a: Mice were injected either with β-galactosidase, emulsified in Freund's adjuvant, or mRNA which codes for β-galactosidase, or injection buffer (as a negative control). GM-CSF (total amount of 2 μg of recombinant protein: approx. 104 U (units)) were injected once, either 24 hours or 2 hours before injection of the mRNA or 24 hours after injection of the mRNA (corresponds to groups GM-CSF T−1, GM-CSF T−0 and GM-CSF T+1). The amount of β-galactosidase-specific IgG1 or IgG2a antibodies contained in the blood of the injected mice was determined by ELISA (1:10 serum dilution). The background which was chiefly obtained by the serum of buffer-injected mice at the same dilution was subtracted. The left half of
b: The in vitro reactivation of T cells by β-galactosidase was checked with the aid of a cytokine detection on day 4 of the culture. The content of IFNγ (▪) and IL-4 (, grey) in the supernatant of the splenocyte culture used was measured by means of ELISA.
c: The cytotoxic activity of splenocytes which were cultured in the presence of purified β-galactosidase for six days was checked in a chromium release assay. The target cells were P815 (H2d) cells, which were either charged (▪) with the synthetic peptide TPHPARIGL, which corresponds to the dominant H2-Ld epitope of β-galactosidase, or were not charged (□).
The following examples are intended to illustrate the invention further. They are not intended to limit the subject matter of the inventions thereto.
The mRNA was obtained by in vitro transcription of suitable template DNA and subsequent extraction and purification of the mRNA. Standard methods which are described in numerous instances in the prior art and with which the person skilled in the art is familiar can be used for this. For example, Maniatis et al. (2001), Molecular Cloning: Laboratory Manual, Cold Spring Harbour Laboratory Press. The same also applies to the sequencing of the mRNA, which followed the purification (described below) of the mRNA. The NBLAST program in particular was used here.
The mRNA according to the invention was generally prepared in accordance with the following procedure:
The genes for which the particular mRNA codes were inserted into the plasmid vector pT7TS. pT7TS contains untranslated regions of the alpha- or beta-globin gene and a polyA tail of 70 nucleotides:
Plasmids of high purity were obtained with the Qiagen Endo-free Maxipreparation Kit or with the Machery-Nagel GigaPrep Kit. The sequence of the vector was checked via a double-strand sequencing from the T7 promoter up to the PstI or XbaI site and documented. Plasmids in which the gene sequence cloned in was correct and without mutations were used for the in vitro transcription.
The genes for which the mRNA according to the invention codes were amplified by means of PCR or extracted from the plasmids (described above). Examples of gene constructs which were employed are
GP100 (accession number M77348): PCR fragment SpeI in T7TS HinDIII blunt/SpeI
MAGE-A1 (accession number M77481): plasmid fragment HinDIII/SpeI in T7TS HinDIII/SpeI
MAGE-A6 (accession number: NM—005363): PCR fragment SpeI in T7TS HinDIIIblunt/SpeI
Her2/neu (accession number: M11730): PCR fragment HinDIII/SpeI in T7TS HinDIII/SpeI
Tyrosinase (accession number: NM—000372): plasmid fragment EcoRI blunt in T7TS HinDIII blunt/SpeI blunt
Melan-A (accession number: NM—005511): plasmid fragment NotI blunt in T7TS HindIII blunt/SpeI blunt
CEA (accession number: NM—004363): PCR fragment HinDIII/SpeI in T7TS HinDIII/SpeI
Tert (accession number: NM—003219): PCR fragment HindIII/SpeI in T7TS HinDIII/SpeI
WT1 (accession number: NM—000378): plasmid fragment EcoRV/KpnI blunt in T7TS HinDIII blunt/SpeI blunt
PR3 (accession number: NM—002777): plasmid fragment EcoR1 blunt/Xbal in T7TS HinDIII blunt/SpeI
PRAME (accession number: NM—006115): plasmid fragment BamH1 blunt/XbaI in T7TS HinDIII blunt/SpeI
Survivin (accession number AF077350): PCR fragment HinDIII/SpeI in T7TS HinDIII/SpeI
Mucin1 (accession number NM—002456): plasmid fragment: SacI blunt/BamHI in T7TS HinDIII blunt/BglII
Tenascin (accession number X78565): PCR fragment BglII blunt/SpeI in T7TS HinDIII blunt/SpeI
EGFR1 (accession number AF288738): PCR fragment HinDIII/Spel in T7TS HinDIII/Spe I
Sox9 (accession number Z46629): PCR fragment HinDIII/Spel in T7TS HinDIII/SpeI
Sec61G (accession number NM—014302): PCR fragment HinDIII/Spel in T7TS HinDIII/SpeI
PTRZ1 (accession number NM—002851): PCR fragment EcoRV/SpeI in T7TS HinDIII blunt/SpeI
500 μg of each of the plasmids described above were linearized in a volume of 2.5 ml by digestion with the restriction enzyme PstI or XbaI in a 15 ml Falcon tube. This cleaved DNA construct was transferred into the RNA production unit. 2.5 ml of a mixture of phenol/chloroform/ isoamyl alcohol were added to the linearized DNA. The reaction vessel was vortexed for 2 minutes and centrifuged at 4,000 rpm for 5 minutes. The aqueous phase was removed and mixed with 1.75 ml 2-propanol in a 15 ml Falcon tube. This vessel was centrifuged at 4,000 rpm for 30 minutes, the supernatant was discarded and 5 ml 75% ethanol were added. The reaction vessel was centrifuged at 4,000 rpm for 10 minutes and the ethanol was removed. The vessel was centrifuged for a further 2 minutes and the residues of the ethanol were removed with a microlitre pipette tip. The DNA pellet was then dissolved in 500 μl RNase-free water (1 μg/μl).
