Clostridium perfringens vaccine

FIELD OF THE INVENTION

The present invention refers to detoxified immunogenic derivatives of

Clostridium perfringens

β-toxin, DNA encoding such derivatives,

Clostridium perfringens

bacteria comprising DNA encoding such derivatives, Gram positive bacterial expression systems comprising DNA encoding such derivatives, non-

Clostridium perfringens

-based Gram positive bacterial expression systems expressing wild-type β-toxin, vaccines for combating

Clostridium perfringens

based thereon, methods for the preparation of native

Clostridium perfringens

β-toxin, methods for the preparation of detoxified immunogenic derivatives of

Clostridium perfringens

β-toxin and to methods for the preparation of vaccines for combating

Clostridium perfringens.

BACKGROUND OF THE INVENTION

Clostridium perfringens

(also known as

C. welchii

) is a species of the large genus Clostridium. All bacteria belonging to this genus are spore-forming, anaerobic, Gram positive bacilli. The species

C. perfringens

can be subdivided into subspecies. Five subspecies have been described. These subspecies are generally known as “type” A-E. All subspecies produce several toxins, both major and minor toxins. The four major toxins are the α, β, ε and ι toxin. All

C. perfringens

types produce the α-toxin. The β-toxin is produced by

C. perfringens

types B and C. In addition, a range of minor toxins is produced by all

C. perfringens

types.

It is mainly due to the presence of one or more of these various toxins in the five

C. perfringens

types that all

C. perfringens

species are pathogenic. Type A is known to be pathogenic for both man and pigs. Type B is mainly pathogenic for lamb, sheep and goat, and causes “lamb dysenteria” and haemorragic enteritis. Type C is pathogenic for man, sheep, calf, lamb, pig, and bird. It is the cause of “struck”, haemorragic enteritis, necrotic enteritis and enterotoxemia.

As mentioned above, both

C. perfringens

type B and type C are known to produce the β-toxin. The β-toxin is known to play the major role in the pathogenesis of necrotic enteritis in both man and animal. In man, this disease has been termed pigbel (Johnson et al.: Lancet ii: 496-500, (1987)). In animals, necrotic enteritis has been described in calves, lambs and pigs (Hauschild, A. H. W. in S. Kadis, T. C. Montie, (ed.) Microbial toxins, p. 159-188. Academic press, Inc, New York (1971) and Willis, T. A. Anaerobic bacteriology: clinical and laboratory practice, 3

rd

ed. Butterworths, London (1977).

The β-toxin from

Clostridium perfringens

has been isolated in pure form (Sakurai et al., Infect. & Immun. 18: 741-745 (1977), Sakurai et al., Toxicon 25: 1301-1310 (1987)). Much is still unknown about the biophysical properties of the toxin and thus about its mode of action. Due however to the fact that it could be obtained in a purified form the toxicity of β-toxin could be clearly demonstrated in animals. The lethal toxicity of purified β-toxin for e.g. mice and guinea-pigs was shown by Sakurai et al. (Infect. & Immun. 21: 678-680 (1978), Sakurai et al., Toxicon 25: 1301-1310 (1987)).

Recently, the nucleic acid sequence of the

Clostridium perfringens

β-toxin has been elucidated by Hunter et al. (Infect. & Immun. 61: 3958-3965 (1993)). The nucleic acid sequence revealed the size of the β-toxin protein to be about 35 kD.

Due to the fact that the role of

Clostridium perfringens

β-toxin from type B and C in pathogenesis is of such paramount importance, much effort has been put in the development of immunity against this toxin. Immunity against the β-toxin is sufficient to protect against

Clostridium perfringens

type B and type C infection. The only way of inducing immunity against the β-toxin is to administer the toxin to the animal to be protected. It is however obvious that the toxin must be given in a detoxified form, since otherwise administration would lead to severe illness or death of the animal.

Vaccines based on detoxified β-toxin, also called β-toxoid, were available already around 1960 (e.g. G.B. Pat. No. 901,433, and U.S. Pat. No. 3,288,680).

All currently available vaccines based on inactivated

Clostridium perfringens

β-toxin have, however, several important drawbacks. In the first place, all β-toxin-based vaccines comprise chemically detoxified, mainly formalin-detoxified, β-toxin and it was shown through the years that it is very difficult to standardise these chemical detoxification processes. The classical chemical methods for detoxification of proteins have the disadvantage that they alter the overall structure of the protein in a fairly random manner. And as a result, during the process of chemical detoxification the immunogenic properties of the β-toxin also rapidly decrease. This can be seen e.g. from FIG.

5

A and FIG.

5

B: in

FIG. 5B

it is shown that at least 1% formalin, a very commonly used inactivation-compound, is necessary to detoxify the β-toxin under certain standard conditions.

From

FIGS. 5A and B

, it can be seen, however, that the antigenicity titre decreases dramatically with an increasing amount of formalin. A full titre cannot be obtained anyway, because even the lowest amount of formalin needed for detoxification (

FIG. 5B

) already gives a decrease of the titre. This implicates that there is only a very narrow band, in which both detoxification and a reasonable titre and thus immunogenicity can be obtained. Given this very narrow band, and the fact that there are at least three variables: time of detoxification, temperature and precise formalin-concentration, it is clear that it is very difficult to reproducibly produce detoxified β-toxin. Another approach for the detoxification of β-toxin is therefore highly wanted. No acceptable alternative has been found until now, for the following reason: the delicate balance between a sufficient level of detoxification and remaining immunogenicity implicates a close link between, on the one hand, the structure of the protein and, on the other hand, the biological properties of the protein. It could therefore not be expected to change the protein structure to detoxify the protein, without at the same time significantly impairing the immunogenic characteristics of the protein.

SUMMARY OF THE INVENTION

It is one of the merits of the present invention that it discloses for the first time a way to avoid the above-mentioned problem: using genetic manipulation techniques, specific and relatively large amino acid regions were surprisingly found that can be mutated to provide the desired non-toxic derivatives of β-toxin without significantly impairing its necessary immunogenic properties.

BRIEF DESCRIPTION OF THE DRAWINGS

FIG.

1

A: structure of plasmid pTREX1ANEW. The coding sequence of the MLS antibiotic resistance marker is shown as a shaded box. Ori pAMB1: origin of replication from the plasmid pAMB1, MLS: macrolides, lincosamindes, streptogramin B antibiotic resistance gene. The structure of the expression cassette cloned between the EcoR1 and blunted Sac1 sites of plL253 is shown below. Different functional regions of the cassette are shown as hatched boxes. Unique restriction sites are indicated. SD: Shine Dalgarno sequence complementary to

L. lactis

16S rRNA, ATG: translation initiation codon served by SD.

FIG.

1

B: the complete pTREX1A sequence, including restriction enzyme positions.

FIG.

1

C: features of the highly similar pTREX1 expression cassette.

FIG.

1

D: oligonucleotides used to create the PCR derived promotor fragments used in pTREX7, −14 and −1A (shown 5′-3′)

FIG.

2

A: the TIR coupling vector pKS90, schematic representation of the pKS90 expression cassette.

FIG.

2

B: the complete pKS90 sequence, including restriction enzyme positions.

FIG.

2

C: oligonucleotides used to create the artificial DNA sequence forming the TIR region of pKS90.

FIG.

3

A: primers used in the construction of the Cpβ-mutants.

FIG.

3

B: example of the construction procedure as used for Cpβ M1.

FIG.

4

: Amino acid sequence of

Clostridium perfringens

β-toxin.

FIG.

5

A: graph of the antigenicity titre versus formalin concentration.

FIG.

5

B: graph showing concentration of formalin versus animal death, and that 1% formalin is needed before detoxification is seen.

DETAILED DESCRIPTION OF THE INVENTION

Thus, in one embodiment, the invention relates to detoxified immunogenic derivatives of

Clostridium perfringens

β-toxin or an immunogenic fragment thereof, carrying at least one mutation in its amino acid sequence not found in wild-type β-toxin.

An immunogenic fragment thereof is understood to be a fragment that, although not comprising the full length amino acid sequence of the derivative of the β-toxin, still comprises those regions of the derivative that are capable of inducing a protective immune response in the host animal.

A mutation is understood to be a change in the amino acid sequence of the derivative β-toxin in comparison to the amino acid sequence of the wild-type β-toxin. The mutation is a substitution, deletion, insertion or inversion, or a combination thereof. A mutation can e.g. be such that one or more amino acids of the β-toxin are replaced by other amino acids, with different characteristics. A suitable replacement is e.g. the replacement of a negatively charged amino acid by a positively charged one, such as the replacement of Aspartate by Lysine. Another suitable replacement is that of an aromatic amino acid by an alifatic one: e.g. Tryptophan→Glycine. Also the replacement of a hydrophobic amino acid by a hydrophilic one, such as e.g. Isoleucine by Aspartate is suitable.

Therefore the invention in a preferred form relates to derivatives of β-toxin according to the invention, wherein at least one mutation is a replacement mutation.

It is clear that next to replacement, mutations involving the insertion and/or deletion of one or more amino acids providing non-toxic derivatives of β-toxin still capable of inducing immunological response are also part of the invention. Therefore, in an equally preferred form, the invention relates to derivatives of β-toxin according to the invention, wherein at least one mutation is a deletion or insertion.

When two or more mutations are made, combinations of replacement and deletion/insertion mutations are equally possible.

A derivative of β-toxin is considered non-toxic if its LD50 (lethal dose killing 50% of all animals in an experiment) in mice is at least ten times higher than the LD50 of native β-toxin. The LD50 of native β-toxin is about 0.15 μg/mouse.

As mentioned, it is one of the merits of this invention that, contrary to what was assumed in the art, it was found to be possible to genetically alter the amino acid sequence of the β-toxin such that a non-toxic and still immunogenic toxoid was obtained. Not all mutations will however lead to the desired non-toxic and still immunogenic derivatives of β-toxin. Therefore, a test for rapid screening and selection of mutants producing a non-toxic derivative of β-toxin that is still immunogenic has been developed. This test allows screening of large numbers of mutants producing non-toxic and still immunogenic derivatives of β-toxin. This test will be disclosed below.

It was also found that preferably those regions that form a transition domain between neutral and hydrophilic parts of the β-toxin are suitable as target regions for introducing mutations giving non-toxic derivatives of β-toxin with the desired characteristics. These regions can easily be traced by applying the Hopp-Woods algorithm to the sequence of the β-toxin (Hopp and Woods; Proc. Natl. Acad. Sci. 78: 38248-3828 (1981)). Therefore, in a more preferred form of this embodiment, the invention relates to derivatives of β-toxin having a mutation that is located in a transition domain between neutral and hydrophilic parts of the β-toxin.

