1R14A, —SOv1NR14BR14C, —NHNR14BR14C, —ONR14BR14C, —NHC(O)NHNR14BR14C, —NHC(O)NR14BR14C, —N(O)m1, —NR14BR14C, —C(O)R14D, —C(O)OR14D, —C(O)NR14BR14C, —OR14A, —NR14BSO2R14A, —NR14BC(O)R14D, —NR14BC(O)OR14D, —NR14BOR14D, —OCX14,13, —OCHX14,12, substituted or unsubstituted alkyl, substituted or unsubstituted heteroalkyl, substituted or unsubstituted cycloalkyl, substituted or unsubstituted heterocycloalkyl, substituted or unsubstituted aryl, or substituted or unsubstituted heteroaryl; R15 is hydrogen, substituted or unsubstituted alkyl, substituted or unsubstituted heteroalkyl, substituted or unsubstituted cycloalkyl, substituted or unsubstituted heterocycloalkyl, substituted or unsubstituted aryl, or substituted or unsubstituted heteroaryl; R1A, R1B, R1C, R1D, R2A, R2B, R2C, R2D, R3A, R3B, R3C, R3D, R4A, R4B, R4C, R4D, R5A, R5B, R5C, R5D, R6A, R6B, R6C, R6D, R7A, R7B, R7C, R7D, R8A, R8B, R8C, R8D, R9A, R9B, R9C, R9D, R10A, R10B, R10C, R10D, R11A, R11B, R11C, R11D, R12A, R12B, R12C, R12D, R13A, R13B, R13C, R13D, R14A, R14B, R14C and R14D are independently hydrogen, halogen, —CF3, —CCl3, —CBr3, —CI3, —OH, —NH2, —COOH, —CONH2, —NO2, —SH, —SO3H, —SO4H, —SO2NH2, —NHNH2, —ONH2, —NHC(O)NHNH2, —NHC(O)NH2, —NHSO2H, —NHC(O)H, —NHC(O)—OH, —NHOH, —OCF3, —OCCl3, —OCBr3, —OCI3, —OCHF2, —OCHCl2, —OCHBr2, —OCHI2, substituted or unsubstituted alkyl, substituted or unsubstituted heteroalkyl, substituted or unsubstituted cycloalkyl, substituted or unsubstituted heterocycloalkyl, substituted or unsubstituted aryl, or substituted or unsubstituted heteroaryl; R1B, R1C, R2B, R2C, R3B, R3C, R4B, R4C, R5B, R5C, R6B, R6C, R7B, R7C, R8B, R8C, R9B, R9C, R10B, R10C, R11B, R11C, R12B, R12C, R13B, R13C, R14B and R14C substituents bonded to the same nitrogen atom may optionally be joined to form a substituted or unsubstituted heterocycloalkyl or substituted or unsubstituted heteroaryl; and X1,1, X2,1, X3,1, X4,1, X5,1, X6,1, X7,1, X8,1, X9,1, X10,1, X11,1, X12,1, X13,1 and X14,1 are independently —Cl, —Br, —I or —F.


Embodiment Q18. The method of embodiment Q17, wherein the dry eye disorder is a lacrimal gland disorder.


Embodiment Q19. The method of embodiment Q17, further comprising administering to the subject an anti-dry eye agent.


Embodiment Q20. A method of increasing lacrimation, comprising administering to a subject in need thereof a therapeutically effective amount of a compound of structural Formula (I):




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or a pharmaceutically acceptable salt thereof, wherein: L1 is —O—, —S—, —NR15— (e.g —NH—), —C(O)NR15, —C(O)—, substituted or unsubstituted alkylene or substituted or unsubstituted heteroalkylene; n1 is an integer from 0 to 4; m1 and v1 are independently 1 or 2; R1 is hydrogen, halogen, —CX1,13, —CHX1,12, —CH2X1,1, —CN, —SOn1R1A, —SOv1NR1BR1C, —NHNR1BR1C, —ONR1BR1C, —NHC(O)NHNR1BR1C, —NHC(O)NR1BR1C, —N(O)m1, —NR1BR1C, —C(O)R1D, —C(O)OR1D, —C(O)NR1BR1C, —OR1A, —NR1BSO2R1A, —NR1BC(O)R1D, —NR1BC(O)OR1D, —NR1BOR1D, —OCX1,13, —OCHX1,12, substituted or unsubstituted alkyl, substituted or unsubstituted heteroalkyl, substituted or unsubstituted cycloalkyl, substituted or unsubstituted heterocycloalkyl, substituted or unsubstituted aryl, or substituted or unsubstituted heteroaryl; R2 is hydrogen, halogen, —CX2,13, —CHX2,12, —CH2X2,1, —CN, —SOn1R2A, —SOv1NR2BR2C, —NHNR2BR2C, —ONR2BR2C, —NHC(O)NHNR2BR2C, —NHC(O)NR2BR2C, —N(O)m1, —NR2BR2C, —C(O)R2D, —C(O)OR2D, —C(O)NR2BR2C, —OR2A, —NR2BSO2R2A, —NR2BC(O)R2D, —NR2BC(O)OR2D, —NR2BOR2D, —OCX2,13, —OCHX2,12, substituted or unsubstituted alkyl, substituted or unsubstituted heteroalkyl, substituted or unsubstituted cycloalkyl, substituted or unsubstituted heterocycloalkyl, substituted or unsubstituted aryl, or substituted or unsubstituted heteroaryl; R3 is hydrogen, halogen, —CX3,13, —CHX3,12, —CH2X3,1, —CN, —SOn1R3A, —SOv1NR3BR3C, —NHNR3BR3C, —ONR3BR3C, —NHC(O)NHNR3BR3C, —NHC(O)NR3BR3C, —N(O)m1, —NR3BR3C, —C(O)R3D, —C(O)OR3D, —C(O)NR3BR3C, —OR3A, —NR3BSO2R3A, —NR3BC(O)R3D, —NR3BC(O)OR3D, —NR3BOR3D, —OCX3,13, —OCHX3,12, substituted or unsubstituted alkyl, substituted or unsubstituted heteroalkyl, substituted or unsubstituted cycloalkyl, substituted or unsubstituted heterocycloalkyl, substituted or unsubstituted aryl, or substituted or unsubstituted heteroaryl; R4 is hydrogen, halogen, —CX4,13, —CHX4,12, —CH2X4,1, —CN, —SOn1R4A, —SOv1NR4BR4C, —NHNR4BR4C, —ONR4BR4C, —NHC(O)NHNR4BR4C, —NHC(O)NR4BR4C, —N(O)m1, —NR4BR4C, —C(O)R4D, —C(O)OR4D, —C(O)NR4BR4C, —OR4A, —NR4BSO2R4A, —NR4BC(O)R4D, —NR4BC(O)OR4D, —NR4BOR4D, —OCX4,13, —OCHX4,12, substituted or unsubstituted alkyl, substituted or unsubstituted heteroalkyl, substituted or unsubstituted cycloalkyl, substituted or unsubstituted heterocycloalkyl, substituted or unsubstituted aryl, or substituted or unsubstituted heteroaryl; R5 is hydrogen, halogen, —CX5,13, —CHX5,12, —CH2X5,1, —CN, —SOn1R5A, —SOv1NR5BR5C, —NHNR5BR5C, —ONR5BR5C, —NHC(O)NHNR5BR5C, —NHC(O)NR5BR5C, —N(O)m1, —NR5BR5C, —C(O)R5D, —C(O)OR5D, —C(O)NR5BR5C, —OR5A, —NR5BSO2R5A, —NR5BC(O)R5D, —NR5BC(O)OR5D, —NR5BOR5D, —OCX5,13, —OCHX5,12, substituted or unsubstituted alkyl, substituted or unsubstituted heteroalkyl, substituted or unsubstituted cycloalkyl, substituted or unsubstituted heterocycloalkyl, substituted or unsubstituted aryl, or substituted or unsubstituted heteroaryl; R6 is hydrogen, halogen, —CX6,13, —CHX6,12, —CH2X6,1, —CN, —SOn1R6A, —SOv1NR6BR6C, —NHNR6BR6C, —ONR6BR6C, —NHC(O)NHNR6BR6C, —NHC(O)NR6BR6C, —N(O)m1, —NR6BR6C, —C(O)R6D, —C(O)OR6D, —C(O)NR6BR6C, —OR6A, —NR6BSO2R6A, —NR6BC(O)R6D, —NR6BC(O)OR6D, —NR6BOR6D, —OCX6,13, —OCHX6,12, substituted or unsubstituted alkyl, substituted or unsubstituted heteroalkyl, substituted or unsubstituted cycloalkyl, substituted or unsubstituted heterocycloalkyl, substituted or unsubstituted aryl, or substituted or unsubstituted heteroaryl; R7 is hydrogen, halogen, —CX7,13, —CHX7,12, —CH2X7,1, —CN, —SOn1R7A, —SOv1NR7BR7C, —NHNR7BR7C, —ONR7BR7C, —NHC(O)NHNR7BR7C, —NHC(O)NR7BR7C, —N(O)m1, —NR7BR7C, —C(O)R7D, —C(O)OR7D, —C(O)NR7BR7C, —OR7A, —NR7BSO2R7A, —NR7AC(O)R7C, —NR7BC(O)OR7D, —NR7BOR7D, —OCX7,13, —OCHX7,12, substituted or unsubstituted alkyl, substituted or unsubstituted heteroalkyl, substituted or unsubstituted cycloalkyl, substituted or unsubstituted heterocycloalkyl, substituted or unsubstituted aryl, or substituted or unsubstituted heteroaryl; R8 is hydrogen, halogen, —CX8,13, —CHX8,12, —CH2X8,1, —CN, —SOn1R8A, —SOv1NR8BR8C, —NHNR8BR8C, —ONR8BR8C, —NHC(O)NHNR8BR8C, —NHC(O)NR8BR8C, —N(O)m1, —NR8BR8C, —C(O)R8D, —C(O)OR8D, —C(O)NR8BR8C, —OR8A, —NR8BSO2R8A, —NR8BC(O)R8D, —NR8BC(O)OR8U, —NR8BOR8D, —OCX8,13, —OCHX8,12, substituted or unsubstituted alkyl, substituted or unsubstituted heteroalkyl, substituted or unsubstituted cycloalkyl, substituted or unsubstituted heterocycloalkyl, substituted or unsubstituted aryl, or substituted or unsubstituted heteroaryl; R9 is hydrogen, halogen, —CX9,13, —CHX9,12, —CH2X9,1, —CN, —SOn1R9A, —SOv1NR9BR9C, —NHNR9BR9C, —ONR9BR9C, —NHC(O)NHNR9BR9C, —NHC(O)NR9BR9C, —N(O)m1, —NR9BR9C, —C(O)R9D, —C(O)OR9D, —C(O)NR9BR9C, —OR9A, —NR9BSO2R9A, —NR9BC(O)R9D, —NR9BC(O)OR9D, —NR9BOR9D, —OCX9,13, —OCHX9,12, substituted or unsubstituted alkyl, substituted or unsubstituted heteroalkyl, substituted or unsubstituted cycloalkyl, substituted or unsubstituted heterocycloalkyl, substituted or unsubstituted aryl, or substituted or unsubstituted heteroaryl; R10 is hydrogen, halogen, —CX10,13, —CHX10,12, —CH2X10,1, —CN, —SOn1R10A, —SOv1NR10BR10C, —NHNR10BR10C, —ONR10BR10C, —NHC(O)NHNR10BR10C, —NHC(O)NR10BR10C, —N(O)m1, —NR10BR10C, —C(O)R10D, —C(O)OR10D, —C(O)NR10BR10C, —OR10A, —NR10BSO2R10A, —NR10BC(O)R10D, —NR10BC(O)OR10D, —NR10BOR10D, —OCX10,13, —OCHX10,12, substituted or unsubstituted alkyl, substituted or unsubstituted heteroalkyl, substituted or unsubstituted cycloalkyl, substituted or unsubstituted heterocycloalkyl, substituted or unsubstituted aryl, or substituted or unsubstituted heteroaryl; R11 is hydrogen, halogen, —CX11,13, —CHX11,12, —CH2X11,1, —CN, —SOn1R11A, —SOv1NR11BR11C, —NHNR11BR11C, —ONR11BR11C, —NHC(O)NHNR11BR11C, —NHC(O)NR11BR11C, —N(O)m1, —NR11BR11C, —C(O)R11D, —C(O)OR11D, —C(O)NR11BR11C, —OR11A, —NR11BSO2R11A, —NR11BC(O)R11D, —NR11BC(O)OR11D, —NR11BOR11D, —OCX11,13, —OCHX11,12, substituted or unsubstituted alkyl, substituted or unsubstituted heteroalkyl, substituted or unsubstituted cycloalkyl, substituted or unsubstituted heterocycloalkyl, substituted or unsubstituted aryl, or substituted or unsubstituted heteroaryl; R12 is hydrogen, halogen, —CX12,13, —CHX12,12, —CH2X12,1, —CN, —SOn1R12A, —SOv1NR12BR12C, —NHNR12BR12C, —ONR12BR12C, —NHC(O)NHNR12BR12C, —NHC(O)NR12BR12C, —N(O)m1, —NR12BR12C, —C(O)R12D, —C(O)OR12D, —C(O)NR12BR12C, —OR12A, —NR12BSO2R12A, —NR12BC(O)R12D, —NR12BC(O)OR12D, —NR12BOR12D, —OCX12,13, —OCHX12,12, substituted or unsubstituted alkyl, substituted or unsubstituted heteroalkyl, substituted or unsubstituted cycloalkyl, substituted or unsubstituted heterocycloalkyl, substituted or unsubstituted aryl, or substituted or unsubstituted heteroaryl; R13 is hydrogen, halogen, —CX13,13, —CHX13,12, —CH2X13,1, —CN, —SOn1R13A, —SOv1NR13BR13C, —NHNR13BR13C, —ONR13BR13C, —NHC(O)NHNR13BR13C, —NHC(O)NR13BR13C, —N(O)m1, —NR13BR13C, —C(O)R13D, —C(O)OR13D, —C(O)NR13BR13C, —OR13A, —NR13BSO2R13A, —NR13BC(O)R13D, —NR13BC(O)OR13D, —NR13BOR13D, —OCX13,13, —OCHX13,12, substituted or unsubstituted alkyl, substituted or unsubstituted heteroalkyl, substituted or unsubstituted cycloalkyl, substituted or unsubstituted heterocycloalkyl, substituted or unsubstituted aryl, or substituted or unsubstituted heteroaryl; R14 is hydrogen, halogen, —CX14,13, —CHX14,12, —CH2X14,1, —CN, —SOn1R14A, —SOv1NR14BR14C, —NHNR14BR14C, —ONR14BR14C, —NHC(O)NHNR14BR14C, —NHC(O)NR14BR14C, —N(O)m1, —NR14BR14C, —C(O)R14D, —C(O)OR14D, —C(O)NR14BR14C, —OR14A, —NR14BSO2R14A, —NR14BC(O)R14D, —NR14BC(O)OR14D, —NR14BOR14D, —OCX14,13, —OCHX14,12, substituted or unsubstituted alkyl, substituted or unsubstituted heteroalkyl, substituted or unsubstituted cycloalkyl, substituted or unsubstituted heterocycloalkyl, substituted or unsubstituted aryl, or substituted or unsubstituted heteroaryl; R15 is hydrogen, substituted or unsubstituted alkyl, substituted or unsubstituted heteroalkyl, substituted or unsubstituted cycloalkyl, substituted or unsubstituted heterocycloalkyl, substituted or unsubstituted aryl, or substituted or unsubstituted heteroaryl; R1A, R1B, R1C, R1D, R2A, R2B, R2C, R2D, R3A, R3B, R3C, R3D, R4A, R4B, R4C, R4D, R5A, R5B, R5C, R5D, R6A, R6B, R6C, R6D, R7A, R7B, R7C, R7D, R8A, R8B, R8C, R8D, R9A, R9B, R9C, R9D, R10A, R10B, R10C, R10D, R11A, R11B, R11C, R11D, R12A, R12B, R12C, R12D, R13A, R13B, R13C, R13D, R14A, R14B, R14C and R14D are independently hydrogen, halogen, —CF3, —CCl3, —CBr3, —CI3, —OH, —NH2, —COOH, —CONH2, —NO2, —SH, —SO3H, —SO4H, —SO2NH2, —NHNH2, —ONH2, —NHC(O)NHNH2, —NHC(O)NH2, —NHSO2H, —NHC(O)H, —NHC(O)—OH, —NHOH, —OCF3, —OCCl3, —OCBr3, —OCI3, —OCHF2, —OCHCl2, —OCHBr2, —OCHI2, substituted or unsubstituted alkyl, substituted or unsubstituted heteroalkyl, substituted or unsubstituted cycloalkyl, substituted or unsubstituted heterocycloalkyl, substituted or unsubstituted aryl, or substituted or unsubstituted heteroaryl; R1B, R1C, R2B, R2C, R3B, R3C, R4B, R4C, R5B, R5C, R6B, R6C, R7B, R7C, R8B, R8C, R9B, R9C, R10B, R10C, R11B, R11C, R12B, R12C, R13B, R13C, R14B and R14C substituents bonded to the same nitrogen atom may optionally be joined to form a substituted or unsubstituted heterocycloalkyl or substituted or unsubstituted heteroaryl; and X1,1, X2,1, X3,1, X4,1, X5,1, X6,1, X7,1, X8,1, X9,1, X10,1, X11,1, X12,1, X13,1 and X14,1 are independently —Cl, —Br, —I or —F.


Embodiment Q21. A method of activating Cystic Fibrosis Transmembrane Conductance Regulator (CFTR), comprising contacting CFTR with a compound of structural Formula (I):




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or a pharmaceutically acceptable salt thereof, wherein: L1 is —O—, —S—, —NR15— (e.g —NH—), —C(O)NR15, —C(O)—, substituted or unsubstituted alkylene or substituted or unsubstituted heteroalkylene; n1 is an integer from 0 to 4; m1 and v1 are independently 1 or 2; R1 is hydrogen, halogen, —CX1,13, —CHX1,12, —CH2X1,1, —CN, —SOn1R1A, —SOv1NR1BR1C, —NHNR1BR1C, —ONR1BR1C, —NHC(O)NHNR1BR1C, —NHC(O)NR1BR1C, —N(O)m1, —NR1BR1C, —C(O)R1D, —C(O)OR1D, —C(O)NR1BR1C, —OR1A, —NR1BSO2R1A, —NR1BC(O)R1D, —NR1BC(O)OR1D, —NR1BOR1D, —OCX1,13, —OCHX1,12, substituted or unsubstituted alkyl, substituted or unsubstituted heteroalkyl, substituted or unsubstituted cycloalkyl, substituted or unsubstituted heterocycloalkyl, substituted or unsubstituted aryl, or substituted or unsubstituted heteroaryl; R2 is hydrogen, halogen, —CX2,13, —CHX2,12, —CH2X2,1, —CN, —SOn1R2A, —SOv1NR2BR2C, —NHNR2BR2C, —ONR2BR2C, —NHC(O)NHNR2BR2C, —NHC(O)NR2BR2C, —N(O)m1, —NR2BR2C, —C(O)R2D, —C(O)OR2D, —C(O)NR2BR2C, —OR2A, —NR2BSO2R2A, —NR2BC(O)R2D, —NR2BC(O)OR2D, —NR2BOR2D, —OCX2,13, —OCHX2,12, substituted or unsubstituted alkyl, substituted or unsubstituted heteroalkyl, substituted or unsubstituted cycloalkyl, substituted or unsubstituted heterocycloalkyl, substituted or unsubstituted aryl, or substituted or unsubstituted heteroaryl; R3 is hydrogen, halogen, —CX3,13, —CHX3,12, —CH2X3,1, —CN, —SOn1R3A, —SOv1NR3BR3C, —NHNR3BR3C, —ONR3BR3C, —NHC(O)NHNR3BR3C, —NHC(O)NR3BR3C, —N(O)m1, —NR3BR3C, —C(O)R3D, —C(O)OR3D, —C(O)NR3BR3C, —OR3A, —NR3BSO2R3A, —NR3BC(O)R3D, —NR3BC(O)OR3D, —NR3BOR3D, —OCX3,13, —OCHX3,12, substituted or unsubstituted alkyl, substituted or unsubstituted heteroalkyl, substituted or unsubstituted cycloalkyl, substituted or unsubstituted heterocycloalkyl, substituted or unsubstituted aryl, or substituted or unsubstituted heteroaryl; R4 is hydrogen, halogen, —CX4,13, —CHX4,12, —CH2X4,1, —CN, —SOn1R4A, —SOv1NR4BR4C, —NHNR4BR4C, —ONR4BR4C, —NHC(O)NHNR4BR4C, —NHC(O)NR4BR4C, —N(O)m1, —NR4BR4C, —C(O)R4D, —C(O)OR4D, —C(O)NR4BR4C, —OR4A, —NR4BSO2R4A, —NR4BC(O)R4D, —NR4BC(O)OR4D, —NR4BOR4D, —OCX4,13, —OCHX4,12, substituted or unsubstituted alkyl, substituted or unsubstituted heteroalkyl, substituted or unsubstituted cycloalkyl, substituted or unsubstituted heterocycloalkyl, substituted or unsubstituted aryl, or substituted or unsubstituted heteroaryl; R5 is hydrogen, halogen, —CX5,13, —CHX5,12, —CH2X5,1, —CN, —SOn1R5A, —SOv1NR5BR5C, —NHNR5BR5C, —ONR5BR5C, —NHC(O)NHNR5BR5C, —NHC(O)NR5BR5C, —N(O)m1, —NR5BR5C, —C(O)R5D, —C(O)OR5D, —C(O)NR5BR5C, —OR5A, —NR5BSO2R5A, —NR5BC(O)R5D, —NR5BC(O)OR5D, —NR5BOR5D, —OCX5,13, —OCHX5,12, substituted or unsubstituted alkyl, substituted or unsubstituted heteroalkyl, substituted or unsubstituted cycloalkyl, substituted or unsubstituted heterocycloalkyl, substituted or unsubstituted aryl, or substituted or unsubstituted heteroaryl; R6 is hydrogen, halogen, —CX6,13, —CHX6,12, —CH2X6,1, —CN, —SOn1R6A, —SOv1NR6BR6C, —NHNR6BR6C, —ONR6BR6C, —NHC(O)NHNR6BR6C, —NHC(O)NR6BR6C, —N(O)m1, —NR6BR6C, —C(O)R6D, —C(O)OR6D, —C(O)NR6BR6C, —OR6A, —NR6BSO2R6A, —NR6BC(O)R6D, —NR6BC(O)OR6D, —NR6BOR6D, —OCX6,13, —OCHX6,12, substituted or unsubstituted alkyl, substituted or unsubstituted heteroalkyl, substituted or unsubstituted cycloalkyl, substituted or unsubstituted heterocycloalkyl, substituted or unsubstituted aryl, or substituted or unsubstituted heteroaryl; R7 is hydrogen, halogen, —CX7,13, —CHX7,12, —CH2X7,1, —CN, —SOn1R7A, —SOv1NR7BR7C, —NHNR7BR7C, —ONR7BR7C, —NHC(O)NHNR7BR7C, —NHC(O)NR7BR7C, —N(O)m1, —NR7BR7C, —C(O)R7D, —C(O)OR7D, —C(O)NR7BR7C, —OR7A, —NR7BSO2R7A, —NR7AC(O)R7C, —NR7BC(O)OR7D, —NR7BOR7D, —OCX7,13, —OCHX7,12, substituted or unsubstituted alkyl, substituted or unsubstituted heteroalkyl, substituted or unsubstituted cycloalkyl, substituted or unsubstituted heterocycloalkyl, substituted or unsubstituted aryl, or substituted or unsubstituted heteroaryl; R8 is hydrogen, halogen, —CX8,13, —CHX8,12, —CH2X8,1, —CN, —SOn1R8A, —SOv1NR8BR8C, —NHNR8BR8C, —ONR8BR8C, —NHC(O)NHNR8BR8C, —NHC(O)NR8BR8C, —N(O)m1, —NR8BR8C, —C(O)R8D, —C(O)OR8D, —C(O)NR8BR8C, —OR8A, —NR8BSO2R8A, —NR8BC(O)R8D, —NR8BC(O)OR8D, —NR8BOR8D, —OCX8,13, —OCHX8,12, substituted or unsubstituted alkyl, substituted or unsubstituted heteroalkyl, substituted or unsubstituted cycloalkyl, substituted or unsubstituted heterocycloalkyl, substituted or unsubstituted aryl, or substituted or unsubstituted heteroaryl; R9 is hydrogen, halogen, —CX9,13, —CHX9,12, —CH2X9,1, —CN, —SOn1R9A, —SOv1NR9BR9C, —NHNR9BR9C, —ONR9BR9C, —NHC(O)NHNR9BR9C, —NHC(O)NR9BR9C, —N(O)m1, —NR9BR9C, —C(O)R9D, —C(O)OR9D, —C(O)NR9BR9C, —OR9A, —NR9BSO2R9A, —NR9BC(O)R9D, —NR9BC(O)OR9D, —NR9BOR9D, —OCX9,13, —OCHX9,12, substituted or unsubstituted alkyl, substituted or unsubstituted heteroalkyl, substituted or unsubstituted cycloalkyl, substituted or unsubstituted heterocycloalkyl, substituted or unsubstituted aryl, or substituted or unsubstituted heteroaryl; R10 is hydrogen, halogen, —CX10,13, —CHX10,12, —CH2X10,1, —CN, —SOn1R10A, —SOv1NR10BR10C, —NHNR10BR10C, —ONR10BR10C, —NHC(O)NHNR10BR10C, —NHC(O)NR10BR10C, —N(O)m1, —NR10BR10C, —C(O)R10D, —C(O)OR10D, —C(O)NR10BR10C, —OR10A, —NR10BSO2R10A, —NR10BC(O)R10D, —NR10BC(O)OR10D, —NR10BOR10D, —OCX10,13, —OCHX10,12, substituted or unsubstituted alkyl, substituted or unsubstituted heteroalkyl, substituted or unsubstituted cycloalkyl, substituted or unsubstituted heterocycloalkyl, substituted or unsubstituted aryl, or substituted or unsubstituted heteroaryl; R11 is hydrogen, halogen, —CX11,13, —CHX11,12, —CH2X11,1, —CN, —SOn1R11A, —SOv1NR11BR11C, —NHNR11BR11C, —ONR11BR11C, —NHC(O)NHNR11BR11C, —NHC(O)NR11BR11C, —N(O)m1, —NR11BR11C, —C(O)R11D, —C(O)OR11D, —C(O)NR11BR11C, —OR11A, —NR11BSO2R11A, —NR11BC(O)R11D, —NR11BC(O)OR11D, —NR11BOR11D, —OCX11,13, —OCHX11,12, substituted or unsubstituted alkyl, substituted or unsubstituted heteroalkyl, substituted or unsubstituted cycloalkyl, substituted or unsubstituted heterocycloalkyl, substituted or unsubstituted aryl, or substituted or unsubstituted heteroaryl; R12 is hydrogen, halogen, —CX12,13, —CHX12,12, —CH2X12,1, —CN, —SOn1R12A, —SOv1NR12BR12C, —NHNR12BR12C, —ONR12BR12C, —NHC(O)NHNR12BR12C, —NHC(O)NR12BR12C, —N(O)m1, —NR12BR12C, —C(O)R12D, —C(O)OR12D, —C(O)NR12BR12C, —OR12A, —NR12BSO2R12A, —NR12BC(O)R12D, —NR12BC(O)OR12D, —NR12BOR12D, —OCX12,13, —OCHX12,12, substituted or unsubstituted alkyl, substituted or unsubstituted heteroalkyl, substituted or unsubstituted cycloalkyl, substituted or unsubstituted heterocycloalkyl, substituted or unsubstituted aryl, or substituted or unsubstituted heteroaryl; R13 is hydrogen, halogen, —CX13,13, —CHX13,12, —CH2X13,1, —CN, —SOn1R13A, —SOv1NR13BR13C, —NHNR13BR13C, —ONR13BR13C, —NHC(O)NHNR13BR13C, —NHC(O)NR13BR13C, —N(O)m1, —NR13BR13C, —C(O)R13D, —C(O)OR13D, —C(O)NR13BR13C, —OR13A, —NR13BSO2R13A, —NR13BC(O)R13D, —NR13BC(O)OR13D, —NR13BOR13D, —OCX13,13, —OCHX13,12, substituted or unsubstituted alkyl, substituted or unsubstituted heteroalkyl, substituted or unsubstituted cycloalkyl, substituted or unsubstituted heterocycloalkyl, substituted or unsubstituted aryl, or substituted or unsubstituted heteroaryl; R14 is hydrogen, halogen, —CX14,13, —CHX14,12, —CH2X14,1, —CN, —SOn1R14A, —SOv1NR14BR14C, —NHNR14BR14C, —ONR14BR14C, —NHC(O)NHNR14BR14C, —NHC(O)NR14BR14C, —N(O)m1, —NR14BR14C, —C(O)R14D, —C(O)OR14D, —C(O)NR14BR14C, —OR14A, —NR14BSO2R14A, —NR14BC(O)R14D, —NR14BC(O)OR14D, —NR14BOR14D, —OCX14,13, —OCHX14,12, substituted or unsubstituted alkyl, substituted or unsubstituted heteroalkyl, substituted or unsubstituted cycloalkyl, substituted or unsubstituted heterocycloalkyl, substituted or unsubstituted aryl, or substituted or unsubstituted heteroaryl; R15 is hydrogen, substituted or unsubstituted alkyl, substituted or unsubstituted heteroalkyl, substituted or unsubstituted cycloalkyl, substituted or unsubstituted heterocycloalkyl, substituted or unsubstituted aryl, or substituted or unsubstituted heteroaryl; R1A, R1B, R1C, R1D, R2A, R2B, R2C, R2D, R3A, R3B, R3C, R3D, R4A, R4B, R4C, R4D, R5A, R5B, R5C, R5D, R6A, R6B, R6C, R6D, R7A, R7B, R7C, R7D, R8A, R8B, R8C, R8D, R9A, R9B, R9C, R9D, R10A, R10B, R10C, R10D, R11A, R11B, R11C, R11D, R12A, R12B, R12C, R12D, R13A, R13B, R13C, R13D, R14A, R14B, R14C and R14D are independently hydrogen, halogen, —CF3, —CCl3, —CBr3, —CI3, —OH, —NH2, —COOH, —CONH2, —NO2, —SH, —SO3H, —SO4H, —SO2NH2, —NHNH2, —ONH2, —NHC(O)NHNH2, —NHC(O)NH2, —NHSO2H, —NHC(O)H, —NHC(O)—OH, —NHOH, —OCF3, —OCCl3, —OCBr3, —OCI3, —OCHF2, —OCHCl2, —OCHBr2, —OCHI2, substituted or unsubstituted alkyl, substituted or unsubstituted heteroalkyl, substituted or unsubstituted cycloalkyl, substituted or unsubstituted heterocycloalkyl, substituted or unsubstituted aryl, or substituted or unsubstituted heteroaryl; R1B, R1C, R2B, R2C, R3B, R3C, R4B, R4C, R5B, R5C, R6B, R6C, R7B, R7C, R8B, R8C, R9B, R9C, R10B, R10C, R11B, R11C, R12B, R12C, R13B, R13C, R14B and R14C bonded to the same nitrogen atom may optionally be joined to form a substituted or unsubstituted heterocycloalkyl or substituted or unsubstituted heteroaryl; and X1,1, X2,1, X3,1, X4,1, X5,1, X6,1, X7,1, X8,1, X9,1, X10,1, X11,1, X12,1, X13,1 and X14,1 are independently —Cl, —Br, —I or —F.


Further embodiments contemplated herein include embodiments 1 to 73 following.


Embodiment 1. A compound of Formula I:




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pharmaceutically acceptable salt thereof, wherein: L1 is a bond, —S—, —N(R15)—, —C(O)N(R15)—, or substituted or unsubstituted alkylene, and R20 is substituted or unsubstituted heterocycloalkyl, substituted or unsubstituted aryl or substituted or unsubstituted heteroaryl; or -L1-R20 is unsubstituted C2-C4 alkyl; n1, n2, n3, n4, n5, n6, n7, n8, and n9 are independently an integer from 0 to 4; m1, m2, m3, m4, m5, m6, m7, m8, m9, v1, v2, v3, v4, v5, v6, v7, v8, and v9 are independently 1 or 2; R1 is hydrogen, halogen, —CX1,13, —CHX1,12, —CH2X1,1, —CN, —SOn1R1A, —SOv1NR1BR1C, —NHNR1BR1C, —ONR1BR1C, —NHC(O)NHNR1BR1C, —NHC(O)NR1BR1C, —N(O)m1, —NR1BR1C, —C(O)R1D, —C(O)OR1D, —C(O)NR1BR1C, —OR1A, —NR1BSO2R1A, —NR1BC(O)R1D, —NR1BC(O)OR1D, —NR1BOR1D, —OCX1,13, —OCHX1,12, substituted or unsubstituted alkyl, substituted or unsubstituted heteroalkyl, substituted or unsubstituted cycloalkyl, substituted or unsubstituted heterocycloalkyl, substituted or unsubstituted aryl, or substituted or unsubstituted heteroaryl; R2 is hydrogen, halogen, —CX2,13, —CHX2,12, —CH2X2,1, —CN, —SOn2R2A, —SOv2NR2BR2C, —NHNR2BR2C, —ONR2BR2C, —NHC(O)NHNR2BR2C, —NHC(O)NR2BR2C, —N(O)m2, —NR2BR2C, —C(O)R2D, —C(O)OR2D, —C(O)NR2BR2C, —OR2A, —NR2BSO2R2A, —NR2BC(O)R2D, —NR2BC(O)OR2D, —NR2BOR2D, —OCX2,13, —OCHX2 4, substituted or unsubstituted alkyl, substituted or unsubstituted heteroalkyl, substituted or unsubstituted cycloalkyl, substituted or unsubstituted heterocycloalkyl, substituted or unsubstituted aryl, or substituted or unsubstituted heteroaryl; R3 is hydrogen, halogen, —CX3,13, —CHX3,12, —CH2X3,1, —CN, —SOn3R3A, —SOv3NR3BR3C, —NHNR3BR3C, —ONR3BR3C, —NHC(O)NHNR3BR3C, —NHC(O)NR3BR3C, —N(O)m3, —NR3BR3C, —C(O)R3D, —C(O)OR3D, —C(O)NR3BR3C, —OR3A, —NR3BSO2R3A, —NR3BC(O)R3D, —NR3BC(O)OR3D, —NR3BOR3D, —OCX3,13, —OCHX3,12, substituted or unsubstituted alkyl, substituted or unsubstituted heteroalkyl, substituted or unsubstituted cycloalkyl, substituted or unsubstituted heterocycloalkyl, substituted or unsubstituted aryl, or substituted or unsubstituted heteroaryl, R2 and R3 are optionally joined to form, together with the atoms to which they are attached, a substituted or unsubstituted heteroaryl; R4 is hydrogen, halogen, —CX4,13, —CHX4,12, —CH2X4,1, —CN, —SOn4R4A, —SOv4NR4BR4C, —NHNR4BR4C, —ONR4BR4C, —NHC(O)NHNR4BR4C, —NHC(O)NR4BR4C, —N(O)m4, —NR4BR4C, —C(O)R4D, —C(O)OR4D, —C(O)NR4BR4C, —OR4A, —NR4BSO2R4A, —NR4BC(O)R4D, —NR4BC(O)OR4D, —NR4BOR4D, —OCX4,13, —OCHX4,12, substituted or unsubstituted alkyl, substituted or unsubstituted heteroalkyl, substituted or unsubstituted cycloalkyl, substituted or unsubstituted heterocycloalkyl, substituted or un substituted aryl, or substituted or unsubstituted heteroaryl; R5 is hydrogen, halogen, —CX5,13, —CHX5,12, —CH2X5,1, —CN, —SOn5R5A, —SOv5NR5BR5C, —NHNR5BR5C, —ONR5BR5C, —NHC(O)NHNR5BR5C, —NHC(O)NR5BR5C, —N(O)m5, —NR5BR5C, —C(O)R5D, —C(O)OR5D, —C(O)NR5BR5C, —OR5A, —NR5BSO2R5A, —NR5BC(O)R5D, —NR5BC(O)OR5D, —NR5BOR5D, —OCX5,13, —OCHX5,12, substituted or unsubstituted alkyl, substituted or unsubstituted heteroalkyl, substituted or unsubstituted cycloalkyl, substituted or unsubstituted heterocycloalkyl, substituted or unsubstituted aryl, or substituted or unsubstituted heteroaryl; R1 and R2, R2 and R3, R3 and R4, or R1 and R5 are optionally joined to form, together with the atoms to which they are attached, substituted or unsubstituted cycloalkyl, substituted or unsubstituted heterocycloalkyl, substituted or unsubstituted aryl, or substituted or unsubstituted heteroaryl; R6 is hydrogen, halogen, —CX6,13, —CHX6,12, —CH2X6,1, —CN, —SOn6R6A, —SOv6NR6BR6C, —NHNR6BR6C, —ONR6BR6C, —NHC(O)NHNR6BR6C, —NHC(O)NR6BR6C, —N(O)m6, —NR6BR6C, —C(O)R6D, —C(O)OR6D, —C(O)NR6BR6C, —OR6A, —NR6BSO2R6A, —NR6BC(O)R6D, —NR6BC(O)OR6D, —NR6BOR6D, —OCX6,13, —OCHX6,12, substituted or unsubstituted alkyl, substituted or unsubstituted heteroalkyl, substituted or unsubstituted cycloalkyl, substituted or unsubstituted heterocycloalkyl, substituted or unsubstituted aryl, or substituted or unsubstituted heteroaryl; R7 is hydrogen, halogen, —CX7,13, —CHX7,12, —CH2X7,1, —CN, —SOn7R7A, —SOv7NR7BR7C, —NHNR7BR7C, —ONR7BR7C, —NHC(O)NHNR7BR7C, —NHC(O)NR7BR7C, —N(O)m7, —NR7BR7C, —C(O)R7D, —C(O)OR7D, —C(O)NR7BR7C, —OR7A, —NR7BSO2R7A, —NR7AC(O)R7C, —NR7BC(O)OR7D, —NR7BOR7D, —OCX7,13, —OCHX7,12, substituted or unsubstituted alkyl, substituted or unsubstituted heteroalkyl, substituted or unsubstituted cycloalkyl, substituted or unsubstituted heterocycloalkyl, substituted or unsubstituted aryl, or substituted or unsubstituted heteroaryl; R8 is hydrogen, halogen, —CX8,13, —CHX8,12, —CH2X8,1, —CN, —SOn8R8A, —SOv8NR8BR8C, —NHNR8BR8C, —ONR8BR8C, —NHC(O)NHNR8BR8C, —NHC(O)NR8BR8C, —N(O)m8, —NR8BR8C, —C(O)R8D, —C(O)OR8D, —C(O)NR8BR8C, —OR8A, —NR8BSO2R8A, —NR8BC(O)R8D, —NR8BC(O)OR8D, —NR8BOR8D, —OCX8,13, —OCHX8,12, substituted or unsubstituted alkyl, substituted or unsubstituted heteroalkyl, substituted or unsubstituted cycloalkyl, substituted or unsubstituted heterocycloalkyl, substituted or unsubstituted aryl, or substituted or unsubstituted heteroaryl; R9 is hydrogen, halogen, —CX9,13, —CHX9,12, —CH2X9,1, —CN, —SOn9R9A, —SOv9NR9BR9C, —NHNR9BR9C, —ONR9BR9C, —NHC(O)NHNR9BR9C, —NHC(O)NR9BR9C, —N(O)m9, —NR9BR9C, —C(O)R9D, —C(O)OR9D, —C(O)NR9BR9C, —OR9A, —NR9BSO2R9A, —NR9BC(O)R9D, —NR9BC(O)OR9D, —NR9BOR9D, —OCX9,13, —OCHX9,12, substituted or unsubstituted alkyl, substituted or unsubstituted heteroalkyl, substituted or unsubstituted cycloalkyl, substituted or unsubstituted heterocycloalkyl, substituted or unsubstituted aryl, or substituted or unsubstituted heteroaryl; R1A, R1B, R1C, R1D, R2A, R2B, R2C, R2D, R3A, R3B, R3C, R3D, R4A, R4B, R4C, R4D, R5A, R5B, R5C, R5D, R6A, R6B, R6C, R6D, R7A, R7B, R7C, R7D, R8A, R8B, R8C, R8D, R9A, R9B, R9C and R9D are independently hydrogen, halogen, —CF3, —CCl3, —CBr3, —CI3, —OH, —NH2, —COOH, —CONH2, —NO2, —SH, —SO3H, —SO4H, —SO2NH2, —NHNH2, —ONH2, —NHC(O)NHNH2, —NHC(O)NH2, —NHSO2H, —NHC(O)H, —NHC(O)—OH, —NHOH, —OCF3, —OCCl3, —OCBr3, —OCI3, —OCHF2, —OCHCl2, —OCHBr2, —OCHI2, substituted or unsubstituted alkyl, substituted or unsubstituted heteroalkyl, substituted or unsubstituted cycloalkyl, substituted or unsubstituted heterocycloalkyl, substituted or unsubstituted aryl, or substituted or unsubstituted heteroaryl; R1B, R1C, R2B, R2C, R3B, R3C, R4B, R4C, R5B, R5C, R6B, R6C, R7B, R7C, R8B, R8C, R9B and R9C substituents bonded to the same nitrogen atom may optionally be joined to form a substituted or unsubstituted heterocycloalkyl or substituted or unsubstituted heteroaryl; R15 is hydrogen, substituted or unsubstituted alkyl, substituted or unsubstituted heteroalkyl, substituted or unsubstituted cycloalkyl, substituted or unsubstituted heterocycloalkyl, substituted or unsubstituted aryl, or substituted or unsubstituted heteroaryl; and X1,1, X2,1, X3,1, X4,1, X5,1, X6,1, X7,1, X8,1, X9,1 are independently —Cl, —Br, —I or —F, with proviso that when L1 is —CH2—, R3 is —NO2 and R6, R7, R8 and R9 are hydrogen, then R5 is not —NH2, or when L1 is —CH2—, R1 is —NO2, and R6, R7, R8 and R9 are hydrogen, then R4 is not NH2, with proviso that when L1-R20 is unsubstituted C2-C4 alkyl, then at least one of R1, R2, R3, R4 and R5 is NO2, with proviso that when L1 is —CH2— and R20 is substituted or unsubstituted heterocycloalkyl or substituted or unsubstituted heteroaryl, then at least one of R1, R2, R3, R4 and R5 is NO2, with proviso that when L1 is a —CH2— and R20 is unsubstituted phenyl, then at least one of R1, R2, R3, R4 and R5 is halogen, NO2, NH2, COOCH3, COOH, CN or substituted C1-C3 alkyl or R2 and R3 is joined to form, together with the atoms to which they are attached, substituted or unsubstituted heteroaryl.