T7 polymerase: purified from an E. coli strain which contains a plasmid with the gene for the polymerase. This RNA polymerase uses as the substrate only T7 phage promoter sequences (Fermentas),
NTPs: synthesized chemically and purified via HPLC. Purity more than 96% (Fermentas),
CAP analogue: synthesized chemically and purified via HPLC. Purity more than 90% (Trilink),
RNase inhibitor: RNasin, injectable grade, prepared by a recombinant method (E. coli) (Fermentas),
DNase: distributed as a medicament via pharmacies as Pulmozym® (dornase alfa) (Roche).
The following reaction mixture was pipetted into a 15 ml Falcon tube:
The total volume was 2 ml and was incubated at 37° C. for 2 hours in a heating block. Thereafter, 300 μl DNase: Pulmozyme™ (1 U/μl) were added and the mixture was incubated at 37° C. for a further 30 minutes. The DNA template was enzymatically degraded by this procedure.
Based on 20-40 μg RNA, this was carried out as follows:
30 μl WFI (water for injection) were added to the transcription batch (20 μl) and the components were mixed carefully. 25 μl LiCl solution were added to the reaction vessel and the solutions were vortexed for at least 10 seconds. The batch was incubated at −20° C. for at least 1 hour. The closed vessel was then centrifuged at 4,000 rpm for 30 minutes at 4° C. The supernatant was discarded.
5 μl 75% ethanol were added to each pellet (under a safety workbench). The closed vessels were centrifuged at 4,000 rpm for 20 minutes at 4° C. The supernatant was discarded (under a safety workbench) and centrifugation was carried out again at 4,000 rpm for 2 minutes at 4° C. The supernatant was carefully removed with a pipette (under a safety workbench). Thereafter, the pellet was dried for approx. 1 hour (under a safety workbench).
In each case 10 μl WFI were added to the thoroughly dried pellets (under a safety workbench). The particular pellet was then dissolved in a shaking apparatus overnight at 4° C.
The final purification was carried out by phenol/chloroform extraction. However, it can likewise be carried out by means of anion exchange chromatography (e.g. MEGAclear™ from Ambion or Rneasy from Qiagen). After this purification of the mRNA, the RNA was precipitated against isopropanol and NaCl (1 M NaCl 1:10, isopropanol 1:1), vortexed, and centrifuged at 4,000 rpm for 30 min at 4° C,, and the pellet was washed with 75% ethanol. The RNA purified by means of phenol/chloroform extraction was dissolved in RNase-free water and incubated at 4° C. for at least 12 hours. The concentration of each mRNA was measured at OD260 absorption. (The chloroform/phenol extraction was carried out in accordance with Sambrook J., Fritsch E. F., and Maniatis T., in Molecular Cloning: A Laboratory Manual, Cold Spring Harbor Laboratory Press, NY, vol. 1, 2, 3 (1989)).
An example of an embodiment of the stabilized mRNA according to the invention relates to a β-globin UTR-stabilized mRNA. An mRNA stabilized in this manner had the following structure: cap-β-globin UTR (80 bases)-β-galactosidase coding sequence-β-globin 3′-UTR (approx. 180 bases)-poly A tail (A30C30). Instead of the β-galactosidase coding sequence, constructs which had a sequence which codes for an antigen from a pathogen or tumour already described above were likewise produced.
