Patent Application
20180133291
The invention relates to compositions and methods for cMLCK gene transfer. In some aspects, the invention provides compositions and methods for treating advanced heart failure in a subject by cMLCK gene transfer, in particular, by administering to a subject an effective amount of a polynucleotide vector that encodes a cMLCK protein, expressing the cMLCK protein from the polynucleotide vector in the heart cells of the subject, and improving ventricular function of the heart. In other aspects, the invention provides compositions and methods for expressing a cMLCK protein in a subject, in particular, by administering to a subject a polynucleotide vector that encodes the cMLCK protein and expressing the cMLCK protein from the polynucleotide vector in the heart cells of the subject, wherein the subject has advanced heart failure.
Heart failure affects approximately five million Americans, and more than 550,000 new patients are diagnosed with the condition each year. Current drug therapy for heart failure is primarily directed to angiotensin-converting enzyme (ACE) inhibitors, which are vasodilators that cause blood vessels to expand, lowering blood pressure and reducing the heart's workload. While the percent reduction in mortality has been significant, the actual reduction in mortality with ACE inhibitors has averaged only 3%-4%, and there are several potential side effects. Additional limitations are associated with other options for preventing or treating heart failure. For example, heart transplantation is clearly more expensive and invasive than drug treatment, and it is further limited by the availability of donor hearts. Uses of mechanical devices, such as biventricular pacemakers, are similarly invasive and expensive. Thus, there has been a need for new therapies given the deficiencies in current therapies.
One promising new therapy involves administration of neuregulin (hereinafter referred to as “NRG”) to a patient suffering from or at risk of developing heart failure. NRGs, a family of EGF-like growth factors, comprises a family of structurally related growth and differentiation factors that include NRG1, NRG2, NRG3 and NRG4 and isoforms thereof, are involved in an array of biological responses: stimulation of breast cancer cell differentiation and secretion of milk proteins; induction of neural crest cell differentiation to Schwann cells; stimulation of skeletal muscle cell synthesis of acetylcholine receptors; and, promotion of myocardial cell survival and DNA synthesis. In vivo studies of neuregulin gene-targeted homozygous mouse embryos with severe defects in ventricular trabeculae formation and dorsal root ganglia development indicate that neuregulin is essential for heart and neural development.
NRGs bind to the EGF receptor family, which comprises EGFR, ErbB2, ErbB3 and ErbB4, each of which plays an important role in multiple cellular functions, including cell growth, differentiation, and survival. They are protein tyrosine kinase receptors, consisting of an extracellular ligand-binding domain, transmembrane kinase domain and cytoplasmic tyrosine kinase domain. After NRG binds to the extracellular domain of ErbB3 or ErbB4, it induces a conformational change that leads to heterodimer formation between ErbB3, ErbB4 and ErbB2 or homodimer formation between ErbB4 itself, which results in phosphorylation of the receptor's C-terminal domain inside the cell membrane. The phosphorylated intracellular domain then binds additional signal proteins inside the cell, activating the corresponding downstream AKT or ERK signaling pathway, and inducing a series of cell reactions, such as stimulation or depression of cell proliferation, cell differentiation, cell apoptosis, cell migration or cell adhesion. Among these receptors, mainly ErbB2 and ErbB4 are expressed in the heart.
It has been shown that the EGF-like domains of NRG-1, ranging in size from 50 to 64-amino acids, are sufficient to bind to and activate these receptors. Previous studies have shown that neuregulin-10 (NRG-1β) can bind directly to ErbB3 and ErbB4 with high affinity. The orphan receptor, ErbB2, can form heterodimer with ErbB3 and ErbB4 with higher affinity than ErbB3 or ErbB4 homodimers. Research in neural development has indicated that the formation of the sympathetic nervous system requires an intact NRG-1β, ErbB2 and ErbB3 signaling system. Targeted disruption of the NRG-1β or ErbB2 or ErbB4 led to embryonic lethality due to cardiac development defects. Recent studies also highlighted the roles of NRG1β, ErbB2 and ErbB4 in the cardiovascular development as well as in the maintenance of adult normal heart function. NRG-1β has been shown to enhance sarcomere organization in adult cardiomyocytes. Extended release of NRG via intravenous infusion significantly improves or protects against deterioration in myocardial performance in distinct animal models of heart failure as well as in clinical trials. These results make NRG-1 promising as a lead compound for the treatment of heart failure.
Zensun has reported that neuregulin enhances cardiac myosin light chain kinase (cMLCK) expression and cardiac myosin regulatory light chain (RLC) phosphorylation, which may improve actin-myosin interaction for contraction, and that cMLCK could serve as a potential therapeutic target for heart failure (see, e.g., WO 08/28405). In Gu et al., Cardiovascular Research, 88:334-343 (2010), Zensun has reported that the up-regulation of cMLCK could promote sarcomere reassembly and enhance contractility of the failing heart; however, cMLCK gene therapy was not as effective as neuregulin delivery in rats with myocardial infarction.
However, there is a need for methods for the treatment of heart failure if neuregulin treatment is not effective.
The present disclosure provides compositions and methods for cMLCK gene transfer. In some aspects, the invention provides methods for treating advanced heart failure in a subject, comprising administering to the subject an effective amount of a polynucleotide vector that encodes a cMLCK protein, expressing the cMLCK protein from the polynucleotide vector in the heart cells of the subject, and improving ventricular function of the heart. In some embodiments, the subject is a human.
In some aspects, the invention provides methods for expressing a cMLCK protein in a subject, comprising administering to the subject a polynucleotide vector that encodes the cMLCK protein and expressing the cMLCK protein from the polynucleotide vector in the heart cells of the subject, wherein the subject has advanced heart failure. In some embodiments, the subject is a human. In some embodiments, the subject has an improvement in ventricular function of the heart.
In some embodiments, the cMLCK-encoding polynucleotide vector is systemically administered to the subject. In other embodiments, the cMLCK-encoding polynucleotide vector is locally administered to the subject.
In some embodiments, the cMLCK-encoding polynucleotide vector is locally administered into the subject's heart via intracoronary infusion. In some embodiments, the cMLCK-encoding polynucleotide vector is locally administered into the subject's LV cavity. In other embodiments, the cMLCK-encoding polynucleotide vector is locally administered into the subject's heart surgically (i.e., by direct introduction of the vector or transfected cells into the subject's heart). In yet other embodiments, the cMLCK-encoding polynucleotide vector is administered to the heart of the subject in a liposome.
The subject in the disclosed methods is assessed for improvements of ventricular function of the heart. In some embodiments, the EF values of the left ventricle of the subject is enhanced by at least 5%. In some embodiments, the EF values of the left ventricle of the subject is enhanced by at least 10%. In some embodiments, the EF values of the left ventricle of the subject is enhanced by at least 20%. In some embodiments, the Left Ventricular End-Diastolic Volume (LVEDV) or Left Ventricular End-Systolic Volume (LVESV) of the subject is reduced by at least 5%. In some embodiments, the LVEDV or LVESV of the subject is reduced by at least 10%. In some embodiments, the LVEDV or LVESV of the subject is reduced by at least 20%.
In some embodiments, the polynucleotide vector encodes a polypeptide comprising an amino acid sequence having at least 70% identity to SEQ ID NO:1, SEQ ID NO:2, or SEQ ID NO:3. In some embodiments, the polynucleotide vector encodes a polypeptide comprising an amino acid sequence having at least 75%, 80%, 85%, 90%, or 95% identity to SEQ ID NO:1, SEQ ID NO:2, or SEQ ID NO:3. In a particular embodiment, the polynucleotide vector encodes a polypeptide comprising the amino acid sequence of SEQ ID NO:1, SEQ ID NO:2, or SEQ ID NO:3.
