Cloned streptococcal genes encoding protein G and their use to construct recombinant microorganisms to produce protein G

Abstract

Protein G variants are disclosed. These protein G variants have the immunoglobulin binding properties of protein G. Also disclosed is the preparation of the protein G variants by expression from hosts transformed with a gene encoding the protein G variants.

Description

FIELD OF THE INVENTION

This present invention relates to the cloning of genes which specify the biosynthesis of Streptococcus Protein G, cloned genes which encode protein G variants having the immunoglobulin binding properties of protein G, and the use of organisms transformed with the cloned genes to produce Protein G and Protein G-like variant polypeptides.

BACKGROUND OF THE INVENTION

There has been a growing interest in recent years in bacterial F.sub.c receptors, molecules that bind to antibodies through a nonimmune mechanism. This binding is not to the antigen recognition site, which is located in the F.sub.ab portion of the antibody molecule, but to the F.sub.c portion of the antibody. The F.sub.c region is common to many types of antibodies, thus bacterial F.sub.c receptors can bind to many types of antibodies. This property makes bacterial F.sub.c receptors useful in a number of immunochemical applications.

Bacterial F.sub.c receptors have a number of useful or potentially useful applications, primarily in the detection of antibodies, the purification of antibodies and the treatment of diseases. The detection of antibodies is required in several phases of laboratory research in immunology, including the screening of hybridoma clones for the secretion of specific monoclonal antibodies, the measurement of the immune response of an immunized animal, and the quantitation of antigens by competitive binding assays. Methods for detecting antibodies using bacterial F.sub.c receptors have been found to be more sensitive and less prone to interference and high background signals than other detection methods [Boyle, M. D. P., Biotechniques 2:334-340 (1984)].

F.sub.c receptors also are useful in purifying antibodies to be sued in the purification of protein drugs and as therapeutics. Although a number of methods are known, a popular method involves the sue of affinity chromatography on columns of immobilized bacterial F.sub.c receptors. This methods is preferred because the columns can be reused many times, thus lowering the expense of purification.

A number of potential clinical uses of bacterial F.sub.c receptors are currently under investigation. They include passing plasma over extracorporeal columns of immobilized F.sub.c receptors, then reinfusing the treated plasma. See, for example, Tenan, D. S., et al., N. Eng. J. Med. 305:1195-1200 (1981).

The best known bacterial F.sub.c receptor is Protein A of Staphylococcus aureus, which binds to the constant F.sub.c domain of immunoglobulin IgG. Other bacterial F.sub.c receptors also have been identified. One of these is known as Protein G of Group G streptococci. Although Protein G is analogous to Protein A, Protein G has several important advantages. For example, Protein G binds to all subclasses of human IgG, whereas Protein A does not bind to the IgG3 subclass [Reid, K. J. et al. J. Immunol. 132:3098-3102 (1984)]. Protein G also is specific for IgG and does not cross-react with human antibodies of type IgA and IgM as Protein A does. [Myhre, E. B. and Kronvall, G. "Immunoglobulin Specificities of Defined Types of Streptococcal Ig Receptors " In: Basic Concepts of Streptococci and Streptococcal Diseases; J. E. Holm and P. Christensen, eds.; Redbook, Ltd., Chertsey, Surrey; pp. 209-210 (1983)]. In addition, Protein G binds to certain animal IgGs to which Protein A binds weakly or not at all. These include bovine, ovine, and caprine IgGl and several subclasses of equine IgG (Reis, K. J. et al., supra). Protein G also has been found superior to Protein A in binding to several subclasses of murine monoclonal antibodies [Bjorck, L. and Kronvall, G. J. Immunol. 133:969-974 (1984)]. For these reasons, Protein G is likely to become the bacterial F.sub.c receptor of choice in a variety of applications.

Currently, Protein G is obtained by investigators for study by purification from Streptococcal strains which naturally produce it. For example, Streptococcal cells have been treated with proteolytic enzymes (e.g., papain or trypsin) to solubilize the Protein G (which is a cell wall protein), followed by known protein purification procedures (e.g., ion exchanges chromatography, gel filtration, and affinity chromatography) to further purify the Protein G (European Patent Application, Publication Number 0 131 142).

Given the advantages, uses an potential uses of Protein G, it would be desirable to be able to produce the protein using recombinant DNA methodology. Accordingly, it is an object of the present invention to clone the gene encoding Protein G and to produce Protein G by transforming a microbial host with the cloned gene and cultivating the host under Protein G-producing conditions.

SUMMARY OF THE INVENTION

The present invention provides a cloned gene encoding an F.sub.c receptor protein having the IgG binding properties of Protein G. The gene is derived from Streptococcus Sp., Lancefield Group G, strain and inserted into a cloning vector. Cells of a prokaryotic organism which have been stably transformed with recombinant vectors are disclosed. One transformed stain comprises a first vector carrying the gene encoding a protein having the properties of Protein G and a second vector which does not contain the gene and acts as a cryptic helper plasmid to stably maintain the first vector in the host strain. Other transformants carry vectors in which the DNA insert comprising the gene encoding the Protein G protein has been modified such that a helper plasmid is no longer needed. The transformed strains are cultivated under Protein G-producing conditions.

The invention further provides the identification of the nucleotide sequence and amino acid sequence for the active binding site of the molecule. One gene cloned by the inventor contains two active sties. A second cloned gene contains three active sites.

The invention further provides for the production, using recombinant vectors, of Protein G variants, which have the immunoglobulin binding properties of Protein G, the Protein G variant polypeptides containing one or more amino acid sequences which correspond to the Ig binding sites of Protein G and which exhibit the IgG-binding characteristics of Protein G.

BRIEF DESCRIPTION OF THE FIGURES

FIG. 1 is a diagram showing the salient features of plasmid pGX1066, a vector suitable for use in cloning a Protein G-encoding DNA fragment.

FIG. 2 shows a partial restriction map of plasmid pGX4533, a recombinant plasmid vector containing a Protein G-encoding DNA fragment.

FIGS. 3 and 3A-C show a DNA sequence for the Protein G gene, as well as the amino acid sequence encoded by the gene.

FIG. 4 shows the restriction map of the cloned protein G gene and the repeating structure of its protein product responsible for IgG-binding.

FIG. 5 shows the partial restriction map of mGX4547, a bacteriophage vector containing a Protein G-encoding fragment.

FIG. 6 shows the partial restriction map of mGX7880, a bacteriophage vector which contains two complete copies of the B structure and lacks all amino acid sequences distal to B1 and B2.

FIG. 7 shows a restriction map of plasmid pGX4582a recombinant plasmid vector used to transform B. subtilis which contains a Protein G-encoding fragment.

FIGS. 8 and 8A-C show the location of the active sites, B1 and B2, on Protein G as coded for by the cloned Protein G gene derived from streptococcus GX7809.

FIGS. 9 and 9A show the DNA and amino acid sequences for the cloned Protein G gene derived from streptococcus GX7805. This gene codes for a Protein G containing three active sites.

FIGS. 10(a) and 10(b) show the relationship between the repeating structures of the protein G gene derived from stains GX7805 and GX7809.

FIG. 11 depicts construction of plasmid pGX4595 from plasmid pGC4582 wherein coding sequences upstream from the active sites sequences have been deleted.

FIG. 12 depicts construction of plasmids pGX4597 and pGX4599 from plasmid mGX7872 where coding sequences downstream from the active sites have been deleted.

FIG. 13 depicts the construction of plasmids pGX5203 (which expresses Protein G variant type 2) and pGX5204 (which expresses Protein G variant type 3) from plasmids pGX4597 and pGX4599 respectively and the plasmid pGX2606 which contains the promoter OLPR.

FIG. 14 depicts the construction of plasmid pGX4592 which contains the gene which encodes Protein G variant No. 1.

FIG. 15 depicts the construction of plasmid pGX5245 which contains the gene which encodes Protein G variant No. 5.

FIG. 15 depicts the construction of plasmid pGX5247 and pGX5246 which contain genes which encode Protein G variants 6 and 11, respectively.

FIG. 17 depicts the construction of plasmid pGX5244 which contains the gene which encodes Protein G variant No. 7.

FIG. 18 depicts the construction of plasmids pGX5255 and pGX 5268 which contain genes which encode Protein G variants 8 and 9, respectively.

FIG. 19 depicts the construction of plasmid pGX5266 which contains the gene which encodes Protein G variant type 10.

DETAILED DESCRIPTION OF THE PREFERRED EMBODIMENTS

The present invention relates to cloned Protein G genes. A DNA fragment comprising a Protein G gene is isolated from a Streptococcus Sp., Lancefield Group G, stain and inserted into a cloning vector. Another aspect of the invention relates to production of Protein G by transforming host cells with a recombinant vector comprising a cloned Protein G gene and culturing the transformed cells under protein-producing conditions, whereupon Protein G is produced by the cells.

Yet another aspect of the invention is directed to production of a Protein G variant, said variant containing from one to twenty Protein G binding sites per molecule. This Protein G variant has the formula:

-(-B-b-).sub.n - wherein B is B.sub.1, B2 as shown in FIG. 9 or a hybrid sequence comprising B1 and B2 which is designated B3, b is as shown in FIG. 8, and n is from 1 to 20. Such protein G variants having the above formula do not contain the lethal sequences which naturally flank the protein G gene and which limit the quantity of protein G which may be expressed by a recombinant host.

By the term "hybrid sequence" is intended DNA or amino acid sequences which contain portions of the respective sequences corresponding to B1 and B2 and which retain the immunoglobulin binding properties of Protein G. Such a hybrid sequence is shown in FIG. 9 and is labeled B3. This hybrid sequence comprises the portion of B1 corresponding to the amino acid sequence 398-314 of B2 fused to he sequence 245-282 of B1. Thus, it is intended that all such hybrid sequences which retain the immunoglobulin binding properties of Protein G are within the scope of this invention.

Cloning of the Protein G and production of Protein G in bacterial hosts, such as E. coli or Bacillus subtilis, through recombinant DNA technology, according to the methods of the present invention, provides a number of advantage over current methods for obtaining the protein. By the method of this invention, relatively high production levels of microbial Protein G and protein G variant polypeptides can be obtained. Morever, the proteins can be produced under conditions where it can be isolated more favorably, and the proteins can be produced in a non-pathogenic host. The cloned gene may be inserted into various multicopy expression vectors to give enhanced levels of these valuable IgG-binding proteins in cultured E. coli cells transformed with the recombinant expression vectors. Production of Protein G in E. coli or B. subtilis cells is preferable to cultivation of Protein G-producing Streptococcal stains, which are commonly pathogenic strains.

In addition, the proteolytic enzymes, such as papain and trypsin, which have been used to release Protein G from the cell wall of Streptococcal cells, may degrade the Protein G product. Thus, known methods of isolating Protein G from Streptococcal cells may produce low molecular weight degraded forms of Protein G.