Embodiment 2. The compound of embodiment 1, wherein the compound is Formula IA:




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wherein: L1 is —O—, —S—, —N(R15)—, —C(O)N(R15)—, —C(O)—, substituted or unsubstituted alkylene; n10, n11, n12, n13, and n14 are independently an integer from 0 to 4; m10, m11, m12, m13, m14, v10, v11, v12, v13 and v14 are independently 1 or 2; R10 is hydrogen, halogen, —CX10,13, —CHX10,12, —CH2X10,1, —CN, —SOn10R10A, —SOv10NR10BR10C, —NHNR10BR10C, —ONR10BR10C, —NHC(O)NHNR10BR10C, —NHC(O)NR10BR10C, —N(O)m10, —C(O)R10D, —C(O)OR10D, —C(O)NR10BR10C, —OR10A, —NR10BSO2R10A, —NR10BC(O)R10D, —NR10BC(O)OR10D, —NR10BOR10D, —OCX10,13, —OCHX10,12, substituted or unsubstituted alkyl, substituted or unsubstituted heteroalkyl, substituted or unsubstituted cycloalkyl, or substituted or unsubstituted aryl; R11 is hydrogen, halogen, —CX11,13, —CHX11,12, —CH2X11,1, —CN, —SOn11R11A, —SOv11NR11BR11C, —NHNR11BR11C, —ONR11BR11C, —NHC(O)NHNR11BR11C, —NHC(O)NR11BR11C, —N(O)m11, —NR11BR11C, —C(O)R11D, —C(O)OR11D, —C(O)NR11BR11C, —OR11A, —NR11BSO2R11A, —NR11BC(O)R11D, —NR11BC(O)OR11D, —NR11BOR11D, —OCX11,13, —OCHX11,12, substituted or unsubstituted alkyl, substituted or unsubstituted heteroalkyl, substituted or unsubstituted cycloalkyl or substituted or unsubstituted aryl; R12 is hydrogen, halogen, —CX12,13, —CHX12,12, —CH2X12,1, —CN, —SOn12R12A, —SOv12NR12BR12C, —NHNR12BR12C, —ONR12BR12C, —NHC(O)NHNR12BR12C, —NHC(O)NR12BR12C, —N(O)m12, —C(O)R12D, —C(O)OR12D, —C(O)NR12BR12C, —OR12A, —NR12BSO2R12A, —NR12BC(O)R12D, —NR12BC(O)OR12D, —NR12BOR12D, —OCX12,13, —OCHX12,12, substituted or unsubstituted alkyl, substituted or unsubstituted heteroalkyl, substituted or unsubstituted cycloalkyl, or substituted or unsubstituted aryl; R13 is hydrogen, halogen, —CX13,13, —CHX13,12, —CH2X13,1, —CN, —SOn13R13A, —SOv13NR13BR13C, —NHNR13BR13C, —ONR13BR13C, —NHC(O)NHNR13BR13C, —NHC(O)NR13BR13C, —N(O)m13, —C(O)R13D, —C(O)OR13D, —C(O)NR13BR13C, —OR13A, —NR13BSO2R13A, —NR13BC(O)R13D, —NR13BC(O)OR13D, —NR13BOR13D, —OCX13,13, —OCHX13,12, substituted or unsubstituted alkyl, substituted or unsubstituted heteroalkyl, substituted or unsubstituted cycloalkyl, or substituted or unsubstituted aryl; R14 is hydrogen, halogen, —CX14,13, —CHX14,12, —CH2X14,1, —CN, —SOn14R14A, —SOv14NR14BR14C, —NHNR14BR14C, —ONR14BR14C, —NHC(O)NHNR14BR14C, —NHC(O)NR14BR14C, —N(O)m14, —C(O)R14D, —C(O)OR14D, —C(O)NR14BR14C, —OR14A, —NR14BSO2R14A, —NR14BC(O)R14D, —NR14BC(O)OR14D, —NR14BOR14D, —OCX14,13, —OCHX14,12, substituted or unsubstituted alkyl, substituted or unsubstituted heteroalkyl, substituted or unsubstituted cycloalkyl, or substituted or unsubstituted aryl; R10A, R10B, R10C, R10D, R11A, R11B, R11C, R11D, R12A, R12B, R12C, R12D, R13A, R13B, R13C, R13D, R14A, R14B, R14C and R14D are independently hydrogen, halogen, —CF3, —CCl3, —CBr3, —CI3, —OH, —NH2, —COOH, —CONH2, —NO2, —SH, —SO3H, —SO4H, —SO2NH2, —NHNH2, —ONH2, —NHC(O)NHNH2, —NHC(O)NH2, —NHSO2H, —NHC(O)H, —NHC(O)—OH, —NHOH, —OCF3, —OCCl3, —OCBr3, —OCI3, —OCHF2, —OCHCl2, —OCHBr2, —OCHI2, substituted or unsubstituted alkyl, substituted or unsubstituted heteroalkyl, substituted or unsubstituted cycloalkyl, substituted or unsubstituted heterocycloalkyl, substituted or unsubstituted aryl, or substituted or unsubstituted heteroaryl; R10B, R10C, R11B, R11C, R12B, R12C, R13B, R13C, R14B and R14C substituents bonded to the same nitrogen atom may optionally be joined to form, together with the atoms to which they are attached, a substituted or unsubstituted heterocycloalkyl or substituted or unsubstituted heteroaryl; and X10,1, X11,1, X12,1, X13,1 and X14,1 are independently —Cl, —Br, —I or —F.


Embodiment 3. The compound of embodiment 2, wherein L1 is —CH2—.


Embodiment 4. The compound of embodiment 2 or 3, wherein R6, R7, R8 and R9 are hydrogen.


Embodiment 5. The compound of embodiment 2, 3, or 4, wherein R10, R11, R12, R13 and R14 are hydrogen.


Embodiment 6. The compound of embodiment 2, 3, 4 or 5, wherein at least two of R1, R2, R3, R4, R5 are hydrogen.


Embodiment 7. The compound of embodiment 6, wherein: R1 is hydrogen, halogen, —CN, —NO2, —NR1BR1C, NR1BC(O)R1D, —C(O)OR1D or substituted or unsubstituted alkyl; R2 is hydrogen, halogen, —CN, —NO2, —NR2BR2C, NR2BC(O)R2D, —C(O)OR2D or substituted or unsubstituted alkyl; R3 is hydrogen, halogen, —CN, —NO2, —NR3BR3C, NR3BC(O)R3D′, —C(O)OR3D or substituted or unsubstituted alkyl; R4 is hydrogen, halogen, —CN, —NO2, —NR4BR4C, NR4BC(O)R4D′, —C(O)OR4D or substituted or unsubstituted alkyl; R5 is hydrogen, halogen, —CN, —NO2, —NR5BR5C, NR5BC(O)R5D′, —C(O)OR5D or substituted or unsubstituted alkyl.


Embodiment 8. The compound of embodiment 7, wherein R1B, R2B, R3B, R4B, R5B, R1C, R2C, R3C, R4C, R5C, R1D, R2D, R3D, R4D and R5D are independently hydrogen or methyl.


Embodiment 9. The compound of embodiment 7 or 8, wherein: at least two of R1, R2, R4 and R5 are hydrogen; and R3 is —NO2.


Embodiment 10. The compound of embodiment 2, wherein R2 and R3 are joined to form, together with the atoms to which they are attached, 5-6 membered substituted or unsubstituted heterocycloalkyl or substituted or unsubstituted heteroaryl.


Embodiment 11. The compound of embodiment 10, wherein the compound is:




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Embodiment 12. The compound of embodiment 1, wherein -L1-R20 is unsubstituted C2-C4 alkyl.


Embodiment 13. The compound of embodiment 12, wherein L1 is —CH2—, and R20 is methyl, ethyl, or ethenyl.


Embodiment 14. The compound of embodiment 12 or 13, wherein R6, R7, R8 and R9 are hydrogen.


Embodiment 15. The compound of embodiment 12, 13 or 14, wherein R10, R11, R12, R13 and R14 are hydrogen.


Embodiment 16. The compound of embodiment 15, wherein: at least two of R1, R2, R4 and R5 are hydrogen; and R3 is —NO2.


Embodiment 17. The compound of embodiment 1, wherein: L1 is substituted or unsubstituted C1-C3 alkylene; and R20 is substituted or unsubstituted heteroaryl.


Embodiment 18. The compound of embodiment 17, wherein: L1 is —CH2—; and R20 is substituted or unsubstituted pyridyl, furanyl, or thiophenyl.


Embodiment 19. The compound of embodiment 17 or 18, wherein R6, R7, R8 and R9 are hydrogen.


Embodiment 20. The compound of embodiment 17, 18 or 19, wherein: at least two of R1, R2, R4 and R5 are hydrogen; and R3 is —NO2.


Embodiment 21, The compound of embodiment 17, wherein the compound is:




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Embodiment 22. The compound of embodiment 1, wherein L1-R20 is unsubstituted C2-C4 alkyl and R3 is NO2.


Embodiment 23. The compound of embodiment 1, wherein the compound is:




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Embodiment 24. A compound of Formula I:




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wherein L1 is —CH2—; R20 is




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unsubstituted pyridyl, unsubstituted furanyl or unsubstituted thiophenyl; or L1-R20 is




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R1, and R4 are hydrogen; R2 is hydrogen or halogen; R3 is —NO2, —CN or halogen; R5 is hydrogen, —NO2, or —NH2; or R2 and R3 are joined to form, together with the atoms to which they are attached,




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R6 is hydrogen or halogen; R7 is hydrogen; R8 is hydrogen or halogen; R9 is hydrogen, —CH3, or halogen; R10 and R11 are hydrogen or halogen; and R12, R13, and R14 are hydrogen, with proviso that when R3 is —NO2 and R6, R7, R8 and R9 are hydrogen, then R5 is not —NH2, or with proviso that when R3 is —NO2 and R5 is —NH2, then at least one of R6, R7, R8 and R9 is not hydrogen, with proviso that when R5 is —NH2 and R3 is —NO2, then R9 is —Cl.


Embodiment 25. The compound of embodiment 24, wherein: R20 is




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R3 is —NO2 or halogen; R5 is hydrogen or —NH2; and R6, R7, and R8 are hydrogen.


Embodiment 26. The compound of embodiment 24 wherein: R20 is




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R5 is hydrogen or —NH2; R3 is —NO2; R6, R7 and R8 are hydrogen; R9 is hydrogen or halogen; R10, R11, R12, R13, and R14 are hydrogen.


Embodiment 27. A pharmaceutical composition, comprising a pharmaceutically acceptable excipient, and a compound of Formula I:




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or a pharmaceutically acceptable salt thereof, wherein: L1 is a bond, —S—, —N(R15)—, —C(O)N(R15)—, or substituted or unsubstituted alkylene, and R20 is substituted or unsubstituted heterocycloalkyl, substituted or unsubstituted aryl or substituted or unsubstituted heteroaryl; or -L1-R20 is unsubstituted C2-C4 alkyl; n1, n2, n3, n4, n5, n6, n7, n8, and n9 are independently an integer from 0 to 4; m1, m2, m3, m4, m5, m6, m7, m8, m9, v1, v2, v3, v4, v5, v6, v7, v8, and v9 are independently 1 or 2; R1 is hydrogen, halogen, —CX1,13, —CHX1,12, —CH2X1,1, —CN, —SOn1R1A, —SOv1NR1BR1C, —NHNR1BR1C, —ONR1BR1C, —NHC(O)NHNR1BR1C, —NHC(O)NR1BR1C, —N(O)m1, —NR1BR1C, —C(O)R1D, —C(O)OR1D, —C(O)NR1BR1C, —OR1A, —NR1BSO2R1A, —NR1BC(O)R1D, —NR1BC(O)OR1D, —NR1BOR1D, —OCX1,13, —OCHX1,12, substituted or unsubstituted alkyl, substituted or unsubstituted heteroalkyl, substituted or unsubstituted cycloalkyl, substituted or unsubstituted heterocycloalkyl, substituted or unsubstituted aryl, or substituted or unsubstituted heteroaryl; R2 is hydrogen, halogen, —CX2,13, —CHX2,12, —CH2X2,1, —CN, —SOn2R2A, —SOv2NR2BR2C, —NHNR2BR2C, —ONR2BR2C, —NHC(O)NHNR2BR2C, —NHC(O)NR2BR2C, —N(O)m2, —NR2BR2C, —C(O)R2D, —C(O)OR2D, —C(O)NR2BR2C, —OR2A, —NR2BSO2R2A, —NR2BC(O)R2D, —NR2BC(O)OR2D, —NR2BOR2D, —OCX2,13, —OCHX2,12, substituted or unsubstituted alkyl, substituted or unsubstituted heteroalkyl, substituted or unsubstituted cycloalkyl, substituted or unsubstituted heterocycloalkyl, substituted or unsubstituted aryl, or substituted or unsubstituted heteroaryl; R3 is hydrogen, halogen, —CX3,13, —CHX3,12, —CH2X3,1, —CN, —SOn3R3A, —SOv3NR3BR3C, —NHNR3BR3C, —ONR3BR3C, —NHC(O)NHNR3BR3C, —NHC(O)NR3BR3C, —N(O)m3, —NR3BR3C, —C(O)R3D, —C(O)OR3D, —C(O)NR3BR3C, —OR3A, —NR3BSO2R3A, —NR3BC(O)R3D, —NR3BC(O)OR3D, —NR3BOR3D, —OCX3,13, —OCHX3,12, substituted or unsubstituted alkyl, substituted or unsubstituted heteroalkyl, substituted or unsubstituted cycloalkyl, substituted or unsubstituted heterocycloalkyl, substituted or unsubstituted aryl, or substituted or unsubstituted heteroaryl; R4 is hydrogen, halogen, —CX4,13, —CHX4,12, —CH2X4,1, —CN, —SOn4R4A, —SOv4NR4BR4C, —NHNR4BR4C, —ONR4BR4C, —NHC(O)NHNR4BR4C, —NHC(O)NR4BR4C, —N(O)m4, —NR4BR4C, —C(O)R4D, —C(O)OR4D, —C(O)NR4BR4C, —OR4A, —NR4BSO2R4A, —NR4BC(O)R4D, —NR4BC(O)OR4D, —NR4BOR4D, —OCX4 (3, —OCHX4,12, substituted or unsubstituted alkyl, substituted or unsubstituted heteroalkyl, substituted or unsubstituted cycloalkyl, substituted or unsubstituted heterocycloalkyl, substituted or unsubstituted aryl, or substituted or unsubstituted heteroaryl; R5 is hydrogen, halogen, —CX5,13, —CHX5,12, —CH2X5,1, —CN, —SOn5R5A, —SOv5NR5BR5C, —NHNR5BR5C, —ONR5BR5C, —NHC(O)NHNR5BR5C, —NHC(O)NR5BR5C, —N(O)m5, —NR5BR5C, —C(O)R5D, —C(O)OR5D, —C(O)NR5BR5C, —OR5A, —NR5BSO2R5A, —NR5BC(O)R5D, —NR5BC(O)OR5D, —NR5BOR5D, —OCX5,13, —OCHX5,12, substituted or unsubstituted alkyl, substituted or unsubstituted heteroalkyl, substituted or unsubstituted cycloalkyl, substituted or unsubstituted heterocycloalkyl, substituted or unsubstituted aryl, or substituted or unsubstituted heteroaryl; R1 and R2, R2 and R3, R3 and R4, or R1 and R5 are optionally joined to form, together with the atoms to which they are attached, substituted or unsubstituted cycloalkyl, substituted or unsubstituted heterocycloalkyl, substituted or unsubstituted aryl, or substituted or unsubstituted heteroaryl; R6 is hydrogen, halogen, —CX6,13, —CHX6,12, —CH2X6,1, —CN, —SOn6R6A, —SOv6NR6BR6C, —NHNR6BR6C, —ONR6BR6C, —NHC(O)NHNR6BR6C, —NHC(O)NR6BR6C, —N(O)m6, —NR6BR6C, —C(O)R6D, —C(O)OR6D, —C(O)NR6BR6C, —OR6A, —NR6BSO2R6A, —NR6BC(O)R6D, —NR6BC(O)OR6D, —NR6BOR6D, —OCX6,13, —OCHX6,12, substituted or unsubstituted alkyl, substituted or unsubstituted heteroalkyl, substituted or unsubstituted cycloalkyl, substituted or unsubstituted heterocycloalkyl, substituted or unsubstituted aryl, or substituted or unsubstituted heteroaryl; R7 is hydrogen, halogen, —CX7,13, —CHX7,12, —CH2X7,1, —CN, —SOn7R7A, —SOv7NR7BR7C, —NHNR7BR7C, —ONR7BR7C, —NHC(O)NHNR7BR7C, —NHC(O)NR7BR7C, —N(O)m7, —NR7BR7C, —C(O)R7D, —C(O)OR7D, —C(O)NR7BR7C, —OR7A, —NR7BSO2R7A, —NR7AC(O)R7C, —NR7BC(O)OR7D, —NR7BOR7D, —OCX7,13, —OCHX7,12, substituted or unsubstituted alkyl, substituted or unsubstituted heteroalkyl, substituted or unsubstituted cycloalkyl, substituted or unsubstituted heterocycloalkyl, substituted or unsubstituted aryl, or substituted or unsubstituted heteroaryl; R8 is hydrogen, halogen, —CX8,13, —CHX8,12, —CH2X8,1, —CN, —SOn8R8A, —SOv8NR8BR8C, —NHNR8BR8C, —ONR8BR8C, —NHC(O)NHNR8BR8C, —NHC(O)NR8BR8C, —N(O)m8, —NR8BR8C, —C(O)R8D, —C(O)OR8D, —C(O)NR8BR8C, —OR8A, —NR8BSO2R8A, —NR8BC(O)R8D, —NR8BC(O)OR8D, —NR8BOR8D, —OCX8,13, —OCHX8,12, substituted or unsubstituted alkyl, substituted or unsubstituted heteroalkyl, substituted or unsubstituted cycloalkyl, substituted or unsubstituted heterocycloalkyl, substituted or unsubstituted aryl, or substituted or unsubstituted heteroaryl; R9 is hydrogen, halogen, —CX9,13, —CHX9,12, —CH2X9,1, —CN, —SOn9R9A, —SOv9NR9BR9C, —NHNR9BR9C, —ONR9BR9C, —NHC(O)NHNR9BR9C, —NHC(O)NR9BR9C, —N(O)m9, —NR9BR9C, —C(O)R9D, —C(O)OR9D, —C(O)NR9BR9C, —OR9A, —NR9BSO2R9A, —NR9BC(O)R9D, —NR9BC(O)OR9D, —NR9BOR9D, —OCX9,13, —OCHX9,12, substituted or unsubstituted alkyl, substituted or unsubstituted heteroalkyl, substituted or unsubstituted cycloalkyl, substituted or unsubstituted heterocycloalkyl, substituted or unsubstituted aryl, or substituted or unsubstituted heteroaryl; R1A, R1B, R1C, R1D, R2A, R2B, R2C, R2D, R3A, R3B, R3C, R3D, R4A, R4B, R4C, R4D, R5A, R5B, R5C, R5D, R6A, R6B, R6C, R6D, R7A, R7B, R7C, R7D, R8A, R8B, R8C, R8D, R9A, R9B, R9C and R9D are independently hydrogen, halogen, —CF3, —CCl3, —CBr3, —CI3, —OH, —NH2, —COOH, —CONH2, —NO2, —SH, —SO3H, —SO4H, —SO2NH2, —NHNH2, —OMR, —NHC(O)NHNH2, —NHC(O)NH2, —NHSO2H, —NHC(O)H, —NHC(O)—OH, —NHOH, —OCF3, —OCCl3, —OCBr3, —OCR, —OCHF2, —OCHCl2, —OCHBr2, —OCHI2, substituted or unsubstituted alkyl, substituted or unsubstituted heteroalkyl, substituted or unsubstituted cycloalkyl, substituted or unsubstituted heterocycloalkyl, substituted or unsubstituted aryl, or substituted or unsubstituted heteroaryl; R1B, R1C, R2B, R2C, R3B, R3C, R4B, R4C, R5B, R5C, R6B, R6C, R7B, R7C, R8B, R8C, R9B and R9C substituents bonded to the same nitrogen atom may optionally be joined to form a substituted or unsubstituted heterocycloalkyl or substituted or unsubstituted heteroaryl; R15 is hydrogen, substituted or unsubstituted alkyl, substituted or unsubstituted heteroalkyl, substituted or unsubstituted cycloalkyl, substituted or unsubstituted heterocycloalkyl, substituted or unsubstituted aryl, or substituted or unsubstituted heteroaryl; and X1,1, X2,1, X3,1, X4,1, X5,1, X6,1, X7,1, X8,1, X9,1 are independently —Cl, —Br, —I or —F, with proviso that when L1-R20 is unsubstituted C2-C4 alkyl, then at least one of R1, R2, R3, R4 and R5 is NO2, with proviso that when L1 is —CH2— and R20 is substituted or unsubstituted heterocycloalkyl or substituted or unsubstituted heteroaryl, then at least one of R1, R2, R3, R4 and R5 is NO2, with proviso that when L1 is a bond or a —CH2— and R20 is unsubstituted phenyl, then at least one of R1, R2, R3, R4 and R5 is halogen, NO2, NH2, COOCH3, COOH, CN or substituted C1-C3 alkyl or R2 and R3 is joined to form, together with the atoms to which they are attached, substituted or unsubstituted heteroaryl.


Embodiment 28. The pharmaceutical composition of embodiment 27, wherein the compound is Formula IA:




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wherein: L1 is —S—, —NR15—, —C(O)NR15—, or substituted or unsubstituted alkylene; n10, n11, n12, n13, and n14 are independently an integer from 0 to 4; m10, m11, m12, m13, m14, v10, v11, v12, v13 and v14 are independently 1 or 2; R10 is hydrogen, halogen, —CX10,13, —CHX10,12, —CH2X10,1, —CN, —SOn10R10A, —SOv10NR10BR10C, —NHNR10BR10C, —ONR10BR10C, —NHC(O)NHNR10BR10C, —NHC(O)NR10BR10C, —N(O)m10, —C(O)R10D, —C(O)OR10D, —C(O)NR10BR10C, —OR10A, —NR10BSO2R10A, —NR10BC(O)R10D, —NR10BC(O)OR10D, —NR10BOR10D, —OCX10,13, —OCHX10,12, substituted or unsubstituted alkyl, substituted or unsubstituted heteroalkyl, substituted or unsubstituted cycloalkyl, or substituted or unsubstituted aryl; R11 is hydrogen, halogen, —CX11,13, —CHX11,12, —CH2X11,1, —CN, —SOn11R11A, —SOv11NR11BR11C, —NHNR11BR11C, —ONR11BR11C, —NHC(O)NHNR11BR11C, —NHC(O)NR11BR11C, —N(O)m11, —C(O)R11D, —C(O)OR11D, —C(O)NR11BR11C, —OR11A, —NR11BSO2R11A, —NR11BC(O)R11D, —NR11BC(O)OR11D, —NR11BOR11D, —OCX11,13, —OCHX11,12, substituted or unsubstituted alkyl, substituted or unsubstituted heteroalkyl, substituted or unsubstituted cycloalkyl, or substituted or unsubstituted aryl; R12 is hydrogen, halogen, —CX12,13, —CHX12,12, —CH2X12,1, —CN, —SOn12R12A, —SOv12NR12BR12C, —NHNR12BR12C, —ONR12BR12C, —NHC(O)NHNR12BR12C, —NHC(O)NR12BR12C, —N(O)m12, —C(O)R12D, —C(O)OR12D, —C(O)NR12BR12C, —OR12A, —NR12BSO2R12A, —NR12BC(O)R12D, —NR12BC(O)OR12D, —NR12BOR12D, —OCX12,13, —OCHX12,12, substituted or unsubstituted alkyl, substituted or unsubstituted heteroalkyl, substituted or unsubstituted cycloalkyl, or substituted or unsubstituted aryl; R13 is hydrogen, halogen, —CX13,13, —CHX13,12, —CH2X13,1, —CN, —SOn13R13A, —SOv13NR13BR13C, —NHNR13BR13C, —ONR13BR13C, —NHC(O)NHNR13BR13C, —NHC(O)NR13BR13C, —N(O)m13, —C(O)R13D, —C(O)OR13D, —C(O)NR13BR13C, —OR13A, —NR13BSO2R13A, —NR13BC(O)R13D, —NR13BC(O)OR13D, —NR13BOR13D, —OCX13,13, —OCHX13,12, substituted or unsubstituted alkyl, substituted or unsubstituted heteroalkyl, substituted or unsubstituted cycloalkyl, or substituted or unsubstituted aryl; R14 is hydrogen, halogen, —CX14,13, —CHX14,12, —CH2X14,1, —CN, —SOn14R14A, —SOv14NR14BR14C, —NHNR14BR14C, —ONR14BR14C, —NHC(O)NHNR14BR14C, —NHC(O)NR14BR14C, —N(O)m14, —C(O)R14D, —C(O)OR14D, —C(O)NR14BR14C, —OR14A, —NR14BSO2R14A, —NR14BC(O)R14D, —NR14BC(O)OR14D, —NR14BOR14D, —OCX14,13, —OCHX14,12, substituted or unsubstituted alkyl, substituted or unsubstituted heteroalkyl, substituted or unsubstituted cycloalkyl, or substituted or unsubstituted aryl; R10A, R10B, R10C, R10D, R11A, R11B, R11C, R11D, R12A, R12B, R12C, R12D, R13A, R13B, R13C, R13D, R14A, R14B, R14C and R14D are independently hydrogen, halogen, —CF3, —CCl3, —CBr3, —CI3, —OH, —NH2, —COOH, —CONH2, —NO2, —SH, —SO3H, —SO4H, —SO2NH2, —NHNH2, —ONH2, —NHC(O)NHNH2, —NHC(O)NH2, —NHSO2H, —NHC(O)H, —NHC(O)—OH, —NHOH, —OCF3, —OCCl3, —OCBr3, —OCI3, —OCHF2, —OCHCl2, —OCHBr2, —OCHI2, substituted or unsubstituted alkyl, substituted or unsubstituted heteroalkyl, substituted or unsubstituted cycloalkyl, substituted or unsubstituted heterocycloalkyl, substituted or unsubstituted aryl, or substituted or unsubstituted heteroaryl; R10B, R10C, R11B, R11C, R12B, R12C, R13B, R13C, R14B and R14C substituents bonded to the same nitrogen atom may optionally be joined to form a substituted or unsubstituted heterocycloalkyl or substituted or unsubstituted heteroaryl; and X10,1, X11,1, X12,1, X13,1 and X14,1 are independently —Cl, —Br, —I or —F.


Embodiment 29. The pharmaceutical composition of embodiment 28, wherein L1 is —CH2—Embodiment 30. The pharmaceutical composition of embodiment 28 or 29, wherein R6, R7, R8 and R9 are hydrogen.


Embodiment 31. The pharmaceutical composition of embodiment 28, 29 or 30, wherein R10, R11, R12, R13 and R14 are hydrogen.


Embodiment 32. The pharmaceutical composition of embodiment 28, 29, 30 or 31, wherein at least two of R1, R2, R3, R4, R5 are hydrogen.


Embodiment 33. The pharmaceutical composition of embodiment 32, wherein: R1 is hydrogen, halogen, —CN, —NO2, —NR1BR1C, NR1BC(O)R1D, —C(O)OR1D or substituted or unsubstituted alkyl; R2 is hydrogen, halogen, —CN, —NO2, —NR2BR2C, NR2BC(O)R2D, —C(O)OR2D or substituted or unsubstituted alkyl; R3 is hydrogen, halogen, —CN, —NO2, —NR3BR3C, NR3BC(O)R3D′, —C(O)OR3D or substituted or unsubstituted alkyl; R4 is hydrogen, halogen, —CN, —NO2, —NR4BR4C, NR4BC(O)R4D′, —C(O)OR4D or substituted or unsubstituted alkyl; and R5 is hydrogen, halogen, —CN, —NO2, —NR5BR5C, NR5BC(O)R5D′, —C(O)OR5D or substituted or unsubstituted alkyl.


Embodiment 34. The pharmaceutical composition of embodiment 33, wherein R1B, R2B, R3B, R4B, R5B, R1C, R2C, R3C, R4C, R5C, R1D, R2D, R3D, R4D and R5D are independently hydrogen or methyl.


Embodiment 35. The pharmaceutical composition of embodiment 33 or 34, wherein: at least two of R1, R2, R4 and R5 are hydrogen; and R3 is —NO2.


Embodiment 36. The pharmaceutical composition of embodiment 28, wherein R2 and R3 are joined to form, together with the atoms to which they are attached, 5-6 membered substituted or unsubstituted heterocycloalkyl or substituted or unsubstituted heteroaryl.


Embodiment 37. The pharmaceutical composition of embodiment 36, wherein the compound is




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Embodiment 38. The pharmaceutical composition of embodiment 27, wherein -L1-R20 is unsubstituted C2-C4 alkyl.


Embodiment 39. The pharmaceutical composition of embodiment 38, wherein L1 is —CH2— and R20 is methyl, ethyl, or ethenyl.


Embodiment 40. The pharmaceutical composition of embodiment 38 or 39, wherein R6, R7, R8 and R9 are hydrogen.


Embodiment 41. The pharmaceutical composition of embodiment 38, 39 or 40, wherein R10, R11, R12, R13 and R14 are hydrogen.


Embodiment 42. The pharmaceutical composition of embodiment 38, 39, 40 or 41, wherein: at least two of R1, R2, R4 and R5 are hydrogen; and R3 is —NO2.


Embodiment 43. The pharmaceutical composition of embodiment 27, wherein: L1 is substituted or unsubstituted C1-C3 alkylene; and R20 is substituted or unsubstituted heteroaryl.


Embodiment 44. The pharmaceutical composition of embodiment 43, wherein: L1 is —CH2—; and R20 is substituted or unsubstituted heteroaryl.


Embodiment 45. The pharmaceutical composition of embodiment 43 or 44, wherein R6, R7, R8 and R9 are hydrogen.


Embodiment 46. The pharmaceutical composition of embodiment 43, 44 or 45, wherein: at least two of R1, R2, R4 and R5 are hydrogen; and R3 is —NO2.


Embodiment 47, The pharmaceutical composition of embodiment 46, wherein the compound is:




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Embodiment 48. The pharmaceutical composition of embodiment 27, wherein L1-R20 is unsubstituted C2-C4 alkyl and R3 is NO2.


Embodiment 49. The pharmaceutical composition of embodiment 27, wherein the compound is:




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Embodiment 50. A pharmaceutical composition, comprising a pharmaceutically acceptable excipient, and a compound of Formula I:


or a pharmaceutically acceptable salt thereof, wherein: L1 is —CH2—; R20 is




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or a pharmaceutically acceptable salt thereof, wherein: L1 is —CH2—; R20 is




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-unsubstituted pyridyl, unsubstituted furanyl or unsubstituted thiophenyl; or L1-R20 is




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R1, and R4 are hydrogen; R2 is hydrogen or halogen; R3 is —NO2, —CN or halogen; R5 is hydrogen, —NO2, or —NH2; or R2 and R3 are joined to form, together with the atoms to which they are attached,




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R6 is hydrogen or halogen; R7 is hydrogen; R8 is hydrogen or halogen; R9 is hydrogen, —CH3, or halogen; R10 and R11 are hydrogen or halogen; and R12, R13, and R14 are hydrogen, with proviso that when R3 is —NO2 and R6, R7, R8 and R9 are hydrogen, then R5 is not —NH2, or with proviso that when R3 is —NO2 and R5 is —NH2, then at least one of R6, R7, R8 and R9 is not hydrogen, with proviso that when R5 is —NH2 and R3 is —NO2, then R9 is —Cl.


Embodiment 51. The pharmaceutical composition of embodiment 53, wherein: R20 is




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R3 is —NO2 or halogen; R5 is hydrogen or —NH2; and R6, R7, and R8 are hydrogen.


Embodiment 52. The pharmaceutical composition of embodiment 53, wherein: R20 is




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R5 is hydrogen or —NH2; R3 is —NO2; R6, R7 and R8 are hydrogen; R9 is hydrogen or halogen; R10, R11, R12, R13, and R14 are hydrogen.


Embodiment 53. A method of treating constipation in a subject in need thereof, comprising administering to the subject an effective amount of a compound of Formula I:




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wherein: L1 is a bond, —O—, —S—, —N(R15)—, —C(O)N(R15)—, —C(O)—, substituted or unsubstituted alkylene or substituted or unsubstituted heteroalkylene, and R20 is substituted or unsubstituted cycloalkyl, substituted or unsubstituted heterocycloalkyl, substituted or unsubstituted aryl or substituted or unsubstituted heteroaryl; or -L1-R20 is substituted or unsubstituted alkyl; n1, n2, n3, n4, n5, n6, n7, n8, and n9 are independently an integer from 0 to 4; m1, m2, m3, m4, m5, m6, m7, m8, m9, v1, v2, v3, v4, v5, v6, v7, v8, and v9 are independently 1 or 2; R1 is hydrogen, halogen, —CX1,13, —CHX1,12, —CH2X1,1, —CN, —SOn1R1A, —SOv1NR1BR1C, —NHNR1BR1C, —ONR1BR1C, —NHC(O)NHNR1BR1C, —NHC(O)NR1BR1C, —N(O)m1, —NR1BR1C, —C(O)R1D, —C(O)OR1D, —C(O)NR1BR1C, —OR1A, —NR1BSO2R1A, —NR1BC(O)R1D, —NR1BC(O)OR1D, —NR1BOR1D, —OCX1,13, —OCHX1,12, substituted or unsubstituted alkyl, substituted or unsubstituted heteroalkyl, substituted or unsubstituted cycloalkyl, substituted or unsubstituted heterocycloalkyl, substituted or unsubstituted aryl, or substituted or unsubstituted heteroaryl; R2 is hydrogen, halogen, —CX2,13, —CHX2,12, —CH2X2,1, —CN, —SOn1R2A, —SOv1NR2BR2C, —NHNR2BR2C, —ONR2BR2C, —NHC(O)NHNR2BR2C, —NHC(O)NR2BR2C, —N(O)m1, —NR2BR2C, —C(O)R2D, —C(O)OR2D, —C(O)NR2BR2C, —OR2A, —NR2BSO2R2A, —NR2BC(O)R2D, —NR2BC(O)OR2D, —NR2BOR2D, —OCX2,13, —OCHX2,12, substituted or unsubstituted alkyl, substituted or unsubstituted heteroalkyl, substituted or unsubstituted cycloalkyl, substituted or unsubstituted heterocycloalkyl, substituted or unsubstituted aryl, or substituted or unsubstituted heteroaryl; R3 is hydrogen, halogen, —CX3,13, —CHX3,12, —CH2X3,1, —CN, —SOn1R3A, —SOv1NR3BR3C, —NHNR3BR3C, —ONR3BR3C, —NHC(O)NHNR3BR3C, —NHC(O)NR3BR3C, —N(O)m1, —NR3BR3C, —C(O)R3D, —C(O)OR3D, —C(O)NR3BR3C, —OR3A, —NR3BSO2R3A, —NR3BC(O)R3D, —NR3BC(O)OR3D, —NR3BOR3D, —OCX3,13, —OCHX3,12, substituted or unsubstituted alkyl, substituted or unsubstituted heteroalkyl, substituted or unsubstituted cycloalkyl, substituted or unsubstituted heterocycloalkyl, substituted or unsubstituted aryl, or substituted or unsubstituted heteroaryl; R4 is hydrogen, halogen, —CX4,13, —CHX4,12, —CH2X4,1, —CN, —SOn1R4A, —SOv1NR4BR4C, —NHNR4BR4C, —ONR4BR4C, —NHC(O)NHNR4BR4C, —NHC(O)NR4BR4C, —N(O)m1, —NR4BR4C, —C(O)R4D, —C(O)OR4D, —C(O)NR4BR4C, —OR4A, —NR4BSO2R4A, —NR4BC(O)R4D, —NR4BC(O)OR4D, —NR4BOR4D, —OCX4,13, —OCHX4,12, substituted or unsubstituted alkyl, substituted or unsubstituted heteroalkyl, substituted or unsubstituted cycloalkyl, substituted or unsubstituted heterocycloalkyl, substituted or unsubstituted aryl, or substituted or unsubstituted heteroaryl; R5 is hydrogen, halogen, —CX5,13, —CHX5,12, —CH2X5,1, —CN, —SOn1R5A, —SOv1NR5BR5C, —NHNR5BR5C, —ONR5BR5C, —NHC(O)NHNR5BR5C, —NHC(O)NR5BR5C, —N(O)m1, —NR5BR5C, —C(O)R5D, —C(O)OR5D, —C(O)NR5BR5C, —OR5A, —NR5BSO2R5A, —NR5BC(O)R5D, —NR5BC(O)OR5D, —NR5BOR5D, —OCX5,13, —OCHX5,12, substituted or unsubstituted alkyl, substituted or unsubstituted heteroalkyl, substituted or unsubstituted cycloalkyl, substituted or unsubstituted heterocycloalkyl, substituted or unsubstituted aryl, or substituted or unsubstituted heteroaryl; R1 and R2, R2 and R3, R3 and R4, or R1 and R5 are optionally joined to form substituted or unsubstituted cycloalkyl, substituted or unsubstituted heterocycloalkyl, substituted or unsubstituted aryl, or substituted or unsubstituted heteroaryl; R6 is hydrogen, halogen, —CX6,13, —CHX6,12, —CH2X6,1, —CN, —SOn1R6A, —SOv1NR6BR6C, —NHNR6BR6C, —ONR6BR6C, —NHC(O)NHNR6BR6C, —NHC(O)NR6BR6C, —N(O)m1, —NR6BR6C, —C(O)R6D, —C(O)OR6D, —C(O)NR6BR6C, —OR6A, —NR6BSO2R6A, —NR6BC(O)R6D, —NR6BC(O)OR6D, —NR6BOR6D, —OCX6,13, —OCHX6,12, substituted or unsubstituted alkyl, substituted or unsubstituted heteroalkyl, substituted or unsubstituted cycloalkyl, substituted or unsubstituted heterocycloalkyl, substituted or unsubstituted aryl, or substituted or unsubstituted heteroaryl; R7 is hydrogen, halogen, —CX7,13, —CHX7,12, —CH2X7,1, —CN, —SOn1R7A, —SOv1NR7BR7C, —NHNR7BR7C, —ONR7BR7C, —NHC(O)NHNR7BR7C, —NHC(O)NR7BR7C, —N(O)m1, —NR7BR7C, —C(O)R7D, —C(O)OR7D, —C(O)NR7BR7C, —OR7A, —NR7BSO2R7A, —NR7AC(O)R7C, —NR7BC(O)OR7D, —NR7BOR7D, —OCX7,13, —OCHX7,12, substituted or unsubstituted alkyl, substituted or unsubstituted heteroalkyl, substituted or unsubstituted cycloalkyl, substituted or unsubstituted heterocycloalkyl, substituted or unsubstituted aryl, or substituted or unsubstituted heteroaryl; R8 is hydrogen, halogen, —CX8,13, —CHX8,12, —CH2X8,1, —CN, —SOn1R8A, —SOv1NR8BR8C, —NHNR8BR8C, —ONR8BR8C, —NHC(O)NHNR8BR8C, —NHC(O)NR8BR8C, —N(O)m1, —NR8BR8C, —C(O)R8D, —C(O)OR8D, —C(O)NR8BR8C, —OR8A, —NR8BSO2R8A, —NR8BC(O)R8D, —NR8BC(O)OR8D, —NR8BOR8D, —OCX8,13, —OCHX8,12, substituted or unsubstituted alkyl, substituted or unsubstituted heteroalkyl, substituted or unsubstituted cycloalkyl, substituted or unsubstituted heterocycloalkyl, substituted or unsubstituted aryl, or substituted or unsubstituted heteroaryl; R9 is hydrogen, halogen, —CX9,13, —CHX9,12, —CH2X9,1, —CN, —SOn1R9A, —SOv1NR9BR9C, —NHNR9BR9C, —ONR9BR9C, —NHC(O)NHNR9BR9C, —NHC(O)NR9BR9C, —N(O)m1, —NR9BR9C, —C(O)R9D, —C(O)OR9D, —C(O)NR9BR9C, —OR9A, —NR9BSO2R9A, —NR9BC(O)R9D, —NR9BC(O)OR9D, —NR9BOR9D, —OCX9,13, —OCHX9,12, substituted or unsubstituted alkyl, substituted or unsubstituted heteroalkyl, substituted or unsubstituted cycloalkyl, substituted or unsubstituted heterocycloalkyl, substituted or unsubstituted aryl, or substituted or unsubstituted heteroaryl; R15 is hydrogen, substituted or unsubstituted alkyl, substituted or unsubstituted heteroalkyl, substituted or unsubstituted cycloalkyl, substituted or unsubstituted heterocycloalkyl, substituted or unsubstituted aryl, or substituted or unsubstituted heteroaryl; R1A, R1B, R1C, R1D, R2A, R2B, R2C, R2D, R3A, R3B, R3C, R3D, R4A, R4B, R4C, R4D, R5A, R5B, R5C, R5D, R6A, R6B, R6C, R6D, R7A, R7B, R7C, R7D, R8A, R8B, R8C, R8D, R9A, R9B, R9C and R9D are independently hydrogen, halogen, —CF3, —CCl3, —CBr3, —CI3, —OH, —NH2, —COOH, —CONH2, —NO2, —SH, —SO3H, —SO4H, —SO2NH2, —NHNH2, —ONH2, —NHC(O)NHNH2, —NHC(O)NH2, —NHSO2H, —NHC(O)H, —NHC(O)—OH, —NHOH, —OCF3, —OCCl3, —OCBr3, —OCI3, —OCHF2, —OCHCl2, —OCHBr2, —OCHI2, substituted or unsubstituted alkyl, substituted or unsubstituted heteroalkyl, substituted or unsubstituted cycloalkyl, substituted or unsubstituted heterocycloalkyl, substituted or unsubstituted aryl, or substituted or unsubstituted heteroaryl; R1B, R1C, R2B, R2C, R3B, R3C, R4B, R4C, R5B, R5C, R6B, R6C, R7B, R7C, R8B, R8C, R9B and R9C substituents bonded to the same nitrogen atom may optionally be joined to form a substituted or unsubstituted heterocycloalkyl or substituted or unsubstituted heteroaryl; and X1,1, X2,1, X3,1, X4,1, X5,1, X6,1, X7,1, X8,1 and X9,1 are independently —Cl, —Br, —I or —F.


Embodiment 54. The method of embodiment 53, further comprising administering to the subject .an anti-constipation agent.


Embodiment 55. The method of embodiment 53, wherein the constipation is opioid-induced constipation, chronic idiopathic constipation or irritable bowel syndrome with constipation predominance.


