Compositions and methods for detecting viruses in a sample

FIELD OF THE INVENTION

The present disclosure provides a composition comprising a panel of probes for detecting one or more viruses in a sample. The panel of probes may be used to detect viruses in a biological sample obtained from a subject.

BACKGROUND OF THE INVENTION

High-throughput, massively parallel nucleotide sequence analysis has made in-depth studies of the human microbiome feasible. Thus far, most microbiome studies have focused on bacteria, although some include fungi. Viruses are particularly understudied, in part due to the challenges of assessing their presence in clinical samples. Viruses as a group have highly variable genomes, with no gene shared among all viruses that can be surveyed by an amplicon-based sequencing strategy. Therefore, studies of viruses based on nucleotide sequencing require a metagenomic approach. Metagenomic shotgun sequencing (MSS) is a relatively unbiased, culture-independent method in which nucleic acid extracted from a sample is sequenced. Sequence reads are classified based on similarity to reference genomes. This approach allows comprehensive study of the viral component of the microbiome (the virome) and has led to the discovery of novel viruses and the characterization of viruses present in healthy and sick people. When adequate numbers of sequence reads are generated, viruses can be characterized with regard to taxonomy and the presence of genes associated with virulence and resistance to antiviral drugs.

A limitation of MSS as employed to date for virus detection is that the amount and proportion of viral nucleic acid in samples from humans may be very low, and in these cases, few viral sequences are generated. Additionally, it has been shown that viruses known to be present based on molecular assays are undetectable using MSS. These difficulties may reflect the small genome size of some viruses and/or low levels of virus in the sample. This can be a particular problem for studies of the virome of healthy, asymptomatic individuals, in whom virus levels may be low. Thus, there is a need for a method of enriching viral sequences in a metagenomic sample prior to sequencing.

SUMMARY OF THE INVENTION

In an aspect, the disclosure provides a method to detect one or more viruses in a sample. The method comprises: a) contacting a sample with a panel comprising probes capable of specifically hybridizing to greater than 10,000 viral nucleic acid sequences; b) isolating the probes that specifically hybridize to viral nucleic acid sequences within the sample; c) sequencing the viral nucleic acid sequences isolated; and d) comparing the sequences from (c) with a database comprising reference viral nucleic acid sequences to determine the identity of the viral nucleic acid in the sample.

In another aspect, the disclosure provides a kit for detecting viral nucleic acid. The kit comprises probes capable of specifically hybridizing to greater than 10,000 viral nucleic acid sequences.

In still another aspect, the disclosure provides a cohort of viral nucleic acid sequences. The cohort of viral nucleic acid sequences comprises viral nucleic acid sequences from NCBI's RefSeq collection, complementary representation of unique regions from Genome Neighbor targets, selected representation of NCBI Influenza Virus Resource sequences, and the entirety of the probe space represented on the Virochip microarray, GEO accession number GPL15905.

BRIEF DESCRIPTION OF THE FIGURES

The application file contains at least one drawing executed in color. Copies of this patent application publication with color drawing(s) will be provided by the Office upon request and payment of the necessary fee.

FIG. 1 depicts the taxonomic distribution of target genomes included in ViroCap. Shown are the viral groups and families included in the ViroCap targeted sequence capture panel. A highlighted subset illustrates underlying genera. To view complete genera for all families, see FIG. 4A. Taxonomic assignments were obtained from the NCBI Taxonomy Viewer (www.ncbi.nlm.nih.gov/genomes/GenomesGroup.cgi?opt=virus&taxid=10239).

FIG. 2A, FIG. 2B, FIG. 2C, FIG. 2D, FIG. 2E, FIG. 2F, FIG. 2G, and FIG. 2H depict targeted sequence capture enrichment. Examples are given showing the impact of targeted sequence capture on breadth and depth of genome coverage for eight representative viral genomes. For illustrative purposes, all of the coverage panels in this figure have been normalized by removing (deduplicating) reads based on identical alignment start-sites. Nucleotide positions along the reference genome are shown on the x-axis. The depth of deduplicated reads is shown on the y-axis. The shaded portion indicates the sequence coverage (breadth and depth) for each virus. Post-capture sequence coverage is represented in the larger panels in blue; precapture sequence coverage is shown in the insets in red. Note that y-axis ranges are different for each panel. At the top of each panel is shown the breadth of coverage (BoC) for the sample. The header of each panel includes breadth of coverage gain (BoC gain), sample id, and reference genome name and NCBI version number. BoC gain is calculated by subtracting the percentage of the length of the reference genome that was covered by sequence reads in precapture MSS from the percentage of the length of the reference genome covered by post-capture sequence reads.

FIG. 3A and FIG. 3B depict targeted sequence capture identifies divergent sequences. (FIG. 3A) The percentage identity of the top high-scoring segment pair (HSP) identified from the BLAST alignment of anellovirus contig sequences to the references used to design ViroCap is plotted on the y-axis. The x-axis represents the percentage of the length of the anellovirus contig covered after targeted sequence capture. (FIG. 3B) This coverage plot represents the sequence coverage of a divergent anellovirus contig sequence. The figure is designed as described in the figure legend for FIG. 2, with the following addition: The post-capture coverage plot is shaded to show regions of nucleotide sequence variation between the anellovirus contig and the most similar reference genome in the ViroCap panel. Dark shading represents areas of identical sequence, and each position with nucleotide mismatch between aligned sequences is shown in the lighter color. All of the HSPs are shown, rather than just the top HSP.

FIG. 4A and FIG. 4B depict the taxonomic distribution of target genomes. (FIG. 4A) Shown are the viral groups, families, and genera included in the ViroCap targeted sequence capture panel. (FIG. 4B) Shown are the viral groups, families and genera included in the samples used in ViroCap validation. Taxonomic assignments for FIG. 4A and FIG. 4B were obtained from the NCBI Taxonomy Viewer (www.ncbi.nlm.nih.gov/genomes/GenomesGroup.cgi?opt=virus&taxid=10239).

FIG. 5 depicts non-viral read classification based on metagenomic shotgun sequencing before and after viral targeted sequence capture. Classifications of non-viral reads were determined based on nucleotide sequence alignment against bacterial and fungal reference genomes, the human genome, NCBI nt, and capture positive control sequences (positive control probes targeting human genes as included by NimbleGen). The percentages of reads per category are shown on the stacked bar charts and in the data table. For each sample, a small percentage of non-viral reads did not map to any of the reference databases evaluated. Proportions of reads mapping to bacteria/fungi, human, and NCBI nt references was similar pre- and post-capture, indicating the viral capture probes did not consistently or strikingly enrich any other class of organisms expected to be found in these samples. As expected, the positive controls were enriched post-capture in each case.

FIG. 6 depicts human chromosome identities based on metagenomic shotgun sequencing before and after viral targeted sequence capture. The proportions of sequences mapping to each human chromosome and mitochondria are plotted. Viral capture probes did not enrich sequences from human chromosomes. The percentages of human-mapped reads are shown on the stacked bar graphs and in the data table (Table 11).

FIG. 7A, FIG. 7B, FIG. 7C and FIG. 7D depict Genome Neighbor target sequence selection. The general approach for Genome Neighbor target sequence selection is illustrated. While this process is performed on all viral RefSeqs, here we illustrate a small genomic region of a single RefSeq and Genome Neighbor pairing. First, all Genome Neighbor sequences related to a single RefSeq entry are located and associated. In this example, the single Genome Neighbor sequence shown, when compared to RefSeq, has a 100 bp span of alternative sequence (FIG. 7A). The Genome Neighbor sequence is used to generate k-mers of length 100 bp (i.e. capture probe analogs) by means of an exhaustive 1 bp sliding window algorithm, retaining genomic coordinate origin information for each k-mer (FIG. 7A). The resultant set of 100-mers accounts for all potential target sequences that could be used to capture this region. In this example, when comparing Genome Neighbor 100-mers to the corresponding RefSeq genome there is one 100-mer that is completely variant compared to RefSeq, and a set of other 100-mers containing both variant and conserved regions across their lengths due to the nature of the sliding window effect (FIG. 7B). We identify 100-mers that are not represented in the RefSeq genome by sequence clustering (FIG. 7C). Any 100-mers that have >=90% identity to the RefSeq genome are not added to the capture target sequence (Cluster 1, labeled within the figure as “Discarded”). Sequences with <90% identity to RefSeq will form clusters representing variant sequences (Clusters 2-10, labeled within the figure as “Retained”). 100-mers from the variant, non-RefSeq clusters are collected and merged based on genomic coordinates into single, contiguous Genome Neighbor sequence representations used for targeted sequence capture (FIG. 7D).

DETAILED DESCRIPTION OF THE INVENTION

The inventors have designed a panel of probes that specifically hybridize to viral nucleic acid sequences (referred to herein as “the ViroCap panel”) to enhance the sensitivity of metagenomic shotgun sequencing (MSS) for comprehensive detection of known vertebrate viruses, as well as to detect divergent viruses that have nucleotide sequence similarities to known viruses. The inventors have demonstrated that targeted sequence capture using ViroCap dramatically increases the amount of viral sequence obtained from human samples compared with conventional MSS, greatly enhancing the resolution of genomic characterization and increasing the number of viruses detected by >50%. Enhancement was demonstrated for DNA and RNA viruses from multiple diverse families. The increased sensitivity will be valuable in multiple research applications, including descriptions of the human virome, and will also improve the potential for MSS as a diagnostic tool in human and animal health.

The dramatic enrichment of viral nucleic acids present within the targeted sequence capture libraries offers important advantages. First, as the inventors demonstrate, MSS with ViroCap can be used to generate complete or nearly complete genome sequences directly from clinical samples, including those with very low proportions of viral nucleic acid, without culturing the viruses. Availability of extensive sequence data provides the opportunity to distinguish among closely related virus subtypes or even among viral strains, which might not be distinguished by other types of assays. Second, the use of ViroCap can reduce the depth of sequencing needed to detect viruses in samples. Because targeted sequence capture results in a large increase in the percentage of sequencing reads that are viral, ViroCap achieves better viral coverage while requiring the generation of fewer total sequence reads. This increased efficiency has the potential to lower sequencing costs.

I. Methods

The present disclosure provides a method to detect one or more viruses in a sample. The sample may be a sample from a subject, the environment, a laboratory, or any sample in which nucleic acid is present. When the sample is from a subject, the sample may be from a nasopharyngeal swab stool, sputum, urine, plasma, peripheral blood, serum, bone marrow, tissue, and other bodily fluids. In a specific embodiment, the sample is selected from the group consisting of nasopharyngeal swab, stool and plasma. The tissue sample may be a tissue biopsy. The biopsied tissue may be fixed, embedded in paraffin or plastic, and sectioned, or the biopsied tissue may be frozen and cryosectioned. Alternatively, the biopsied tissue may be processed into individual cells or an explant, or processed into a homogenate, a cell extract, a membranous fraction, or a protein extract.

The sample may be used “as is”, processed for cell lysis or disruption of viral particles, or the nucleic acid may be purified from the sample prior to sample preparation. Methods of isolating nucleic acid from a sample are known in the art. In certain embodiments, the isolated nucleic acid is reverse transcribed an amplified after isolation. This allows detection of both RNA and DNA viruses. Specifically, RNA in the total nucleic acid may be reverse transcribed with reverse transcriptase. Random nonomers may then be tagged with a conserved sequence to be used for subsequent amplification. Second strand synthesis may then be carried out using DNA polymerase to generate cDNA for the RNA viruses.

The DNA/cDNA mixture may then be amplified using DNA polymerase. In general, amplification is carried out using polymerase chain reaction (PCR). A PCR reaction may comprise nucleic acid, primers, polymerase, water, buffer, and deoxynucleotide triphosphates (dNTPs). PCR may be performed according to standard methods in the art. By way of non-limiting example, the PCR reaction may comprise denaturation, followed by about 5-10 cycles of denaturation, annealing and extension, followed by a final extension. In an exemplary embodiment, the PCR reaction comprises denaturation at about 98° C. for about 30 seconds, followed by about 5 to about 10 cycles of (about 98° C. for about 10 seconds, about 62-72° C. for about 30 seconds, about 72° C. for about 30 seconds), followed by a final extension at about 72° C. for about 5 minutes. Optionally, the amplified nucleic acid is then purified, for example, via column purification. The nucleic acid in the sample may then be sheared via methods known in the art to generate fragments. The fragments may be about 100 to about 2000 bp. For example, the fragments may be about 200 to about 1500 bp, about 400 to about 1000 bp, about 400 to about 800 bp, or about 500 bp.