As a further example of an embodiment of the stabilized mRNA according to the invention, the nucleic acid sequence of the coding region of the mRNA was optimized in respect of its G/C content. To determine the sequence of a modified mRNA according to the invention, the computer program described in WO 02/098443 was used, which, with the aid of the genetic code or the degenerative nature thereof, modifies the nucleotide sequence of any desired mRNA such that a maximum G/C content results, in combination with the use of codons which code for tRNAs occurring as frequently as possible in the cell, the amino acid sequence coded by the modified mRNA preferably being identical to the non-modified sequence. Alternatively, it is also possible to modify only the G/C content or only the codon usage compared with the original sequence. The source code in Visual Basic 6.0 (development environment used: Microsoft Visual Studio Enterprise 6.0 with Servicepack 3) is likewise described in WO 02/098443, the disclosure of which is subject matter of the present invention.
P815 cells were supplemented with 10% heat-inactivated foetal calf serum (PAN systems, Germany), 2 mM L-glutamine, 100 U/ml penicillin and 100 μg/ml streptomycin and cultured in an RPMI 1640 (Bio-Whittaker, Verviers, Belgium). The CTL culture was carried out in RPMI 1640 medium, supplemented with 10% FCS, 2 mM L-glutamine, 100 U/ml penicillin, 100 μg/ml streptomycin, 50 μM β-mercaptoethanol, 50 μg/ml gentamycin, 1× MEM non-essential amino acids and 1 mM sodium pyruvate. The CTLs were restimulated for one week with 1 μg/ml β-galactosidase (Sigma, Taufkirchen, Germany). On day 4, the supernatants were carefully collected and replaced by fresh medium containing 10 U/ml rIL-2 (final concentration).
In parallel experimental set-ups, the restimulation was carried out with in each case 1.3 μg/ml survivin, 1 μg MAGE-3 and 0.8 μg Muc-1. All the other conditions in these experimental set-ups were identical to the conditions described above.
Female BALB/c AnNCrlBR (H-2d) mice 6 to 12 weeks old were obtained from Charles River (Sulzfeld, Germany). Approval for the genetic (DNA and mRNA) vaccination of the mice was granted by the Committee for Animal Ethics in Tübingen (number IM/200). The BALB mice were anaesthetized with 20 mg pentobarbital intraperitoneally. The mice were then injected intradermally in both ear pinnae with 25 μg β-globin UTR-stabilized mRNA coding for β-galactosidase, which was diluted with injection buffer (150 mM NaCl, 10 mM HEPES). 5·103 units (1 μg) of GM-CSF (Peprotech, Inc., Rocky Hill, N.Y., USA), diluted with 25 μl PBS, were subsequently injected. This corresponded to a total amount of 2 μg (approx. 104 units), which was injected only once. Such a dosage lies in the lowest range of the dosages normally chosen in mice (26). Two weeks after the first injection, the mice were treated under the same conditions (as with the first injection).
In parallel experimental set-ups I, II+III, which were carried out under the same conditions described above, mice were injected with, instead of 25 μg β-globin UTR-stabilized mRNA which coded for β-galactosidase and 1 μg pg GM-CSF, in
GM-CSF (total amount of 2 μg of recombinant protein: approx. 104 U (units)) were injected once, either 24 hours or 2 hours before injection of the mRNA or 24 hours after injection of the mRNA (corresponds to groups GM-CSF T−1, GM-CSF T−0 and GM-CSF T+1). The amount of β-galactosidase-specific IgG1 or IgG2a antibodies contained in the blood of the injected mice was determined by ELISA (1:10 serum dilution). The background, which was chiefly obtained by the serum of buffer-injected mice at the same dilution, was subtracted.
Splenocytes were stimulated in vitro with purified β-galactosidase (1 mg/ml) and the CTL activity was determined after 6 days using a standard 51Cr release assay (as described, for example, by Rammensee et al. (1989), Immunogenetics 30: 296-302). The death rate of the cells was determined with the aid of the amount of 51Cr released into the medium (A) compared with the amount of spontaneous 51Cr release of the target cells (B) and the total content of 51Cr of target cells lysed with 1% Triton-X-100 (C) by means of the formula
% cell lysis=(A−B)÷(C−B)×100
Stimulation of the splenocytes with survivin, MAGE-3 and Muc-1 (concentration in each case 1 mg/ml) was carried out in parallel experimental set-ups. All the other conditions in these experimental set-ups were identical to the conditions described above.