Embodiment 56. A method of treating a dry eye disorder in a subject in need thereof, comprising administering to the subject an effective amount a compound of Formula T




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wherein: L1 is a bond, —O—, —S—, —N(R15)—, —C(O)N(R15)—, —C(O)—, substituted or unsubstituted alkylene or substituted or unsubstituted heteroalkylene, and R20 is substituted or unsubstituted cycloalkyl, substituted or unsubstituted heterocycloalkyl, substituted or unsubstituted aryl or substituted or unsubstituted heteroaryl; or -L1-R20 is substituted or unsubstituted alkyl; n1, n2, n3, n4, n5, n6, n7, n8, and n9 are independently an integer from 0 to 4; m1, m2, m3, m4, m5, m6, m7, m8, m9, v1, v2, v3, v4, v5, v6, v7, v8, and v9 are independently 1 or 2; R1 is hydrogen, halogen, —CX1,13, —CHX1,12, —CH2X1,1, —CN, —SOn1R1A, —SOv1NR1BR1C, —NHNR1BR1C, —ONR1BR1C, —NHC(O)NHNR1BR1C, —NHC(O)NR1BR1C, —N(O)m1, —NR1BR1C, —C(O)R1D, —C(O)OR1D, —C(O)NR1BR1C, —OR1A, —NR1BSO2R1A, —NR1BC(O)R1D, —NR1BC(O)OR1D, —NR1BOR1D, —OCX1,13, —OCHX1,12, substituted or unsubstituted alkyl, substituted or unsubstituted heteroalkyl, substituted or unsubstituted cycloalkyl, substituted or unsubstituted heterocycloalkyl, substituted or unsubstituted aryl, or substituted or unsubstituted heteroaryl; R2 is hydrogen, halogen, —CX2,13, —CHX2,12, —CH2X2,1, —CN, —SOn1R2A, —SOv1NR2BR2C, —NHNR2BR2C, —ONR2BR2C, —NHC(O)NHNR2BR2C, —NHC(O)NR2BR2C, —N(O)m1, —NR2BR2C, —C(O)R2D, —C(O)OR2D, —C(O)NR2BR2C, —OR2A, —NR2BSO2R2A, —NR2BC(O)R2D, —NR2BC(O)OR2D, —NR2BOR2D, —OCX2,13, —OCHX2,12, substituted or unsubstituted alkyl, substituted or unsubstituted heteroalkyl, substituted or unsubstituted cycloalkyl, substituted or unsubstituted heterocycloalkyl, substituted or unsubstituted aryl, or substituted or unsubstituted heteroaryl; R3 is hydrogen, halogen, —CX3,13, —CHX3,12, —CH2X3,1, —CN, —SOn1R3A, —SOv1NR3BR3C, —NHNR3BR3C, —ONR3BR3C, —NHC(O)NHNR3BR3C, —NHC(O)NR3BR3C, —N(O)m1, —NR3BR3C, —C(O)R3D, —C(O)OR3D, —C(O)NR3BR3C, —OR3A, —NR3BSO2R3A, —NR3BC(O)R3D, —NR3BC(O)OR3D, —NR3BOR3D, —OCX3,13, —OCHX3,12, substituted or unsubstituted alkyl, substituted or unsubstituted heteroalkyl, substituted or unsubstituted cycloalkyl, substituted or unsubstituted heterocycloalkyl, substituted or unsubstituted aryl, or substituted or unsubstituted heteroaryl; R4 is hydrogen, halogen, —CX4,13, —CHX4,12, —CH2X4,1, —CN, —SOn1R4A, —SOv1NR4BR4C, —NHNR4BR4C, —ONR4BR4C, —NHC(O)NHNR4BR4C, —NHC(O)NR4BR4C, —N(O)m1, —NR4BR4C, —C(O)R4D, —C(O)OR4D, —C(O)NR4BR4C, —OR4A, —NR4BSO2R4A, —NR4BC(O)R4D, —NR4BC(O)OR4D, —NR4BOR4D, —OCX4,13, —OCHX4,12, substituted or unsubstituted alkyl, substituted or unsubstituted heteroalkyl, substituted or unsubstituted cycloalkyl, substituted or unsubstituted heterocycloalkyl, substituted or unsubstituted aryl, or substituted or unsubstituted heteroaryl; R5 is hydrogen, halogen, —CX5,13, —CHX5,12, —CH2X5,1, —CN, —SOn1R5A, —SOv1NR5BR5C, —NHNR5BR5C, —ONR5BR5C, —NHC(O)NHNR5BR5C, —NHC(O)NR5BR5C, —N(O)m1, —NR5BR5C, —C(O)R5D, —C(O)OR5D, —C(O)NR5BR5C, —OR5A, —NR5BSO2R5A, —NR5BC(O)R5D, —NR5BC(O)OR5D, —NR5BOR5D, —OCX5,13, —OCHX5,12, substituted or unsubstituted alkyl, substituted or unsubstituted heteroalkyl, substituted or unsubstituted cycloalkyl, substituted or unsubstituted heterocycloalkyl, substituted or unsubstituted aryl, or substituted or unsubstituted heteroaryl; R1 and R2, R2 and R3, R3 and R4, or R1 and R5 are optionally joined to form substituted or unsubstituted cycloalkyl, substituted or unsubstituted heterocycloalkyl, substituted or unsubstituted aryl, or substituted or unsubstituted heteroaryl; R6 is hydrogen, halogen, —CX6,13, —CHX6,12, —CH2X6,1, —CN, —SOn1R6A, —SOv1NR6BR6C, —NHNR6BR6C, —ONR6BR6C, —NHC(O)NHNR6BR6C, —NHC(O)NR6BR6C, —N(O)m1, —NR6BR6C, —C(O)R6D, —C(O)OR6D, —C(O)NR6BR6C, —OR6A, —NR6BSO2R6A, —NR6BC(O)R6D, —NR6BC(O)OR6D, —NR6BOR6D, —OCX6,13, —OCHX6,12, substituted or unsubstituted alkyl, substituted or unsubstituted heteroalkyl, substituted or unsubstituted cycloalkyl, substituted or unsubstituted heterocycloalkyl, substituted or unsubstituted aryl, or substituted or unsubstituted heteroaryl; R7 is hydrogen, halogen, —CX7,13, —CHX7,12, —CH2X7,1, —CN, —SOn1R7A, —SOv1NR7BR7C, —NHNR7BR7C, —ONR7BR7C, —NHC(O)NHNR7BR7C, —NHC(O)NR7BR7C, —N(O)m1, —NR7BR7C, —C(O)R7D, —C(O)OR7D, —C(O)NR7BR7C, —OR7A, —NR7BSO2R7A, —NR7AC(O)R7C, —NR7BC(O)OR7D, —NR7BOR7D, —OCX7,13, —OCHX7,12, substituted or unsubstituted alkyl, substituted or unsubstituted heteroalkyl, substituted or unsubstituted cycloalkyl, substituted or unsubstituted heterocycloalkyl, substituted or unsubstituted aryl, or substituted or unsubstituted heteroaryl; R8 is hydrogen, halogen, —CX8,13, —CHX8,12, —CH2X8,1, —CN, —SOn1R8A, —SOv1NR8BR8C, —NHNR8BR8C, —ONR8BR8C, —NHC(O)NHNR8BR8C, —NHC(O)NR8BR8C, —N(O)m1, —NR8BR8C, —C(O)R8D, —C(O)OR8D, —C(O)NR8BR8C, —OR8A, —NR8BSO2R8A, —NR8BC(O)R8D, —NR8BC(O)OR8D, —NR8BOR8D, —OCX8,13, —OCHX8,12, substituted or unsubstituted alkyl, substituted or unsubstituted heteroalkyl, substituted or unsubstituted cycloalkyl, substituted or unsubstituted heterocycloalkyl, substituted or unsubstituted aryl, or substituted or unsubstituted heteroaryl; R9 is hydrogen, halogen, —CX9,13, —CHX9,12, —CH2X9,1, —CN, —SOn1R9A, —SOv1NR9BR9C, —NHNR9BR9C, —ONR9BR9C, —NHC(O)NHNR9BR9C, —NHC(O)NR9BR9C, —N(O)m1, —NR9BR9C, —C(O)R9D, —C(O)OR9D, —C(O)NR9BR9C, —OR9A, —NR9BSO2R9A, —NR9BC(O)R9D, —NR9BC(O)OR9D, —NR9BOR9D, —OCX9,13, —OCHX9,12, substituted or unsubstituted alkyl, substituted or unsubstituted heteroalkyl, substituted or unsubstituted cycloalkyl, substituted or unsubstituted heterocycloalkyl, substituted or unsubstituted aryl, or substituted or unsubstituted heteroaryl; R15 is hydrogen, substituted or unsubstituted alkyl, substituted or unsubstituted heteroalkyl, substituted or unsubstituted cycloalkyl, substituted or unsubstituted heterocycloalkyl, substituted or unsubstituted aryl, or substituted or unsubstituted heteroaryl; R1A, R1B, R1C, R1D, R2A, R2B, R2C, R2D, R3A, R3B, R3C, R3D, R4A, R4B, R4C, R4D, R5A, R5B, R5C, R5D, R6A, R6B, R6C, R6D, R7A, R7B, R7C, R7D, R8A, R8B, R8C, R8D, R9A, R9B, R9C and R9D are independently hydrogen, halogen, —CF3, —CCl3, —CBr3, —CI3, —OH, —NH2, —COOH, —CONH2, —NO2, —SH, —SO3H, —SO4H, —SO2NH2, —NHNH2, —ONH2, —NHC(O)NHNH2, —NHC(O)NH2, —NHSO2H, —NHC(O)H, —NHC(O)—OH, —NHOH, —OCF3, —OCCl3, —OCBr3, —OCI3, —OCHF2, —OCHCl2, —OCHBr2, —OCHI2, substituted or unsubstituted alkyl, substituted or unsubstituted heteroalkyl, substituted or unsubstituted cycloalkyl, substituted or unsubstituted heterocycloalkyl, substituted or un substituted aryl, or substituted or unsubstituted heteroaryl; R1B, R1C, R2B, R2C, R3B, R3C, R4B, R4C, R5B, R5C, R6B, R6C, R7B, R7C, R8B, R8C, R9B and R9C substituents bonded to the same nitrogen atom may optionally be joined to form a substituted or unsubstituted heterocycloalkyl or substituted or unsubstituted heteroaryl; and X1,1, X2,1, X3,1, X4,1, X5,1, X6,1, X7,1, X8,1 and X9,1 are independently —Cl, —Br, —I or —F.


Embodiment 57. A method of increasing lacrimation in a subject in need thereof, comprising administering to the subject an effective amount of a compound of Formula I:




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wherein: L1 is a bond, —O—, —S—, —N(R15)—, —C(O)N(R15)—, —C(O)—, substituted or unsubstituted alkylene or substituted or unsubstituted heteroalkylene, and R20 is substituted or unsubstituted cycloalkyl, substituted or unsubstituted heterocycloalkyl, substituted or unsubstituted aryl or substituted or unsubstituted heteroaryl; or -L1-R20 is substituted or unsubstituted alkyl; n1, n2, n3, n4, n5, n6, n7, n8, and n9 are independently an integer from 0 to 4; m1, m2, m3, m4, m5, m6, m7, m8, m9, v1, v2, v3, v4, v5, v6, v7, v8, and v9 are independently 1 or 2; R1 is hydrogen, halogen, —CX1,13, —CHX1,12, —CH2X1,1, —CN, —SOn1R1A, —SOv1NR1BR1C, —NHNR1BR1C, —ONR1BR1C, —NHC(O)NHNR1BR1C, —NHC(O)NR1BR1C, —N(O)m1, —NR1BR1C, —C(O)R1D, —C(O)OR1D, —C(O)NR1BR1C, —OR1A, —NR1BSO2R1A, —NR1BC(O)R1D, —NR1BC(O)OR1D, —NR1BOR1D, —OCX1,13, —OCHX1,12, substituted or unsubstituted alkyl, substituted or unsubstituted heteroalkyl, substituted or unsubstituted cycloalkyl, substituted or unsubstituted heterocycloalkyl, substituted or unsubstituted aryl, or substituted or unsubstituted heteroaryl; R2 is hydrogen, halogen, —CX2,13, —CHX2,12, —CH2X2,1, —CN, —SOn1R2A, —SOv1NR2BR2C, —NHNR2BR2C, —ONR2BR2C, —NHC(O)NHNR2BR2C, —NHC(O)NR2BR2C, —N(O)m1, —NR2BR2C, —C(O)R2D, —C(O)OR2D, —C(O)NR2BR2C, —OR2A, —NR2BSO2R2A, —NR2BC(O)R2D, —NR2BC(O)OR2D, —NR2BOR2D, —OCX2,13, —OCHX2,12, substituted or unsubstituted alkyl, substituted or unsubstituted heteroalkyl, substituted or unsubstituted cycloalkyl, substituted or unsubstituted heterocycloalkyl, substituted or unsubstituted aryl, or substituted or unsubstituted heteroaryl; R3 is hydrogen, halogen, —CX3,13, —CHX3,12, —CH2X3,1, —CN, —SOn1R3A, —SOv1NR3BR3C, —NHNR3BR3C, —ONR3BR3C, —NHC(O)NHNR3BR3C, —NHC(O)NR3BR3C, —N(O)m1, —NR3BR3C, —C(O)R3D, —C(O)OR3D, —C(O)NR3BR3C, —OR3A, —NR3BSO2R3A, —NR3BC(O)R3D, —NR3BC(O)OR3D, —NR3BOR3D, —OCX3,12, —OCHX3,12, substituted or unsubstituted alkyl, substituted or unsubstituted heteroalkyl, substituted or unsubstituted cycloalkyl, substituted or unsubstituted heterocycloalkyl, substituted or unsubstituted aryl, or substituted or unsubstituted heteroaryl; R4 is hydrogen, halogen, —CX4,13, —CHX4,12, —CH2X4,1, —CN, —SOn1R4A, —SOv1NR4BR4C, —NHNR4BR4C, —ONR4BR4C, —NHC(O)NHNR4BR4C, —NHC(O)NR4BR4C, —N(O)m1, —NR4BR4C, —C(O)R4D, —C(O)OR4D, —C(O)NR4BR4C, —OR4A, —NR4BSO2R4A, —NR4BC(O)R4D, —NR4BC(O)OR4D, —NR4BOR4D, —OCX4,12, —OCHX4,12, substituted or unsubstituted alkyl, substituted or unsubstituted heteroalkyl, substituted or unsubstituted cycloalkyl, substituted or unsubstituted heterocycloalkyl, substituted or unsubstituted aryl, or substituted or unsubstituted heteroaryl; R5 is hydrogen, halogen, —CX5,13, —CHX5,12, —CH2X5,1, —CN, —SOn1R5A, —SOv1NR5BR5C, —NHNR5BR5C, —ONR5BR5C, —NHC(O)NHNR5BR5C, —NHC(O)NR5BR5C, —N(O)m1, —NR5BR5C, —C(O)R5D, —C(O)OR5D, —C(O)NR5BR5C, —OR5A, —NR5BSO2R5A, —NR5BC(O)R5D, —NR5BC(O)OR5D, —NR5BOR5D, —OCX5,13, —OCHX5,12, substituted or unsubstituted alkyl, substituted or unsubstituted heteroalkyl, substituted or unsubstituted cycloalkyl, substituted or unsubstituted heterocycloalkyl, substituted or unsubstituted aryl, or substituted or unsubstituted heteroaryl; R1 and R2, R2 and R3, R3 and R4, or R1 and R5 are optionally joined to form substituted or unsubstituted cycloalkyl, substituted or unsubstituted heterocycloalkyl, substituted or unsubstituted aryl, or substituted or unsubstituted heteroaryl; R6 is hydrogen, halogen, —CX6,13, —CHX6,12, —CH2X6,1, —CN, —SOn1R6A, —SOv1NR6BR6C, —NHNR6BR6C, —ONR6BR6C, —NHC(O)NHNR6BR6C, —NHC(O)NR6BR6C, —N(O)m1, —NR6BR6C, —C(O)R6D, —C(O)OR6D, —C(O)NR6BR6C, —OR6A, —NR6BSO2R6A, —NR6BC(O)R6D, —NR6BC(O)OR6D, —NR6BOR6D, —OCX6,13, —OCHX6,12, substituted or unsubstituted alkyl, substituted or unsubstituted heteroalkyl, substituted or unsubstituted cycloalkyl, substituted or unsubstituted heterocycloalkyl, substituted or unsubstituted aryl, or substituted or unsubstituted heteroaryl; R7 is hydrogen, halogen, —CX7,13, —CHX7,12, —CH2X7,1, —CN, —SOn1R7A, —SOv1NR7BR7C, —NHNR7BR7C, —ONR7BR7C, —NHC(O)NHNR7BR7C, —NHC(O)NR7BR7C, —N(O)m1, —NR7BR7C, —C(O)R7D, —C(O)OR7D, —C(O)NR7BR7C, —OR7A, —NR7BSO2R7A, —NR7AC(O)R7C, —NR7BC(O)OR7D, —NR7BOR7D, —OCX7,13, —OCHX7,12, substituted or unsubstituted alkyl, substituted or unsubstituted heteroalkyl, substituted or unsubstituted cycloalkyl, substituted or unsubstituted heterocycloalkyl, substituted or unsubstituted aryl, or substituted or unsubstituted heteroaryl; R8 is hydrogen, halogen, —CX8,13, —CHX8,12, —CH2X8,1, —CN, —SOn1R8A, —SOv1NR8BR8C, —NHNR8BR8C, —ONR8BR8C, —NHC(O)NHNR8BR8C, —NHC(O)NR8BR8C, —N(O)m1, —NR8BR8C, —C(O)R8D, —C(O)OR8D, —C(O)NR8BR8C, —OR8A, —NR8BSO2R8A, —NR8BC(O)R8D, —NR8BC(O)OR8D, —NR8BOR8D, —OCX8,13, —OCHX8,12, substituted or unsubstituted alkyl, substituted or unsubstituted heteroalkyl, substituted or unsubstituted cycloalkyl, substituted or unsubstituted heterocycloalkyl, substituted or unsubstituted aryl, or substituted or unsubstituted heteroaryl; R9 is hydrogen, halogen, —CX9,13, —CHX9,12, —CH2X9,1, —CN, —SOn1R9A, —SOv1NR9BR9C, —NHNR9BR9C, —ONR9BR9C, —NHC(O)NHNR9BR9C, —NHC(O)NR9BR9C, —N(O)m1, —NR9BR9C, —C(O)R9D, —C(O)OR9D, —C(O)NR9BR9C, —OR9A, —NR9BSO2R9A, —NR9BC(O)R9D, —NR9BC(O)OR9D, —NR9BOR9D, —OCX9,13, —OCHX9,12, substituted or unsubstituted alkyl, substituted or unsubstituted heteroalkyl, substituted or unsubstituted cycloalkyl, substituted or unsubstituted heterocycloalkyl, substituted or unsubstituted aryl, or substituted or unsubstituted heteroaryl; R15 is hydrogen, substituted or unsubstituted alkyl, substituted or unsubstituted heteroalkyl, substituted or unsubstituted cycloalkyl, substituted or unsubstituted heterocycloalkyl, substituted or unsubstituted aryl, or substituted or unsubstituted heteroaryl; R1A, R1B, R1C, R1D, R2A, R2B, R2C, R2D, R3A, R3B, R3C, R3D, R4A, R4B, R4C, R4D, R5A, R5B, R5C, R5D, R6A, R6B, R6C, R6D, R7A, R7B, R7C, R7D, R8A, R8B, R8C, R8D, R9A, R9B, R9C and R9D are independently hydrogen, halogen, —CF3, —CCl3, —CBr3, —CI3, —OH, —NH2, —COOH, —CONH2, —NO2, —SH, —SO3H, —SO4H, —SO2NH2, —NHNH2, —ONH2, —NHC(O)NHNH2, —NHC(O)NH2, —NHSO2H, —NHC(O)H, —NHC(O)—OH, —NHOH, —OCF3, —OCCl3, —OCBr3, —OCI3, —OCHF2, —OCHCl2, —OCHBr2, —OCHI2, substituted or unsubstituted alkyl, substituted or unsubstituted heteroalkyl, substituted or unsubstituted cycloalkyl, substituted or unsubstituted heterocycloalkyl, substituted or un substituted aryl, or substituted or unsubstituted heteroaryl; R1B, R1C, R2B, R2C, R3B, R3C, R4B, R4C, R5B, R5C, R6B, R6C, R7B, R7C, R8B, R8C, R9B and R9C substituents bonded to the same nitrogen atom may optionally be joined to form a substituted or unsubstituted heterocycloalkyl or substituted or unsubstituted heteroaryl; and X1,1, X2,1, X3,1, X4,1, X5,1, X6,1, X7,1, X8,1 and X9,1 are independently —Cl, —Br, —I or —F.


Embodiment 58. A method of activating a Cystic Fibrosis Transmembrane Conductance Regulator (CFTR), comprising contacting the CFTR with an effective amount of a compound of Formula I:




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wherein: L1 is a bond, —O—, —S—, —N(R15)—, —C(O)N(R15)—, —C(O)—, substituted or unsubstituted alkylene or substituted or unsubstituted heteroalkylene, and R20 is substituted or unsubstituted cycloalkyl, substituted or unsubstituted heterocycloalkyl, substituted or unsubstituted aryl or substituted or unsubstituted heteroaryl; or -L1-R20 is substituted or unsubstituted alkyl; n1, n2, n3, n4, n5, n6, n7, n8, and n9 are independently an integer from 0 to 4; m1, m2, m3, m4, m5, m6, m7, m8, m9, v1, v2, v3, v4, v5, v6, v7, v8, and v9 are independently 1 or 2; R1 is hydrogen, halogen, —CX1,13, —CHX1,12, —CH2X1,1, —CN, —SOn1R1A, —SOv1NR1BR1C, —NHNR1BR1C, —ONR1BR1C, —NHC(O)NHNR1BR1C, —NHC(O)NR1BR1C, —N(O)m1, —NR1BR1C, —C(O)R1D, —C(O)OR1D, —C(O)NR1BR1C, —OR1A, —NR1BSO2R1A, —NR1BC(O)R1D, —NR1BC(O)OR1D, —NR1BOR1D, —OCX1,13, —OCHX1,12, substituted or unsubstituted alkyl, substituted or unsubstituted heteroalkyl, substituted or unsubstituted cycloalkyl, substituted or unsubstituted heterocycloalkyl, substituted or unsubstituted aryl, or substituted or unsubstituted heteroaryl; R2 is hydrogen, halogen, —CX2,13, —CHX2,12, —CH2X2,1, —CN, —SOn1R2A, —SOv1NR2BR2C, —NHNR2BR2C, —ONR2BR2C, —NHC(O)NHNR2BR2C, —NHC(O)NR2BR2C, —N(O)m1, —NR2BR2C, —C(O)R2D, —C(O)OR2D, —C(O)NR2BR2C, —OR2A, —NR2BSO2R2A, —NR2BC(O)R2D, —NR2BC(O)OR2D, —NR2BOR2D, —OCX2,13, —OCHX2,12, substituted or unsubstituted alkyl, substituted or unsubstituted heteroalkyl, substituted or unsubstituted cycloalkyl, substituted or unsubstituted heterocycloalkyl, substituted or unsubstituted aryl, or substituted or unsubstituted heteroaryl; R3 is hydrogen, halogen, —CX3,13, —CHX3,12, —CH2X3,1, —CN, —SOn1R3A, —SOv1NR3BR3C, —NHNR3BR3C, —ONR3BR3C, —NHC(O)NHNR3BR3C, —NHC(O)NR3BR3C, —N(O)m1, —NR3BR3C, —C(O)R3D, —C(O)OR3D, —C(O)NR3BR3C, —OR3A, —NR3BSO2R3A, —NR3BC(O)R3D, —NR3BC(O)OR3D, —NR3BOR3D, —OCX3,13, —OCHX3,12, substituted or unsubstituted alkyl, substituted or unsubstituted heteroalkyl, substituted or unsubstituted cycloalkyl, substituted or unsubstituted heterocycloalkyl, substituted or unsubstituted aryl, or substituted or unsubstituted heteroaryl; R4 is hydrogen, halogen, —CX4,13, —CHX4,12, —CH2X4,1, —CN, —SOn1R4A, —SOv1NR4BR4C, —NHNR4BR4C, —ONR4BR4C, —NHC(O)NHNR4BR4C, —NHC(O)NR4BR4C, —N(O)m1, —NR4BR4C, —C(O)R4D, —C(O)OR4D, —C(O)NR4BR4C, —OR4A, —NR4BSO2R4A, —NR4BC(O)R4D, —NR4BC(O)OR4D, —NR4BOR4D, —OCX4,13, —OCHX4,12, substituted or unsubstituted alkyl, substituted or unsubstituted heteroalkyl, substituted or unsubstituted cycloalkyl, substituted or unsubstituted heterocycloalkyl, substituted or unsubstituted aryl, or substituted or unsubstituted heteroaryl; R5 is hydrogen, halogen, —CX5,13, —CHX5,12, —CH2X5,1, —CN, —SOn1R5A, —SOv1NR5BR5C, —NHNR5BR5C, —ONR5BR5C, —NHC(O)NHNR5BR5C, —NHC(O)NR5BR5C, —N(O)m1, —NR5BR5C, —C(O)R5D, —C(O)OR5D, —C(O)NR5BR5C, —OR5A, —NR5BSO2R5A, —NR5BC(O)R5D, —NR5BC(O)OR5D, —NR5BOR5D, —OCX5,13, —OCHX5,12, substituted or unsubstituted alkyl, substituted or unsubstituted heteroalkyl, substituted or unsubstituted cycloalkyl, substituted or unsubstituted heterocycloalkyl, substituted or unsubstituted aryl, or substituted or unsubstituted heteroaryl; R1 and R2, R2 and R3, R3 and R4, or R1 and R5 are optionally joined to form substituted or unsubstituted cycloalkyl, substituted or unsubstituted heterocycloalkyl, substituted or unsubstituted aryl, or substituted or unsubstituted heteroaryl; R6 is hydrogen, halogen, —CX6,13, —CHX6,12, —CH2X6,1, —CN, —SOn1R6A, —SOv1NR6BR6C, —NHNR6BR6C, —ONR6BR6C, —NHC(O)NHNR6BR6C, —NHC(O)NR6BR6C, —N(O)m1, —NR6BR6C, —C(O)R6D, —C(O)OR6D, —C(O)NR6BR6C, —OR6A, —NR6BSO2R6A, —NR6BC(O)R6D, —NR6BC(O)OR6D, —NR6BOR6D, —OCX6,13, —OCHX6,12, substituted or unsubstituted alkyl, substituted or unsubstituted heteroalkyl, substituted or unsubstituted cycloalkyl, substituted or unsubstituted heterocycloalkyl, substituted or unsubstituted aryl, or substituted or unsubstituted heteroaryl; R7 is hydrogen, halogen, —CX7,13, —CHX7,12, —CH2X7,1, —CN, —SOn1R7A, —SOv1NR7BR7C, —NHNR7BR7C, —ONR7BR7C, —NHC(O)NHNR7BR7C, —NHC(O)NR7BR7C, —N(O)m1, —NR7BR7C, —C(O)R7D, —C(O)OR7D, —C(O)NR7BR7C, —OR7A, —NR7BSO2R7A, —NR7AC(O)R7C, —NR7BC(O)OR7D, —NR7BOR7D, —OCX7,13, —OCHX7,12, substituted or unsubstituted alkyl, substituted or unsubstituted heteroalkyl, substituted or unsubstituted cycloalkyl, substituted or unsubstituted heterocycloalkyl, substituted or unsubstituted aryl, or substituted or unsubstituted heteroaryl; R8 is hydrogen, halogen, —CX8,13, —CHX8,12, —CH2X8,1, —CN, —SOn1R8A, —SOv1NR8BR8C, —NHNR8BR8C, —ONR8BR8C, —NHC(O)NHNR8BR8C, —NHC(O)NR8BR8C, —N(O)m1, —NR8BR8C, —C(O)R8D, —C(O)OR8D, —C(O)NR8BR8C, —OR8A, —NR8BSO2R8A, —NR8BC(O)R8D, —NR8BC(O)OR8D, —NR8BOR8D, —OCX8,13, —OCHX8,12, substituted or unsubstituted alkyl, substituted or unsubstituted heteroalkyl, substituted or unsubstituted cycloalkyl, substituted or unsubstituted heterocycloalkyl, substituted or unsubstituted aryl, or substituted or unsubstituted heteroaryl; R9 is hydrogen, halogen, —CX9,13, —CHX9,12, —CH2X9,1, —CN, —SOn1R9A, —SOv1NR9BR9C, —NHNR9BR9C, —ONR9BR9C, —NHC(O)NHNR9BR9C, —NHC(O)NR9BR9C, —N(O)m1, —NR9BR9C, —C(O)R9D, —C(O)OR9D, —C(O)NR9BR9C, —OR9A, —NR9BSO2R9A, —NR9BC(O)R9D, —NR9BC(O)OR9D, —NR9BOR9D, —OCX9,13, —OCHX9,12, substituted or unsubstituted alkyl, substituted or unsubstituted heteroalkyl, substituted or unsubstituted cycloalkyl, substituted or unsubstituted heterocycloalkyl, substituted or unsubstituted aryl, or substituted or unsubstituted heteroaryl; R15 is hydrogen, substituted or unsubstituted alkyl, substituted or unsubstituted heteroalkyl, substituted or unsubstituted cycloalkyl, substituted or unsubstituted heterocycloalkyl, substituted or unsubstituted aryl, or substituted or unsubstituted heteroaryl; R1A, R1B, R1C, R1D, R2A, R2B, R2C, R2D, R3A, R3B, R3C, R3D, R4A, R4B, R4C, R4D, R5A, R5B, R5C, R5D, R6A, R6B, R6C, R6D, R7A, R7B, R7C, R7D, R8A, R8B, R8C, R8D, R9A, R9B, R9C and R9D are independently hydrogen, halogen, —CF3, —CCl3, —CBr3, —CI3, —OH, —NH2, —COOH, —CONH2, —NO2, —SH, —SO3H, —SO4H, —SO2NH2, —NHNH2, —ONH2, —NHC(O)NHNH2, —NHC(O)NH2, —NHSO2H, —NHC(O)H, —NHC(O)—OH, —NHOH, —OCF3, —OCCl3, —OCBr3, —OCI3, —OCHF2, —OCHCl2, —OCHBr2, —OCHI2, substituted or unsubstituted alkyl, substituted or unsubstituted heteroalkyl, substituted or unsubstituted cycloalkyl, substituted or unsubstituted heterocycloalkyl, substituted or unsubstituted aryl, or substituted or unsubstituted heteroaryl; R1B, R1C, R2B, R2C, R3B, R3C, R4B, R4C, R5B, R5C, R6B, R6C, R7B, R7C, R8B, R8C, R9B and R9C substituents bonded to the same nitrogen atom may optionally be joined to form a substituted or unsubstituted heterocycloalkyl or substituted or unsubstituted heteroaryl; and X1,1, X2,1, X3,1, X4,1, X5,1, X6,1, X7,1, X8,1 and X9,1 are independently —Cl, —Br, —I or —F.


Embodiment 59. A method of treating a cholestatic liver disease in a subject in need thereof, the method comprising administering to the subject an effective amount of a compound of Formula I:




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wherein: L1 is a bond, —O—, —S—, —N(R15)—, —C(O)N(R15)—, —C(O)—, substituted or unsubstituted alkylene or substituted or unsubstituted heteroalkylene, and R20 is substituted or unsubstituted cycloalkyl, substituted or unsubstituted heterocycloalkyl, substituted or unsubstituted aryl or substituted or unsubstituted heteroaryl; or -L1-R20 is substituted or unsubstituted alkyl; n1, n2, n3, n4, n5, n6, n7, n8, and n9 are independently an integer from 0 to 4; m1, m2, m3, m4, m5, m6, m7, m8, m9, v1, v2, v3, v4, v5, v6, v7, v8, and v9 are independently 1 or 2; R1 is hydrogen, halogen, —CX1,13, —CHX1,12, —CH2X1,1, —CN, —SOn1R1A, —SOv1NR1BR1C, —NHNR1BR1C, —ONR1BR1C, —NHC(O)NHNR1BR1C, —NHC(O)NR1BR1C, —N(O)m1, —NR1BR1C, —C(O)R1D, —C(O)OR1D, —C(O)NR1BR1C, —OR1A, —NR1BSO2R1A, —NR1BC(O)R1D, —NR1BC(O)OR1D, —NR1BOR1D, —OCX1,13, —OCHX1,12, substituted or unsubstituted alkyl, substituted or unsubstituted heteroalkyl, substituted or unsubstituted cycloalkyl, substituted or unsubstituted heterocycloalkyl, substituted or unsubstituted aryl, or substituted or unsubstituted heteroaryl; R2 is hydrogen, halogen, —CX2,13, —CHX2,12, —CH2X2,1, —CN, —SOn1R2A, —SOv1NR2BR2C, —NHNR2BR2C, —ONR2BR2C, —NHC(O)NHNR2BR2C, —NHC(O)NR2BR2C, —N(O)m1, —NR2BR2C, —C(O)R2D, —C(O)OR2D, —C(O)NR2BR2C, —OR2A, —NR2BSO2R2A, —NR2BC(O)R2D, —NR2BC(O)OR2D, —NR2BOR2D, —OCX2,13, —OCHX2,12, substituted or unsubstituted alkyl, substituted or unsubstituted heteroalkyl, substituted or unsubstituted cycloalkyl, substituted or unsubstituted heterocycloalkyl, substituted or unsubstituted aryl, or substituted or unsubstituted heteroaryl; R3 is hydrogen, halogen, —CX3,13, —CHX3,12, —CH2X3,1, —CN, —SOn1R3A, —SOv1NR3BR3C, —NHNR3BR3C, —ONR3BR3C, —NHC(O)NHNR3BR3C, —NHC(O)NR3BR3C, —N(O)m1, —NR3BR3C, —C(O)R3D, —C(O)OR3D, —C(O)NR3BR3C, —OR3A, —NR3BSO2R3A, —NR3BC(O)R3D, —NR3BC(O)OR3D, —NR3BOR3D, —OCX3,13, —OCHX3,12, substituted or unsubstituted alkyl, substituted or unsubstituted heteroalkyl, substituted or unsubstituted cycloalkyl, substituted or unsubstituted heterocycloalkyl, substituted or unsubstituted aryl, or substituted or unsubstituted heteroaryl; R4 is hydrogen, halogen, —CX4,13, —CHX4,12, —CH2X4,1, —CN, —SOn1R4A, —SOv1NR4BR4C, —NHNR4BR4C, —ONR4BR4C, —NHC(O)NHNR4BR4C, —NHC(O)NR4BR4C, —N(O)m1, —NR4BR4C, —C(O)R4D, —C(O)OR4D, —C(O)NR4BR4C, —OR4A, —NR4BSO2R4A, —NR4BC(O)R4D, —NR4BC(O)OR4D, —NR4BOR4D, —OCX4,13, —OCHX4,12, substituted or unsubstituted alkyl, substituted or unsubstituted heteroalkyl, substituted or unsubstituted cycloalkyl, substituted or unsubstituted heterocycloalkyl, substituted or unsubstituted aryl, or substituted or unsubstituted heteroaryl; R5 is hydrogen, halogen, —CX5,13, —CHX5,12, —CH2X5,1, —CN, —SOn1R5A, —SOv1NR5BR5C, —NHNR5BR5C, —ONR5BR5C, —NHC(O)NHNR5BR5C, —NHC(O)NR5BR5C, —N(O)m1, —NR5BR5C, —C(O)R5D, —C(O)OR5D, —C(O)NR5BR5C, —OR5A, —NR5BSO2R5A, —NR5BC(O)R5D, —NR5BC(O)OR5D, —NR5BOR5D, —OCX5,13, —OCHX5,12, substituted or unsubstituted alkyl, substituted or unsubstituted heteroalkyl, substituted or unsubstituted cycloalkyl, substituted or unsubstituted heterocycloalkyl, substituted or unsubstituted aryl, or substituted or unsubstituted heteroaryl; R1 and R2, R2 and R3, R3 and R4, or R1 and R5 are optionally joined to form substituted or unsubstituted cycloalkyl, substituted or unsubstituted heterocycloalkyl, substituted or unsubstituted aryl, or substituted or unsubstituted heteroaryl; R6 is hydrogen, halogen, —CX6,13, —CHX6,12, —CH2X6,1, —CN, —SOn1R6A, —SOv1NR6BR6C, —NHNR6BR6C, —ONR6BR6C, —NHC(O)NHNR6BR6C, —NHC(O)NR6BR6C, —N(O)m1, —NR6BR6C, —C(O)R6D, —C(O)OR6D, —C(O)NR6BR6C, —OR6A, —NR6BSO2R6A, —NR6BC(O)R6D, —NR6BC(O)OR6D, —NR6BOR6D, —OCX6,13, —OCHX6,12, substituted or unsubstituted alkyl, substituted or unsubstituted heteroalkyl, substituted or unsubstituted cycloalkyl, substituted or unsubstituted heterocycloalkyl, substituted or unsubstituted aryl, or substituted or unsubstituted heteroaryl; R7 is hydrogen, halogen, —CX7,13, —CHX7,12, —CH2X7,1, —CN, —SOn1R7A, —SOv1NR7BR7C, —NHNR7BR7C, —ONR7BR7C, —NHC(O)NHNR7BR7C, —NHC(O)NR7BR7C, —N(O)m1, —NR7BR7C, —C(O)R7D, —C(O)OR7D, —C(O)NR7BR7C, —OR7A, —NR7BSO2R7A, —NR7AC(O)R7C, —NR7BC(O)OR7D, —NR7BOR7D, —OCX7,12, —OCHX7,12, substituted or unsubstituted alkyl, substituted or unsubstituted heteroalkyl, substituted or unsubstituted cycloalkyl, substituted or unsubstituted heterocycloalkyl, substituted or unsubstituted aryl, or substituted or unsubstituted heteroaryl; R8 is hydrogen, halogen, —CX8,13, —CHX8,12, —CH2X8,1, —CN, —SOn1R8A, —SOv1NR8BR8C, —NHNR8BR8C, —ONR8BR8C, —NHC(O)NHNR8BR8C, —NHC(O)NR8BR8C, —N(O)m1, —NR8BR8C, —C(O)R8D, —C(O)OR8D, —C(O)NR8BR8C, —OR8A, —NR8BSO2R8A, —NR8BC(O)R8D, —NR8BC(O)OR8D, —NR8BOR8D, —OCX8,13, —OCHX8,12, substituted or unsubstituted alkyl, substituted or unsubstituted heteroalkyl, substituted or unsubstituted cycloalkyl, substituted or unsubstituted heterocycloalkyl, substituted or unsubstituted aryl, or substituted or unsubstituted heteroaryl; R9 is hydrogen, halogen, —CX9,13, —CHX9,12, —CH2X9,1, —CN, —SOn1R9A, —SOv1NR9BR9C, —NHNR9BR9C, —ONR9BR9C, —NHC(O)NHNR9BR9C, —NHC(O)NR9BR9C, —N(O)m1, —NR9BR9C, —C(O)R9D, —C(O)OR9D, —C(O)NR9BR9C, —OR9A, —NR9BSO2R9A, —NR9BC(O)R9D, —NR9BC(O)OR9D, —NR9BOR9D, —OCX9,13, —OCHX9,12, substituted or unsubstituted alkyl, substituted or unsubstituted heteroalkyl, substituted or unsubstituted cycloalkyl, substituted or unsubstituted heterocycloalkyl, substituted or unsubstituted aryl, or substituted or unsubstituted heteroaryl; R15 is hydrogen, substituted or unsubstituted alkyl, substituted or unsubstituted heteroalkyl, substituted or unsubstituted cycloalkyl, substituted or unsubstituted heterocycloalkyl, substituted or unsubstituted aryl, or substituted or unsubstituted heteroaryl; R1A, R1B, R1C, R1D, R2A, R2B, R2C, R2D, R3A, R3B, R3C, R3D, R4A, R4B, R4C, R4D, R5A, R5B, R5C, R5D, R6A, R6B, R6C, R6D, R7A, R7B, R7C, R7D, R8A, R8B, R8C, R8D, R9A, R9B, R9C and R9D are independently hydrogen, halogen, —CF3, —CCl3, —CBr3, —CI3, —OH, —NH2, —COOH, —CONH2, —NO2, —SH, —SO3H, —SO4H, —SO2NH2, —NHNH2, —ONH2, —NHC(O)NHNH2, —NHC(O)NH2, —NHSO2H, —NHC(O)H, —NHC(O)—OH, —NHOH, —OCF3, —OCCl3, —OCBr3, —OCI3, —OCHF2, —OCHCl2, —OCHBr2, —OCHI2, substituted or unsubstituted alkyl, substituted or unsubstituted heteroalkyl, substituted or unsubstituted cycloalkyl, substituted or unsubstituted heterocycloalkyl, substituted or unsubstituted aryl, or substituted or unsubstituted heteroaryl; R1B, R1C, R2B, R2C, R3B, R3C, R4B, R4C, R5B, R5C, R6B, R6C, R7B, R7C, R8B, R8C, R9B and R9C substituents bonded to the same nitrogen atom may optionally be joined to form a substituted or unsubstituted heterocycloalkyl or substituted or unsubstituted heteroaryl; and X1,1, X2,1, X3,1, X4,1, X5,1, X6,1, X7,1, X8,1 and X9,1 are independently —Cl, —Br, —I or —F.