In other embodiments, the polynucleotide comprises a nucleic acid sequence having at least 70% identity to at least about 500 contiguous nucleotides selected from SEQ ID NO:4, SEQ ID NO:5, or SEQ ID NO:6, or the complement thereof. In some embodiments, the polynucleotide comprises a nucleic acid sequence having at least 70% identity to at least about 500, 600, 700, 800, 900, 1000, 1100, 1200, 1500, 2000, or 2400 contiguous nucleotides selected from SEQ ID NO:4, SEQ ID NO:5, or SEQ ID NO:6. In some embodiments, the polynucleotide comprises a nucleic acid sequence having at least 75% identity to at least about 500 contiguous nucleotides selected from SEQ ID NO:4, SEQ ID NO:5, or SEQ ID NO:6. In some embodiments, the polynucleotide comprises a nucleic acid sequence having at least 75% identity to at least about 500, 600, 700, 800, 900, 1000, 1100, 1200, 1500, 2000, or 2400 contiguous nucleotides selected from SEQ ID NO:4, SEQ ID NO:5, or SEQ ID NO:6. In some embodiments, the polynucleotide comprises a nucleic acid sequence having at least 80% identity to at least about 500 contiguous nucleotides selected from SEQ ID NO:4, SEQ ID NO:5, or SEQ ID NO:6. In some embodiments, the polynucleotide comprises a nucleic acid sequence having at least 80% identity to at least about 500, 600, 700, 800, 900, 1000, 1100, 1200, 1500, 2000, or 2400 contiguous nucleotides selected from SEQ ID NO:4, SEQ ID NO:5, or SEQ ID NO:6. In some embodiments, the polynucleotide comprises a nucleic acid sequence having at least 85% identity to at least about 500 contiguous nucleotides selected from SEQ ID NO:4, SEQ ID NO:5, or SEQ ID NO:6. In some embodiments, the polynucleotide comprises a nucleic acid sequence having at least 85% identity to at least about 500, 600, 700, 800, 900, 1000, 1100, 1200, 1500, 2000, or 2400 contiguous nucleotides selected from SEQ ID NO:4, SEQ ID NO:5, or SEQ ID NO:6. In some embodiments, the polynucleotide comprises a nucleic acid sequence having at least 90% identity to at least about 500 contiguous nucleotides selected from SEQ ID NO:4, SEQ ID NO:5, or SEQ ID NO:6. In some embodiments, the polynucleotide comprises a nucleic acid sequence having at least 90% identity to at least about 500, 600, 700, 800, 900, 1000, 1100, 1200, 1500, 2000, or 2400 contiguous nucleotides selected from SEQ ID NO:4, SEQ ID NO:5, or SEQ ID NO:6. In some embodiments, the polynucleotide comprises a nucleic acid sequence having at least 95% identity to at least about 500 contiguous nucleotides selected from SEQ ID NO:4, SEQ ID NO:5, or SEQ ID NO:6. In some embodiments, the polynucleotide comprises a nucleic acid sequence having at least 95% identity to at least about 500, 600, 700, 800, 900, 1000, 1100, 1200, 1500, 2000, or 2400 contiguous nucleotides selected from SEQ ID NO:4, SEQ ID NO:5, or SEQ ID NO:6. In certain embodiments, the polynucleotide comprises at least about 500 nucleotides selected from the nucleic acid sequence of SEQ ID NO:4, SEQ ID NO:5, or SEQ ID NO:6, or the complement thereof. In certain embodiments, the polynucleotide comprises at least about 500, 600, 700, 800, 900, 1000, 1100, 1200, 1500, 2000, or 2400 nucleotides selected from the nucleic acid sequence of SEQ ID NO:4, SEQ ID NO:5, or SEQ ID NO:6, or the complement thereof. In a particular embodiment, the polynucleotide comprises the nucleic acid sequence of SEQ ID NO:4, SEQ ID NO:5, or SEQ ID NO:6, or the complement thereof.
In one embodiment, the subject in the disclosed methods has a NYHA Class III heart failure. In another embodiment, the subject has a NYHA Class IV heart failure. In yet another embodiment, the subject has a plasma level of N-terminal pro-brain natriuretic peptide (NT-proBNP) of more than 4000 fmol/ml. In yet another embodiment, the subject is not responsive to neuregulin treatment.
In some embodiments, the polynucleotide vector is a viral vector. In a further embodiment, the viral vector is an adeno-associated viral vectors (AAV). In yet another embodiment, the AAV is adeno-associated viral vectors 9 (AAV9).
In some embodiments, the dose in the disclosed methods is about 1×1010-1×1015gc/patient. In some embodiments, the dose is about 1×1010-5×1014gc/patient. In some embodiments, the dose is about 1×1011-1×1014gc/patient. In some embodiments, the dose is about 1×1011-5×1013gc/patient. In some embodiments, the dose is about 5×101° -5×1011 gc/patient. In some embodiment, the dose is about 2×1011-5×1011 gc/patient. In one embodiment, the dose is about 1×1010 gc/patient. In another embodiment, the dose is about 2×1010 gc/patient. In another embodiment, the dose is about 5×1010 gc/patient. In one embodiment, the dose is about 1×1011 gc/patient. In another embodiment, the dose is about 2×1011 gc/patient. In another embodiment, the dose is about 5×1011 gc/patient. In one embodiment, the dose is about 1×1012 gc/patient. In another embodiment, the dose is about 2×1012 gc/patient. In another embodiment, the dose is about 5×1012 gc/patient. In one embodiment, the dose is about 1×1013 gc/patient. In another embodiment, the dose is about 2×1013 gc/patient. In another embodiment, the dose is about 5×1013 gc/patient. In one embodiment, the dose is about 1×1014 gc/patient. In another embodiment, the dose is about 2×1014 gc/patient. In yet another embodiment, the dose is about 5×1014 gc/patient.
In another aspect, the present disclosure provides compositions for cMLCK gene therapy. In some embodiments, the composition is a polynucleotide vector that encodes a cMLCK protein. In some embodiments, the polynucleotide vector is a viral vector. In one embodiment, the viral vector is an adeno-associated viral vectors (AAV). In a specific embodiment, the polynucleotide vector is an AAV9.
In another aspect, the present disclosure provides pharmaceutical compositions. Such compositions comprise a therapeutically effective amount of a cMLCK-encoding polynucleotide vector and a pharmaceutically acceptable carrier. In some embodiments, the polynucleotide vector is a viral vector. In one embodiment, the viral vector is an adeno-associated viral vectors (AAV). In a specific embodiment, the polynucleotide vector is an AAV9. In some embodiments, water is the pharmaceutically acceptable carrier. In some embodiments, saline solutions and aqueous dextrose and glycerol solutions are employed as liquid carriers, particularly for injectable solutions.
In another aspect, the present disclosure provides compositions disclosed herein for use in the various disclosed methods. In some embodiments, the compositions disclosed herein are used for treating advanced heart failure in a subject, comprising administering to the subject an effective amount of a polynucleotide vector that encodes a cMLCK protein, expressing the cMLCK protein from the polynucleotide vector in the heart cells of the subject, and improving ventricular function of the heart. In some embodiments, the composition is a polynucleotide vector that encodes a cMLCK protein. In some embodiments, the polynucleotide vector is a viral vector. In one embodiment, the viral vector is an adeno-associated viral vectors (AAV). In a specific embodiment, the polynucleotide vector is an AAV9.
In other embodiments, the compositions disclosed herein are used for expressing a cMLCK protein in a subject, comprising administering to the subject a polynucleotide vector that encodes the cMLCK protein and expressing the cMLCK protein from the polynucleotide vector in the heart cells of the subject, wherein the subject has advanced heart failure. In some embodiments, the composition is a polynucleotide vector that encodes a cMLCK protein. In some embodiments, the polynucleotide vector is a viral vector. In one embodiment, the viral vector is an adeno-associated viral vectors (AAV). In a specific embodiment, the polynucleotide vector is an AAV9.
The invention is based in part on the discovery that advanced heart failure patients are not responsive to neuregulin treatment. Within the scope of this invention, delivery of exogenous cMLCK to the heart of advanced heart failure patients and expression of the exogenous cMLCK therein is effective for improving cardiovascular function of the patients and treating heart failure. Thus, the present invention provides a treatment for advanced heart failure patients.
Unless defined otherwise, all technical and scientific terms used herein have the same meaning as is commonly understood by one of ordinary skill in the art to which this invention belongs. All patents, applications, published applications and other publications referred to herein are incorporated by reference in their entirety. If a definition set forth in this section is contrary to or otherwise inconsistent with a definition set forth in the patents, applications, published applications and other publications that are herein incorporated by reference, the definition set forth in this section prevails over the definition that is incorporated herein by reference.
As used herein, the singular forms “a,” “an,” and “the” mean “at least one” or “one or more” unless the context clearly dictates otherwise.
As used herein, “neuregulin” or “NRG” refers to proteins or peptides that can bind and activate ErbB2, ErbB3, ErbB4 or combinations thereof, including but not limited to all neuregulin isoforms, neuregulin EGF domain alone, polypeptides comprising neuregulin EGF-like domain, neuregulin mutants or derivatives, and any kind of neuregulin-like gene products that also activate the above receptors as described in detail below. Neuregulin can bind to and activates ErbB2/ErbB4 or ErbB2/ErbB3 heterodimers. Neuregulin also includes NRG-1, NRG-2, NRG-3, and NRG-4 proteins, peptides, fragments and compounds that mimic the activities of neuregulin. Neuregulin can activate the above ErbB receptors and modulate their biological reactions, e.g., stimulate breast cancer cell differentiation and milk protein secretion; induce the differentiation of neural crest cell into Schwann cell; stimulate acetylcholine receptor synthesis in skeletal muscle cell; and/or improve cardiocyte differentiation, survival and DNA synthesis. Neuregulin also includes those variants with conservative amino acid substitutions that do not substantially alter their biological activity. Suitable conservative substitutions of amino acids are known to those of skill in this art and may be made generally without altering the biological activity of the resulting molecule. Those of skill in this art recognize that, in general, single amino acid substitutions in non-essential regions of a polypeptide do not substantially alter biological activity (see, e.g., Watson et al., Molecular Biology of the Gene, 4th ed., The Benjamin/Cummings Pub. Co., p.224 (1987)). Neuregulin protein encompasses a neuregulin protein and peptide. Neuregulin nucleic acid encompasses neuregulin nucleic acid and neuregulin oligonucleotides.