MaxiSorb plates from Nalgene Nunc International (Nalge, Denmark) were coated overnight at 4° C. with 100 μl β-galactosidase at a concentration of 100 μg/ml (antibody ELISA) or with 50 μl of anti-mouse anti-IFN-γ or -IL-4 (cytokine ELISA) capture antibodies (Becton Dickinson, Heidelberg, Germany) at a concentration of 1 μg/ml in coating buffer (0.02% NaN3, 15 mM Na2CO3, 15 mM NaHCO3, pH 9.6). The plates were then saturated for 2 hours at 37° C. with 200 μl of blocking buffer (PBS-0.05% Tween 20-1% BSA). They were subsequently incubated at 37° C. for 4 to 5 days with sera (antibody ELISA) at 1:10, 1:30 and 1:90 dilutions in washing buffer or 100 μl of the cell culture supernatant (cytokine ELISA). 100 μl of 1:1,000 dilutions of goat anti-mouse IgG1 or IgG2a antibodies (antibody ELISA) from Caltag (Burlington, Calif., USA) or 100 μl/well of biotinylated anti-mouse anti-IFN-γ or -IL-4 (cytokine ELISA) detection antibodies (Becton Dickinson, Heidelberg, Germany) at a concentration of 0.5 μg/ml in blocking buffer were then added and the plates were incubated at room temperature for 1 hour.
For the cytokine ELISA, after 3 washing steps with washing buffer, 100 μl of a 1:1,000 dilution of streptavidin-HRP (BD Biosciences, Heidelberg, Germany) were added per well. After 30 minutes at room temperature, 100 μl ABTS (2,2′-azino-bis-(3-ethylbenzothiazoline-6-sulfonic acid) concentrate at a concentration of 300 mg/l in 0.1 M citric acid, pH 4.35) were added per well. After a further 15 to 30 min at room temperature, the extinction at OD405 was measured with a Sunrise ELISA Reader from Tecan (Crailsheim, Germany). The amounts of the cytokines were calculated with the aid of a standard curve plotted by titration of certain amounts of recombinant cytokines (BD Pharmingen, Heidelberg, Germany).
In parallel experimental set-ups, the MaxiSorb plates were coated with survivin, MAGE-3 and Muc-1 (in each case 100 μl). All the other conditions in these parallel experimental set-ups were identical to the conditions described above.
Female BALB/c AnNCrlBR (H-2d) mice 6 to 12 weeks old (Charles River, Sulzfeld, Germany) BALB mice were anaesthetized with 20 mg pentobarbital intraperitoneally analogously to Example 4 (see above). The mice were then injected intradermally in both ear pinnae with 25 μg of β-globin UTR-stabilized mRNA coding for β-galactosidase, which was diluted with injection buffer (150 mM NaCl, 10 mM HEPES). 50 μg GM-CSF RNA were subsequently injected once into the ear pinnae. Two weeks after the first injection, the mice were treated under the same conditions (as with the first injection).
In parallel experimental set-ups I, II, III, IV and V, which were carried out under the same conditions described above, mice were, in
Maxi Sorb plates from Nalgene Nunc International (Nalge Denmark) were plated out overnight at 4° C. with 50 ml of an anti-mouse anti-interferon-γ(IFN-γ) antibody with 1 mg/ml in a coating buffer (0.02% NaN3, 15 mM Na2CO3, 15 mM NaHCO3, pH 6.6). The plates were then saturated with 200 ml of the blocking buffer (PBS-0.05% Tween 20-1% BSA) for 2 hours at 37° C. and then incubated at 37° C. for 4-5 h with 100 ml of the cell culture supernatant (cytokine ELISA). 100 μl of 1:1,000 dilutions of 100 μl per well of the biotinylated anti-mouse anti-IFN-γ detection antibody (Becton Dickinson) were added at 0.5 mg/ml in a blocking buffer and incubation was carried out at room temperature for one hour. After 3 washing steps with washing buffer, 100 ml of a 1 to 1,000 dilution of streptavidin-HRP (horseradish peroxidase, BD Biosciences, Heidelberg, Germany) were added per well. After 30 minutes at room temperature, 100 ml per well of ABTS (300 mg/l 2,2-azino-bis-(3-ethylbenzothiazoline-6-sulfonic acid) in 0.1 M citrate, pH 4.35) substrate were added. After 15 to 30 minutes at room temperature, the extinction at OD405 was measured with a Sunrise ELISA reading apparatus from Tecan (Crailsheim, Germany) and the amounts of the cytokine were calculated from a standard curve which was obtained by titration with certain amounts of recombinant cytokines (BD Pharmingen, Heidelberg, Germany). It can be clearly seen that the immunostimulation is significantly increased by administration of GM-CSF mRNA before, at about the same time as and after injection of β-galactosidase mRNA.
Number | Date | Country | Kind |
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10 2004 042 546 9 | Sep 2004 | DE | national |
Filing Document | Filing Date | Country | Kind | 371c Date |
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PCT/EP05/09383 | 8/31/2005 | WO | 00 | 9/29/2006 |