The present invention relates to combinatorial libraries which are based on hollow or filled polyelectrolyte capsules which are prepared by the layer-by-layer method. The LbL method makes it possible to control the number and the concentration, and the distance between the dye molecules on the nanometer scale, resulting in a higher quantity of coded information in the wall (envelope) than is known to be possessed by particles (beads, solid microparticles) which are color-coded in their volume or at their surface. Furthermore, the fluorescent dye is entirely concentrated at the surface, something which is advantageous for FRET-based detection in homogeneous particle assays since the high background fluorescence of the dyes which are located in the interior of the particle, and which do not, therefore, participate in the FRET, is entirely absent.13 The second part of the invention deals with the possibility of filling capsules with different macromolecules while still keeping the capsules permeable to small molecules. Color-coded capsules of this nature can be used as combinatorial capturing receptacles which are able to take up a substantial quantity of specific substances from a reaction mixture. Subsequently, the different capsules, containing different substances in their interior, can be sorted on the basis of their specific fluorescence signals. These combinatorial libraries can be used in many fields in medicine, biology and chemistry.
There is a limit to the extent to which assays and microtiter plates can be miniaturized with a view to increasing assay capacity still further. The libraries which are based on beads open up the possibility of an alternative method. New developments in flow cytometry (e.g. COPAS™ bead flow sorting) make it possible to achieve a throughput of up to 100 000 particles per second. For this reason, the libraries which are based on beads could become the leading technology in screening or collecting operations.1-5,7
We have prepared hollow capsules from poly-electrolytes,6 with the capsules containing different color combinations in their walls. While the color-coded capsules can be sorted like beads, they are hollow and can possess many binding sites both on the wall surface and in their interior.
These capsules possess a variety of advantages as compared with the beads technology:
The present invention relates to sensors which are constructed, by means of the layer-by-layer (LbL) method, on colloids having diameters of less than 100 μm and which react to chemical substances or physical parameters. Where appropriate, the colloidal template can be leached out in a following step, such that hollow capsules are formed.
The sensor effect is achieved by means of a layer of defined thickness composed of a special material which either swells or shrinks when the concentration of a substance in the surrounding solution is altered or when physical parameters are changed. The emission of fluorescent dyes is used for detecting this process. Two variants of the mode of action are possible (
1. The sensitive layer, having a thickness of between 0.1 nm and 10 nm, is located between two layers composed of polyelectrolytes. The polyelectrolyte layer on one side of the sensitive layer contains a firmly integrated fluorescent dye of higher absorption energy (donor) while the polyelectrolyte layer on the other side contains a fluorescent dye of lower absorption energy (acceptor). Emitting nanoparticles can also be used instead of fluorescent dyes. The dye pair is coordinated such that a Förster (fluorescence) resonance energy transfer (FRET) takes place. The efficiency of the FRET depends sensitively on the distance of the dye molecules from each other. The FRET signal can be detected spectrometrically in a static manner using either the donor fluorescence or the acceptor fluorescence or in a time-dependent manner using the donor fluorescence.
2. The sensitive material is linked covalently, at comparatively high concentration, to a fluorescent dye (mass of material:mass of dye <500:1). The dye is distinguished by the fact that it readily forms dimers/aggregates with itself. If the labeled material is introduced into a capsule wall as at least one homogeneous layer having a thickness of from 1 nm to 1 μm, a self-quenching process in connection with the formation of dimers or H aggregates leads to the fluorescence of the dye monomers being quenched whereas a new emission band at lower energy arises when J aggregates or excimers are formed. When the layer in the capsule wall swells/shrinks, the signal can be detected by way of the intensity or lifetime of the monomer fluorescence or by way of the ratio of monomer fluorescence to the fluorescence of the J aggregate or excimers.
In general, the capsules according to the invention, which preferably have a diameter of less than 100 μm, possess an envelope which is composed of at least three polyelectrolyte layers, with one of the three polyelectrolyte layers being labeled with at least one dye. This dye, which can be a fluorescent dye or emitting (fluorescent) nanoparticles (particles having a size of preferably less than 1 nm), serves, for example, for identifying the capsules. In this case, the capsules are used for labeling or coding industrial products, particles, cells, tissues, organs or organisms of biological origin such that the provenance of the latter can be established and identified on the basis of the fluorescence of the dye. On the other hand, the capsules can also be used as sensors which react measurably to altered environmental conditions by altering the fluorescence of the dye. Finally, the capsules can also be used as “capturing receptacles” in order to remove substances from solutions and/or identify them. Capsules which are labeled with different dyes and which in each case react specifically with a different substance, for example by means of specific binding sites, are suitable for use as a library of reporter particles for identifying substances and/or labeling processes. It lies within the scope of the invention to combine these applications with each other.