Regions that are very suitable as target regions for mutations are located at position 62, at position 182, at position 197, between amino acid numbers 80-103, 145-147, 281-291, 295-299 relative to the peptide leader methionine and the region downstream of the unique cysteine at amino acid position 292.

Therefore, in an even more preferred form, the invention relates to derivatives of β-toxin having a mutation that is located in at least one of the regions at positions 62, 182, 197 and between amino acid numbers 80-103, 145-147, 281-291, 295-299 and/or the region downstream of amino acid position 292 relative to the peptide leader methionine. In a still even more preferred form, the mutations are located at position 62, at positions 80-82, at positions 95-97, at positions 101-103, at positions 145-147, at position 182, at position 197, at positions 287-291, at positions 295-299.

Non-toxic immunogenic derivatives of β-toxin according to the invention can be made by chemically replacing or modifying amino acids in the protein. They can also be made by introducing mutations in the gene encoding the β-toxin. Methods for introducing mutations in DNA fragments are described below. The mutated DNA fragments can then e.g. be cloned in a nucleotide sequence such as a suitable expression plasmid and subsequently be expressed.

Therefore, in another embodiment, the invention relates to nucleotide sequences comprising a mutated DNA fragment that has as a characteristic that it encodes a genetically detoxified immunogenic derivative of

Clostridium perfringens

β-toxin according to the invention or an immunogenic fragment thereof.

As mentioned above, in a preferred form of this embodiment, the invention relates to derivatives of β-toxin having a mutation that is located in a transition domain between neutral and hydrophilic parts of the β-toxin. Such a derivative of β-toxin can be made by expressing a DNA fragment encoding such a derivative of β-toxin. Therefore, in a preferred form the mutated DNA fragment encoding the derivative of β-toxin has a mutation in at least one DNA region encoding a transition domain between neutral and hydrophilic parts of the derivatives of β-toxin.

The detoxified immunogenic derivatives of

Clostridium perfringens

β-toxin according to the invention can e.g. be obtained by means of random mutagenesis of the gene encoding the β-toxin. Many ways of inducing random mutagenesis are known in the art, such as e.g. chemically induced mutagenesis using mutagenising chemical agents, mutagenesis by U.V.-radiation or γ-radiation or random mutagenesis using recombinant DNA technology.

Mutations at the DNA level can also be made at specific sites: site-directed mutagenesis. This is done with the help of known genetic engineering techniques. It is e.g. possible to use restriction enzymes to cut out DNA fragments in or encompassing the target regions, and to replace these fragments by synthetic fragments having a mutated sequence. Site-directed mutagenesis is also a very convenient technique for introducing mutations in the target regions.

If the mutation concerns a replacement mutation, the reading frame will of course remain unaltered. A combination of deletion and/or insertion mutations and replacement mutations is also possible.

The DNA mutation techniques described above are well-known in the art and have been described i.a. in Maniatis, Molecular Cloning, Cold Spring Harbor Laboratory Press, ISBN 0-87969-309-6 (1989).

A suitable bacterial expression system for expressing the derivatives of β-toxin according to the invention is the

Clostridium perfringens

bacterium itself. The native β-toxin gene can easily be replaced by the mutated DNA fragment encoding the derivatives of β-toxin according to the invention using homologous recombination. Homologous recombination is a technique well-known in the art.

The thus obtained recombinant

Clostridium perfringens

bacterium then produces the genetically detoxified immunogenic derivative of

Clostridium perfringens

β-toxin according to the invention.

Therefore, in still another embodiment, the invention relates to

Clostridium perfringens

bacteria comprising a nucleotide sequence with a mutated DNA fragment as described above.

Several additional problems are, however, encountered during the isolation of both toxic and genetically altered non-toxic derivatives of

Clostridium perfringens

β-toxin from

Clostridium perfringens

. First of all, Clostridium is a dangerous bacterium to grow, seen from a workers' health point of view. Growth of Clostridium species for the production of β-toxin must take place under high safety conditions, which makes large scale production difficult. Secondly, as mentioned before, together with the β-toxin several other major/minor toxins are made. Isolation and purification of the β-toxin amongst these other toxins, as is e.g. necessary for vaccine production, is difficult and time-consuming. Thirdly, Clostridium species are spore-forming bacteria. It is necessary but difficult to eliminate all spores from the β-toxin preparation and at the same time retain the immunogenic characteristics of the β-toxin, since these spores are highly resistant against heat and chemicals.

Therefore, there clearly is a need for methods to provide β-toxin free from other Clostddium-toxins and free from Clostridium spores.

Non-Clostridium expression systems based on the Gram negative bacterium

E. coli

for the expression of Clostridium β-toxin have been described before.

E. coli

systems have been used by Hunter et al. (Infect. & Immun. 61: 3958-3965 (1993)) for the expression of the β-toxin gene. Only a minor band corresponding to the expected 34 kD protein was found whereas by far most of the β-toxin protein was found in large 118 kD multimeric forms. Steinporsdottir et al. (FEMS Microbiology Letters 130: 273-278 (1995)) tried to express the β-toxin gene in

E. coli

as a fusion protein fused to gluthatione S-transferase. They also, like Hunter, found only high molecular weight non-natural β-toxin. It was concluded in this paper that the protein produced in

E. coli

had a conformation different from the native β-toxin. It therefore seems likely that other Clostridium-encoded proteins play an additional role in the conformational folding and excretion of the native β-toxin. This is known to be the case for many other excreted bacterial proteins. For this reason, since as mentioned above there is a delicate balance between structure and immunogenicity, β-toxin obtained from sources other than

Clostridium perfringens

and thus in a non-native form cannot be expected to be an efficient basis for a vaccine, regardless the expression system used.

It was surprisingly found now that expression of the native β-toxin gene in Gram positive bacteria other than

Clostridium perfringens

provides a native β-toxin with all the biological and biophysical characteristics and activities of the native β-toxin as produced in

Clostridium perfringens

, but having several highly desirable advantages over the β-toxin produced in

Clostridium perfringens

or

E. coli

: a) it is not contaminated with

Clostridium perfringens

spores, b) it is produced free of contaminating lipopolysaccharides, c) it is produced free of other major/minor Clostddium toxins and d) it is in it's native conformation. A thus obtained β-toxin can be inactivated with formalin more advantageously than the β-toxin obtained from Clostridium, since the only biological material to be taken into consideration during inactivation is the β-toxin itself: spores, lipopolysaccharides and other major/minor Clostridium toxins need not be taken care of, since they are absent per se.

Therefore, in still another embodiment, the invention relates to a Gram positive bacterial expression systems wherein the Gram positive bacterium is not

Clostridium perfringens

, the said expression system comprising the gene encoding wild-type

Clostridium perfringens

β-toxin.

The β-toxin gene can be under the control of its native promotor. It may also be placed under the control of a heterologous promotor. Such a promotor can be e.g. the Lac-promotor (Chang et al., Nature 275: 615 (1978)) or the Trp-promotor (Goeddel et al., N.A.R. 8: 4057 (1980)). Such a promotor may be a strong promotor, leading to over-expression of the β-toxin, or it may be an inducible promotor. Both kinds of promoters are known in the art.

Several expression systems for Gram positive bacteria have been described, and versatile expression plasmids for use in several families of Gram positive bacteria are known in the art. As an example may serve expression systems based upon the Enterococcal broad Gram positive host range replicon of pAMβ1 described by Simon and Chopin (Biochimie 70: 559-567 (1988)). Derivatives of this plasmid can be used for expression of foreign genes in e.g. Streptococcus, Lactobacillus, and Bacillus species.

Within the group of non-Clostridium Gram positive bacteria, those bacteria of which the genome has a relatively high AT-content are most suitable for cloning and expression of genes from the genus Clostridium. Therefore, in a more preferred form, the Gram positive bacterium used for the preparation of the native β-toxin or the derivative of β-toxin according to the present invention is selected from the group of Lactococcus, Lactobacillus, Leuconostoc, Pediococcus, Streptococcus, Enterococcus, Staphylococcus, Bacillus, Sarcina, Ruminococcus or Listeria.

It is of course even more advantageous to express a mutated β-toxin gene according to the invention in a Gram positive bacterium other than Clostridium: in that case the detoxification treatment with formalin can be completely omitted. The so-obtained non-toxic derivative of β-toxin has, next to being free from spores, free from lipopolysaccharides, free of other major/minor Clostridium toxins and being in a native form, the additional advantage that it is non-toxic per se.

Therefore, in a more preferred form, the invention relates to a Gram positive bacterial expression system, said Gram positive bacterium not being

Clostridium perfringens

, comprising a nucleotide sequence encoding a derivative β-toxin gene according to the invention or an immunogenic fragment thereof.

Still another embodiment of the present invention relates to vaccines for combating

Clostridium perfringens

infections, based upon genetically detoxified immunogenic derivatives of

Clostridium perfringens

β-toxin. Such vaccines can be made e.g. by admixing an immunologically sufficient amount of detoxified immunogenic derivatives of

Clostridium perfringens

β-toxin according to the invention and a physiologically acceptable carrier. An immunologically sufficient amount is understood to be the amount of detoxified immunogenic

Clostridium perfringens

β-toxin that is capable of inducing a protective immune response in a host animal.

Thus still another embodiment of the invention relates to vaccines for combating

Clostdidium perfringens

infection that comprise a derivative of

Clostridium perfringens

β-toxoid according to the invention or an immunogenic fragment thereof, and a physiologically acceptable carrier.

A physiologically acceptable carrier is e.g. water or a physiological salt solution. Often the vaccine is additionally mixed with stabilisers, e.g. to protect degradation-prone polypeptides from being degraded, to enhance the shelf-life of the vaccine, or to improve freeze-drying efficiency. Useful stabilisers are i.a. SPGA (Bovarnik et al; J. Bacteriology 59: 509 (1950)), carbohydrates e.g. sorbitol, mannitol, trehalose, starch, sucrose, dextran or glucose, proteins such as albumin or casein or degradation products thereof, and buffers, such as alkali metal phosphates. It goes without saying that other ways to stabilise the vaccine by adding compounds are also embodied in the present invention.

Optionally, one or more compounds having adjuvant activity may be added to the vaccine. Adjuvantia are non-specific stimulators of the immune system. They enhance the immune response of the host to the administered immunogens. Therefore, in a more preferred form, the vaccines according to the present invention comprise an adjuvant. Examples of adjuvantia known in the art are Freunds Complete and Incomplete adjuvants, vitamin E, non-ionic block polymers, muramyldipeptides, ISCOMs (immune stimulating complexes, cf. for instance European Patent EP 109942), Saponins, mineral oil, vegetable oil, and Carbopol (a homopolymer).