The first step in cloning of the Protein G gene, according to the present invention, is isolation of Streptococcal strains that produce Protein g. This may be done by assaying various strains of IgG binding activity using any suitable immunoassay technique. A technique used by the Applicant is the colony immunoassay described in detailed in the example section below. Strains found to have IgG-binding activity are next tested for the ability to bind IgG3 as well as unfractionated IgG, since the ability to bind IgG3 is a desired property associated with Protein G. A hemagglutination assay using red blood cells coated wither with IgG3 or with unfractionated IgG (describe din detail in the examples below) is a convenient method for identifying Protein G-producing strains. A known Protein A-producing strain, such as Staphylococcus aureus Cowan I [Sjoquist, J., Eur. J. Biochem., 78: 471-490 (1977)], may be used as a control, since Protein A binds unfractionated IgG bu not IgG3.

Chrmosomal DNA is isolated from strains found to produce Protein G by cultivating the strains in a nutrient medium to a desired cell density, then lysing the cells by any of the conventional chemical, mechanical, and/or enzymatic methods known in the art. Conventional extraction and precipitation procedures are sued to isolate the chromosomal DNA. Fragments of DNA of a suitable size for cloning are obtained by such known mechanical methods as sonication or high-speed stirring in a blender, or by enzymatic methods, such as partial digestion with DNAseI, which gives random fragments, or with restriction endonucleases, which cleave at specific sites.

The chromosomal DNA fragment then are inserted into a cloning vector. Any suitable plasmid or bacteriophage cloning vector may be used. For a vector to be suitable, it should have several useful properties. It should have an origin of replication that is functional in the intended microbial host cells, and a selectable marker (such as an antibiotic resistance gene) to aid identifications of host cells that have been transformed with the vector. It should be able to accept inserted DNA fragments and still replicate normally. Preferably, the vector comprises one or more unique restriction endonucleases recognition sites at which DNA fragments can be inserted without destroying the vector's ability to replicate.

Suitable cloning vectors include phage derivatives such as lambda gtll [Young and Davis, Proc. Nat'l Acd. Sci. U.S.A., 80:1194-1198 (1983)], the various phage M13-derived vectors such as M13mp9 (commercially available from Bethesda research Laboratories), plasmids such as pBR322, and many other [Old and Primrose, Principles of Gene Manipulation, 2nd. Ed., Univ. of Calif. Press, pgs. 32-35 and 46-47 (1981)]. The Applicant used a pBR322-derived plasmid vector pGX1066, shown in FIG. 1.

The Streptococcal DNA is inserted into the cloning vector by such methods as homopolymeric tailing or by using linker molecules (Old and Primrose, supra at page 92). Advantageously, the vector is linearized with a restriction endonucleases, and the chromosomal DNA is also digested with a restriction endonucleases that produces DNA fragment that are ligatable to the ends of the linearized vector molecule. The Streptococcus-derived DNA fragments are thus advantageously inserted into the cloning vector in a standard reaction using the enzyme T4 DNA ligase.

Bacterial cells are transformed with the recombinant cloning vector, using standard procedures, and the bacterial colonies are screened for production of Protein G. Assays such as the colony immunoassay and the hemagglutination assay described in the examples below are suitable for identification of recombinant strains producing Protein G. As described more fully in Example I below, the initial positive colony identified was unstable. Through purification procedures in which this clone underwent several rounds of restreaking, a derivative of the clone was obtained which appeared stable and produced Protein G. This stain was designate E. coli GX7820.

Plasmid DNA from this strain was isolated and then analyzed by restriction analysis followed by gel electrophoresis. It has been determined that the strain contains two plasmids. One, designated pGX1066X, appears to be approximated the same size as the pGX1066 cloning vector; the other, designated pGX4530, appears to be pGX1066 containing an 11 kilobase-pair (kbp) insert. Although the Applicant does not with to be bound by a particular theory, it appears, as illustrated more fully in the examples, that pGX1066X is a "cryptic helper plasmid", a derivative of pGX1066 in which the ampicillin resistance gene is no longer intact. The original transformant strain probably contained pGX1066 and pGX4530, and was unstable because pGX4530 was lost from the cells due to lack of selective pressure to retain that plasmid when pGX1066 was present to provide ampicillin resistance. Once pGX1066X appeared, having a mutation that inactivated its ampicillin resistance gene, only those host cells which had retained pGX4530 (having an intact ampicillin resistance gene) could survive on the ampicillin plates. Plasmid pGX1066 X is retained in the cells containing both plasmids, presumably because it serves to limit the copy number of pGX4530 in the cell. Plasmid pGX4530 alone is lethal to the host cells (see Example I) since it encodes amino acid sequences which are lethal to the host. However, the presence of pGX1066X in the same host cell reduces the copy of number of pGX4530 to a tolerable level. The plasmids are from the same "incompatibility group", i.e., the plasmids compete with each other for maintenance in the cell, so that each plasmid limits the copy number of the other in the host cell E. coli strain GX7820 has been deposited with the American Type Culture Collection in Rockville, Md., and given accession number 53460.

An E. coli strain was transformed with a mixture of the plasmids isolated from strain GX7820. The transformation resulted in a number tiny, strongly positive colonies with a few (about 20%) resembling GX7820. From these tiny positive colonies have been isolated tow stable variants which do not carry the helper plasmid and which are more strongly positive for Protein G than the original GX7820. One strain, designated GX7823, carries a plasmid (pGX4533) from which has been deleted a two kilobase pair (kbp) fragment of the insert in the pGX4530 plasmid. E. coli strain GX7823 has been deposited with the American Type Culture Collection in Rockville, Md. and given accession number 53461. The other, designated GX7822, carries a plasmid which has acquired a three kbp insert of DNA within the original insert at a site very close to one end of the deletion in the plasmid carried by the GX7823 strain. The Protein G gene has been located on a 1.9 kilobase pair (kbp) fragment of the streptococcal DNA inset on pGX4533.

To improve Protein G production levels, the cloned Protein G gene may be inserted into a variety of expression vectors. The expression vectors comprise "regulatory region", which include DNA sequences necessary for gene expression, i.e., the transcription of DNA into mRNA followed by translation of the mRNA into the protein that the gene encodes. The Protein G gene may contain its natural expression signals, or those signals may be removed and the structural portion of the cloned Protein G gene (i.e., the protein-encoding portion of the gene) can be operably fused, in accordance with conventional methods, to other expression signals, contained in an expression vector, which are capable of directing the Protein G gene in the chosen host organism. For example, when the host microorganism is E. coli, the expression vector may comprise such known regulatory regions as the trp promoter/operator, the lac promoter/operator, the bacteriophage lambda P.sub.L promoter/operator, and many others.

In one embodiment of the invention, the expression vector further comprises a DNA sequence homologous to a region of the chromosome of the host microorganism. This construction permits linear integration of the vector into the host chromosome in the region of homology. An advantage to this method is that there is less likelihood of loss of the Protein G sequence from the host, due to negative selection favoring vector-free cells.

Protein G may be produced at high levels in bacterial cells transformed with such recombinant expression vectors. In addition, production of Protein G within the cell may be controlled by using promoter/operator systems which may be induced (to begin gene expression) at a desired cell density, or in which gene expression can be reversibly repressed until the cell density in a culture of recombinant bacterial cells has reached a desired level. The potentially negative effects on cell growth of production of a heterologous protein can thus be avoided.

Transformed cells containing a cloned Protein G gene are cultivated under protein-producing conditions such that Protein G is produced by the cells. Cultivation conditions, including large-scale fermentation procedures, are well known in the art. The cells may be cultivated under any physiologically-compatible conditions of pH and temperature, in any suitable nutrient medium containing assimilable sources of carbon, nitrogen and essential minerals that supports cell growth. Protein-producing cultivation conditions will vary according to the type of vector used to transform the host cells. For example, certain expression vectors comprise regulatory regions which require cell growth at certain temperatures, or addition of certain chemicals to the cell growth medium, to initiate the gene expression which results in production of Protein G. Thus, the term "protein producing conditions" as used herein is not meant to be limited to any one set of cultivation conditions.

Advantageously, the cloned gene is transferred to B. subtilis by methods previously applied to the gene encoding Protein A and described in commonly assigned U.S. Pat. No. 4,617,266 (1986), incorporated herein by reference in it entirety. In accordance with these methods, Protein G can be synthesized in B. subtilis.

The functionally active portions of Protein G was localized to a repeating structure by examining the IgG-binding activity of protein produced by E. coli strains carrying modified forms of the cloned protein G gene. In a preferred embodiment, the invention also relates to a cloned gene which encodes one or more of the functionally active portions of Protein G (Protein G variants) and to the protein so produced which has the immunoglobulin binding properties of Protein G. The details of the identification and isolation of the gene coding for the active binding sites of Protein G are set forth in Example III below. The DNA sequences, and the amino acid sequences encoded thereby, of two genes encoding, respectively, two and three active sites per Protein G molecule are set forth in FIGS. 8 and 9. With this information, it is now possible to produce Protein G variants which contain multiple Protein G binding sites. Synthetic genes maybe constructed, utilizing know synthetic procedures, which code for from one to twenty or more active sites within a given amino acid sequence, thereby providing higher binding efficiency and capacity to the resulting material. A preferred Protein G variant containing 1 to 10 active binding sites; a more preferred material contains 1 to 5 active binding sites.

Also within the scope of this invention are Protein G variants having the immunoglobulin-binding properties of Protein G, further having deletions or substitutions of amino acids or additional amino acids at the amino or carboxyl terminus thereof.

Preferred forms of the Protein G variants ar encoded by genes from which coding sequences upstream and downstream from the active sites (B1 and B2) have been deleted. The details regarding the deletion of such coding sequences are set forth in the Examples, below.