Within the scope of the invention, “polyelectrolytes” are understood as being, in particular, water-soluble molecules or aggregates which carry at least 2 charges, preferably even at least three charges. Substantially more charges are even present in the case of many polyelectrolytes. Within the scope of the invention, the polyelectrolytes include, in particular, organic polyelectrolytes, nanoparticles, polyampholytes and compounds and complexes which are composed of organic polyelectrolytes and low molecular weight substances, e.g. surfactants.
The polyelectrolyte layers are, in particular, layers which essentially have the thickness of about one monolayer of the corresponding polyelectrolyte. Such polyelectrolyte layers can, for example, be applied using layer-by-layer methods. In these methods, polyelectrolytes of alternating polarity are applied, with polyelectrolytes accumulating on existing polyelectrolyte layers until the charges on the already existing layer are saturated.
Multilayer polyelectrolyte capsules, which can also consist of different polyelectrolyte layers, can be prepared, for example, in accordance with the layer-by-layer method which is described in DE 198 12 083 A1, DE 199 07 552 A1, EP 98 113 181, WO/47252 and U.S. Pat. No. 6,479,146, the entire disclosure content of which is hereby incorporated by reference.
Insofar as the capsules are used as sensors, two of the three envelope layers can, for example, in each case be labeled with a different dye. The third polyelectrolyte layer, which is not labeled with fluorescent dyes, then lies between the two labeled polyelectrolyte layers. As a result, the latter two layers are at a certain distance from each other, which distance corresponds approximately to the thickness, for example from 0.1 nm to 10 nm, of the unlabeled central third layer. In this connection, the thickness of the polyelectrolyte layer depends, inter alia, on the polyelectrolyte which is used. The dyes which are used are selected such that they exhibit different emission and absorption bands, with the emission band of one of the dyes at least partially overlapping the absorption band of the other dye. As a result, radiationless transfers, i.e. a FRET, can take place between the dyes. By this means, the dye possessing the higher absorption energy (acceptor) can pass on its excitation to the other dye (dye possessing lower absorption energy; donor) without the acceptor dye being observed to fluoresce. The radiationless transfer consequently leads to excitation of the donor dye, whose fluorescence can be measured. If the acceptor dye absorbs in the blue and fluoresces in the green, for example, the donor dye should then absorb in the green and, for example, emit in the red. An excitation with blue light then leads, in connection with a radiationless transfer between the dyes, to an observed fluorescence in the red instead of in the green. The efficiency of the radiationless transfer between the dye molecules depends heavily on the distance between the molecules, with this distance being determined by the thickness of the unlabeled third polyelectrolyte layer. If this thickness changes, for example as a reaction to altered environmental conditions, the strength of the coupling between the dye molecules then changes. It is therefore also possible to refer to the layer as being sensitive (sensory intermediate layer). If the distance between the dye molecules is small, a transfer which is virtually radiationless then takes place, i.e. only slight fluorescence of the acceptor dye, but relatively high fluorescence of the donor dye, can be detected. When the distance is increased, the fluorescence of the acceptor dye increases while that of the donor dye decreases. These changes can be measured and serve as a measure of the change in the layer thickness. The environmental conditions whose change leads to a change in the thickness of the unlabeled layer can be the pH, the salt concentration, the temperature, adsorbed components, enzymes, the concentration of a substance, physical parameters, components which affect the solvent or which react with the sensitive layer, and also miscible solvent constituents. Organic polyelectrolytes in particular react sensitively to altered environmental conditions. For example, a change in the temperature leads to a change in the ability of the organic polyelectrolytes to take up water and consequently to a change in the thickness of the layer. An example in this regard is PAH.
In addition to the unlabeled polyelectrolyte layer, further polyelectrolyte layers can be arranged between the dye-labeled polyelectrolyte layers, or else the unlabeled polyelectrolyte layer can itself consist of several polyelectrolyte layers.
However, sensory capsules can also only be labeled with one dye. In this case, the dye is bound, at high concentration, to sensitive material within a polyelectrolyte layer, with the sensitive material being able to react to the altered environmental conditions by an increase or decrease in volume. The high concentration of the dye leads to self-quenching, for example as the result of dimer formation, or to the generation of new emission bands when excimers are formed. In this case, too, these processes depend greatly on the distance between the dye molecules, such that a change in the thickness of the layer also leads to a change in the distance between the dye molecules.
When the capsules are used as “capturing receptacles”, they possess specific binding sites for the molecules which are to be captured. The binding sites can be located in the interior of the capsules or on their envelopes. Capsules possessing different binding sites can be labeled with different dyes such that it is then possible to subsequently sort the capsules on the basis of the fluorescence. In this way, it is possible to selectively isolate substances, e.g. proteins, from solutions.