Embodiment 60. A method of treating a pulmonary disease or disorder in a subject in need thereof, the method comprising administrating to the subject an effective amount of a compound of Formula I:




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wherein: L1 is a bond, —O—, —S—, —N(R15)—, —C(O)N(R15)—, —C(O)—, substituted or unsubstituted alkylene or substituted or unsubstituted heteroalkylene, and R20 is substituted or unsubstituted cycloalkyl, substituted or unsubstituted heterocycloalkyl, substituted or unsubstituted aryl or substituted or unsubstituted heteroaryl; or -L1-R20 is substituted or unsubstituted alkyl; n1, n2, n3, n4, n5, n6, n7, n8, and n9 are independently an integer from 0 to 4; m1, m2, m3, m4, m5, m6, m7, m8, m9, v1, v2, v3, v4, v5, v6, v7, v8, and v9 are independently 1 or 2; R1 is hydrogen, halogen, —CX1,13, —CHX1,12, —CH2X1,1, —CN, —SOn1R1A, —SOv1NR1BR1C, —NHNR1BR1C, —ONR1BR1C, —NHC(O)NHNR1BR1C, —NHC(O)NR1BR1C, —N(O)m1, —NR1BR1C, —C(O)R1D, —C(O)OR1D, —C(O)NR1BR1C, —OR1A, —NR1BSO2R1A, —NR1BC(O)R1D, —NR1BC(O)OR1D, —NR1BOR1D, —OCX1,13, —OCHX1,12, substituted or unsubstituted alkyl, substituted or unsubstituted heteroalkyl, substituted or unsubstituted cycloalkyl, substituted or unsubstituted heterocycloalkyl, substituted or unsubstituted aryl, or substituted or unsubstituted heteroaryl; R2 is hydrogen, halogen, —CX2,13, —CHX2,12, —CH2X2,1, —CN, —SOn1R2A, —SOv1NR2BR2C, —NHNR2BR2C, —ONR2BR2C, —NHC(O)NHNR2BR2C, —NHC(O)NR2BR2C, —N(O)m1, —NR2BR2C, —C(O)R2D, —C(O)OR2D, —C(O)NR2BR2C, —OR2A, —NR2BSO2R2A, —NR2BC(O)R2D, —NR2BC(O)OR2D, —NR2BOR2D, —OCX2,13, —OCHX2,12, substituted or unsubstituted alkyl, substituted or unsubstituted heteroalkyl, substituted or unsubstituted cycloalkyl, substituted or unsubstituted heterocycloalkyl, substituted or unsubstituted aryl, or substituted or unsubstituted heteroaryl; R3 is hydrogen, halogen, —CX3,13, —CHX3,12, —CH2X3,1, —CN, —SOn1R3A, —SOv1NR3BR3C, —NHNR3BR3C, —ONR3BR3C, —NHC(O)NHNR3BR3C, —NHC(O)NR3BR3C, —N(O)m1, —NR3BR3C, —C(O)R3D, —C(O)OR3D, —C(O)NR3BR3C, —OR3A, —NR3BSO2R3A, —NR3BC(O)R3D, —NR3BC(O)OR3D, —NR3BOR3D, —OCX3,13, —OCHX3,12, substituted or unsubstituted alkyl, substituted or unsubstituted heteroalkyl, substituted or unsubstituted cycloalkyl, substituted or unsubstituted heterocycloalkyl, substituted or unsubstituted aryl, or substituted or unsubstituted heteroaryl; R4 is hydrogen, halogen, —CX4,13, —CHX4,12, —CH2X4,1, —CN, —SOn1R4A, —SOv1NR4BR4C, —NHNR4BR4C, —ONR4BR4C, —NHC(O)NHNR4BR4C, —NHC(O)NR4BR4C, —N(O)m1, —NR4BR4C, —C(O)R4D, —C(O)OR4D, —C(O)NR4BR4C, —OR4A, —NR4BSO2R4A, —NR4BC(O)R4D, —NR4BC(O)OR4D, —NR4BOR4D, —OCX4,13, —OCHX4,12, substituted or unsubstituted alkyl, substituted or unsubstituted heteroalkyl, substituted or unsubstituted cycloalkyl, substituted or unsubstituted heterocycloalkyl, substituted or unsubstituted aryl, or substituted or unsubstituted heteroaryl; R5 is hydrogen, halogen, —CX5,13, —CHX5,12, —CH2X5,1, —CN, —SOn1R5A, —SOv1NR5BR5C, —NHNR5BR5C, —ONR5BR5C, —NHC(O)NHNR5BR5C, —NHC(O)NR5BR5C, —N(O)m1, —NR5BR5C, —C(O)R5D, —C(O)OR5D, —C(O)NR5BR5C, —OR5A, —NR5BSO2R5A, —NR5BC(O)R5D, —NR5BC(O)OR5D, —NR5BOR5D, —OCX5,13, —OCHX5,12, substituted or unsubstituted alkyl, substituted or unsubstituted heteroalkyl, substituted or unsubstituted cycloalkyl, substituted or unsubstituted heterocycloalkyl, substituted or unsubstituted aryl, or substituted or unsubstituted heteroaryl; R1 and R2, R2 and R3, R3 and R4, or R1 and R5 are optionally joined to form substituted or unsubstituted cycloalkyl, substituted or unsubstituted heterocycloalkyl, substituted or unsubstituted aryl, or substituted or unsubstituted heteroaryl; R6 is hydrogen, halogen, —CX6,13, —CHX6,12, —CH2X6,1, —CN, —SOn1R6A, —SOv1NR6BR6C, —NHNR6BR6C, —ONR6BR6C, —NHC(O)NHNR6BR6C, —NHC(O)NR6BR6C, —N(O)m1, —NR6BR6C, —C(O)R6D, —C(O)OR6D, —C(O)NR6BR6C, —OR6A, —NR6BSO2R6A, —NR6BC(O)R6D, —NR6BC(O)OR6D, —NR6BOR6D, —OCX6,12, —OCHX6,12, substituted or unsubstituted alkyl, substituted or unsubstituted heteroalkyl, substituted or unsubstituted cycloalkyl, substituted or unsubstituted heterocycloalkyl, substituted or unsubstituted aryl, or substituted or unsubstituted heteroaryl; R7 is hydrogen, halogen, —CX7,12, —CHX7,12, —CH2X7,1, —CN, —SOn1R7A, —SOv1NR7BR7C, —NHNR7BR7C, —ONR7BR7C, —NHC(O)NHNR7BR7C, —NHC(O)NR7BR7C, —N(O)m1, —NR7BR7C, —C(O)R7D, —C(O)OR7D, —C(O)NR7BR7C, —OR7A, —NR7BSO2R7A, —NR7AC(O)R7C, —NR7BC(O)OR7D, —NR7BOR7D, —OCX7,12, —OCHX7,12, substituted or unsubstituted alkyl, substituted or unsubstituted heteroalkyl, substituted or unsubstituted cycloalkyl, substituted or unsubstituted heterocycloalkyl, substituted or unsubstituted aryl, or substituted or unsubstituted heteroaryl; R8 is hydrogen, halogen, —CX8,13, —CHX8,12, —CH2X8,1, —CN, —SOn1R8A, —SOv1NR8BR8C, —NHNR8BR8C, —ONR8BR8C, —NHC(O)NHNR8BR8C, —NHC(O)NR8BR8C, —N(O)m1, —NR8BR8C, —C(O)R8D, —C(O)OR8D, —C(O)NR8BR8C, —OR8A, —NR8BSO2R8A, —NR8BC(O)R8D, —NR8BC(O)OR8D, —NR8BOR8D, —OCX8,13, —OCHX8,12, substituted or unsubstituted alkyl, substituted or unsubstituted heteroalkyl, substituted or unsubstituted cycloalkyl, substituted or unsubstituted heterocycloalkyl, substituted or unsubstituted aryl, or substituted or unsubstituted heteroaryl; R9 is hydrogen, halogen, —CX9,13, —CHX9,12, —CH2X9,1, —CN, —SOn1R9A, —SOv1NR9BR9C, —NHNR9BR9C, —ONR9BR9C, —NHC(O)NHNR9BR9C, —NHC(O)NR9BR9C, —N(O)m1, —NR9BR9C, —C(O)R9D, —C(O)OR9D, —C(O)NR9BR9C, —OR9A, —NR9BSO2R9A, —NR9BC(O)R9D, —NR9BC(O)OR9D, —NR9BOR9D, —OCX9,13, —OCHX9,12, substituted or unsubstituted alkyl, substituted or unsubstituted heteroalkyl, substituted or unsubstituted cycloalkyl, substituted or unsubstituted heterocycloalkyl, substituted or unsubstituted aryl, or substituted or unsubstituted heteroaryl; R15 is hydrogen, substituted or unsubstituted alkyl, substituted or unsubstituted heteroalkyl, substituted or unsubstituted cycloalkyl, substituted or unsubstituted heterocycloalkyl, substituted or unsubstituted aryl, or substituted or unsubstituted heteroaryl; R1A, R1B, R1C, R1D, R2A, R2B, R2C, R2D, R3A, R3B, R3C, R3D, R4A, R4B, R4C, R4D, R5A, R5B, R5C, R5D, R6A, R6B, R6C, R6D, R7A, R7B, R7C, R7D, R8A, R8B, R8C, R8D, R9A, R9B, R9C and R9D are independently hydrogen, halogen, —CF3, —CCl3, —CBr3, —CI3, —OH, —NH2, —COOH, —CONH2, —NO2, —SH, —SO3H, —SO4H, —SO2NH2, —NHNH2, —ONH2, —NHC(O)NHNH2, —NHC(O)NH2, —NHSO2H, —NHC(O)H, —NHC(O)—OH, —NHOH, —OCF3, —OCCl3, —OCBr3, —OCI3, —OCHF2, —OCHCl2, —OCHBr2, —OCHI2, substituted or unsubstituted alkyl, substituted or unsubstituted heteroalkyl, substituted or unsubstituted cycloalkyl, substituted or unsubstituted heterocycloalkyl, substituted or unsubstituted aryl, or substituted or unsubstituted heteroaryl; R1B, R1C, R2B, R2C, R3B, R3C, R4B, R4C, R5B, R5C, R6B, R6C, R7B, R7C, R8B, R8C, R9B and R9C substituents bonded to the same nitrogen atom may optionally be joined to form a substituted or unsubstituted heterocycloalkyl or substituted or unsubstituted heteroaryl; and X1,1, X2,1, X3,1, X4,1, X5,1, X6,1, X7,1, X8,1 and X9,1 are independently —Cl, —Br, —I or —F.


Embodiment 61. The method of embodiment 60, wherein the pulmonary disease or disorder is chronic obstructive pulmonary disease, bronchitis, asthma, and cigarette smoke-induced lung dysfunction.


Embodiment 62. A method of treating constipation, comprising administering to a subject in need thereof a therapeutically effective amount a compound in any of embodiments 1 to 26.


Embodiment 63. The method of embodiment 62, further comprising administering to the subject an anti-constipation agent.


Embodiment 64. The method of embodiment 62 or 63, wherein the compound is administered orally.


Embodiment 65. The method of embodiment 62, 63 or 64, wherein the constipation is opioid-induced constipation, chronic idiopathic constipation or irritable bowel syndrome with constipation predominance.


Embodiment 66. A method of treating a dry eye disorder, comprising administering to a subject in need thereof a therapeutically effective amount of a compound in any of embodiments 1 to 26.


Embodiment 67. The method of embodiment 66, wherein the dry eye disorder is a lacrimal gland disorder.


Embodiment 68. The method of embodiment 66 or 67, further comprising administering to the subject an anti-dry eye agent.


Embodiment 69. A method of increasing lacrimation, comprising administering to a subject in need thereof a compound in any of embodiments 1 to 26.


Embodiment 70. A method of activating Cystic Fibrosis Transmembrane Conductance Regulator (CFTR), comprising contacting CFTR with a compound in any of embodiments 1 to 26.


Embodiment 71. A method of treating a cholestatic liver disease in a subject in need thereof, the method comprising administering to the subject an effective amount of a compound in any of embodiments 1 to 26.


Embodiment 72. A method of treating a pulmonary disease or disorder in a subject in need thereof, the method comprising administrating to the subject an effective amount of a compound in any of embodiments 1 to 26.


Embodiment 73. The method of embodiment 72, wherein the pulmonary disease or disorder is chronic obstructive pulmonary disease, bronchitis, asthma, and cigarette smoke-induced lung dysfunction.


VI. EXAMPLES
Example 1. Constipation

A cell-based high-throughput screen was done for 120,000 drug-like, synthetic small molecules. Active compounds were characterized for mechanism of action and one lead compound was tested in a loperamide-induced constipation model in mice.


Several classes of novel CFTR activators were identified, one of which, the phenylquinoxalinone CFTRact-J027, fully activated CFTR chloride conductance with EC50˜200 nM, without causing elevation of cytoplasmic cAMP. Orally administered CFTRact-J027 normalized stool output and water content in a loperamide-induced mouse model of constipation with ED50˜0.5 mg/kg; CFTRact-J027 was without effect in cystic fibrosis mice lacking functional CFTR. Short-circuit current, fluid secretion and motility measurements in mouse intestine indicated a pro-secretory action of CFTRact-J027 without direct stimulation of intestinal motility. Oral administration of 10 mg/kg CFTRact-J027 showed minimal bioavailability, rapid hepatic metabolism and blood levels<200 nM, and without apparent toxicity after chronic administration.


CFTRact-J027 or alternative small-molecule CFTR-targeted activators may be efficacious for the treatment of constipation.


High-throughput screening was done using a diverse collection of 120,000 drug-like synthetic compounds obtained from ChemDiv Inc. (San Diego, Calif., USA) and Asinex (Winston-Salem, N.C., USA). For structure-activity analysis, 600 commercially available analogs (ChemDiv Inc.) of active compounds identified in the primary screen were tested. Other chemicals were purchased from Sigma-Aldrich (St. Louis, Mo., USA) unless indicated otherwise.


CFTRact-J027 synthesis. To a solution of o-phenylenediamine (1 g, 9.24 mmol) in DMF (30 mL) was added potassium carbonate (2.5 g, 18.4 mmol) and benzyl bromide (0.73 mL, 6.2 mmol) then stirred overnight at ambient temperature. The reaction mixture was diluted with CH2Cl2, washed with water, dried over MgSO4 and concentrated under reduced pressure. The residue was purified by flash chromatography to give the intermediate N1-benzylbenzene-1,2-diamine as a brown liquid. 1H NMR (300 MHz, CDCl3): δ 7.45-7.31 (m, 5H), 6.86-6.69 (m, 4H), 4.35 (s, 2H), 3.50 (br, 3H); MS: m/z 199 (M+H). Then, a solution of the intermediate (400 mg, 2 mmol) and 5-nitroisatin (380 mg, 2 mmol) in acetic acid (5 mL) was refluxed for 2 h. The reaction mixture was cooled to room temperature and solvent removed under reduced pressure. The residue was dissolved with methanol and acetic acid was added to crystallize 3-(2-amino-5-nitrophenyl)-1-benzylquinoxalin-2(1H)-one (CFTRact-J027) as a yellow powder with >99% purity. 1H NMR (300 MHz, DMSO-d6): δ 9.15 (d, 1H, J=2.8 Hz), 8.07 (dd, 1H, J=2.7, 9.2 Hz), 7.97 (dd, 1H, J=1.2, 7.9 Hz), 7.82 (brs, 2H), 7.60-7.27 (m, 7H), 6.92 (d, 1H, J=9.2 Hz), 5.59 (brs, 2H); 13C NMR (75 MHz, DMSO-d6): δ 155.0, 154.6, 153.3, 136.3, 135.3, 132.8, 132.2, 131.0, 130.0, 129.5, 129.1, 127.7, 127.3, 126.8, 124.1, 116.1, 115.9, 115.4, 45.9; MS: m/z 373 (M+H).


Cell culture Fischer Rat Thyroid (FRT) cells stably co-expressing human wild-type CFTR and the halide-sensitive yellow fluorescent protein (YFP)-H148Q were generated as previously described [12], Cells were cultured on plastic in Coon's-modified Ham's F12 medium supplemented with 10% fetal bovine serum, 2 mM L-glutamine, 100 units/ml penicillin, and 100 μg/ml streptomycin. For high-throughput screening, cells were plated in black 96-well microplates (Corning-Costar Corp., Corning, N.Y., USA) at a density of 20,000 cells per well. Screening was done 24-48 hours after plating.


High-throughput screening. Screening was carried out using a Beckman Coulter integrated system equipped with a liquid handling system and two FLUOstar fluorescence plate readers (BMG Labtechnologies, Durham, N.C., USA), each equipped with dual syringe pumps and 500±10 nm excitation and 535±15 nm emission filters (details in ref. 12). CFTR- and YFP-expressing FRT cells were grown at 37° C./5% CO2 for 24-48 hours after plating. At the time of assay, cells were washed three times with phosphate-buffered saline (PBS) and then incubated for 10 min with 60 μl of PBS containing test compounds (at 10 μM) and a low concentration of forskolin (125 nM). Each well was assayed individually for I influx in a plate reader by recording fluorescence continuously (200 ms per point) for 2 s (baseline) and then for 12 s after rapid (<1 s) addition of 165 μL of PBS in which 137 mM Cl was replaced by I. The initiate rate of I influx was computed by determined using exponential regression. All compound plates contained negative controls (DMSO vehicle) and positive controls (20 μM forskolin).


Short-circuit current measurement. Short-circuit current was measured in FRT cells stably expressing wild-type human CFTR cultured on porous filters as described [12], The basolateral solution contained 130 mM NaCl, 2.7 mM KCl, 1.5 mM KH2PO4, 1 mM CaCl2, 0.5 mM MgCl2, 10 mM glucose, and 10 mM Na-HEPES (pH 7.3, 37° C.). In the apical solution 65 mM NaCl was replaced by Na gluconate, and CaCl2 was increased to 2 mM, and the basolateral membrane was permeabilized with 250 μg/ml amphotericin B. Short-circuit current was measured in freshly harvested adult mouse colon at 37° C. using symmetrical Krebs-bicarbonate buffer.


cAMP assay. Intracellular cAMP activity was measured using a GloSensor luminescence assay (Promega Corp., Madison, Wis., USA). FRT null cells were stably transfected with the pGloSensor cAMP plasmid and plated onto white 96-well microplates and grown to confluence. Cells were washed three times with PBS and incubated with 5 μM CFTRact-J027 for 10 min in the absence and presence of 100 nM forskolin. cAMP was assayed according to the manufacturer's instructions.


Pharmacokinetics All animal experiments were approved by UCSF Institutional Animal Care and Use Committee. Female CD1 mice were treated with 10 mg/kg CFTRact-J027 (saline containing 5% DMSO and 10% Kolliphor HS 15) either intraperitoneally (ip) or orally. Blood was collected at 15, 30, 60, 150, 240 and 360 min after treatment by orbital puncture and centrifuged at 5000 rpm for 15 min to separate plasma. Plasma samples (60 μL) were mixed with 300 μL acetonitrile and centrifuged at 13000 rpm for 20 min, and 90 μL of the supernatant was used for LC/MS. The solvent system consisted of a linear gradient from 5 to 95% acetonitrile over 16 min (0.2 m1/min flow). Mass spectra was acquired on a mass spectrometer (Waters 2695 and Micromass ZQ) using electrospray (+) ionization, mass ranging from 100 to 1500 Da, cone voltage 40 V. Calibration standards were prepared in plasma from untreated mice to which known amounts of CFTRact-J027 were added.


In vitro metabolic stability. CFTRact-J027 (5 μM) was incubated for specified times at 37° C. with mouse liver microsomes (1 mg protein/m1; Sigma-Aldrich) in potassium phosphate buffer (100 mM) containing 1 mM NADPH, as described [13], The mixture was then chilled on ice, and 0.5 ml of ice-cold ethyl acetate was added. Samples were centrifuged for 15 min at 3000 rpm, the supernatant evaporated to dryness, and the residue was dissolved in 100 μL mobile phase (acetonitrile:water, 3:1) for LC/MS and assayed as described above.


Murine model of constipation. Female CD1 mice (age 8-10 weeks) were administered loperamide (0.3 mg/kg, ip, Sigma-Aldrich) to produce constipation. Various amounts of CFTRact-J027 (0.1, 0.3, 1, 3 and 10 mg/kg) were given at the same time (for ip administration) or 1 h before (for oral administration) loperamide. Control mice were treated with vehicle only. Some mice were treated orally with lubiprostone (0.5 mg/kg, Sigma-Aldrich) or linaclotide (0.5 mg/kg, Toronto Research Chemicals Inc., Toronto, Ontario, Canada). After loperamide injection, mice were placed individually in metabolic cages with food and water provided ad libitum. Stool samples were collected for 3 h, and total stool weight and number of fecal pellets were quantified. To measure stool water content stool samples were dried at 80° C. for 24 h and water content was calculated as [wet weight-dry weight]/wet weight. Similar studies were done in cystic fibrosis (CF) mice (ΔF508 homozygous) lacking functional CFTR. Some studies were done using the chemically similar but inactive analog of CFTRact-J027, 3-(2-amino-5-nitrophenyl)-1-(methyl)-2(1H)-quinoxalinone.


In vivo intestinal transit and ex vivo intestinal contractility. Whole-gut transit time was determined using an orally administered marker (200 μL, 5% Evans Blue, 5% gum Arabic) and measuring the time of its appearance in stool. Mice were administered loperamide and CFTRact-J027 (10 mg/kg) or vehicle intraperitoneally at zero time. For ex vivo contractility measurements, mice were euthanized by avertin overdose (200 mg/kg, 2,2,2-tribromethanol, Sigma-Aldrich) and ileum and colon segments of ˜2 cm length were isolated and washed with Krebs-Henseleit buffer. The ends of the intestinal segments were tied, connected to a force transducer (Biopac Systems, Goleta, Calif., USA) and tissues were transferred to an organ chamber (Biopac Systems) containing Krebs-Henseleit buffer at 37° C. aerated with 95% O2, 5% CO2. Ileum and colon were stabilized for 60 min with resting tensions of 0.5 and 0.2 g respectively, and solutions were changed every 15 min. Effects of CFTRact-J027 on baseline and loperamide-suppressed isometric intestinal contractions were recorded.


In vivo intestinal secretion and absorption. Mice (wildtype or CF) were given access to 5% dextrose water but not solid food for 24 h before experiments. Mice were anesthetized with isoflurane and body temperature was maintained during surgery at 36-38° C. using a heating pad. A small abdominal incision was made to expose the small intestine, and closed mid-jejunal loops (length 2-3 cm) were isolated by sutures. Loops were injected with 100 μL vehicle alone or 100 μg CFTRact-J027 in vehicle. The abdominal incision was closed with sutures, and mice were allowed to recover from anesthesia. Intestinal loops were removed at 90 min and loop length and weight were measured to quantify fluid secretion. Intestinal absorption was measured in CF mice (to prevent secretion) as described above, except that the loops were removed at 0 or 30 min. Absorption was calculated as 1−(loop weight at 0 min−loop weight at 30 min)/loop weight at 0 min.


Chronic administration and toxicity studies. Mice were administered 10 mg/kg CFTRact-J027 or vehicle orally once a day for 7 d. One hour after the final dose mice were treated with loperamide (0.3 mg/kg, ip) and stool was collected for 3 h. In vivo toxicity was assessed in these mice by measuring lung wet/dry weight ratio, complete blood count (HEMAVET 950FS, Drew Scientific Inc., Florida, USA) and serum chemistry (Idexx Laboratories Inc., Sacramento, Calif., USA) 4 h after the last CFTRact-J027 dose. In vitro cytotoxicity was measured in FRT cells incubated with 25 μM CFTRact-J027 for 8 and 24 h. Cytotoxicity was measured by Alamar Blue assay according to the manufacturer's instructions (Invitrogen, Carlsbad, Calif., USA).


Statistical analysis. Experiments with two groups were analyzed with Student's t-test, when there are 3 groups or more analysis was made with one-way analysis of variance and post-hoc Newman-Keuls multiple comparisons test. P<0.05 was taken as statistically significant.


Example 2. Dry Eye

Mice. Wild-type (WT) and CF (homozygous ΔF508-CFTR mutant) mice in a CD1 genetic background were bred at the University of California San Francisco (UCSF) Animal Facility. Mice aged 8 to 12 weeks (25 to 35 g) were used. Female BALB/c mice (7-8 weeks old) were purchased from the Harlan Laboratory (Livermore, Calif., USA). Animal protocols were approved by the UCSF Institutional Animal Care and Use Committee and were in compliance with the ARVO Statement for the Use of Animals in Ophthalmic and Vision Research.


Short-circuit current. Fischer rat thyroid (FRT) cells stably expressing wild-type human CFTR were cultured on Snapwell inserts (Corning Costar, Corning N.Y., USA) for short-circuit current (Isc) measurements. After 6-9 days in culture, when the transepithelial resistance was >1000 Ω/cm2, the inserts were mounted in an Ussing chamber system (World Precision Instruments, Sarasota, Fla., USA). The basolateral solution contained 130 mM NaCl, 2.7 mM KCl, 1.5 mM KH2PO4, 1 mM CaCl2, 0.5 mM MgCl2, 10 mM glucose, and 10 mM Na-HEPES (pH 7.3). In the apical bathing solution, 65 mM NaCl was replaced by Na gluconate, and CaCl2 was increased to 2 mM. Both solutions were bubbled with air and maintained at 37° C. The basolateral membrane was permeabilized with 250 μg/ml amphotericin B (26, 27). Hemichambers were connected to a DVC-1000 voltage clamp via Ag/AgCl electrodes and 3 M KCl agar bridges for Isc recording.


cAMP and cytotoxicity assays Intracellular cAMP activity was measured using a GloSensor luminescence assay (Promega Corp., Madison, Wis., USA). FRT cells stably transfected with the pGloSensor cAMP plasmid (Promega Corp.) were cultured in white 96-well microplates (Corning Costar) overnight. Cells were then washed three times with PBS and incubated with 5 μM test compound for 10 min in the absence and presence of 100 nM forskolin. To assay cytotoxicity, FRT cells were cultured overnight in black 96-well Costar microplate wells and incubated with test compounds at up to 100 μM (the maximum solubility in PBS) for 1 or 24 h. Cytotoxicity was measured by Alamar Blue assay according to the manufacturer's instructions (Invitrogen, Carlsbad, Calif., USA).


Ocular surface potential difference measurements. Open-circuit transepithelial PD were measured continuously in anesthetized mice in response to serial perfusions of different solutions over the ocular surface, as described (21). Mice were anesthetized with Avertin (2,2,2-tribromoethanol, 125 mg/kg intraperitoneal, Sigma-Aldrich, St. Louis, Mo., USA), and core temperature was maintained at 37° C. using a heating pad. Eyes were oriented with the cornea and conjunctiva facing upward and exposed by retracting the eyelid with cross-action forceps. Solutions were isosmolar (320±10 mOsM; compositions provided in ref. 21) and contained 10μ□□ indomethacin to prevent CFTR activation by prostaglandins. The ocular surface was perfused at 6 mL/min through plastic tubing using a multireservoir gravity pinch-valve system (ALA Scientific, Westbury, N.Y., USA) and variable-flow peristaltic pump (medium flow model; Fisher Scientific, Fair Lawn, N.J., USA). A probe catheter was fixed 1 mm above the cornea using a micropositioner and a suction cannula was positioned 3 mm from the orbit. The measuring electrode was in contact to the perfusion catheter and connected to a high-impedance voltmeter (IsoMilivolt Meter; WPI). The reference electrode was grounded via a winged 21-gauge needle filled with isosmolar saline, and inserted subcutaneously in the abdomen. Measuring and reference electrodes consisted of Ag/AgCl with 3 M KCl agar bridges.


Tear secretion. To measure unstimulated tear production, phenol red threads (Zone-Quick, Oasis Medical, Glendora, Calif., USA) were placed for 10 s in the lateral canthi of isofluorane-anesthetized mice using jewelers' forceps. Tear volume was measured as the length of thread wetting, as visualized under a dissecting microscope. Serial measurements were used to evaluate compound pharmacodynamics after application of 2-μL drops of compound formulations (50-100 μM compound in PBS containing 0.5% polysorbate and 0.5% DMSO) comparing to vehicle.


Lissamine green staining. To assess corneal epithelial disruption, 5 μL of lissamine green (LG) dye (1%) was applied to the ocular surface of isofluorane-anesthetized mice. Photographs of the eye were taken using a Nikon Digital camera adapted to an Olympus Zoom Stereo Microscope (Olympus, Center Valley, Pa., USA). Each corneal quadrant was scored on a 3-point scale by one blinded, trained observer, with the extent of staining in each quadrant classified as: 0, no staining; 1, sporadic (involving <25% of the total surface) staining; grade 2, diffuse punctate staining (25-75%); and grade 3, coalesced punctate staining (≥75%). The total grade is reported as the sum of scores from all four quadrants, ranging from 0 to 12.


Pharmacokinetics and tissue distribution. To determine the residence time of CFTR activators in the pre-ocular mouse tear film, compounds were recovered for liquid chromatography/mass spectroscopy (LC/MS) following single-dose ophthalmic delivery. Three eye washes (3 μL PBS each) were recovered from the lateral and medial canthi with 5-μL microcapillary tubes (Drummond Scientific Co., Broomhall, Pa., USA) after manual eyelid blinking (9). Pooled washes were diluted with acetonitrile/water (1:1) containing 0.1% formic acid and analyzed by LC/MS using an Xterra MS C18 column (2.1 mm×100 mm, 3.5-μm particle size) connected to a Waters 2695 HPLC solvent delivery system and a Waters Micromass ZQ mass spectrometer with positive electrospray ionization.


To study compound accumulation in systemic tissues, mouse blood, brain, kidney and liver were analyzed after 14 days of three-times daily topical dosing (0.1 nmol, 2 μL, 50 μM). Blood samples were collected from the left ventricle into K3 EDTA mini-tubes (Greiner, Kremsmunster, Austria) and centrifuged (28). The supernatant was extracted with an equal volume of ethyl acetate and the extract was dried with an air stream. Organs from treated and control mice were removed following ventricular perfusion with heparinized PBS (10 units/mL), weighed, mixed with acetic acid and water (100 μL/g tissue), and homogenized (29). Ethyl acetate (10 mL/g tissue) was added, samples were vortexed and centrifuged (3000 rpm for 15 min), and the ethyl acetate-containing supernatant was evaporated. Residues obtained from organic extracts of serum and organ homogenates were then reconstituted and analyzed by LC/MS as described above.


Mouse model of dry eye produced by lacrimal gland excision. A lacrimal gland excision (LGE) model of aqueous-deficient dry eye was adapted from a reported method (30). The extraorbital lacrimal gland was exposed on each side of wild-type female BALB/c mice (7-8 weeks of age) by 3-mm linear skin incisions. Lacrimal ducts were cauterized and the entire gland was removed bilaterally, avoiding facial vessels and nerves. Incisions were each closed with a single interrupted 6-0 silk suture. Orbital lacrimal tissue remained functional. Eyes with reduced corneal sensation (<5% of mice studied), as identified from neurotrophic corneal ulcers within 1 day of LGE, were excluded. Mice were randomized to receive either treatment (in both eyes) with CFTRact-K089 (0.1 nmol) or vehicle. Mice were treated three times daily (8 AM, 2 PM and 8 PM) for 2 weeks starting on Day 1 after LGE. Tear secretion and LG staining were performed immediately prior to, and one hour after the initial dose on day 4, 10 and 14 after LGE.


Statistics. Data are expressed as the mean±standard error of the mean (SEM). For direct comparisons between two means, the two-sided Students' t-test was used. For longitudinal measurements of tear secretion and LG scores in the dry eye prevention study, a linear mixed effects regression was used, adjusting for non-independence of measurements taken on the same eye and on both eyes of the same animal. Analysis was conducted in R v.3.2 for Mac (R Foundation for Statistical Computing, Vienna, Austria), using packages lme4 and robustlmm.


Characterization of small-molecule CFTR activators A cell-based functional high-throughput screen of 120,000 compounds at 10 μM identified 20 chemical classes of small-molecule activators of wild-type CFTR that produced >95% of maximal CFTR activation. The screen was done in FRT epithelial cells co-expressing human wild-type CFTR and a cytoplasmic YFP halide sensor in 96-well format (26, 31, 32). Secondary screening involved Isc measurement in CFTR-expressing FRT cells pretreated with submaximal forskolin (50 nM). Twenty-one compounds from eight chemical classes produced large increases in Isc at 1μ□ (>75% of maximal current produced by 20 μM forskolin). A summary of EC50 and Vmax values for each compound is provided in FIG. 7.


Structures of activators from the four most active chemical classes are shown in FIG. 2A, along with corresponding concentration-dependence data from Isc measurements. Each compound fully activated CFTR, as a high concentration of forskolin produced little further increase in Isc, and the increase in Isc was fully inhibited by a CFTR inhibitor, CFTRinh-172. EC50 values ranged from 20-350 nM (FIG. 2B). VX-770 showed relatively weak activity against wild-type CFTR (FIG. 2C). CFTRact-K032 and CFTRact-K089 showed incomplete CFTR activation (˜50% Vmax).


Compounds that directly target CFTR without causing elevation of cellular cAMP were sought to minimize potential off-target effects (FIG. 2D). Compounds producing elevations in intracellular cAMP (from Classes O, Q, and R), probably by phosphodiesterase inhibition, were excluded from further consideration. Nanomolar-potency compounds from Classes B, J and K, which did not increase cAMP, were selected for further characterization in living mice.


CFTR activators increase ocular surface chloride and fluid secretion in vivo. An open-circuit potential difference (PD) method developed in our lab was used to evaluate compound activity at the ocular surface in vivo, as depicted in FIG. 3A (21). Cl channel function was quantified by measuring PD during continuous perfusion of the ocular surface with a series of solutions that imposed a transepithelial Cl gradient and contained various channel agonists and/or inhibitors. The ocular surface was first perfused with isosmolar saline to record the baseline PD. Amiloride was then added to the perfusate, followed by exchange to a low Cl solution in which Cl with an impermeant anion, gluconate. These maneuvers allow for direct visualization of CFTR activation in response to addition of candidate CFTR activators.



FIG. 3B shows large hyperpolarizations following exposure to CFTRact-B074, CFTRact-J027 and CFTRact-K089, which were increased relatively little by forskolin and were reversed by CFTRinh-172. In comparison, VX-770 produced minimal changes in ocular surface PD (FIG. 3C). FIG. 3D summarizes PD data for indicated activators, with data for additional compounds reported in FIG. 7. Control studies done in CF mice lacking functional CFTR showed no changes in PD following addition of each of the compounds tested, with a representative curve shown for CFTRact-K032 (FIG. 3E).


CFTR activators were next tested for their efficacy in augmenting tear production in mice. Preliminary experiments identified a standard ophthalmic formulation (0.5% polysorbate) that increased compound solubility and duration-of-action. Following a single topical dose, the indirect CFTR activators cholera toxin, forskolin, and 3-isobutyl-1-methylxanthine (IBMX) substantially increased basal tear secretion at 30 min, but these effects were transient and undetectable after 2 hours (FIG. 4A). However, the direct CFTR activators identified here, CFTRact-B074, CFTRact-J027 and CFTRact-K089, increased tear fluid secretion by approximately two-fold for at least four hours. VX-770 produced little tear secretion (FIG. 4B). Repeated topical administrations (three times daily for up to 2 weeks) produced sustained tear hypersecretion without tachyphylaxis (FIG. 4C). CFTR activators did not increase tear fluid secretion in CF mice, demonstrating selective CFTR targeting (FIG. 4D).


Toxicity and pharmacokinetics Tear collection methods were validated by demonstrating reproducible recovery of tetramethylrhodamine dextran (3 kDa) from the ocular surface up to six hours after instillation. The pharmacokinetics of CFTRact-K089 at the ocular surface was determined by LC/MS of recovered tear washes. Following instillation of 0.1 nmol of CFTRact-K089 (2 μL, 50 μM) to the ocular surface, 7.9±2.4 pmol and 0.011±0.004 pmol were recovered at five min and six hours, respectively (FIG. 5A). The amount of CFTRact-K089 required for 50% CFTR activation (EC50˜250 nM) lies between the dashed lines, reflecting concentrations calculated from the highest and lowest reported normal tear volumes in mice (33, 34). The quantity of CFTRact-K089 recovered from tear fluid predicts therapeutic levels for at least six hours. Tear fluid pharmacokinetics of CFTRact-J027 could not be measured because the LC/MS sensitivity was low for this compound.


Following two weeks of three times per day dosing, the amounts of CFTRact-K089 and CFTRact-J027 were below the limits of detection (˜10 and ˜700 fmol, respectively) in mouse blood, brain, liver and kidney, indicating minimal systemic accumulation. The chronically treated mice showed no signs of ocular toxicity, as assessed by slit-lamp evaluation for conjunctival hyperemia, anterior chamber inflammation, and lens clarity. LG staining showed no corneal or conjunctival epithelial disruption (FIG. 5B). The compounds also produced no appreciable in vitro cytotoxicity in cell cultures at concentrations up to 100 μM (FIG. 5C).


CFTR activator prevents dry eye in a lacrimal gland excision model in mice. On the basis of its favorable tear film pharmacokinetics, CFTRact-K089 was selected for testing in a mouse model of aqueous-deficient dry eye produced by LGE. Following extraorbital LGE in BALB/c mice, CFTRact-K089-treated mice (0.1 nmol, administered three times daily) maintained basal tear volume, whereas tear volume from vehicle-treated mice was significantly reduced at all subsequent time-points (FIG. 6A), and for at least 30 days. Similar to what was reported in C57/bl6 mice (30), decreased lacrimation in vehicle-treated BALB/c mice was associated with progressive epithelial disruption from Day 0 to Day 14, shown pictorially (FIG. 6B top) and quantitatively (FIG. 6C). CFTRact-K089 not only restored tear secretion in LGE mice but remarkably prevented ocular surface epithelial disruption at all time points (FIG. 6B bottom, FIG. 6C). Vehicle-treated eyes developed diffuse, progressive corneal epitheliopathy (LG score increase of 7.3±0.6 by Day 14), whereas eyes treated with CFTRact-K089 had minimal LG staining at all time points (LG score change, −0.6±0.6).


It is understood that the examples and embodiments described herein are for illustrative purposes only and that various modifications or changes in light thereof will be suggested to persons skilled in the art and are to be included within the spirit and purview of this application and scope of the appended claims. All publications, patents, and patent applications cited herein are hereby incorporated by reference in their entirety for all purposes.


Example 3—Constipation II


Abstract. Background & Aims; Constipation is a common clinical problem that negatively impacts quality of life and is associated with significant health care costs. Activation of the cystic fibrosis transmembrane regulator (CFTR) chloride channel is the primary pathway that drives fluid secretion in the intestine, which maintains lubrication of luminal contents. We hypothesized that direct activation of CFTR would cause fluid secretion and reverse the excessive dehydration of stool found in constipation. Methods; A cell-based high-throughput screen was done for 120,000 drug-like, synthetic small molecules. Active compounds were characterized for mechanism of action and one lead compound was tested in a loperamide-induced constipation model in mice. Results; Several classes of novel CFTR activators were identified, one of which, the phenylquinoxalinone CFTRact-J027, fully activated CFTR chloride conductance with EC50˜200 nM, without causing elevation of cytoplasmic cAMP. Orally administered CFTRact-J027 normalized stool output and water content in a loperamide-induced mouse model of constipation with ED50˜0.5 mg/kg; CFTRact-J027 was without effect in cystic fibrosis mice lacking functional CFTR. Short-circuit current, fluid secretion and motility measurements in mouse intestine indicated a pro-secretory action of CFTRact-J027 without direct stimulation of intestinal motility. Oral administration of 10 mg/kg CFTRact-J027 showed minimal bioavailability, rapid hepatic metabolism and blood levels<200 nM, and without apparent toxicity after chronic administration. Conclusions; CFTRact-J027 or alternative small-molecule CFTR-targeted activators may be efficacious for the treatment of constipation.


Introduction.


Constipation is a common clinical complaint in adults and children that negatively impacts quality of life. The prevalence of chronic constipation has been estimated to be 15% in the US population, with annual health-care costs estimated at ˜7 billion dollars with >800 million dollars spent on laxatives [1,2]. The mainstay of constipation therapy includes laxatives that increase stool bulk, such as soluble fiber; create an osmotic load, such as polyethylene glycol; or stimulate intestinal contraction, such as the diphenylmethanes. There are also surface laxatives that soften stool such as docusate sodium and probiotics such as Lactobacillus paracasei [3], The FDA-approved drug linaclotide, a peptide agonist of the guanylate cyclase C receptor, acts by inhibiting visceral pain, stimulating intestinal motility, and increasing intestinal secretion [4, 5], A second approved drug, lubiprostone, a prostaglandin E analog, is thought to activate a putative enterocyte ClC-2 channel [6], though the mechanistic data are less clear. Despite the wide range of therapeutic options, there is a continued need for safe and effective drugs to treat constipation.


Intestinal fluid secretion involves active Cl secretion across the enterocyte epithelium through the basolateral membrane Na+/K+/2Cl cotransporter (NKCC1) and the luminal membrane cystic fibrosis transmembrane regulator (CFTR) Cl channel and Ca2+-activated Cl channel (CaCC). The electrochemical and osmotic forces created by Cl secretion drive Na+ and water secretion [7]. In cholera and Traveler's diarrhea CFTR is strongly activated by bacterial enterotoxins through elevation of intracellular cyclic nucleotides [8, 9], CFTR is an attractive target to increase intestinal fluid secretion in constipation as it is robustly expressed throughout the intestine and its activation strongly increases intestinal fluid secretion. An activator targeting CFTR directly is unlikely to produce the massive, uncontrolled intestinal fluid secretion seen in cholera because the enterotoxins in cholera act irreversibly to produce sustained elevation of cytoplasmic cAMP, which not only activates CFTR but also basolateral K+ channels, which increase the electrochemical driving force for Cl secretion; cholera enterotoxins also inhibit the luminal NHE3 Na+/H+ exchanger involved in intestinal fluid absorption [10, 11].


Motivated by these considerations and the continuing need for safe and effective drug therapy of constipation, here we report the identification and characterization of a nanomolar-potency, CFTR-targeted small-molecule activator, and provide proof of concept for its pro-secretory action in intestine and efficacy in constipation.


Methods.


Materials. High-throughput screening was done using a diverse collection of 120,000 drug-like synthetic compounds obtained from ChemDiv Inc. (San Diego, Calif., USA) and Asinex (Winston-Salem, N.C., USA). For structure-activity analysis, 600 commercially available analogs (ChemDiv Inc.) of active compounds identified in the primary screen were tested. Other chemicals were purchased from Sigma-Aldrich (St. Louis, Mo., USA) unless indicated otherwise.


CFTRact-J027 synthesis. To a solution of o-phenylenediamine (1 g, 9.24 mmol) in DMF (30 mL) was added potassium carbonate (2.5 g, 18.4 mmol) and benzyl bromide (0.73 mL, 6.2 mmol) then stirred overnight at ambient temperature. The reaction mixture was diluted with CH2Cl2, washed with water, dried over MgSO4 and concentrated under reduced pressure. The residue was purified by flash chromatography to give the intermediate N1-benzylbenzene-1,2-diamine as a brown liquid. 1H NMR (300 MHz, CDCl3): δ 7.45-7.31 (m, 5H), 6.86-6.69 (m, 4H), 4.35 (s, 2H), 3.50 (br, 3H); MS: m/z 199 (M+H). Then, a solution of the intermediate (400 mg, 2 mmol) and 5-nitroisatin (380 mg, 2 mmol) in acetic acid (5 mL) was refluxed for 2 h. The reaction mixture was cooled to room temperature and solvent removed under reduced pressure. The residue was dissolved with methanol and acetic acid was added to crystallize 3-(2-amino-5-nitrophenyl)-1-benzylquinoxalin-2(1H)-one (CFTRact-J027) as a yellow powder with >99% purity. 1H NMR (300 MHz, DMSO-d6): δ 9.15 (d, 1H, J=2.8 Hz), 8.07 (dd, 1H, J=2.7, 9.2 Hz), 7.97 (dd, 1H, J=1.2, 7.9 Hz), 7.82 (brs, 2H), 7.60-7.27 (m, 7H), 6.92 (d, 1H, J=9.2 Hz), 5.59 (brs, 2H); 13C NMR (75 MHz, DMSO-d6): δ 155.0, 154.6, 153.3, 136.3, 135.3, 132.8, 132.2, 131.0, 130.0, 129.5, 129.1, 127.7, 127.3, 126.8, 124.1, 116.1, 115.9, 115.4, 45.9; MS: m/z 373 (M+H).


Cell culture. Fischer Rat Thyroid (FRT) cells stably co-expressing human wild-type CFTR and the halide-sensitive yellow fluorescent protein (YFP)-H148Q were generated as previously described [12], Cells were cultured on plastic in Coon's-modified Ham's F12 medium supplemented with 10% fetal bovine serum, 2 mM L-glutamine, 100 units/ml penicillin, and 100 μg/ml streptomycin. For high-throughput screening, cells were plated in black 96-well microplates (Corning-Costar Corp., Corning, N.Y., USA) at a density of 20,000 cells per well. Screening was done 24-48 hours after plating.


High-throughput screening. Screening was carried out using a Beckman Coulter integrated system equipped with a liquid handling system and two FLUOstar fluorescence plate readers (BMG Labtechnologies, Durham, N.C., USA), each equipped with dual syringe pumps and 500±10 nm excitation and 535±15 nm emission filters (details in ref. 12). CFTR- and YFP-expressing FRT cells were grown at 37° C./5% CO2 for 24-48 hours after plating. At the time of assay, cells were washed three times with phosphate-buffered saline (PBS) and then incubated for 10 min with 60 μl of PBS containing test compounds (at 10 μM) and a low concentration of forskolin (125 nM). Each well was assayed individually for I influx in a plate reader by recording fluorescence continuously (200 ms per point) for 2 s (baseline) and then for 12 s after rapid (<1 s) addition of 165 μL of PBS in which 137 mM Cl was replaced by I. The initiate rate of I influx was computed by determined using exponential regression. All compound plates contained negative controls (DMSO vehicle) and positive controls (20 μM forskolin).