In a preferred embodiment, the invention relates to a cloned gene encoding a Protein G variant, having the following DNA sequence: ##STR1## or a degenerate variant thereof;

vectors containing this cloned gene, hosts transformed with these vectors, and the protein expressed therefrom having the following amino acid sequence: ##STR2##

Preferably, the invention also relates to a cloned gene encoding a Protein G variant, having the following DNA sequence: ##STR3## or a degenerate variant thereof;

vectors containing this cloned gene, hosts transformed with these vectors, and the protein expressed therefrom having the following amino acid sequence: ##STR4##

Preferably, the invention also related to a cloned gene encoding a Protein G variant, having the following DNA sequence: ##STR5## or a degenerate variant thereof;

vectors containing this cloned gene, hosts transformed with these vectors, an the protein expressed therefrom having the following amino acid sequence: ##STR6##

Preferably, the invention also relates to a cloned gene encoding a Protein G variant, having the following DNA sequence: ##STR7## or a degenerate variant thereof;

vectors containing this cloned gene, hosts transformed with these vectors, and the protein expressed therefrom having the following amino acid sequence (without the 30 amino acid secretion sequence): ##STR8##

Preferably, the invention also relates to a cloned gene encoding a Protein G variant, having the following DNA sequence: ##STR9## or a degenerate variant thereof;

vectors containing this cloned gene, hosts transformed with these vectors, and the protein expressed therefrom having the following amino acid sequence: ##STR10##

Preferably, the invention also relates to a cloned gene encoding a Protein G variant, having the following DNA sequence: ##STR11## or a degenerate variant thereof;

vectors containing this cloned gene, hosts transformed with these vectors, and the protein expressed therefrom having the following amino acid sequence: ##STR12##

Preferably, the invention also relates to a cloned gene encoding a Protein G variant, having the following DNA sequence: ##STR13## or a degenerate variant thereof;

vectors containing this cloned gene, hosts transformed with these vectors, and the protein expressed therefrom having the following amino acid sequence: ##STR14##

Preferably, the invention also relates to a cloned gene encoding a Protein G variant, having the following DNA sequence: ##STR15## or a degenerate variant thereof;

vectors containing this cloned gene, hosts transformed with these vectors, and the protein expressed therefrom having the following amino acid sequence: ##STR16##

Preferably, the invention also relates to a cloned gene encoding a Protein G variant, having the following DNA sequence: ##STR17## or a degenerate variant thereof;

vectors containing this cloned gene, hosts transformed with these vectors, and the protein expressed therefrom having the following amino acid sequence: ##STR18##

Preferably, the invention also relates to a cloned gene encoding a Protein G variant, having the following DNA sequence: ##STR19## or a degenerate variant thereof;

vectors containing this cloned gene, hosts transformed with these vectors, and the protein expressed therefrom having the following amino acid sequence: ##STR20##

Preferably, the invention also relates to a cloned gene encoding a Protein G variant, having the following DNA sequence: ##STR21## or a degenerate variant thereof;

vectors containing this cloned gene, hosts transformed with these vectors, and the protein expressed therefrom having the following amino acid sequence: ##STR22##

By the terms "degenerate variant" is intended DNA sequences having substitutions of bases but which encode the same protein.

It will be recognized by one skilled in the art that additional deletions and structural modifications of the Protein G variant genes can be constructed by analogous methods. It will further be recognized that various upstream deletions and various downstream deletions can be recombined in vitro in different combinations to produce novel gene structures. Such recombination can be facilitated by the use of unique restriction endonucleases sites for SmaI (upstream from the apr promoter), KpnI (immediately upstream from sequences encoding domain B1) and HindIII (downstream from the coding sequences), by assorting SmaI-KpnI fragments and KpnI-HindIII fragments. Novel combinations constructed in this way retain sequences encoding the B domains, and therefore retain the IgG-binding activity of Protein G. Additionally, it will be recognized that the SmaI-BamHI fragment of these plasmids which carries the apr promoter and signal-encoding sequences can be replaced by analogous fragments carrying other promoters and signal-encoding sequences that are active in promoting synthesis and secretion of foreign proteins in B. subtilis.

Any suitable known method of protein purification may be used to recover and purify the Protein G from the host cells. The cells may be lysed, if necessary, using known chemical, physical, and/or enzymatic means. The Protein G then may be purified from the cell lysate using such standard procedures as adsorption to immobilized immunoglobulin, as described by Sjoquist, .S. Pat. NO. 3,850,798 (1974), ion-exchange or gel chromatography, precipitation (e.g., with ammonium sulfate), dialysis, filtration, or a combination of these methods.

The following Examples are provided to illustrate the invention, and is not to be construed as limiting the scope of the invention

EXAMPLE I

Cloning a Streptococcus Protein G gene into E. coli

Streptococci of Lancefield group G were obtained from hospitals, and 11 independent isolate strains were derived from the clinical isolates. Each strain was assayed for ability to bind IgG using the following colony immunoassay procedure. The strains were streaked on L-Broth-agar plates which had been overlaid with a sheet of nitrocellulose an (top layer) a sheet of cellulose acetate ("immunoassay plates"). The plates were incubated at 37.degree. C. until bacterial colonies were visible on the cellulose acetate sheet.

The nitrocellulose sheets then were removed from the plates, and IgG-binding proteins were detected on the sheets using an immunochemical procedure, as follows. The sheets were first treated with bovine serum albumin (3.90% w/v in "Tris-saline", which comprises 0.01 M Tris-Hcl, pH 8.0, and 0.15 M Nacl) to block nitrocellulose sites to minimize non-specific binding of antibodies to the nitrocellulose in subsequent steps. The sheets then were treated with normal rabbit serum (diluted 1:1000 in Tris-saline containing 3% w/v bovine serum albumin) for 1 hours at 23.degree. C., followed by peroxidase-conjugated goat anti-rabbit IgG (similarly diluted), and, finally, with 4-chloro-1-naphthol (0.6 mg/ml) and hydrogen peroxide (0.06% w/v in Tris-saline containing 0.2 volume methanol), washing the sheets with Tris-saline between incubation steps. Blue spots on the nitrocellulose sheet indicate the presence of IgG-binding protein, and the blue areas correspond to microbial colonies which produced the IgG-binding protein.

Nine of the strains were positive, i.e. were found to bind IgG, although to varying degrees. Several of the strains were next tested for ability to bind IgG3, using the following hemagglutination assay. Sheep red blood cells (RBC) (Cappel Laboratories, Malvern, Penn.) were coated with immunoglobulin essentially as described by Adler and Adler [Meth. Enzymol. 70:455-466 (1980)]. RBC were washed with phosphate-buffered saline (PBS, containing 8.4 g/l NaCl, 1.1 g/l Na.sub.2 HPO.sub.4, and 0.27 g/l NaH.sub.2 PO.sub.4) and treated for 15 min. at 37.degree. C. with a solution of tannic acid at 2.5 mg/ml in PBS. Cells were recovered by centrifugation and resuspended in PBS containing, at 0.2 mg/ml, either (a) total human immunoglobulin G (available from Sigma Chemical Co; St. Louis, Mo.), (b) IgG3 myeloma protein or (c) PBS only. After incubation at 37.degree. C. for 30 min, RBC were recovered by centrifugation and washed with PBS. For the agglutination assay, 50 ul of a 1% suspension of coated RBC were mixed with 50 ul of a test cell extract, diluted serially in PBS, in a conical well of a multiwell dish. Unagglutinated RBC settle to the bottom of the well and form a small pellet, while agglutinated RBC form a more diffuse precipitate on the walls of the well.

Each of the positive group G Streptococcal strains agglutinated IgG3-coated erythrocytes as efficiently as erythrocytes coated with unfractionated IgG, which is expected for Protein G-producing strains. In contrast, Staphylococcus aureus Cowan I cells, a strain which produces Protein A, agglutinated red blood cells coated with unfractionated IgC, but showed no activity toward IgG3-coated cells, as expected. None of the cells agglutinated red blood cells which had been incubated with PBS only, i.e., uncoated red blood cells.

The same hemagglutination assay then was performed don supernatant fractions and cell extracts from cultures of the Streptococcus isolates and the isolates appeared to have differing localization of the IgG-binding activity. In some strains the activity appeared to be predominantly cell-bound, in some it was found predominantly int eh culture supernatant, and some strains were intermediate. Three stains, which had differing localization of the IgG-binding activity, were chosen as sources of DNA for cloning the Protein G gene.

Cells from each strain were cultivated in 250 mls. of Todd-Hewitt broth (commercially available from Fisher Scientific, Richmond, Vir.) containing 20 mM D,L-threonine. After 4 hours of cultivation, glycine was added to a final concentration in the vulture medium of 5% (w/v). The cells were harvested by centrifugation after 5 hours of cultivation, when the cell density had reached an absorbance at 600 nm of about 0.5 to 1.0. The cell pellets were washed with PBS and then frozen in liquid nitrogen and stored at -70.degree. C. After thawing, the cells were washed with, and then resuspended in, 10 mls of S7 medium [described by Vasantha and Freese, J. Bacteriology 144:1119-1125 (1980)] containing 0.5 M sucrose, to which 200 ul of 5 mg/ml mutanolysin (commercially available from Sigma Chemical Co.) has been added. Following incubation at 37.degree. C. for 45 minutes, the resulting protoplasts were pelleted by centrifugation, and then lysed osmotically by resuspension in a solution containing 100 mM EDTA, pH 8.0, 150 mM NaCl, and 0.5 mg/ml Proteinase K. Following incubation at 37.degree. C. for 55 minutes, alpha-toluenesulfonyl fluoride (also called phenylmethanesulfonyl fluoride or PMSF, and available commercially, e.g. from Sigma) was added to a final concentration of 2 mM, and the mixture wad incubated at 70.degree. C. for 15 minutes to inactivate the Proteinase K. The cell lysate was extracted three times with chloroform/isoamyl alcohol (24:1) to further remove proteins, and an equal volume of isopropanol was added to the aqueous phase to precipitate the DNA. The precipitated DNA was collected by winding on a spool, and then was washed with 70% ethanol and dried in vacuo.

The DNA pellets (from each of the 3 strains) were each resuspended in 0.5 ml of a 0.01 M Tris-HCl (pH 7/8)/1 mM EDTA/0.05 M NaCl solution. A portion of this isolated chromosomal DNA was partially digested with the restriction endonucleases MboI (commercially available) by adding 2 units of MboI to 25 ul of the resuspended DNA in 100 ul of a buffer containing 100 mM tris-HCl, pH 7.8, 150 mM NaCl and 10 mM MgCl.sub.2. The reaction mixture was incubated at 37.degree. C. for 13 minutes, then at 70.degree. C. for 10 minutes. The digested DNA was subjected to electrophoresis on a 0.8% agarose gel or 15 hours at 0.35 volts/cm. The section of the gel containing DNA fragments between about 4 and 9 kilobase-pairs (kbp) in length was excised from the gel and crushed to aid in recovery of the DNA. An equal volume of H.sub.2 O-saturated phenol was added to the crushed gel portion, and the mixture was frozen at -70.degree. C. for 1 hour. Without prior thawing, the mixture was centrifuged at room temperature for 15 minutes in an Eppendorf microfuge, and the aqueous phase was extracted twice with an equal volume of phenol and once with an equal volume of phenol/chloroform/isoamyl alcohol (25:24:1). The DNA was precipitated form the aqueous phase by adding 2.5 volumes of 95% ethanol and 30 ug glycogen as a carrier.

The cloning vector into which the chromosomal DNA fragments were inserted was plasmid pGX1066shown in FIG. 1. This plasmid comprises a bank of closely-spaced restriction endonucleases recognition sites useful for insertion of DNA fragments to be cloned. The bank of cloning sites is bordered by two transcription terminators. E. coli strain GX1186, which constitutes strain GX1170 transformed by plasmid pGX1066 has been deposited with the ATCC as No. 39955. 3 ug of plasmid pGX1066 DNA were digested with the restriction endonucleases BamHI (commercially available and used according to manufacturer's specifications.) The digested plasmid DNA then was treated with 1 unit calf intestine alkaline phosphates, (obtained from Boehringer-Mannheim and used according to manufacturer's specifications) for 30 minutes at 37.degree. C. Following extraction of the reaction mixture with phenol/chloroform/isoamyl alcohol (25:24:1), the DNA was precipitated by adding 0.1 volume 2 M sodium acetate, 10 mM EDTA, and 2.5 volumes 95% ethanol and 10 ug glycogen as a carrier. 0.5 ug of the pGX1066 vector DNA (BamHI-digested and phosphates-treated) then was ligated to 0.2 ug of the partially MboI digested Streptococcus chromosomal DNA prepared above. The 10 ul reaction mixture contained 1 unit of T4 DNA ligase (commercially available and used according to manufacturer's instructions) and was incubated at 4.degree. C. for 20 hours.