Labeling Polyelectrolytes with Dyes:
PAH was labeled with the dye derivatives fluorescein isothiocyante and tetramethylrhodamine isothiocyanate and a derivative of CY5. The formulae are depicted in
The absorption and fluorescence spectra of the dyes are shown in
Preparing the Capsules
Silica templates of 3 μm in size were coated with 10 alternating layers of poly(allylamine hydrochloride) (PAH, MW 60 000 g/mol) and poly(styrene sulfonate) (PSS, MW 70 000 g/mol).9 In order to obtain distinguishable walls, differently labeled PAH polymers were used for the coating. Only one layer of the given PAH was used for coloring the capsules. Only in the case of Cy5 were 2 layers used for the labeling; this was because of the lower fluorescence quantum yield and the low dye content. An attempt was made to maintain a certain distance between the different dye layers in order to avoid Förster resonance energy transfer. The following capsules were prepared:
Hollow capsules were obtained by leaching out the silica template with hydrofluoric acid and washing with water.
The capsules were investigated by means of confocal laser scanning microscopy while simultaneously using 3 different channels (
Analysis of the fluorescence intensities along a profile through the capsules provides a quantitative and reliable method for distinguishing between the different capsules. The profiles show the distribution of the fluorescence intensities of different channels for the same capsule.
The fluorescence intensities per dye layer are different for differently colored capsules, a fact which can be attributed to resonance energy effects and different contents of adsorbed material. The resonance energy transfer can be markedly reduced by using several layers between the dye layers. Above a distance of 6 nm (approx. 4 layers), there are virtually no interactions any longer between the dye molecules.
Controlled Förster Resonance Energy Transfer
In order to use fixed distances between the dye molecules for the purpose of protecting trademarks against forgery, capsules were prepared which possessed different distances between the dyes but the same content of dye.
The information encoded in the capsules by two dyes can be determined by using two different excitation wavelengths and measuring fluorescence at two different wavelengths. In the case of the rhodamine/fluorescein system this means:
Each of the capsule types prepared gives a specific ratio between signal 1:signal 2:signal 3. For measuring small differences in the signal intensity, these two dyes are already sufficient for realizing a large number of coding possibilities. However, the number of the dyes in capsules can be up to 7.
Using Förster Resonance Energy Transfer for Sensory Applications
Capsules 2 and 3 from table 1 were used for the sensor applications. We found that, depending on chain length, PAH/PSS layers swell strongly or shrink when solutions of quaternary alkyl ammonium salts are added. (PAH/PSS)5 capsules are found to swell strongly, from 3 μm up to 5.7-6.0 μm, when a 0.05 M solution of dodecyltrimethylanmonium bromide (DODAB) is added. When the capsule diameter is doubled, the distance between the dye layers will also double, when the layers swell isotropically, whereas the volume of a layer increases by a factor of 8.
Capsule 2 was used in experiment 1. The concentration of rhodamine and fluorescein in the capsule wall was determined UV/VIS-spectroscopically before and after the swelling process. The mean distance between the two dye layers was about 4.5, nm before the treatment and almost 9 nm after the treatment. The change in the FRET signal (λexc=495 nm, λem=578 nm) was monitored during the swelling process using a fluorescence spectrometer (
Capsule type 3 was used in experiment 2. An efficient quenching process occurs as a result of the high concentration of fluorescein in the one PAH layer. After 0.05 M DODAB solution has been added, the volume of the PAH layer increases by about a factor of 8. As a result of the decrease in the self-quenching of the dye, the fluorescence of the capsules thereby increases by 290% (
Filling the Capsules with Reactive Macromolecules:
There are three different ways for immobilizing macromolecules in the interior of the capsules:
Other advantageous embodiments of the capsules according to the invention, and of their use, are cited below, with it being possible to combine all the embodiments with each other at will:
FIGS. 1 to 10 show various embodiments of the invention.
a) shows the absorption spectrum (normalized intensity), and
a) in water, and
b) after a 0.05 M DODAB solution has had its effect. (green absorption of the fluorescein at 495 nm, red absorption of the rhodamine at 553 nm, and blue FRET signal λexc=495 nm, λem=578 nm)
In comparison, the fluorescence intensity of capsules No. 3 following the addition of 0.05 M DODAB is depicted in
Number | Date | Country | Kind |
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10236409.5 | Aug 2002 | DE | national |
10315846.4 | Apr 2003 | DE | national |
Filing Document | Filing Date | Country | Kind | 371c Date |
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PCT/EP03/08376 | 7/29/2003 | WO | 8/11/2005 |