Adjuvantia, specially suitable for mucosal application are e.g. the

E. coli

heat-labile toxin (LT) or Cholera toxin (CT).

Other suitable adjuvants are for example aluminium hydroxide, phosphate or oxide, oil-emulsions (e.g. of BAYOL F or MARCOL 52, saponins or vitamin-E solubilisate.

The vaccine according to the present invention can be kept in storage using methods known in the art for storing live vaccines. Storage can e.g. be done at sub-zero temperature.

Freeze-drying also is a known and suitable method for the conservation of vaccines. Freeze-drying has the advantage that it stabilises the vaccine so that it can be kept in stock at temperatures well above those necessary to keep non-freeze-dried stocks. The vaccine according to the present invention can be freeze-dried very efficiently, especially when it is mixed with stabilisers such as those mentioned above before freeze-drying.

The vaccine can be administered to all hosts sensitive to

Clostridium perfringens

type B or C infection, such as man, lamb, sheep, goat, pig, bird and calf.

The vaccine can be administered as early as day of birth, but can also be given at any later stage.

Vaccine doses are preferably between 1 and 100 μg of the derivative per animal, depending partially on the size of the animal. For e.g. pigs, a very suitable dosis ranges between 20 and 80 μg.

Although in principle all common routes of administration can be used, the vaccine is preferably administered intraperitoneally, intranasally, intramuscularly, subcutaneously, orally or intradermally.

Still another embodiment of the invention relates to an alternative way of making a vaccine for combating

Clostridium perfringens

infections. Attenuated or non-pathogenic live bacteria and viruses having a

Clostridium perfringens

type B or C sensitive human or animal as a host, can be used as carriers of the mutated β-toxin gene according to the invention as described above. These so-called live recombinant carrier vaccines can be safely administrated to the host-animal together with a physiologically acceptable carrier; they behave non-pathogenically and they express a non-toxic derivative of the β-toxin. The live recombinant carrier-based vaccines have the advantage that they produce and or present derivatives of the

Clostridium perfringens

β-toxin directly in the host. Animals vaccinated with such a recombinant bacterium or virus will produce an immunogenic response not only against the immunogens of the vector, but also against the immunogenic parts of the polypeptide(s) for which the genetic code is additionally cloned into the recombinant carrier. This has the advantage that by administrating such a recombinant carrier protection against two or more diseases can be obtained.

Many live recombinant carrier viruses and bacteria are currently known in the art. Suitable live recombinant carrier bacteria are e.g. Salmonella species and

E. coil

species. Viruses frequently used in the art as live recombinant carriers are adenoviruses, retroviruses, vaccinia viruses and herpesviruses. Also suitable as a specific orally applicable carrier virus is Porcine Parvovirus. Another virus that is useful as a live recombinant carrier virus for carrying the gene encoding the β-toxoid is the herpesvirus, Pseudorabies virus (PRV) (e.g. as described in European Pat. No. 606.437). Such a PRV carrying the β-toxoid gene would protect pigs against infection with both PRV and

Clostridium perfringens

type C.

Thus, vaccines for combating

Clostridium perfringens

infection that comprise a live recombinant carrier organism carrying the mutated β-toxin gene according to the invention are therefore also part of the invention.

It is clear that the native β-toxin is an important, if not the most important virulence factor in

Clostridium perfringens

. Therefore, a Clostridium strain in which the native β-toxin gene is replaced by a mutant β-toxin gene according to the invention as described above has therefore lost an important virulence factor. Such a strain can be used as a live attenuated vaccine, since the β-toxin is not made in its toxic form but in the form of a non-toxic derivative. The advantage of such a live attenuated vaccine is that it produces a non-toxic but still immunogenic form of the β-toxin, whereas it has in addition all the other immunogenic antigens of the native

Clostridium perfringens

strain.

Therefore, vaccines comprising a live attenuated

Clostridium perfringens

strain in which the native β-toxin gene is replaced by a mutated β-toxin gene according to the invention are also included in this invention.

Also embodied in the invention are vaccines that comprise, in addition to a β-toxin derivative according to the invention, immunogens from other pathogens. This allows one to vaccinate against various diseases in one vaccine administration step.

In a more preferred form of this embodiment, the vaccine according to the present invention comprises additional immunogens, selected from the group consisting of

Actinobacillus pleuropneumoniae

, Pseudorabies virus, Porcine Influenza virus, Porcine Parvovirus, Transmissible Gastroenteritisvirus, rotavirus,

Escherichia coli, Erysipelothrix rhusiopathiae, Pasteurella multocida, Bordetella bronchiseptica

, Salmonella species,

Mycoplasma hyopneumoniae, Haemophilus parasuis

and Helicobacter-like bacteria.

The present invention also relates to methods for the preparation of native

Clostridium perfringens

β-toxin, which methods are based upon the expression of a nucleotide sequence comprising a DNA fragment encoding said β-toxin in Gram positive bacteria other than

Clostridium perfringens.

Furthermore, the invention presents methods for the preparation of non-toxic derivatives of

Clostridium perfringens

β-toxin according to the invention. These methods are based upon the expression of nucleotide sequences comprising a DNA fragment encoding a derivative of β-toxin, in a Gram positive bacterium.

Also, the invention provides methods for the preparation of a vaccine for combating

Clostridium perfringens

infection. Such methods e.g. comprise admixing a derivative of

Clostridium perfringens

β-toxin according to the invention and a physiologically acceptable carrier.

EXAMPLE 1

Construction of Expression Plasmids pKS90, pTREX1A, pTREX7 and pTREX14

The pKS90 plasmid is a high-copy number (40-80 per cell) theta-replicating gram positive plasmid based on the pTREX1 plasmid, which is itself a derivative of the previously published plL253 plasmid. plL253 incorporates the broad Gram-positive host range replicon of pAMb1 (Simon, D., and A. Chopin. 1988. Construction of a vector plasmid family and its use for molecular cloning in

Streptococcus lactis

. Biochimie. 70: 59-567.) and is non-mobilisable by the

L. lactis

sex-factor. plL253 also lacks the tra function which is necessary for transfer or efficient mobilisation by conjugative parent plasmids exemplified by plL501. The Enterococcal pAMb1 replicon has previously been transferred to various species including Streptococcus, Lactobacillus and Bacillus species as well as

Clostridium acetobutylicum

, (Gibson, E. M., N. M. Chace, S. B. London and J. London. 1979. J. Bacteriol. 137: 614619. LeBlanc, D. J., R. J. Hawley, L. N. Lee and E. J. St. Martin. 1978. Proc. Natl. Acad. Sci. USA. 75:3484-3487. Oultram, J. D., and M. Young. 1985. FEMS Micro. Lett. 27: 129-134.) indicating the potential broad host range utility. While pTREX1 (and pTREX1A) represents a basic constitutive transcription vector, the derivative pKS90 utilises translational coupling to a lactococcal translational initiation region in order to increase expression level. Construction details of pKS90 and its immediate parent pTREX1 are given below.

pTREX1

An artificial DNA fragment containing a putative RNA stabilising sequence, a translation initiation region (TIR), a multiple cloning site for insertion of the target genes and a transcription terminator was created by annealing 2 complementary oligonucleotides and extending with Tfl DNA polymerase. The sense and antisense oligonucleotides contained the recognition sites for NheI and BamHI at their 5′ ends respectively to facilitate cloning. This fragment was cloned between the XbaI and BamHI sites in pUC19NT7, a derivative of pUC19 which contains the T7 expression cassette from pLET1 (Wells, J. M., P. W. Wilson and R. W. F. Le Page. 1993. J. Appl. Bact. 74:629-636.) cloned between the EcoRI and HindIII sites. The resulting construct was designated pUCLEX. The complete expression cassette of pUCLEX was then removed by cutting with HindIII and blunting followed by cutting with EcoRI before cloning into EcoRI and SacI (blunted) sites of plL253 to generate the vector pTREX. The putative RNA stabilising sequence and TIR are derived from the

Escherichia coli

T7 bacteriophage sequence and modified at one nucleotide position to enhance the complementarity of the Shine Dalgarno (SD) motif to the ribosomal 16s RNA of

Lactococcus lactis

. A

Lactococcus lactis

MG1363 chromosomal promoter designated P1 was cloned between the EcoRI and BgIII sites present in the expression cassette, creating pTREX1. This promoter had been previously isolated using the promoter probe vector pSB292 and characterised by primer extension and DNA sequencing analysis (Nick. R. Waterfield, R. W. F. Le Page, P. W. Wilson, and J. M. Wells. Gene. 165.1995. 9-15.). The promoter fragment was amplified by PCR using the Vent DNA polymerase. The PCR fragment included all of the DNA sequence upstream of the cloned promoter and up to 15 bases 3′ to the transcription start site. The Shine-Dalgarno (SD) sequence present downstream of the transcription start site of this promoter was deliberately excluded from the PCR amplified promoter fragment to prevent translation initiation at sites other than the start codon indicated in the expression cassette. Two similar vectors designated pTREX7 and pTREX14 have also been created using the weaker P7 and P14 promoters, cloned between the EcoRI and BgIII sites in place of P1. The PCR primers used to create these promoter fragments are illustrated in

FIG. 1.

d

. The pTREX1A plasmid represents an alternative to pTREX1, in which the XbaI bounded expression cassette is replaced by a XbaI-SpeI T7-expression cassette fragment from pET3A. The SD sequence is therefore not optimised for Lactococcus. The complete pTREX1A sequence and schematics illustrating the expression cassette are illustrated in FIG.

1

.

pKS90

The pKS90 plasmid is a derivative of pTREX1, which while utilising the same transcription promoter P1, has a modified TIR containing the SD and first 20 codons of a lactococcal chromosomally derived resolvase gene, P11, (Nick. R. Waterfield, R. W. F. Le Page, P. W. Wilson, and J. M. Wells. Gene. 165. 1995. 9-15.). This was achieved by cloning an artificial DNA sequence, containing the new TIR, between the BgIII and BamHI sites of pTREX1. The oligonucleotide sequences used in this procedure are presented in FIG.

2

. Through the careful choice of PCR primer sequence, a PCR derived target gene can be translationally coupled to this TIR, which has been shown to increase expression level when compared to that obtained from the pTREX1 parent plasmid. The complete pKS90 sequence and a schematic illustrating the expression cassette are illustrated in FIG.

2

.