As used herein, “cMLCK” refers to cardiac myosin light chain kinase, which include proteins or peptides which have an amino acid sequence that is identical to SEQ ID NO:1, SEQ ID NO:2, or SEQ ID NO:3, as well as proteins sharing sequence similarity, e.g., 70%, 75%, 80%, 85%, 90%, 95%, or greater percent identity, with the amino acid sequence of SEQ ID NO:1, SEQ ID NO:2, or SEQ ID NO:3. Further, these proteins have a biological activity in common with the polypeptide having the amino acid sequence of SEQ ID NO:1, SEQ ID NO:2 or SEQ ID NO:3, including, but not limited to, antigenic cross-reactivity, autoinhibition, phosphorylation activity, and the like. It is also contemplated that a cMLCK protein can have one or more conservative or non-conservative amino acid substitutions, or additions or deletions from the amino acid sequence of SEQ ID NO:1, SEQ ID NO:2 or SEQ ID NO:3 so long as the protein having such sequence alteration shares a biological activity as described above with the polypeptide of SEQ ID NO:1, SEQ ID NO:2 or SEQ ID NO:3. cMLCK also includes proteins or peptides expressed from different mutations, different spliced forms and various sequence polymorphisms of the cMLCK gene. cMLCK includes its variants that maintain one or more of its functions of cMLCK. It is recognized that the gene or cDNA encoding cMLCK can be considerably mutated without materially altering one or more cMLCK functions. First, the genetic code is well-known to be degenerate, and thus different codons may encode the same amino acids. Second, even where an amino acid substitution is introduced, the mutation can be conservative and have no material impact on the essential functions of cMLCK. Third, part of the cMLCK polypeptide can be deleted without impairing or eliminating all of its functions. Fourth, insertions or additions can be made in cMLCK, for example, adding epitope tags, without impairing or eliminating its functions. Other modifications can be made without materially impairing one or more functions of cMLCK, for example, in vivo or in vitro chemical and biochemical modifications which incorporate unusual amino acids. Such modifications include, for example, acetylation, carboxylation, phosphorylation, glycosylation, ubiquination, labeling with radionuclides, and various enzymatic modifications, as will be readily appreciated by those skilled in the art. A variety of methods for labeling proteins and substituents or labels useful for such purposes are well known in the art, and include radioactive isotopes such as ligands which bind to labeled antiligands (e.g., antibodies), fluorophores, chemiluminescent agents, enzymes, and antiligands. Functional fragments and variants can be of varying length. For example, some fragments have at least 10, 25, 50, 75, 100, or 200 or more amino acid residues.
As used herein, “functional fragments and variants of cMLCK” refer to those fragments and variants that maintain one or more functions of cMLCK. It is recognized that the gene or cDNA encoding cMLCK can be considerably mutated without materially altering one or more cMLCK functions. First, the genetic code is well-known to be degenerate, and thus different codons may encode the same amino acids. Second, even where an amino acid substitution is introduced, the mutation can be conservative and have no material impact on the essential functions of cMLCK. Third, part of the cMLCK polypeptide can be deleted without impairing or eliminating all of its functions. Fourth, insertions or additions can be made in cMLCK, for example, adding epitope tags, without impairing or eliminating its functions. Other modifications can be made without materially impairing one or more functions of cMLCK, for example, in vivo or in vitro chemical and biochemical modifications which incorporate unusual amino acids. Such modifications include, for example, acetylation, carboxylation, phosphorylation, glycosylation, ubiquination, labeling with radionuclides, and various enzymatic modifications, as will be readily appreciated by those skilled in the art. A variety of methods for labeling proteins and substituents or labels useful for such purposes are well known in the art, and include radioactive isotopes such as ligands which bind to labeled antiligands (e.g., antibodies), fluorophores, chemiluminescent agents, enzymes, and antiligands. Functional fragments and variants can be of varying length. For example, some fragments have at least 10, 25, 50, 75, 100, or 200 or more amino acid residues.
As used herein, “myosin light chain” refers to an about 18 kDa protein which associates with the myosin heavy chain and participates in the regulation of myosin's force-generating ATPase activity. There are two major groupings of MLC: MLC1, sometimes referred to as the essential myosin light chain, abbreviated ELC; and MLC2, sometimes referred to as the regulatory myosin light chain, abbreviated RLC. RLC is the primary biological target of myosin light chain kinase (MLCK)-mediated phosphorylation. When phosphorylated by MLCK the phosphorylated form of RLC is abbreviated of RLC-P. Isoforms of ELC and RLC existing in skeletal, smooth, and cardiac muscle have been described. As an example, the human cardiac RLC gene and cDNA are described by Macera et al., Genomics 13: 829-831 (1992); (GenBank accession No. NM00432).
As used herein, a “functional fragment or variant of myosin light chain” refers to a polypeptide which is capable of being phosphorylated by a protein having myosin light chain kinase biological activity. It includes any polypeptide six or more amino acid residues in length which is capable of being phosphorylated by a protein having myosin light chain kinase biological activity.
As used herein, “myosin light chain kinase biological activity” refers to the in vitro or in vivo enzymatic ability of a polypeptide or protein to mediate covalent incorporation of a phosphate into a regulatory myosin light chain. The term encompasses such enzymatic activity observed with any isoform of MLCK (for example, smooth muscle, skeletal muscle, and cardiac MLCK isoforms), as well as such enzymatic activity observed with fragments and variants of MLCK isoforms (for example, naturally occurring mutants; mutations, insertions and deletions introduced through recombinant DNA techniques; and fragments generated by proteolysis).
As used herein, “protein” is synonymous with “polypeptide” or “peptide” unless the context clearly dictates otherwise.
As used herein, the terms “nucleic acid”, “nucleotide” and “polynucleotide” refer to deoxyribonucleotides, deoxyribonucleic acids, ribonucleotides, and ribonucleic acids, and polymeric forms thereof, and include either single- or double-stranded forms. In some embodiments, such terms refer to deoxyribonucleic acids (e.g., cDNA or DNA). In other embodiments, such terms refer to ribonucleic acid (e.g., mRNA or RNA).
As used herein, the terms “subject” and “patient” are used interchangeably and refer to a mammal such as a non-primate (e.g., cows, pigs, horses, cats, dogs, rats etc.) and a primate (e.g., monkey and human), most preferably a human.
As used herein, “vector” refers to discrete elements that are used to introduce heterologous DNA into cells for either expression or replication thereof. Selection and use of such vehicles are well known within the skill of the artisan. An expression vector includes vectors capable of expressing DNA that are operatively linked with regulatory sequences, such as promoter regions, that are capable of effecting expression of such DNA fragments. Thus, an expression vector refers to a recombinant DNA or RNA construct, such as a plasmid, a phage, recombinant virus or other vector that, upon introduction into an appropriate host cell, results in expression of the cloned DNA. Appropriate expression vectors are well known to those of skill in the art and include those that are replicable in eukaryotic cells and/or prokaryotic cells and those that remain episomal or those which integrate into the host cell genome.
As used herein, “ejection fraction” or “EF” means the portion of blood that is pumped out of a filled left ventricle (LV) as the result of a heartbeat. It may be defined by the following formula: (LV diastolic volume—LV systolic volume)/LV diastolic volume.
As used herein, “fractional shortening” or “FS” means a ratio of the change in the diameter of the left ventricle between the contracted and relaxed states. It may be defined by the following formula: (LV end diastolic diameter—LV end systolic diameter)/LV end diastolic diameter.
As used herein, “heart failure” means an abnormality of cardiac function where the heart does not pump blood at the rate needed for the requirements of metabolizing tissues. Heart failure includes a wide range of disease states such as congestive heart failure, myocardial infarction, tachyarrhythmia, familial hypertrophic cardiomyopathy, ischemic heart disease, idiopathic dilated cardiomyopathy, myocarditis and the like. The heart failure can be caused by any number of factors, including, without limitation, ischemic, congenital, rheumatic, or idiopathic forms. Chronic cardiac hypertrophy is a significantly diseased state which is a precursor to congestive heart failure and cardiac arrest.
As used herein, “advanced heart failure” means a heart failure condition with at least one of the following characteristics: (1) disease progression to NYHA Class III and IV, especially Class IV, (2) episodes with clinical signs of fluid retention and/or peripheral hypoperfusion, (3) objective evidence of severe cardiac dysfunction, shown by at least one of the following: left ventricular ejection fraction of less than 30%, pseudonormal or restrictive mitral inflow pattern at Doppler-echocardiography; high left and/or right ventricular filling pressures; elevated plasma level of N-terminal pro-brain natriuretic peptide (NT-proBNP) or BNP, (4) severe impairment of functional capacity demonstrated by either inability to exercise, a 6-minute walk test distance of less than 300 m or a peak oxygen uptake of less than 12-14 ml/kg/min, (5) history of more than one heart failure hospitalization in the past 6 months, or (6) presence of any of the five previous characteristics despite conventional heart therapies and symptom management strategies.
It is well known in the art that a patient's heart failure can be classified according to the severity of their symptoms. The most commonly used classification system is the New York Heart Association (NYHA) Functional Classification. It places patients in one of four categories based on how much they are limited during physical activity, as follows: Class I: patients with cardiac disease but resulting in no limitation of physical activity. Ordinary physical activity does not cause undue fatigue, palpitation, dyspnea or anginal pain; Class II: patients with cardiac disease resulting in slight limitation of physical activity. They are comfortable at rest. Ordinary physical activity results in fatigue, palpitation, dyspnea or anginal pain; Class III: patients with cardiac disease resulting in marked limitation of physical activity. They are comfortable at rest. Less than ordinary activity causes fatigue, palpitation, dyspnea or anginal pain; Class IV: patients with cardiac disease resulting in inability to carry on any physical activity without discomfort. Symptoms of heart failure or the anginal syndrome may be present even at rest. If any physical activity is undertaken, discomfort increases.