E. coli SK2267 (F.sup.- gal thi Tl.sup.r hsdR4 end A sbcB15, available from the E. coli Genetic Stock Center, Yale University, New Haven, Conn.) cells were made competent for transformation by standard calcium chloride treatment, and 0.25 ml of the competent cells then were mixed with 20 ul of the ligation mixture in a standard transformation procedure [Lederberg and Cohen, J. Bacteriol. 119:1072-1074 (1974)]. The cells then were pelleted by centrifugation and resuspended in 0.3 ml L Broth. 0.1 ml of cells then were plated on each of three L Broth-agar plates containing 100 ug/ml ampicillin, which had been overlaid with a sheet of nitrocellulose and (top layer) a sheet of cellulose acetate (immunoassay plates). The plates were incubated at 37.degree. C. until bacterial colonies were visible on the cellulose acetate sheet.

The nitrocellulose sheets then were removed from the plates, and IgG-binding proteins were detected on the sheets using the immunochemical procedure described above. The sheets were first treated with bovine serum albumin (3.0% w/v in tris-saline) to block introcellulose sites to minimize non-specific binding of antibodies to the nitrocellulose in subsequent steps. The sheets the were treated with normal rabbit serum, diluted 1:1000 in Tris-saline containing 3.0% w/v bovine serum albumin, for 1 hour at 23.degree. C. followed by peroxidase-conjugated goat anti-rabbit IgG (diluted similarly), and, finally, with 4-chloro-1-naphthol (0.6 mg/ml) and hydrogen peroxide (0.6 % w/v in Tris-saline containing 0.2 vol. methanol), washing with tris-saline between incubation steps.

One positive colony was identified, and was located on a plate containing transformants derived from Streptococcus stain GX7809 (one of the three Streptococcus strains from which DNA was isolated for cloning.) The positive colony was streaked out on an immunoassay plater (containing 100 ug/ml ampicillin, as above) to obtain a purified transformant strain. The nitrocellulose sheet was processed as above, and only a few positives were found among hundreds of negative colonies. It appeared that the original transformant was unstable, so the restreaking process was repeated, and only one positive was found among hundreds of negative colonies. Another round of restreaking produced a plate containing mostly positive colonies. One of the positive colonies, a derivative which was apparently more stable than the original positive transformant, was isolated and designated E. coli strain GX7820. Sample of E. coli GX7820 have been deposited at the American Type Culture Collection in Rockville Md. and given the accession number ATCC No. 53460.

In addition to the original positive colony, several small but strongly positive spots, which could not be correlated with any colony, were observed. These spots yielded no positive progeny on restreaking.

A standard procedure was used to isolate plasmid DNA from E. coli GX7820, and the plasmid DNA was analyzed by restriction analysis followed by gel electrophoresis. The strain was found to contain two types of plasmids. One plasmid (designated pGX1066X) appeared to be the same size as the pGX1066 cloning vector, while the other (designated pGX4530) apparently was pGX1066 containing an 11 kbp insert. Competent E. coli SK2267 cells then were retransformed with the mixture of plasmids isolated from GX7820, and transformants were selected on immunoassay plates containing 100 ug/ml ampicillin. Positive transformants of two types were obtained. A majority formed tiny, strongly positive colonies, most of which could not be propagated. A minority resembled GX7820 in being of more normal size and more easily propagatable. In order to clarify the cause of these results, competent E. coli SK2267 cells were also transformed with gel purified plasmids, as follows:

Transformation A: pGX4530 alone Transformation B: pGX1066X alone Transformation C: mixture of pGX4530 and pGX1066X

The results were as follows:

Transformation A: tiny, strongly positive colonies, most of which could not be propagated. Transformation B: no transformants Transformation C: many tiny, strongly positive non-propagatable colonies (as in trans. A) with about 20% of the positives resembling GX7820i.e. of normal size and propagatable.

Several of the tiny, strongly positive colonies were chosen from the retransformation plates above (i.e., the transformants resulting from transformation of E. coli with an unfractionated plasmid preparation derived from strain GX7820 comprising a mixture of pGX1066X and pGX4530) and were restreaked to isolate propagatable strains. Plasmid DNA was isolated from two strains, and both were found to have lost the pGX1066X helper plasmid. One strain (designated E. coli GX7823) contained a plasmid pGX4533 in which a deletion of about 2 kbp had occurred in the 11 kbp insert found in pGX4530. Samples of E. coli GX7823 have been deposited at the American Type Culture Collection in Rockville Md. and given the accession number ATCC No.. 53461. The second strain (designate E. coli GX7822) contained a plasmid pGX4532 which had acquired an additional 3 kbp of unidentified DNA inserted within the original 11 kbp insert, at a site very close to one end of the deletion in pGX4533.

The strains E. coli GX7823 (containing pGX4533) and E. coli GX7820 (containing pGX4530) were cultivated in L-Broth plus ampicillin. The cells were pelleted by centrifugation, lysed by incubating for 30 min at 37.degree. C. in the presence of 0.5 mg/ml lysozyme in a buffer containing 50 mM EDTA, pH 8.0, and 2 mM PMSF. Samples of the extracts were prepared for electrophoresis by heating for 5 min. at 100.degree. C. in the buffer described by Studier [J. Mol. Biol. 79:237-248 [1973)], and the samples were subjected to electrophoresis on a 12.5% acrylamide-SDS ges as described by Studier, op cit., to separate the proteins. A standard electrophoretic (Western Blotting) technique was used to transfer the protein bands from the gel to nitrocellulose paper. The nitrocellulose was subsequently incubated (in sequence) with BSA, normal rabbit serum, peroxidase-conjugated goat anti-rabbit IgG, and 4-chloro-1-naphthol plus H.sub.2 O.sub.2 (the same nitro-cellulose treatment as the immunochemical procedure described above). Both strains were found to produce the same IgG-binding protein bands with mobilities corresponding to molecular weights between approximately 90,000 to approximately 30,000 with a predominant band at 57,000.

Plasmid pGX4533 was subjected to restriction analysis, and a partial restriction map is shown in FIG. 2. The single line represents the vector (pGX1066) sequences, while the hatched area represents the DNA that has been inserted into the plasmid vector and which contains the Protein G gene.

The 1.9 kbp HindIII fragment in the insert was subcloned into pGX1066, and the resulting recombinant plasmid (pGX4547) was transformed into E. coli. Western blotting of the proteins produced by this transformant (E. coli GX7841) was done as described above, and the same IgG-binding protein bands were present including the predominant 57,000 band. The transformant was also analyzed in a hemagglutination assay, as described above. Extracts of the transformant agglutinated tanned sheep erythrocytes coated with IgG3 (human myeloma protein) and with unfractionated human IgC, but uncoated erythrocytes were not agglutinated. An extract from a Protein A-producing E. coli strain agglutinated the erythrocytes coated with unfractionated IgG, but not those coated with IgG3 or uncoated erythrocytes. A control E. coli strain which produced neither Protein A nor Protein G failed to agglutinate any of the erythrocytes samples.

These results demonstrate that E. coli strains GX7841, GX7820, and GX7823 produce IgG-binding protein having the properties which are characteristics of Protein G.

EXAMPLE II

DNA and Amino Acid Sequence Data

The DNA sequence of the cloned gene was determined. This sequence is shown in FIG. 3, along with the amino acid sequence specified by the DNA sequence. The data in FIG. 3 are for the entire 1.9 kbp HindIII fragment which contains the cloned Protein G gene, as described above.

It will be appreciated that because of the degeneracy of the genetic code, the nucleotide sequence of the gene can vary substantially. For example, portions of all of the gene could be chemically synthesized to yield DNA having a different nucleotide sequence than that shown in FIG. 3, yet the amino acid sequence would be preserved, provided that the proper codon-amino acid assignments were observed. Having established the nucleotide sequence of the Protein G gene and the amino acid sequence of the protein, the gene of the present invention is not limited to a particular nucleotide sequence, but includes all variations thereof as permitted by the genetic code.

The Protein G protein of the present invention is not limited to a protein having the exact amino acid sequence shown in FIG. 3. A protein comprising deletions or substitution in the sequence shown in FIG. 3, or additional amino acids at the amino or carboxyl terminus of the protein, are included int eh present invention as long as the protein retains the desired IgG-binding properties of Protein G, described above. These variations in amino acid sequence may be achieved by chemical synthesis of the gene, or by known in vitro mutagenesis procedures, for example.

The following abbreviations are used in FIG. 3:

______________________________________A = deoxyadenylT = thymidylG = deoxyguanylC = deoxycytosylGLY = glycine CYS = cysteineALA = alanine MET = methionineVAL = valine ASP = aspartic acidLEU = leucine GLU = glutamic acidILE = isoleucine LYS = lysineSER = serine ARG = arginineTHR = threonine HIS = histidinePHE = phenylalanine PRO = prolineTYR = tyrosine GLN = glutamineTRP = tryptophan ASN = asparagine______________________________________

EXAMPLE III

Identification of the Portions of the Protein G Molecule Responsible for the IgG-binding Activity

By examining the IgG binding activity of protein produced by E. coli strains carrying deleted and modified forms of the cloned protein G gene, the activity was localized to the repeating structure between amino acid residues 228 and 353 (FIG. 8). The amino acid sequences of regions B1 and B2 are identical at 49 of the 55 corresponding positions in each. This repeating structure is illustrated in FIG. 4, where it is indicated as B1 and B2.

The 1.9 kbp HindIII fragment indicated in FIG. 2, which contains the entire coding sequence for protein G, originally isolated for Streptococcus GX7809, was subcloned in bacteriophage M13mp9 [Messing. J., Methods Enzymol. 101:20 (1983)]. The plasmid pGX4547 was digested with endonucleases HindIII, as was the double stranded replicative form of bacteriophage M13mp9 DNA. The latter was also treated with calf alkaline phosphates (2 units in 15 ul), which was present during the digestion with HindIII, to prevent recircularization of the vector. After extraction with phenol and precipitation with ethanol, the two digested DNA preparation were mixed and incubated with DNA ligase under ligation conditions. The ligated DNA preparation was used to transfect E. coli strain GX1210 (F' traD36 proA+B+ lacIa/delta-lacZM15 delta-(lac-pro) supE thi zig::Tn10 hsdR2). Transfected cells from plaques were screened for the production of protein G by colony immunoassay. One which produced a positive assay response was designated mGX4547, and was shown to have the partial restriction map illustrated in FIG. 5.