Construction of Recombinant Strains of

Lactococcus lactis

Which Secrete Active Beta Toxin

The pJF2000 DNA (as supplied by J. Frey, Institute for veterinary bacteriology, University of Berne, CH-3012 Berne, Switzerland) comprising a gene encoding the β-toxin as published by Hunter et al. (Infect. & Immun. 61: 3958-3965 (1993)) was electroporated into

E. coli

SURE. Plasmid DNA from six independent transformants was isolated, examined by restriction digest and pooled. These strains were stored at −70C in 15% glycerol. The cpb gene with associated translation initiation region (and upstream RNA stabilising stem-loop) was excised from this pooled preparation of plasmid DNA by digestion with BbaI/BamHI or SmaI/BamHI. The purified cpb gene fragments were ligated into the multiple cloning sites of the expression vectors pTREX1A, pTREX14 and pTREX7, which direct high, medium and low levels of constitutive expression respectively. BbaI/BamHI ended cpb fragments were ligated into BbaI/BamHI digested pTREX1ANEW while the SmaI/BamHI ended cpb fragment was ligated into BamHI/BgIII (blunted) pTREX14 and pTREX7 DNA. These constructs were successfully electroporated into the specially disabled strain

Lactococcus lactis

pep5- acmA-, which lacks a chromosomally encoded peptidase, pep5, which enables the organism to utilise peptides liberated from casein. In addition it also lacks a cell wall associated autolysin, acmA. Any other

Lactococcus lactis

strain is however suitable for this purpose. Ten correct isolates of each type were identified using restriction digest analysis and have been stored at −70C in 15% glycerol. These strain types are designated

L. lactis

pep5- acmA- [pTREX1Acpb],

L. lactis

pep5- acmA- [pTREX14cpb] and

L. lactis

pep5-acmA- [pTREX7cpb]. In addition, the cpb gene was amplified by PCR using Vent DNA polymerase and BamHI ended oligonucleotides from plasmid pJF2000. This PCR product was cloned into the BamHI site of the TIR coupling vector pKS90.

Total protein extracted from mid-log cells and supernatant was resolved using SDS-PAGE before transferring to nitrocellulose filters. These filters were probed with both monoclonal and polyclonal antibodies to Cpb, using MAB (monoclonal antibody) purified beta-toxin as a control. A single protein product of the correct size (approximately 30 kDA) was detected in the culture supernatants from all four strains, by western blot and Coomasie Blue staining of SDS gels. The amount of beta toxin secreted by each strain was consistent with the relative strengths of the promoters in the expression vectors used. No intracellular toxin could be detected, suggesting that the clostridial export sequence functions efficiently in Lactococcus. Filtered supernantants from the pTREX1A expressor,

L. lactis

MG1363 pep5- acmA- [p3-1/5], and the pKS90 expressor

L. lactis

MG1363 pep5- acmA- [p5-123], were shown to contain active toxin, providing a positive control for the recombinant beta-toxin.

The cpb Mutant Genes

Mutant cpb genes were created by in vitro gene construction using PCR fragments amplified by Vent DNA polymerase from the original template cpb gene (cloned from

C. perfringens

type C) present in plasmid pJF2000 (as supplied by J. Frey). Primers used in this construction, and an example of the construction procedure used, are given in FIG.

3

. The inclusion of BamHI sites on the 5′ ends of the terminal cpbF2 and cpbR PCR primers allowed these mutants to be cloned into the BamHI site of the pKS90 expression plasmid (see above). The choice of PCR primers incorporating a BamHI site suitably spaced to the cpb ATG start codon, allowed the mutant cpb genes to be translationally coupled to the P11 TIR in pKS90. This method was used to generate a series of mutant expression strains. The exact sequences of these mutant genes (after cloning into pKS90) were determined by automatic sequencing with 3-4 fold redundancy, which confirmed both the gene sequences and location in the expression plasmids. Cloning the mutant genes in these vectors allowed secretion of the gene product into the culture supernatant by virtue of the native cpb N-terminal export leader. The culture supernatant was filter-sterilised and used directly in animal bioassays.

TABLE 1

mutant gene constructs.

Construct

Mutation

pM1-4

D

80

DK → A

80

AA

pM1-10

D

80

DK → A

80

AA

Y

182

→ H

182

pM2

T

95

GF → D

95

DD

pM3-3

K

101

KE → A

101

AA

T

197

→ A

197

pM3-69

K

101

KE → A

101

AA

pM4-3

P

145

KN → D

145

ED

pM4-18

V

62

→ I

62

P

145

KN → D

145

ED

pM6-1

C

292

→ A

292

(pM6-5)

(pM6-7)

pM6-16

C

292

→ A

292

Δ

+

292

NWNGA

pM7-15

E

287

RER → Q

287

QQQ

Mutant Expression Strains

The pKS90-based toxoid expression plasmids are propagated in the specially disabled Lactococcal host strain,

L. lactis

MG1363 pep5- acmA-, but other Lactococcus strains can also be used. This strain represents a prophage and plasmid cured strain that is highly auxotrophic and unable to survive in the natural milk environment. In addition it grows at a slower rate than other lactococcal strains.

Non-toxic expression strains constructed as indicated above are represented in table 1. In this table, it is indicated which amino acids were mutated and where the mutations are located.

The toxoid expression strains can be grown in M17 medium (Difco cat. number 1856-17) supplemented with 0.5% w/v glucose and 5 g/ml erythromycin. Aeration is not required, indeed anoxic conditions are preferred although not essential. Optimal growth temperature is 30C. The various toxoid proteins produced by all these strains have been shown to accumulate in the culture medium to levels less than 5 g/ml. Western blot analysis using both monoclonal and polyclonal antibodies confirmed that protein monomer of the correct size is secreted into the supernatant by all the named expressor strains listed above. N-terminal sequencing of an example mutant protein, M4(4-3), confirmed that the leader peptide is correctly cleaved during export from the lactococcal cytoplasm.

Protocol for Random Mutagenesis of the cpb Gene

Typical PCR Reaction Mix is Set Up as Follows:

10 mM Tris-HCl (pH 8.7 at 25° C.)

50 mM KCl, 5 μg/ml bovine serum albumin

0.5 μM of each of the PCR primers

(cpbf2: 5′-ggaggatccaaatgaagaaaaaatttatttcattagttatag-3′) (SEQ ID NO: 3)

(cpbR: 5′-atggatccgtctaaatagctgttactttgtgag-3′) (SEQ ID NO: 4)

4 mM MgCl

2

0.5 mM MnCl

2

3.4 mM forcing dNTP and 0.2 mM other 3 dNTPs (dNTP concentration may be ranged between 0.1 and 10 mM)

600 pM of template DNA (pJF2000 cpb clone or other cpb derivative) 2U Taq DNA polymerase

Thermocycle Conditions Were as Follows:

(94° C. for 30 seconds, 50° C. for 60 second, 72° C. for 180 seconds) 30 cycles, followed by incubation at 72° C. for 600 seconds.

This reaction was performed using each of the 4 dNTPs as the forcing nucleotide and then pooled. This gives a suitably random mix of substitutions. The pooled PCR fragments were then BamHI digested and ligated into BamHI digested pKS90. This ligation mix was transformed into

Lactococus lactis

MG1 363. Transformants were grown in liquid culture and the filtered supernatants tested in the in vitro beta-toxin assay described in Example 3.

EXAMPLE 2

Culture of

Lactococcus lactis

L. lactis

producing gene modified β-toxin was grown in M17 medium (e.g. Difco cat. 1856-17), supplemented with 0.5% w/v glucose and 5 μg/ml erythromycin. Airation is not required, anoxic conditions are preferable although not essential. Optimal growth temperature is 30° C. Addition of glucose is necessary during the exponential growth.

Antigen Preparations

The culture supernatant was separated from the cells by means of centrifugation. After sterile filtration of the supernatant the derivatives were precipitated with ammonium sulphate (0.3 g/g). The precipitate was resuspended in PBS. As an alternative the culture supernatant can be concentrated on a filter <10,000 Da.

Mouse Lethality

Derivatives of β-toxin produced in

L. lactis

were initially tested by injection of sterile filtered culture supernatant, intraperitoneally, 0.5 ml in NRMI mice weighing approx. 20 g. Derivatives pM 6-1, 6-5, and 6-7 were lethal at a level similar to that of the native toxin. The derivatives pM 6-1, 6-5, and 6-7 have been modified in amino acid pos. Cys

292

→Ala

292

.

TABLE 2

Mouse lethality test

dead/total (approx. in μg/ml)

sterile filtered

(NH

4

)

2

SO

4

conc.

Derivative

supernatant

supernatant

pM 1-4

0/5 (5 μg/ml)

2/2 (20 μg/ml)

pM 1-10

0/5 (5 μg/ml)

2/2 (20 μg/ml)

pM 2

0/5 (1 μg/ml)

1/2 (˜4 μg/ml)

pM 3-3

0/5 (5 μg/ml)

1/2 (30 μg/ml)

pM 3-64

0/5 (5 μg/ml)

2/2 (30 μg/ml)

pM 4-3

0/5 (5 μg/ml)

1/2 (30 μg/ml)

pM 4-18

0/5 (1.5 μg/ml)

0/2 (30 μg/ml)

pM 6-1

5/5 (0.5 μg/ml)

2/2 (50 μg/ml)

pM 6-5

5/5 (0.5 μg/ml)

2/2 (50 μg/ml)

pM 6-7

5/5 (5 μg/ml)

2/2 (50 μg/ml)

pM 6-16

0/5 (5 μg/ml)

0/2 (50 μg/ml)

pM 7-15

0/5 (5 μg/ml)

2/2 (40 μg/ml)

In subsequent experiments the supernatants containing derivatives were precipitated with ammonium sulphate. Each derivative-containing sediment was resuspended in PBS in a 10× smaller volume. Each derivative was injected intraperitoneally mice. The derivatives pM 1-4, pM 1-10, pM 3-69 and pM 7-15 are all non-toxic at levels at which the wild-type toxin is lethal. They only become toxic at very high concentrations: 20-40 μg/ml. The derivatives pM 4-18 and pM 6-16 are also non-toxic at levels at which the wild-type toxin is lethal. They are not even toxic at even higher concentrations: 30-50 μg/ml. The remaining 3 derivatives pM 2, pM 3-3 and pM 4-3 were slightly toxic. (The LD

50

of the wild-type toxin is 0.15 μg/mouse). See also Table 2.

Dermonecrosis in Guinea Pigs

Albino guinea pigs of own breed, 300 g, were depilated in an area of 4×8 cm on both sides. 0.2 ml of extract was injected intradermally at 4 sites on each side of the animal. The animals were examined after 24, 48 and 72 hours and the lesion at the injection sites was scored. Obvious necrosis at the injection site (++++), severe erythema (+++), erythema (+++), reddening (+), no reaction (0).