As used herein, “N-terminal pro-brain natriuretic peptide” or “NT-proBNP” means the inactive remnant N-terminal proBNP, which is the pro hormone of BNP. BNP is a hormonally active natriuretic peptide that is mainly released from the cardiomyocytes in the left ventricular wall. In reaction to stretch and tension of the myocardial wall, proBNP splits into BNP and the hormonally inactive remnant NT-proBNP by proteolytic cleavage. The plasma NT-proBNP level can be analyzed by commercial kits. Different kits may have different results regarding the same sample; however, the results of different kits can to conversed into each other. The numerical value of plasma NT-proBNP level in the present disclosure is measured using the commercial kit by Biomedica, Austria (CE No. Q1530510).
As used herein, an “effective amount” of an active agent for treating a particular disease is an amount that is sufficient to ameliorate, or in some manner reduce the symptoms associated with the disease. The amount may cure the disease but, typically, is administered in order to ameliorate the symptoms of the disease.
The terms “treatment,” “treating,” and the like are used herein to generally mean obtaining a desired pharmacological and/or physiological effect in a subject actively suffering from a condition. The effect may completely or partially treat a disease or symptom thereof and thus may be therapeutic in terms of a partial or complete cure for a disease and/or adverse effect attributable to the disease. “Treatment” as used herein covers any treatment of a disease in a mammal, particularly a human, and includes inhibiting the disease, i.e., arresting its development; or relieving the disease, i.e., causing regression of the disease. In one example, treatment refers to treating patients with, or at risk for, development of heart disease and related conditions, e.g., advanced heart failure. More specifically, “treatment” is intended to mean providing a therapeutically detectable and beneficial effect on a patient suffering from heart disease.
The terms “prevent,” “preventing,” and the like are used herein to generally refer to preventing a disease from occurring in a subject which may be predisposed to the disease but has not yet been diagnosed as suffering from the disease. Thus, “prevent” can refer to prophylactic or preventative measures, wherein the object is to prevent or slow down (lessen) cardiac hypertrophy.
As used herein, “recombinant expression vector” refers to systems of polynucleotides which operatively encode polypeptides expressible in eukaryotes or prokaryotes.
As used herein, the term “pharmaceutically acceptable” means approved by a regulatory agency of the Federal or a state government, or listed in the U.S. Pharmacopeia or other generally recognized pharmacopeia for use in animals, and more particularly in humans.
As used herein, the term “carrier” refers to a diluent, adjuvant, excipient, or vehicle with which a therapeutic of the invention is administered. Such pharmaceutical carriers can be sterile liquids, such as water and oils, including those of petroleum, animal, vegetable or synthetic origin, such as peanut oil, soybean oil, mineral oil, sesame oil and the like.
In some aspects, the present disclosure provides methods for treating advanced heart failure in a subject, comprising administering to the subject an effective amount of a polynucleotide vector that encodes a cMLCK protein, expressing the cMLCK protein from the polynucleotide vector in the heart cells of the subject, and improving ventricular function of the heart. In some embodiments, the subject is a human.
In some aspects, the present disclosure provides methods for expressing a cMLCK protein in a subject, comprising administering to the subject a polynucleotide vector that encodes the cMLCK protein and expressing the cMLCK protein from the polynucleotide vector in the heart cells of the subject, wherein the subject has advanced heart failure. In some embodiments, the subject is a human. In some embodiments, the subject has an improvement in ventricular function of the heart.
In some embodiments, the cMLCK-encoding polynucleotide vector is systemically administered to the subject. In other embodiments, the cMLCK-encoding polynucleotide vector is locally administered to the subject. Methods of administration include but are not limited to intravenous, intracoronary, and intraventricular. The polynucleotide vector may be administered by any convenient route, for example by infusion or bolus injection, and may be administered together with other biologically active agents.
In some specific embodiments, it may be desirable to administer the cMLCK-encoding polynucleotide vector locally to the heart of the subject. This may be achieved by, for example, and not by way of limitation, intracoronary infusion, local infusion during surgery, by injection, by means of a catheter, or by means of an implant, said implant being of a porous, non-porous, or gelatinous material, including membranes, such as sialastic membranes, or fibers. Intracoronary infusion may be facilitated by an intracoronary catheter, for example, attached to a pump. In some embodiments, the cMLCK-encoding polynucleotide vector is locally administered into the subject's heart via intracoronary infusion. In some embodiments, the cMLCK-encoding polynucleotide vector is locally administered into the subject's LV cavity. In other embodiments, the cMLCK-encoding polynucleotide vector is locally administered into the subject's heart surgically (i.e., by direct introduction of the vector or transfected cells into the subject's heart).
In some embodiments, the cMLCK-encoding polynucleotide vector is administered to the heart of the subject in a liposome. Various delivery systems are known and can be used to administer cMLCK-encoding polynucleotide vector in the invention, e.g., encapsulation in liposomes; microparticles; microcapsules; receptor-mediated endocytosis (see, e.g., Wu and Wu, J. Biol. Chem. 262:4429-4432 (1987)); micells biocompatible polymers, including natural polymers and synthetic polymers; lipoproteins; polypeptides; polysaccharides; lipopolysaccharides; artificial viral envelopes; metal particles; and bacteria, or viruses, such as baculovirus, adenovirus and retrovirus, bacteriophage, cosmid, plasmid, fungal vectors and other recombination vehicles typically used in the art. In a specific embodiment, the cMLCK-encoding polynucleotide can be delivered in a vesicle, in particular, a liposome (see Langer, Science 249:1527-1533 (1990); Treat et al., in Liposomes in the Therapy of Infectious Disease and Cancer, Lopez-Berestein and Fidler (eds.), Liss, New York, pp. 317-372, 353-365 (1989)).
The subject in the disclosed methods is assessed for improvements of ventricular function of the heart, using a number of parameters, including without limitation, EF values of the left ventricle, Left Ventricular End-Diastolic Volume (LVEDV), Left Ventricular End-Systolic Volume (LVESV), Left Ventricular End-Diastolic Pressure (LVEDP), Left Ventricular Systolic Pressure (LVSP). These parameters may be monitored using methods well-known in the art, for example, by echocardiography. In some embodiments, the EF values of the left ventricle of the subject is enhanced by at least 5%. In some embodiments, the EF values of the left ventricle of the subject is enhanced by at least 10%. In some embodiments, the EF values of the left ventricle of the subject is enhanced by at least 20%. In some embodiments, the LVEDV or LVESV of the subject is reduced by at least 5%. In some embodiments, the LVEDV or LVESV of the subject is reduced by at least 10%. In some embodiments, the LVEDV or LVESV of the subject is reduced by at least 20%.
The polynucleotide vector encoding cMLCK include those polynucleotide vectors encoding substantially the same amino acid sequences as found in native cMLCK, as well as those encoding amino acid sequences having functionally inconsequential amino acid substitutions, and thus have amino acid sequences which differ from that of the native sequence. Examples include the substitution of one basic residue for another (e.g., Arg for Lys), the substitution of one hydrophobic residue for another (e.g., Leu for Ile), or the substitution of one aromatic residue for another (e.g., Phe for Tyr).
The polynucleotide vector encoding cMLCK also include fragments of cMLCK. The polynucleotide of the invention include human and related genes (homologues) in other species. In some embodiments, the polynucleotide sequences are from vertebrates, or more particularly, mammals. In some embodiments, the polynucleotide sequences are of rat origin. In some embodiments of the invention, the polynucleotide sequences are of human origin.
In some embodiments, the polynucleotide vector encodes a polypeptide comprising an amino acid sequence having at least 70% identity to SEQ ID NO:1. In some embodiments, the polynucleotide vector encodes a polypeptide comprising an amino acid sequence having at least 75%, 80%, 85%, 90%, or 95% identity to SEQ ID NO:1. In a particular embodiment, the polynucleotide vector encodes a polypeptide comprising the amino acid sequence of SEQ ID NO:1.