If a sample is from a subject, the subject may be a rodent, a human, a livestock animal, a companion animal, a zoological animal, or an invertebrate vector. In one embodiment, the subject may be a rodent, e.g. a mouse, a rat, a guinea pig, etc. In another embodiment, the subject may be a livestock animal. Non-limiting examples of suitable livestock animals may include pigs, cows, horses, goats, sheep, llamas and alpacas. In still another embodiment, the subject may be a companion animal. Non-limiting examples of companion animals may include pets such as dogs, cats, rabbits, and birds. In yet another embodiment, the subject may be a zoological animal. As used herein, a “zoological animal” refers to an animal that may be found in a zoo. Such animals may include non-human primates, large cats, wolves, and bears. Non-limiting examples of suitable invertebrate vectors include mosquitoes, ticks, flies, and lice. In a preferred embodiment, the subject is a human.

A method of the disclosure comprises, in part, contacting a sample with a panel comprising probes capable of specifically hybridizing to greater than 10,000 viral nucleic acid sequences. As used herein, a “probe” is a nucleic acid probe, such as an oligonucleotide of at least 15, 30, 50, 100, 250, 500, 750 or more nucleotides in length, that specifically hybridizes under stringent conditions to a viral nucleic acid. For example, high stringency conditions, such as high hybridization temperature and low salt in hybridization buffers, permit only hybridization between nucleic acid sequences that are highly similar. In a specific embodiment, the probes may be about 50 to about 105 base pairs (bp). In another specific embodiment, the probes may be about 100 bp.

The probes for inclusion in the panel are designed based on a cohort of viral nucleic acid sequences. The cohort of viral nucleic acid sequences may be designed as set forth in the Examples. Specifically, the cohort of viral nucleic acid sequences comprises viral nucleic acid sequences from NCBI's RefSeq collection, complementary representation of unique regions from Genome Neighbor targets, selected representation of NCBI Influenza Virus Resource sequences, and the entirety of the probe space represented on the Virochip microarray (Yu et al. 2012), GEO accession number GPL15905. The cohort of viral nucleic acid sequences comprises viral nucleic acid sequences from all DNA and RNA viruses with sequenced genomes from vertebrate hosts, excluding human endogenous retroviruses and bacteriophages. The cohort of viral nucleic acid sequences comprises more than 150,000, more than 160,000, more than 170,000, or more than 180,000 viral nucleic acid sequences. Specifically, the cohort of viral nucleic acid sequences comprises 185,835 viral nucleic acid sequences. The cohort of viral nucleic acid sequences comprises greater than 150 Mb, greater than 160 Mb, greater than 170 Mb, greater than 180 Mb, or greater than 190 Mb of viral nucleic acid sequences. Specifically, the cohort of viral nucleic acid sequences comprises 198.9 Mb of viral nucleic acid sequences. Even more specifically, the cohort of viral nucleic acid sequences comprises about 27 Mb of viral nucleic acid sequences from RefSeq, about 153 Mb of viral nucleic acid sequences from Genome Neighbor targets, about 16 Mb from Influenza Virus Resource sequences, and about 3 Mb of viral nucleic acid sequences from Virochip microarray. The cohort of viral nucleic acid sequences is used to design a panel of probes that specifically hybridize to the viral nucleic acid sequences of the cohort of viral nucleic acid sequences.

A panel of the disclosure comprises greater than 1×10⁴probes capable of specifically hybridizing to the viral nucleic acid sequences of the cohort of viral nucleic acid sequences. For example, a panel of the disclosure comprises greater than 1×10⁴probes, greater than 2×10⁴probes, greater than 3×10⁴probes, greater than 4×10⁴probes, greater than 5×10⁴probes, greater than 6×10⁴probes, greater than 7×10⁴probes, greater than 8×10⁴probes, greater than 9×10⁴probes, greater than 1×10⁵probes, greater than 2×10⁵probes, greater than 3×10⁵probes, greater than 4×10⁵probes, greater than 5×10⁵probes, greater than 6×10⁵probes, greater than 7×10⁵probes, greater than 8×10⁵probes, greater than 9×10⁵probes, greater than 1×10⁶probes, greater than 2×10⁶probes, greater than 3×10⁶probes, greater than 4×10⁶probes, greater than 5×10⁶probes, greater than 6×10⁶probes, greater than 7×10⁶probes, greater than 8×10⁶probes, greater than 9×10⁶probes, or greater than 1×10⁷probes capable of specifically hybridizing to the viral nucleic acid sequences of the cohort of viral nucleic acid sequences. In a specific embodiment, a panel of the disclosure comprises about 2×10⁶probes capable of specifically hybridizing to the viral nucleic acid sequences of the cohort of viral nucleic acid sequences.

A panel of the disclosure comprises probes capable of specifically hybridizing to greater than 10,000 viral nucleic acid sequences. For example, a panel of the disclosure comprises probes capable of specifically hybridizing to greater than 10,000, greater than 15,000, greater than 20,000, greater than 25,000, greater than 30,000, greater than 35,000, greater than 40,000, greater than 45,000, greater than 50,000, greater than 55,000, greater than 60,000, greater than 65,000, greater than 70,000, greater than 75,000, greater than 80,000, greater than 85,000, greater than 90,000, greater than 95,000, greater than 100,000, greater than 110,000, greater than 120,000, greater than 130,000, greater than 140,000, greater than 150,000, greater than 160,000, greater than 170,000, greater than 180,000, greater than 190,000, or greater than 200,000 viral nucleic acid sequences. In an exemplary embodiment, a panel of the disclosure comprises probes capable of specifically hybridizing to 185,835 viral nucleic acid sequences. For a listing of all the sequences utilized in the ViroCap panel of the disclosure, see Wylie et al., Enhanced virome sequencing using targeted sequence capture. Genome Res 2015; 24(12): 1910-20, the disclosure of which is hereby incorporated by reference in its entirety, including all supplemental information and zip files associated with the publication.

Additionally, a panel of the disclosure comprises probes capable of specifically hybridizing to greater than 50 Mb of viral nucleic acid sequences. For example, a panel of the disclosure comprises probes capable of specifically hybridizing to greater than 50 Mb, greater than 60 Mb, greater than 70 Mb, greater than 80 Mb, greater than 90 Mb, greater than 100 Mb, greater than 110 Mb, greater than 120 Mb, greater than 130 Mb, greater than 140 Mb, greater than 150 Mb, greater than 160 Mb, greater than 170 Mb, greater than 180 Mb, greater than 190 Mb, or greater than 200 Mb of viral nucleic acid sequences. In an exemplary embodiment, a panel of the disclosure comprises probes capable of specifically hybridizing to 198.9 Mb of viral nucleic acid sequences.

Further, a panel of the disclosure comprises probes capable of specifically hybridizing to viral nucleic acid sequences from all DNA and RNA viruses with sequenced genomes from vertebrate hosts, excluding human endogenous retroviruses and bacteriophages. In certain embodiments, a panel of the disclosure comprises probes capable of specifically hybridizing to viral nucleic acid sequences from NCBI's RefSeq collection, complementary representation of unique regions from NCBI Genome Neighbor targets, selected representation of NCBI Influenza Virus Resource sequences, and the entirety of the probe space represented on the Virochip microarray (Yu et al. 2012), GEO accession number GPL15905. The viral nucleic acid sequences may be consolidated via methods described in the Examples. In certain embodiments, a panel of the disclosure comprises probes capable of specifically hybridizing to about 27 Mb of viral nucleic acid sequences from RefSeq, about 153 Mb of viral nucleic acid sequences from Genome Neighbor targets, about 16 Mb from Influenza Virus Resource sequences, and about 3 Mb of viral nucleic acid sequences from Virochip microarray. Importantly, the panel of probes described herein may be continually updated via the methods described herein as new sequences become available.

More specifically, a panel of the disclosure comprises probes capable of specifically hybridizing to viral nucleic acid sequences from 34 viral families comprising 190 annotated viral genera and 337 species. Non-limiting examples of viral families with which the probes are capable of specifically hybridizing to include Adenoviridae, Alloherpesviridae, Asfarviridae, Herpesviridae, Iridoviridae, Malacoherpesviridae, Papillomaviridae, Polyomaviridae, Poxviridae, Birnaviridae, Picobirnaviridae, Reoviridae, Retroviridae, Hepadnaviridae, Parvoviridae, Anelloviridae, Circoviridae, Coronaviridae, Bunyaviridae, Flaviviridae, Orthomyxoviridae, Caliciviridae, Togaviridae, Arenaviridae, Arteriviridae, Astroviridae, Bornaviridae, Filoviridae, Hepeviridae, Paramyxoviridae, Picornaviridae, and Rhabdoviridae. In an exemplary embodiment, a panel of the disclosure comprises probes capable of specifically hybridizing to viral nucleic acid sequences from the viruses depicted in FIG. 4A. In an exemplary embodiment, a panel of the disclosure comprises probes capable of specifically hybridizing to viral nucleic acid sequences from the viruses listed in Table 10.

Hybridization of the probes to the nucleic acid may be done via methods standard in the art. For example, the nucleic acid may first be denatured such that it is single stranded and then the panel of probes and nucleic acid may be incubated at elevated temperature for about 1 to about 72 hours. More specifically, the nucleic acid may be denatured at >95° C. for about 20 minutes and then the panel of probes and nucleic acid may be incubated at about 47° C. for about 64 hours to about 72 hours.

Prior to, during or after hybridization an index sequence and adapter may be attached to the nucleic acid fragments. As used herein, an “adapter” is a sequence that permits universal amplification. A key feature of the adapter is to enable the unique amplification of the hybridized nucleic acid only without the need to remove existing template nucleic acid or purify the hybridized nucleic acid. This feature enables an “add only” reaction with fewer steps and ease of automation. The adapter is attached to the 5′ and 3′ end of the hybridized nucleic acid. The adapter may be Y-shaped, U-shaped, hairpin-shaped, or a combination thereof. In a specific embodiment, the adaptor is Y-shaped. In another specific embodiment, the adapter may be an Illumina adapter for Illumina sequencing. An index sequence may also be attached to each nucleic acid fragment. The addition of an index sequence allows pooling of multiple samples into a single sequencing run. This greatly increases experimental scalability, while maintaining extremely low error rates and conserving read length. The index sequence may be about 5 to about 10 nucleotides. Accordingly, the index sequence may be 5, 6, 7, 8, 9 or 10 or more nucleotides. In an embodiment, the index sequence is about 6 nucleotides.

A method of the disclosure further comprises, in part, isolating the probes that specifically hybridize to viral nucleic acid sequences within the sample. Methods of isolating probes are known in the art. In a specific embodiment, bead purification may be used to isolate the probes that specifically hybridize to viral nucleic acid sequences within the sample. For example, Streptavidin beads may be used. The Streptavidin beads may be incubated with the hybridized sample at about 47° C. for about 45 minutes. The sample may then be washed to remove unbound beads.

The isolated viral nucleic acid sequences may then be amplified. In general, amplification is carried out using polymerase chain reaction (PCR). A PCR reaction may comprise isolated viral nucleic acid, primers, polymerase, water, buffer, and deoxynucleotide triphosphates (dNTPs). PCR may be performed according to standard methods in the art. By way of non-limiting example, the PCR reaction may comprise denaturation, followed by about 10-20 cycles of denaturation, annealing and extension, followed by a final extension. In an exemplary embodiment, the PCR reaction comprises denaturation at about 98° C. for about 30 seconds, followed by about 10 to about 20 cycles of (about 98° C. for about 10 seconds, about 60-72° C. for about 30 seconds, about 72° C. for about 30 seconds), followed by a final extension at about 72° C. for about 5 minutes. Optionally, the amplified viral nucleic acid is then purified, for example, via column purification.

A method of the disclosure further comprises, in part, sequencing the isolated viral nucleic acid sequences. Sequencing may be performed according to standard methods in the art. Sequencing is preferably performed on a massively parallel sequencing platform, many of which are commercially available including, but not limited to Illumina, Roche/454, Ion Torrent, Oxford Nanopore Technologies and PacBio. In an exemplary embodiment, Illumina sequencing is used.