Double stranded replicative form DNA isolated form E. coli infected with mGX4547 was digested with endonucleases PstI. After extraction with phenol nd ehtanol precipitation, the digested DNA was incubated with DAN ligase under ligation conditions in dilute solutions (a proximately 5 ug) digested DNA per ml). The religated DNA preparation was then used to transfect E. coli GX1210. Replicative form DNA was prepared from cells infected from several plaques, and the same infected cells were assayed for the production of IgG-binding protein by colony immunoassay. Several clones were found by analysis of RF DNA with restriction endonucleases PstI to have lost both the 210 bp and the 415 bp PstI fragments indicated in FIGS. 5 and 6. These clones produced no active IgG-binding protein, as indicated by colony immunoassay. The truncated protein produced by these clones would be expected to contain only a portion of the structure B1, and lack all amino acid sequences distal to B1.

One of the clones obtained from the above transfection produced a positive result by colony immunoassay. Restriction analysis of RF DNA from this clone revealed that the phage DNA lacked the 415 bp PstI fragment, but retained the 210 bp fragment. Furthermore, the relative intensity of the 210 bp PstI fragment band on an ethidium bromide-stained agarose gel electrophoretogram suggested that the DNA carried two copies of the 210 bp fragment. Dna sequencing confirmed that the structure of this phage DNA (mGX7880) was as illustrated in FIG. 6. The protein encoded by the protein G gene carried on this phage DNA would be expected to contain two complete copies of the B structure, and intact B1 sequence followed by a chimera of B1 and B2. It would lack all amino acid sequences distal to B2. This structure results from the fact that the PstI sites which define the 210 bp fragment are located in the B repeating structures at positions corresponding to homologous sequences, and in the same relation to the reading frame of the protein. Polyacrylamide gel electrophoretic analysis revealed that E. coli bearing this DNA produced a protein with IgG-binding activity of approximately the expected size [Fahnestock, et al., J. Bacteriol. 167:870-880 (1986)].

These results indicate that the presence of the B repeated structure is a necessary and sufficient condition for IgG-binding activity of protein G. It was therefore concluded that the B repeating structure was the locus of IgG-binding activity in the molecule.

EXAMPLE IV

Expression of the Protein G Gene in Bacillus Subtilis

A synthetic oligonucleotide with a sequence resembling g transcription terminator was first inserted into mGX4547. The sequence of the oligonucleotide was:

5'-pTCGAAAAAAGAGACCGGATATCCGGTCTCTTTTT-3' It is self-complementary, and when double-stranded, produces single stranded ends with the same sequence as those produced by endonuclease SalI. To insert it into mGX4547, the phage DNA was digested with endonuclease SalI, phenol extracted and ethanol precipitated, then incubated with the synthetic oligonucleotide (which had been denatured by heating to 70.degree. C. and slowly cooled to 23.degree. C.) and DNA ligase under ligating conditions. Ligated DNA was used to transfect E. coli GX1210, and clones where screened for the loss of the SalI site and appearance of an EcoRV site, the recognition sequence for which is present on the synthetic oligonucleotide. One clone with the desired structure was designated mGX7872.

Next, sequences distal to the B2 repeated sequence were deleted from mGX7872. This was accomplished by oligonucleotide-directed in vitro mutagenesis. The following oligonucleotide was synthesized:

5'-pCGTTTTGAAGCGACCGGAACCTCTGTAACC-3'.

This sequence is complementary on one half to sequences in mGX4547 immediately distal to the B2 sequence, and on the other half to sequences near those coding for the C-terminus of protein G. This oligonucleotide was used as a primer for the in vitro synthesis of double stranded RF DNA, with mGX4547 DNA as template, using standard methods. This DNA was used to transfect E. coli GX1210. Plaques were screened in situ for the ability of phage DNA they produced to hybridize to the radioactive oligonucleotide 5'-(32P)AGCGACCGGAACCTC-3', which is complementary to the desired deleted sequence. One clone with the desired structure was identified and designated mGX7877. Its structure was verified by DNA sequence analysis. The deletion encompasses nucleotides 1651-1896 of the sequence shown in FIG. 3.

In order to allow fusion of the protein G coding sequence to an expression and secretion vector, a BamHI site was created in the sequence of mGX7877 by oligonucleotide-directed in vitro mutagenesis. A primer oligonucleotide, with the sequence,

5'-pGGTATCTTCGATTGGATCCGGTGAATCAACAGCGAATACCG-3', was used to promote conversion of mGX7877 single stranded DNA to duplex DNA in vitro. This oligonucleotide was complementary to the sequence encoding protein G in mGX7877, but includes an additional 6 nucleotides, GGATCC, which comprise the recognition sequence for endonuclease BamHI, inserted near the beginning of the sequence encoding mature protein G (the product of removal of the secretion signal sequence). The resulting double stranded DNA was used to transfect E. coli GX1210. The RF DNA recovered from cells infected from plaques was screened for the presence of the BamHI site. Once with the desired structure was designated mGX8402.

A secretion vector containing the promoter and secretion signal sequence derived from a Bacillus amyloliquefaciens gene encoding subtilisin (apr) has been described by Vasantha and Thompson [J. Bacteriol. 165:837-842 (1984); and U.S. patent application Ser. No. 618,902, filed Jun. 8, 1984, and the continuation-in-part thereof, U.S. patent application Ser. No. 717,800, filed Mar. 29, 1985]. This vector, pGX2134, contains a BamHI site near the end of sequences encoding the secretion signal sequence, to which heterologous genes can be fused in order to promote their expression in B. subtilis, and the secretion of the protein product from the cell. In order to fuse protein G-encoding sequences to this vector, pGX2134 DNA was digested with endonucleases BamHI and PvuII. The RF DNA from mGX8402 was digested with endonucleases BamHI and SmaI. After extraction with phenol and precipitation with ethanol, the digested DNA preparations were mixed and incubated with DNA ligase under ligation conditions, and the ligated DNA was used to transform B. subtilis GX8008 (apr deletion, npr deletion, spoOA677) protoplasts by standard methods. Transformants were selected for resistance to chloramphenicol and screened for production of protein G by colony immuno-assay. A positive transformant was identified and designated GX8408 (pGX4582). The plasmid pGX4582 was shown to have the structure indicated in FIG. 7 by restriction analysis. It was presumably formed by insertion into pGX2134, between the BamHI and PvuII sites, of the BamHI fragment of mGX8402 bearing the protein G coding sequences, plus the small BamHI-SmaI fragment which is distal to the coding sequences in mGX8402.

Strain GX8408 was shown to produce a protein with the IgG-binding activity of protein G. This strain, where sequences distal to the B2 sequences are deleted, exhibited enhanced secretion of protein G-like material. After growth in appropriate media [Fahnestock and Fisher, J. Bacteriol. 165:796-804 (1984)[, culture supernatants and cell-associated fractions were recovered and subjected to sodium dodecyl sulfate-polyacrylamide gel electrophoretic analysis. After electrophoretic separation, protein bands were transferred to nitrocellulose and stained immunochemically as described in Example I. Material with IgG-binding activity was found in both the culture supernatant and cell-associated fractions.

EXAMPLE V

Cloning the Gene Encoding Protein G from Streptococcus GX7805

Chromosomal DNA was isolated from a group G Streptococcus clinical isolate designated GX7805 as described in Example I. A sample of the DNA was digested with restriction endonuclease HindIII and subjected to electrophoresis in a 1% agarose gel under standard conditions. The usefulness of HindIII for this purpose was indicated by restriction analysis of pGX4533 (Example I and FIG. 2) whereby it was determined that a HindIII site separated the protein G gene from adjacent downstream sequences which were shown to be responsible for preventing establishment of larger fragments on multicopy plasmids in E. coli. After electrophoresis, DNA fragments were transferred to nitrocellulose as described by Southern J. Mol. Biol. 98:503 (1975). A band of approximately 2.4 kbp containing protein G-encoding sequences was located by hybridization with a radioactive probe consisting of the 1.9 kbp HindIII fragment indicated in FIG. 2, originally isolated from Streptococcus strain GX7809. The 1.9 kbp fragment probe was purified by agarose gel electrophoresis and eluted from the gel as described in Example I, then radioactively labeled with 32P by nick translation essentially as described by Rigby, et al. J. Mol. Biol. 113:237 (1977). Hybridization was carried out essentially as described by Wahl et al. [ Proc. Natl. Acad. Sci. U.S.A. 76:3683-3687 (1979)]. After hybridization and washing to remove unhybridized probe, a radioactive band was located by autoradiography at a position corresponding to a length of 2.4 kbp.

A larger sample of the same GX7805 chromosomal DNA (6 ul) was digested with endonuclease HindIII, and the fragments were separated by electrophoresis in a 1% agarose gel (16 h at 0.35 volts/cm). After staining with ethidium bromide, portions of the gel containing bands of length 2-3 kbp (located relative to a standard consisting of endonuclease HindIII-digested bacteriophage lambda DNA) were excised and crushed to aid in the recovery of the DNA. The DNA was recovered after extraction with phenol as described in Example I.

Plasmid vector pGX1066 DNA (1 ug) was digested with endonuclease HindIII. Following extraction of the reaction mixture with phenol/chloroform/isoamyl alcohol (25:24:1), the DNA was precipitated by adding 0.1 volume 4M LiCl, 10 mM EDTA, 20 ug glycogen carrier, and 2.5 vol. 95% ethanol. 0.4 ug of the digested vector DNA was incubated with the recovered HindIII fragments of GX7805 DNA (90% of the material recovered from 6 ug chromosomal DNA) and T4 DNA ligase (International Biotechnologies, Inc., New Haven, Conn.), under ligation conditions as recommended by the manufacturer, in 20 ul, for 16 h at 15.degree. C.

E. coli SK2267 cells were transformed with 15 ul of the ligated DNA as described in Example I, and the transformed cells were plated on colony immunoassay plates and assayed for the production of immunoglobulin-binding protein as described in Example I. A positive colony was identified. Plasmid DNA isolated from this transformant was found to consist of pGX1066 with a DNA insert of 2.4 kbp. An endonuclease HindIII fragment comprising the insert was subcloned in a bacteriophage M13mp9 vector. The DNA sequence of the 2.4 kbp HindIII fragment was determined, and is presented in FIG. 9.

EXAMPLE VI

Construction of Preferred Forms of the Protein G Gene for Secretion by B. subtilis

Preferred forms of Protein G are encoded by genes from which coding sequences upstream and downstream from the active B repeats (Example III) have been deleted. Such proteins, which exhibit the immunoglobulin binding activity of protein G, have enhanced stability toward proteolysis.