In other embodiments, the polynucleotide comprises a nucleic acid sequence having at least 70% identity to at least about 500 contiguous nucleotides selected from SEQ ID NO:4 or the complement thereof. In some embodiments, the polynucleotide comprises a nucleic acid sequence having at least 70% identity to at least about 500, 600, 700, 800, 900, 1000, 1100, 1200, 1500, 2000, or 2400 contiguous nucleotides selected from SEQ ID NO:4. In some embodiments, the polynucleotide comprises a nucleic acid sequence having at least 75% identity to at least about 500 contiguous nucleotides selected from SEQ ID NO:4. In some embodiments, the polynucleotide comprises a nucleic acid sequence having at least 75% identity to at least about 500, 600, 700, 800, 900, 1000, 1100, 1200, 1500, 2000, or 2400 contiguous nucleotides selected from SEQ ID NO:4. In some embodiments, the polynucleotide comprises a nucleic acid sequence having at least 80% identity to at least about 500 contiguous nucleotides selected from SEQ ID NO:4. In some embodiments, the polynucleotide comprises a nucleic acid sequence having at least 80% identity to at least about 500, 600, 700, 800, 900, 1000, 1100, 1200, 1500, 2000, or 2400 contiguous nucleotides selected from SEQ ID NO:4. In some embodiments, the polynucleotide comprises a nucleic acid sequence having at least 85% identity to at least about 500 contiguous nucleotides selected from SEQ ID NO:4. In some embodiments, the polynucleotide comprises a nucleic acid sequence having at least 85% identity to at least about 500, 600, 700, 800, 900, 1000, 1100, 1200, 1500, 2000, or 2400 contiguous nucleotides selected from SEQ ID NO:4. In some embodiments, the polynucleotide comprises a nucleic acid sequence having at least 90% identity to at least about 500 contiguous nucleotides selected from SEQ ID NO:4. In some embodiments, the polynucleotide comprises a nucleic acid sequence having at least 90% identity to at least about 500, 600, 700, 800, 900, 1000, 1100, 1200, 1500, 2000, or 2400 contiguous nucleotides selected from SEQ ID NO:4. In some embodiments, the polynucleotide comprises a nucleic acid sequence having at least 95% identity to at least about 500 contiguous nucleotides selected from SEQ ID NO:4. In some embodiments, the polynucleotide comprises a nucleic acid sequence having at least 95% identity to at least about 500, 600, 700, 800, 900, 1000, 1100, 1200, 1500, 2000, or 2400 contiguous nucleotides selected from SEQ ID NO:4. In certain embodiments, the polynucleotide comprises at least about 500 nucleotides selected from the nucleic acid sequence of SEQ ID NO:4, or the complement thereof. In certain embodiments, the polynucleotide comprises at least about 500, 600, 700, 800, 900, 1000, 1100, 1200, 1500, 2000, or 2400 nucleotides selected from the nucleic acid sequence of SEQ ID NO:4, or the complement thereof. In a particular embodiment, the polynucleotide comprises the nucleic acid sequence of SEQ ID NO:4, or the complement thereof.
In some embodiments, the polynucleotide vector encodes a polypeptide comprising an amino acid sequence having at least 70% identity to SEQ ID NO:2. In some embodiments, the polynucleotide vector encodes a polypeptide comprising an amino acid sequence having at least 75%, 80%, 85%, 90%, or 95% identity to SEQ ID NO:2. In a particular embodiment, the polynucleotide vector encodes a polypeptide comprising the amino acid sequence of SEQ ID NO:2.
In other embodiments, the polynucleotide comprises a nucleic acid sequence having at least 70% identity to at least about 500 contiguous nucleotides selected from SEQ ID NO:5 or the complement thereof. In some embodiments, the polynucleotide comprises a nucleic acid sequence having at least 70% identity to at least about 500, 600, 700, 800, 900, 1000, 1100, 1200, 1500, 2000, or 2400 contiguous nucleotides selected from SEQ ID NO:5. In some embodiments, the polynucleotide comprises a nucleic acid sequence having at least 75% identity to at least about 500 contiguous nucleotides selected from SEQ ID NO:5. In some embodiments, the polynucleotide comprises a nucleic acid sequence having at least 75% identity to at least about 500, 600, 700, 800, 900, 1000, 1100, 1200, 1500, 2000, or 2400 contiguous nucleotides selected from SEQ ID NO:5. In some embodiments, the polynucleotide comprises a nucleic acid sequence having at least 80% identity to at least about 500 contiguous nucleotides selected from SEQ ID NO:5. In some embodiments, the polynucleotide comprises a nucleic acid sequence having at least 80% identity to at least about 500, 600, 700, 800, 900, 1000, 1100, 1200, 1500, 2000, or 2400 contiguous nucleotides selected from SEQ ID NO:5. In some embodiments, the polynucleotide comprises a nucleic acid sequence having at least 85% identity to at least about 500 contiguous nucleotides selected from SEQ ID NO:5. In some embodiments, the polynucleotide comprises a nucleic acid sequence having at least 85% identity to at least about 500, 600, 700, 800, 900, 1000, 1100, 1200, 1500, 2000, or 2400 contiguous nucleotides selected from SEQ ID NO:5. In some embodiments, the polynucleotide comprises a nucleic acid sequence having at least 90% identity to at least about 500 contiguous nucleotides selected from SEQ ID NO:5. In some embodiments, the polynucleotide comprises a nucleic acid sequence having at least 90% identity to at least about 500, 600, 700, 800, 900, 1000, 1100, 1200, 1500, 2000, or 2400 contiguous nucleotides selected from SEQ ID NO:5. In some embodiments, the polynucleotide comprises a nucleic acid sequence having at least 95% identity to at least about 500 contiguous nucleotides selected from SEQ ID NO:5. In some embodiments, the polynucleotide comprises a nucleic acid sequence having at least 95% identity to at least about 500, 600, 700, 800, 900, 1000, 1100, 1200, 1500, 2000, or 2400 contiguous nucleotides selected from SEQ ID NO:5. In certain embodiments, the polynucleotide comprises at least about 500 nucleotides selected from the nucleic acid sequence of SEQ ID NO:5, or the complement thereof. In certain embodiments, the polynucleotide comprises at least about 500, 600, 700, 800, 900, 1000, 1100, 1200, 1500, 2000, or 2400 nucleotides selected from the nucleic acid sequence of SEQ ID NO:5, or the complement thereof. In a particular embodiment, the polynucleotide comprises the nucleic acid sequence of SEQ ID NO:5, or the complement thereof.
In some embodiments, the polynucleotide vector encodes a polypeptide comprising an amino acid sequence having at least 70% identity to SEQ ID NO:3. In some embodiments, the polynucleotide vector encodes a polypeptide comprising an amino acid sequence having at least 75%, 80%, 85%, 90%, or 95% identity to SEQ ID NO:3. In a particular embodiment, the polynucleotide vector encodes a polypeptide comprising the amino acid sequence of SEQ ID NO:3.
In other embodiments, the polynucleotide comprises a nucleic acid sequence having at least 70% identity to at least about 500 contiguous nucleotides selected from SEQ ID NO:6 or the complement thereof. In some embodiments, the polynucleotide comprises a nucleic acid sequence having at least 70% identity to at least about 500, 600, 700, 800, 900, 1000, 1100, 1200, 1500, 2000, or 2400 contiguous nucleotides selected from SEQ ID NO:6. In some embodiments, the polynucleotide comprises a nucleic acid sequence having at least 75% identity to at least about 500 contiguous nucleotides selected from SEQ ID NO:6. In some embodiments, the polynucleotide comprises a nucleic acid sequence having at least 75% identity to at least about 500, 600, 700, 800, 900, 1000, 1100, 1200, 1500, 2000, or 2400 contiguous nucleotides selected from SEQ ID NO:6. In some embodiments, the polynucleotide comprises a nucleic acid sequence having at least 80% identity to at least about 500 contiguous nucleotides selected from SEQ ID NO:6. In some embodiments, the polynucleotide comprises a nucleic acid sequence having at least 80% identity to at least about 500, 600, 700, 800, 900, 1000, 1100, 1200, 1500, 2000, or 2400 contiguous nucleotides selected from SEQ ID NO:6. In some embodiments, the polynucleotide comprises a nucleic acid sequence having at least 85% identity to at least about 500 contiguous nucleotides selected from SEQ ID NO:6. In some embodiments, the polynucleotide comprises a nucleic acid sequence having at least 85% identity to at least about 500, 600, 700, 800, 900, 1000, 1100, 1200, 1500, 2000, or 2400 contiguous nucleotides selected from SEQ ID NO:6. In some embodiments, the polynucleotide comprises a nucleic acid sequence having at least 90% identity to at least about 500 contiguous nucleotides selected from SEQ ID NO:6. In some embodiments, the polynucleotide comprises a nucleic acid sequence having at least 90% identity to at least about 500, 600, 700, 800, 900, 1000, 1100, 1200, 1500, 2000, or 2400 contiguous nucleotides selected from SEQ ID NO:6. In some embodiments, the polynucleotide comprises a nucleic acid sequence having at least 95% identity to at least about 500 contiguous nucleotides selected from SEQ ID NO:6. In some embodiments, the polynucleotide comprises a nucleic acid sequence having at least 95% identity to at least about 500, 600, 700, 800, 900, 1000, 1100, 1200, 1500, 2000, or 2400 contiguous nucleotides selected from SEQ ID NO:6. In certain embodiments, the polynucleotide comprises at least about 500 nucleotides selected from the nucleic acid sequence of SEQ ID NO:6, or the complement thereof. In certain embodiments, the polynucleotide comprises at least about 500, 600, 700, 800, 900, 1000, 1100, 1200, 1500, 2000, or 2400 nucleotides selected from the nucleic acid sequence of SEQ ID NO:6, or the complement thereof. In a particular embodiment, the polynucleotide comprises the nucleic acid sequence of SEQ ID NO:6, or the complement thereof.