After sequencing of the viral nucleic acid, the sequences are compared with a database comprising reference viral nucleic acid sequences to determine the identity of the viral nucleic acid in the sample. Comparison of sequences generally involves aligning the experimentally determined sequence with a reference sequence. Methods of aligning sequences are known in the art. In a specific embodiment, the alignment algorithm utilized may be BWA-MEM. BWA-MEM is an alignment algorithm for aligning sequence reads or long query sequences against a large reference genome. It automatically chooses between local and end-to-end alignments, supports paired-end reads and performs chimeric alignment. The algorithm is robust to sequencing errors and applicable to a wide range of sequence lengths from 70 bp to a few megabases. For mapping 100 bp sequences, BWA-MEM shows better performance than several state-of-art read aligners to date. The sequence alignments may then be evaluated to determine the identity of the viral nucleic acid in the sample. Methods of evaluating sequence alignments are known in the art. In a specific embodiment, SAMtools is utilized to evaluate the sequence alignments. SAMtools is a set of utilities for interacting with and post-processing short DNA sequence read alignments in the SAM (=Sequence Alignment/Map), BAM (=Binary Alignment/Map) and CRAM formats. Both simple and advanced tools are provided, supporting complex tasks like variant calling and alignment viewing as well as sorting, indexing, data extraction and format conversion.

A method of detecting one or more viruses as described herein increases the number of viruses detected relative to MSS alone. For example, the method of detecting viruses described herein increases the number of viruses detected by greater than 40% relative to MSS alone. Accordingly, the method of detecting viruses described herein increases the number of viruses detected by greater than 40%, greater than 45%, greater than 50%, greater than 55%, greater than 60%, greater than 65%, greater than 70%, greater than 75%, greater than 80%, greater than 85%, greater than 90%, or greater than 95% relative to MSS alone. In a specific embodiment, the method of detecting viruses described herein increases the number of viruses detected by greater than 50% relative to MSS alone.

A method of detecting one or more viruses as described herein increases the breadth of coverage of viral genomes relative to MSS alone. For example, the method of detecting viruses described herein results in a breadth of coverage of greater than 40%. Accordingly, the method of detecting viruses described herein results in a breadth of coverage of greater than 40%, greater than 45%, greater than 50%, greater than 55%, greater than 60%, greater than 65%, greater than 70%, greater than 75%, greater than 80%, greater than 85%, greater than 90%, or greater than 95%. In a specific embodiment, the method of detecting viruses described herein results in a breadth of coverage of greater than 80%. In another specific embodiment, the method of detecting viruses described herein results in a breadth of coverage of greater than 90%.

In certain embodiments, if the sample is a biological sample obtained from a subject, the subject is treated based on the virus detected. Accordingly, a method of the disclosure may be used to diagnose, treat or prevent a disease in a subject. Identification of a virus in a subject could facilitate the diagnosis of a disease, enable the proper methodology, such as a therapeutic, to treat the disease, or prevent the onset of disease by administration of prophylactic therapies. Additionally, identification of anti-viral drug resistant strain could facilitate better treatment strategies.

Importantly, using the methods described herein, a panel of probes could comprise probes that specifically hybridize to bacteria and associated plasmids, fungi, protists, and other microbes. For bacteria, the probes may specifically hybridize to virulence genes such as toxin genes or antibiotic resistance genes. Using the methods described herein, specifically those detailed in the Examples, one of ordinary skill in the art would be able to design a panel of probes to detect a variety of human pathogens. Accordingly, the panel of probes of the disclosure may comprise a comprehensive set of probes to detect a variety of human pathogens. As such, a method of the disclosure may further comprise a method of detecting a pathogen in a sample. As described above, the sample may be environmental or a biological sample obtained from a subject. Additionally, a method of the disclosure may further comprise a method of detecting an infection in a subject. The term “infection” as used herein includes the presence of pathogens in or on a subject, which, if its growth were inhibited, would result in a benefit to the subject. As such, the term “infection” in addition to referring to the presence of pathogens also refers to normal flora which are not desirable. The term “pathogen” as used herein refers to an infectious agent that can produce disease. Non-limiting examples of an infectious agent include virus, bacterium, prion, fungus, viroid, or parasite that cause disease in a subject.

II. Kit

In another aspect, the disclosure provides a kit comprising a panel of the disclosure as described in Section I. More specifically, a kit comprises a panel of probes that specifically hybridize to viral nucleic acid sequences as described in Section I. The kit may also comprise detection agents that can detect hybridization of the probes to the viral nucleic acid sequences of the disclosure, and instructions for use. A person skilled in the art will appreciate that a number of detection agents can be used to detect hybridization of the probes to viral nucleic acid sequences. For example, the detection agent can be a label. The label is preferably capable of producing, either directly or indirectly, a detectable signal. For example, the label may be radio-opaque or a radioisotope, such as ³H, ¹⁴C; ³²P, ³⁵S; ¹²³I; ¹²⁵I; ¹³¹I; a fluorescent (fluorophore) or chemiluminescent (chromophore) compound, such as fluorescein isothiocyanate, rhodamine or luciferin; an enzyme, such as alkaline phosphatase, beta-galactosidase or horseradish peroxidase; an imaging agent; or a metal ion.

The kit can also include a control or reference standard and/or instructions for use thereof. In addition, the kit can include ancillary agents such as vessels for storing or transporting the detection agents and/or buffers or stabilizers.

In certain embodiments, the kit is a nucleic acid array. Such an array may be used to detect viral nucleic acid sequences in a biological sample. An array may be comprised of a substrate having disposed thereon probes of the disclosure capable of hybridizing to the viral nucleic acid sequences of the disclosure.

Several substrates suitable for the construction of arrays are known in the art. The substrate may be a material that may be modified to contain discrete individual sites appropriate for the attachment or association of the nucleic acid and is amenable to at least one detection method. Alternatively, the substrate may be a material that may be modified for the bulk attachment or association of the nucleic acid and is amenable to at least one detection method. Non-limiting examples of substrate materials include glass, modified or functionalized glass, plastics (including acrylics, polystyrene and copolymers of styrene and other materials, polypropylene, polyethylene, polybutylene, polyurethanes, TeflonJ, etc.), nylon or nitrocellulose, polysaccharides, nylon, resins, silica or silica-based materials including silicon and modified silicon, carbon, metals, inorganic glasses and plastics. In an embodiment, the substrates may allow optical detection without appreciably fluorescing.

A substrate may be planar, a substrate may be a well, i.e. a 1534-, 384-, or 96-well plate, or alternatively, a substrate may be a bead. Additionally, the substrate may be the inner surface of a tube for flow-through sample analysis to minimize sample volume. Similarly, the substrate may be flexible, such as a flexible foam, including closed cell foams made of particular plastics. Other suitable substrates are known in the art.

The nucleic acid or biomolecules may be attached to the substrate in a wide variety of ways, as will be appreciated by those in the art. The nucleic acid may either be synthesized first, with subsequent attachment to the substrate, or may be directly synthesized on the substrate. The substrate and the nucleic acid may both be derivatized with chemical functional groups for subsequent attachment of the two. For example, the substrate may be derivatized with a chemical functional group including, but not limited to, amino groups, carboxyl groups, oxo groups or thiol groups. Using these functional groups, the nucleic acid may be attached using functional groups on the biomolecule either directly or indirectly using linkers.

The nucleic acid may also be attached to the substrate non-covalently. For example, a biotinylated nucleic acid can be prepared, which may bind to surfaces covalently coated with streptavidin, resulting in attachment. Alternatively, a nucleic acid or nucleic acids may be synthesized on the surface using techniques such as photopolymerization and photolithography. Additional methods of attaching biomolecules to arrays and methods of synthesizing biomolecules on substrates are well known in the art, i.e. VLSIPS technology from Affymetrix (e.g., see U.S. Pat. No. 6,566,495, and Rockett and Dix, Xenobiotica 30(2):155-177, each of which is hereby incorporated by reference in its entirety).

In one embodiment, the nucleic acid or nucleic acids attached to the substrate are located at a spatially defined address of the array. Arrays may comprise from about 1 to about several hundred thousand addresses. A nucleic acid may be represented more than once on a given array. In other words, more than one address of an array may be comprised of the same nucleic acid. In some embodiments, two, three, or more than three addresses of the array may be comprised of the same nucleic acid. In certain embodiments, the array may comprise control nucleic acids and/or control addresses. The controls may be internal controls, positive controls, negative controls, or background controls.

Furthermore, the nucleic acids used for the array may be labeled. One skilled in the art understands that the type of label selected depends in part on how the array is being used. Suitable labels may include fluorescent labels, chromagraphic labels, chemi-luminescent labels, FRET labels, etc. Such labels are well known in the art.

EXAMPLES

The following examples are included to demonstrate preferred embodiments of the invention. It should be appreciated by those of skill in the art that the techniques disclosed in the examples that follow represent techniques discovered by the inventors to function well in the practice of the invention, and thus can be considered to constitute preferred modes for its practice. However, those of skill in the art should, in light of the present disclosure, appreciate that many changes can be made in the specific embodiments which are disclosed and still obtain a like or similar result without departing from the spirit and scope of the invention.

Introduction to the Examples

A limitation of MSS as employed to date for virus detection is that the amount and proportion of viral nucleic acid in samples from humans may be very low, and in these cases, few viral sequences are generated. In our experience using MSS, we have detected fewer than 10 viral sequences per 25 million sequence reads generated for a virus that was detected in a sample by a molecular assay. In other instances, we have failed to detect viruses known to be present based on molecular assays. These difficulties may reflect the small genome size of some viruses and/or low levels of virus in the sample. This can be a particular problem for studies of the virome of healthy, asymptomatic individuals, in whom virus levels may be low. In efforts to increase the sequence yield, purification or enrichment procedures have been employed, including low-speed centrifugation and/or filtration to remove bacterial and host cells, sample treatment with nucleases to digest nucleic acid not protected within virions, or concentration of viral particles by high-speed gradient centrifugation (for review, see Duhaime and Sullivan 2012). Each of these procedures may bias against detection of some viruses (Breitbart and Rohwer 2005; Young et al. 2014).

An alternative method for enrichment of viral sequences in a metagenomic sample prior to sequencing is targeted sequence capture. Our aim was to develop a comprehensive viral targeted sequence capture panel that could be used to (1) assess all viruses known to infect vertebrate cells and (2) detect divergent viruses. To this end, we created ViroCap, a targeted sequence capture panel that enhances the detection of a comprehensive set of viruses with vertebrate hosts. Here we describe the first application of ViroCap to enrich a broad range of viruses from human clinical samples.

Example 1
Analysis of Clinical and Research Samples with ViroCap

ViroCap includes targets from 34 viral families, comprising 190 annotated viral genera and 337 species (FIG. 1). Included viruses represent all DNA and RNA viruses with sequenced genomes from vertebrate hosts, except human endogenous retroviruses, which were excluded due to their prevalence within the human genome. Nearly 1 billion bp of viral genome sequences were condensed into <200 million bp of targets (Table 3) using k-mer and clustering analyses to define a unique set of reference sequences, as described in the Methods.

We evaluated the effectiveness of detecting DNA and RNA viruses in MSS data compared with ViroCap targeted sequence capture data in two sets of human samples. In experiment 1, the sample set consisted of clinical samples that had been found to be positive by molecular tests in the Diagnostic Virology Laboratory at St. Louis Children's Hospital. Nucleic acid extracts available in the Virology Laboratory were pooled, and a sequencing library was prepared from this pooled nucleic acid (see Methods). In experiment 2, eight patient samples from a research study of young children with fever (Colvin et al. 2012; Wylie et al. 2012) were selected for use in the present study because each had been found to be positive for one or more viruses when tested by batteries of PCR assays used in that study. Individual sequencing libraries were prepared from each of the eight samples as described in the Methods and pooled for sequencing. Experiments 1 and 2 were analyzed in separate sequencing runs. In each experiment, sequencing libraries were divided, and the same library was sequenced without targeted sequence capture (precapture) and following targeted sequence capture using ViroCap (post-capture).

In experiment 1, we detected 10 viruses in the precapture MSS data (Table 1). After targeted sequence capture using the same sequencing library, we detected the same 10 viruses plus four additional viruses. Targeted sequence capture resulted in dramatic improvements in all sequence coverage metrics (Table 1; Table 4), including number and percentage of viral reads, breadth and depth of coverage, and coverage gaps. In experiment 1, the median increase in percentage of viral reads was 674 (range, >13-9335), and the median breadth of coverage increased from 2.1% (range, 0%-89.8%) to 83.2% (range, 0.8%-100%). Illustrative examples are shown in FIG. 2A, FIG. 2B, FIG. 2C, FIG. 2D.