The derivatives pM 1-4, 1-10, 3-3, 4-3, 6-16 and 7-15 are non-dermonecrotic even at very high concentrations.

The derivatives pM 6-1, 6-5, and 6-7 were dermonecrotic at a level of 5 μg/ml. They were not dermonecrotic at 0.5 μg/ml. After concentration the derivative pM 3-69 turned out to be dermonecrotic in dosages of 6 μg/ml, which corresponds to at least 60× less dermonecrotic than the native toxin. Derivative pM 4-18 has a 15× less dermonecrotic potential than that of the native toxin. Derivative pM 2 has not shown any dermonecrotic action by the tested concentrations of 1 μg/ml and 2 μg/ml respectively. Therefore pM2 is at least 20× less toxic than the native toxin. See also Table 3.

Vaccine Preparation

The antigen preparations were adjuvanted with Freund's incomplete adjuvant (50%), or Alhydrogen (20%), respectively.

TABLE 3

dermonecrosis in pigs.

Sterile filtered

(NH

4

)

2

SO

4

concentr.

Derivative

supernatant

supernatant

1-4

0

(5 μg/ml)

0

(10 μg/ml

0

(4 μg/ml)

1-10

0

(5 μg/ml)

0

(10 μg/ml)

0

(4 μg/ml)

2

0

(1 μg/ml)

0

(2 μg/ml)

(+)

(1 μg/ml)

3-3

0

(5 μg/ml)

0

(15 μg/ml)

0

(6 μg/ml)

3-69

0

(5 μg/ml)

+++

(15 μg/ml)

++

(6 μg/ml)

4-3

0

(5 μg/ml)

0

(5 μg/ml)

0

(5 μg/ml)

4-18

0

(1.5 μg/ml)

(+)

(15 μg/ml)

0

(6 μg/ml)

6-1

++++

(5 μg/ml)

n.d.

0

(0.5 μg/ml)

6-5

++++

(5 μg/ml)

n.d.

0

(0.5 μg/ml)

6-7

++++

(5 μg/ml

++++

(10 μg/ml)

++

(2.5 μg/ml)

6-16

0

(0.5 μg/ml)

0

(25 μg/ml)

0

(20 μg/ml)

7-15

0

(5 μg/ml)

0

(20 μg/ml)

0

(5 μg/ml)

0

(8 μg/ml)

CpC β

+++

(0.1 μg/ml)

0 no reaction

+ reddening

++ erythema

+++ severe erythema

++++ obvious necrosis at injection site

CpC β Clostridium perfringens type C β-toxin

Immunization of Pigs

The derivative 3-69 was prepared in a concentration of approx. 40 μg/ml and adjuvanted to a final concentration of 20 μg/ml. The pigs were given 2 ml intramuscularly at 2 weeks interval. Blood samples were taken before 1st vaccination, before 2nd vaccination and 2 weeks after 2nd vaccination. The pigs were observed for side effects 24 h after 1st vaccination. No side effects were observed.

EXAMPLE 3

Quick Screening Test for the Detection of Non-toxic Derivatives of β-toxin Obtained from Randomly Mutagenised β-toxin-genes

Procedure for BT-cell Test

A culture of trypsinated BT (Bovine Turbinate cells) cells, 1.5×10

5

cells/ml, in Eagles medium with 5% calf serum, was transferred to a 96-wells microtiter plate, 100 μl/well. The plates were incubated for 24 hours at 37° C. and 3% CO

2

. Samples of β-toxin to be tested were diluted in 20° C. PBS pH 7.0 in dilution plates. The medium was cautiously discarded from the cells and 100 μl of β-toxin dilutions were applied per well. The cells were then incubated for 30 min. at 37° C. and 3% CO

2

. The samples were cautiously discarded and fresh Eagles medium with 5% calf serum tempered to 37° C. was added. The cells were incubated for three days under the same conditions as mentioned above. Then the medium was discarded from the microtiter plates and Giemsa staining solution 5 μl/well was added. After 10 minutes the staining agent was discarded and the plate was washed 3× with water and allowed to stand for at least 20 minutes for drying.

All wells were checked for the presence of multinucleate cells and irregularities in the monolayer. Lack of these signs in a specific well is indicative for the presence in that well of a non-toxic derivative β-toxin. Those β-toxin derivatives that proved non-toxic were tested for their immunogenicity in the semi-quantitative ELISA test described below.

Semi-quantitative ELISA

Highly specific antibodies raised against native

Clostridium perfringens

β-toxin in rabbits were purified on a protein A column and ELISA plates were coated with approximately 2 μg/ml of these specific antibodies. The supernatants containing the β-toxin derivatives were added to the plates in 3-fold dilutions. After incubation for 1 hour, horseradish peroxidase conjugated polyclonal rabbit anti-C.p.β-toxin antibodies were used for detection.

Those β-toxin derivatives that reacted in the ELISA to a titer not less than 1000 times lower than the native β-toxin were considered to be the desired non-toxic and still immunogenic derivatives of β-toxin according to the invention.

EXAMPLE 4

Vaccination Experiments in Pigs

Preparation of Vaccine

Derivative pM 1-4 was produced by Lactococcus lactis strain pM 1-4. After fermentation the cells were removed by centrifugation (100000×g for 35 min.). Then, 0.31 g ammonium sulphate was added to each g of supernatant. The mixture was placed at 4° C. for 3 hours for precipitation. After centrifugation at 100000×g for 45 min. the precipitate was dissolved in 1/30 of the original volume and dialysed against PBS. The final content of derivative pM 1-4 was quantified by SDS-PAGE relative to BSA standards. Finally the derivative solution was mixed with Diluvac

Forte® in a ratio of 1:1. The final concentration of pM 1-4 in the vaccine was 80 μg/ml.

Vaccination

Five pigs aged 5 weeks were used. The pigs were vaccinated with 2 ml intramuscularly on days 0 and 21.

Observations

The animals' general condition was recorded during the initial three hours after vaccination according to the following scale:

0=no symptoms

1=mildly depressed, rough coated (for less than 1 hour)

2=depressed, shivering (less than 1 hour)

3=depressed, shivering, lying down and limited water intake (less than 1 hour)

4=vomiting, severely depressed (less than 1 hour)

5=depressed for more than one hour and does not eat the following feeding

Blood Sampling and Determination of Titers

Blood samples were taken before 1

st

vaccination (day 0), before 2

nd

vaccination (day 21) and two weeks after 2

nd

vaccination (day 35) and analysed for anti-β-toxin antibodies by competitive ELISA. Briefly described, monoclonal antibody raised against native β-toxin was coated in an ELISA plate. Serial dilution of sera was allowed to react with a fixed concentration of the β-toxin on a separate plate. The mixtures of toxin and antibodies containing sera were transferred to the Mab coated plate and remaining native β-toxin contents were determined. The titres were calculated as 50% inhibition of uninhibited β-toxin, relative to WHO antitoxin standard 1959.

Results

Observations

The pigs did not show any clinical reaction due to any of the vaccinations. See table 4.

Serology

One pig (no. 52) responded to 1

st

vaccination. After the second vaccination all four pigs seroconverted and the average anti-β-toxin titer was 66 i.u. measured in ELISA. Individual titers appear from Table 4.

TABLE 4

Anti-β-toxin antibody response in pigs

Anti-β-toxin antibody response in pigs measured in ELISA in i.u.

and score in test for non-specific toxicity.

Pre-immune

After 1

st

After 2

nd

Non-spec.

sera

vaccination

vaccination

tox

Pig No.

(i.u.)

(i.u.)

(i.u.)

score

51

0

0

159.6

0

52

0

2.4

55.1

0

54

0

0

32.2

0

55

0

0

17.3

0

Conclusion

All pigs responded to vaccination with genetically modified β-toxin by producing β-toxin-inhibiting anti-β-toxin antibodies.