Short-circuit current measurement. Short-circuit current was measured in FRT cells stably expressing wild-type human CFTR cultured on porous filters as described [12], The basolateral solution contained 130 mM NaCl, 2.7 mM KCl, 1.5 mM KH2PO4, 1 mM CaCl2, 0.5 mM MgCl2, 10 mM glucose, and 10 mM Na-HEPES (pH 7.3, 37° C.). In the apical solution 65 mM NaCl was replaced by Na gluconate, and CaCl2 was increased to 2 mM, and the basolateral membrane was permeabilized with 250 μg/ml amphotericin B. Short-circuit current was measured in freshly harvested adult mouse colon at 37° C. using symmetrical Krebs-bicarbonate buffer.


cAMP assay. Intracellular cAMP activity was measured using a GloSensor luminescence assay (Promega Corp., Madison, Wis., USA). FRT null cells were stably transfected with the pGloSensor cAMP plasmid and plated onto white 96-well microplates and grown to confluence. Cells were washed three times with PBS and incubated with 5 μM CFTRact-J027 for 10 min in the absence and presence of 100 nM forskolin. cAMP was assayed according to the manufacturer's instructions.


Pharmacokinetics. All animal experiments were approved by UCSF Institutional Animal Care and Use Committee. Female CD1 mice were treated with 10 mg/kg CFTRact-J027 (saline containing 5% DMSO and 10% Kolliphor HS 15) either intraperitoneally (ip) or orally. Blood was collected at 15, 30, 60, 150, 240 and 360 min after treatment by orbital puncture and centrifuged at 5000 rpm for 15 min to separate plasma. Plasma samples (60 μL) were mixed with 300 μL acetonitrile and centrifuged at 13000 rpm for 20 min, and 90 μL of the supernatant was used for LC/MS. The solvent system consisted of a linear gradient from 5 to 95% acetonitrile over 16 min (0.2 m1/min flow). Mass spectra was acquired on a mass spectrometer (Waters 2695 and Micromass ZQ) using electrospray (+) ionization, mass ranging from 100 to 1500 Da, cone voltage 40 V. Calibration standards were prepared in plasma from untreated mice to which known amounts of CFTRact-J027 were added.


In vitro metabolic stability. CFTRact-J027 (5 μM) was incubated for specified times at 37° C. with mouse liver microsomes (1 mg protein/m1; Sigma-Aldrich) in potassium phosphate buffer (100 mM) containing 1 mM NADPH, as described [13], The mixture was then chilled on ice, and 0.5 ml of ice-cold ethyl acetate was added. Samples were centrifuged for 15 min at 3000 rpm, the supernatant evaporated to dryness, and the residue was dissolved in 100 μL mobile phase (acetonitrile:water, 3:1) for LC/MS and assayed as described above.


Murine model of constipation. Female CD1 mice (age 8-10 weeks) were administered loperamide (0.3 mg/kg, ip, Sigma-Aldrich) to produce constipation. Various amounts of CFTRact-J027 (0.1, 0.3, 1, 3 and 10 mg/kg) were given at the same time (for ip administration) or 1 h before (for oral administration) loperamide. Control mice were treated with vehicle only. Some mice were treated orally with lubiprostone (0.5 mg/kg, Sigma-Aldrich) or linaclotide (0.5 mg/kg, Toronto Research Chemicals Inc., Toronto, Ontario, Canada). After loperamide injection, mice were placed individually in metabolic cages with food and water provided ad libitum. Stool samples were collected for 3 h, and total stool weight and number of fecal pellets were quantified. To measure stool water content stool samples were dried at 80° C. for 24 h and water content was calculated as [wet weight-dry weight]/wet weight. Similar studies were done in cystic fibrosis (CF) mice (ΔF508 homozygous) lacking functional CFTR. Some studies were done using the chemically similar but inactive analog of CFTRact-J027, 3-(2-amino-5-nitrophenyl)-1-(methyl)-2(1H)-quinoxalinone.


In vivo intestinal transit and ex vivo intestinal contractility. Whole-gut transit time was determined using an orally administered marker (200 μL, 5% Evans Blue, 5% gum Arabic) and measuring the time of its appearance in stool. Mice were administered loperamide and CFTRact-J027 (10 mg/kg) or vehicle intraperitoneally at zero time. For ex vivo contractility measurements, mice were euthanized by avertin overdose (200 mg/kg, 2,2,2-tribromethanol, Sigma-Aldrich) and ileum and colon segments of ˜2 cm length were isolated and washed with Krebs-Henseleit buffer. The ends of the intestinal segments were tied, connected to a force transducer (Biopac Systems, Goleta, Calif., USA) and tissues were transferred to an organ chamber (Biopac Systems) containing Krebs-Henseleit buffer at 37° C. aerated with 95% O2, 5% CO2. Ileum and colon were stabilized for 60 min with resting tensions of 0.5 and 0.2 g respectively, and solutions were changed every 15 min. Effects of CFTRact-J027 on baseline and loperamide-suppressed isometric intestinal contractions were recorded.


In vivo intestinal secretion and absorption. Mice (wildtype or CF) were given access to 5% dextrose water but not solid food for 24 h before experiments. Mice were anesthetized with isoflurane and body temperature was maintained during surgery at 36-38° C. using a heating pad. A small abdominal incision was made to expose the small intestine, and closed mid-jejunal loops (length 2-3 cm) were isolated by sutures. Loops were injected with 100 μL vehicle alone or 100 μg CFTRact-J027 in vehicle. The abdominal incision was closed with sutures, and mice were allowed to recover from anesthesia. Intestinal loops were removed at 90 min and loop length and weight were measured to quantify fluid secretion. Intestinal absorption was measured in CF mice (to prevent secretion) as described above, except that the loops were removed at 0 or 30 min. Absorption was calculated as 1−(loop weight at 0 min−loop weight at 30 min)/loop weight at 0 min.


Chronic administration and toxicity studies. Mice were administered 10 mg/kg CFTRact-J027 or vehicle orally once a day for 7 d. One hour after the final dose mice were treated with loperamide (0.3 mg/kg, ip) and stool was collected for 3 h. In vivo toxicity was assessed in these mice by measuring lung wet/dry weight ratio, complete blood count (HEMAVET 950FS, Drew Scientific Inc., Florida, USA) and serum chemistry (Idexx Laboratories Inc., Sacramento, Calif., USA) 4 h after the last CFTRact-J027 dose. In vitro cytotoxicity was measured in FRT cells incubated with 25 μM CFTRact-J027 for 8 and 24 h. Cytotoxicity was measured by Alamar Blue assay according to the manufacturer's instructions (Invitrogen, Carlsbad, Calif., USA).


Statistical analysis. Experiments with two groups were analyzed with Student's t-test, when there are 3 groups or more analysis was made with one-way analysis of variance and post-hoc Newman-Keuls multiple comparisons test. P<0.05 was taken as statistically significant.


Results.


Identification and in vitro characterization of small-molecule CFTR activators. The goal was to identify a potent, CFTR-targeted activator with pro-secretory activity in intestine in order test its efficacy in a mouse model of constipation. FIG. 8A summarizes the project strategy. The compounds evaluated here included small molecules identified in prior CFTR activator/potentiator screens [14] and from a new screen of synthetic small molecules not tested previously. The most active compounds emerging from the screen, along with commercially available chemical analogs, were prioritized based on an initial mechanism of action study (assay of cAMP elevation), in vitro toxicity, pro-secretory action in mouse intestine, and efficacy in a mouse model of constipation. FIG. 8B shows the cell-based plate reader screening method in which the initial rate of iodide influx was measured in FRT cells stably expressing human wildtype CFTR and a YFP fluorescent halide sensor following extracellular iodide addition. A CFTR activator increases the initial slope of the fluorescence quenching curve.



FIG. 8C shows chemical structures of six classes of CFTR candidate activators identified from the screens. Based on the criteria listed above, we focused further studies on CFTRact-J027, a 3-phenyl-quinoxalinone with drug-like properties. CFTRact-J027 was synthesized in pure crystalline form in two steps (FIG. 8D).


Short-circuit current measurements in CFTR-expressing FRT cells showed that CFTRact-J027 fully activated CFTR (FIG. 9A), as the cAMP agonist forskolin produced no further increase in current, with an EC50˜200 nM (FIG. 9B). Interestingly, CFTRact-J027 was only a weak potentiator of ΔF508-CFTR, as studied in FRT cells expressing ΔF508-CFTR after overnight incubation with a corrector (FIG. 9C). Cl secretion in freshly isolated mouse colon showed a concentration-dependent increase in short-circuit current with EC50˜300 nM (FIG. 9D). The increase in current at high CFTRact-J027 was further increased by forskolin, which may be a consequence of activation of a basolateral membrane cAMP-sensitive K+ channel that increases the driving force for apical membrane Cl secretion. The increase in current was fully inhibited by a CFTR-selective inhibitor. FIG. 9E shows that CFTRact-J027 does not elevate cellular cAMP when added alone, and does not further increase cAMP when added together with forskolin, suggesting that CFTR activation involves a direct interaction mechanism rather than indirect action through cAMP elevation.


CFTRact-J027 normalizes stool output in a mouse model of constipation. CFTRact-J027 was studied in the well-established loperamide-induced mouse model of constipation in which stool weight, pellet number and water content were measured over 3 h following intraperitoneal loperamide administration (FIG. 10A). Intraperitoneal administration of CFTRact-J027 at 10 mg/kg normalized each of the stool parameters. CFTRact-J027 did not affect stool output or water content in control (non-loperamide-treated) mice. Importantly, CFTRact-J027 was without effect in cystic fibrosis mice lacking functional CFTR (FIG. 10B), nor was an inactive chemical analog of CFTRact-J027 effective in wildtype mice (FIG. 10C). These results support a CFTR-selective action of CFTRact-J027. Dose-response studies in mice showed an ED50 of 2 mg/kg in the loperamide model by ip administration of CFTRact-J027 (FIG. 10D).


Oral administration of 10 mg/kg CFTRact-J027 1 h prior to loperamide administration was also effective in normalizing stool output and water content in loperamide-treated mice, with no effect in control mice (FIG. 11A). The ED50 for oral administration was 0.5 mg/kg, substantially lower than that for ip administration (FIG. 11B). In parallel studies, oral administration of the approved drugs lubiprostone or linaclotide at 250-500 fold greater mg/kg doses than given to humans for treatment of constipation, were less effective in normalizing stool output, producing 50% and 35% of the maximal CFTRact-J027 response, respectively (FIG. 11C).


CFTRact-J027 actions on intestinal transit, motility and fluid transport. CFTRact-J027 action on intestinal transit and motility was measured in vivo and in isolated intestinal strips, respectively. Whole-gut transit time, as measured by appearance of a marker in the stool after bolus oral gavage at the time of ip loperamide and CFTRact-J027 administration, was normalized by CFTRact-J027 (FIG. 12A, left panel). CFTRact-J027 had no effect on whole-gut transit time in cystic fibrosis mice (right panel). In vitro measurements of intestinal contraction showed no effect of CFTRact-J027 added alone or in the presence of 10 μM loperamide in isolated mouse ileum and colon strips (FIG. 12B). CFTRact-J027 may thus increase intestinal transit in vivo by stimulating motility by secretion-induced stretch of the gut wall, without direct effect on intestinal smooth muscle.


To directly investigate the effects of CFTRact-J027 on intestinal fluid secretion and absorption, an in vivo closed-intestinal loop model was used. CFTRact-J027 was injected into closed, mid-jejunal loops and fluid accumulation was measured at 90 min. CFTRact-J027 produced a 140% increase in loop weight/length ratio, indicating fluid secretion into the intestinal lumen in wild-type mice (FIG. 12C, upper panel), but was without effect in cystic fibrosis mice (lower panel), supporting a CFTR-selective mechanism of action. A closed-loop model was also used to study CFTRact-J027 action on intestinal fluid absorption. Fluid without or with CFTRact-J027 was injected into closed, mid-jejunal loops of cystic fibrosis mice (to avoid confounding fluid secretion) and fluid absorption was measured at 30 min. CFTRact-J027 did not affect intestinal fluid absorption (FIG. 12D).


CFTRact-J027 pharmacology and toxicity in mice. The in vitro metabolic stability of CFTRact-J027 was measured by incubation with mouse liver microsomes in the presence of NADPH. CFTRact-J027 was rapidly metabolized with ˜21 min elimination half-life, with only 7% of the original compound remaining at 60 min (FIG. 13A).


Pharmacokinetics was measured in mice following bolus intraperitoneal or oral administration of 10 mg/kg CFTRact-J027. Following ip administration serum CFTRact-J027 concentration decreased with an elimination half-life of ˜16 min, and was undetectable at 150 min (FIG. 13B). Following oral administration serum CFTRact-J027 concentration reached 180 nM at 30 min and was undetectable at other time points (FIG. 13B).


Preliminary toxicological studies of CFTRact-J027 were done in cell cultures and mice. CFTRact-J027, at a concentration of 20 μM near its solubility limit, did not show cytotoxicity as measured by the Alamar Blue assay (FIG. 13C). In the 7-day treated mice, CFTRact-J027 did not affect the major serum chemistry and blood parameters (Table 1), nor did it change body weight or produce airway/lung fluid accumulation (FIG. 13D).


Last, to determine whether chronically administered CFTRact-J027 retained efficacy, mice were treated orally for 7 days with 10 mg/kg CFTRact-J027 or vehicle, and loperamide was given 1 h after the final dose. FIG. 13E shows that chronically administered CFTRact-J027 remained effective in normalizing stool output and water content following loperamide.









TABLE 1







Complete blood count and serum chemistries of mice treated


for 7 days with 10 mg/kg CFTRact-J027 or vehicle orally once


per day (mean ± S.E., 5 mice per group). Student's t-test.











Vehicle
CFTRact-J027
P value














Hemoglobin (g/dL)
13.3 ± 0.2 
12.8 ± 0.3
>0.05


Leukocytes (103/μL)
1.9 ± 0.3
 1.9 ± 0.5
>0.05


Thrombocytes (103/μL)
790 ± 109
900 ± 48
>0.05


Total protein (g/dL)
4.7 ± 0.2
 5.2 ± 0.1
>0.05


Albumin (g/dL)
2.6 ± 0.1
 2.9 ± 0.03
>0.05


Globulin (g/dL)
2.1 ± 0.1
 2.2 ± 0.1
>0.05


ALT (U/L)
52 ± 16
44 ± 6
>0.05


AST (U/L)
131 ± 17 
105 ± 11
>0.05


ALP (U/L)
 47 ± 8.5

53 ± 2.5

>0.05


Total bilirubin (mg/dL)
0.1 ± 0
0.1 ± 0 
>0.05


Glucose (mg/dL)
156 ± 22 
164 ± 6 
>0.05


Cholesterol (mg/dL)
121 ± 14 
121 ± 6 
>0.05


CK (U/L)
344 ± 85 
312 ± 62
>0.05


Sodium (mmol/L)
149 ± 2.3 
 151 ± 0.7
>0.05


Potassium (mmol/L)
5.0 ± 0.1
 4.4 ± 0.1
>0.05


Chloride (mmol/L)
113 ± 1 
115 ± 1 
>0.05


Calcium (mg/dL)
8.5 ± 0.2
 8.5 ± 0.04
>0.05


Phosphorus (mg/dL)
6.6 ± 0.9
 6.8 ± 0.3
>0.05


BUN (mg/dL)
15.3 ± 3  
18.4 ± 1.2
>0.05


Creatinine (mg/dL)
0.2 ± 0
0.2 ± 0 
>0.05


Bicarbonate (mmol/L)
15.3 ± 1.6 

16 ± 1.7

>0.05









Discussion.


We identified by high-throughput screening a nanomolar-affinity, small-molecule CFTR activator, CFTRact-J027, and demonstrated its pro-secretory action in mouse intestine and its efficacy in normalizing stool output in a loperamide-induced mouse model of constipation. Constipation remains a significant clinical problem in outpatient and hospitalized settings. Opioid-induced constipation is a common adverse effect in patients after surgery, undergoing chemotherapy and with chronic pain.


CFTR-targeted activation adds to the various mechanisms of action of anti-constipation therapeutics. It is notable that pure CFTR activation is able to produce a robust Cl current and fluid secretion response in the intestine, without causing global elevation of cyclic nucleotide concentration, direct stimulation of intestinal contractility, or alteration of intestinal fluid absorption. Linaclotide, a peptide agonist of the guanylate cyclase C receptor that increases intestinal cell cGMP concentration. Linaclotide inhibits activation of colonic sensory neurons and activates motor neurons, which reduces pain and increases intestinal smooth muscle contraction; in addition, elevation in cGMP concentration in enterocytes may activate CFTR and have a pro-secretory action [4, 5], A second approved drug, the prostaglandin E analog lubiprostone, is thought to activate a putative enterocyte ClC-2 channel [6], though the mechanistic data are less clear. Compared with these drugs, a pure CFTR activator has a single, well-validated mechanism of action and does not produce a global cyclic nucleotide response in multiple cell types. Of note, linaclotide and lubiprostone showed limited efficacy in clinical trials. Linaclotide was effective in ˜20% of chronic constipation patients of whom ˜5% also responded to placebo [15], and lubiprostone was effective in ˜13% of IBS-C patients of whom ˜7% responded to placebo [16], Based on our mouse data showing substantially greater efficacy of CFTRact-J027 compared to supramaximal doses of linaclotide or lubiprostone, we speculate that CFTR activators may have greater efficacy in clinical trials.


CFTRact-J027 is substantially more potent for activation of wildtype CFTR than VX-770 (ivacaftor), the FDA-approved drug for treatment of cystic fibrosis (CF) caused by certain CFTR gating mutations. In FRT cells expressing wild-type CFTR, short-circuit current measurement showed nearly full activation of CFTR by CFTRact-J027 at 3 μM whereas VX-770 maximally activated CFTR by only 15%. However, CFTRact-J027 was substantially less potent than ivacaftor as a ‘potentiator’ of defective chloride channel gating of the most common CF-causing mutation, ΔF508, which is not unexpected, as potentiator efficacy in CF is mutation-specific. In addition to its potential therapeutic utility for constipation, a small-molecule activator of wildtype CFTR may be useful for treatment of chronic obstructive pulmonary disease and bronchitis, asthma, cigarette smoke-induced lung dysfunction, dry eye and cholestatic liver disease [17-19], Substituted quinoxalinones were reported as selective antagonists of the membrane efflux transporter multiple-drug-resistance protein 1 [20], Quinoxalinones have also been reported to show anti-diabetic activity by stimulating insulin secretion in pancreatic INS-1 cells [21], and inhibitory activity against serine proteases for potential therapy of thrombotic disorders [22], Recently, quinoxalinones have been reported to inhibit aldose reductase [23], These reports suggest that the quinoxalinone scaffold has drug-like properties. Synthetically, quinoxalinone can be prepared in one to four steps from commercially available starting materials [24], which allows facile synthesis of targeted analogs.


In addition to compound-specific off-target actions, the potential side-effects profile of a CFTR activator could include pro-secretory activity in the airway/lungs and various glandular and other epithelia. Off-target effects for constipation therapy could be limited by oral administration of a CFTR activator with limited intestinal absorption and/or rapid systemic clearance to minimize systemic exposure. CFTRact-J027 when administered orally at a high dose (10 mg/kg) showed very low bioavailability with blood levels well below the EC50 for CFTR activation, which may be due to first-pass effect as evidenced its rapid in vitro metabolism in liver microsomes. CFTRact-J027 did not show significant in vitro cytotoxicity at a concentration of 25 μM, >100-fold greater than its EC50 for CFTR activation, or in vivo toxicity in mice in a 7-day study at a maximal efficacious dose that normalized stool output in the loperamide model of constipation. The potentially most significant off-target action, stimulation of lung/airway fluid secretion, was not seen as evidenced by normal lung water content in the 7-day treated mice. These limited toxicity studies offer proof of concept for application of a CFTR activator in constipation.


In summary, without wishing to be bound by theory, it is believed that the data herein provide evidence for the pro-secretory action of a CFTR activator in mouse intestine and proof of concept for its use in treatment of various types of constipation, which could include opioid-induced constipation, chronic idiopathic constipation, and irritable bowel syndrome with constipation predominance.


REFERENCES (EXAMPLE 3)

[1], Pinto Sanchez M I, Bercik P. Epidemiology and burden of chronic constipation. Canadian Journal of Gastroenterology 2011, 25(Suppl B): 11B-15B; [2], Mugie S M, Di Lorenzo C, Benninga M A. Constipation in childhood. Nature Reviews Gastroenterology and Hepatology 2011, 8(9):502-511; [3], Menees S, Saad R, Chey W D. Agents that act luminally to treat diarrhoea and constipation. Nature Reviews Gastroenterology and Hepatology 2012, 9(11):661-674; [4], Castro J, Harrington A M, Hughes P A et al. Linaclotide inhibits colonic nociceptors and relieves abdominal pain via guanylate cyclase-C and extracellular cyclic guanosine 3′,5′-monophosphate. Gastroenterology 2013, 145(6): 1334-1346; [5], Busby R W, Bryant A P, Bartolini W P et al. Linaclotide, through activation of guanylate cyclase C, acts locally in the gastrointestinal tract to elicit enhanced intestinal secretion and transit. European Journal of Pharmacology 2010, 649(1-3):328-335; [6], Fei G, Raehal K, Liu S et al. Lubiprostone reverses the inhibitory action of morphine on intestinal secretion in Guinea pig and mouse. Journal of Pharmacology and Experimental Therapeutics 2010, 334(1):333-340; [7], Thiagarajah J R, Donowitz M, Verkman A S. Secretory diarrhoea: mechanisms and emerging therapies. Nature Reviews Gastroenterology and Hepatology 2015, 12(8):446-457; [8], Field M, Fromm D, Al-Awqati Q et al. Effect of cholera enterotoxin on ion transport across isolated ileal mucosa. The Journal of Clinical Investigation 1972, 51(4):796-804; [9], Rao M C, Guandalini S, Smith P L et al. Mode of action of heat-stable Escherichia coli enterotoxin Tissue and subcellular specificities and role of cyclic GMP. Biochimica et Biophysica Acta (BBA)—General Subjects 1980, 632(1):35-46; [10], Subramanya S B, Rajendran V M, Srinivasan P et al. Differential regulation of cholera toxin-inhibited Na—H exchange isoforms by butyrate in rat ileum. American Journal of Physiology—Gastrointestinal and Liver Physiology 2007, 293(4):G857-G863; [11], Hecht G, Hodges K, Gill R K et al. Differential regulation of Na+/H+ exchange isoform activities by enteropathogenic E. coli in human intestinal epithelial cells. American Journal of Physiology—Gastrointestinal and Liver Physiology 2004, 287(2):G370-G378; [12], Galietta L J V, Springsteel M F, Eda M et al. Novel CFTR chloride channel activators identified by screening of combinatorial libraries based on flavone and benzoquinolizinium lead compounds. Journal of Biological Chemistry 2001, 276(23): 19723-19728; [13], Esteva-Font C, Cil O, Phuan P W et al. Diuresis and reduced urinary osmolality in rats produced by small-molecule UT-A-selective urea transport inhibitors. The FASEB Journal 2014, 28(9):3878-3890; [14], Ma T, Vetrivel L, Yang H et al. High-affinity activators of cystic fibrosis transmembrane conductance regulator (CFTR) chloride conductance identified by high-throughput screening. Journal of Biological Chemistry 2002, 277(40):37235-37241; [15], Lembo A J, Schneier H A, Shiff S J et al. Two randomized trials of linaclotide for chronic constipation. New England Journal of Medicine 2011, 365(6):527-536; [16], Website: www.amitizahcp.com; [17], Gras D, Chanez P, Vachier I et al. Bronchial epithelium as a target for innovative treatments in asthma. Pharmacology & Therapeutics 2013, 140(3):290-305; [18], Srivastava A. Progressive familial intrahepatic cholestasis. Journal of Clinical and Experimental Hepatology 2014, 4(1):25-36; [19], Levin M H, Verkman A S. CFTR-regulated chloride transport at the ocular surface in living mice measured by potential differences. Investigative Ophthalmology & Visual Science 2005, 46(4): 1428-1434; [20], Lawrence D S, Copper J E, Smith C D. Structure-activity studies of substituted quinoxalinones as multiple-drug-resistance antagonists. Journal of Medicinal Chemistry 2001, 44(4):594-601; [21], Botton G, Valeur E, Kergoat M et al. Preparation of quinoxalinone derivatives as insulin secretion stimulators useful for the treatment of diabetes. PCT Int Appl 2009, WO 2009109258 A1 20090911 (patent); [22], Dudley D A, Edmunds J J. Preparation of quinoxalinones as serine protease inhibitors for treatment of thrombotic disorders. PCT Int Appl 1999:WO 9950254 A9950251 19991007 (patent); [23], Qin X, Hao X, Han H et al. Design and Synthesis of potent and multifunctional aldose reductase inhibitors based on auinoxalinones. Journal of Medicinal Chemistry 2015, 58(3): 1254-1267; [24], Shaw A D, Denning C R, Hulme C. One-pot two-step synthesis of quinoxalinones and diazepinones via a tandem oxidative amidation-deprotection-cyclization sequence. Synthesis 2013, 45(4):459-462.


Example 4—Dry Eye—II

Abbreviations: CFTR, cystic fibrosis transmembrane conductance regulator; cAMP, cyclic adenosine monophosphate; ENaC, epithelial sodium channel; YFP, yellow fluorescent protein; CF, cystic fibrosis; FRT cells, Fischer rat thyroid cells; ISC, short-circuit current; PD, potential difference; IBMX, 3-isobutyl-1-methylxanthine; fsk, forskolin; LC/MS, liquid chromatography/mass spectroscopy; LG, lissamine green; LGE, lacrimal gland excision.


Abstract. Dry eye disorders, including Sjögren's syndrome, constitute a common problem in the aging population with limited effective therapeutic options available. The cAMP-activated Cl− channel CFTR (cystic fibrosis transmembrane conductance regulator) is a major pro-secretory chloride channel at the ocular surface. Here, we investigated whether compounds that target CFTR can correct the abnormal tear film in dry eye. Small-molecule activators of human wild-type CFTR identified by high-throughput screening were evaluated in cell culture and in vivo assays to select compounds that stimulate Cl-driven fluid secretion across the ocular surface in mice. An aminophenyl-1,3,5-triazine, CFTRact-K089, fully activated CFTR in cell cultures with EC50˜250 nM and produced a ˜8.5 mV hyperpolarization in ocular surface potential difference. When delivered topically, CFTRact-K089 doubled basal tear secretion for four hours and had no effect in CF mice. CFTRact-K089 showed sustained tear film bioavailability without detectable systemic absorption. In a mouse model of aqueous-deficient dry eye produced by lacrimal gland excision, topical administration of 0.1 nmol CFTRact-K089 three times daily restored tear secretion to basal levels and fully prevented the corneal epithelial disruption seen in vehicle-treated controls. Our results support potential utility of CFTR-targeted activators as a novel pro-secretory treatment for dry eye.


Introduction.


Dry eye is a heterogeneous group of disorders with common features of reduced tear volume and tear fluid hyperosmolarity, which lead to inflammation at the ocular surface. The clinical consequences, which include eye discomfort and visual disturbance, represent a major public health concern in an aging population. Dry eye affects up to one-third of the global population (1), including five million Americans age 50 and over (2, 3). The economic burden of dry eye is substantial, with direct annual health care costs estimated at $3.84 billion dollars in the United States (4).


Ninety-four percent of surveyed ophthalmologists believe that additional treatments are needed for moderate-to-severe dry eye (7).


The ocular surface is a collection of anatomically continuous epithelial and glandular tissues that are functionally linked to maintain the tear film (8). While lacrimation contributes the bulk of reflex tearing, the cornea and conjunctiva regulate basal tear volume and composition. The principal determinants of water movement across the ocular surface into the tear film include apical chloride (Cl) secretion through cAMP- and calcium (Ca2+)-dependent Cl transporters, and sodium (Na+) absorption largely though the epithelial Na+ channel (ENaC).


The cystic fibrosis transmembrane conductance regulator (CFTR) is a cAMP-activated Cl channel expressed in some secretory epithelial cells, including those in cornea and conjunctiva (14-16). We found substantial capacity for active CFTR-facilitated Cl at the ocular surface in mice (21, 22), as subsequently shown in rat conjunctiva (23), providing a rational basis for investigation of CFTR activators as a pro-secretory strategy for dry eye. The only clinically approved CFTR activator, VX-770 (ivacaftor), is indicated for potentiating the channel gating of certain CFTR mutants causing CF, but only weakly activates wild-type CFTR (24, 25).


Here, we evaluated and prioritized novel small-molecule activators of wild-type CFTR identified by high-throughput screening as potential topical therapy for dry eye, with the research strategy summarized in FIG. 1. The goal was to improve upon our previously identified CFTR activators (26), which lack suitable potency and chemical properties to be advanced to clinical development, and to demonstrate efficacy of newly identified CFTR activator(s) in a mouse model of dry eye.


Materials and Methods.


Mice. Wild-type (WT) and CF (homozygous ΔF508-CFTR mutant) mice in a CD1 genetic background were bred at the University of California San Francisco (UCSF) Animal Facility. Mice aged 8 to 12 weeks (25 to 35 g) were used. Female BALB/c mice (7-8 weeks old) were purchased from the Harlan Laboratory (Livermore, Calif., USA). Animal protocols were approved by the UCSF Institutional Animal Care and Use Committee and were in compliance with the ARVO Statement for the Use of Animals in Ophthalmic and Vision Research.


Short-circuit current. Fischer rat thyroid (FRT) cells stably expressing wild-type human CFTR were cultured on Snapwell inserts (Corning Costar, Corning N.Y., USA) for short-circuit current (Isc) measurements. After 6-9 days in culture, when the transepithelial resistance was >1000 Ω/cm2, the inserts were mounted in an Ussing chamber system (World Precision Instruments, Sarasota, Fla., USA). The basolateral solution contained 130 mM NaCl, 2.7 mM KCl, 1.5 mM KH2PO4, 1 mM CaCl2, 0.5 mM MgCl2, 10 mM glucose, and 10 mM Na-HEPES (pH 7.3). In the apical bathing solution, 65 mM NaCl was replaced by Na gluconate, and CaCl2 was increased to 2 mM. Both solutions were bubbled with air and maintained at 37° C. The basolateral membrane was permeabilized with 250 μg/ml amphotericin B (26, 27). Hemichambers were connected to a DVC-1000 voltage clamp via Ag/AgCl electrodes and 3 M KCl agar bridges for Isc recording.


cAMP and cytotoxicity assays. Intracellular cAMP activity was measured using a GloSensor luminescence assay (Promega Corp., Madison, Wis., USA). FRT cells stably transfected with the pGloSensor cAMP plasmid (Promega Corp.) were cultured in white 96-well microplates (Corning Costar) overnight. Cells were then washed three times with PBS and incubated with 5 μM test compound for 10 min in the absence and presence of 100 nM forskolin. To assay cytotoxicity, FRT cells were cultured overnight in black 96-well Costar microplate wells and incubated with test compounds at up to 100 μM (the maximum solubility in PBS) for 1 or 24 h. Cytotoxicity was measured by Alamar Blue assay according to the manufacturer's instructions (Invitrogen, Carlsbad, Calif., USA).


Ocular surface potential difference measurements. Open-circuit transepithelial PD were measured continuously in anesthetized mice in response to serial perfusions of different solutions over the ocular surface, as described (21). Mice were anesthetized with Avertin (2,2,2-tribromoethanol, 125 mg/kg intraperitoneal, Sigma-Aldrich, St. Louis, Mo., USA), and core temperature was maintained at 37° C. using a heating pad. Eyes were oriented with the cornea and conjunctiva facing upward and exposed by retracting the eyelid with cross-action forceps. Solutions were isosmolar (320±10 mOsM; compositions provided in ref. 21) and contained 10 μM indomethacin to prevent CFTR activation by prostaglandins. The ocular surface was perfused at 6 mL/min through plastic tubing using a multireservoir gravity pinch-valve system (ALA Scientific, Westbury, N.Y., USA) and variable-flow peristaltic pump (medium flow model; Fisher Scientific, Fair Lawn, N.J., USA). A probe catheter was fixed 1 mm above the cornea using a micropositioner and a suction cannula was positioned 3 mm from the orbit. The measuring electrode was in contact to the perfusion catheter and connected to a high-impedance voltmeter (IsoMilivolt Meter; WPI). The reference electrode was grounded via a winged 21-gauge needle filled with isosmolar saline, and inserted subcutaneously in the abdomen. Measuring and reference electrodes consisted of Ag/AgCl with 3 M KCl agar bridges.


Tear secretion. To measure unstimulated tear production, phenol red threads (Zone-Quick, Oasis Medical, Glendora, Calif., USA) were placed for 10 s in the lateral canthi of isofluorane-anesthetized mice using jewelers' forceps. Tear volume was measured as the length of thread wetting, as visualized under a dissecting microscope. Serial measurements were used to evaluate compound pharmacodynamics after application of 2-μL drops of compound formulations (50-100 μM compound in PBS containing 0.5% polysorbate and 0.5% DMSO) comparing to vehicle.


Lissamine green staining. To assess corneal epithelial disruption, 5 μL of lissamine green (LG) dye (1%) was applied to the ocular surface of isofluorane-anesthetized mice. Photographs of the eye were taken using a Nikon Digital camera adapted to an Olympus Zoom Stereo Microscope (Olympus, Center Valley, Pa., USA). Each corneal quadrant was scored on a 3-point scale by one blinded, trained observer, with the extent of staining in each quadrant classified as: 0, no staining; 1, sporadic (involving <25% of the total surface) staining; grade 2, diffuse punctate staining (25-75%); and grade 3, coalesced punctate staining (≥75%). The total grade is reported as the sum of scores from all four quadrants, ranging from 0 to 12.


Pharmacokinetics and tissue distribution. To determine the residence time of CFTR activators in the pre-ocular mouse tear film, compounds were recovered for liquid chromatography/mass spectroscopy (LC/MS) following single-dose ophthalmic delivery. Three eye washes (3 μL PBS each) were recovered from the lateral and medial canthi with 5-μL microcapillary tubes (Drummond Scientific Co., Broomhall, Pa., USA) after manual eyelid blinking (9). Pooled washes were diluted with acetonitrile/water (1:1) containing 0.1% formic acid and analyzed by LC/MS using an Xterra MS C18 column (2.1 mm×100 mm, 3.5-μm particle size) connected to a Waters 2695 HPLC solvent delivery system and a Waters Micromass ZQ mass spectrometer with positive electrospray ionization.


To study compound accumulation in systemic tissues, mouse blood, brain, kidney and liver were analyzed after 14 days of three-times daily topical dosing (0.1 nmol, 2 μL, 50 μM). Blood samples were collected from the left ventricle into K3 EDTA mini-tubes (Greiner, Kremsmunster, Austria) and centrifuged (28). The supernatant was extracted with an equal volume of ethyl acetate and the extract was dried with an air stream. Organs from treated and control mice were removed following ventricular perfusion with heparinized PBS (10 units/mL), weighed, mixed with acetic acid and water (100 μL/g tissue), and homogenized (29). Ethyl acetate (10 mL/g tissue) was added, samples were vortexed and centrifuged (3000 rpm for 15 min), and the ethyl acetate-containing supernatant was evaporated. Residues obtained from organic extracts of serum and organ homogenates were then reconstituted and analyzed by LC/MS as described above.


Mouse model of dry eye produced by lacrimal gland excision. A lacrimal gland excision (LGE) model of aqueous-deficient dry eye was adapted from a reported method (30). The extraorbital lacrimal gland was exposed on each side of wild-type female BALB/c mice (7-8 weeks of age) by 3-mm linear skin incisions. Lacrimal ducts were cauterized and the entire gland was removed bilaterally, avoiding facial vessels and nerves. Incisions were each closed with a single interrupted 6-0 silk suture. Orbital lacrimal tissue remained functional. Eyes with reduced corneal sensation (<5% of mice studied), as identified from neurotrophic corneal ulcers within 1 day of LGE, were excluded. Mice were randomized to receive either treatment (in both eyes) with CFTRact-K089 (0.1 nmol) or vehicle. Mice were treated three times daily (8 AM, 2 PM and 8 PM) for 2 weeks starting on Day 1 after LGE. Tear secretion and LG staining were performed immediately prior to, and one hour after the initial dose on day 4, 10 and 14 after LGE.


Statistics. Data are expressed as the mean±standard error of the mean (SEM). For direct comparisons between two means, the two-sided Students' t-test was used. For longitudinal measurements of tear secretion and LG scores in the dry eye prevention study, a linear mixed effects regression was used, adjusting for non-independence of measurements taken on the same eye and on both eyes of the same animal. Analysis was conducted in R v.3.2 for Mac (R Foundation for Statistical Computing, Vienna, Austria), using packages lme4 and robustlmm.


Results.


Characterization of small-molecule CFTR activators. A cell-based functional high-throughput screen of 120,000 compounds at 10 μM identified 20 chemical classes of small-molecule activators of wild-type CFTR that produced >95% of maximal CFTR activation. The screen was done in FRT epithelial cells co-expressing human wild-type CFTR and a cytoplasmic YFP halide sensor in 96-well format (26, 31, 32). Secondary screening involved Isc measurement in CFTR-expressing FRT cells pretreated with submaximal forskolin (50 nM). Twenty-one compounds from eight chemical classes produced large increases in Isc at 1μ□ (≥75% of maximal current produced by 20 μM forskolin). A summary of EC50 and Vmax values for each compound is provided in FIG. 7.


Structures of activators from the four most active chemical classes are shown in FIG. 2A, along with corresponding concentration-dependence data from Isc measurements. Each compound fully activated CFTR, as a high concentration of forskolin produced little further increase in Isc, and the increase in Isc was fully inhibited by a CFTR inhibitor, CFTRinh-172. EC50 values ranged from 20-350 nM (FIG. 2B). VX-770 showed relatively weak activity against wild-type CFTR (FIG. 2C). CFTRact-K032 and CFTRact-K089 had lower potency and showed less CFTR activation (˜50% V max).


Compounds that directly target CFTR without causing elevation of cellular cAMP were sought to minimize potential off-target effects (FIG. 2D). Compounds producing elevations in intracellular cAMP (from Classes O, Q, and R), probably by phosphodiesterase inhibition, were excluded from further consideration. Nanomolar-potency compounds from Classes B, J and K, which did not increase cAMP, were selected for further characterization in living mice.


CFTR activators increase ocular surface chloride and fluid secretion in vivo. An open-circuit potential difference (PD) method developed in our lab was used to evaluate compound activity at the ocular surface in vivo, as depicted in FIG. 3A (21). Cl channel function was quantified by measuring PD during continuous perfusion of the ocular surface with a series of solutions that imposed a transepithelial Cl gradient and contained various channel agonists and/or inhibitors. The ocular surface was first perfused with isosmolar saline to record the baseline PD. Amiloride was then added to the perfusate, followed by exchange to a low Cl solution in which Cl with an impermeant anion, gluconate. These maneuvers allow for direct visualization of CFTR activation in response to addition of candidate CFTR activators.



FIG. 3B shows large hyperpolarizations following exposure to CFTRact-B074, CFTRact-J027 and CFTRact-K089, which were increased relatively little by forskolin and were reversed by CFTRinh-172. In comparison, VX-770 produced minimal changes in ocular surface PD (FIG. 3C). FIG. 3D summarizes PD data for indicated activators, with data for additional compounds reported in FIG. 7. Control studies done in CF mice lacking functional CFTR showed no changes in PD following addition of each of the compounds tested, with a representative curve shown for CFTRact-K032 (FIG. 3E).


CFTR activators were next tested for their efficacy in augmenting tear production in mice. Preliminary experiments identified a standard ophthalmic formulation (0.5% polysorbate) that increased compound solubility and duration-of-action. Following a single topical dose, the indirect CFTR activators cholera toxin, forskolin, and 3-isobutyl-1-methylxanthine (IBMX) substantially increased basal tear secretion at 30 min, but these effects were transient and undetectable after 2 hours (FIG. 4A). However, the direct CFTR activators identified here, CFTRact-B074, CFTRact-J027 and CFTRact-K089, increased tear fluid secretion by approximately two-fold for at least four hours. VX-770 produced little tear secretion (FIG. 4B). Repeated topical administrations (three times daily for up to 2 weeks) produced sustained tear hypersecretion without tachyphylaxis (FIG. 4C). CFTR activators did not increase tear fluid secretion in CF mice, demonstrating selective CFTR targeting (FIG. 4D).


Toxicity and pharmacokinetics. Tear collection methods were validated by demonstrating reproducible recovery of tetramethylrhodamine dextran (3 kDa) from the ocular surface up to six hours after instillation. The pharmacokinetics of CFTRact-K089 at the ocular surface was determined by LC/MS of recovered tear washes. Following instillation of 0.1 nmol of CFTRact-K089 (2 μL, 50 μM) to the ocular surface, 7.9±2.4 pmol and 0.011±0.004 pmol were recovered at five min and six hours, respectively (FIG. 5A). The amount of CFTRact-K089 required for 50% CFTR activation (EC50˜250 nM) lies between the dashed lines, reflecting concentrations calculated from the highest and lowest reported normal tear volumes in mice (33, 34). The quantity of CFTRact-K089 recovered from tear fluid predicts therapeutic levels for at least six hours. Tear fluid pharmacokinetics of CFTRact-J027 could not be measured because the LC/MS sensitivity was low for this compound.


Following two weeks of three times per day dosing, the amounts of CFTRact-K089 and CFTRact-J027 were below the limits of detection (˜10 and ˜700 fmol, respectively) in mouse blood, brain, liver and kidney, indicating minimal systemic accumulation. The chronically treated mice showed no signs of ocular toxicity, as assessed by slit-lamp evaluation for conjunctival hyperemia, anterior chamber inflammation, and lens clarity. LG staining showed no corneal or conjunctival epithelial disruption (FIG. 5B). The compounds also produced no appreciable in vitro cytotoxicity in cell cultures at concentrations up to 100 μM (FIG. 5C).


CFTR activator prevents dry eye in a lacrimal gland excision model in mice. On the basis of its favorable tear film pharmacokinetics, CFTRact-K089 was selected for testing in a mouse model of aqueous-deficient dry eye produced by LGE. Following extraorbital LGE in BALB/c mice, CFTRact-K089-treated mice (0.1 nmol, administered three times daily) maintained basal tear volume, whereas tear volume from vehicle-treated mice was significantly reduced at all subsequent time-points (FIG. 6A), and for at least 30 days. Similar to what was reported in C57/bl6 mice (30), decreased lacrimation in vehicle-treated BALB/c mice was associated with progressive epithelial disruption from Day 0 to Day 14, shown pictorially (FIG. 6B top) and quantitatively (FIG. 6C). CFTRact-K089 not only restored tear secretion in LGE mice but remarkably prevented ocular surface epithelial disruption at all time points (FIG. 6B). Vehicle-treated eyes developed diffuse, progressive corneal epitheliopathy (LG score increase of 7.3±0.6 by Day 14), whereas eyes treated with CFTRact-K089 had minimal LG staining at all time points (LG score change, −0.6±0.6).


Discussion.


A goal of this study was to investigate the potential utility of small-molecule activators of CFTR for dry eye therapy. After several prior development failures, dry eye remains an unmet need in ocular disease. In dry eye disorders, tear film hyperosmolarity stimulates pro-inflammatory signaling, secretion of cytokines and metalloproteinases, and disruption of corneal epithelial cell integrity (35-38). By minimizing tear film hyperosmolarity, CFTR activation is predicted to prevent these downstream ocular surface changes.