In experiment 2, 11 viruses were detected in the precapture MSS data (Table 2). After targeted sequence capture with ViroCap using the same sequencing libraries, we detected those 11 viruses plus seven additional viruses. Thus, in the two experiments together, the number of viruses detected went from 21 to 32, a 52% increase. All of the viruses detected in both experiments were confirmed by PCR assays except for a torque teno virus in the clinical pool, which was not evaluated by PCR (Table 1, Table 8, Table 9). Viruses detected encompassed 19 genera from 10 families (FIG. 4A, FIG. 4B). In experiment 2, we again found that targeted sequence capture resulted in dramatic improvements in sequencing parameters. In experiment 2, the median fold increase in percentage of viral reads was 296 (range, >56-2722), and the median breadth of coverage increased from 2.0% (range, 0%-99.9%) to 75.6% (range, 13.5%-100%). Illustrative examples are shown in FIG. 2E, FIG. 2F, FIG. 2G, FIG. 2H.

By use of targeted sequence capture, >80% breadth of coverage of the viral genomes was obtained for 16 of 32 viruses, including diverse DNA and RNA genomes of sizes ranging from 5-161 kb (Table 1, Table 2, Table 4, Table 5). Greater than 90% breadth of coverage was obtained for 12 of 32 viruses, and eight viruses had 100% coverage. Precapture, the median gap size in genome coverage was 1704 bp (range 4-152,261 bp), and post-capture, the median gap size was 82 bp (range 0-13,734 bp) (Table 4, Table 5). High genome representation was obtained for multiple viruses in the same capture reaction, as experiments 1 and 2 were each single, independent capture reactions encompassing multiple samples (see Methods).

Example 2
Targeted Sequence Capture Identifies Divergent Viral Sequences

To determine whether or not divergent sequences could be identified using targeted sequence capture, we tested ViroCap on samples containing anelloviruses, a highly divergent group of ssDNA viruses that have a common genome structure but may have up to 30%-50% nucleotide sequence diversity among separate species (Ninomiya et al. 2007; de Villiers et al. 2011). We selected anellovirus-positive samples that we had previously characterized using multistrand displacement amplification followed by high-throughput sequencing. After assembling the precapture sequences to generate contiguous sequences (contigs), we identified anellovirus contigs>1 kb in length. The contigs had varying degrees of similarity to the reference genomes used in the ViroCap panel based on BLAST alignments, ranging from 58%-98% nucleotide sequence identity for the top high-scoring segment pair (HSP) alignment (FIG. 3A; Table 6). All of the contigs assembled using the precapture sequence data were also detected post-capture. The contig with 58% identity to the reference database was missing 13% of its length post-capture (FIG. 3A). The contig with the next lowest percentage identity to the reference database (62%) was fully sequenced (i.e., 100% breadth-of-coverage) (FIG. 3A, FIG. 3B). FIG. 3B illustrates the nucleotide sequence matches/mismatches between the contig and the most similar reference genome in the sequences used for the ViroCap design. These results demonstrate that targeted sequence capture using the ViroCap panel allows us to identify variant virus sequences having as low as 58% nucleotide sequence identity.

Example 3
Specificity of Targeted Sequence Capture

In order to determine whether ViroCap systematically enriched off-target sequences, we compared the filtering and classification statistics of the nonviral sequences in the precapture MSS and targeted sequence capture data (Table 7, FIG. 5, FIG. 6). If our probes were specific, we would not observe any systematic enrichment of specific human chromosomes or bacterial genomes post-capture. However, we anticipated a small amount of variation because the targeted sequence capture library had been through more sample handling in the form of incubations, dilutions, and amplifications. We found that the proportions of the nonviral sequences were strongly correlated (Pearson's correlation value: r=0.9881-0.9996) (Table 7, FIG. 5). A slightly higher percentage (mean, 5.8%; median, 5%; range, 0%-10.7%) of reads aligned to nonviral reference genomes in the post-capture data compared with precapture in all but one of the samples. However, the distribution of sequences among reference genomes did not show a systematic bias. This can be seen in the conserved distribution of sequences among human chromosomes (FIG. 6).

Discussion for the Examples

We designed the ViroCap panel to enhance the sensitivity of MSS for comprehensive detection of known vertebrate viruses, as well as to detect divergent viruses that have nucleotide sequence similarities to known viruses. Here we have demonstrated that targeted sequence capture using ViroCap dramatically increases the amount of viral sequence obtained from human samples compared with conventional MSS, greatly enhancing the resolution of genomic characterization and increasing the number of viruses detected by >50%. Enhancement was demonstrated for DNA and RNA viruses from multiple diverse families. The increased sensitivity will be valuable in multiple research applications, including descriptions of the human virome, and will also improve the potential for MSS as a diagnostic tool in human and animal health.

The dramatic enrichment of viral nucleic acids present within the targeted sequence capture libraries offers important advantages. First, as we demonstrate, MSS with ViroCap can be used to generate complete or nearly complete genome sequences directly from clinical samples, including those with very low proportions of viral nucleic acid, without culturing the viruses. Availability of extensive sequence data provides the opportunity to distinguish among closely related virus subtypes or even among viral strains, which might not be distinguished by other types of assays. In the data set presented here, we demonstrated the ability to type rhinoviruses and distinguish between human herpesvirus 6B and 6A, adenovirus types A and C, and polyomaviruses JC and BK. Notably, influenza A virus was identified precapture but could only be typed as an H3N2 virus post-capture. We used ViroCap to sequence the enterovirus D68 genome directly from clinical samples, and in that work, the extensive sequence data that we obtained allowed us carry out detailed comparative analysis of closely related strains that differed at a limited number of nucleotide positions. Second, the use of ViroCap can reduce the depth of sequencing needed to detect viruses in samples. Because targeted sequence capture results in a large increase in the percentage of sequencing reads that are viral (Table 1, Table 2, Table 4, Table 5, Table 6, FIG. 2), ViroCap achieves better viral coverage while requiring the generation of fewer total sequence reads. This increased efficiency has the potential to lower sequencing costs.

An important feature of ViroCap is the tiling of capture probes across genomes, including highly conserved regions that may allow detection of genomic fragments of divergent viruses that share little overall sequence homology with known viruses. We illustrated such capability using anelloviruses containing divergent nucleotide sequence (FIG. 3). In addition, the inclusion of Genome Neighbor targets enhanced our design not only by expanding beyond the tiled Reference Sequence (RefSeq) viruses but also by adding sensitivity for genomic regions where RefSeq capture probes alone might not have captured divergent strains (see Methods). ViroCap cannot detect viruses that do not share any nucleotide sequence similarity to known viruses; however, we note that because the enrichment of viral nucleic acids occurs after sequence library construction, the uncaptured portion of the library could subsequently be sequenced for additional attempts at pathogen discovery. Furthermore, the ViroCap panel is extensible and will be updated periodically with new viral sequences as they are added to RefSeq and the Genome Neighbors databases. Updates will be publicly available through our GitHub repository (see Data Access).

There were a few genomes (fewer than 10) in the NCBI reference databases that had been cloned into bacterial vectors prior to sequencing, and the deposited viral genome sequences contained bacterial vector sequence. We were not aware of this prior to probe design, so ViroCap includes capture probes that target these sequences. This resulted in enrichment of some sequences (on average 1.1% of total nonviral reads) that were subsequently recognized by our analysis pipeline as bacterial based on nucleotide sequence alignment. In subsequent versions of ViroCap, we will filter out these bacterial vector sequences.

In the experiments reported here, we pooled sequencing libraries prior to targeted sequence capture in order to reduce cost, but we still achieved enhanced detection of multiple viruses of varying abundance. As has been reported for strategies that involve sequencing indexed, pooled libraries (Kircher et al. 2012), we observed some sample cross-contamination. This cross-contamination is recognizable when a high number of viral sequences are detected in the truly positive sample, while few sequences (<0.05% of the viral sequences in the truly positive sample) of the same virus are detected in other samples in the pool. In a clinical setting, each sample would optimally be captured and sequenced independently to reduce the possibility of sample cross-contamination. However, future methodological improvements could allow pooling of clinical specimens.

The success of viral targeted sequence capture is affected by the representation of the virus in the sequencing library. In our sample preparation, total nucleic acid extracted from the sample was reverse transcribed and randomly amplified prior to library construction (Wang et al. 2003), allowing detection of DNA and RNA viral genomes within the same sequencing experiment. The uneven sequence representation observed for some genomes (FIG. 2) is likely due in part to detection of messenger RNA, whose abundance reflects patterns of gene expression, as well as to primer biases during the reverse transcription and amplification steps. Capture hybridization may also induce bias, in that sequences that diverge from target probe sequences may be captured less efficiently than those with exact or nearly exact matches to the probe. Taken together, these data suggest that further improvement in the performance of viral targeted sequence capture may be achievable by improving efficiency of reverse transcription, amplification, and library construction, while continuing to update the ViroCap panel as new, divergent genome sequences become available.

Methods other than genome sequencing have been used for virus characterization and discovery, including Virochip, a microarray-based method for detection/genotyping of viral pathogens (Wang et al. 2002; Chen et al. 2011), and PathoChip, a microarray designed to detect viruses and other microbial pathogens (Baldwin et al. 2014). While designed to detect known viruses by means of microarray probe spotting, this technology has also shown the ability to detect emerging viruses (Wang et al. 2003; Yu et al. 2012). The primary difference between the designs of these microarrays and ViroCap targeted sequence capture is that the latter approach targets complete viral genomes while the microarrays target smaller, discrete genomic regions. The results obtained from each approach also differ significantly. The microarray approach detects the presence of a virus but does not directly provide sequence information. In contrast, MSS enhanced by ViroCap targeted sequence capture provides sequence data, sometimes covering the entire genome.

In conclusion, ViroCap greatly enhances the sensitivity of MSS for nucleotide sequence-based virus detection. To our knowledge, ViroCap represents the first effort to apply a targeted sequence capture approach to the detection of a comprehensive set of viruses. Its research applications are far reaching, allowing a new, higher-resolution view of eukaryotic DNA and RNA viruses in the microbiome. ViroCap should also help realize the potential of MSS as a clinical diagnostic tool that can simultaneously detect viruses and provide immediate characterization, including taxonomic assignment, strain typing, virulence characteristics, and anti-viral drug resistance genotyping. ViroCap could also be modified into a tool for broader pathogen identification, which might include a comprehensive set of human pathogens: genes from viruses, bacteria (e.g., toxin genes, antibiotic resistance genes), fungi, protists, and other microbes.

Methods for the Examples

Taxonomy selection: At the time, we designed the ViroCap panel, NCBI GenBank had available for download a total of ˜1 Gb of sequence representing 440 viral families, well beyond the 200 Mb of target space supported by the custom SeqCap EZ library format (NimbleGen). Therefore, we developed the following approach for selecting representative targeted sequence capture probes. Because we were interested in studying viral diseases of humans, we excluded bacteriophages and endogenous human retroviruses. We also specifically did not include references from the following NCBI viral reference genome database host categories: algae, archaea, bacteria, diatom, environment, fungi, invertebrates, plants, and protozoa. After filtering, our target list contained reference sequences from the following host categories: human, vertebrates, and “unknown.” This list included viruses that could have both vertebrate and invertebrate hosts, such as vertebrate viruses with insect vectors. Based on these broad viral-host categories, we downloaded all of the associated viral reference sequences in each chosen category from NCBI (accessed Feb. 3, 2014). These sequences comprise the core reference database from which our capture library is designed. Our capture library includes targets from 34 viral families composed of 190 annotated viral genera and 337 species (FIG. 1; Supplemental Tables S6, S7 of Wylie et al., Enhanced virome sequencing using targeted sequence capture. Genome Res 2015; 24(12): 1910-20, the disclosure of which is hereby incorporated by reference in its entirety, including all supplemental information and zip files associated with the publication). Sources of viral sequences include complete representation of the viral genomes from NCBI's RefSeq collection, complementary representation of unique regions from Genome Neighbor targets, selected representation of NCBI Influenza Virus Resource sequences, and the entirety of the probe space represented on the Virochip microarray (Yu et al. 2012), GEO accession number GPL15905. The methods used to consolidate these database sequences follow.

RefSeq: NCBI's RefSeq (www.ncbi.nlm.nih.gov/refseq/) genome collection is a database of taxonomically diverse entries representing comprehensive, well-annotated genome sequences (Pruitt et al. 2014; Tatusova et al. 2014). As RefSeq entries are the most complete sequence representatives in terms of annotation and metadata consistency, we targeted selected viral RefSeqs by tiling of targeted sequence capture probes across the entire length of each RefSeq's genome, with the intention of capturing the entire viral genome. For our capture library, RefSeq nucleotide FASTA sequences were downloaded for desired viral-host categories (human; vertebrates; vertebrates, human; vertebrates, invertebrates; vertebrates, invertebrates, human; invertebrates, vertebrates; unknown) using both the online NCBI taxonomy viewer (www.ncbi.nlm.nih.gov/genomes/GenomesGroup.cgi?opt=virus&taxid=10239), as well as the RefSeq-specific FTP site (ftp.ncbi.nlm.nih.gov/refseq/release/viral). Entries were merged to avoid redundancy. RefSeq targets were pooled with the other sequence candidates (see Design Consolidation). A total of 1456 RefSeq FASTA entries (26.9 Mb) representing 190 viral genera were completely tiled for inclusion in the ViroCap library, accounting for 13.5% of the total capture library's target space.