29

1

60

DNA

Clostridium perfringens

1
gaagatctga tcatttggat cctccttgag ttgaaactcg tgcgtatcct attttcattt 60

2

38

DNA

Clostridium perfringens

2
ggaggatcca aatgaatgat ataggtaaaa ctactact 38

3

42

DNA

Clostridium perfringens

3
ggaggatcca aatgaagaaa aaatttattt cattagttat ag 42

4

33

DNA

Clostridium perfringens

4
atggatccgt ctaaatagct gttactttgt gag 33

5

64

DNA

Clostridium perfringens

5
gctagttttt gttgtaattt gttatttggg aattttattt tgggtattgg tagtcgagat 60
ttta 64

6

27

DNA

Clostridium perfringens

6
agatgaatat gcagcagcga taaatct 27

7

24

DNA

Clostridium perfringens

7
gaaatgacaa ctttaataaa ctta 24

8

27

DNA

Clostridium perfringens

8
tgaagacata tcatcatcta agtttat 27

9

27

DNA

Clostridium perfringens

9
aaaaaagaag atgttataaa aaaatac 27

10

27

DNA

Clostridium perfringens

10
atctgctgct gctgaagaca taaatcc 27

11

24

DNA

Clostridium perfringens

11
gttataaaaa aatacaattt gcat 24

12

27

DNA

Clostridium perfringens

12
agaaattgta tcttcatcaa tactatc 27

13

24

DNA

Clostridium perfringens

13
caaaaaactg tatccaatac aatg 24

14

24

DNA

Clostridium perfringens

14
ttatacattt ggggtatcaa aagc 24

15

21

DNA

Clostridium perfringens

15
ataataagcg tttctttcac g 21

16

24

DNA

Clostridium perfringens

16
cttaattgga atggtgctaa ctgg 24

17

27

DNA

Clostridium perfringens

17
acagttttgt tgctgctgca ttttaac 27

18

24

DNA

Clostridium perfringens

18
tattatctta attggaatgg tgct 24

19

29

DNA

Clostridium perfringens

19
gaagatctct agctttgagc tgtaataga 29

20

33

DNA

Clostridium perfringens

20
cggaattcag ttgaactact ttttttagtt tta 33

21

33

DNA

Clostridium perfringens

21
gaagatctga tacttgtatt ataacatatc tac 33

22

30

DNA

Clostridium perfringens

22
cggaattcga ttaagtcatc ttacctcttt 30

23

31

DNA

Clostridium perfringens

23
gaagatctgt aatgtttcgc aactctacta t 31

24

32

DNA

Clostridium perfringens

24
cggaattcag gactaattga tgaaactttt ct 32

25

5217

DNA

Clostridium perfringens

25
gaattcgatt aagtcatctt acctctttta ttagtttttt cttataatct aatgataaca 60
tttttataat taatctataa accatatccc tctttggaat caaaatttat tatctactcc 120
tttgtagata tgttataata caagtatcag atctttaaaa tgaaggagaa aaaaatgaaa 180
ataggatacg cacgagtttc aactcaagga ggatccaaat gatcagatcc ggctgctaac 240
aaagcccgaa aggaagctga gttggctgct gccaccgctg agcaataact agcataaccc 300
cttggggcct ctaaacgggt cttgaggggt tttttgctga aaggaggaac tatatccgga 360
tgacctgcag gcaagctcta gaatcgatac gattttgaag tggcaacaga taaaaaaaag 420
cagtttaaaa ttgttgctga acttttaaaa caagcaaata caatcattgt cgcaacagat 480
agcgacagag aaggcgaaaa cattgcctgg tcgatcattc ataaagcaaa tgccttttct 540
aaagataaaa cgtataaaag actatggatc aatagtttag aaaaagatgt gatccgtagc 600
ggttttcaaa atttgcaacc aggaatgaat tactatccct tttatcaaga agcgcaaaag 660
aaaaacgaaa tgatacacca atcagtgcaa aaaaagatat aatgggagat aagacggttc 720
gtgttcgtgc tgacttgcac catatcataa aaatcgaaac agcaaagaat ggcggaaacg 780
taaaagaagt tatggaaata agacttagaa gcaaacttaa gagtgtgttg atagtgcagt 840
atcttaaaat tttgtataat aggaattgaa gttaaattag atgctaaaaa tttgtaatta 900
agaaggagtg attacatgaa caaaaatata aaatattctc aaaacttttt aacgagtgaa 960
aaagtactca accaaataat aaaacaattg aatttaaaag aaaccgatac cgtttacgaa 1020
attggaacag gtaaagggca tttaacgacg aaactggcta aaataagtaa acaggtaacg 1080
tctattgaat tagacagtca tctattcaac ttatcgtcag aaaaattaaa actgaatact 1140
cgtgtcactt taattcacca agatattcta cagtttcaat tccctaacaa acagaggtat 1200
aaaattgttg ggagtattcc ttaccattta agcacacaaa ttattaaaaa agtggttttt 1260
gaaagccatg cgtctgacat ctatctgatt gttgaagaag gattctacaa gcgtaccttg 1320
gatattcacc gaacactagg gttgctcttg cacactcaag tctcgattca gcaattgctt 1380
aagctgccag cggaatgctt tcatcctaaa ccaaaagtaa acagtgtctt aataaaactt 1440
acccgccata ccacagatgt tccagataaa tattggaagc tatatacgta ctttgtttca 1500
aaatgggtca atcgagaata tcgtcaactg tttactaaaa atcagtttca tcaagcaatg 1560
aaacacgcca aagtaaacaa tttaagtacc gttacttatg agcaagtatt gtctattttt 1620
aatagttatc tattatttaa cgggaggaaa taattctatg agtcgctttt gtaaatttgg 1680
aaagttacac gttactaaag ggaatgtaga taaattatta ggtatactac tgacagcttc 1740
caaggagcta aagaggtccc tagcgctctt atcatgggga agctcggatc atatgcaaga 1800
caaaataaac tcgcaacagc acttggagaa atgggacgaa tcgagaaaac cctctttacg 1860
ctggattaca tatctaataa agccgtaagg agacgggttc aaaaaggttt aaataaagga 1920
gaagcaatca atgcattagc tagaactata ttttttggac aacgtggaga atttagagaa 1980
cgtgctctcc aagaccagtt acaaagagct agtgcactaa acataattat taacgctata 2040
agtgtgtgga acactgtata tatggaaaaa gccgtagaag aattaaaagc aagaggagaa 2100
tttagagaag atttaatgcc atatgcgtgg ccgttaggat gggaacatat caattttctt 2160
ggagaataca aatttgaagg attacatgac actgggcaaa tgaatttacg tcctttacgt 2220
ataaaagagc cgttttattc ttaatataac ggctcttttt atagaaaaaa tccttagcgt 2280
ggtttttttc cgaaatgctg gcggtacccc aagaattaga aatgagtaga tcaaattatt 2340
cacgaataga atcaggaaaa tcagatccaa ccataaaaac actagaacaa attgcaaagt 2400
taactaactc aacgctagta gtggatttaa tcccaaatga gccaacagaa ccagagccag 2460
aaacagaatc agaacaagta acattggatt tagaaatgga agaagaaaaa agcaatgact 2520
tcgtgtgaat aatgcacgaa atcgttgctt attttttttt aaaagcggta tactagatat 2580
aacgaaacaa cgaactgaat agaaacgaaa aaagagccat gacacattta taaaatgttt 2640
gacgacattt tataaatgca tagcccgata agattgccaa accaacgctt atcagttagt 2700
cagatgaact cttccctcgt aagaagttat ttaattaact ttgtttgaag acggtatata 2760
accgtactat cattatatag ggaaatcaga gagttttcaa gtatctaagc tactgaattt 2820
aagaattgtt aagcaatcaa tcggaaatcg tttgattgct ttttttgtat tcatttatag 2880
aaggtggagt ttgtatgaat catgatgaat gtaaaactta tataaaaaat agtttattgg 2940
agataagaaa attagcaaat atctatacac tagaaacgtt taagaaagag ttagaaaaga 3000
gaaatatcta cttagaaaca aaatcagata agtatttttc ttcggagggg gaagattata 3060
tatataagtt aatagaaaat aacaaaataa tttattcgat tagtggaaaa aaattgactt 3120
ataaaggaaa aaaatctttt tcaaaacatg caatattgaa acagttgaat gaaaaagcaa 3180
accaagttaa ttaaacaacc tattttatag gatttatagg aaaggagaac agctgaatga 3240
atatcccttt tgttgtagaa actgtgcttc atgacggctt gttaaagtac aaatttaaaa 3300
atagtaaaat tcgctcaatc actaccaagc caggtaaaag caaaggggct atttttgcgt 3360
atcgctcaaa atcaagcatg attggcggtc gtggtgttgt tctgacttcc gaggaagcga 3420
ttcaagaaaa tcaagataca tttacacatt ggacacccaa cgtttatcgt tatggaacgt 3480
atgcagacga aaaccgttca tacacgaaag gacattctga aaacaattta agacaaatca 3540
ataccttctt tattgatttt gatattcaca cggcaaaaga aactatttca gcaagcgata 3600
ttttaacaac cgctattgat ttaggtttta tgcctactat gattatcaaa tctgataaag 3660
gttatcaagc atattttgtt ttagaaacgc cagtctatgt gacttcaaaa tcagaattta 3720
aatctgtcaa agcagccaaa ataatttcgc aaaatatccg agaatatttt ggaaagtctt 3780
tgccagttga tctaacgtgt aatcattttg gtattgctcg cataccaaga acggacaatg 3840
tagaattttt tgatcctaat taccgttatt ctttcaaaga atggcaagat tggtctttca 3900
aacaaacaga taataagggc tttactcgtt caagtctaac ggttttaagc ggtacagaag 3960
gcaaaaaaca agtagatgaa ccctggttta atctcttatt gcacgaaacg aaattttcag 4020
gagaaaaggg tttaataggg cgtaataacg tcatgtttac cctctcttta gcctacttta 4080
gttcaggcta ttcaatcgaa acgtgcgaat ataatatgtt tgagtttaat aatcgattag 4140
atcaaccctt agaagaaaaa gaagtaatca aaattgttag aagtgcctat tcagaaaact 4200
atcaaggggc taatagggaa tacattacca ttctttgcaa agcttgggta tcaagtgatt 4260
taaccagtaa agatttattt gtccgtcaag ggtggtttaa attcaagaaa aaaagaagcg 4320
aacgtcaacg tgttcatttg tcagaatgga aagaagattt aatggcttat attagcgaaa 4380
aaagcgatgt atacaagcct tatttagtga cgaccaaaaa agagattaga gaagtgctag 4440
gcattcctga acggacatta gataaattgc tgaaggtact gaaggcgaat caggaaattt 4500
tctttaagat taaaccagga agaaatggtg gcattcaact tgctagtgtt aaatcattgt 4560
tgctatcgat cattaaagta aaaaaagaag aaaaagaaag ctatataaag gcgctgacaa 4620
attcttttga cttagagcat acattcattc aagagacttt aaacaagcta gcagaacgcc 4680
ctaaaacgga cacacaactc gatttgttta gctatgatac aggctgaaaa taaaacccgc 4740
actatgccat tacatttata tctatgatac gtgtttgttt tttctttgct gtttagcgaa 4800
tgattagcag aaatatacag agtaagattt taattaatta ttagggggag aaggagagag 4860
tagcccgaaa acttttagtt ggcttggact gaacgaagtg agggaaaggc tactaaaacg 4920
tcgaggggca gtgagagcga agcgaacact tgatttttta attttctatc ttttataggt 4980
cattagagta tacttatttg tcctataaac tatttagcag cataatagat ttattgaata 5040
ggtcatttaa gttgagcata ttagaggagg aaaatcttgg agaaatattt gaagaacccg 5100
attacatgga ttggattagt tcttgtggtt acgtggtttt taactaaaag tagtgaattt 5160
ttgatttttg gtgtgtgtgt cttgttgtta gtatttgcta gtcaaagtga ttaaata 5217