We identified small-molecule CFTR activators by high-throughput screening that produced sustained Cl-driven aqueous fluid secretion across the ocular surface by a mechanism involving direct CFTR activation rather than upstream cAMP signaling. The rationale to choose compounds that activate CFTR directly was to minimize potential off-target effects of generalized cAMP stimulation and to reduce the likelihood of tachyphylaxis for compounds targeting signaling receptors. These compounds had low-nanomolar EC50 for activation of human CFTR in vitro and produced full activation at higher concentrations. Large CFTR-dependent PD hyperpolarizations and tear hypersecretion were demonstrated in mice. Substantial compound activities in mice and humans will facilitate translation of data here to humans.


We found that CFTRact-K089 restored tear secretion and prevented epithelial disruption in an experimental mouse model of lacrimal insufficiency. CFTR activators may be particularly suited for disorders of the lacrimal gland, such as primary Sjögren's syndrome, by stimulating fluid transport across the intact corneal and conjunctival epithelia. CFTR activators probably exert their major pro-secretory effect at the ocular surface, although there is indirect for CFTR expression and function in lacrimal gland (39-42). Direct stimulation of lacrimal secretion is unlikely in the studies here because of minimal compound penetration to lacrimal tissues following topical delivery, and the demonstrated compound efficacy in a model of lacrimal insufficiency. At the ocular surface, the conjunctiva probably contributes the bulk of fluid secretion given its much larger surface area compared to cornea (43).


Alternative pro-secretory therapies targeting different ocular surface ion channels have been considered. The only FDA-approved CFTR activator, VX-770, was developed as a “potentiator” to treat CF by correcting the channel gating of certain CFTR mutations (44). However, VX-770 showed relatively little activity against wild-type CFTR in cell cultures and in mice in vivo. Chronic application of VX-770 may also diminish CFTR functional expression (24) and cause cataracts (seen in juvenile rats; ref. 42), which is likely an off-target effect because CFTR is not expressed in lens.


CFTRact-K089 and CFTRact-J027 showed favorable pharmacodynamics and could be conveniently administered topically several times daily in a standard ophthalmic formulation.


In conclusion, without wishing to be bound by theory, it is believed that the efficacy of CFTRact-K089 in a clinically relevant mouse model of aqueous-deficient dry eye disease provides proof-of-principle for topical, pro-secretory CFTR activator therapy to restore basal tear secretion and prevent ocular surface pathology. Compared with immunosuppressive approaches, CFTR activation has the advantage of addressing an early event in dry eye pathogenesis. Our data thus support the development potential of CFTR activators as first-in-class dry eye therapy.


REFERENCES (EXAMPLE 4)

[1], The definition and definition of dry eye disease: report of the Definition and Classification Subcommittee of the International Dry Eye Workshop 2007 (DEWS) (2007). Ocul. Surf. 5, 65-204; [2], Schaumberg, D. A., Dana, R., Buring, J. E., and Sullivan, D. A. (2009). Prevalence of dry eye disease among US men: estimates from the Physicians' Health Studies. Arch. Ophthalmol. 127, 763-768; [3], Schaumberg, D. A., Sullivan, D. A., Buring, J. E., and Dana, M. R. (2003). Prevalence of dry eye syndrome among US women. Am. J. Ophthalmol. 136, 318-326; [4], Yu, J., Asche, C. V., and Fairchild, C. J. (2011). The economic burden of dry eye disease in the United States: a decision tree analysis. Cornea 30, 379-387; [5], Alves, M., Foseca, E. C., Alves, M. F., Malki, L. T., Arruda, G. V., Reinach, P. S., and Rocha, E. M. (2013). Dry eye disease treatment: a systematic review of published trials and critical appraisal of therapeutic strategies. Ocul. Surf. 11, 181-192; [6], Sheppard, J. 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A CFTR potentiator in patients with cystic fibrosis and the G551D mutation. N. Engl. J. Med. 365, 1663-1672; [26], Ma, T., Vetrivel, L., Yang, E L, Pedemonte, N., Zegarra-Moran, O., Galietta, L. J., and Verkman, A. S. (2002). High-affinity activators of CFTR chloride conductance identified by high-throughput screening. J. Biol. Chem. 277, 37235-37241; [27], Galietta, L. J., Springsteel, M. F., Eda, M., Niedzinski, E. J., By, K., Haddadin, M. J., Kurth, M. J., Nantz, M. H., and Verkman, A. S. (2001). Novel CFTR chloride channel activators identified by screening of combinatorial libraries based on flavone and benzoquinolizinium lead compounds. J. Biol. Chem. 276, 19723-19728; [28], Esteva-Font, C., Cil, O., Phuan, P. W., Tao, S., Lee, S., Anderson, M. O., and Verkman, A. S. (2014) Diuresis and reduced urinary osmolality in rats produced by small-molecule UT-A-selective urea transport inhibitors. FASEB J. 28, 3878-3890; [29], Yao C, Anderson, M. O., Zhang J., Yang B., Phuan P. 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Ophthalmol. Vis. Sci. 40, 1261-1265; [34], Villareal, A. L., Farley, W., and Pflugfelder, S. C. (2006). Effect of topical ophthalmic epinastine and olopatadine on tear volume in mice. Eye Contact Lens 32, 272-276; [35], Lemp, M. A., Bron, A., Baudouin, C., Benitez Del Castillo, J., Geffen, D., Tauber, J., Foulks, G., Pepose, J. and Sullivan, B. D. (2011). Tear osmolarity in the diagnosis and management of dry eye disease. Am. J. Ophthalmol. 151, 792-798; [36], Luo, L., Li, D. Q., Corrales, R. M., and Pflugfelder, S. C. (2005). Hyperosmolar saline is a proinflammatory stress on the mouse ocular surface. Eye Contact Lens 31, 186-193; [37], Liu, H., Begley, C., Chen, M., Bradley, A., Bonanno, J., McNamara, N., Nelson, J., and Simpson, T. (2009). A link between tear instability and hyperosmolarity in dry eye. Invest. Ophthalmol. Vis. Sci. 50, 3671-3679; [38], Gilbard, J. P., Carter, J., Sang, D., Refojo, M., Hanninen, L. and Kenyon, K. R. (1984). Morphologic effect of hyperosmolarity on rabbit corneal epithelium. Ophthalmology 91, 1205-1212; [39], Rosemary, R., Evans, M., Cuthbert, A., MacVinish, J. L., Foster, D., Anderson, J., and Colledge, W. H. (1993). Nature Genetics 4, 35-41; [40], Lu, M. and Ding, C. (2012). CFTR-mediated Cl(−) transport in the acinar and duct cells of rabbit lacrimal gland. Curr. Eye Res. 37, 671-677; [41], Nandoskar, P., Wang, Y., Wei, R., Liu, Y., Zhao, P., Lu, M., Huang, J., Thomas, P., Trousdale, M., and Ding, C. (2012). Changes of chloride channels in the lacrimal glands of a rabbit model of Sjögren syndrome. Cornea 31, 273-279; [42], Kalydeco [Product Monograph] Laval, Quebec: Vertex Pharmaceuticals (Canada) Inc.; 2012; [43], Watsky, M. A., Jablonski, M., and Edelhauser, H. F. (1988). Comparison of conjunctival and corneal surface area in rabbit and human. Curr. Eye Res. 7, 483-486; [44], Van Goor, F., Hadida, S., and Grootenhuis, P. D. J. (2008). 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Example 5. Phenylquinoxalinone CFTR Activator as Potential Pro-Secretory Therapy for Constipation

Abstract. Constipation is a common condition for which current treatments can have limited efficacy. By high-throughput screening we recently identified a phenylquinoxalinone activator of the cystic fibrosis transmembrane conductance regulator (CFTR) chloride channel that stimulated intestinal fluid secretion and normalized stool output in a mouse model of opioid-induced constipation (Cil et al. Cell Mol Gastroenterol Hepatol 2:317-327, 2016). Here, we report phenylquinoxalinone structure-activity analysis, mechanism of action, animal efficacy data in acute and chronic models of constipation, and functional data in ex vivo primary cultured human enterocytes. Structure-activity analysis was done on 175 phenylquinoxalinone analogs, including 15 synthesized compounds. The most potent compound, CFTRact-J027, activated CFTR with EC50˜200 nM, with patch-clamp analysis showing a linear CFTR current-voltage relationship with direct CFTR activation. CFTRact-J027 corrected reduced stool output and hydration in a mouse model of acute constipation produced by scopolamine and in a chronically constipated mouse strain (C3H/HeJ). Direct comparison with the approved pro-secretory drugs lubiprostone and linaclotide showed substantially greater intestinal fluid secretion with CFTRact-J027, as well as greater efficacy in a constipation model. As evidence to support efficacy in human constipation, CFTRact-J027 increased transepithelial fluid transport in enteroids generated from normal human small intestine. Also, CFTRact-J027 was rapidly metabolized in vitro in human hepatic microsomes, suggesting minimal systemic exposure upon oral administration. These data establish structure-activity and mechanistic data for phenylquinoxalinone CFTR activators, and support their potential efficacy in human constipation.


Introduction.


Constipation is a common clinical problem affecting 15% of the U.S. population, with annual health-care costs estimated at ˜7 billion dollars of which >800 million dollars is spent on laxatives (1). The most frequent types of constipation include chronic idiopathic constipation (CIC), opioid-induced constipation (OIC) and constipation-predominant irritable bowel syndrome (IBS-C). Current treatment options include dietary modification and over-the-counter laxatives including agents that increase stool bulk, soften stool, create an osmotic load, or stimulate intestinal contraction (2). There are three FDA-approved prescription drugs for treatment of various types of constipation: linaclotide, a peptide agonist of the guanylate cyclase C receptor that acts by inhibiting visceral pain, stimulating intestinal motility, and increasing intestinal secretion (3); lubiprostone, a prostaglandin E analog that is thought to activate the enterocyte ClC-2 channel and perhaps CFTR (4, 5); and naloxegol, a peripherally acting μ-opioid receptor antagonist (6). These FDA-approved drugs generally showed efficacy in 40-50% of patients in different clinical trials albeit with a baseline 25-35% patient response to placebo (7-9). Despite the wide range of therapeutic options, there is a continued need for safe and effective drugs to treat constipation.


We recently introduced the idea of prosecretory therapy for constipation by direct activation of the cystic fibrosis transmembrane conductance regulator (CFTR) Cl channel, based on the idea that increasing intestinal fluid secretion would increase stool hydration and thereby accelerate intestinal transit. Intestinal fluid secretion involves active Cl secretion across the enterocyte epithelium, which is controlled by apical membrane Cl channels, including CFTR and perhaps Ca2+-activated Cl channels. CFTR is a compelling target for constipation therapy as its overactivation by bacterial enterotoxins in cholera and Traveler's diarrhea (enterotoxigenic E. coli) produces marked intestinal fluid secretion (10, 11). We recently reported that the phenylquinoxalinone CFTRact-J027, a small-molecule CFTR activator identified by high-throughput screening, increased intestinal fluid secretion and normalized stool output, stool water content and intestinal transit in a mouse model of acute constipation produced by loperamide (12). The compound had no effect in CFTR-deficient mice, showed no toxicity, and had minimal systemic exposure following oral administration because of rapid hepatic metabolism.


Here, for development of phenylquinoxalinones for therapy of constipation among other indications, we studied compound structure-activity relationships, mechanism of action by patch-clamp analysis, and animal efficacy in acute and chronic rodent models of constipation. In addition, functional studies were done in human enterocytes to support their utility for treatment of constipation in humans.


Materials and Methods.


Abbreviations. Cystic fibrosis transmembrane conductance regulator (CFTR), chronic idiopathic constipation (CIC), opioid-induced constipation (OIC), constipation-predominant irritable bowel syndrome (IBS-C), parts per million (ppm), phosphate-buffered saline (PBS), liquid chromatography mass spectrometry (LC/MS), endothelin receptor B (Ednrb).


General chemistry procedures. All chemicals were purchased from commercial suppliers and used without further purification. Commercial analogs were purchased from ChemDiv (San Diego, Calif.). All other chemicals were purchased from Sigma-Aldrich (St. Louis, Mo.) unless otherwise stated. Analytical thin layer chromatography was carried out on pre-coated plates (silica gel 60 F254, 250 μm thickness) and visualized with UV light. Flash chromatography was performed using 60 Å, 32-63 μm silica gel (Fisher Scientific, Waltham, Mass.). Concentration in vacuo refers to rotary evaporation under reduced pressure. 1H NMR spectra were recorded at 400, 600, or 800 MHz at ambient temperature with acetone-d6, DMSO-d6 or CDCl3 as solvents. 13C NMR spectra were recorded at 100, 150, or 200 MHz at ambient temperature. Chemical shifts are reported in parts per million (ppm) relative to the residual solvent peak. High-resolution mass spectra were acquired on an LTQ Orbitrap XL mass spectrometer equipped with an electrospray ionization source (ThermoFisher, San Jose, Calif.), operating in the positive ion mode. Samples were introduced into the source via loop injection at a flow rate of 200 μL/min in a solvent system of 1:1 acetonitrile/water with 0.1% formic acid. Mass spectra were acquired using Xcalibur, version 2.0.7 SP1 (ThermoFinnigan, San Jose, Calif.). The spectra were externally calibrated using the standard calibration mixture and then calibrated internally to <2 ppm with the lock mass tool. Analytical data are reported in Supplemental Data.


Synthesis of CFTRact-J102-J105, J109, J134-J141 (Path I).


Path I/RXN1: N1-benzyl-R2-substituted-2-nitroanilines (1). A stirred solution of R2-substituted-2-nitroaniline (4 mmol) and benzyl bromide (5 mmol) in water (8 mL) was sealed in a thick-wall glass tube (10 mL) and heated at 110° C. overnight. The reaction mixture was cooled to room temperature, diluted with ethyl acetate, and solid sodium bicarbonate (4 mmol) was added. The resulting mixture was washed with water and the organic layer was dried over MgSO4. After filtration, the organic layer was concentrated in vacuo and the final product was purified by silica gel column chromatography to yield brightly colored nitroaniline 1.


Path I/RXN2: A4-benzyl-R2-substituted-1,2-diaminobenzene (2). Nitroaniline 1 (5 mmol) was dissolved in ethanol (˜100 mL; requires warming) and, after cooling to room temperature, Zn (50 mmol) and a 4 M HCl (4 mL) were added to the solution. The mixture was stirred until brightly colored 1 was consumed at which point the solution was filtered through a pad of Celite and the solvent was removed in vacuo. The residue was dissolved in ethyl acetate and the mixture was neutralized with 1 M NaOH. The ethyl acetate solution was washed with water, dried over MgSO4, filtered, and concentrated in vacuo. The product was purified by silica gel column chromatography to yield 2 as a dark colored viscous oil.


Path I/RXN 3: A-(2-(4-benzyl-R2-substituted-3-oxo-3,4-dihydroquinoxalin-2-yl)-R3-substituted-phenyl)acetamide (3). A solution of 2 (0.5 mmol) and 1-acetyl-(R3-substituted)indoline-2,3-dione (0.5 mmol) in glacial acetic acid (20 mL) was heated at 90° C. overnight. Upon cooling to room temperature the solvent was removed in vacuo and the product was washed with ethanol and filtered to yield 3, which was used without further purification.


Path I/RXN 4: 3-(2-amino-R3-substituted-phenyl)-1-benzyl-R2-substituted-quinoxalin-2(1H)-one (4). To a solution of 3 (0.2 mmol) in methanol (125 mL) was added 4 M HCl (2.5 mL) and the resulting mixture was heated at 80° C. overnight. Upon cooling to room temperature, the solvent was removed in vacuo and the reaction mixture was neutralized with 1 M NaOH solution. The product 4 was extracted with ethyl acetate or dichloromethane and purified by flash column chromatography.


Synthesis of CFTRact-J133, J142-144 (Path II)


Path II/RXN5; N-(R3-substituted-2-(3-oxo-3,4-dihydroquinoxalin-2-yl)phenyl)acetamide (5). A solution of 1-acetyl-(R3-substituted)indoline-2,3-dione (1 mmol) and o-phenylenediamine (1 mmol) in toluene (10 mL) was heated at 120° C. overnight. The resulting tan precipitate of 5 was collected by filtration, washed sequentially with toluene and hexane, and then used in the next step without further purification.


Path II/RXN 6: A-(2-(4-R1-substituted-benzyl-3-oxo-3,4-dihydroquinoxalin-2-yl)-R3-substituted-phenyl)acetamide (6). A solution of 5 (0.5 mmol), R1-substituted benzyl bromide (0.6 mmol) and K2CO3 (1 mmol) in DMF (20 mL) was stirred overnight at room temperature. The reaction mixture was diluted with water and extracted with ethyl acetate or dichloromethane. The organic layer was washed sequentially with water and brine and then dried over MgSO4. Filtration and removal of solvent yielded 6 as a tan product that was washed with ethanol and used in the deacylation reaction described above without further purification.


Cell culture. Fischer Rat Thyroid (FRT) cells stably co-expressing human wildtype CFTR and the halide-sensitive yellow fluorescent protein (YFP)-H148Q were as described (13). Cells were cultured on plastic in Coon's-modified Ham's F12 medium supplemented with 10% fetal bovine serum, 2 mM L-glutamine, 100 units/ml penicillin, and 100 μg/ml streptomycin. For plate reader assays cells were plated in black 96-well microplates (Corning-Costar Corp., New York, N.Y.) at a density of 20,000 cells per well and assayed 24-48 hours after plating.


Plate reader assay of CFTR activity. CFTR activity was assayed as described (13). Briefly, cells were washed three times with phosphate-buffered saline (PBS) and then incubated for 10 min with 60 μl of PBS containing test compounds (at 10 μM) and a low concentration of forskolin (125 nM). I influx was measured in a plate reader by recording fluorescence continuously (200 ms per point) for 2 s (baseline) and then for 12 s after rapid (<1 s) addition of 165 μL of PBS in which 137 mM Cl was replaced by I. The initial rate of I influx was computed using exponential regression.


Short-circuit current measurement. Short-circuit current was measured in FRT cells stably expressing human wildtype CFTR cultured on porous filters as described (14). The basolateral solution contained (in mM): 120 NaCl, 5 KCl, 1 CaCl2, 1 MgCl2, 10 glucose, 25 NaHCO3 and 5 HEPES (pH 7.4, 37° C.). In the apical solution 60 mM NaCl was replaced by Na gluconate, and CaCl2 was increased to 2 mM, and the basolateral membrane was permeabilized with 250 μg/ml amphotericin B.


Patch-clamp experiments. Whole-cell and inside-out membrane currents were recorded in FRT cells stably expressing human wildtype CFTR. For whole-cell experiments the extracellular (bath) solution contained (in mM): 150 NaCl, 1 CaCl2, 1 MgCl2, 10 glucose, 10 mannitol, 10 Na-HEPES (pH 7.4). The pipette (intracellular) solution contained (in mM): 120 CsCl, 10 TEA-Cl, 0.5 EGTA, 1 MgCl2, 10 Cs-HEPES, 40 mannitol, 1 ATP (7.4). For inside-out patch-clamp experiments the pipette solution contained (in mM): 150 N-methyl-D-glucamine chloride (NMDG-Cl), 3 CaCl2, 2 MgCl2, 10 Na-Hepes (pH 7.3). The bath solution contained (in mM): 150 NMDG-Cl, 2 MgCl2, 10 EGTA, 10 Na-Hepes, 1 ATP (pH 7.3), and 125 nM catalytic subunit of protein kinase A (Promega, Sunnyvale, Calif.). Pipette electrical resistance for both whole-cell and inside-out experiments was 3-5 MΩ. The protocol for stimulation consisted of 600-ms voltage steps from −100 to +100 mV in 20 mV increments starting from a holding potential of −60 mV. The interval between steps was 4 s. Membrane currents were filtered at 1 kHz and digitized at 5 kHz. Data were analyzed using the Igor software (Wavemetrics, Portland, Oreg.) with custom software kindly provided by Dr. Oscar Moran.


In vitro gastric acid and metabolic stability. To study gastric acid stability CFTRact-J027 (10 μM) was dissolved in simulated gastric fluid (0.2 NaCl, 0.7% HCl, pH 2) and incubated for 3 h at 37° C. To study in vitro metabolic stability CFTRact-J027 (5 μM) was incubated for specified times at 37° C. with human liver microsomes (1 mg protein/m1; Sigma-Aldrich) in potassium phosphate buffer (100 mM) containing 1 mM NADPH. After specified incubation periods the mixtures were chilled on ice, and 0.5 m1 of ice-cold ethyl acetate was added. Samples were centrifuged for 15 min at 3000 rpm, the supernatants evaporated to dryness, and the residues were dissolved in 100 μL mobile phase (acetonitrile:water, 3:1) and assayed by liquid chromatography mass spectrometry (LC/MS). The solvent system consisted of a linear gradient from 5 to 95% acetonitrile over 16 min (0.2 m1/min flow). Mass spectra were acquired on a mass spectrometer (Waters 2695 and Micromass ZQ, Milford, Mass.) using electrospray (+) ionization, mass ranging from 100 to 1500 Da, cone voltage 40 V.


Animals. Animal experiments were approved by UCSF Institutional Animal Care and Use Committee. Animals were housed in communal cages in a temperature and humidity controlled environment with 12-hour light/dark cycle and provided standard rodent chow and water ad libitum. Wildtype female CD1 mice were bred in the UCSF Laboratory Animal Resource Center. Female C3H/HeJ mice, which have a spontaneous mutation in TLR4 (Tlr4lps-d) and their control background C3H/HeOuJ mice were purchased from Jackson Laboratories (Bar Harbor, Me.).


Constipation models in mice. CD1 mice (age 8-10 weeks) were administered loperamide (0.3 mg/kg) or scopolamine (0.5 mg/kg) intraperitoneally (ip) to induce constipation. CFTRact-J027 (10 mg/kg, in saline containing 5% DMSO and 10% Kolliphor HS 15) was given ip or orally (po) either 1 h before, at the same time, or 1 h after loperamide/scopolamine in different experiments. Control mice were treated with vehicle only. Some mice were treated orally with lubiprostone (0.5 mg/kg) or linaclotide (0.5 mg/kg, Toronto Research Chemicals Inc., Toronto, Ontario, Canada). At designated time points mice were placed individually in metabolic cages with food and water provided ad libitum. Stool samples were collected for 3 h, and total stool weight and number of fecal pellets were determined. Stool samples were dried at 80° C. for 24 h and stool water content was calculated as [wet weight-dry weight]/wet weight.


The efficacy of orally administered CFTRact-J027 (10 mg/kg) was also tested in a genetically constipated mouse strain (15) (C3H/HeJ, age 8-11 weeks) and their wildtype counterparts (C3H/HeOuJ, age 8-11 weeks). Mice were placed in metabolic cages after CFTRact-J027 or vehicle administration at zero time and stool was collected for 4 h. Stool weight, pellet number and water content were determined as described above. Whole-gut transit time was measured to assess gut motility, in which mice treated with CFTRact-J027 (10 mg/kg, ip) or vehicle at zero time were given with 100 μL blue marker (5% Evans blue, 5% gum Arabic) orally. The time of blue dye appearance in stool was determined. All experiments in C3H/HeJ and C3H/HeOuJ mice were done in paired animals to minimize variability.


Closed-loop model of intestinal fluid secretion. Mice were given access to 5% dextrose water but not solid food for 24 h before experiments. Mice were anesthetized with isoflurane and body temperature was maintained during surgery at 36-38° C. using a heating pad. A small abdominal incision was made to expose the small intestine, and closed mid-jejunal loops (length 2-3 cm) were isolated by sutures. Loops were injected with 100 μL vehicle alone or 100 μg CFTRact-J027, lubiprostone or linaclotide in vehicle. The abdominal incision was closed with sutures, and mice were allowed to recover from anesthesia. Intestinal loops were removed at 90 min and loop length and weight were measured to quantify fluid secretion.


Swelling measurements in human enteroids. Tissues from human subjects were obtained under approval of the Johns Hopkins University School of Medicine Institutional Review Board (protocol NA 00038329). Duodenal and jejunal biopsy specimens were obtained from adults during routine endoscopy at Johns Hopkins Hospital. Crypt isolation, enteroid propagation and culture were as described (16). For swelling measurements enteroids were seeded in 35-mm dishes with bottom coverglass with 1.5 mL media. On the day of the experiment the media was replaced with 3 mL Advanced DMEM/F12 and enteroids were incubated with 1 mM calcein green-acetoxymethyl ester for 1 h at 37° C. to label cytoplasm. Relative enteroid volume following addition of specified concentrations of forskolin was measured using a laser scanning confocal microscope (Fluoview FV10i-LIV; Olympus) at 37° C., 5% CO2, and 95% relative humidity. In some studies CFTRact-J027 was added 10 min prior to forskolin. Images were acquired every 10 min and analyzed with MetaMorph version 7.7 software (Olympus) to quantify enteroid areas.


Statistical analysis. Experiments with two groups were analyzed with Student's t-test; when there are three or more groups analysis was done with one-way analysis of variance and post-hoc Newman-Keuls multiple comparisons test. P<0.05 was taken as statistically significant.


Analytical data.


3-(2-Amino-5-nitrophenyl)-1-(4-bromobenzyl)quinoxalin-2(1H)-one (CFTRact-J102)



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1H NMR (800 MHz, DMSO-d6) δ 9.13 (d, J=2.8 Hz, 1H), 8.05 (dd, J=9.2, 2.8 Hz, 1H), 7.97 (dd, J=7.9, 1.5 Hz, 1H), 7.80 (s, 2H), 7.57 (ddd, J=8.6, 7.2, 1.5 Hz, 1H), 7.54-7.48 (m, 2H), 7.44 (dd, J=8.5, 1.2 Hz, 1H), 7.40 (ddd, J=8.2, 7.2, 1.2 Hz, 1H), 7.34 (d, J=8.5 Hz, 2H), 6.91 (d, J=9.2 Hz, 1H), 5.55 (s, 2H). 13C NMR (201 MHz, DMSO) δ 154.99, 154.61, 153.42, 135.85, 135.34, 132.70, 132.27, 131.97, 131.12, 130.03, 129.76, 129.53, 126.87, 124.20, 120.88, 116.16, 115.95, 115.33, 45.47. HRMS [C21H15BrN4O3+H]+: calcd 451.0406/found 451.0417.


3-(2-Amino-5-nitrophenyl)-1-(3-bromobenzyl)quinoxalin-2(1H)-one (CFTRact-J103)



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1H NMR (600 MHz, DMSO-d6) δ 9.09 (d, J=2.8 Hz, 1H), 8.03 (dd, J=9.2, 2.8 Hz, 1H), 7.95 (dd, J=1.9, 1.5 Hz, 1H), 7.77 (s, 2H), 7.62 (s, 1H), 7.56 (ddd, J=8.6, 7.2, 1.6 Hz, 1H), 7.48-7.40 (m, 2H), 7.38 (dd, J=15.2, 1.1 Hz, 1H), 7.32 (dt, 7=7.8, 1.3 Hz, 1H), 7.27 (t, J=7.8 Hz, 1H), 6.88 (d, 7=9.2 Hz, 1H), 5.54 (s, 2H). 13C NMR (151 MHz, DMSO) δ 154.98, 154.64, 153.50, 139.18, 135.42, 132.76, 132.29, 131.21, 131.08, 130.71, 130.18, 129.99, 129.49, 126.79, 126.42, 124.16, 122.40, 116.24, 115.92, 115.24, 45.54. HRMS [C21H15BrN4O3+H]+: calcd 451.0406/found 451.0404.


3-(2-Amino-5-nitrophenyl)-1-(2-bromobenzyl)quinoxalin-2(1H)-one (CFTRact-J104)



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1H NMR (800 MHz, DMSO-d6) δ 9.11 (d, J=2.8 Hz, 1H), 8.05 (dd, J=9.2, 2.8 Hz, 1H), 8.02 (dd, J=8.0, 1.5 Hz, 1H), 7.83 (s, 2H), 7.79-7.69 (m, 1H), 7.58 (ddd, J=8.6, 7.2, 1.5 Hz, 1H), 7.43 (ddd, J=8.2, 7.2, 1.2 Hz, 1H), 7.32-7.22 (m, 2H), 7.19 (dd, J=8.5, 1.2 Hz, 1H), 6.98-6.88 (m, 2H), 5.48 (s, 2H). 13C NMR (201 MHz, DMSO) δ 155.00, 154.50, 153.41, 135.34, 134.37, 133.25, 132.81, 132.31, 131.32, 130.08, 129.80, 129.53, 128.56, 127.68, 126.89, 124.32, 122.41, 116.10, 115.96, 115.00, 47.07. HRMS [C21H15BrN4O3+H]+: calcd 451.0406/found 451.0401.


3-(2-Amino-5-nitrophenyl)-1-benzyl-6-fluoroquinoxalin-2(1H)-one (CFTRact-J105)



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1H NMR (600 MHz, DMSO-d6) δ 9.24 (d, J=2.7 Hz, 1H), 8.02 (dd, J=9.2, 2.8 Hz, 1H), 7.91 (s, 2H), 7.86 (d, J=8.9 Hz, 1H), 7.50-7.37 (m, 2H), 7.32 (s, 4H), 7.24 (t, J=6.8 Hz, 1H), 6.90 (d, J=9.2 Hz, 1H), 5.55 (s, 2H). 13C NMR (151 MHz, DMSO) δ 158.44 (d, JC-F=242 Hz), 157.64, 155.15, 154.42, 154.34, 136.13, 132.77 (br), 129.74, 129.63, 129.11, 127.77, 127.33, 126.95, 118.53 (d, JC-F=22 Hz), 116.92 (br), 116.22, 115.46, 115.01 (d, JC-F=21 Hz), 46.25. HRMS [C21H15FN4O3+H]+: calcd 391.1206/found 391.1206.


N-(2-(4-Benzyl-S-oxo-S, 4-dihydroquinoxalin-2-yl)-4-nitrophenyl)-acetamide (CFTRact-J109)



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1H NMR (800 MHz, DMSO-d6) δ 10.27 (s, 1H), 8.57 (d, J=2.8 Hz, 1H), 8.21 (d, J=9.2 Hz, 1H), 7.94 (dd, J=7.9, 1.5 Hz, 1H), 7.61 (ddd, J=8.7, 7.1, 1.6 Hz, 1H), 7.51-7.45 (m, 1H), 7.45-7.39 (m, 3H), 7.35 (q, J=7.7, 7.0 Hz, 3H), 7.28 (t, J=7.4 Hz, 1H), 5.55 (s, 2H), 2.01 (s, 3H). 13C NMR (201 MHz, DMSO) δ 169.26, 154.72, 154.30, 143.54, 142.57, 136.23, 133.47, 133.14, 131.44, 130.30, 129.04, 128.13, 127.79, 127.47, 127.16, 125.50, 124.15, 122.90, 115.55, 45.80, 24.42. HRMS [C23H18N4O4+H]+: calcd 415.1401/found 415.1389.


3-(2-Amino-5-fluorophenyl)-1-benzylquinoxalin-2(1H)-one (CFTRact-J133)



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1H NMR (600 MHz, Chloroform-d) δ 8.05 (dd, J=10.7, 3.0 Hz, 1H), 7.85 (dd, J=ID, 1.5 Hz, 1H), 7.45 (td, J=8.6, 7.9, 1.6 Hz, 1H), 7.38-7.25 (m, 7H), 6.99 (ddd, J=8.7, 7.5, 3.0 Hz, 1H), 6.73 (dd, J=8.9, 4.8 Hz, 1H), 5.57 (s, 2H), 5.42 (s, 2H). 13C NMR (151 MHz, CDCl3) δ 154.90 (d, JC-F=234 Hz), 154.60, 143.97, 135.22, 132.48, 132.37, 130.30, 129.73, 128.92, 127.71, 126.95, 123.84, 119.61 (br), 118.57 (d, JC-F=23 Hz), 118.04, 117.99, 117.79 (d, JC-F=24 Hz), 114.39, 46.41. HRMS [C21H16FN3O+H]+: calcd 346.1356/found 346.1371.


3-(2-Amino-5-bromophenyl)-1-benzylquinoxalin-2(1H)-one (CFTRact-J134)



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1H NMR (600 MHz, Chloroform-d) δ 8.43 (d, J=2.4 Hz, 1H), 7.87-7.79 (m, 1H), 7.54-7.42 (m, 1H), 7.36-7.26 (m, 7H), 6.68 (d, J=8.6 Hz, 2H), 5.60 (s, 2H), 5.57 (s, 2H). 13C NMR (101 MHz, CDCl3) δ 154.62, 153.89, 146.69, 135.14, 134.20, 134.00, 132.43, 132.33, 130.45, 129.75, 128.99, 127.78, 126.93, 123.97, 120.52, 118.78, 114.46, 108.76, 46.47. HRMS [C21H16BrN3O+H]+: calcd 406.0555/found 406.0548.


3-(2-Amino-5-nitrophenyl)-1-benzyl-6-chloroquinoxalin-2(1H)-one (CFTRact-J135)



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1H NMR (600 MHz, DMSO-d6) δ 9.25 (d, J=2.7 Hz, 1H), 8.09 (d, J=2.4 Hz, 1H), 8.02 (dd, J=9.3, 2.8 Hz, 1H), 7.93 (s, 2H), 7.56 (dd, 7=9.1, 2.4 Hz, 1H), 7.42 (d, J=9.1 Hz, 1H), 7.31 (d, J=4.4 Hz, 4H), 7.25 (td, J=5.3, 2.7 Hz, 1H), 6.90 (d, J=9.3 Hz, 1H), 5.54 (s, 2H). 13C NMR (151 MHz, DMSO) δ 155.18, 154.39, 154.32, 136.01, 135.37, 132.85, 131.71, 130.47, 129.77, 129.11, 128.83, 128.01, 127.79, 127.30, 126.98, 117.05, 116.27, 115.26, 46.21. HRMS [C21H15ClN4O3+H]+: calcd 407.0911/found 407.0908.


3-(2-Amino-5-nitrophenyl)-1-benzyl-6-bromoquinoxalin-2(1H)-one (CFTRact-J136)



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1H NMR (600 MHz, DMSO-d6) δ 9.23 (d, J=2.8 Hz, 1H), 8.25 (d, J=2.3 Hz, 1H), 8.03 (dd, J=9.3, 2.7 Hz, 1H), 7.90 (s, 2H), 7.68 (dd, J=9.0, 2.4 Hz, 1H), 7.37 (d, J=9.1 Hz, 2H), 7.31 (d, J=4.4 Hz, 4H), 6.91 (d, J=9.3 Hz, 1H), 5.54 (s, 2H). 13C NMR (101 MHz, DMSO) δ 155.20, 154.44, 154.32, 136.03, 135.26, 133.23, 132.12, 131.88, 129.83, 129.15, 127.82, 127.31, 127.06, 117.80, 117.39, 116.26, 115.74, 115.30, 46.14. HRMS [C21H15BrN4O3+H]+: calcd 451.0406/found 451.0398.


3-(2-Amino-6-bromophenyl)-1-benzyl-6-methylquinoxalin-2(1H)-one (CFTRact-J139)



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1H NMR (800 MHz, Chloroform-d) δ 8.24 (d, J=8.6 Hz, 1H), 7.65 (dd, J=2.1, 1.0 Hz, 1H), 7.37-7.32 (m, 2H), 7.32-7.28 (m, 4H), 7.20 (d, J=8.5 Hz, 1H), 6.98 (d, J=2.0 Hz, 1H), 6.93 (dd, J=8.6, 2.0 Hz, 1H), 5.78 (s, 2H), 5.57 (s, 2H), 2.45 (d, J=0.7 Hz, 3H). 13C NMR (201 MHz, CDCl3) δ 154.65, 154.20, 148.91, 135.34, 133.79, 133.44, 132.25, 131.49, 130.12, 129.35, 128.93, 127.70, 126.96, 125.39, 120.03, 119.46, 117.67, 114.19, 46.41, 20.65. HRMS [C11H18BrN3O+H]+: calcd 420.0711/found 420.0704.


3-(2-Amino-5-fluorophenyl)-1-benzyl-6-methylquinoxalin-2(1H)-one (CFTRact-J140)



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1H NMR (600 MHz, Chloroform-d) δ 8.04 (dd, J=10.7, 3.0 Hz, 1H), 7.67-7.63 (m, 1H), 7.35-7.29 (m, 2H), 7.31-7.23 (m, 4H), 7.19 (d, J=8.6 Hz, 1H), 6.98 (ddd, J=8.8, 7.6, 3.0 Hz, 1H), 6.72 (dd, J=8.9, 4.9 Hz, 1H), 5.55 (s, 2H), 5.41 (s, 2H), 2.42 (s, 3H). 13C NMR (101 MHz, CDCl3) δ 154.94 (d, JC-F=235 Hz), 154.55, 154.08, 143.91, 135.32, 133.82, 132.33, 131.69, 130.26, 129.55, 128.94, 127.71, 126.98, 119.85 (d, JC-F=7 Hz), 118.50 (d, JC-F=23 Hz), 118.05 (d, JC-F=7 Hz), 117.82 (d, JC-F=24 Hz), 114.20, 46.39, 20.64. HRMS [C11H18FN3O+H]+: calcd 360.1512/found 360.1505.


3-(2-Amino-5-iodophenyl)-1-benzyl-6-methylquinoxalin-2(1H)-one (CFTRact-J141)



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1H NMR (600 MHz, Chloroform-d) δ 8.20 (dd, J=1.9, 1.5 Hz, 1H), 7.65 (s, 1H), 7.34-7.26 (m, 4H), 7.28-7.24 (m, 3H), 7.27-7.20 (m, 1H), 7.18 (dd, J=8.6, 1.2 Hz, 1H), 6.85-6.77 (m, 1H), 6.57 (dd, J=8.6, 0.9 Hz, 1H), 5.55 (s, 2H), 2.42 (s, 3H). 13C NMR (101 MHz, CDCl3) δ 154.52, 140.03, 139.54, 135.48, 135.25, 133.84, 133.63, 131.97, 131.27, 129.50, 128.93, 128.90, 127.68, 127.01, 126.90, 119.25, 117.29, 114.18, 46.36, 20.64. HRMS [C22H18IN3O+H]+: calcd 468.0573/found 468.0567.


3-(2-Amino-6-bromophenyl)-1-benzylquinoxalin-2(1H)-one (CFTRact-J142)



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1H NMR (600 MHz, Chloroform-d) δ 8.21 (d, J=8.6 Hz, 1H), 7.82 (dd, J=8.0, 1.5 Hz, 1H), 7.46-7.41 (m, 1H), 7.36-7.21 (m, 7H), 6.96-6.88 (m, 2H), 5.77 (s, 2H), 5.56 (s, 2H). 13C NMR (101 MHz, CDCl3) δ 154.73, 154.28, 148.95, 135.22, 133.44, 132.32, 130.22, 129.56, 128.97, 128.89, 127.76, 126.96, 125.53, 123.93, 120.03, 119.48, 117.46, 114.44, 46.47. HRMS [C21H16BrN3O+H]+: calcd 406.0555/found 406.0550.


3-(2-Amino-5-iodophenyl)-1-(2-nitrobenzyl)quinoxalin-2(1H)-one (CFTRact-J143)



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1H NMR (600 MHz, Chloroform-d) δ 8.59 (t, J=1.9 Hz, 1H), 8.27-8.19 (m, 1H), 7.89 (dq, 7=8.1, 1.7 Hz, 1H), 7.52-7.39 (m, 4H), 7.41-7.33 (m, 1H), 7.04 (dq, 7=8.4, 1.5 Hz, 1H), 6.95-6.87 (m, 1H), 6.57 (dd, 7=8.7, 1.4 Hz, 1H), 5.95 (s, 2H), 5.75 (s, 2H). 13C NMR (151 MHz, CDCl3) δ 154.47, 153.57, 147.50, 140.08, 139.82, 134.17, 132.26, 132.11, 130.64, 130.61, 129.84, 129.75, 128.53, 127.10, 125.78, 124.32, 119.23, 117.09, 113.89, 113.79, 44.61. HRMS [C21H15IN4O3+H]+: calcd 499.0267/found 499.0251.


3-(2-Amino-5-iodophenyl)-1-(2-cyanobenzyl)quinoxalin-2(1H)-one (CFTRact-J144)



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1H NMR (600 MHz, Chloroform-d) 1H NMR (600 MHz, Chloroform-d) δ 8.59 (s, 1H), 8.23 (d, 7=6 Hz, 1H), 7.87 (ddd, 7=8.1, 3.9, 1.5 Hz, 1H), 7.81 (dd, 7=8.0, 1.5 Hz, 1H), 7.53-7.42 (m, 2H), 7.37 (dq, 7=23.7, 8.3, 7.8 Hz, 2H), 7.28-7.19 (m, 1H), 7.09 (dq, 7=24.8, 8.7, 7.9 Hz, 2H), 6.90-6.77 (m, 1H), 6.57 (d, J=8.6 Hz, 1H), 5.77 (d, J=2.2 Hz, 2H). 13C NMR (151 MHz, CDCl3) δ 154.56, 153.56, 147.43, 140.04, 139.81, 138.68, 133.49, 133.22, 132.28, 131.88, 130.76, 130.65, 129.87, 128.75, 128.20, 126.78, 124.31, 119.23, 116.89, 113.84, 111.25, 44.59. HRMS [C22H15IN4O+H]+: calcd 479.0369/found 479.0362.


Results.


Synthesis and structure-activity analysis of phenylquinoxalinone CFTR activators. Limited structure-activity relationship (SAR) information emerged from analysis of 160 commercially available phenylquinoxalinone analogs, as most had quite different structures or multiple substituent modifications in relation to CFTRact-J027. Table 2 reports CFTR activity of selected commercial analogs most closely related to CFTRact-J027 (J051-J062). The benzyl (R1) substituent on the phenylquinoxalinone appeared to be important, as unsubstituted (CFTRact-J051), methyl (CFTRact-J052) and phenylacetyl (CFTRact-J058) greatly reduced activity. Limited substitution (R2 position) on the quinoxalinone ring showed that a nitro group (CFTRact-J054) was tolerated. Substituent changes on the phenyl ring also strongly modulated activity, for example changing R3 and R4 substituents to N-benzyl and bromo (CFTRact-J056) or N-acetyl and unsubstituted (CFTRact-J057) greatly reduced activity. Because of the limited information from commercial compounds, synthesis of targeted analogs was undertaken.









TABLE 2







CFT activation by phenylquinoxalinone analogs.




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Compound
R1
R2
R3
R4
EC50 (μM)















CFTRact-J027
Bn
H
NH2
5-NO2
0.2


CFTRact-J056
Bn
H
NHBn
5-Br
~15


CFTRact-J057
Bn
H
NHAc
H
~15


CFTRact-J058
phenylacetyl
H
NHAc
H
~20


CFTRact-J059
3-BrBn
H
NHAc
H
~19


CFTRact-J060
Bn
H
NHAc
5-CH3
>25


CFTRact-J061
phenethyl
H
NHAc
H
~20


CFTRact-J102
4-BrBn
H
NH2
5-NO2
>25


CFTRact-J103
3-BrBn
H
NH2
5-NO2
1.2


CFTRact-J104
2-BrBn
H
NH2
5-NO2
7.3


CFTRact-J109
Bn
H
NHAc
5-NO2
1.5


CFTRact-J105
Bn
F
NH2
5-NO2
0.53


CFTRact-J135
Bn
Cl
NH2
5-NO2
0.11


CFTRact-J136
Bn
Br
NH2
5-NO2
0.26


CFTRact-J133
Bn
H
NH2
5-F
0.79


CFTRact-J134
Bn
H
NH2
5-Br
0.31


CFTRact-J140
Bn
CH3
NH2
5-F
0.70


CFTRact-J141
Bn
CH3
NH2
5-I
0.47


CFTRact-J143
2-NO2Bn
H
NH2
5-I
>25


CFTRact-J144
2-CNBn
H
NH2
5-I
>25


CFTRact-J142
Bn
H
NH2
6-Br
1.5


CFTRact-J139
Bn
CH3
NH2
6-Br
0.65


JS25
Bn
H
H
5-NO2
0.009









Approximate EC50 of commercial analogs (CFTRact-J051-J062) deduced from two-concentration point analysis. EC50 of synthesized compounds measured from full dose-response study.