A. Deletion of upstream sequences

In order to accomplish the deletion of upstream sequences, plasmid pGX4582 (Example IV) was first modified to contain a unique cleavage site for restriction endonuclease KpnI (see FIG. 11). DNA of pGX4582 was digested with endonuclease PvuII, which cuts at two sites, both upstream from the A repeats. After phenol extraction and ethanol precipitation, the linear plasmid fragment was then recircularized in the presence of a 5'-phosphorylated self-complementary oligonucleotide with the sequence 5'-P-CTGGGTACCCAG, which carries a recognition site for endonuclease KpnI, by treatment with T4 DNA ligase under ligation conditions. The ligated DNA was used to transform E. coli SK2267, and an ampicillin resistant transformant was isolated which contained a plasmid of the desired structure, which had acquired a unique KpnI site. This plasmid was designated pGX4590.

Next, the modified Protein G gene carried on pGX4590 was transferred to a bacteriophage M13 vector. DNA of pGX4590 was digested with endonucleases SmaI and SalI, which excise a fragment containing the entire Protein G encoding gene. Double stranded RF DNA of bacteriophage M13mp8 was also digested with SmaI and SalI, and both digested DNA preparations were extracted with phenol and precipitated with ethanol. The two preparations were then mixed and incubated with T4 DNA ligase under ligation conditions. The ligated DNA was used to transfect E. coli GX1210, and clones were screened for the presence of an insert fragment of the appropriate size. A clone containing the desired fragment was identified and designated mGX8434.

A second KpnI site was then created in the Protein G coding sequence carried on mGX8434, using the techniques of oligonucleotide-directed mutagenesis. An oligonucleotide was synthesized with the sequence

5'-GTCAGTCTTAGGTAATGGGTACCCAGCTAAAATTTCATCTATCAG which is complementary to sequences carried on mGX8434 adjacent to those encoding domain B1, but carries a six-nucleotide insertion which comprises a recognition site for endonuclease KpnI. With single stranded DNA isolated from phage mGX8434 as template and the above defined oligonucleotide as primer, double stranded RF DNA was synthesized in vitro using standard methods. This DNA was used to transfect E. coli GX1210, and clones were screened for the presence of a second KpnI site. A clone with the desired structure was identified and designated mGX8441.

DNA of mGX8441 contains two KpnI sites, both created as described above, in such a manner that deletion of the sequences between them will create an in-frame fusion of sequences upstream from the first site and those downstream from the second. This deletion was accomplished by digesting RF DNA of mGX8441 with endonuclease KpnI, phenol-extracting and ethanol-precipitating the digested DNA, then recircularizing the larger RF fragment by incubating in dilute solution with T4 DNA ligase under ligation conditions. The ligated DNA was used to transfect E. coli GX1210, and clones were screened for loss of the small KpnI fragment. A clone with the desired structure was designated mGX8442. The structure of mGX8442 at the site of deletion was verified by DNA sequencing. It encodes a protein predicted to be the same as that encoded by pGX4582 from its N-terminus through amino acid residue Ala 38 of Protein G, followed by the sequence GlyTyrPro, encoded by the KpnI recognition sequence, then the sequence LeuProLysThrAsp (preceding domain B1) of pGX4582, and the remainder of the coding sequence of pGX4582.

In order to establish the coding sequence of mGX8442 in B. subtilis, the plasmid pGX4370 was used as a vector. This plasmid is similar to the plasmid pGX4312, which is described by P. Bryan et al. in U.S. patent application Ser. No. 828,545 (filed Feb. 12, 1986), except that it contains additional sequences derived from a B. amyloliquefaciens subtilisin-encoding gene. These sequences comprise a promoter, translation initiation sequences, and sequences encoding the secretion signal sequence, followed by a BamHI recognition sequence. They are derived form pGX2134, which is described in Example IV. The vector also carries replication origins active in both B. subtilis and E. coli, and markers which can be selected in both organisms (kanamycin resistance in B. subtilis and ampicillin resistance in E. coli). Plasmid pGX4370 DNA was digested with endonucleases BamHI and HindIII, phenol extracted and ethanol precipitated. Similarly, mGX8442 RF DNA was digested with endonucleases BamHI and HindIII, phenol extracted and ethanol precipitated. The digested DNA preparations were mixed and incubated with T4 DNA ligase under ligation conditions. The ligated DNA was used to transform E. coli SK2267, and an ampicillin resistant transformant with the desired structure was identified by restriction analysis and designated pGX4595. Plasmid pGX4595 DNA was then used to transform protoplasts of B. subtilis GX8008. A kanamycin resistant transformant, designated GX8446, was shown, by analysis similar to that outlined in Example IV above, to produce protein with the immunoglobulin binding activity of Protein G, and this protein could be detected in both the extracellular medium and the cell lysate fractions.

B. Deletion of Downstream Sequences

The starting point for constructions from which downstream sequences were variously deleted was a derivative of mGX7872 (Example IV) into which a site for endonuclease XhoI was inserted by oligonucleotide-directed mutagenesis following sequences encoding domain B2 (see FIG. 12). For this purpose, an oligonucleotide was synthesized with the sequence

5'-CAGTTGGTGCATCACCTCGAGGAACCTCTGTAACC which is complementary to Protein G encoding sequences on mGX7872 immediately downstream from those encoding domain B2, but which contains a three-nucleotide insertion which creates an XhoI site. With single stranded DNA isolated from mGX7872 as template, and this oligonucleotide as primer, double stranded RF DNA was synthesized in vitro by standard methods, and used to transfect E. coli GX1210. Clones were screened for the presence of an XhoI site, and one with the desired structure was designated mGX7875. The altered sequence in mGX7875 was verified by DNA sequencing and shown to be as desired.

A KpnI site was then inserted into mGX7875 close to sequences encoding domain B1, at the position analogous to the second KpnI site inserted into mGX8434, which is described above. The same oligonucleotide, and methods analogous to those described above (for construction of mGX8441) were used. A clone with the desired structure was identified and designated mGX8447.

Downstream sequences derived from mGX8447 were then used to replace those present in pGX4595. For this purpose, RF DNA of mGX8447 and DNA of pGX4595 were separately digested with endonucleases KpnI and HindIII, phenol extracted and ethanol precipitated. The digested DNA preparations were mixed and incubated with T4 DNA ligase under ligation conditions. The ligated DNA was used to transform E. coli SK2267, and an ampicillin resistant transformant carrying a plasmid with the desired structure was identified by restriction analysis, and designated pGX4596. This plasmid is similar to pGX4595, except that sequences encoding the active portion of Protein G and downstream sequences (from the KpnI site preceding B1 to the HindIII site following the C-terminal coding sequences) are derived from mGX8447.

Plasmid pGX4596 was then used as starting point for various deletions involving downstream sequences. First, pGX4596 DNA was digested with endonuclease XhoI, which cuts at the site created by oligonucleotide-directed mutagenesis, described above, near the downstream end of sequences encoding domain B2, and HindIII, which cuts downstream form the end of the coding sequence. This digested DNA was subjected to preparative electrophoretic fractionation on a 0.7% agarose gel, and the larger of the two resulting fragments was eluted from the gel and recovered. A double stranded oligonucleotide adapter was constructed with the following structure: ##STR23##

The purified large XhoI-HindIII fragment derived from pGX4596 was recircularized in the presence of this adapter, the single stranded ends of which are complementary to the single stranded ends of the large fragment. This was accomplished by incubation of the fragment and adapter together in the presence of T4 DNA ligase under ligation conditions. The ligated DNA was used to transform E. coli SK2267, and an ampicillin resistant transformant carrying a plasmid with the desired structure was identified by screening for the presence of the endonuclease PvuI site which is present in the adapter sequence. This plasmid was designated pGX4597. It carries a truncated Protein G. gene with the following designed structure ##STR24## The C-terminal Cys residue encoded by the synthetic adapter in this construction is unique in the Protein G sequence encoded by this gene. One skilled in the relevant art will recognize that such a unique residue can provide a favorable site to which chemical reactions can be directed, such as those designed to immobilize the protein on a solid matrix or to attach various chemical functionalities or other proteins to it.

A second downstream deletion encompassed sequences downstream from repeat C5. This construction made use of an endonuclease XmnI site derived from the sequence at residue 1815 of the DNA sequence shown in FIG. 8. Plasmid pGX4596 contains a total of four XmnI sites. In order to obtain molecules cleaved only at the desired site in the Protein G coding sequence, pGX4596 DNA (5 micrograms per ml) was subjected to partial digestion with XmnI (100 units per ml) in the presence of ethidium bromide (40 micrograms per ml), for 60 min at 37.degree. C. Under these conditions, digestion is mainly limited to a single cleavage, which results in a mixed population of linear molecules generated by cleavage at any one of the four sites. This digested DNA was extracted with phenol/chloroform/isoamyl alcohol (25:24:1) and precipitated with ethanol, removing both the ethidium bromide and XmnI enzyme. The mixed linear DNA was then digested with HindIII. The HindIII site is located closer to the XmnI site in the Protein G coding sequence than to any of the other XmnI sites. The largest HindIII-XmnI fragment generated by digestion of the mixed XmnI linear population with HindIII is therefore derived from pGX4596 molecules which were cut only at the XmnI site in the Protein G coding sequence. This fragment was purified by preparative electrophoretic fractionation on a 0.7% agarose gel. The band with lowest mobility was excised, eluted from the gel, and recovered.

A double stranded oligonucleotide adapter was constructed with the structure ##STR25## The single stranded end of this oligonucleotide is complementary to the single stranded end of the pGX4596 fragment, generated by HindIII cleavage. The purified fragment was recircularized in the presence of this adapter by incubation with T4 DNA ligase under ligation conditions. The ligated DNA was used to transform E. coli SK2267, and an ampicillin resistant transformant containing a plasmid with the desired structure was identified by restriction analysis. This plasmid was designated pGX4599. It carries a truncated Protein G gene with the following designed structure: ##STR26## Plasmids pGX4597 and pGX4599 were used separately to transform protoplasts of B. subtilis GX8008. Kanamycin resistant transformants were selected and designated GX8455 (pGX4597) and GX8457 (pGX4599). Both strains were found to synthesize protein with the immunoglobulin binding activity of Protein G, and in both cases this protein was detected in both the extracellular medium and the cell lysate fractions.

EXAMPLE VII

Construction of a Preferred Form of the Protein G gene and Expression in E. coli of the Protein G Variant Type 1

Derivatives of the Protein G gene with various deletions were fused to a regulatable promoter system for advantageous expression in E. coli. The promoter used was a hybrid bacteriophage lambda promoter (OLPR) constructed by in vitro methods, and described by McKenney et al. in U.S. patent application Ser. No. 534,982 (filed Sep. 23, 1983). This promoter is carried on a plasmid pGX2606, which includes the translation initiation site of the phage lambda cro gene, with a BamHI site, situated as follows: ##STR27##

In order to permit sequences encoding the "B-domains" derived from phage mGX7877 (Example IV) to be fused to the E. coli expression vector pGX2606, a BamHI site was inserted in the correct frame in mGX7877 DNA by oligonucleotide-directed in vitro mutagenesis (see FIG. 14). The following oligonucleotide was synthesized: ##STR28##

The sequence of this oligonucleotide is complementary to those in mGX7877 encoding the region between domains A2 and B1, but contains a 6-nucleotide insertion which constitutes a recognition site for endonuclease BamHI, in the correct frame for subsequent fusion to the expression signals in pGX2606.