Genome Neighbors: While RefSeq entries are single, canonical species representations, other complete or partial viral sequences also exist in DDBJ/EMBL/GenBank. In the case of viral sequences, there is extensive redundancy in these databases due to the large number of similar viral strains, isolates, and mutants. Therefore, non-RefSeq (e.g., DDBJ, EMBL, GenBank) nucleotide sequences of complete viral genomes that belong to the same species as a RefSeq sequence are classified as Genome Neighbors for that reference sequence, provided that they match all of the criteria that were used to select complete genomic sequences (Bao et al. 2004). At the time of our ViroCap panel design, Genome Neighbors (sequences downloaded from Entrez Genome link “Other genomes for species”; accessed Feb. 3, 2014) in total represented an additional 56,314 entries and 507.1 Mb of sequence, more than 2.5 times our SeqCap EZ capture target sequence space limit. Therefore, an alternative target selection approach was employed to add diversity to our RefSeq selections by selecting unique, complementary Genome Neighbor sequences.

RefSeq and Genome Neighbor sequence association: We began the process of variant sequence selection by identifying conserved regions in Genome Neighbors already represented by completely tiled RefSeq capture probes. First, we associated our viral RefSeq selections with corresponding Genome Neighbors. This was performed by downloading Genome Neighbor annotation files from NCBI (www.ncbi.nlm.nih.gov/genomes/GenomesGroup.cgi?opt=virus&taxid=10239) and associating the information with our RefSeq annotation files, by means of ad hoc Perl parsing and coupling scripts (for results, see Supplemental Tables S6, S7 of Wylie et al., Enhanced virome sequencing using targeted sequence capture. Genome Res 2015; 24(12): 1910-20, the disclosure of which is hereby incorporated by reference in its entirety, including all supplemental information and zip files associated with the publication). Once associated, the parent RefSeq sequences could be compared with related Genome Neighbor sequences to determine conserved and divergent nucleotide regions. Each viral RefSeq entry was individually reviewed, along with associated Genome Neighbor entries. FASTA sequences were collected for each RefSeq entry and its related Genome Neighbors for subsequent k-mer analysis.

K-mer analysis: Each of the Genome Neighbor sequences was split into 100-bp k-mers by means of an exhaustive 1-bp sliding window algorithm, as depicted in FIG. 7. The resultant output thus included all possible 100-bp sequences based on the combined Genome Neighbor sequence space. As our SeqCap EZ targeted sequence capture probe lengths are 100 bp, the sequences generated by the sliding window algorithm represent the total number of possible probe combinations based on the aggregate of Genome Neighbor sequences. Based on our conservative expectation of hybridization/homology at the capture probe level, we then clustered all of the Genome Neighbor 100-mers back to the parent RefSeq sequence at ≥90% sequence identity using length-sorted FASTA entries and the UCLUST (Edgar 2010) package (version 1.1.579; parameters: -rev-id 0.90). Given that all of our candidate sequences were 100 bp in length and all RefSeq entries are >100 bp, UCLUST always used the longer RefSeq as the first seed (centroid) in which to attempt folding of other sequences. As the parent RefSeq had complete probe tiling in our design, any Genome Neighbor 100-mer with ≥90% identity was considered already represented in our capture library and therefore discarded. Genome Neighbor 100-mers with <90% identity were chosen for inclusion in the capture library. As the sliding window approach produces 100-mers that overlapped one another, we merged overlapping 100-mers based on their Genome Neighbor genomic coordinates into single contiguous spans using BEDTools (Quinlan and Hall 2010) functions.

Genome Neighbor sub-sequences: Resultant subsequences were excised as FASTA entries from corresponding Genome Neighbor references using WU-BLAST's (blast.wustl.edu) xdget application and added to the ViroCap panel. These supplementary entries are easily identifiable in our final target design, as the FASTA headers for the entries list the original parent sequence ID with the excised span indicated in curly braces (e.g., gi|1249624|emb|A28090.1|HPV42 [partial] genomic sequence {SQ 2444-2644}). In this manner, for each RefSeq species, we generated Genome Neighbor subsequences from 100 bp to 21 kb in length to add to our capture panel.

These processing steps reduced the aggregate input Genome Neighbors targeted sequence space from 507.1 Mb to 153.2 Mb (Table 3), and these sequences were pooled with our other targeted capture sequence targets (see Design Consolidation). A total of 130,808 partial Genome Neighbor FASTA entries (153.2 Mb) were added for capture in our ViroCap library, accounting for 77.1% of the total capture library's target space.

Influenza Virus Resource: We obtained reference sequences from NCBI's Influenza Virus Resource database (www.ncbi.nlm.nih.gov/genomes/FLU/FLU.html), which contains sequence data from the NIAID Influenza Genome Sequencing Project, as well as from GenBank. At the time of our capture panel design, the NCBI Influenza Virus Resource contained 305,524 influenza entries, representing 458.1 Mb of sequence. This is 17 times the size of our viral RefSeq selections and three times the size of our collapsed Genome Neighbor targets. Our selected RefSeq sequences included 29 influenza RefSeq entries (each influenza virus segment is represented as a separate entry), targeted in its entirety. These sequences served as the core of influenza reference genomes against which all other influenza sequences were compared. We directly clustered the long influenza sequences using length-sorted FASTA and the UCLUST package (version 1.1.579; parameters: -rev-id 0.90). In UCLUST, a cluster is defined by one sequence, known as the centroid or representative sequence. To lessen the computational burden and ensure that our core influenza RefSeq genomes were always the longest first seeds (centroids) in UCLUST's clustering process, we artificially concatenated the 29 parent RefSeq sequences into one linear sequence representation and then split this representation into six segments ranging in size from 18-26 kb. UCLUST preferentially seeded with the long RefSeq construct segments when clustering, ensuring that clustering was first attempted within the longer, canonical references. ULCUST was run with a requirement of ≥90% sequence identity to fold into a parent influenza RefSeq entries segment. Therefore, only sequences that (1) had <90% identity to influenza RefSeq entries and (2) were subsequent centroids in non-RefSeq clusters were chosen for inclusion in our capture panel. This process reduced the aggregate input Influenza Resource Database reference sequence from 458.1 Mb to 15.7 Mb (Table 3). Finally, supplementary influenza targets were pooled with the other sequence candidates (see Design Consolidation). A total of 9759 influenza FASTA entries (15.7 Mb) were added for targeted sequence capture in our ViroCap library, accounting for 7.9% of the total capture library's target space.

Virochip microarray: Considering the biologically important short sequence signatures represented on the Virochip panel (Yu et al. 2012), as well as the comparatively small footprint, we subsumed these sequences within our targeted sequence capture panel design. The probe sequences for the microarray are publicly available at NCBI's Gene Expression Omnibus (GEO) repository (Edgar et al. 2002). We downloaded this information for Platform GPL15905 (Viro5AG-60k) as a text file (www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GPL15905). This platform included more than 60,000 oligonucleotides of length 60-70 bp, corresponding to 3.1 Mb of probes (Table 3). Virochip targets were pooled with the other sequence candidates (see Design Consolidation). Upon review, 1.3 Mb of the probes were already directly represented by RefSeq, Genome Neighbor, and Influenza Viral Resource sequences during capture library design and synthesis. Therefore, the remaining 25,749 (60-70 bp) Virochip FASTA entries of 1.8-Mb total size were added to ViroCap, accounting for <1% of the total targeted sequence capture panel.

Design consolidation: All of our selected candidate target sequences from RefSeq, Genome Neighbors, Influenza Virus Resource, and the Virochip microarray were combined into a single FASTA sequence file. Human endogenous retroviruses were removed from inclusion by means of a two-part process: (1) Entries were filtered by taxonomic annotation indicating human endogenous retrovirus identity, and (2) the remaining entries were BLAST-aligned to the GRCh37-lite build of the human reference genome to remove sequences with high percentage identity (≥75%) at the 100-bp probe level. Finally, sequences were hard-masked (i.e., bases converted to N's) in low complexity regions using the DUST (R Tatusov and D J Lipman, unpubl.) software module. The final ViroCap targeted sequence capture panel consists of 185,835 FASTA sequences totaling 198.9 Mb (see Taxonomy Selection).

NimbleGen sequence capture design: Our consolidated target sequences were submitted to Roche NimbleGen for capture library design and synthesis. As our final ViroCap design required 198.9 Mb, manufacturing was implemented under the custom NimbleGen SeqCap EZ Developer Library format, which has a maximum capture space of 200 Mb of nonhuman sequence. NimbleGen's Sequence Capture design offered up to 2.1 million of 50-105mer sequence probes. It was at the discretion of NimbleGen, based on proprietary algorithms, to redistribute probes for better capture uniformity, redundancy, and comprehensive target base coverage. NimbleGen provided us with a proposed capture design accompanied by coordinate (GFF, BED) files and associated sequence coverage metrics. The design set contained probe representation generated by first masking all but one exact copy of each 100-mer in our original FASTA file, tiling the unmasked regions, screening the resulting probes against the (hg19) human genome, and finally selecting only those probes that had no matches in the human genome as determined by the SSAHA (Ning et al. 2001) algorithm. NimbleGen provides two metrics for assessing in silico targeted sequence capture design coverage: (1) Target bases covered with 0-bp-offset are determined by counting target bases directly represented in probe sequences, and (2) target bases covered with 100-bp-offset are determined by counting all target bases within 100 bp of a probe. The capture design provided 95.9% 0-bp-offset coverage and 99.6% 100-bp-offset coverage of our initial 198.9-Mb target request. We approved the design for capture library synthesis and received our first 12 SeqCap EZ Library reactions for in-house Illumina sequencing and analysis.

Human subjects approval and sample selection: Samples were collected under protocols approved by the Human Research Protection Office at Washington University School of Medicine (IRB protocol nos. 201106177, 201102561, and 201102045). Samples were selected to represent a broad range of viruses that are commonly encountered in the clinical laboratory and in our research studies. Viruses were identified in samples based on clinical laboratory test results in the Diagnostic Virology Laboratory at St. Louis Children's Hospital or by PCR assays and sequencing results carried out in previous studies (Colvin et al. 2012; McElvania TeKippe et al. 2012; Wylie et al. 2012). Specimens of nasopharyngeal secretions, plasma, and stool were included.

Sequencing: Total nucleic acid was extracted from clinical samples using the EasyMag NucliSENS instrument (bioMerieux). Samples were processed in one of two ways. In experiment 1, nucleic acids from clinical specimens from the Diagnostic Virology Laboratory were combined, and the resulting pooled nucleic acid was used as input for a single sequencing library (constructed as described below). These samples are designated with a sample identification prefix of “P” in the various tables and figures. Alternatively, in experiment 2, individual sequencing libraries were made from each set of eight different specimens prior to combining the libraries for sequencing. These samples are designated with a sample identification prefix of “S” in the various tables.

For sequencing libraries, DNA and RNA viruses were assessed in the same assay as previously described (Wang et al. 2003). Specifically, the RNA in the total nucleic acid was reverse transcribed with reverse transcriptase (Promega) and random nonomers tagged with a conserved sequence (5′-GTTTCCCAGTCACGATA-3′-SEQ ID NO:1) to be used for subsequent amplification (Integrated DNA Technologies), and second strand synthesis was carried out with Sequenase V2.0 DNA polymerase (Affymetrix). DNA and RNA were subsequently amplified with Accuprime Taq (Life Technologies) using the conserved sequence on the ends of the random primers, and the DNA/cDNA mixture was sheared using the Qsonica Q800R instrument (Qsonica) to generate fragments with an average length of 500 bp. Dual-indexed sequencing libraries were constructed using the KAPA low throughput library construction kit (KAPA Biosystems).

For the anellovirus samples, DNA was amplified with the Illustra GenomiPhi V2 DNA amplification kit (GE Healthcare Life Sciences); RNA was not assessed. DNA was sheared, and libraries were constructed from each sample as described above. Sequencing libraries were pooled.