Two routes were developed to synthesize the phenylquinoxalinones analogs (FIG. 14A). The Path I route begins with A-benzylation of the appropriate 2-nitroaniline (→1) and subsequent nitro group reduction to give 1,2-diamino analog 2. Condensation of this diamine with the appropriate N-acylisatin in acetic acid delivers quinoxalin-2(1H)-one 3; attempts to effect this transformation with non-acylated isatins usually produced the desired product in low yield. Finally, acid-catalyzed deacylation of 3 delivered the quinoxalin-2(1H)-one 4. Path II allowed for late-stage introduction of the A-benzyl moiety, but requires the use of a symmetrical 1,2-diamine (here, 1,2-diaminobenzene) so as to avoid regioisomer formation in quinoxalin-2(1H)-one 5. N1-Benzylation with the appropriate benzyl bromide delivered quinoxalin-2(1H)-one 6 and deacylation gave the quinoxalin-2(1H)-one 4.


CFTR activity was measured using a plate reader assay of iodide influx following extracellular addition of iodide in FRT cells stably expressing human wildtype CFTR and a YFP fluorescent halide sensor. FIG. 14B shows the concentration-dependence data of selected compounds, with EC50 values for compounds given in Table 2.



FIG. 14C summarizes structure-activity results for the synthesized compounds reported in Table 2 (compounds with J1## designations). In general, having a substitution group (R1) on the benzyl group, especially in the para- or ortho-positions, reduced activity (CFTRact-J102, -J103, -J104, -J143, -J144). Acetylation of the amino-group on CFTRact-J027, giving CFTRact-J109, also reduced activity. Analogs with halide substitution at the 6-position (R2) of the quinoxalinone core ring (CFTRact-J105, -J135, -J136) gave similar or slightly reduced activity compare to CFTRact-J027, and modifying R2 to a methyl substituent was tolerated (CFTRact-J141). Changing the 5-nitro on the phenyl ring of the phenylquinoxalinone to a 5-fluoro, 5-bromo or 5-iodo slightly reduced activity (for example, compare CFTRact-J134 to -J027), while shifting to the 6-position (compare CFTRact-J134 to -J142) greatly reduced activity. CFTRact-J135, the most potent synthesized analog, fully activated CFTR (FIG. 14D), as the cAMP agonist forskolin produced minimal further increase in current, with EC50˜300 nM, which was comparable to CFTRact-J027. As none of the commercial and synthesized analogs were significantly more potent than CFTRact-J027, which was already shown to have favorable pharmacological properties and efficacy in mice (12), subsequent studies were done with CFTRact-J027.


Patch-clamp electrophysiology shows direct CFTR activation by CFTRact-J027. Patch-clamp was done to investigate the mechanism of CFTR activation by CFTRact-J027. In whole-cell recordings CFTR was partially activated using a low concentration of forskolin (150 nM) to give ˜25% maximal stimulation. Addition of 1 μM CFTRact-J027 in the extracellular condition further increased CFTR activity by more than four-fold (FIGS. 15A-15C). The currents activated by forskolin and CFTRact-J027 changed linearly with applied voltage and were blocked by 10 μM CFTRinh-172, CFTR activation was also measured under cell-free conditions using the inside-out patch-clamp configuration using large pipette tips in order to obtain macropatches containing multiple CFTR channels. After inducing phosphorylation with submaximal ATP and the catalytic subunit of protein kinase A, CFTRact-J027 strongly increased CFTR activity (FIG. 15D). CFTRact-J027 thus activates CFTR by a direct binding mechanism, which is consistent with prior data showing that CFTRact-J027 does not elevate cellular cAMP concentration (12).


CFTRact-J027 efficacy in a scopolamine-induced mouse model of acute constipation. We previously showed CFTRact-J027 efficacy in a loperamide-induced mouse model of constipation (12). To show efficacy in an alternative, non-opioid mouse model of acute constipation, CFTRact-J027 was administered orally 1 h prior to scopolamine. FIG. 16A shows normalization of stool parameters by CFTRact-J027 in the scopolamine-treated mice. CFTRact-J027 was also effective when administered intraperitoneally after development of constipation in both loperamide and scopolamine models (FIG. 16B). However, CFTRact-J027 was not effective when given orally after development of constipation (FIG. 16C), which is not unexpected as both scopolamine and loperamide delay gastric emptying and intestinal transit, likely preventing CFTRact-J027 delivery to its site of action.


CFTRact-J027 efficacy in a genetic mouse model of chronic constipation. CFTRact-J027 was also tested in a genetic mouse model (C3H/HeJ) of chronic constipation. C3H/HeJ mice have a spontaneous mutation in Toll-like receptor 4 gene (Tlr4lps-d), which causes impaired interactions between gut microbiota and enteric neurons resulting in reduced enteric neuronal survival with delayed intestinal transit and decreased stool output (15). We found that C3H/HeJ mice have ˜30% reduced stool output compared to control mice in a matched background (C3H/HeOuJ), with remarkably decreased stool water content and prolonged whole-gut transit time. Oral administration of 10 mg/kg CFTRact-J027 increased 4-h stool weight, pellet number and water content in C3H/HeJ mice to the level of wildtype controls (FIG. 17A). CFTRact-J027 normalized the increased whole-gut transit time in C3H/HeJ mice (FIG. 17B), but did not affect stool parameters or whole-gut transit time in the wildtype control mice.


CFTRact-J027 is stable in gastric acid and rapidly metabolized by human hepatic microsomes. Incubation of 10 μM CFTRact-J027 in simulated gastric fluid (pH 2) at 37° C. for 3 h showed no compound degradation (FIG. 18A). In vitro metabolic stability measurements in human hepatic microsomes revealed rapid compound metabolism (elimination half-life ˜35 min), with only 34% of the compound remaining at 60 min (FIG. 18B).


Greater efficacy of CFTRact-J027 compared to lubiprostone and linaclotide in increasing intestinal secretion and normalizing stool parameters in constipation. The efficacy of CFTRact-J027 in increasing intestinal secretion was compared with that of the approved prosecretory drugs lubiprostone and linaclotide. In a first set of studies, intestinal fluid accumulation was measured in a closed intestinal loop model. Closed mid-jejunal loops were injected with CFTRact-J027 or test drug, and fluid accumulation was quantified after 90 min. Significantly greater intestinal fluid accumulation was produced by CFTRact-J027 compared to equal doses of lubiprostone or linaclotide (FIG. 19A). In a second set of studies, drug efficacy was compared in a mouse model of scopolamine-induced constipation. CFTRact-J027 was more effective in increasing stool output, pellet number and water content compared to supramaximal (250-500 fold greater than human mg/kg dose) doses of lubiprostone and linaclotide (FIG. 19B).


CFTRact-J027 increases fluid secretion in enteroids generated from normal human duodenum and jejunum. To study CFTRact-J027 efficacy in a model system of direct relevance to human intestine, swelling responses were measured in enteroids generated from normal human duodenum and jejunum. The enteroids comprise a sealed epithelial layer of enterocytes with CFTR expressed at the inner, luminal membrane, in which CFTR activation produces a swelling response over tens of minutes (16, 17). Enteroids generated from human duodenum and jejunum showed a slow swelling response to 0.1 or 0.2 μM forskolin (FIG. 20), which was increased by pretreatment for 10 min with CFTRact-J027, with greatest effect seen for enteroids from jejunum. The response produced by CFTRact-J027 was approximately 50% of that produced by maximal (5 μM) forskolin.


Discussion.


CFTRact-J027 showed efficacy in rodent models of constipation induced by opioid and non-opioid anti-motility agents, as well as in chronically constipated C3H/HeJ mice. Opioid and non-opioid anti-motility agents have been widely used to test laxatives in rodents, as these models are technically simple and informative in short-term studies, and the opioid models have high relevance to OIC in humans. However, they may have limited relevance to human CIC and IBS-C, which are chronic conditions. Genetic models of chronic constipation have more relevance to human CIC and IBS-C due to their chronic phenotype, and do not require pharmacological interventions targeting intestinal motility. Though there are genetically constipated models of Hirschprung's disease with spontaneous mutations in endothelin receptor B (Ednrb) and targeted mutation in Ednrb ligand endothelin 3 that manifest aganglionic colon (18-20), we used C3H/HeJ mice here because they manifest chronic constipation but with a milder phenotype and normal survival (15), which make them more relevant to non-life-threatening CIC and IBS-C. We found that CFTRact-J027 was effective in both pharmacological and genetic models of constipation, which supports its potential use in acute and various forms of chronic constipation in humans including CIC, IBS-C and OIC.


A modular approach was developed for efficient synthesis of phenylquinoxalinone analogs using substituted nitro-anilines, benzyl bromides and isatins. The most potent phenylquinoxalinones have favorable drug-like properties, including the presence of multiple hydrogen bond acceptors, average molecular weight of ˜400 Da, a Log P of ˜4.0 and topological polar surface areas of ˜80 Å2 (21, 22).


Patch-clamp studies indicated direct activation of CFTR by CFTRact-J027. CFTR activation by CFTRact-J027 required a low level of phosphorylation, as produced by submaximal forskolin in whole-cell recordings and ATP/catalytic subunit of protein kinase A in inside-out patches, and by a low concentration of forskolin in enteroid swelling measurements. Basal CFTR phosphorylation is required as well for other CFTR activators, including the clinically approved compound VX-770, a potentiator of some mutant CFTRs causing cystic fibrosis (23). The current-voltage relationship in cells stimulated with CFTRact-J027 was linear, as expected for CFTR-mediated function. CFTR activation by CFTRact-J027 in inside-out patches indicates a direct activation mechanism, likely at a site on the cytoplasmic domain of CFTR. Further studies are needed by define the precise binding site of CFTRact-J027 on CFTR, which are likely to be quite challenging because of the large size of CFTR and its complex gating mechanism. Indeed, the site of action of clinically approved potentiators and correctors of mutant CFTRs causing cystic fibrosis is not known.


We found greater effect of CFTRact-J027 compared with lubiprostone or linaclotide in stimulating fluid secretion in mouse intestine, which translated to greater efficacy in increasing stool output and hydration in a scopolamine model of constipation. The greater efficacy of CFTRact-J027 may be due to greater intestinal secretion. Lubiprostone and linaclotide are thought to act largely by inducing intestinal fluid secretion, though by different mechanisms. These compounds activate intestinal secretory pathways indirectly by increasing cellular cyclic nucleotide levels through their actions on prostanoid and guanylate cyclase C receptors, respectively (3, 5). The non-selective activation of cyclic nucleotide pathways may be responsible in part for the side effects of these drugs. Compared to lubiprostone and linaclotide, direct-acting CFTR activators have a defined mechanism of action targeting a single prosecretory ion transporter, with less likelihood of side effects due to absence of global cyclic nucleotide elevation (24). Also, targeting CFTR directly rather than upstream receptor or signaling pathways is less likely to induce tachyphylaxis. Whether the greater therapeutic action of CFTRact-J027 compared with lubiprostone or linaclotide seen here in mice will translate to humans must await clinical trial data.


The preclinical results here support the testing of CFTRact-J027 or alternative CFTR-targeted activators in constipation in humans. We previously reported an ED50 of 0.5 mg/kg for orally administered CFTRact-J027 in a loperamide model in mice, which translates to a dose of 35 mg for a 70 kg human. The duration of effect for CFTRact-J027 is at least 3-4 h in mice, suggesting that a once a day administration may be adequate for treatment of constipation in humans. Pharmacology studies in mice (12) and the rapid metabolism found here with human hepatic microsomes (t1/2 35 min) predict minimal systemic exposure following oral administration of CFTRact-J027 because of rapid hepatic metabolism probably by a first-pass mechanism, though formal pharmacokinetics measurements will be needed in humans. The minimal systemic exposure is expected to limit the extraintestinal off-target effects of CFTRact-J027, as evidenced by our prior toxicity studies in mice showing no effect of chronic oral high-dose CFTRact-J027 on blood counts, serum chemistries and lung water content (12). A potential side effect of any laxative is diarrhea, which might occur with CFTRact-J027 in a dose-dependent manner and require appropriate dose adjustment.


In conclusion, our results show that a CFTR-targeted small molecule increases intestinal fluid secretion and is efficacious orally in mouse models of acute and chronic constipation. CFTRact-J027 induced enterocyte fluid secretion in human enteroids and showed rapid metabolism in human hepatic microsomes, supporting its utility for human constipation.


REFERENCES (EXAMPLE 5)

[1] Pinto Sanchez M I, Bercik P. Epidemiology and burden of chronic constipation. Canadian Journal of Gastroenterology. 2011; 25(Suppl B): 11B-5B; [2] Menees S, Saad R, Chey W D. Agents that act luminally to treat diarrhoea and constipation. Nature Reviews Gastroenterology Hepatology. 2012; 9(11):661-74; [3] Castro J, Harrington A M, Hughes P A, Martin C M, Ge P, Shea C M, et al. Linaclotide Inhibits Colonic Nociceptors and Relieves Abdominal Pain via Guanylate Cyclase-C and Extracellular Cyclic Guanosine 3′,5′-Monophosphate. Gastroenterology. 2013; 145(6):1334-46.e11; [4] Fei G, Raehal K, Liu S, Qu M-H, Sun X, Wang G-D, et al. Lubiprostone Reverses the Inhibitory Action of Morphine on Intestinal Secretion in Guinea Pig and Mouse. Journal of Pharmacology and Experimental Therapeutics. 2010; 334(1):333-40; [5] Bijvelds M J C, Bot A G M, Escher J C, de Jonge H R. Activation of Intestinal CE Secretion by Lubiprostone Requires the Cystic Fibrosis Transmembrane Conductance Regulator. Gastroenterology. 2009; 137(3):976-85; [6] Chey W D, Webster L, Sostek M, Lappalainen J, Barker P N, Tack J. Naloxegol for Opioid-Induced Constipation in Patients with Noncancer Pain. New England Journal of Medicine. 2014; 370(25):2387-96; [7] Website: www.amitizahcp.com (Access date: June 2016); [8] Website: www.linzesshcp.com (Access date: June 2016); [9] Website: www.movantikhcp.com (Access date: June 2016); [10] Field M, Fromm D, Al-Awqati Q, Greenough W B, III. Effect of Cholera Enterotoxin on Ion Transport across Isolated Ileal Mucosa. The Journal of Clinical Investigation. 1972; 51(4):796-804; [11] Rao M C, Guandalini S, Smith P L, Field M. Mode of Action of Heat-stable Escherichia coli Enterotoxin Tissue and Subcellular Specificities and Role of Cyclic GMP. Biochimica et Biophysica Acta (BBA)—General Subjects. 1980; 632(1):35-46; [12] Cil O, Phuan P W, Lee S, Tan J, Haggie P M, Levin M H, et al. CFTR Activator Increases Intestinal Fluid Secretion and Normalizes Stool Output in a Mouse Model of Constipation. Cellular and Molecular Gastroenterology and Hepatology. 2(3):317-27; [13] Ma T, Vetrivel L, Yang H, Pedemonte N, Zegarra-Moran O, Galietta L J V, et al. High-affinity Activators of Cystic Fibrosis Transmembrane Conductance Regulator (CFTR) Chloride Conductance Identified by High-throughput Screening. Journal of Biological Chemistry. 2002; 277(40):37235-41; [14] Galietta L J V, Springsteel M F, Eda M, Niedzinski E J, By K, Haddadin M J, et al. Novel CFTR Chloride Channel Activators Identified by Screening of Combinatorial Libraries Based on Flavone and Benzoquinolizinium Lead Compounds. Journal of Biological Chemistry. 2001; 276(23): 19723-8; [15] Anitha M, Vijay-Kumar M, Sitaraman S V, Gewirtz A T, Srinivasan S. Gut Microbial Products Regulate Murine Gastrointestinal Motility via Toll-Like Receptor 4 Signaling. Gastroenterology. 2012; 143(4): 1006-16.e4; [16] Foulke-Abel J, In J, Yin J, Zachos N C, Kovbasnjuk O, Estes M K, et al. Human Enteroids as a Model of Upper Small Intestinal Ion Transport Physiology and Pathophysiology. Gastroenterology. 2016; 150(3):638-49.e8; [17] Dekkers J F, Wiegerinck C L, de Jonge H R, Bronsveld I, Janssens H M, de Winter-de Groot K M, et al. A Functional CFTR Assay using Primary Cystic Fibrosis Intestinal Organoids. Nature Medicine. 2013; 19(7):939-45; [18] Webster W. Embryogenesis of the Enteric Ganglia in Normal Mice and in Mice that Develop Congenital Aganglionic Megacolon. Development. 1973; 30(3):573-85; [19] Hosoda K, Hammer R E, Richardson J A, Baynash A G, Cheung J C, Giaid A, et al. Targeted and Natural (Piebald-lethal) Mutations of Endothelin-B Receptor Gene Produce Megacolon Associated with Spotted Coat Color in Mice. Cell. 1994; 79(7): 1267-76; [20] Zarate N, Spencer N J. Chronic constipation: Lessons from Animal Studies. Best Practice & Research Clinical Gastroenterology. 2011; 25(1):59-71; [21] Lipinski C A, Lombardo F, Dominy B W, Feeney P J. Experimental and Computational Approaches to Estimate Solubility and Permeability in Drug Discovery and Development Settings. Advanced Drug Delivery Reviews. 2001; 46(1-3):3-26; [22] Veber D F, Johnson S R, Cheng H-Y, Smith B R, Ward K W, Kopple K D. Molecular Properties That Influence the Oral Bioavailability of Drug Candidates. Journal of Medicinal Chemistry. 2002; 45(12):2615-23; [23] Eckford P D W, Li C, Ramjeesingh M, Bear C E. Cystic Fibrosis Transmembrane Conductance Regulator (CFTR) Potentiator VX-770 (Ivacaftor) Opens the Defective Channel Gate of Mutant CFTR in a Phosphorylation-Dependent but ATP-independent Manner. Journal of Biological Chemistry. 2012; 287(44):36639-49; [24] Lencer W I. Opening CFTR in the Intestine: Flushing on Demand. Cellular and Molecular Gastroenterology and Hepatology. 2(3):256.


Example 6—High-Potency Phenylquinoxalinone CFTR Activators

Abbreviations: CFTR, cystic fibrosis transmembrane conductance regulator; DMF, dimethylformamide; DMSO, dimethyl sulfoxide; FTR, Fischer Rat Thyroid; YFP, yellow fluorescent protein; PBS, phosphate-buffered saline; RT, room temperature; TLC, thin layer chromatography.


Abstract. We previously identified phenylquinoxalinone CFTRact-J027 (4) as a CFTR activator with an EC50 of −200 nM, and demonstrated its therapeutic efficacy in mouse models of constipation. Here, structure-activity studies were done on 36 synthesized phenylquinoxalinone analogs to identify compounds with improved potency and altered metabolic stability. Synthesis of the phenylquinoxalinone core was generally accomplished by condensation of 1,2-phenylenediamines with substituted phenyloxoacetates. Structure-activity studies established, among other features, the privileged nature of a properly positioned nitro moiety on the 3-aryl group. Synthesized analogs showed improved CFTR activation potency compared to 4 with EC50 down to 21 nM and with greater metabolic stability. CFTR activators have potential therapeutic indications in constipation, dry eye, cholestatic liver diseases, and inflammatory lung disorders.


Introduction.


The cystic fibrosis transmembrane conductance regulator (CFTR) is a cAMP-regulated chloride channel expressed in mammalian epithelia in the respiratory, gastrointestinal, and reproductive systems, as well as in exocrine glands and other tissues [1], Loss-of-function mutations in CFTR cause cystic fibrosis, and CFTR over activation causes certain secretory diarrheas including cholera and Travelers' diarrhea [2], CFTR is considered an important drug target, with activators of CFTR of potential benefit for constipation [3,4], dry eye [5], inflammatory lung disorders [6], and cholestatic liver disease; inhibitors of wildtype CFTR may be useful for treatment of certain secretory diarrheas and polycystic kidney disease [7,8]; and correctors and potentiators of mutant CFTRs for treatment of cystic fibrosis [9].


We previously identified by high-throughput screening the phenylquinoxalinone CFTRact-J027 (Cmpd 4; FIG. 21) as a CFTR activator and demonstrated its efficacy in normalizing stool output, hydration, and intestinal transit in a mouse model of opioid-induced constipation [3], Phenylquinoxalinone 4 activated CFTR chloride conductance with an EC50 of −200 nM and showed no apparent off-target actions or toxicity following chronic administration in mice. In a follow-up study [4], Cmpd 4 was shown by patch-clamp and biochemical studies to target CFTR directly, and was demonstrated to activate CFTR in human enterocytes and normalize stool parameters in mouse models of acute and chronic constipation. Side-by-side comparisons of intestinal fluid secretion and stool output in constipation models showed greater efficacy of 4 than supramaximal doses of the FDA-approved drugs lubiprosone and linaclotide.


Here, motivated by the potential therapeutic utility of phenylquinoxalinone-based CFTR activators in constipation and other diseases, we synthesized 36 analogs of phenylquinoxalinone 4 in order to establish structure-activity relationships and to identify compounds with greater potency. Also, while the rapid hepatic metabolism of 4 results in minimal systemic exposure following oral administration in mice, which is desirable for treatment of constipation, we also sought phenylquinoxalinone CFTR activators with greater metabolic stability for treatment of lung and liver disorders where systemic exposure is necessary.


Chemistry


General synthesis of phenylquinoxalinones. Most of the phenylquinoxalinone in this study were expediently synthesized in four steps starting from acetophenones (Scheme 1 following). We generated the phenylquinoxalinone core by condensing o-phenylenediamines with substituted phenyloxoacetates (6), which were synthesized following literature methods [10], Briefly, substituted acetophenone was doubly brominated with bromine in 1,4-dioxane to give 5, then heated in DMSO followed by addition of methanol to give 6. Phenylquinoxalinone 7 was N1-alkylated using K2CO3 and R—X in DMF [11] and pure products (1-3) were obtained via column chromatography.




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Phenylquinoxalinone 1a was prepared as outlined in Scheme 2. Treatment of methyl 3-fluoro-4-nitrobenzoate (8) with methyl 2-cyanoacetate under basic conditions delivered intermediate 9 [12], Subsequent copper(I) iodide-catalyzed aerobic oxidation [12] delivered methyl 2-oxo-2-phenylacetate 10 and, from here, target 1a was prepared in parallel to the chemistry employed in Scheme 1. With 1a in hand, saponification and nitro reduction were accomplished as outlined in Scheme 3 to deliver analogs lb, 1j, and lk.




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Constrained ring phenylquinoxalinone analogs 16 and 20 were prepared as outlined in Scheme 4. 2-Amino-3-nitrophenol was N- and O-alkylated with 1,2-dibromoethane to deliver intermediate 14 and subsequent nitro reduction and condensation of the resulting diamine with 1-acetyl-5-nitroindoline-2,3-dione led smoothly to analog 16 [13], Employing 2-bromo-1-phenylethan-1-one in place of 1,2-dibromoethane and 5-nitroindoline-2,3-dione in place of 1-acetyl-5-nitroindoline-2,3-dione delivered analog 20 [14], Interestingly, the reaction of N-benzyl-1,2-diaminobenzene with 5-fluoroisation (in analogy with the protocol employed to prepare compounds 16, 20 and 4) led to 22 and the attempted deacylation of 21 (X═NO2) led to 23.




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Results and Discussion.


Modifications of the 3-aryl ring. Compound 4 contains a 2-amino-5-nitro phenyl ring at the 3-position of the quinoxalinone core (FIG. 21) and our first effort was to modify this ring. Several compounds (Table 3) were rationally synthesized and their activities were determined using a plate reader assay. The most active compound was CFTRact-J125 (1c), which only lacks the 2-amino group at C2 of the 3-aryl ring compared to 4, and it showed an approximate 10-fold increased potency when compared to 4. We then synthesized a series of analogs retaining this amino group deletion. In contrast to the high activity of lc, compounds without the 3-nitro group had significantly lower activity (1 h), indicating the privileged nature of the 3-nitro group in lc.









TABLE 3





CFTR activation with variation in the 3-arylring (EC50 reported in μM.




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1a







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1b







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1c







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1d







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1e







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1f







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1g







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1h







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1i










Nitro bioisosteres










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1j







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1k







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1l







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1m









Bioisosteric compounds containing —COOR replacements of the —NO2 moiety in the 3-aryl group were synthesized according to Schemes 2 and 3. It was found that carboxylic acid analog 1k was inactive, while methyl ester analog 1j was moderately potent. Combining a 2-NO2 with either a 5-COOMe or a 5-COOH (1a and 1b, respectively) resulted in very low activity. Positional deviation of the nitro group also resulted in reduced activity, as with 2-nitro or 4-nitro analogs 1d and 1e, respectively. Introduction of other functional groups, such as 4-CF3 or 3-Br, in place of the 3-NO2 of 1c also showed low activity (1f and 1g, respectively). Adding a fluorine at C4 of lc (i.e., 1i) reduced activity. Replacements of the nitro group with a bioisosteric nitrile (11) greatly reduced activity, but interestingly, the bioisosteric benzoxadiazole (1m) showed comparable potency to the nitro analog (1c).


Modifications of the quinoxalinone core. Moving forward with lc as the lead, quinoxalinone backbone modifications were undertaken (Table 4). Halogen substitution at the 6-position, such as 6-CI (2b) or 6-Br (2f), showed good activity albeit less than that of lc. Substitution at the 5-, 7-, or 8-positions generally resulted in lower activity. Disubstitution at the 6- and 7-positions (dichloro; 2d/difluoro; 2g/dimethyl; 2i) reduced activity.









TABLE 4





CFTR activation with variation in the quinoxalinone core


(EC50 reported in μM.




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2a









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2b









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2c









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2d









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2e









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2f









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2g









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2h









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2i










Modifications of the N1-substituent. We next modified the N1-benzyl group (Table 5). We reported previously that placing substituents on the benzyl ring was not tolerated [4], However, heterocycle analogs such as thiophenyl (3j), furanyl (3i), and pyridyl (3h) showed comparable activity. Among short chains, allyl and ethyl groups showed moderate activity, but methyl and propyl groups had poor activity (3a-e). Replacing the phenyl with a larger aromatic group, such as naphthyl, significantly reduced activity (3f and 3g).









TABLE 5





CFTR activation with variation in the N1-substituent


(EC50 reported in μM.




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3a









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3b









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3c









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3d









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3e









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3f









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3g









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3h









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3i









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3j










Compounds with constrained rings. Motivated by our prior findings that constrained rings can enhance the activity of a CFTR corrector [15], we next examined two different types of constrained analogs (Scheme 4) with hindered rotation of the N1-alkyl group (16 and 20) or phenyl ring (22 and 23). As previously shown, the N-acetylated version of 4 has very low activity [4]; we therefore attempted to synthesize 16 without an N-acyl group, but both the attempted deacylation of 16 and condensation with 5-nitroisatin failed. The activities of neither 16 (EC50=>10 pM) nor 20 (EC50=0.82 pM) were greater than that of 4 (see Table 6). Phenyl-ring constrained compounds 22 and 23 were unexpected by-products of the deacylation reaction (see Scheme 4 and Table 6). These compounds are purple and red, respectively—a consequence of their extended aromatic systems—and those colors are different from the bright yellow color of most derivatives of 4. Intramolecular heterocycle formation in this system might have been facilitated by the presence of the electron withdrawing CF3 group in the quinoxalinone backbone under these acidic deacylation condition. With other substituents in the quinoxalinone backbone, only small amounts of uncharacterized reddish byproduct formed during the deacylation step, suggesting a minimal amount of by-product formation.









TABLE 6





CFTR activation with constrained ring analogs (EC50 reported in μM.


















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20







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16







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Biology.


In vitro characterization of phenylquinoxalinones. Phenylquinoxalinone CFTR activators with the highest potency as determined by plate-reader assay, lc and CFTRact-J170 (3j; Table 5), were further characterized. Short-circuit current measurements were done using CFTR-expressing FRT cells in the presence of a transepithelial chloride gradient and with permeabilization of the cell basolateral membrane; consequently, current is a direct, linear measure of CFTR chloride conductance. Representative data in FIG. 22 for lc and 3j shows a small increase in current following addition of a low concentration of forskolin, followed by concentration-dependent increases in current following activator additions. EC50 values were determined to be 21 and 70 nM for lc and 3j, respectively.


The CFTR specificity of the most potent compound, lc, was further studied. At 10 μM, lc did not affect the cellular cAMP level (FIG. 23A), nor did it elevate cytoplasmic calcium or inhibit the ATP-stimulated elevation in cytoplasmic calcium (FIG. 23B). In addition, lc at 10 μM neither inhibited nor activated calcium-activated chloride channels in HT-29 cells (FIG. 23C) or in FRT cells expressing TMEM16A (FIG. 23D).


Efficacy of 1c in a loperamide-induced mouse model of acute constipation. We previously demonstrated the efficacy of 4 in a loperamide-induced mouse model of constipation [3,4], Here, the efficacy of lc was tested. Phenylquinoxalinone 1c was administered orally to mice 1-h prior to loperamide, and 3-h stool samples were collected after loperamide. FIG. 24 shows that orally administered 1c fully normalized stool weight, pellet number and hydration with half-maximal effective dose (ED50)<1 mg/kg.


Phenylquinoxalinone 4 was shown previously to have minimal oral bioavailability and rapid metabolism [3,4], Though these properties are favorable for ‘topical’ applications in the treatment of constipation and dry eye in which systemic exposure is not needed, they are not favorable for treatment of liver and lung diseases where systemic exposure and organ accumulation are desired. FIG. 25 shows substantially slower in vitro hepatic microsomal metabolism of lc compared with 4, with nearly 100% of 4 metabolized at 60 min compared with <40% metabolism of lc.


In conclusion, synthesis of 36 phenylquinoxalinones established structure-activity relationships and identified compounds with −10-fold improved potency and greater metabolic stability than reference compound 4. The most potent analog, lc, showed CFTR selectivity and efficacy in a mouse model of acute opioid-induced constipation. CFTR activation by phenylquinoxalinones may have utility in constipation and dry eye, as supported by prior experimental animal data,” as well as in inflammatory lung disorders and hepatic cholestasis.


Experimental Details and Data.



1H NMR was used to establish purity and, based on these spectra, all assayed compounds had ≥95% purity.


CFTR functional assays. Fischer Rat Thyroid (FRT) cells stably co-expressing human wildtype CFTR and the halide-sensitive yellow fluorescent protein (YFP)-H148Q were cultured as described [16], Fluorescence plate reader assays of CFTR function were done as described [16], in which 96-well plates containing near-confluent cell cultures were washed with phosphate-buffered saline (PBS) and incubated for 10 min with PBS containing test compound and 125 nM forskolin. Assays of iodide influx into cells were done in single wells by continuous measurement of YFP (yellow fluorescent protein) fluorescence just for 2 s before (for baseline) and 12 s after addition of an iodide containing solution (final 140 mM iodide). TMEM16A activity assay was done similarly, as described [17], using FRT cells co-expressing YFP and TMEM16A. Activity of non-TMEMI6A CaCC activity was assayed as described [18] in FIT-29 cells expressing YFP. In each assay, iodide influx rate and concentration-dependent curves were computed as described [16-18], For short-circuit current measurement cells were cultured on porous filters and current was measured in the presence of a transepithelial chloride gradient and following permeabilization of the basolateral membrane, as described [19], Cyclic AMP and cytoplasmic calcium measurement were done as described [17,20].


Loperamide model of acute constipation in mice. Mouse experiments were approved by UCSF Institutional Animal Care and Use Committee. As described [3], CD1 mice (age 8-10 weeks) were administered 0.3 mg/kg loperamide intraperitoneally (ip) and placed in metabolic cages with free access to food and water. Stool samples were collected for 3 h for determination of total stool weight, number of fecal pellets, and stool water content (by wet and dry weight measurements). Compound lc (or vehicle control) was administered orally 1-h prior to loperamide.


In vitro metabolic stability. Test compound (at 5 μM) was incubated for specified times at 37° C. with mouse liver microsomes (1 mg protein/m1; Sigma-Aldrich, St. Louis, Mo.) in potassium phosphate buffer containing 1 mM NADPH, as described [3], Following ethyl acetate extraction, non-metabolized parent compound was assayed by LC/MS.


General procedure for synthesis of dibromophenylpropanedione derivatives (5). 1,4-Dioxane (15 mL) was bubbled with N2 for 10 min with stirring. Br2 (2 mL, 39 mmol) was added and the solution was stirred for 30 min with slow N2 bubbling. Substituted acetophenone (12 mmol) was dissolved in 1,4-dioxane (20 mL) and added. The mixed solution was stirred for 3 h, poured in water, and extracted with ethyl acetate. The organic layer was washed with water (3×) and brine, then dried over magnesium sulfate. Solvent was removed in vacuo to yield reddish oil of 5, which was used for next step without further purification.


General procedure for synthesis of oxophenylacetate derivatives (6). Anhydrous DMSO (15 mL) was added to the oily product of 5, and heated at 75° C. overnight. The solution was cooled to RT, and methanol (10 mL) was added and stirred overnight. The solution was poured in water and extracted with ethyl acetate. The organic ayer was washed with water (3×) and brine, and dried over magnesium sulfate. The brown oily product was used in the next step without purification.


General procedure for synthesis of N—H phenylquinoxalinone derivatives (7). Substituted phenyloxoacetate (6, 1 mmol) was mixed with o-phenylenediamine (1 mmol) in toluene (20 mL), and heated at 70° C. overnight. The precipitate that formed was collected by filtration, triturated with toluene and hexane, and used in the next step without purification.


General procedure for N-alkylation of phenyquinaxolinone (1-3). Compound 7 (0.5 mmol) was dissolved in DMF (20 mL), benzyl bromide (0.6 mmol) and K2CO3 (1 mmol) were added, and the mixture was stirred overnight. The solution was diluted with water, and extracted with ethyl acetate. The organic layer was washed with water three times. The organic layer was washed with brine and dried over magnesium sulfate. The final product obtained after solvent evaporation was purified by flash column chromatography.


Methyl 3-(4-benzyl-3-oxo-3,4-dihydroquinoxalin-2-yl)-4-nitro benzoate (1a). Methyl 3-fluoro-4-nitrobenzoate (8, 1.0 g, 5 mmol) was mixed with Cs2CO3 (3.3 g, 10 mmol) in DMSO (20 mL). Methyl cyanoacetate (1.0 g, 10 mmol) was added and the solution was heated at 130° C. for 4 h and then maintained at 90° C. overnight. Upon cooling, the reaction mixture was extracted with ethyl acetate and the organic layer was washed with 1N HCl, water (3×), and brine. After drying over magnesium sulfate and filtration, the solvent was removed in vacuo to yield 9 as a purple oil, which was used without purification in the next step.


Crude intermediate 9 (1.8 g, 6.5 mmol) was dissolved in acetonitrile (20 mL), and Cul (1 g, 5.3 mmol) and 1,10-phenanthroline (0.23 g, 1.3 mmol) were added. The mixture was reacted at 50° C. overnight with an O2 balloon overnight. After cooling, the solution was filtered through CELITE® and concentrated in vacuo. The product was purified by flash column chromatography to yield colorless 10 after solvent evaporation. Yield=0.66 g (38%).


Intermediate 10 (163 mg, 0.61 mmol) was mixed with o-phenylenediamine (78 mg, 0.72 mmol) in toluene (30 mL) and heated at 70° C. overnight. The resulting tan precipitate of 11 was collected by filtration, triturated with toluene and hexane, and air dried; it was used in the next step without purification. Yield=185 mg (93%).


Intermediate 11 (185 mg, 0.57 mmol) was mixed with benzyl bromide (150 mg, 0.88 mmol) and K2CO3 (170 mg, 1.2 mmol) in DMF (10 mL) and stirred overnight at RT. After dilution with water, the solution was extracted with ethyl acetate, washed with water (3×) and brine, and dried over MgSO4. Solvent removal and purification by column chromatography gave la. Yield=149 mg (63%). 1H NMR (400 MHz, CDCl3) δ 8.40 (d, J=1.8 Hz, 1H), 8.22 (dd, J=8.5, 1.9 Hz, 1H), 8.13 (d, J=8.4 Hz, 1H), 7.89 (dd, J=8.0, 1.6 Hz, 1H), 7.50-7.37 (m, 1H), 7.36-7.06 (m, 7H), 5.44 (s, 2H), 3.92 (s, 3H). 13C NMR (101 MHz, CDCl3) δ 164.83, 154.65, 154.19, 151.57, 134.82, 134.73, 133.30, 133.17, 132.98, 131.80, 131.61, 131.28, 130.79, 129.05, 127.83, 126.89, 124.22, 124.20, 114.82, 52.91, 46.25. HRMS [C18H15N306+H]+: calcd 416.1247/found 416.1253.


3-(4-Benzyl-3-oxo-3,4-dihydroquinoxalin-2-yl)-4-nitrobenzoic acid (1b). Compound 1a (10 mg, 0.024 mmol) was dissolved in hot ethanol (30 mL). Sodium hydroxide (0.1 g, 2.5 mmol) dissolved in water (5 mL) was added and the mixture stirred for 1 h. The cooled solution was acidified with 1 N HCl and extracted with ethyl acetate. The organic layer was washed with water and brine, then dried over MgSO4. Solvent was removed in vacuo, and product was purified by flash column chromatography. Yield=9 mg (93%). 1H NMR (400 MHz, DMSO-d6) δ 8.39 (s, 1H), 8.30 (d, J=1.4 Hz, 2H), 7.98 (dd, J=8.0, 1.4 Hz, 1H), 7.62 (ddd, J=8.6, 7.2, 1.5 Hz, 1H), 7.56-7.39 (m, 2H), 7.39-7.09 (m, 5H), 5.53 (s, 2H). 13C NMR (101 MHz, DMSO-d6) δ 165.89, 154.75, 154.16, 151.48, 135.90, 133.43, 133.14, 132.95, 132.23, 131.82, 131.49, 130.53, 129.19, 127.93, 127.19, 124.88, 124.65, 115.88, 45.52. HRMS [C22H15N306+H]+: calcd 402.1090/found 402.1085.


1-Benzyl-3-(3-nitrophenyl)quinoxalin-2(1H)-one (1c). Yield=150 mg (70%). 1H NMR (400 MHz, CDCl3) δ 9.37 (t, J=2.0 Hz, 1H), 8.88 (ddd, J=7.9, 1.7, 1.1 Hz, 1H), 8.37 (ddd, J=8.3, 2.3, 1.1 Hz, 1H), 8.03 (dd, J=8.0, 1.5 Hz, 1H), 7.70 (t, J=8.0 Hz, 1H), 7.55 (ddd, J=8.6, 7.3, 1.6 Hz, 1H), 7.47-7.30 (m, 7H), 5.63 (s, 2H). 13C NMR (151 MHz, CDCl3) δ 154.51, 151.07, 148.25, 137.44, 135.48, 135.02, 133.08, 132.97, 131.27, 130.92, 129.00, 128.93, 127.82, 126.92, 124.70, 124.13, 114.50, 109.99, 46.23. HRMS [C21Fl16N303+H]+: calcd 358.1192/found 358.1188.


1-Benzyl-3-(2-nitrophenyl)quinoxalin-2(1H)-one (1d). Yield=108 mg (69%). 1H NMR (400 MHz, CDCl3) δ 8.18 (dd, J=8.1, 1.1 Hz, 1H), 7.97 (dd, J=8.0, 1.5 Hz, 1H), 7.87-7.73 (m, 2H), 7.65 (ddd, J=8.7, 7.0, 2.0 Hz, 1H), 7.48 (ddd, J=8.6, 7.3, 1.6 Hz, 1H), 7.42-7.24 (m, 7H), 5.52 (s, 2H). 13C NMR (101 MHz, CDCl3) δ 155.76, 154.35, 149.16, 135.01, 133.82, 133.30, 132.94, 131.72, 131.66, 131.00, 130.58, 129.04, 127.78, 126.96, 126.92, 124.09, 124.08, 114.83, 46.19. HRMS [C21H15N303+H]+: calcd 358.1192/found 358.1187.


1-Benzyl-3-(4-nitrophenyl)quinoxalin-2(1H)-one (1e). Yield=94 mg (49%). 1H NMR (400 MHz, CDCl3) δ 8.76-8.56 (m, 2H), 8.42-8.23 (m, 2H), 8.01 (dd, J=8.0, 1.5 Hz, 1H), 7.56 (ddd, J=8.6, 7.3, 1.6 Hz, 1H), 7.47-7.29 (m, 7H), 5.62 (s, 2H). 13C NMR (101 MHz, CDCl3) δ 154.55, 151.50, 148.67, 141.76, 134.97, 133.20, 133.02, 131.58, 131.08, 130.67, 129.05, 127.90, 126.93, 124.25, 123.14, 114.58, 46.29. HRMS [C21H15N303+H]+: calcd 358.1192/found 358.1187.


1-Benzyl-3-(4-(trifluoromethyl)phenyl)quinoxalin-2(1H)-one (1f). Yield=120 mg (83%). 1H NMR (600 MHz, CDCl3) δ 8.53 (d, J=8.2 Hz, 2H), 7.98 (dd, J=8.0, 1.6 Hz, 1H), 7.75 (d, J=8.2 Hz, 2H), 7.50 (ddd, J=8.6, 7.2, 1.6 Hz, 1H), 7.42-7.26 (m, 7H), 5.59 (s, 2H). 13C NMR (151 MHz, CDCl3) δ 154.61, 152.55, 139.23, 135.16, 133.25, 132.96, 131.91 (q, JC-F=33 Hz), 130.90, 130.85, 129.97, 128.93, 127.74, 126.92, 124.88 (br), 124.23 (q, JC-F=325 Hz), 123.92, 114.40, 46.18. HRMS [C22H15F3N2O+H]+: calcd 381.1215/found 381.1206.


1-Benzyl-3-(3-bromophenyl)quinoxalin-2(1H)-one (1g). Yield=295 mg (75%). 1H NMR (400 MHz, CDCl3) δ 8.62 (t, J=1.8 Hz, 1H), 8.42 (dt, J=7.9, 1.3 Hz, 1H), 7.99 (dd, J=8.0, 1.5 Hz, 1H), 7.65 (ddd, J=8.0, 2.1, 1.0 Hz, 1H), 7.50 (ddd, J=8.6, 7.3, 1.6 Hz, 1H), 7.44-7.29 (m, 8H), 5.60 (s, 2H). 13C NMR (101 MHz, CDCl3) δ 154.58, 152.33, 137.85, 135.18, 133.32, 133.20, 132.83, 132.49, 130.82, 130.76, 129.60, 129.00, 128.35, 127.78, 126.93, 123.99, 122.29, 114.42, 46.20. HRMS [C21H15BrN2O+H]+: calcd 391.0446/found 391.0442.