This oligonucleotide was used as primer to convert single-stranded mGX7877 DNA to duplex DNA in vitro. The resulting duplex DNA was used to transfect E. coli GX1210. The RF DNA recovered form cells infected from plaques was screened for the presence of the BamHI site. One with the desired structure was designated mGX7893.

Double-stranded RF DNA of mGX7893 was digested with endonucleases BamHI and HindIII, and the digested DNA was fractionated by agarose gel (1%) electrophoresis. The smaller of the two linear DNA bands produced, which contains sequences encoding the B1 and B2 domains of protein G, was recovered by elution from the gel. DNA of plasmid pGX2606 was digested with endonucleases BamHI and Hind III, and the longer linear fragment recovered by phenol extraction and ethanol precipitation. The purified mGX7893 fragment was mixed with the recovered pGX2606 DNA and incubated with T4 DNA ligase under ligation conditions. Ligated DNA was sued to transform E. coli GX1201, selecting for ampicillin resistance at 30.degree. C. Transformants were screened for production of IgG binding protein at 42.degree. C., as described in Example VII. One positive transformant was designated GX8436, and found to contain plasmid pGX4592, with the desired structure.

The N-terminal coding sequence of pGX4592, verified directly by DNA sequencing, is as follows: ##STR29##

The DNA sequence of the entire gene which encodes this Protein G variant is as follows: ##STR30##

Under appropriate fermentation conditions, with expression induced at 42.degree. C. continued at 39.degree. C. strain GX8436 was shown to produce a protein of the expected size with binding activity for human IgG. This protein has been designated protein G variant Type 1. The amino acid sequence of this variant is as follows: ##STR31##

EXAMPLE VIII

Construction of Preferred Forms of the Protein G Gene for Expression in E. coli to Give Protein G Variants Type 2 and 3

Derivatives of the Protein G gene with various deletions were fused to a regulatable promoter system for advantageous expression in E. coli. The promoter used was a hybrid bacteriophage lambda promoter (OLPR) constructed by in vitro methods, and described by McKenney et al. in U.S. patent application Ser. No. 534,982 (filed Sep. 23, 1983). This promoter is carried on a plasmid pGX2606, which includes the translation initiation site of the phage lambda cro gene, with a BamHI site, situated as follows: ##STR32## In order to fuse modified Protein G genes derived from those carried on pGX4597 and pGX4599 at the BamHI site of the vector pGX2606, BamHI sites were created in pGX4597 and pGX4599, at the unique KpnI sites of those plasmids. For this purpose, a self-complementary oligonucleotide linker was synthesized with the following structure:

5'P-GGATCCGTAC CATGCCTAGG-5'P The single stranded ends of this double stranded linker are complementary to the single stranded ends generated by digestion of the plasmids with endonuclease KpnI, and the linker incorporates a recognition site for endonuclease BamHI.

DNA of plasmids pGX4597 and pGX4599 were separately digested with endonuclease KpnI, phenol extracted and ethanol precipitated (see FIG. 13). The digested DNA preparations were then incubated with the phosphorylated linker oligonucleotide and T4 DNA ligase under ligation conditions. DNA ligase was inactivated by incubation at 70.degree. C. for 3 min, and the ligated DNA preparations were then digested with endonucleases BamHI and HindIII. Each digested DNA preparation was then subjected to preparative electrophoretic fractionation on a 1% agarose gel. The fragment of mobility corresponding to a length of between 400 and 700 bp was excised, extracted from the gel, and recovered. DNA of plasmid pGX2606 was digested with endonucleases BamHI and HindIII, and subjected to preparative electrophoresis on a 0.7% agarose gel to remove the small BamHI-HindIII fragment. The larger band was excised, eluted, and recovered.

The recovered pGX2606 fragment was mixed separately with the recovered pGX4597 and pGX4599 fragments, and incubated with T4 DNA ligase under ligation conditions. The ligated DNA preparations were used separately to transform E. coli GX1201 (nadA::Tn10 delta 4(chlD-blu) lambda cI857 delta BamHI)), a phage lambda lysogen carrying the cI857 gene encoding a thermolabile repressor protein. Transformants were selected at 30.degree. C. for ampicillin resistance and screened by a variation of the immunoassay procedure described in Example I. Cells were grown at 30.degree. C. on a cellulose acetate filter atop a nitrocellulose filter on a standard nutrient agar plate. After visible colonies had appeared, the plates were incubated at 42.degree. C. for 4-6 hours, then the nitrocellulose filter was developed as described in Example I. A positive transformant identified in this way was found to contain plasmid of the desired structure by restriction analysis. The plasmid containing pGX4597-derived sequences was designated pGX5203, and the E. coli strain containing this plasmid was designated GX8464. The plasmid containing pGX4599-derived sequences was designated pGX5204, and the E. coli strain containing this plasmid was designated GX8465.

The designed structures of the modified Protein G genes carried by pGX5203 and pGX5204 are the same at the N-terminus: ##STR33## The C-terminal sequences are the same as those of pGX4597 and pGX4599, respectively (Example VI).

Both GX8464 and GX8465 were shown to produce protein variants with the immunoglobulin binding activity of Protein G. In addition, both strains exhibited enhance production and produced about 200 mg of recovered protein-G like material per liter of bacterial culture. Synthesis of this protein was found to be repressed at 30.degree. C. , and induced at 42.degree. C., the mode of regulation expected of a gene under control of the hybrid phage lambda promoter OLPR in the presence of the thermolabile repressor encoded by the CI857 gene.

The amino acid sequence of the protein G variant (type 2) produced by GX8465 is as follows: ##STR34##

The DNA sequence of the gene which encodes this Protein G variant (type 2) is as follows: ##STR35##

The amino acid sequence of the protein G variant (type 3) produced by GX8464 is as follows: ##STR36##

The DNA sequence of the gene which encodes this Protein G variant (type 3) is as follows: ##STR37##

EXAMPLE IX

Construction of the Protein G Gene and Expression in E. coli to Give Protein G Variant Type 5

Plasmid pGX4599 was used to transform E. coli GM272, a strain which lacks the dam methylase. Plasmid DNA obtained from one such transformant was digested with restriction endonuclease ClaI. Because of the absence of dam-induced methylation in this DNA, digestion produced two fragments. These fragments were recovered by phenol extraction and ethanol precipitation.

A synthetic self-complementary oligonucleotide adapter was constructed with the following sequence: ##STR38##

This double-stranded oligonucleotide has single-stranded ends complementary to those generated by endonuclease ClaI and contains a recognition sequence for endonuclease BamHI.

The 5'-phosphorylated oligonucleotide adapter was mixed with the recovered pGX4599 DNA fragment. The mixture was incubated with T4 DNA ligase under ligation conditions at a DNA concentration of approximately 10 micrograms per ml. After ligation, the recircularized DNA was used to transform E. coli SK2267, selecting for ampicillin resistance. Only one of the two fragments contains a replication origin active in E. coli and the selectable ampicillin resistance marker, so only recircularized DNA containing this fragment can transform E. coli. Transformants were screened by restriction analysis of plasmid DNA, and one containing plasmid with the desired structure (pGX5241) was identified.

Plasmids pGX5241 and pGX2606 were both digested with endonucleases HindIII and BamHI. Digested DNA was recovered following phenol extraction and ethanol precipitation. The two digested plasmids were mixed in ligation buffer at approximately 50 micrograms DNA per ml and ligated in the presence of T4 DNA ligase. Ligated DNA was used to transform E. coli GX1201, selecting for ampicillin resistance at 30.degree. C., and transformants were screened by restriction analysis of plasmid DNA. One containing plasmid with the desired structure (pGX5245) was designated strain GX8822. The correct structure was verified by DNA sequencing. The DNA sequence of the gene which encodes this Protein G variant is as follows: ##STR39##

Strain GX8822 was found to produce a protein of the expected size with the ability to bind to human IgG. This protein G variant contains a single IgG binding sequence B2 (from GX7809 protein G), the adjacent proline-rich region, and the "C-repeats." The predicted amino acid sequence for this Protein G variant type 5 is as follows: ##STR40##

EXAMPLE X

Construction of Protein G Genes Encoding Protein G Variants Types 6 and 11

Plasmid pGX5204 DNA was digested with restriction endonuclease PstI, and the long linear fragment was isolated following electrophoretic fractionation on a 1% agarose gel, and elution of the purified fragment from the gel. DNA of plasmid pGX4584 (which consists of the vector pGX1066 plus a DNA insert of 2.4 kbp containing the protein G gene isolated from Streptococcus GX7805 (see Example V), was subjected to partial digestion with PstI, under conditions such that significant quantities of a 420 bp fragment derived from the region encoding the IgG-binding domains of protein G were present. This 420 bp PstI fragment was isolated following agarose gel (1.5%) electrophoresis and elution from the gel.

The long PstI fragment of pGX5204 and the 420 bp PstI partial digest fragment from pGX4583 were mixed and ligated with T4 DNA ligase. The ligated DNA was used to transform E. coli GX1201, and transformants were screened by restriction analysis of plasmid DNA. Plasmids of two types were identified. One (pGX5247) was derived from the plasmid pGX5204 by substituting the 420 bp PstI fragment of pGX4583 for the 210 bp fragment present in pGX5204. The strain containing pGX5247 was designated GX8825 and was shown to produce an IgG-binding protein of the expected size. The predicted structure of this protein (type 6) is as follows: ##STR41##

The DNA sequence of the gene which encodes this Protein G variant (type 6) is as follows: ##STR42##

The sequence contains three "B repeats," the amino acid sequences of which are identical to those of protein G derived from Streptococcus GX7805, plus the adjacent proline-rich region and the "C-repeats" of protein G.

The second type of plasmid (pGX5246) isolated from among the above transformants was derived from pGX5204 by recircularization of the long PstI fragment without an insert. In this plasmid, therefore, the short 210 bp PstI fragment of pGX5204 is deleted. The strain containing pGX5246 was designated GX8824. The predicted structure of the protein produced by GX8824 (type 11) is shown below: ##STR43##

The DNA sequence of the gene (type 11) which encodes this Protein G variant is as follows: ##STR44##

This sequence contains a single "B repeat" sequence which is a chimera of sequences derived from sequences B1 and B2 of GX7809 protein G.

EXAMPLE XI

Construction of a Protein G Gene Encoding Protein G Variant Type 7

Plasmid pGX4595 was used to transform E. coli GM272, a strain which lacks the dam methylase. Plasmid DNA obtained from one such transformant was digested with restriction endonuclease ClaI. Because of the absence of dam-induced methylation in this DNA, digestion produced two fragments. These fragments were recovered by phenol extraction and ethanol precipitation.