In each case, the libraries were divided, and part was directly sequenced (precapture) and part was subjected to targeted sequence capture with the custom ViroCap probes prior to sequencing (post-capture). Targeted sequence capture was carried out according to the manufacturer's specifications. We carried out 10, 10, and 16 cycles of post-capture linker-mediated PCR for experiments 1 (pooled clinical samples), 2 (individual samples from the research study), and 3 (anellovirus samples), respectively, prior to sequencing. The number of cycles was empirically determined to be the minimum number needed to obtain a 5 nM dilution of library material for qPCR and loading. Libraries were sequenced on the Illumina HiSeq 2000 or HiSeq 2500 instrument, generating 100-bp paired-end reads.

Sequence analysis: Viral sequences were identified based on nucleotide and translated protein sequence alignment against reference genomes. The pipeline is adapted from previously described methods (Wylie et al. 2014), except that nucleotide alignments were carried out using BWA-MEM with default settings (Li and Durbin 2009). Because many similar genomes are included in the reference database, we used the initial alignment statistics for each sample to choose a single reference from each species to calculate and report coverage statistics. References were chosen based on having the highest number of reference bases covered. Sequences were realigned to the selected references with BWA-MEM for calculation of coverage statistics and comparison of samples precapture and post-capture. Sequence alignments were evaluated with SAMtools (Li 2011), and sequence coverage was determined with RefCov (gmt.genome.wustl.edu/packages/refcov/) and visualized with Plot2 (plot2doc.micw.eu). For illustrative purposes, the genome coverage panels in FIG. 2 and FIG. 3 were normalized by removing (deduplicating) reads based on identical alignment start sites using the SAMtools rmdup command. For each alignment start site, only the highest-quality read was retained for forward and reverse alignment orientations. Therefore, for the 100-bp read data shown in each coverage panel, the theoretical maximum depth is 200×.

Anellovirus contigs were assembled from the precapture sequence data using IDBA-UD (Peng et al. 2012). Contigs were aligned against the sequence database used to design the ViroCap panel using BLAST (Altschul et al. 1997) with the following parameters to detect low-similarity sequences: -G 5 -E 2 -r 1 -q -1. The percentage identity of the top HSP is reported in Table 5.

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TABLE 1

Results of metagenomic shotgun sequencing for pooled specimens before and after

viral targeted sequence capture.

Genome coverage

Viral sequence reads
Breadth of
Depth

Viral read

coverage
of coverage

Virus
count^b

(%)
(mean [SD])

Sample
length
Pre-
Post-
PVR fold
Pre-
Post-
Pre-
Post-

Virus^a
ID
(bp)
capture^c
capture^d
increase^e
capture
capture
capture
capture

Human
P1
34,794
5
8103
1300
0.9
83.6
<0.1 (0.1)
19.3 (52.7)

adenovirus B,

type 35

Human
P2
5299
110
15,277
111
68.6
100.0
1.8 (2.0)
251.1 (122.1)

bocavirus 1

Influenza A
P3
13,267
4
46,540
9335
2.4
74.0
<0.1 (0.3)
263.0 (394.4)

virus (H3N2)

Influenza B
P4
14,452
0
513
>513^f
0
9.8
0
2.6 (0.7)

virus

Human
P5
5596
1867
474,849
204
89.8
100.0
28.8 (17.9)
7,367.9 (4,193.0)

parvovirus B19

Norovirus GII-4
P6
7560
72
527,656
5,880
46.5
98.4
0.8 (1.1)
5,870.4 (8,194.3)

Parechovirus 1
P7
7339
0
13
>13^f
0
8.0
0
0.2 (0.6)

BK
P8
5142
1
1520
1220
1.6
88.6
<0.1 (0.1)
24.9 (32.2)

polyomavirus

JC
P9
5121
5
2760
443
8.6
98.5
0.1 (0.3)
46.3 (54.0)

polyomavirus

Human
P10
7134
8
9624
965
8.8
82.9
0.1 (0.3)
115.9 (170.3)

rhinovirus 15

Human

respiratory
P11
15,283
9
67,778
6042
3.0
89.5
<0.1 (0.3)
350.1 (1,667.2)

syncytial virus,

type B

Human
P12
152,261
0
14
>14^f
0
0.8
0
<0.1 (0.1)

herpesvirus 1

Torque teno
P13
3260
1
447
447
1.78
60.74
0.02 (0.13)
10.4 (23.4)

virus

Human
P14
125,030
0
834
>834^f
0
8.33
0
0.6 (3.5)

herpesvirus 3

Precapture indicates metagenomic shotgun sequencing without targeted sequence capture; post-capture, metagenomic shotgun sequencing using (ViroCap) targeted sequence capture.

^aViruses listed were incorporated into a viral pool that was subjected to MSS without and with targeted sequence capture, as described in the text.

^bViral reads per million sequences generated precapture and post-capture are statistically different (P < 0.0001, Wilcoxon test).

^cMSS of the virus pool without targeted sequence capture yielded 7,458,192 total reads.

^dMSS of the virus pool after targeted sequence capture yielded 9,295,438 total reads.

^ePVR (percentage viral reads) fold increase indicates percentage of post-capture viral reads divided by percentage of precapture viral reads.

^fPVR fold increase could not be calculated because the number of precapture reads was 0.

TABLE 2

Results of metagenomic shotgun sequencing for individual specimens before and after

viral targeted sequence capture.

Genome coverage

Viral sequence reads

Depth of

Total reads
Viral read

Breadth of
coverage

Virus
count^a

coverage (%)
(mean [SD])

Sample
Pre-
Post-
Virus(es)
length
Pre-
Post-
PVR fold
Pre-
Post-
Pre-
Post-

Sample type
ID
capture
capture
detected
(bp)
capture
capture
increase^b
capture
capture
capture
capture

Naso-
S1
4,202,474
16,080,640
Torque teno
2736
0
231
>231^e
0
74.4
0
5.2 (7.6)

pharyngeal

virus

swab

Human
35,269
15,116
7,703,787
133
89.6
100.0
36.1
19,097.4

adenovirus

(213.8)
(17,285.5)

B, type3

Naso-
S2
5,087,234
3,713,962
TTV-like mini
2912
0
249
>249^c
0
37.5
0
6.4 (18.1)

pharyngeal

virus isolate

swab

Human
36,002
87
116,502
1,834
15.3
100.0
0.2
283.1

adenovirus

(0.6)
(422.3)

C, type 1

Naso-
S3
5,139,462
4,094,568
Torque teno
2908
0
256
>256^c
0
22.7
0
6.4 (21.8)

pharyngeal

mini virus

swab

Human
15,462
172
262,806
1,918
39.5
99.9
1.0
1,462.1

parainfluenza

(1.6)
(1,767.0)

virus 3

Naso-
S4
6,124,424
5,659,554
TTV-like mini
2915
1
887
960
2.8
13.5
<0.1
23.9

pharyngeal

virus isolate

(0.2)
(105.7)

swab

Human
5543
4419
460,617
113
95.4
100.0
68.3
7,294.7

bocavirus 1

(94.1)
(3,443.1)

Naso-
S5
9,152,970
5,834,446
Torque teno
3741
0
56
>56^c
0
14.9
0
1.0 (3.2)

pharyngeal

virus

swab

Naso-
S6
10,179,884
12,064,068
Human
35,264
0
1071
>1071^c
0
75.3
0
2.6 (2.8)

pharyngeal

adenovirus

swab

B, type 3A

KI
5040
1034
411,173
336
83.4
100.0
18.4
7,373.2

polyomavirus

(20.5)
(7,123.3)

Human
7138
19,232
3,120,184
137
65.0
75.9
238.2
39,218.6

rhinovirus 80

(313.2)
(102,545.7)

Stool
S7
3,691,496
4,104,534
Human
36,006
3
9081
2,722
0.8
99.9
<0.1
22.9 (25.7)

adenovirus

(0.1)

C, type 1

Sapovirus
7429
33
61,982
1,689
23.3
100.0
0.4
740.1

(0.8)
(437.6)

Human
6816
6,641
1,140,900
155
99.9
100.0
85.1
14,725.6

astrovirus 1

(135.6)
(13,370.2)

Human
4939
0
81
>81^c
0
70.4
0
1.6 (1.6)

polyomavirus

10

Plasma
S8
10,875,448
7,088,360
Torque teno
3880
0
1817
>1817^c
0
38.2
0
37.0

virus

(105.0)

Human
161,573
38
27,523
1111
1.1
38.4
<0.1
14.2

herpesvirus

(0.2)
(112.9)

6B

Precapture indicates metagenomic shotgun sequencing without targeted sequence capture; post capture, metagenomic shotgun sequencing using (ViroCap) targeted sequence capture.

^aViral reads per million sequences generated precapture and post-capture are statistically different (P = 0.0002, Wilcoxon test).

^bPVR fold increase indicates percentage of post-capture viral reads divided by percentage of precapture viral reads.

^cIPVR fold increase could not be calculated because the number of precapture reads was zero.

TABLE 3

Viral reference genome database size representation in the ViroCap

targeted sequence capture panel.

Viral sequence representation (Mb)

Before targeted
After targeted

Reference sequence
sequence
sequence
Fold

database
selection
selection
reduction

NCBI RefSeq
26.9
26.9
0^‡

NCBI Genome
507.1
153.2
3.3

Neighbors

NCBI Influenza Viral
458.1
15.7
29.2

Resource

Virochip microarray
4.2
3.1
1.4

996.3
198.9
5

Sources of viral sequences included in the ViroCap panel include the complete representation of the viral genomes from NCBI's Reference Sequence (RefSeq) collection, complementary representation of unique regions from Genome Neighbor targets, selected representation of NCBI Influenza Virus Resource sequences, and the entirety of the probe space represented on the Virochip microarray (Guixia Yu et al. 2012), GEO accession number GPL15905

^‡Fold reduction is 0 because reference genomes were completely targeted.

TABLE 4

Genome coverage results based on metagenomic shotgun sequencing before and

after viral targeted sequence capture.

Virus

Sample
Sample

length

GenBank
GenBank

ID
type
Virus
(bp)
GenBank defintion
version
GI

P1
pooled
Human adenovirus
34794
Human adenovirus type 35 strain Holden
AY128640.2
GI:38196041

B, type 35

P2
pooled
Human bocavirus
5299
Human bocavirus DNA, strain: JP0006-077
AB481073.1
GI:223670841

1

P3
pooled
Influenza A virus
2341
Influenza A virus (A/New York/392/2004(H3N2))
NC_007373.1
GI:73919059

(H3N2)

segment 1

P4
pooled
Influenza B virus
2204
Influenza B virus RNA-3
NC_002206.1
GI:8486150

P5
pooled
Human parvovirus
5596
Human parvovirus B19
NC_000883.2
GI:356457872

B19

P6
pooled
Norovirus GII-4
7560
Norovirus Hu/GII.4/Armidale/NSW3901/2008/AU
GQ845369.3
GI:374674593

P7
pooled
Parechovirus 1
7339
Current classification: Parechovirus 1 (Former name:
LQ2971.1
GI:323688

Echovirus 22 lAB, 1C, 1D, 2A, 2B, 2C, 3A, 3B, 3C, 3D

proteins RNA)

P8
pooled
BK polyomavirus
5142
BK polyomavirus DNA, isolate: KEN-1
AB263926.1
GI:119926680

P9
pooled
JC polyomavirus
5121
JC virus DNA isolate:N4
AB048554.1
GI:15823368

P10
pooled
Human rhinovirus
7134
Human rhinovirus 15
DQ473493.1
GI:95102501

15

P11
pooled
Human respiratory
15283
Human respiratory syncytial virus strain NH1067
JQ582844.1
GI:384872840

syncytial virus,

type B

P12
pooled
Human
152261
Human herpesvirus 1
NC_001806.1
GI:9629378

herpesvirus 1

P13
pooled
Torque teno virus
3260
Torque teno virus strain SIA109
FJ426280.1
GI:217416834

P14
pooled
Human
125030
Human herpesvirus 3 strain 36
DQ479958.1
GI:94482166

herpesvirus 3

S1
single
Torque teno virus
3736
Torque teno virus 7
NC_014080.1
GI:295413954

S1
single
Human adenovirus
35269
Human adenovirus B strain Guangzhou02
DQ105654.4
GI:93308305

B, type 3

S2
single
TTV-like mini virus
2912
TTV-like mini virus isolate TTMV_LY1
NC_020498.1
GI:470457049

isolate

S2
single
Human adenovirus
36002
Human adenovirus C strain
JX173086.1
GI:406679291

C, type 1

human/USA/VT13862/2004/1[P1H1F1]