Cloning of cMLCK-encoding polynucleotides is disclosed in WO 08/28405, the contents of which are incorporated by reference. The polynucleotides may be obtained by standard procedures known in the art from cloned DNA (e.g., a DNA “library”), by chemical synthesis, by cDNA cloning, or by the cloning of genomic DNA, or fragments thereof, purified from the desired cell, or by PCR amplification and cloning. See, e.g., Sambrook et al., Molecular Cloning, A Laboratory Manual, 3d. ed., Cold Spring Harbor Laboratory Press, Cold Spring Harbor, N.Y. (2001); Glover, D. M. (ed.), DNA Cloning: A Practical Approach, 2d. ed., MRL Press, Ltd., Oxford, U.K. (1995). Clones derived from genomic DNA may contain regulatory and intron DNA regions in addition to coding regions; clones derived from cDNA will contain only exon sequences. Whatever the source, the gene may be cloned into a suitable vector for propagation of the gene.
The cMLCK-encoding polynucleotides can then be inserted into an appropriate cloning vector. A large number of vector-host systems known in the art may be used. Possible cloning vectors include, but are not limited to, plasmids or modified viruses. Techniques for construction of expression vectors are well known in the art. See, e.g., Sambrook et al., 2001, Molecular Cloning—A Laboratory Manual, 3rd edition, Cold Spring Harbor Laboratory, Cold Spring Harbor, N.Y., and Ausubel et al., eds., Current Edition, Current Protocols in Molecular Biology, Greene Publishing Associates and Wiley Interscience, NY. The insertion into a cloning vector can, for example, be accomplished by ligating the DNA fragment into a cloning vector which has complementary cohesive termini. However, if the complementary restriction sites used to fragment the DNA are not present in the cloning vector, the ends of the DNA molecules may be enzymatically modified. Alternatively, any site desired may be produced by ligating nucleotide sequences (linkers) onto the DNA termini. These ligated linkers may comprise specific chemically synthesized oligonucleotides encoding restriction endonuclease recognition sequences. In an alternative method, the cleaved vector and cMLCK-encoding polynucleotide sequence may be modified by homopolymeric tailing.
In one embodiment, the subject in the disclosed methods has a NYHA Class III heart failure. In another embodiment, the subject has a NYHA Class IV heart failure. NYHA Class III heart failure and NYHA Class IV heart failure are defined above.
In yet another embodiment, the subject has a plasma level of N-terminal pro-brain natriuretic peptide (NT-proBNP) of more than 4000 fmol/ml. BNP and NT-proBNP plasma levels are promising tools in the daily management of suspected or established heart failure. Most studies on the use of BNP and NT-proBNP in clinical practice addressed their diagnostic properties, and an increasingly amount of evidence is available supporting the prognostic value of BNP and NT-proBNP. As NT-proBNP has about 6 times longer of half life in the blood than BNP, it is more widely used as a diagnostic or prognostic marker for heart failure. The plasma NT-proBNP level can be analyzed by commercial kits. Different kits may have different results regarding the same sample; however, the results of different kits can to conversed into each other.
Both BNP and NT-proBNP levels in the blood are used for screening and diagnosis of heart failure and are useful to establish prognosis in heart failure, as both markers are typically higher in patients with worse outcome. Thus, it is discovered a significantly elevated plasma level of BNP or NT-proBNP is indicative of the patient being suitable for heart failure treatment by cMLCK gene transfer. The compositions and methods of the invention are suitable for human patient with advanced heart failure, for example, the patient has a plasma level of N-terminal pro-brain natriuretic peptide (NT-proBNP) of more than 4000 fmol/ml, as measured using the commercial kit by Biomedica, Austria (CE No. Q1530510).
In yet another embodiment, the subject is not responsive to neuregulin treatment. The subject is not responsive to neuregulin treatment when neuregulin is not effective in ameliorating, or in some manner reducing the symptoms associated with the condition. Whether the subject is responsive to neuregulin treatment can be determined by standard clinical techniques well known to those of skill in the art, including, but not limited to, by examining the symptoms or parameters associated with the condition, such as NYHA Classification, EF value of the left ventricle, LVESV, LVEDV, 6 Minute Walk Distance, plasma level of BNP or NT-proBNP, Quality of Life Analysis (Kansas City Cardiomyopathy Questionnaire), all cause mortality, and all cause hospitalization.
In some embodiments, the polynucleotide vector is a viral vector. In a further embodiment, the viral vector is an adeno-associated viral vectors (AAV). In yet another embodiment, the AAV is adeno-associated viral vectors 9 (AAV9).
Gene delivery, gene transfer, transducing, and the like as used herein, are terms referring to the introduction of an exogenous polynucleotide (sometimes referred to as a transgene) into a host cell, irrespective of the method used for the introduction. Such methods include a variety of well-known techniques such as techniques facilitating the delivery of naked polynucleotides (such as electroporation, “gene gun” delivery and various other techniques used for the introduction of polynucleotides), as well as vector-mediated gene transfer (by, e.g., viral infection/transfection, or various other protein-based or lipid-based gene delivery complexes). The introduced polynucleotide can be stably or transiently maintained in the host cell. Stable maintenance typically requires that the introduced polynucleotide either contains an origin of replication compatible with the host cell or integrates into a replicon of the host cell such as an extrachromosomal replicon (e.g., a plasmid) or a nuclear or mitochondrial chromosome. A number of vectors are known to be capable of mediating transfer of genes to mammalian cells, as is known in the art.
A viral vector refers to a recombinantly produced virus or viral particle that comprises a polynucleotide to be delivered into a host cell. Examples of viral vectors include RNA virus such as retroviral vectors, herpes virus vectors, vaccinia vectors, adenovirus vectors, adeno-associated virus vectors, alphavirus vectors and the like. Alphavirus vectors, such as Semliki Forest virus-based vectors and Sindbis virus-based vectors, have also been developed for use in gene therapy and immunotherapy (see Schlesinger and Dubensky, Curr. Opin. Biotechnol. 5:434-439 (1999) and Ying, et al. Nat. Med. 5(7):823-827 (1999)).
In embodiments where gene transfer is mediated by a retroviral vector, a vector construct refers to the polynucleotide comprising the retroviral genome or part thereof, and a therapeutic gene. As used herein, retroviral mediated gene transfer or retroviral transduction carries the same meaning and refers to the process by which a gene or nucleic acid sequences are stably transferred into the host cell by virtue of the virus entering the cell and integrating its genome into the host cell genome. The virus can enter the host cell via its normal mechanism of infection or be modified such that it binds to a different host cell surface receptor or ligand to enter the cell. As used herein, retroviral vector refers to a viral particle capable of introducing exogenous nucleic acid into a cell through a viral or viral-like entry mechanism. Retroviruses carry their genetic information in the form of RNA; however, once the virus infects a cell, the RNA is reverse-transcribed into the DNA form which integrates into the genomic DNA of the infected cell. The integrated DNA form is called a provirus. Examples of retroviral vectors in which a single foreign gene can be inserted include, but are not limited to, Moloney murine leukemia virus (MoMuLV) vectors, harvey murine sarcoma virus (HaMuSV) vectors, murine mammary tumor virus (MuMTV) vectors, and Rous Sarcoma Virus (RSV) vectors. A number of additional retroviral vectors can incorporate a gene for a selectable marker so that transduced cells can be identified and generated.
In embodiments where gene transfer is mediated by a DNA viral vector, such as an adenovirus (Ad) or adeno-associated virus (AAV), a vector construct refers to the polynucleotide comprising the viral genome or part thereof, and a transgene. Adenoviruses (Ads) are a relatively well characterized, homogenous group of viruses, including over 50 serotypes (see, e.g., WO 95/27071). Ads do not require integration into the host cell genome. Recombinant Ad derived vectors, particularly those that reduce the potential for recombination and generation of wild-type virus, have also been constructed (see, e.g., WO 95/00655 and WO 95/11984).
Wild-type AAV has high infectivity and specificity integrating into the host cell's genome (see, e.g., Hermonat and Muzyczka, Proc. Natl. Acad. Sci. USA 81:6466-6470 (1984) and Lebkowski et al., Mol. Cell. Biol. 8:3988-3996 (1988)). As used herein, adeno-associated virus or AAV encompasses all subtypes, serotypes and pseudotypes, as well as naturally occurring and recombinant forms. A variety of AAV serotypes and strains are known in the art and are publicly available from sources, such as the ATCC, and academic or commercial sources. Alternatively, sequences from AAV serotypes and strains which are published and/or available from a variety of databases may be synthesized using known techniques. Adeno-associated viruses (AAV) are parvoviruses belonging to the genus Dependovirus. They are small, nonenveloped, single-stranded DNA viruses that require a helper virus in order to replicate. Co-infection with a helper virus (e.g., adenovirus, herpes virus, or vaccinia virus) is necessary to form functionally complete AAV virions. In vitro, in the absence of co-infection with a helper virus, AAV establishes a latent state in which the viral genome exists in an episomal form, but infectious virions are not produced. Subsequent infection by a helper virus “rescues” the genome, allowing it to be replicated and packaged into viral capsids, thereby reconstituting the infectious virion. Recent data indicate that in vivo both wild type AAV and recombinant AAV predominantly exist as large episomal concatemers.
AAVs are not associated with any known human diseases, are generally not considered pathogenic, and do not appear to alter the physiological properties of the host cell upon integration. AAV can infect a wide range of host cells, including non-dividing cells, and can infect cells from different species. In contrast to some vectors, which are quickly cleared or inactivated by both cellular and humoral responses. AAV vectors have shown persistent expression in various tissues in vivo. The persistence of recombinant AAV vectors in non-diving cells in vivo may be attributed to the lack of native AAV viral genes and the vector's ability to form episomal concatemers.