A synthetic self-complementary oligonucleotide adapter was constructed with the following sequence: ##STR45##

This double-stranded oligonucleotide has single-stranded ends complementary to those generated by endonuclease ClaI, and contains a recognition sequence for endonuclease BamHI.

The 5'-phosphorylated oligonucleotide adapter was mixed with the recovered pGX4595 DNA fragment. The mixture was incubated with T4 DNA ligase under ligation conditions at a DNA concentration of approximately 10 micrograms per ml. After ligation, the recircularized DNA was used to transform E. coli SK2267, selecting for ampicillin resistance. Only one of the two fragments contains a replication origin active in E. coli and the selectable ampicillin resistance marker, so only recircularized DNA containing this fragment can transform E. coli. Transformants were screened by restriction analysis of plasmid DNA, and one containing plasmid with the desired structure (pGX5240) was identified.

Plasmids pGX5240 and pGX2606 were both digested with endonucleases HindIII and BamHI. Digested DNA was recovered following phenol extraction and ethanol precipitation. The two digested plasmids were mixed in ligation buffer at approximately 50 micrograms DNA per ml and ligated in the presence of T4 DNA ligase. Ligated DNA was used to transform E. coli GX1201, selecting for ampicillin resistance at 30.degree. C., and transformants were screened by restriction analysis of plasmid DNA. One containing plasmid with the desired structure (pGX5244) was designated strain GX8821. The correct structure was verified by DNA sequencing. The DNA sequence of the gene which encodes this Protein G variant is as follows: ##STR46##

Strain GX8821 was found to produce a protein of the expected size with the ability to bind to human IgG. The predicted structure of this protein is as follows: ##STR47##

This structure contains a single IgG binding sequence B2 (from GX7809 protein G) plus several amino acid residues derived from the C-terminus of the natural protein.

EXAMPLE XII

Construction of a Protein G Gene Encoding Protein G Variant Type 8

DNA of plasmid pGX5204 was digested with endonuclease HindIII, and linear DNA was recovered by phenol extraction and ethanol precipitation. A self-complementary synthetic DNA linker was constructed with the following sequence: ##STR48##

This double-stranded oligonucleotide has single-stranded ends complementary to those generated by endonuclease HindIII, plus a recognition sequence for endonuclease StuI. Linearized pGX5204 DNA was mixed with the 5'-phosphorylated oligonucleotide in ligation buffer and incubated with T4 DNA ligase. The ligated DNA was used to transform E. coli GX1201 and transformants were screened by restriction analysis of plasmid DNA (for the presence of the StuI site). A transformant with the desired plasmid (pGX5254) was identified.

DNA of pGX5254 was digested with endonuclease NaeI. Digestion was found to be incomplete, so linear molecules were purified from the digest by agarose gel (1%) electrophoresis, eluted from the gel, and recovered. The recovered linear molecules were then digested with StuI, and the long linear fragment recovered by phenol extraction and ethanol precipitation. Both of these enzymes leave blunt ends. The linear DNA was then recircularized by incubation at approximately 10 micrograms per ml in ligation buffer with T4 DNA ligase. The desired effect on the DNA structure is an follows: ##STR49##

An in-frame fusion is formed, the effect of which is to substitute a ProSerCys sequence at the C-terminus in place of the C-terminal Gly of the protein encoded by pGX5204.

The recircularized DNA was used to transform E. coli GX1201, and transformants were screened by restriction analysis of plasmid DNA (for loss of the NaeI site). One with the desired structure (pGX5255) was designated strain GX8833. This strain was shown to produce an IgG-binding protein of the expected size, with approximately one Cys residue per molecule. The structure of the C-terminal coding region of pGX5255 was verified directly by DNA sequencing.

The DNA sequence of the gene which encodes this Protein G variant is as follows: ##STR50##

The predicted amino acid sequence of the Protein G variant expressed by this gene is as follows: ##STR51##

EXAMPLE XIII

Construction of a Protein G Gene Encoding Protein G Variant Type 9

DNA of plasmid pGX5204 was digested with endonuclease HindIII, and linear DNA was recovered by phenol extraction and ethanol precipitation. A double-standed synthetic DNA linker was constructed with the following sequence: ##STR52##

This double-stranded olionucleotide has single-stranded ends complementary to those generated by endonuclease HindIII, plus recognition sequences for endonucleases HpaI and PvuII. Linearized pGX5204 DNA was mixed with the 5'-phosphorylated oligonucleotide in ligation buffer and incubated with T4 DNA ligase. The ligated DNA was used to transform E. coli GX1201 and transformants were screened by restriction analysis of plasmid DNA (for the presence of the PvuII site). The linker can be ligated to the linearized plasmid DNA in either of two orientations. Therefore, several transformants containing plasmids which had acquired the linker (PvuII site) were identified, some of which were expected to contain the linker in the desired orientation (e.g., pGX5267).

DNA of pGX5267 was digested with endonuclease HpaI, and the linear DNA recovered by phenol extraction and ethanol precipitation. The linear DNA was then recircularized by incubation at approximately 10 micrograms per ml in ligation buffer with T4 DNA ligase. The desired effect on the DNA structure is as follows: ##STR53##

An in-frame fusion is formed, the effect of which is to detect the C-repeats present in the GX5204-encoded protein, and to substitute a SerCys sequence at the C-terminus. This creates a Cys residue which is unique in the protein. Note that if the linker were present in the opposite orientation, deletion between the two HpaI sites would remove the PvuII site and the HindIII site.

The recircularized DNA was used to transform E. coli GX1201, and transformants were screened by restriction analysis of plasmid DNA (for shortening of the BamHI-HindIII fragment which contains the protein G coding sequence). Several such deleted plasmids were identified. In order to determine which had originally acquired the DNA linker in the desired orientation, the plasmids were screened for the presence of the HindIII and PvuII sites. One with the desired structure (pGX5268) was designated strain GX8846. The DNA sequence of the gene which encodes this Protein G variant is as follows: ##STR54##

The predicted amino acid sequence of the Protein G variant expressed by this strain is as follows: ##STR55##

EXAMPLE XIV

Construction of a Protein G Gene Encoding Protein G Variant Type 10

Plasmid pGX4599 was used to transform E. coli GM272, a strain which lacks the dam methylase. Plasmid DNA obtained from one such transformant was partially digested with restriction endonuclease ClaI under conditions where significant quantities of full-length linear DNA were formed. There are two ClaI sites in pGX4599. Because of the absence of dam-induced methylation in this DNA, both of these sites are available for cleavage by ClaI. The once-cut linear DNA is therefore of two types. This linear DNA was purified by agarose gel electrophoretic fractionation and elution from the gel, followed by digestion with endonuclease XhoI. The longest fragment so generated was again purified by agarose gel electrophoresis, eluted and was then recovered.

A double-stranded synthetic oligonucleotide adapter was constructed with the following sequence: ##STR56##

This oligonucleotide has single-stranded ends complementary to those generated by endonucleases ClaI and XhoI, respectively, and a recognition site for endonuclease AatII.

The purified ClaI-XhoI fragment from pGX4599 was mixed with the 5'-phosphorylated adapter oligonucleotide in ligation buffer and incubated with T4 DNA ligase. The ligated DNA was used to transform E. coli DH5alpha (F-, endA1, hsdR17, supE44, thi-1, recA1, gyrA96, relA1, delta (argF-lacZYA)U169, phi80dlacZdeltaM15; available from Bethesda Research Laboratories, Inc.), and transformants were screened by restriction analysis of plasmid DNA (for decrease in the size of the BamHI-HindIII fragment containing the protein G coding sequences). One containing a plasmid with the desired structure (pGX5265) was identified.

Joining the ClaI and XhoI ends of the linear molecule through the synthetic adapter oligonucleotide produces an in-frame fusion: ##STR57##

In order to fuse the modified Protein G gene carried on pGX5265 at the BamHI site of the vector pGX2606, a BamHI site was created in pGX5265 at the unique KpnI sites of that plasmid. For this purpose, a self-complementary oligonucleotide linker was synthesized with the following structure:

5'P-GGATCCGTAC CATGCCTAGG-5'P

The single-stranded ends of this double-stranded linker are complementary to the single-stranded ends generated by digestion of the plasmid with endonuclease KpnI, and the linker incorporates a recognition site for endonuclease BamHI.

DNA of plasmid pGX5265 was digested with endonuclease KpnI, phenol extracted and ethanol precipitated. The digested DNA preparation was then incubated with the phosphorylated linker oligonucleotide and T4 DNA ligase under ligation conditions. DNA ligase was inactivated by incubation at 70.degree. C. for 5 min, and the ligated DNA preparation was then digested with endonucleases BamHI and HindIII. The digested DNA preparation was then subjected to preparative electrophoretic fractionation on a 1.4% agarose gel. Two DNA fragments were observed on the ethidium bromide-stained gel, and the fragment of greater mobility was excised, extracted from the gel, and recovered. DNA of plasmid pGX2606 was digested with endonucleases BamHI and HindIII, and the large linear fragment recovered by phenol extraction and ethanol precipitation.

The recovered pGX2606 fragment was mixed with the recovered pGX5265 fragment, and incubated with T4 DNA ligase under ligation conditions. The ligated DNA preparation was used to transform E. coli GX1201. Transformants were selected at 30.degree. C. for ampicillin resistance and screened by restriction analysis of plasmid DNA (for the correctly sized BamHI-HindIII fragment). One was found to contain plasmid of the desired structure, pGX5266. This strain was designated GX8844.

The DNA sequence of the gene which encodes this Protein G variant is as follows: ##STR58##

The predicted amino acid sequence of the Protein G variant expressed by this strain is as follows: ##STR59##

Claims

1. A protein G variant having the immunoglobulin-binding properties of protein G, the polypeptide consisting essentially of the amino acid sequence:

2. A protein G variant having the immunoglobulin-binding properties of protein G, the polypeptide consisting essentially of the amino acid sequence: ##STR60##

3. A protein G variant having the immunoglobulin-binding properties of protein G, the polypeptide consisting essentially of the amino acid sequence: ##STR61##

4. A protein G variant having the immunoglobulin-binding properties of protein G, the polypeptide consisting essentially of the amino acid sequence: ##STR62##

5. A protein G variant having the immunoglobulin-binding properties of protein G, the polypeptide consisting essentially of the amino acid sequence: ##STR63##

6. A protein G variant having the immunoglobulin-binding properties of protein G, the polypeptide consisting essentially of the amino acid sequence: ##STR64##

7. A protein G variant having the immunoglobulin-binding properties of protein G, the polypeptide consisting essentially of the amino acid sequence: ##STR65##

8. A protein G variant having the immunoglobulin-binding properties of protein G, the polypeptide consisting essentially of the amino acid sequence: ##STR66##

9. A protein G variant having the immunoglobulin-binding properties of protein G, the polypeptide consisting essentially of the amino acid sequence: ##STR67##