1-Benzyl-3-phenylquinoxalin-2(1H)-one (1h). Yield=62 mg (44%). 1H NMR (400 MHz, CDCl3) δ 8.40 (ddd, J=6.3, 2.9, 1.5 Hz, 2H), 7.99 (dd, J=8.0, 1.5 Hz, 1H), 7.53 (tt, J=3.9, 2.4 Hz, 3H), 7.48 (ddd, J=8.6, 7.3, 1.6 Hz, 1H), 7.40-7.18 (m, 7H), 5.61 (s, 2H). 13C NMR (101 MHz, CDCl3) δ 154.80, 154.23, 136.01, 135.37, 133.38, 132.76, 130.60, 130.45, 130.32, 129.66, 128.95, 128.13, 127.71, 126.99, 123.81, 114.36, 46.15. HRMS [C21H16N2O+H]+: calcd 313.1341/found 313.1341.


1-Benzyl-3-(4-fluoro-3-nitrophenyl)quinoxalin-2(1H)-one (1i). Yield=127 mg (71%). 3H NMR (600 MHz, CDCl3) δ 9.31 (dd, J=7.5, 2.3 Hz, 1H), 8.87 (ddd, J=8.8, 4.3, 2.3 Hz, 1H), 7.98 (dd, J=8.0, 1.5 Hz, 1H), 7.52 (ddd, J=8.6, 7.2, 1.5 Hz, 1H), 7.45-7.36 (m, 2H), 7.36-7.31 (m, 3H), 7.28 (dt, J=9.7, 3.1 Hz, 3H), 5.59 (s, 2H). 13C NMR (75 MHz, CDCl3) δ 158.19, 154.54 (d, JC-F=12 Hz), 149.65, 136.75, 136.63, 134.89, 132.92 (br), 132.79 (br), 131.41, 130.86, 129.03, 127.88, 127.67 (br), 126.87, 124.28, 118.06, 117.79, 114.56. 46.25. HRMS [C21H14FN303+H]+: calcd 376.1098/found 376.1092.


Methyl 4-amino-3-(4-benzyl-3-oxo-3,4-dihydroquinoxalin-2-yl)benzoate (1j). Compound la (120 mg, 0.29 mmol) was dissolved in hot ethanol (50 mL). After cooling, a saturated NH4Cl solution (30 mL) and Zn dust (1 g) were added and the mixture stirred for 3 h. The solution was filtered through CELITE®, concentrated, and purified by flash column chromatography. Yield=100 mg (90%). 1H NMR (600 MHz, CDCl3) δ 9.26-8.97 (m, 1H), 7.91 (ddd, J=8.6, 2.1, 0.9 Hz, 1H), 7.83 (dt, J=8.0, 1.2 Hz, 1H), 7.45 (ddt, J=8.5, 7.2, 1.2 Hz, 1H), 7.38-7.11 (m, 7H), 6.77 (dd, J=8.6, 0.8 Hz, 1H), 6.18 (s, 2H), 5.59 (s, 2H), 3.87 (d, J=0.9 Hz, 3H). 13C NMR (151 MHz, CDCl3) δ 154.68, 154.23, 151.69, 135.24, 134.67, 132.68, 132.44, 132.17, 130.20, 129.51, 128.90, 127.67, 126.94, 123.79, 118.49, 117.26, 116.47, 114.44, 51.61, 46.44. HRMS [C23H19N303+H]+: calcd 386.1505/found 386.1509.


4-Amino-3-(4-benzyl-3-oxo-3,4-dihydroquinoxalin-2-yl)benzoic acid (1k). Compound 1j (20 mg, 0.052 mmol) was dissolved in methanol (100 mL) at 85° C. KOH (0.2 g, 3.6 mmol) and water (30 mL) were added and the solution refluxed overnight. Solvent was removed in vacuo, and acidified with 1 N HCl. The product was extracted with dichloromethane. Yield=13 mg (67%). 3H NMR (600 MHz, acetone-d6) δ 9.20 (d, J=2.1 Hz, 1H), 7.89 (dd, J=8.0, 1.5 Hz, 1H), 7.84 (dd, J=8.6, 2.1 Hz, 1H), 7.51 (ddd, J=8.5, 7.1, 1.5 Hz, 1H), 7.47 (dd, J=8.5, 1.4 Hz, 1H), 7.43-7.30 (m, 5H), 7.30-7.19 (m, 1H), 7.08 (s, 2H), 6.93 (d, J=8.7 Hz, 1H), 5.67 (s, 2H). 13C NMR (101 MHz, acetone-d6) δ 166.89, 154.55, 154.34, 152.99, 136.23, 135.27, 132.57, 132.28, 132.11, 130.02, 129.31, 128.70, 127.32, 126.98, 123.52, 116.81, 116.56, 115.85, 114.84, 45.73. HRMS [C22H17N3 03+H]+: calcd 372.1348/found 372.1351.


3-(4-Benzyl-3-oxo-3,4-dihydroquinoxalin-2-yl)benzonitrile (11). Yield=27 mg (62%). 3H NMR (400 MHz, CDCI3) δ 8.81 (t, J=1.7 Hz, 1H), 8.72 (dt, J=8.1, 1.5 Hz, 1H), 7.97 (dd, J=8.0, 1.6 Hz, 1H), 7.76 (dq, J=7.7, 1.4 Hz, 1H), 7.60 (td, J=7.9, 1.8 Hz, 1H), 7.51 (ddd, J=8.6, 7.3, 1.6 Hz, 1H), 7.41-7.26 (m, 7H), 5.58 (s, 2H). 13C NMR (101 MHz, CDCI3) δ 154.54, 151.35, 137.00, 135.02, 133.85, 133.45, 133.13, 132.93, 131.27, 130.90, 129.04, 128.92, 127.88, 126.94, 124.20, 118.73, 114.53, 112.46, 46.26. HRMS [C22H16N3O+H]+: calcd 338.1293/found 338.1290.


3-(Benzo[c][1,2,5]oxadiazol-5-yl)-1-benzylquinoxalin-2(1H)-one (1m). Yield=30 mg (75%). 1H NMR (400 MHz, CDCl3) δ 9.37-9.25 (m, 1H), 8.83 (ddd, J=7.8, 1.7, 1.1 Hz, 1H), 8.34 (ddd, J=8.2, 2.4, 1.1 Hz, 1H), 8.00 (dd, J=8.0, 1.4 Hz, 1H), 7.71-7.55 (m, 3H), 7.42 (ddd, J=8.3, 7.0, 1.4 Hz, 1H), 7.25 (dd, J=5.2, 1.3 Hz, 2H), 7.20 (dt, J=3.5, 1.0 Hz, 1H), 6.97 (dd, J=5.1, 3.5 Hz, 1H), 5.70 (s, 2H). 13C NMR (101 MHz, CDCl3) δ 154.04, 151.18, 148.25, 137.33, 136.88, 135.52, 133.15, 132.49, 131.35, 131.18, 129.04, 127.58, 126.85, 126.01, 124.84, 124.70, 124.31, 113.96, 41.24. HRMS [C21H14N402+H]+: calcd 355.1195/found 355.1207.


1-Benzyl-7-chloro-3-(3-nitrophenyl)quinoxalin-2(1H)-one (2a). Yield=31 mg (15%). 3H NMR (400 MHz, CDCl3) δ 9.35 (t, J=2.0 Hz, 1H), 8.86 (dt, J=7.9, 1.3 Hz, 1H), 8.36 (ddd, J=8.2, 2.4, 1.1 Hz, 1H), 7.99-7.85 (m, 1H), 7.68 (t, J=8.0 Hz, 1H), 7.44-7.30 (m, 7H), 5.56 (s, 2H). 13C NMR (101 MHz, CDCl3) δ 154.27, 151.03, 148.24, 137.44, 137.07, 135.52, 134.44, 133.77, 131.97, 131.58, 129.19, 129.09, 128.12, 126.95, 125.02, 124.79, 124.71, 114.47, 46.42. HRMS [C21H14ClN303+H]+: calcd 392.0802/found 392.0810.


1-Benzyl-6-chloro-3-(3-nitrophenyl)quinoxalin-2(1H)-one (2b). Yield=56 mg (31%). 3H NMR (400 MHz, CDCl3) δ 9.37 (t, J=2.0 Hz, 1H), 8.87 (dt, J=7.9, 1.3 Hz, 1H), 8.39 (ddd, J=8.2, 2.4, 1.1 Hz, 1H), 8.02 (d, J=2.4 Hz, 1H), 7.70 (t, J=8.0 Hz, 1H), 7.49 (dd, J=9.0, 2.4 Hz, 1H), 7.42-7.20 (m, 6H), 5.60 (s, 2H). 13C NMR (101 MHz, CDCl3) δ 154.22, 152.30, 148.24, 137.00, 135.59, 134.61, 133.57, 131.59, 131.31, 130.09, 129.60, 129.15, 129.11, 128.06, 126.85, 125.19, 124.86, 115.71, 46.44. HRMS [C21H14ClN303+H]+: calcd 392.0802/found 392.0819.


1-Benzyl-5-chloro-3-(3-nitrophenyl)quinoxalin-2(1H)-one (2c). Yield=8 mg (8%). 1H NMR (400 MHz, CDCl3) δ 9.51 (t, J=2.0 Hz, 1H), 8.96 (dt, J=7.9, 1.4 Hz, 1H), 8.39 (ddd, J=8.2, 2.4, 1.1 Hz, 1H), 7.71 (t, J=8.1 Hz, 1H), 7.57-7.40 (m, 2H), 7.40-7.18 (m, 6H), 5.63 (s, 2H). 13C NMR (101 MHz, CDCl3) δ 154.25, 150.92, 148.29, 137.14, 135.84, 135.73, 134.66, 134.45, 131.23, 129.73, 129.16, 129.12, 128.01, 126.80, 125.26, 125.10, 125.03, 113.41, 46.67. HRMS [C21H14ClN303+H]+: calcd 392.0802/found 392.0813.


1-Benzyl-6,7-dichloro-3-(3-nitrophenyl)quinoxalin-2(1H)-one (2d). Yield=13 mg (31%). 1H NMR (400 MHz, CDCl3) δ 9.35 (t, J=2.0 Hz, 1H), 8.86 (ddt, J=7.9, 2.8, 1.3 Hz, 1H), 8.46-8.28 (m, 1H), 8.11 (s, 1H), 7.70 (td, J=8.1, 3.8 Hz, 1H), 7.46 (s, 1H), 7.43-7.28 (m, 5H), 5.56 (d, J=6.8 Hz, 2H). 13C NMR (101 MHz, CDCI3) δ 154.00, 152.23, 148.25, 136.73, 135.57, 134.16, 132.21, 132.08, 131.98, 131.53, 129.28, 129.18, 128.27, 126.90, 125.35, 124.85, 124.73, 115.94, 46.56. HRMS [C11H13Cl2N303+H]+: calcd 426.0412/found 426.0405.


1-Benzyl-7-bromo-3-(3-nitrophenyl)quinoxalin-2(1H)-one (2e). Yield=47 mg (15%). 1H NMR (400 MHz, CDCl3) δ 9.35 (t, J=2.0 Hz, 1H), 8.86 (dt, J=7.9, 1.3 Hz, 1H), 8.37 (dd, J=8.4, 2.3 Hz, 1H), 7.86 (d, J=8.3 Hz, 1H), 7.69 (t, J=8.1 Hz, 1H), 7.52 (d, J=8.5 Hz, 2H), 7.46-7.29 (m, 5H), 5.56 (s, 2H). 13C NMR (101 MHz, CDCl3) δ 154.22, 151.28, 148.25, 137.08, 135.52, 134.44, 133.89, 132.07, 131.89, 129.20, 129.11, 128.13, 127.65, 126.97, 125.69, 125.05, 124.73, 117.46, 46.40. HRMS [C21H14BrN303+H]+: calcd 436.0297/found 436.0291.


1-Benzyl-6,7-difluoro-3-(3-nitrophenyl)quinoxalin-2(1H)-one (2g). Yield=13 mg (10%). 1H NMR (400 MHz, CDCl3) δ 9.35 (t, J=2.0 Hz, 1H), 8.85 (dt, J=7.9, 1.4 Hz, 1H), 8.38 (ddd, J=8.2, 2.4, 1.1 Hz, 1H), 7.82 (dd, J=10.0, 8.2 Hz, 1H), 7.70 (t, J=8.1 Hz, 1H), 7.47-7.22 (m, 5H), 7.15 (dd, J=11.3, 7.0 Hz, 1H), 5.55 (s, 2H). 13C NMR (101 MHz, CDCl3) δ 154.16, 152.20 (dd, JC-F=257, 15 Hz), 151.47, 148.25, 147.15 (dd, JC-F=250, 15 Hz), 136.87, 135.49, 134.17, 130.27 (br), 129.41 (br), 129.28, 129.15, 128.26, 126.85, 125.17, 124.73, 118.26 (dd, JC-F=18, 2 Hz), 103.22 (d, JC-F=23 Hz), 46.87. HRMS [C21H13F2N303+H]+: calcd 394.1003/found 394.0996.


1-Benzyl-8-methyl-3-(3-nitrophenyl)quinoxalin-2(1H)-one (2h). Yield=36 mg (28%). 1H NMR (600 MHz, CDCl3) δ 9.41 (s, 1H), 8.91 (dt, J=7.9, 1.3 Hz, 1H), 8.43-8.10 (m, 1H), 7.66 (t, J=8.0 Hz, 1H), 7.50-7.20 (m, 8H), 5.60 (s, 2H), 2.79 (s, 3H). 13C NMR (151 MHz, CDCl3) δ 154.44, 148.96, 148.33, 139.84, 137.88, 135.41, 135.20, 133.19, 131.65, 131.10, 128.92, 128.87, 127.70, 126.84, 125.30, 124.69, 124.54, 112.42, 46.31, 17.59. HRMS [C22H17N303+H]+: calcd 372.1348 found 372.1343.


1-Benzyl-6,7-dimethyl-3-(3-nitrophenyl)quinoxalin-2(1H)-one (2i). Yield=13 mg (31%). 1H NMR (400 MHz, CDCl3) δ 9.35 (t, J=2.0 Hz, 1H), 8.86 (dt, J=7.8, 1.4 Hz, 1H), 8.33 (ddd, J=8.2, 2.4, 1.1 Hz, 1H), 7.77 (s, 1H), 7.66 (t, J=8.0 Hz, 1H), 7.43-7.22 (m, 5H), 7.13 (s, 1H), 5.59 (s, 2H), 2.38 (d, J=1.2 Hz, 6H). 13C NMR (101 MHz, CDCl3) δ 154.59, 149.83, 148.21, 141.67, 137.78, 135.44, 135.23, 133.39, 131.66, 131.12, 130.88, 129.00, 128.93, 127.76, 126.91, 124.59, 124.47, 114.91, 46.11, 20.84, 19.21. HRMS [C23H19N303+H]+: calcd 386.1505/found 386.1499.


1-Benzyl-6-bromo-3-(3-nitrophenyl)quinoxalin-2(1H)-one (2j). Yield=106 mg (34%). 3H NMR (400 MHz, CDCl3) δ 9.44-9.22 (m, 1H), 8.87 (dt, J=7.9, 1.4 Hz, 1H), 8.38 (ddd, J=8.2, 2.4, 1.2 Hz, 1H), 8.18 (d, J=2.3 Hz, 1H), 7.70 (t, J=8.1 Hz, 1H), 7.61 (dd, J=8.9, 2.3 Hz, 1H), 7.44-7.26 (m, 5H), 7.23 (d, J=9.0 Hz, 1H), 5.59 (s, 2H). 13C NMR (101 MHz, CDCl3) δ 154.22, 152.22, 148.24, 136.98, 135.59, 134.58, 134.02, 133.86, 133.18, 132.02, 129.14, 128.07, 126.97, 126.85, 125.20, 124.86, 116.82, 115.98, 46.41. HRMS [C21H14BrN303+H]+: calcd 436.0297/found 436.0290.


3-(3-Nitrophenyl)quinoxalin-2(1H)-one (3a). Yield=220 mg (75%). 1H NMR (400 MHz, DMSO-d6) δ 12.76 (s, 1H), 9.31-9.12 (m, 1H), 8.78 (ddd, J=7.9, 1.7, 1.1 Hz, 1H), 8.38 (ddd, J=8.2, 2.4, 1.1 Hz, 1H), 7.96-7.88 (m, 1H), 7.82 (t, J=8.0 Hz, 1H), 7.71-7.48 (m, 1H), 7.47-7.25 (m, 2H). 13C NMR (101 MHZ, DMSO-d6) δ 155.02, 152.12, 147.99, 137.43, 135.81, 132.85, 132.34, 131.58, 130.08, 129.52, 125.19, 124.22, 124.15, 115.77. HRMS [C14H9N303+H]+: calcd 268.0722/found 268.0713.


1-Methyl-3-(3-nitrophenyl)quinoxalin-2(1H)-one (3b). Yield=39 mg (74%). 1H NMR (600 MHz, CDCl3) δ 9.29 (s, 1H), 8.79 (dt, J=7.9, 1.4 Hz, 1H), 8.33 (ddd, J=8.2, 2.3, 1.1 Hz, 1H), 7.99 (dd, J=8.0, 1.5 Hz, 1H), 7.74-7.54 (m, 2H), 7.54-7.32 (m, 2H), 3.81 (s, 3H). 13C NMR (151 MHz, CDCl3) δ 154.43, 151.10, 148.27, 137.51, 135.36, 133.59, 132.86, 131.25, 130.83, 128.89, 124.65, 124.64, 124.05, 113.68, 29.34. HRMS [C15H11N303+H]+: calcd 282.0879/found 282.0870.


1-Ethyl-3-(3-nitrophenyl)quinoxalin-2(1H)-one (3c). Yield=54 mg (70%). 1H NMR (400 MHz, CDCl3) δ 9.44-9.14 (m, 1H), 8.83 (ddd, J=7.9, 1.7, 1.1 Hz, 1H), 8.34 (ddd, J=8.2, 2.4, 1.1 Hz, 1H), 8.09-7.88 (m, 1H), 7.77-7.58 (m, 2H), 7.53-7.36 (m, 2H), 4.44 (q, J=7.2 Hz, 2H), 1.47 (t, J=7.2 Hz, 3H). 13C NMR (101 MHz, CDCl3) δ 153.96, 151.05, 148.19, 137.50, 135.49, 133.16, 132.53, 131.32, 131.10, 128.97, 124.71, 123.96, 113.61, 37.80, 12.44. HRMS [C16H13N303+H]+: calcd 296.1035/found 296.1037.


1-Propyl-3-(3-nitrophenyl)quinoxalin-2(1H)-one (3d). Yield=13 mg (23%). 1H NMR (600 MHz, CDCl3) δ 9.30 (t, J=1.9 Hz, 1H), 8.80 (dt, J=7.9, 1.3 Hz, 1H), 8.32 (ddd, J=8.1, 2.3, 1.1 Hz, 1H), 7.99 (dd, J=8.0, 1.4 Hz, 1H), 7.73-7.55 (m, 2H), 7.52-7.32 (m, 2H), 4.38-4.17 (m, 2H), 1.87 (hept, J=7.5 Hz, 2H), 1.10 (t, J=7.4 Hz, 3H). 13C NMR (151 MHz, CDCl3) δ 154.18, 151.04, 148.25, 137.55, 135.40, 133.11, 132.82, 131.14, 131.04, 128.86, 124.67, 124.61, 123.85, 113.72, 44.19, 20.67, 11.34. HRMS [C17H15N303+H]+: calcd 310.1192/found 310.1182.


1-Allyl-3-(3-nitrophenyl)quinoxalin-2(1H)-one (3e). Yield=91 mg (79%). 1H NMR (400 MHz, CDCl3) δ 9.34 (t, J=2.0 Hz, 1H), 8.92-8.73 (m, 1H), 8.35 (ddd, J=8.2, 2.4, 1.1 Hz, 1H), 8.02 (dd, J=8.0, 1.5 Hz, 1H), 7.77-7.54 (m, 2H), 7.51-7.32 (m, 2H), 6.02 (ddt, J=17.3, 10.4, 5.2 Hz, 1H), 5.42-5.15 (m, 2H), 5.03 (dt, J=5.2, 1.8 Hz, 2H). 13C NMR (101 MHz, CDCl3) δ 154.02, 151.05, 148.20, 137.41, 135.51, 133.01, 132.81, 131.28, 130.92, 130.36, 128.99, 124.77, 124.71, 124.15, 118.44, 114.30, 44.88. HRMS [C17H13N303+H]+: calcd 308.1035/found 308.1036.


1-(Naphthalen-1-ylmethyl)-3-(3-nitrophenyl)quinoxalin-2(1H)-one (3f). Yield=54 mg (35%). 1H NMR (600 MHz, CDCl3) δ 9.39 (t, J=2.0 Hz, 1H), 8.89 (dt, J=7.9, 1.4 Hz, 1H), 8.32 (ddd, J=8.3, 2.4, 1.1 Hz, 1H), 8.14 (d, J=8.4 Hz, 1H), 8.08-8.01 (m, 1H), 7.94 (dd, J=8.3, 1.2 Hz, 1H), 7.78 (d, J=8.1 Hz, 1H), 7.71-7.62 (m, 2H), 7.59 (ddd, J=8.1, 6.9, 1.1 Hz, 1H), 7.46-7.33 (m, 2H), 7.32-7.22 (m, 1H), 7.08 (dd, J=8.0, 1.6 Hz, 1H), 6.83 (dd, J=7.3, 1.2 Hz, 1H), 6.04 (s, 2H). 13C NMR (151 MHz, CDCl3) δ 154.50, 150.92, 148.33, 137.43, 135.48, 133.92, 133.15, 133.12, 131.33, 130.85, 130.52, 129.24, 129.17, 128.91, 128.19, 128.17, 126.71, 126.12, 125.38, 124.73, 124.20, 122.30, 122.07, 114.77, 44.04. HRMS [C25H17N303+H]+: calcd 408.1348/found 408.1342.


1-(Naphthalen-2-ylmethyl)-3-(3-nitrophenyl)quinoxalin-2(1H)-one (3g). Yield=80 mg (75%). 1H NMR (400 MHz, CDCl3) δ 9.40 (t, J=2.0 Hz, 1H), 8.91 (ddd, J=7.9, 1.7, 1.1 Hz, 1H), 8.38 (ddd, J=8.2, 2.4, 1.1 Hz, 1H), 8.09-7.98 (m, 1H), 7.91-7.80 (m, 2H), 7.78 (dd, J=6.2, 3.4 Hz, 1H), 7.74-7.65 (m, 2H), 7.57-7.44 (m, 4H), 7.41 (ddd, J=8.3, 7.6, 1.2 Hz, 2H), 5.79 (s, 2H). 13C NMR (101 MHz, CDCl3) δ 154.64, 151.22, 148.26, 137.47, 135.59, 133.33, 133.16, 132.99, 132.85, 132.47, 131.39, 130.98, 129.06, 127.75, 126.53, 126.24, 125.72, 124.86, 124.79, 124.72, 124.27, 114.63, 46.52. HRMS [C25H17N303+H]+: calcd 408.1348 found 408.1339.


3-(3-Nitrophenyl)-1-(pyridin-2-ylmethyl)quinoxalin-2(1H)-one (3h). Yield=82 mg (90%). 1H NMR (400 MHz, CDCl3) δ 9.37 (t, J=2.0 Hz, 1H), 8.86 (dt, J=7.9, 1.4 Hz, 1H), 8.61 (dt, J=4.8, 1.4 Hz, 1H), 8.36 (ddd, J=8.2, 2.3, 1.1 Hz, 1H), 8.01 (dd, J=8.1, 1.3 Hz, 1H), 7.75-7.62 (m, 2H), 7.62-7.51 (m, 2H), 7.41 (ddd, J=8.2, 6.5, 2.0 Hz, 1H), 7.34 (d, J=7.9 Hz, 1H), 7.24 (ddd, J=7.5, 4.9, 1.1 Hz, 1H), 5.73 (s, 2H). 13C NMR (101 MHz, CDCl3) δ 155.11, 154.53, 151.10, 149.49, 148.23, 137.43, 137.27, 135.52, 133.10, 131.43, 130.79, 129.03, 124.82, 124.74, 124.31, 122.98, 122.23, 115.06, 48.25. HRMS [C20H14N403+H]+: calcd 359.1144/found 359.1138.


1-(Furan-2-ylmethyl)-3-(3-nitrophenyl)quinoxalin-2(1H)-one (3i). Yield=238 mg (67%)8H NMR (400 MHz, CDCl3) δ 9.32 (t, J=2.0 Hz, 1H), 8.83 (dt, J=7.8, 1.4 Hz, 1H), 8.34 (ddd, J=8.2, 2.3, 1.1 Hz, 1H), 8.00 (dd, J=8.0, 1.5 Hz, 1H), 7.78-7.51 (m, 3H), 7.44 (ddd, J=8.3, 7.0, 1.5 Hz, 1H), 7.39 (s, 1H), 6.49 (d, J=3.2 Hz, 1H), 6.36 (dd, J=3.3, 1.9 Hz, 1H), 5.56 (s, 2H). 13C NMR (101 MHz, CDCl3) δ 154.03, 151.07, 148.57, 148.19, 142.62, 137.34, 135.51, 133.01, 132.82, 131.33, 130.92, 129.00, 124.79, 124.69, 124.26, 114.38, 110.74, 109.85, 39.18. HRMS [C19H13N304+H]+: calcd 348.0985/found 348.0984.


3-(3-Nitrophenyl)-1-(thiophen-2-ylmethyl)quinoxalin-2(1H)-one (3j). Yield=48 mg (35%). 1H NMR (400 MHz, CDCl3) δ 9.36-9.28 (m, 1H), 8.83 (ddd, J=7.8, 1.7, 1.1 Hz, 1H), 8.34 (ddd, J=8.2, 2.4, 1.1 Hz, 1H), 8.06-7.95 (m, 1H), 7.72-7.55 (m, 3H), 7.42 (ddd, J=8.3, 7.0, 1.4 Hz, 1H), 7.25-7.23 (m, 1H), 7.20 (dq, J=3.5, 0.9 Hz, 1H), 6.97 (dd, J=5.1, 3.5 Hz, 1H), 5.70 (s, 2H). 13C NMR (101 MHz, CDCl3) δ 154.05, 151.18, 148.25, 137.33, 136.88, 135.53, 133.15, 132.49, 131.35, 131.18, 129.05, 127.58, 126.86, 126.02, 124.85, 124.70, 124.32, 113.96, 41.24. HRMS [C19H13N303S+H]+: calcd 364.0756/found 364.0749.


N-(4-nitro-2-(5-oxo-2,3-dihydro-5H-[1,4]oxazino[4,3,2-de]quinoxalin-6-yl)phenyl) acetamide (16). 2-Amino-3-nitrophenol (1 g, 6.5 mmol) was dissolved in DMF (15 mL). 1,2-Dibromoethane (0.7 mL, 8.1 mmol) and KOH (0.3 g, 5.3 mmol) were added, and the mixture was refluxed at 160° C. for 3 d. After cooling, the solution was poured into water and extracted with ethyl acetate. The ethyl acetate solution was washed with water and brine, then dried with magnesium sulfate. After filtration and concentration in vacuo, the product was purified by column chromatography with a 30:70 mixture of ethyl acetate/hexane to yield intermediate 14 as a red crystalline product. This red product was dissolved in methanol (20 mL) and Pd/C (0.1 g) was added. H2 was bubbled for 2 h until the solution turned nearly colorless. The solution was filtered through CELITE®, and solvent was removed in vacuo to yield 3,4-dihydro-2H-benzo[b][1,4]oxazin-5-amine (intermediate 15) as a light brown oil (0.102 g, 10%), which was used directly in the next step. This 3,4-dihydro-2H-benzo[b][1,4]oxazin-5-amine (15: 0.102 g, 0.68 mmol) was dissolved in a mixture of 20 mL of acetic acid and 20 mL of toluene. N-Acyl-5-nitroisatin (0.22 g, 0.94 mmol) was added and the mixture refluxed at 90° C. overnight. Upon cooling, solvent was removed in vacuo, and the residue was washed with ethanol to yield 16 as a dark tan oil. Yield=0.246 g (99%). 1H NMR (400 MHz, DMSO-d6) δ 10.19 (s, 1H), 8.55 (s, 1H), 8.34 (s, 2H), 7.52 (d, J=8.0 Hz, 1H), 7.32 (t, J=8.0 Hz, 1H), 7.24 (d, J=8.0 Hz, 1H), 4.46 (t, J=4.9 Hz, 2H), 4.19 (t, J=4.8 Hz, 2H), 2.04 (s, 3H). 13C NMR (101 MHz, DMSO-d6) δ 169.41, 154.38, 152.13, 143.50, 143.22, 142.31, 132.85, 127.02, 126.93, 125.65, 123.98, 122.47, 122.07, 121.23, 117.02, 63.92, 24.63. HRMS [C22H16N404+H]+: calcd 401.1250/found 401.1237.


6-(2-Amino-5-nitrophenyl)-3-phenyl-2,3-dihydro-5H-[1,4]oxazino[4,3,2-de]quinoxalin-5-one (20). 2-Amino-3-nitrophenol 0.83 g (5.4 mmol) was mixed with K2CO3 (1.13 g, 8.2 mmol) in acetonitrile (100 mL). 2-Bromoacetophenone (1.3 g, 6.5 mmol) was added portion-wise and stirred overnight. Ethyl acetate (100 mL) was added and the solution was filtered, washed with water, 1 N HCl, and brine. The solution was dried over magnesium sulfate, filtered, and solvent removed in vacuo. The resulting crude product (18) was partly dissolved in hot methanol (100 mL). After cooling, Pd/C (0.2 g) was added, and H2 was bubbled until the starting material was consumed as monitored by TLC. The solution was filtered through CELITE®, and the solvent was removed in vacuo. The resulting diamine was purified by column chromatography with a 30:70 mixture of ethyl acetate/hexane. An orange-brown oil of intermediate 19 was obtained. Yield=0.6 g (50%). This 3-phenyl-3,4-dihydro-2H-benzo[b][1,4]oxazin-5-amine (19: 0.2 g, 0.9 mmol) was dissolved in a mixture of acetic acid (20 mL) and toluene (40 mL). 5-Nitroisatin (0.17 g, 0.88 mmol) was added, and the mixture refluxed at 100° C. for 2 h. Upon cooling, solvent was removed in vacuo, and the product was purified by column chromatography with a 30:70 mixture of ethyl acetate/hexane to yield 20. Yield=16 mg (5%). 1H NMR (600 MHz, DMSO-d6) δ 9.21 (d, J=2.8 Hz, 1H), 8.08-7.87 (m, 3H), 7.64 (dd, J=8.1, 1.2 Hz, 1H), 7.39-7.21 (m, 4H), 7.21-7.09 (m, 3H), 6.90 (d, J=9.2 Hz, 1H), 5.98 (t, J=1.6 Hz, 1H), 4.74 (dd, J=11.8, 1.3 Hz, 1H), 4.45 (dd, J=11.7, 2.8 Hz, 1H). 13C NMR (151 MHz, DMSO-d6) δ 155.09, 153.39, 151.79, 142.99, 138.01, 135.39, 131.91, 129.46, 129.04, 128.08, 126.93, 126.72, 124.09, 122.12, 120.45, 116.57, 116.25, 115.20, 109.99, 69.48, 53.31. HRMS [C18H14N405+H]+: calcd 367.1043/found 367.1038.


5-Benzyl-9-fluoro-2-(trifluoromethyl)-5a,10a-dihydro-5H-indolo[2,3-13]quinoxaline (22). Yield=98 mg (15%). 1H NMR (600 MHz, CDCl3) δ 8.57 (s, 1H), 7.96 (dd, J=7.6, 2.6 Hz, 1H), 7.83 (d, J=8.9 Hz, 1H), 7.72 (d, J=8.9 Hz, 1H), 7.63 (dd, J=8.6, 4.2 Hz, 1H), 7.41 (td, J=9.0, 2.7 Hz, 1H), 7.35-7.26 (m, 5H), 6.06 (s, 2H). 13C NMR (151 MHz, CDCl3) δ 158.71 (d, JC-F=240 Hz), 154.95, 147.04, 134.09, 133.93, 131.33, 129.19, 128.76 (br), 128.27, 126.80, 126.32 (br), 125.80 (d, JC-F=33 Hz), 123.77, 123.73 (q, JC-F=272 Hz), 120.58 (q, Jc_F=24 Hz), 119.80, 119.75, 115.35, 109.43 (d, JC-F=24 Hz), 49.35. HRMS [C22H13F4N3+H]+: calcd 396.1124/found 396.1105.


5-Benzyl-9-nitro-2-(trifluoromethyl)-5a,10a-dihydro-5H-indolo[2,3-b]quinoxaline (23). Yield=17 mg (22%). 1H NMR (800 MHz, DMSO-d6) δ 9.01 (d, J=2.4 Hz, 1H), 8.71 (d, J=2.0 Hz, 1H), 8.59 (dd, J=8.7, 2.4 Hz, 1H), 8.22 (d, J=8.9 Hz, 1H), 8.17 (dd, J=9.0, 2.2 Hz, 1H), 7.82 (d, J=8.7 Hz, 1H), 7.45-7.37 (m, 2H), 7.35-7.31 (m, 2H), 7.31-7.23 (m, 1H), 6.25 (s, 2H). 13C NMR (201 MHz, DMSO-d6) δ 163.95, 154.04, 150.17, 141.98, 135.07, 134.96, 132.05, 129.30, 128.91, 128.50 (br), 128.33, 127.48, 127.44 (br), 125.48 (q, JC-F=26 Hz), 124.29 (q, JC-F=204 Hz), 123.34, 119.35, 118.91, 118.21, 49.67. HRMS [C22H13F3N402+H]+: calcd 423.1069/found 423.1062.


REFERENCES (EXAMPLE 6)

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H.; Zhu, J. S.; Ku, C. K.; Tabib, N. A.; Teuthorn, A. P.; Ferrera, L.; Zachos, N. C.; Lin, R.; Galietta, L. J.; Donowitz, M.; Kurth, M. J.; Verkman, A. S. Phenylquinoxalinone CFTR activator as potential prosecretory therapy for constipation. Trans/. Res. 2016, in press; [5] Flores, A. M.; Casey, S. D.; Felix, C. M.; Phuan, P. W.; Verkman, A. S; Levin, M. H. Small-molecule CFTR activators increase tear secretion and prevent experimental dry eye disease. FASEB J. 2016, 30, 1789-1797; [6] Solomon, G. M.; Raju, S. V.; Dransfield, M. T.; Rowe, S. M. Therapeutic Approaches to Acquired Cystic Fibrosis Transmembrane Conductance Regulator Dysfunction in Chronic Bronchitis. Ann. Am. Thorac. Soc. 2016, Apr. 13 Suppl 2: S169-76; [7] Cil. O.; Phuan, P. W.; Gillespie, A. M.; Lee, S.; Tradtrantip, L.; Yin, J.; Tse, M.; Zachos, N. C.; Lin, R.; Donowitz, M.; Verkman, A. S. Benzopyrimido-pyrrolo-oxazine-dione CFTR inhibitor (R)-BPO-27 for antisecretory therapy of diarrheas caused by bacterial enterotoxins. FASEB J. 2016, in press; [8] Snyder, D. S.; Tradtrantip, L.; Yao, C.; Kurth, M. J.; Verkman, A. S. Potent, metabolically stable benzopyrimido-pyrrolo-oxazine-dione (BPO) CFTR inhibitors for polycystic kidney disease. J. Med. Chem. 2011, 54, 5468-5477; [9] Solomon, G. M.; Marshall, S. G.; Ramsey, B. W.; Rowe, S. M. Breakthrough therapies: Cystic fibrosis (CF) potentiators and correctors. Pediatr. Pulmonol. 2015, 50, Suppl 40, S3-S13; [10] Raghunadh, A.; Meruva, S. B.; Kumar, N. A.; Kumar, G. S.; Rao, L. V.; Kumar, U. K. S. An efficient and practical synthesis of aryl and hetaryl a-keto esters. Synthesis 2012, 44, 283-289; [11] Lawrence, D. S.; Copper, J. E.; Smith, C. D. Structure-Activity Studies of Substituted Quinoxalinones as Multiple-Drug-Resistance Antagonists. J. Med. Chem. 2001, 44, 594-601; [12] Kim, S. H.; Kim, K. H.; Kima, J. N. Construction of 1,2,5-Tricarbonyl Compounds using Methyl Cyanoacetate as a Glyoxylate Anion Synthon Combined with Copper(I) Iodide-Catalyzed Aerobic Oxidation. Adv. Synth. Catal. 2011, 353, 3335-3339; [13] Jean-Claude; B. J.; Just, G. Synthesis of bi- and tri-cyclic tetrazepinones J. Chem. Soc., Perkin Trans. 1, 1991, 2525-2529; [14] Fox, B. M.; Sugimoto, K.; lio, K.; Yoshida, A.; Zhang, J.; Li, K.; Hao, X.; Labelle, M.; Smith, M.-L.; Rubenstein, S. M.; Ye, G.; McMinn, D.; Jackson, S.; Choi, R.; Shan, B.; Ma, J.; Miao, S.; Matsui, T.; Ogawa, N.; Suzuki, M.; Kobayashi, A.; Ozeki, H.; Okuma, C.; Ishii, Y.; Tomimoto, D.; Furakawa, N; Tanaka, M.; Matsushita, M.; Takahashi, M.; Inaba, T.; Sagawa, S.; Kayser, F. Discovery of 6-Phenylpyrimido[4,5-b][1,4]oxazines as Potent and Selective Acyl CoA:Diacylglycerol Acyltransferase 1 (DGAT1) Inhibitors with in Vivo Efficacy in Rodents J. Med. Chem. 2014, 57, 3464-3483; [15] Coffman, K. C.; Nguyen, H. N.; Phuan, P.-W.; Hudson, B. M.; Yu, G. J.; Bagdasarian, A. L.; Montgomery, D.; Lodewyk, M. W.; Yang, B.; Yoo, C. L.; Verkman, A. S.; Tantillo, D. J.; Kurth, M. J. Constrained bithiazoles: small molecule correctors of defective ΔF508-CFTR protein trafficking J. Med. Chem. 2014, 57, 6729-6738; [16] Ma, T.; Vetrivel, L.; Yang, H.; Pedemonte, N.; Zegarra-Moran, O.; Galietta, L. J.; Verkman, A. S. High-affinity activators of CFTR chloride conductance identified by high-throughput screening. J. Biol. Chem. 2002, 277, 37235-37241; [17] Namkung, W.; Phuan, P. W; Verkman, A. S. TMEMI6A inhibitors reveal TMEMI6A as a minor component of calcium-activated chloride channel conductance in airway and intestinal epithelial cells. J Biol Chem. 2011, 286, 2365-2374; [18] De La Fuente, R.; Namkung, W.; Mills, A.; Verkman, A. S. Small-molecule screen identifies inhibitors of a human intestinal calcium-activated chloride channel. MoL PharmacoL 2008, 73, 758-768; [19] Galietta, L. J.; Springsteel, M. F.; Eda, M.; Niedzinski, E. 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Claims
  • 1. A compound of Formula I:
  • 2. The compound of claim 1, wherein the compound is Formula IA:
  • 3. The compound of claim 2, wherein L1 is —CH2—.
  • 4. The compound of claim 2, wherein R6, R7, R8 and R9 are hydrogen.
  • 5. The compound of claim 2, wherein R10, R11, R12, R13 and R14 are hydrogen.
  • 6. The compound of claim 2, wherein at least two of R1, R2, R3, R4, R5 are hydrogen.
  • 7. The compound of claim 6, wherein: R1 is hydrogen, —CN, —NR1BR1C, —NR1BR1C, NR1BC(O)R1D, —C(O)OR1D or substituted or unsubstituted alkyl;R2 is hydrogen, —CN, —NO2, —NR2BR2C, NR2BC(O)R2D;R3 is hydrogen, —CN, —NO2, —NR3BR3C, NR3BC(O)R3D′, —C(O)OR3D or substituted or unsubstituted alkyl;R4 is hydrogen, —CN, —NO2, —NR4BR4C, NR4BC(O)R4D′, —C(O)OR4D or substituted or unsubstituted alkyl;R5 is hydrogen, —CN, —NO2, —NR5BR5C, NR5BC(O)R5D′, —C(O)OR5D or substituted or unsubstituted alkyl.
  • 8. The compound of claim 7, wherein R1B, R2B, R3B, R4B, R5B, R1C, R2C, R3C, R4C, R5C, R1D, R2D, R3D, R4D and R5D are independently hydrogen or methyl.
  • 9. The compound of claim 7, wherein: at least two of R1, R2, R4 and R5 are hydrogen;R3 is —NO2.
  • 10. The compound of claim 2, wherein R2 and R3 are joined to form, together with the atoms to which they are attached, 5-6 membered substituted or unsubstituted heterocycloalkyl or substituted or unsubstituted heteroaryl.
  • 11. The compound of claim 10, wherein the compound is:
  • 12. The compound of claim 1, wherein -L1-R20 is unsubstituted C2-C4 alkyl.
  • 13. The compound of claim 12, wherein L1 is —CH2—, and R20 is methyl, ethyl, or ethenyl.
  • 14. The compound of claim 12, wherein R6, R7, R8 and R9 are hydrogen.
  • 15. The compound of claim 12, wherein R10, R11, R12, R13 and R14 are hydrogen.
  • 16. The compound of claim 15, wherein: at least two of R1, R2, R4 and R5 are hydrogen; andR3 is —NO2.
  • 17. The compound of claim 1, wherein: L1 is substituted or unsubstituted C1-C3 alkylene; andR20 is substituted or unsubstituted heteroaryl.
  • 18. The compound of claim 17, wherein: L1 is —CH2—; andR20 is substituted or unsubstituted pyridyl, furanyl, or thiophenyl.
  • 19. The compound of claim 17, wherein R6, R7, R8 and R9 are hydrogen.
  • 20. The compound of claim 17, wherein: at least two of R1, R2, R4 and R5 are hydrogen; and R3 is —NO2.
  • 21. A pharmaceutical composition comprising a pharmaceutically acceptable excipient, and a compound of claim 1.
CROSS-REFERENCES TO RELATED APPLICATIONS

This application is a continuation of U.S. application Ser. No. 16/016,281, filed Jun. 22, 2018, which is the national application of International Application No. PCT/US2016/068566, filed Dec. 23, 2016, which claims priority to U.S. Provisional Application No. 62/376,808, filed Aug. 18, 2016, and U.S. Provisional Application No. 62/387,579, filed Dec. 24, 2015, the contents of each of which is incorporated herein in its entirety and for all purposes.

STATEMENT AS TO RIGHTS TO INVENTIONS MADE UNDER FEDERALLY SPONSORED RESEARCH AND DEVELOPMENT

This invention was made with the government support under Grant Nos. TR000004, EY023981, EY013574, EB000415, DK035124, DK072517 and DK101373, awarded by the National Institutes of Health. The government has certain rights in the invention.

Provisional Applications (2)
Number Date Country
62376808 Aug 2016 US
62387579 Dec 2015 US
Continuations (1)
Number Date Country
Parent 16016281 Jun 2018 US
Child 17226004 US