Andeno-associated virus (AAV) is an attractive vector system for use in the cell transduction of the present disclosure as it has a high frequency of persistence as an episomal concatemer and it can infect non-dividing cells, thus making it useful for delivery of genes into mammalian cells, for example, in tissue culture and in vivo. Studies demonstrating the use of AAV in gene delivery include Flotte et al., Proc. Natl. Acad. Sci. USA 90:10613-10617 (1993) and Walsh et al, J. Clin. Invest. 94:1440-1448 (1994). Recombinant AAV vectors have been used successfully for in vitro and in vivo transduction of marker genes and genes involved in human diseases (see, e.g., Walsh et al, J. Clin. Invest. 94:1440-1448 (1994)). AAV has a broad host range for infectivity. Details concerning the generation and use of rAAV vectors are described in U.S. Pat. Nos. 5,139,941 and 4,797,368.
Typically, recombinant AAV (rAAV) is made by cotransfecting a plasmid containing the gene of interest flanked by the two AAV terminal repeats and/or an expression plasmid containing the wild-type AAV coding sequences without the terminal repeats, for example pIM45. The cells are also infected and/or transfected with adenovirus and/or plasmids carrying the adenovirus genes required for AAV helper function. rAAV virus stocks made in such fashion are contaminated with adenovirus which must be physically separated from the rAAV particles (for example, by cesium chloride density centrifugation or column chromatography). Alternatively, adenovirus vectors containing the AAV coding regions and/or cell lines containing the AAV coding regions and/or some or all of the adenovirus helper genes could be used. Cell lines carrying the rAAV DNA as an integrated provirus can also be used.
Multiple serotypes of AAV exist in nature, with at least twelve serotypes (AAV1-AAV12) currently known. Despite the high degree of homology, the different serotypes have tropisms for different tissues. The receptor for AAV1 is unknown; however, AAV1 is known to transduce skeletal and cardiac muscle more efficiently than AAV2. Since in most of the studies have been done with pseudotyped vectors in which the vector DNA flanked with AAV2 ITR is packaged into capsids of alternate serotypes, it is clear that the biological differences are related to the capsid rather than to the genomes. Recent evidence indicates that DNA expression cassettes packaged in AAV1 capsids are at least 1 log10 more efficient at transducing cardiomyocytes than those packaged in AAV2 capsids. In some embodiments, the AAVs that do not produce an immune response in the subject are used. In some embodiments, the AAV in the invention is adeno-associated viral vectors 9 (AAV9). As used herein, AAV9.cMLCK vector refers to a cMLCK gene transfer vector based on the recombinant AAV9.
The dosage of the cMLCK-encoding polynucleotide vector in the disclosed methods that will be effective in the treatment of advanced heart failure can be determined by standard clinical techniques. The dosage of the cMLCK-encoding polynucleotide vector in the disclosed methods for expressing the cMLCK protein can also be determined by the clinical effects of the methods. In addition, in vitro assays may optionally be employed to help identify optimal dosage ranges. The precise dose to be employed in the formulation will also depend on the route of administration, and the seriousness of the heart failure, and should be decided according to the judgment of the practitioner and each patient's circumstances. In some embodiments, the dose in the disclosed methods is about 1×1010-1×1015gc/patient. In some embodiments, the dose is about 1×1010-5×1014gc/patient. In some embodiments, the dose is about 1×1011-1×1014gc/patient. In some embodiments, the dose is about 1×1011-5×1013gc/patient. In some embodiments, the dose is about 5×1010-5×1011 gc/patient. In some embodiment, the dose is about 2×1011-5×1011 gc/patient. In one embodiment, the dose is about 1×1010 gc/patient. In another embodiment, the dose is about 2×1010 gc/patient. In another embodiment, the dose is about 5×1010 gc/patient. In one embodiment, the dose is about 1×1011 gc/patient. In another embodiment, the dose is about 2×1011 gc/patient. In another embodiment, the dose is about 5×1011 gc/patient. In one embodiment, the dose is about 1×1012 gc/patient. In another embodiment, the dose is about 2×1012 gc/patient. In another embodiment, the dose is about 5×1012 gc/patient. In one embodiment, the dose is about 1×1013 gc/patient. In another embodiment, the dose is about 2×1013 gc/patient. In another embodiment, the dose is about 5×1013 gc/patient. In one embodiment, the dose is about 1×1014 gc/patient. In another embodiment, the dose is about 2×1014 gc/patient. In yet another embodiment, the dose is about 5×1014 gc/patient.
In another aspect, the present disclosure provides compositions for cMLCK gene therapy. In some embodiments, the composition is a polynucleotide vector that encodes a cMLCK protein. In some embodiments, the polynucleotide vector is a viral vector. In one embodiment, the viral vector is an adeno-associated viral vectors (AAV). In a specific embodiment, the polynucleotide vector is an AAV9.
In another aspect, the present disclosure provides pharmaceutical compositions. Such compositions comprise a therapeutically effective amount of a cMLCK-encoding polynucleotide vector and a pharmaceutically acceptable carrier. In some embodiments, the polynucleotide vector is a viral vector. In one embodiment, the viral vector is an adeno-associated viral vectors (AAV). In a specific embodiment, the polynucleotide vector is an AAV9. In some embodiments, water is the pharmaceutically acceptable carrier. In some embodiments, saline solutions and aqueous dextrose and glycerol solutions are employed as liquid carriers, particularly for injectable solutions. Suitable pharmaceutical excipients include starch, glucose, lactose, sucrose, gelatin, malt, rice, flour, chalk, silica gel, sodium stearate, glycerol monostearate, talc, sodium chloride, dried skim milk, glycerol, propylene, glycol, water, ethanol and the like. The composition, if desired, can also contain minor amounts of wetting or emulsifying agents, or pH buffering agents. These compositions can take the form of solutions, suspensions, emulsion, sustained-release formulations and the like. Examples of suitable pharmaceutical carriers are described in Remington's Pharmaceutical Sciences by E. W. Martin. Such compositions will contain a therapeutically effective amount of the therapeutic, preferably in purified form, together with a suitable amount of carrier so as to provide the form for proper administration to the patient. The formulation should suit the mode of administration.
In a specific embodiment, the composition is formulated in accordance with routine procedures as a pharmaceutical composition adapted for intravenous administration or intracoronary infusion to human beings. Typically, compositions for intravenous administration or intracoronary infusion are solutions in sterile isotonic aqueous buffer. Generally, the ingredients are supplied either separately or mixed together in unit dosage form, for example, as a dry lyophilized powder or water free concentrate in a hermetically sealed container such as an ampoule or sachet indicating the quantity of active agent. Where the composition is to be administered by infusion, it can be dispensed with an infusion bottle containing sterile pharmaceutical grade water or saline. Where the composition is administered by injection, an ampoule of sterile water for injection or saline can be provided so that the ingredients may be mixed prior to administration.
In another aspect, the present disclosure provides compositions disclosed herein for use in the various disclosed methods. In some embodiments, the compositions disclosed herein are used for treating advanced heart failure in a subject, comprising administering to the subject an effective amount of a polynucleotide vector that encodes a cMLCK protein, expressing the cMLCK protein from the polynucleotide vector in the heart cells of the subject, and improving ventricular function of the heart. In some embodiments, the composition is a polynucleotide vector that encodes a cMLCK protein. In some embodiments, the polynucleotide vector is a viral vector. In one embodiment, the viral vector is an adeno-associated viral vectors (AAV). In a specific embodiment, the polynucleotide vector is an AAV9.
In other embodiments, the compositions disclosed herein are used for expressing a cMLCK protein in a subject, comprising administering to the subject a polynucleotide vector that encodes the cMLCK protein and expressing the cMLCK protein from the polynucleotide vector in the heart cells of the subject, wherein the subject has advanced heart failure. In some embodiments, the composition is a polynucleotide vector that encodes a cMLCK protein. In some embodiments, the polynucleotide vector is a viral vector. In one embodiment, the viral vector is an adeno-associated viral vectors (AAV). In a specific embodiment, the polynucleotide vector is an AAV9.
The invention is illustrated by the following examples which are not intended to be limiting in any way.
This example describes the construction, production, and quality control of the cMLCK-encloding polynucleotide in an AAV9 vector.
The cis plasmid pZac2.1-cMCLK, in which human cMLCK (hcMLCK)-encoding polynucleotide (SEQ ID NO:4) transgene expression was driven by human cytomegalovirus (CMV) promoter, was constructed.
293 cells were transfected with cis plasmid pZac2.1-hcMCLK, trans plasmid pAAV2/9 containing the AAV2 rep gene and capsid protein genes from AAV9, and adenovirus helper plasmid pAdAF6. The cells were purified by gradient ultracentrifugation with increasing iodixanol concentration of 15%, 25%, 40%, and 54%, and purity analysis was conducted by SDS-PAGE and endotoxin assay (release criteria is <5 endotoxin units/ml for large animal studies).
The AAV9.cMLCK was obtained successfully. The data of one batch were listed as follows. Lot #1: Genome titer: 1.68×1013 GC/ml; Yield: 3.19×1013 GC; Purity: 100%; Endotoxin: <1 EU/ml.