26

5230

DNA

Clostridium perfringens

26
gaattcgatt aagtcatctt acctctttta ttagtttttt cttataatct aatgataaca 60
tttttataat taatctataa accatatccc tctttggaat caaaatttat tatctactcc 120
tttgtagata tgttataata caagtatcag atctgggaga ccacaacggt ttcccactag 180
aaataatttt gtttaacttt agaaaggaga tatacgcatg caggatatct ctagaatgga 240
tccggctgct aacaaagccc gaaaggaagc tgagttggct gctgccaccg ctgagcaata 300
actagcataa ccccttgggg cctctaaacg ggtcttgagg ggttttttgc tgaaaggagg 360
aactatatcc ggatgacctg caggcaagct ctagaatcga tacgattttg aagtggcaac 420
agataaaaaa aagcagttta aaattgttgc tgaactttta aaacaagcaa atacaatcat 480
tgtcgcaaca gatagcgaca gagaaggcga aaacattgcc tggtcgatca ttcataaagc 540
aaatgccttt tctaaagata aaacgtataa aagactatgg atcaatagtt tagaaaaaga 600
tgtgatccgt agcggttttc aaaatttgca accaggaatg aattactatc ccttttatca 660
agaagcgcaa aagaaaaacg aaatgataca ccaatcagtg caaaaaaaga tataatggga 720
gataagacgg ttcgtgttcg tgctgacttg caccatatca taaaaatcga aacagcaaag 780
aatggcggaa acgtaaaaga agttatggaa ataagactta gaagcaaact taagagtgtg 840
ttgatagtgc agtatcttaa aattttgtat aataggaatt gaagttaaat tagatgctaa 900
aaatttgtaa ttaagaagga gtgattacat gaacaaaaat ataaaatatt ctcaaaactt 960
tttaacgagt gaaaaagtac tcaaccaaat aataaaacaa ttgaatttaa aagaaaccga 1020
taccgtttac gaaattggaa caggtaaagg gcatttaacg acgaaactgg ctaaaataag 1080
taaacaggta acgtctattg aattagacag tcatctattc aacttatcgt cagaaaaatt 1140
aaaactgaat actcgtgtca ctttaattca ccaagatatt ctacagtttc aattccctaa 1200
caaacagagg tataaaattg ttgggagtat tccttaccat ttaagcacac aaattattaa 1260
aaaagtggtt tttgaaagcc atgcgtctga catctatctg attgttgaag aaggattcta 1320
caagcgtacc ttggatattc accgaacact agggttgctc ttgcacactc aagtctcgat 1380
tcagcaattg cttaagctgc cagcggaatg ctttcatcct aaaccaaaag taaacagtgt 1440
cttaataaaa cttacccgcc ataccacaga tgttccagat aaatattgga agctatatac 1500
gtactttgtt tcaaaatggg tcaatcgaga atatcgtcaa ctgtttacta aaaatcagtt 1560
tcatcaagca atgaaacacg ccaaagtaaa caatttaagt accgttactt atgagcaagt 1620
attgtctatt tttaatagtt atctattatt taacgggagg aaataattct atgagtcgct 1680
tttgtaaatt tggaaagtta cacgttacta aagggaatgt agataaatta ttaggtatac 1740
tactgacagc ttccaaggag ctaaagaggt ccctagcgct cttatcatgg ggaagctcgg 1800
atcatatgca agacaaaata aactcgcaac agcacttgga gaaatgggac gaatcgagaa 1860
aaccctcttt acgctggatt acatatctaa taaagccgta aggagacggg ttcaaaaagg 1920
tttaaataaa ggagaagcaa tcaatgcatt agctagaact atattttttg gacaacgtgg 1980
agaatttaga gaacgtgctc tccaagacca gttacaaaga gctagtgcac taaacataat 2040
tattaacgct ataagtgtgt ggaacactgt atatatggaa aaagccgtag aagaattaaa 2100
agcaagagga gaatttagag aagatttaat gccatatgcg tggccgttag gatgggaaca 2160
tatcaatttt cttggagaat acaaatttga aggattacat gacactgggc aaatgaattt 2220
acgtccttta cgtataaaag agccgtttta ttcttaatat aacggctctt tttatagaaa 2280
aaatccttag cgtggttttt ttccgaaatg ctggcggtac cccaagaatt agaaatgagt 2340
agatcaaatt attcacgaat agaatcagga aaatcagatc caaccataaa aacactagaa 2400
caaattgcaa agttaactaa ctcaacgcta gtagtggatt taatcccaaa tgagccaaca 2460
gaaccagagc cagaaacaga atcagaacaa gtaacattgg atttagaaat ggaagaagaa 2520
aaaagcaatg acttcgtgtg aataatgcac gaaatcgttg cttatttttt tttaaaagcg 2580
gtatactaga tataacgaaa caacgaactg aatagaaacg aaaaaagagc catgacacat 2640
ttataaaatg tttgacgaca ttttataaat gcatagcccg ataagattgc caaaccaacg 2700
cttatcagtt agtcagatga actcttccct cgtaagaagt tatttaatta actttgtttg 2760
aagacggtat ataaccgtac tatcattata tagggaaatc agagagtttt caagtatcta 2820
agctactgaa tttaagaatt gttaagcaat caatcggaaa tcgtttgatt gctttttttg 2880
tattcattta tagaaggtgg agtttgtatg aatcatgatg aatgtaaaac ttatataaaa 2940
aatagtttat tggagataag aaaattagca aatatctata cactagaaac gtttaagaaa 3000
gagttagaaa agagaaatat ctacttagaa acaaaatcag ataagtattt ttcttcggag 3060
ggggaagatt atatatataa gttaatagaa aataacaaaa taatttattc gattagtgga 3120
aaaaaattga cttataaagg aaaaaaatct ttttcaaaac atgcaatatt gaaacagttg 3180
aatgaaaaag caaaccaagt taattaaaca acctatttta taggatttat aggaaaggag 3240
aacagctgaa tgaatatccc ttttgttgta gaaactgtgc ttcatgacgg cttgttaaag 3300
tacaaattta aaaatagtaa aattcgctca atcactacca agccaggtaa aagcaaaggg 3360
gctatttttg cgtatcgctc aaaatcaagc atgattggcg gtcgtggtgt tgttctgact 3420
tccgaggaag cgattcaaga aaatcaagat acatttacac attggacacc caacgtttat 3480
cgttatggaa cgtatgcaga cgaaaaccgt tcatacacga aaggacattc tgaaaacaat 3540
ttaagacaaa tcaatacctt ctttattgat tttgatattc acacggcaaa agaaactatt 3600
tcagcaagcg atattttaac aaccgctatt gatttaggtt ttatgcctac tatgattatc 3660
aaatctgata aaggttatca agcatatttt gttttagaaa cgccagtcta tgtgacttca 3720
aaatcagaat ttaaatctgt caaagcagcc aaaataattt cgcaaaatat ccgagaatat 3780
tttggaaagt ctttgccagt tgatctaacg tgtaatcatt ttggtattgc tcgcatacca 3840
agaacggaca atgtagaatt ttttgatcct aattaccgtt attctttcaa agaatggcaa 3900
gattggtctt tcaaacaaac agataataag ggctttactc gttcaagtct aacggtttta 3960
agcggtacag aaggcaaaaa acaagtagat gaaccctggt ttaatctctt attgcacgaa 4020
acgaaatttt caggagaaaa gggtttaata gggcgtaata acgtcatgtt taccctctct 4080
ttagcctact ttagttcagg ctattcaatc gaaacgtgcg aatataatat gtttgagttt 4140
aataatcgat tagatcaacc cttagaagaa aaagaagtaa tcaaaattgt tagaagtgcc 4200
tattcagaaa actatcaagg ggctaatagg gaatacatta ccattctttg caaagcttgg 4260
gtatcaagtg atttaaccag taaagattta tttgtccgtc aagggtggtt taaattcaag 4320
aaaaaaagaa gcgaacgtca acgtgttcat ttgtcagaat ggaaagaaga tttaatggct 4380
tatattagcg aaaaaagcga tgtatacaag ccttatttag tgacgaccaa aaaagagatt 4440
agagaagtgc taggcattcc tgaacggaca ttagataaat tgctgaaggt actgaaggcg 4500
aatcaggaaa ttttctttaa gattaaacca ggaagaaatg gtggcattca acttgctagt 4560
gttaaatcat tgttgctatc gatcattaaa gtaaaaaaag aagaaaaaga aagctatata 4620
aaggcgctga caaattcttt tgacttagag catacattca ttcaagagac tttaaacaag 4680
ctagcagaac gccctaaaac ggacacacaa ctcgatttgt ttagctatga tacaggctga 4740
aaataaaacc cgcactatgc cattacattt atatctatga tacgtgtttg ttttttcttt 4800
gctgtttagc gaatgattag cagaaatata cagagtaaga ttttaattaa ttattagggg 4860
gagaaggaga gagtagcccg aaaactttta gttggcttgg actgaacgaa gtgagggaaa 4920
ggctactaaa acgtcgaggg gcagtgagag cgaagcgaac acttgatttt ttaattttct 4980
atcttttata ggtcattaga gtatacttat ttgtcctata aactatttag cagcataata 5040
gatttattga ataggtcatt taagttgagc atattagagg aggaaaatct tggagaaata 5100
tttgaagaac ccgattacat ggattggatt agttcttgtg gttacgtggt ttttaactaa 5160
aagtagtgaa tttttgattt ttggtgtgtg tgtcttgttg ttagtatttg ctagtcaaag 5220
tgattaaata 5230