S3
single
Torque teno mini
2908
Torque teno mini virus 5
NC_014089.1
GI:295441877

virus

S3
single
Human

parainfluenza virus
15462
Human parainfluenza virus 3 strain ZHYMgz01
EU326526.1
GI:163866863

3

S4
single
TTV-like mini virus
2915
TTV-like mini virus isolate TTMV_LY3
JX134046.1
GI:459958124

isolate

S4
single
Human bocavirus
5543
Human bocavirus isolate Salvador1
JQ923422.1
GI:404159467

1

S5
single
Torque teno virus
3741
Torque teno virus, isolate tth21
AJ620217.1
GI:49202965

S6
single
Human adenovirus
35264
Human adenovirus B strain
JX423380.1
GI:402173169

B, type 3A

human/USA/ak32_AdV3a/2004/3[P3H3F3]

S6
single
KI polyomavirus
5040
K1 polyomavirus Stockholm 380
EF127908.1
GI:124366193

S6
single
Human rhinovirus
7138
Human rhinovirus 80 strain ATCC VR-1190
FJ445156.1
GI:217316442

80

S7
single
Human adenovirus
36006
Human adenovirus C strain
JX173085.1
GI:406679245

C, type 1

human/USA/VT2612/2003/1[P1H1F1]

S7
single
Sapovirus
7429
Sapovirus Chanthaburi-74/Thailand
AY646854.2
GI:380877195

S7
single
Human astrovirus
6816
Human astrovirus 1 strain
HQ398856.2
GI:313759913

1

Hu/Nyergesujfalu/HUN4520/2010/HUN

S7
single
Human
4939
Human polyomavirus 10 isolate 10ww
JX262162.1
GI:394995074

polyomavirus 10

S8
single
Torque teno virus
3880
Torque teno virus, isolate TTV-HD20d (ur0746)
FR751495.1
GI:339511371

S8
single
Human
161573
Human herpesvirus 6B DNA, strain: HST
AB021506.1
GI:4995977

herpesvirus 6B

Pre-capture: Metagenomic shotgun sequencing without targeted sequence capture

Standard

Percent

deviation

of reference
No. of
No. of
No. of
Ave.
Std dev of ave.
Median

Ave. gap
of ave.
Median
No. of

Sample
bases
reference
covered
Missing
coverage
coverage
coverage
No. of
length
gap length
gap length
reads

ID
covered^a
bases
bases
Bases
depth^b
depth
depth
gaps^c
(bp)
(bp)
(bp)
layered

P1
0.94
34794
328
34466
0.01
0.11
0
5
6893.2
6429.83
6259
5

P2
68.64
5299
3637
1662
1.79
1.98
1
20
83.1
87.51
49
110

P3
5.85
2341
137
2204
0.06
0.23
0
3
734.67
621.96
362
2

P4
0
2204
0
2204
0
NaN
0
1
2204
NaN
2204
0

P5
89.8
5596
5025
571
28.77
17.94
30
3
190.33
150.93
153
1867

P6
46.48
7560
3514
4046
0.8
1.13
0
25
161.84
162.37
128
72

P7
0
7339
0
7339
0
NaN
0
1
7339
NaN
7339
0

P8
1.58
5142
81
5061
0.02
0.12
0
2
2530.5
2000.5
2530.5
1

P9
8.59
5121
440
4681
0.09
0.28
0
6
780.17
1012.2
121
5

P10
8.8
7134
628
6506
0.09
0.31
0
8
813.25
1006.85
401
8

P11
3.04
15283
464
14819
0.04
0.27
0
6
2469.83
3426.67
985
9

P12
0
152261
0
152261
0
NaN
0
1
152261
NaN
152261
0

P13
1.78
3260
58
3202
0.02
0.13
0
2
1601
837
1601
1

P14
0
125030
0
125030
0
NaN
0
1
125030
NaN
125030
0

51
0
3736
0
3736
0
NaN
0
1
3736
NaN
3736
0

51
89.56
35269
31587
3682
36.14
213.75
6
43
85.63
145.97
45
15116

S2
0
2912
0
2912
0
NaN
0
1
2912
NaN
2912
0

S2
15.32
36002
5515
30487
0.2
0.57
0
47
648.66
1049.02
223
87

S3
0
2908
0
2908
0
NaN
0
1
2908
NaN
2908
0

S3
39.54
15462
6114
9348
0.95
1.62
0
33
283.27
444.82
108
172

S4
2.81
2915
82
2833
0.03
0.17
0
2
1416.5
1181.5
1416.5
1

S4
95.4
5543
5288
255
68.3
94.09
41
3
85
65.87
73
4419

S5
0
3741
0
3741
0
NaN
0
1
3741
NaN
3741
0

S6
0
35264
0
35264
0
NaN
0
1
35264
NaN
35264
0

S6
83.37
5040
4202
838
18.39
20.51
9
5
167.6
144.4
94

S7
99.94
6816
6812
4
85.05
135.62
24
1
4
NaN
4
6641

S7
0
4939
0
4939
0
NaN
0
1
4939
NaN
4939
0

S8
0
3880
0
3880
0
NaN
0
1
3880
NaN
3880
0

S8
1.1
161573
1771
159802
0.02
0.23
0
15
10653.47
11967.21
5510
38

Post-capture: Metagenomic shotgun sequencing using (ViroCap) targeted sequence capture

Percent

of

Std dev of

Ave.
Std dev of
Median

reference
No. of
No. of
No. of
Ave.
ave.
Median
No.
gap
ave. gap
gap
No. of

Sample
bases
reference
covered
Missing
coverage
coverage
coverage
of
length
length
length
reads

ID
covered^a
bases
bases
Bases
depth^b
depth
depth
gaps^c
(bp)
(bp)
(bp)
layered
ΔBoC^d

P1
83.57
34794
29076
5718
19.33
52.7
3
87
65.72
61.71
42
8103
82.63

P2
100
5299
5299
0
251.09
122.05
233
0
0
NaN
0
15277
31.36

P3
98.25
2341
2300
41
591.6
575.04
382
2
20.5
6.5
20.5
15528
92.4

P4
30.35
2204
669
1535
13.19
30.71
0
4
383.75
357.82
294
338
30.35

P5
100
5596
5596
0
7367.86
4193
7460
0
0
NaN
0
474849
10.2

P6
98.35
7560
7435
125
5870.35
8194.3
4296
4
31.25
36.18
15.5
527656
51.87

P7
7.97
7339
585
6754
0.15
0.58
0
6
1125.67
1545.22
94.5
13
7.97

P8
88.64
5142
4558
584
24.88
32.24
13
7
83.43
67.22
80
1520
87.06

P9
98.48
5121
5043
78
46.27
53.99
24
4
19.5
16.15
12
2760
89.89

P10
82.86
7134
5911
1223
115.85
170.32
40
10
122.3
121.68
83.5
9624
74.06

P11
89.45
15283
13671
1612
350.08
1667.22
30
20
80.6
96.83
43
67778
86.41

P12
0.78
152261
1189
151072
0.01
0.1
0
11
13733.8 2
13953.16
7959
0
0.78

P13
60.74
3260
1980
1280
10.41
23.43
2
10
128
139.87
51
447
58.96

P14
8.33
125030
10410
114620
0.58
3.52
0
60
1910.33
3636.15
166.5
834
8.33

S1
74.38
3736
2779
957
5.22
7.55
2
13
73.62
65.12
49
231
74.38

S1
99.98
35269
35261
8
19097.35
17285.52
13455
2
4
2
4
7703787
10.42

S2
37.5
2912
1092
1820
6.4
18.14
0
3
606.67
509.03
558
249
37.5

S2
100
36002
36002
0
283.11
422.28
114
0
0
NaN
0
116502
84.68

S3
22.66
2908
659
2249
6.44
21.77
0
3
749.67
621.73
452
256
22.66

S3
99.89
15462
15445
17
1462.12
1766.97
768
1
17
NaN
17
262806
60.35

S4
13.52
2915
394
2521
23.9
105.69
0
3
840.33
1180.63
7
887
10.71

S4
100
5543
5543
0
7294.73
3443.14
7246
0
0
NaN
0
460617
4.6

S5
14.89
3741
557
3184
1.02
3.24
0
5
636.8
507.21
716
56
14.89

S6
75.3
35264
26555
8709
2.56
2.76
2
102
85.38
113.63
41.5
1071
75.3

S6
100
5040
5040
0
7373.19
7123.25
5338
0
0
NaN
0
411173
16.63

S6
75.89
7138
5417
1721
39218.6
102545.72
1785
15
114.73
144.23
61
3120184
10.94

S7
99.87
36006
35960
46
22.92
25.7
17
4
11.5
12.99
4
9081
99.1

S7
99.95
7429
7425
4
740.14
437.61
682
1
4
NaN
4
61982
76.69

S7
100
6816
6816
0
14725.63
13370.21
9613.5
0
0
NaN
0
1140900
0.06

S7
70.42
4939
3478
1461
1.57
1.57
1
19
76.89
57.73
70
81
70.42

S8
38.17
3880
1481
2399
36.98
104.85
0
9
266.56
261.22
131
1817
38.17

S8
38.4
161573
62045
99528
14.24
112.94
1
351
283.56
467.84
148
27523
37.3

NA: Not applicable; NaN: Not a number

^aBreadth-of coverage as a percent of total reference length (No. of covered bases divided by No. of reference bases).

^bMean depth-of coverage across the reference length; calculated across all positions in the reference, whether covered or uncovered.

^cNumber of gapped (uncovered) areas in context of the reference sequence.

^dΔBoC: Breadth of-coverage change calculated by subtracting percent of reference bases covered, targeted sequence capture- metagenomic shotgun sequencing.

TABLE 5

Segment-level genome coverage results for influenza A and B based on metagenomic

shotgun sequencing before and after viral targeted sequence capture.

Pre-

% of
No.

or

ref
of

Std dev

Std dev
Median

post-

bases
refer-
No. of
No. of
Ave.
of ave.
Median
No.
Ave. gap
gap
gap
No. of

cap-
GenBank
cover-
ence
covered
Missing
coverage
coverage
coverage
of
length
length
length
reads

ture
defintion
ed^a
bases
bases
Bases
depth^b
depth
depth
gaps^c
(bp)
(bp)
(bp)
layered

Influenza A (sample P3, pre-capture)

Pre-
Influenza A
5.85
2341
137
2204
0.06
0.23
0
3
734.67
621.96
362
2

cap-
virus H3N2

ture
segment 1

(NC_007373.1)

Pre-
Influenza A
0
2341
0
2341
0
NaN
0
1
2341
NaN
2341
0

cap-
virus H3N2

ture
segment 2

(NC_007372.1)

Pre-
Influenza A
8.28
2233
185
2048
0.08
0.28
0
3
682.67
605.98
525
2

cap-
virus H3N2

ture
segment 3

(NC_007371.1)

Pre-
Influenza A
0
1762
0
1762
0
NaN
0
1
1762
NaN
1762
0

cap-
virus H3N2

ture
segment 4

(NC_007366.1)

Pre-
Influenza A
0
1566
0
1566
0
NaN
0
1
1566
NaN
1566
0

cap-
virus H3N2

ture
segment 5

(NC_007369.1)

Pre-
Influenza A
0
1467
0
1467
0
NaN
0
1
1467
NaN
1467
0

cap-
virus H3N2

ture
segment 6

(NC_007368.1)

Pre-
Influenza A
0
1027
0
1027
0
NaN
0
1
1027
NaN
1027
0

cap-
virus H3N2

ture
segment 7

(NC_007367.1)

Pre-
Influenza A
0
890
0
890
0
NaN
0
1
890
NaN
890
0

cap-
virus H3N2

ture
segment 8

(NC_007370.1)

2.36%
13627
322
13305
0.0175
0.255
0
12
1308.7925
613.97
1242.5
4

Influenza A (sample P3, post-capture)

Post-
Influenza A
98.25
2341
2300
41
591.6
575.04
382
2
20.5
6.5
20.5
15528

cap-
virus H3N2

ture
segment 1

(NC_007373.1)

Post-
Influenza A
68.56
2341
1605
736
158.84
327.77
6
3
245.33
158.49
169
4243

cap-
virus H3N2

ture
segment 2

(NC_007372.1)

Post-
Influenza A
90.82
2233
2028
205
405.08
444.68
217
2
102.5
41.5
102.5
10482

cap-
virus H3N2

ture
segment 3

(NC_007371.1)

Post-
Influenza A
94.32
1762
1662
100
79.31
92.95
40
3
33.33
27.78
20
1602

cap-
virus H3N2

ture
segment 4

(NC_007366.1)

