Charting human islet maturation via combined soft nanoelectronics and single-cell spatial transcriptomics

Information

  • Research Project
  • 10326565
  • ApplicationId
    10326565
  • Core Project Number
    DP1DK130673
  • Full Project Number
    1DP1DK130673-01
  • Serial Number
    130673
  • FOA Number
    RFA-DK-20-024
  • Sub Project Id
  • Project Start Date
    9/17/2021 - 2 years ago
  • Project End Date
    5/31/2026 - 2 years from now
  • Program Officer Name
    SATO, SHERYL M
  • Budget Start Date
    9/17/2021 - 2 years ago
  • Budget End Date
    5/31/2022 - a year ago
  • Fiscal Year
    2021
  • Support Year
    01
  • Suffix
  • Award Notice Date
    9/17/2021 - 2 years ago
Organizations

Charting human islet maturation via combined soft nanoelectronics and single-cell spatial transcriptomics

Pancreatic islets rely on spatiotemporally orchestrated interactions between heterogenous cells to maintain blood glucose homeostasis. In type 1 diabetes, an islet-directed autoimmune attack leads to loss of functional ? cells, which is accompanied by defects in the other islet cell types. Diabetics suffer complications from chronic glucose misregulation, which ultimately reduce life expectancy. Administering insulin itself can treat type 1 diabetes. However, daily insulin injection is expensive, onerous, and carries side effects including risk of ketoacidosis and coma. Human stem cell-derived islet organoids (SC-islets) offer a chance to generate a limitless human islet supply as potential therapeutics through transplantation. However, SC-islets lack the precision, kinetics, and magnitude of insulin/glucagon secretion that natural islets show during adult life. Whether these limitations reflect poor spatiotemporal coordination between (or within) populations of SC-islet cell types, or intrinsic three-dimensional (3D) heterogeneity in development and maturation, is still unknown. Here, we propose to address these fundamental questions by experimentally capturing the trajectories of cellular activity and interaction across the 3D volume of developing SC-islets through the integration of novel technologies from stem cell biology, soft thin-film nanoelectronics, tissue clearing and single-cell spatial transcriptomics, and computational and system biology. Specifically, we have (1) exploited scalable cell differentiation and purification methods to build ?designer? SC-islets with custom ? and ? composition; (2) globally embedded soft stretchable sensor arrays within SC-islets, building ?cyborg islets? for chronically-stable tracing of islet-wide ?- and ?-cell type specific electrical activities at single-cell resolution in vitro and in vivo; (3) implemented 3D tissue clearing, staining, imaging, and in situ single-cell RNA sequencing to spatially map hormones, biomarkers, gene expression, and cell types in the intact SC-islets at subcellular resolution; and (4) used fluorescently-labeled electronic barcodes to identify sensor positions within cleared SC-islets and computationally integrate chronic electrical recording with hormones, biomarker and gene expression data at the single-cell level. We propose to integrate and use these inventions to address major challenges in SC-islet maturation. Specifically, we aim to employ such multimodal characterization of SC-islet development to address (1) the role of Dec1 in islet maturation mediated by circadian entrainment; (2) the 3D heterogeneity in SC-islet maturation; and (3) the role of nerve innervation and vascularization in the maturation of transplanted SC-islets. The success of this proposal will result in a platform that can monitor the in situ single-cell activity of SC-islets in a chronically stable manner, provide an understanding of the 3D heterogeneity during SC-islet development and maturation. We envision that it will ultimately enable us to build functionally specialized and mature SC-islets for human therapeutics.

IC Name
NATIONAL INSTITUTE OF DIABETES AND DIGESTIVE AND KIDNEY DISEASES
  • Activity
    DP1
  • Administering IC
    DK
  • Application Type
    1
  • Direct Cost Amount
    500000
  • Indirect Cost Amount
    345000
  • Total Cost
    845000
  • Sub Project Total Cost
  • ARRA Funded
    False
  • CFDA Code
    847
  • Ed Inst. Type
    UNIVERSITY-WIDE
  • Funding ICs
    NIDDK:845000\
  • Funding Mechanism
    Non-SBIR/STTR RPGs
  • Study Section
    ZDK1
  • Study Section Name
    Special Emphasis Panel
  • Organization Name
    HARVARD UNIVERSITY
  • Organization Department
    NONE
  • Organization DUNS
    082359691
  • Organization City
    CAMBRIDGE
  • Organization State
    MA
  • Organization Country
    UNITED STATES
  • Organization Zip Code
    021385319
  • Organization District
    UNITED STATES