27

5231

DNA

Clostridium perfringens

27
gaattcgatt aagtcatctt acctctttta ttagtttttt cttataatct aatgataaca 60
tttttataat taatctataa accatatccc tctttggaat caaaatttat tatctactcc 120
tttgtagata tgttataata caagtatcag atctataggg agaccacaac ggtttccctc 180
tagaaataat tttgtttaac tttaagaagg agatatacat atggctagca tgactggtgg 240
acagcaaatg ggtcgcggat ccggctgcta acaaagcccg aaaggaagct gagttggctg 300
ctgccaccgc tgagcaataa ctagcataac cccttggggc ctctaaacgg gtcttgaggg 360
gttttttgct gaaaggagga actatatccg actagaatcg atacgatttt gaagtggcaa 420
cagataaaaa aaagcagttt aaaattgttg ctgaactttt aaaacaagca aatacaatca 480
ttgtcgcaac agatagcgac agagaaggcg aaaacattgc ctggtcgatc attcataaag 540
caaatgcctt ttctaaagat aaaacgtata aaagactatg gatcaatagt ttagaaaaag 600
atgtgatccg tagcggtttt caaaatttgc aaccaggaat gaattactat cccttttatc 660
aagaagcgca aaagaaaaac gaaatgatac accaatcagt gcaaaaaaag atataatggg 720
agataagacg gttcgtgttc gtgctgactt gcaccatatc ataaaaatcg aaacagcaaa 780
gaatggcgga aacgtaaaag aagttatgga aataagactt agaagcaaac ttaagagtgt 840
gttgatagtg cagtatctta aaattttgta taataggaat tgaagttaaa ttagatgcta 900
aaaatttgta attaagaagg agtgattaca tgaacaaaaa tataaaatat tctcaaaact 960
ttttaacgag tgaaaaagta ctcaaccaaa taataaaaca attgaattta aaagaaaccg 1020
ataccgttta cgaaattgga acaggtaaag ggcatttaac gacgaaactg gctaaaataa 1080
gtaaacaggt aacgtctatt gaattagaca gtcatctatt caacttatcg tcagaaaaat 1140
taaaactgaa tactcgtgtc actttaattc accaagatat tctacagttt caattcccta 1200
acaaacagag gtataaaatt gttgggagta ttccttacca tttaagcaca caaattatta 1260
aaaaagtggt ttttgaaagc catgcgtctg acatctatct gattgttgaa gaaggattct 1320
acaagcgtac cttggatatt caccgaacac tagggttgct cttgcacact caagtctcga 1380
ttcagcaatt gcttaagctg ccagcggaat gctttcatcc taaaccaaaa gtaaacagtg 1440
tcttaataaa acttacccgc cataccacag atgttccaga taaatattgg aagctatata 1500
cgtactttgt ttcaaaatgg gtcaatcgag aatatcgtca actgtttact aaaaatcagt 1560
ttcatcaagc aatgaaacac gccaaagtaa acaatttaag taccgttact tatgagcaag 1620
tattgtctat ttttaatagt tatctattat ttaacgggag gaaataattc tatgagtcgc 1680
ttttgtaaat ttggaaagtt acacgttact aaagggaatg tagataaatt attaggtata 1740
ctactgacag cttccaagga gctaaagagg tccctagcgc tcttatcatg gggaagctcg 1800
gatcatatgc aagacaaaat aaactcgcaa cagcacttgg agaaatggga cgaatcgaga 1860
aaaccctctt tacgctggat tacatatcta ataaagccgt aaggagacgg gttcaaaaag 1920
gtttaaataa aggagaagca atcaatgcat tagctagaac tatatttttt ggacaacgtg 1980
gagaatttag agaacgtgct ctccaagacc agttacaaag agctagtgca ctaaacataa 2040
ttattaacgc tataagtgtg tggaacactg tatatatgga aaaagccgta gaagaattaa 2100
aagcaagagg agaatttaga gaagatttaa tgccatatgc gtggccgtta ggatgggaac 2160
atatcaattt tcttggagaa tacaaatttg aaggattaca tgacactggg caaatgaatt 2220
tacgtccttt acgtataaaa gagccgtttt attcttaata taacggctct ttttatagaa 2280
aaaatcctta gcgtggtttt tttccgaaat gctggcggta ccccaagaat tagaaatgag 2340
tagatcaaat tattcacgaa tagaatcagg aaaatcagat ccaaccataa aaacactaga 2400
acaaattgca aagttaacta actcaacgct agtagtggat ttaatcccaa atgagccaac 2460
agaaccagag ccagaaacag aatcagaaca agtaacattg gatttagaaa tggaagaaga 2520
aaaaagcaat gacttcgtgt gaataatgca cgaaatcgtt gcttattttt ttttaaaagc 2580
ggtatactag atataacgaa acaacgaact gaatagaaac gaaaaaagag ccatgacaca 2640
tttataaaat gtttgacgac attttataaa tgcatagccc gataagattg ccaaaccaac 2700
gcttatcagt tagtcagatg aactcttccc tcgtaagaag ttatttaatt aactttgttt 2760
gaagacggta tataaccgta ctatcattat atagggaaat cagagagttt tcaagtatct 2820
aagctactga atttaagaat tgttaagcaa tcaatcggaa atcgtttgat tgcttttttt 2880
gtattcattt atagaaggtg gagtttgtat gaatcatgat gaatgtaaaa cttatataaa 2940
aaatagttta ttggagataa gaaaattagc aaatatctat acactagaaa cgtttaagaa 3000
agagttagaa aagagaaata tctacttaga aacaaaatca gataagtatt tttcttcgga 3060
gggggaagat tatatatata agttaataga aaataacaaa ataatttatt cgattagtgg 3120
aaaaaaattg acttataaag gaaaaaaatc tttttcaaaa catgcaatat tgaaacagtt 3180
gaatgaaaaa gcaaaccaag ttaattaaac aacctatttt ataggattta taggaaagga 3240
gaacagctga atgaatatcc cttttgttgt agaaactgtg cttcatgacg gcttgttaaa 3300
gtacaaattt aaaaatagta aaattcgctc aatcactacc aagccaggta aaagcaaagg 3360
ggctattttt gcgtatcgct caaaatcaag catgattggc ggtcgtggtg ttgttctgac 3420
ttccgaggaa gcgattcaag aaaatcaaga tacatttaca cattggacac ccaacgttta 3480
tcgttatgga acgtatgcag acgaaaaccg ttcatacacg aaaggacatt ctgaaaacaa 3540
tttaagacaa atcaatacct tctttattga ttttgatatt cacacggcaa aagaaactat 3600
ttcagcaagc gatattttaa caaccgctat tgatttaggt tttatgccta ctatgattat 3660
caaatctgat aaaggttatc aagcatattt tgttttagaa acgccagtct atgtgacttc 3720
aaaatcagaa tttaaatctg tcaaagcagc caaaataatt tcgcaaaata tccgagaata 3780
ttttggaaag tctttgccag ttgatctaac gtgtaatcat tttggtattg ctcgcatacc 3840
aagaacggac aatgtagaat tttttgatcc taattaccgt tattctttca aagaatggca 3900
agattggtct ttcaaacaaa cagataataa gggctttact cgttcaagtc taacggtttt 3960
aagcggtaca gaaggcaaaa aacaagtaga tgaaccctgg tttaatctct tattgcacga 4020
aacgaaattt tcaggagaaa agggtttaat agggcgtaat aacgtcatgt ttaccctctc 4080
tttagcctac tttagttcag gctattcaat cgaaacgtgc gaatataata tgtttgagtt 4140
taataatcga ttagatcaac ccttagaaga aaaagaagta atcaaaattg ttagaagtgc 4200
ctattcagaa aactatcaag gggctaatag ggaatacatt accattcttt gcaaagcttg 4260
ggtatcaagt gatttaacca gtaaagattt atttgtccgt caagggtggt ttaaattcaa 4320
gaaaaaaaga agcgaacgtc aacgtgttca tttgtcagaa tggaaagaag atttaatggc 4380
ttatattagc gaaaaaagcg atgtatacaa gccttattta gtgacgacca aaaaagagat 4440
tagagaagtg ctaggcattc ctgaacggac attagataaa ttgctgaagg tactgaaggc 4500
gaatcaggaa attttcttta agattaaacc aggaagaaat ggtggcattc aacttgctag 4560
tgttaaatca ttgttgctat cgatcattaa agtaaaaaaa gaagaaaaag aaagctatat 4620
aaaggcgctg acaaattctt ttgacttaga gcatacattc attcaagaga ctttaaacaa 4680
gctagcagaa cgccctaaaa cggacacaca actcgatttg tttagctatg atacaggctg 4740
aaaataaaac ccgcactatg ccattacatt tatatctatg atacgtgttt gttttttctt 4800
tgctgtttag cgaatgatta gcagaaatat acagagtaag attttaatta attattaggg 4860
ggagaaggag agagtagccc gaaaactttt agttggcttg gactgaacga agtgagggaa 4920
aggctactaa aacgtcgagg ggcagtgaga gcgaagcgaa cacttgattt tttaattttc 4980
tatcttttat aggtcattag agtatactta tttgtcctat aaactattta gcagcataat 5040
agatttattg aataggtcat ttaagttgag catattagag gaggaaaatc ttggagaaat 5100
atttgaagaa cccgattaca tggattggat tagttcttgt ggttacgtgg tttttaacta 5160
aaagtagtga atttttgatt tttggtgtgt gtgtcttgtt gttagtattt gctagtcaaa 5220
gtgattaaat a 5231

28

86

DNA

Clostridium perfringens

28
gaagatcttt aaaatgaagg agaaaaaaat gaaaatagga tacgcacgag tttcaactca 60
aggaggatcc aaatgatcag atcttc 86

29

336

PRT

Clostridium perfringens

29
Met Lys Lys Lys Phe Ile Ser Leu Val Ile Val Ser Ser Leu Leu Asn
1 5 10 15
Gly Cys Leu Leu Ser Pro Arg Leu Val Tyr Ala Asn Asp Ile Gly Lys
20 25 30
Thr Thr Thr Ile Thr Arg Asn Lys Thr Ser Asp Gly Tyr Thr Ile Ile
35 40 45
Thr Gln Asn Asp Lys Trp Ile Ile Ser Tyr Gln Ser Val Asp Ser Ser
50 55 60
Ser Lys Asn Glu Asp Gly Phe Thr Ala Ser Ile Asp Ala Arg Phe Ile
65 70 75 80
Asp Asp Lys Tyr Ser Ser Glu Met Thr Thr Leu Ile Asn Leu Thr Gly
85 90 95
Phe Met Ser Ser Lys Lys Glu Asp Val Ile Lys Lys Tyr Asn Leu His
100 105 110
Asp Asn Thr Asn Ser Thr Ala Ile Asn Phe Pro Val Arg Tyr Ser Ile
115 120 125
Ser Ile Leu Asn Glu Ser Ile Asn Glu Asn Val Lys Ile Val Asp Ser
130 135 140
Ile Pro Lys Asn Thr Ile Ser Gln Lys Thr Val Ser Asn Thr Met Gly
145 150 155 160
Tyr Lys Ile Gly Gly Ser Ile Glu Ile Glu Glu Asn Lys Pro Lys Ala
165 170 175
Ser Ile Glu Ser Glu Tyr Ala Glu Ser Ser Thr Ile Glu Tyr Val Gln
180 185 190
Pro Asp Phe Ser Thr Ile Gln Thr Asp His Ser Thr Ser Lys Ala Ser
195 200 205
Trp Asp Thr Lys Phe Thr Glu Thr Thr Arg Gly Asn Tyr Asn Leu Lys
210 215 220
Ser Asn Asn Pro Val Tyr Gly Asn Glu Met Phe Met Tyr Gly Arg Tyr
225 230 235 240
Thr Asn Val Pro Ala Thr Glu Asn Ile Ile Pro Asp Tyr Gln Met Ser
245 250 255
Lys Leu Ile Thr Gly Gly Leu Asn Pro Asn Met Ser Val Val Leu Thr
260 265 270
Ala Pro Asn Gly Thr Glu Glu Ser Ile Ile Lys Val Lys Met Glu Arg
275 280 285
Glu Arg Asn Cys Tyr Tyr Leu Asn Trp Asn Gly Ala Asn Trp Val Gly
290 295 300
Gln Val Tyr Ser Arg Leu Ala Phe Asp Thr Pro Asn Val Asp Ser His
305 310 315 320
Ile Phe Thr Phe Lys Ile Asn Trp Leu Thr His Lys Val Thr Ala Ile
325 330 335

Number	Date	Country
958574	May 1964	GB
2030451	Apr 1980	GB
WO 9323543	Nov 1993	WO
WO 9717521	Jun 1995	WO
WO 9734001	Sep 1997	WO

Clostridium perfringens vaccine

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Abstract

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US Referenced Citations (1)

Foreign Referenced Citations (5)

Non-Patent Literature Citations (2)

Entry
Hunter et al., Infection and Immunity, 61:9:3958-3965, 1993.
Sakurai and Duncan, Infection and Immunity, 18:3:741-745, 1977.