Example 2 describes the expression of cMLCK transgene in vitro, including in HEK293 cells, H9C2 cells (a cardiac cell line), and cardiac myocytes from neonatal rats.
The expression of cMLCK transgene at mRNA and/or protein levels were confirmed in HEK293 cells and H9C2 cells. Quantitative RT-PCR was performed to measure mRNA level of cMLCK, and western blotting was performed using cells lysates to measure protein contents of cMLCK.
After confirming cMLCK transgene expression in HEK293 cells and H9C2 cells, the cMLCK transgene expression in isolated cardiac myoyctes was further evaluated. Cardiac myocytes were isolated from neonatal rats as previously described in Lai et al., Hum Gene Ther, 23(3):255-261 (2012). Total RNA was isolated from cells using STAT-60 (Tel-Test, Tex.), followed by RNeasy Mini kit (Qiagen) purification and DNase treatment to eliminate residual genomic DNA contamination. Quantitative RT-PCR was performed to compare mRNA content of cMLCK. Western blotting was performed using cells lysates to measure protein contents of cMLCK transgene expression.
Example 3 describes a series of studies to optimize the conditions for AAV9.cMLCK gene transfer.
Indirect coronary injection was used to deliver AAV9.cMLCK into mice. Male C57BL/6J mice (The Jackson Laboratories, Bar Harbor, Me.) aged 10-12 weeks were anesthetized and intubated. A thoracotomy was performed between the second and third rib space and the proximal aorta and pulmonary artery were isolated and occluded using a vascular clamp (Roth et al., Am J Physiol Heart Circ Physiol, 287(1):H172-177 (2004)). AAV9.cMLCK was injected into the LV cavity. The clamp was released 60 sec after occlusion.
The biodistribution of viral vector and cMLCK transgene were accessed by PCR and RT-PCR. Genomic DNA was isolated from a variety of organs (LV, lung, liver, skeletal muscle, spleen, intestine, kidney, stomach, and gonads) using DNeasy Mini kit (Qiagen). Quantitative PCR was performed to quantitate DNA copies of AAV9.cMLCK in each organ. Total RNA was isolated from a variety of organs using STAT-60 (Tel-Test, Tex.), followed by RNeasy Mini kit (Qiagen) purification and DNase treatment to eliminate residual genomic DNA contamination. Quantitative RT-PCR was performed to compare mRNA content of cMLCK. Western blotting was performed using LV homogenates to measure protein contents of cMLCK transgene expression.
The mRNA and protein expression of cMLCK transgene in the heart 2, 5, 10 weeks was compared after injection of 0, 5×1010, 2×1011, and 5×1011 gc/mouse AAV9.cMLCK.
The dose-dependent cMLCK transgene expression in LV samples was found after coronary gene delivery. The results showed decent cMLCK transgene expression occurred after injection of 5×1011 gc/mouse AAV9.cMLCK.
Example 4 describes the effect of AAV9.cMLCK gene transfer in improving cardiac function in pressure-overloaded mouse hearts. Chronic pressure overload, such as occurs with persistent hypertension, is associated with a higher risk of the development of clinical heart failure. Although this process generally takes decades to develop in patients, severe LV pressure overload associated with transverse aortic constriction (TAC) leads to LV hypertrophy and impaired LV function in weeks in mice. Pressure overload provides an efficient model to study the effects of AAV9.cMLCK gene transfer on the pressure-stressed heart.
Transverse aortic constriction (TAC) was performed on a cohort of C57BL/6N mice. Mice were anesthetized with 5% isoflurane in oxygen (1 l/min), intubated, and ventilated (pressure-controlled). Anesthesia was maintained with 1% isoflurane in oxygen. The chest was entered at the second intercostal space at the left upper sternal border, and a segment of the aortic arch between the innominate and left carotid arteries was dissected. A 7-0 silk suture was tied against a 27-gauge needle, which yield a substantial aortic constriction.
Three weeks after TAC, echocardiography was performed on the surviving mice to assess chamber dimensions and LV function. These mice were randomly divided into two groups. One group of mice received AAV9.cMLCK gene transfer by indirect intracoronary delivery, and another group of mice received PBS injection by the same way. Five weeks after gene transfer, chamber dimensions and LV function were assessed again by echocardiography. A series of echocardiography were performed in anesthetized mice. LV chamber dimensions, LVEF, and velocity of circumferential fiber shortening (Vcf) were determined. In addition, LV contractile function and relaxation were determined by in vivo hemodynamics. A 1.4F micromanometer catheter (Millar Instruments) was inserted via the right carotid artery and advanced into the LV of the anesthetized animals. LV pressure, LV ±dP/dt, end-systolic pressure-volume relationship (ESPVR), stroke volume, cardiac output, and systemic vascular resistance were determined.
Body weight, LV weight, lung weight, liver weight, and tibial length were determined at necropsy. Diastole arrested LV samples were divided into 3 pieces: a short-axis midwall LV ring was fixed in formalin for determination of cardiac myocyte size, cardiac apoptosis, and fibrosis, and the other 2 pieces were quickly frozen in liquid nitrogen and stored at −80° C. for biochemistry and molecular biology studies.
LV sections were stained with hematoxylin & eosin. Random fields from both the septum and LV free wall were photographed by an observer blinded to the group identity. Cardiac myocyte cross-sectional area was determined using NIH Image J software.
Terminal deoxynucleotidyl transferase-mediated dUTP nick end-labeling (TUNEL) assay was performed on LV sections using the CardioTACS In Situ Apoptosis Detection Kit (R&D Systems). DNA fragmentation assay was used to confirm changes in apoptosis rate. Activity of caspase 3/7 was measured using Caspase-Glo 3/7 Assay kit (Promega).
LV sections were stained with picrosirius red. Collagen deposition area was quantified using NIH Image J software and fractional collagen area was calculated. Expression of collagen I, collagen III, periostin, MMPs (matrix metalloproteinases), and TIMPs (tissue inhibitors of matrix metalloproteinases) were measured by quantitative RT-PCR and Western blotting.
Total RNA was isolated from LV samples using STAT-60 (Tel-Test, Tex.), followed by RNeasy Mini kit (Qiagen) purification and DNase treatment to eliminate residual genomic DNA contamination. Quantitative RT-PCR was performed to compare mRNA content of regulators of Ca2+handling (PLN, SERCA2a, calsequestrin, RyR2, FKBP12, L-type Ca2+ channel, and NCX), contractility (cTnl, cTnC, cTnT, and tropomysin), hypertrophy (ANF, BNP, a-SK actin, (3-MHC, FHL1, MEF2D), apoptosis (Piml, sFRP1, Bc12, Bax, and caspase 3), and fibrosis (collagen I, collage III, periostin, MMPs, and TIMPs).
Western blotting was performed using LV homogenates to measure protein contents of regulators of Ca2+ handling (PLN, phospho-PLN, SERCA2a, calsequestrin, RyR2, phosphor-RyR2, FKBP12, L-type Ca2+channel, and NCX), contractility (cTnl, phospho-cTnl, cTnC, cTnT, and tropomysin), hypertrophy (FHL1, MEF2D), apoptosis (Piml, sFRP1, Wifl, Bc12, Bax, and caspase 3), and fibrosis (collagen and periostin). Immunofluorescence microscopy was performed to determine expression of FHL1, MEF2D, PLN, Piml, sFRP1, and WIF1.
Example 5 describes treatment of advanced heart failure patients using gene transfer of AAV9.cMLCK.
Patients with NYHA Class III or IV heart failure or a plasma level of N-terminal pro-brain natriuretic peptide (NT-proBNP) of more than 4000 fmol/ml, or patients that are not responsive to neuregulin treatment, are treated with gene transfer of AAV9.cMLCK.
AAV9.cMLCK are locally administered to the heart of patients via intracoronary infusion at doses of 1×1011gc/patient to 5×1013gc/patient. In general, percutaneous intracoronary delivery is accomplished using standard catheters (5 Fr or 6 Fr guide or diagnostic) and infused using the MEDRAD Mark V ProVis angiographic injection system (Indianola, Pa.). Infusions occur over a 10-minute period in a cardiac catheterization laboratory after angiography. Standard catheter engagement technique with the coronary arteries is accomplished in the usual fashion with angiographic confirmation of good coaxial position and secure intubation to assure forward infusion antegrade into the coronary circulation. After 180 days, the ventricular function of these patients are monitored, such as EF values of the left ventricle, Left Ventricular End-Diastolic Volume (LVEDV), or Left Ventricular End-Systolic Volume (LVESV) of the patients, by echocardiography. The patients are assessed for improvements of ventricular function of the heart using such parameters.
All publications, patents and patent applications cited in this specification are herein incorporated by reference as if each individual publication or patent application were specifically and individually indicated to be incorporated by reference. Although the foregoing invention has been described in some detail by way of illustration and example for purposes of clarity of understanding, it will be readily apparent to those of ordinary skill in the art in light of the teachings of this invention that certain changes and modifications may be made thereto without departing from the spirit or scope of the appended claims.
| Number | Date | Country | Kind |
|---|---|---|---|
| CN201510232415.6 | May 2015 | CN | national |
| Filing Document | Filing Date | Country | Kind |
|---|---|---|---|
| PCT/CN2016/085699 | 6/14/2016 | WO | 00 |