Post-
Influenza A
56.13
1566
879
687
254.47
437.74
2
5
137.4
216.83
33
4469

cap-
virus H3N2

ture
segment 5

(NC_007369.1)

Post-
Influenza A
97.82
1467
1435
32
614.1
881.33
137
3
10.67
4.64
9
10211

cap-
virus H3N2

ture
segment 6

(NC_007368.1)

Post-
Influenza A
0
1027
0
1027
0
NaN
0
1
1027
NaN
1027
0

cap-
virus H3N2

ture
segment 7

(NC_007367.1)

Post-
Influenza A
19.66
890
175
715
0.46
1.11
0
3
238.33
232.54
132
5

cap-
virus H3N2

ture
segment 8

(NC_007370.1)

74.00%
13627
10084
3543
262.9825
0.1586
98
22
226.8825
98.3257
189.125
46540

Influenza B (sample P4, pre-capture)

Pre-
Influenza B
0
2368
0
2368
0
NaN
0
1
2368
NaN
2368
0

cap-
virus RNA 1

ture
(NC_002204.1)

Pre-
Influenza B
0
2313
0
2313
0
NaN
0
1
2313
NaN
2313
0

cap-
virus RNA 2

ture
(NC_002205.1)

Pre-
Influenza B
0
2204
0
2204
0
NaN
0
1
2204
NaN
2204
0

cap-
virus RNA 3

ture
(NC_002206.1)

Pre-
Influenza B
0
1882
0
1882
0
NaN
0
1
1882
NaN
1882
0

cap-
virus RNA 4

ture
(NC_002207.1)

Pre-
Influenza B
0
1841
0
1841
0
NaN
0
1
1841
NaN
1841
0

cap-
virus RNA 5

ture
(NC_002208.1)

Pre-
Influenza B
0
1557
0
1557
0
NaN
0
1
1557
NaN
1557
0

cap-
virus RNA 6

ture
(NC_002209.1)

Pre-
Influenza B
0
1191
0
1191
0
NaN
0
1
1191
NaN
1191
0

cap-
virus RNA 7

ture
(NC_002210.1)

Pre-
Influenza B
0
1096
0
1096
0
NaN
0
1
1096
NaN
1096
0

cap-
virus RNA 8

ture
(NC_002211.1)

0.00%
14452
0
14452
0
NaN
0
8
1806.5
NaN
1806.5
0

Influenza B (sample P4, post-capture)

Post-
Influenza B
0
2368
0
2368
0
NaN
0
1
2368
NaN
2368
0

cap-
virus RNA 1

ture
(NC_002204.1)

Post-
Influenza B
15.56
2313
360
1953
2.08
6.42
0
2
976.5
275.5
976.5
58

cap-
virus RNA 2

ture
(NC_002205.1)

Post-
Influenza B
30.35
2204
669
1535
13.19
30.71
0
4
383.75
357.82
294
338

cap-
virus RNA 3

ture
(NC_002206.1)

Post-
Influenza B
14.24
1882
268
1614
4.6
11.57
0
2
807
195
807
99

cap-
virus RNA 4

ture
(NC_002207.1)

Post-
Influenza B
0
1841
0
1841
0
NaN
0
1
1841
NaN
1841
0

cap-
virus RNA 5

ture
(NC_002208.1)

Post-
Influenza B
7.58
1557
118
1439
0.89
3.52
0
2
719.5
454.5
719.5
18

cap-
virus RNA 6

ture
(NC_002209.1)

Post-
Influenza B
0
1191
0
1191
0
NaN
0
1
1191
NaN
1191
0

cap-
virus RNA 7

ture
(NC_002210.1)

Post-
Influenza B
0
1096
0
1096
0
NaN
0
1
1096
NaN
1096
0

cap-
virus RNA 8

ture
(NC_002211.1)

9.79%
14452
1415
13037
2.595
0.6488
0
14
1172.84375
296.7109
1161.625
513

Pre-capture: Metagenomic shotgun sequencing without targeted sequence capture.

Post-capture: Metagenomic shotgun sequencing using (ViroCap) targeted sequence capture.

NA: Not applicable; NaN: Not a number

^aBreadth-of-coverage as a percent of total reference length (No. of covered bases divided by No. of reference bases).

^bMean depth-of-coverage across the reference length; calculated across all positions in the reference, whether covered or uncovered.

^cNumber of gapped (uncovered) areas in context of the reference sequence.

TABLE 6

Anellovirus contig coverage results based on metagenomic shotgun sequencing before

and after viral targeted sequence capture

ID
Source
Pre-capture read count
Post-capture read count
Scaffold ID
Reference length (bp)
Virus group

A1
SMAB-348-081811
34,752,298
79,300,498
scaffold_0
1838
Anellovirus

A9
SMAB-349-081111
21,501,318
25,028,624
scaffold_0
2710
Anellovirus

A10
SMAB-349-081111
21,501,318
25,028,624
scaffold_1
2701
Anellovirus

A11
SMAB-349-081111
21,501,318
25,028,624
scaffold_2
1514
Anellovirus

A12
SMAB-349-081111
21,501,318
25,028,624
scaffold_3
1415
Anellovirus

A13
SMAB-349-081111
21,501,318
25,028,624
scaffold_4
1397
Anellovirus

A14
SMAB-349-081111
21,501,318
25,028,624
scaffold_5
1385
Anellovirus

A15
SMAB-349-081111
21,501,318
25,028,624
scaffold_6
1055
Anellovirus

A16
SMAB-349-081111
21,501,318
25,028,624
scaffold_7
1053
Anellovirus

A17
SMAB-349-081111
21,501,318
25,028,624
scaffold_8
1042
Anellovirus

A20
SMAB-349-081111
21,501,318
25,028,624
scaffold_11
1590
Anellovirus

A48
SMAB-349-081611
34,141,152
7,187,742
scaffold_0
2991
Anellovirus

A49
SMAB-349-081611
34,141,152
7,187,742
scaffold_1
2390
Anellovirus

A50
SMAB-349-081611
34,141,152
7,187,742
scaffold_2
1747
Anellovirus

A51
SMAB-349-081611
34,141,152
7,187,742
scaffold_3
2193
Anellovirus

A52
SMAB-349-081611
34,141,152
7,187,742
scaffold_4
1040
Anellovirus

A81
SMAB-349-082311
36,651,918
14,426,400
scaffold_0
3243
Anellovirus

A82
SMAB-349-082311
36,651,918
14,426,400
scaffold_1
3164
Anellovirus

A83
SMAB-349-082311
36,651,918
14,426,400
scaffold_2
3110
Anellovirus

A84
SMAB-349-082311
36,651,918
14,426,400
scaffold_3
2923
Anellovirus

A85
SMAB-349-082311
36,651,918
14,426,400
scaffold_4
2348
Anellovirus

A86
SMAB-349-082311
36,651,918
14,426,400
scaffold_5
2301
Anellovirus

A87
SMAB-349-082311
36,651,918
14,426,400
scaffold_6
1270
Anellovirus

A88
SMAB-349-082311
36,651,918
14,426,400
scaffold_7
1247
Anellovirus

A89
SMAB-349-082311
36,651,918
14,426,400
scaffold_8
1432
Anellovirus

A110
SMAB-353-081611
21,184,852
11,155,204
scaffold_0
2628
Anellovirus

A111
SMAB-353-081611
21,184,852
11,155,204
scaffold_1
2546
Anellovirus

A112
SMAB-353-081611
21,184,852
11,155,204
scaffold_2
2334
Anellovirus

A113
SMAB-353-081611
21,184,852
11,155,204
scaffold_3
1616
Anellovirus

A114
SMAB-353-081611
21,184,852
11,155,204
scaffold_4
1672
Anellovirus

A115
SMAB-353-081611
21,184,852
11,155,204
scaffold_5
1328
Anellovirus

A116
SMAB-353-081611
21,184,852
11,155,204
scaffold_6
1116
Anellovirus

A117
SMAB-353-081611
21,184,852
11,155,204
scaffold_7
1111
Anellovirus

A118
SMAB-353-081611
21,184,852
11,155,204
scaffold_8
1019
Anellovirus

A119
SMAB-353-081611
21,184,852
11,155,204
scaffold_9
1005
Anellovirus

A149
SMAB-357-081611
21,920,676
5,402,270
scaffold_0
1290
Anellovirus

A150
SMAB-357-081611
21,920,676
5,402,270
scaffold_1
1245
Anellovirus

A151
SMAB-357-081611
21,920,676
5,402,270
scaffold_2
1231
Anellovirus

A162
SMAB-405-092711
21,502,312
16,696,432
scaffold_0
2951
Anellovirus

A163
SMAB-405-092711
21,502,312
16,696,432
scaffold_1
2736
Anellovirus

A164
SMAB-405-092711
21,502,312
16,696,432
scaffold_2
2392
Anellovirus

A165
SMAB-405-092711
21,502,312
16,696,432
scaffold_3
2323
Anellovirus

A166
SMAB-405-092711
21,502,312
16,696,432
scaffold_4
2722
Anellovirus

A167
SMAB-405-092711
21,502,312
16,696,432
scaffold_5
2166
Anellovirus

A168
SMAB-405-092711
21,502,312
16,696,432
scaffold_6
2154
Anellovirus

A169
SMAB-405-092711
21,502,312
16,696,432
scaffold_7
2078
Anellovirus

A170
SMAB-405-092711
21,502,312
16,696,432
scaffold_8
1984
Anellovirus

A171
SMAB-405-092711
21,502,312
16,696,432
scaffold_9
1751
Anellovirus

A172
SMAB-405-092711
21,502,312
16,696,432
scaffold_10
1714
Anellovirus

A173
SMAB-405-092711
21,502,312
16,696,432
scaffold_11
1711
Anellovirus

A174
SMAB-405-092711
21,502,312
16,696,432
scaffold_12
1575
Anellovirus

A175
SMAB-405-092711
21,502,312
16,696,432
scaffold_13
1550
Anellovirus

A176
SMAB-405-092711
21,502,312
16,696,432
scaffold_14
1504
Anellovirus

A177
SMAB-405-092711
21,502,312
16,696,432
scaffold_15
1091
Anellovirus

A178
SMAB-405-092711
21,502,312
16,696,432
scaffold_16
1064
Anellovirus

A179
SMAB-405-092711
21,502,312
16,696,432
scaffold_17
1041
Anellovirus

A180
SMAB-405-092711
21,502,312
16,696,432
scaffold_18
1030
Anellovirus

A181
SMAB-405-092711
21,502,312
16,696,432
scaffold_19
1024
Anellovirus

A219
SMAB-486-011712
32,045,168
12,929,988
scaffold_0
3280
Anellovirus

A220
SMAB-486-011712
32,045,168
12,929,988
scaffold_1
3230
Anellovirus

A221
SMAB-486-011712
32,045,168
12,929,988
scaffold_2
3206
Anellovirus

A222
SMAB-486-011712
32,045,168
12,929,988
scaffold_3
2694
Anellovirus

A223
SMAB-486-011712
32,045,168
12,929,988
scaffold_4
2403
Anellovirus

A224
SMAB-486-011712
32,045,168
12,929,988
scaffold_5
1346
Anellovirus

A225
SMAB-486-011712
32,045,168
12,929,988
scaffold_6
1342
Anellovirus

A226
SMAB-486-011712
32,045,168
12,929,988
scaffold_7
1259
Anellovirus

A227
SMAB-486-011712
32,045,168
12,929,988
scaffold_8
1213
Anellovirus

A228
SMAB-486-011712
32,045,168
12,929,988
scaffold_9
1135
Anellovirus

Pre-capture: Metagenomic shotgun sequencing using (ViroCap) targeted sequence capture

Ave.
Std dev

Ave.
Std dev
Median

% of ref
No.
No. of
No. of
cover-
of ave.
Median
No.
gap
ave.
gap
No. of

bases
of ref
covered
Missing
age
coverage
coverage
of
length
gap length
length
reads
%

ID
covered^a
bases
bases
Bases
depth^b
depth
depth
gaps^c
(bp)
(bp)
(bp)
layered
Viral Reads

A1
100
1838
1838
0
12248.74
12913.66
5291
0
0
NaN
0
271871
0.782310856

A9
100
2710
2710
0
38.46
22.66
40
0
0
NaN
0
1066
0.004957836

A10
98.45
2701
2659
42
18.45
10.29
18
1
42
NaN
42
505
0.002348693

A11
100
1514
1514
0
234.44
112.12
285
0
0
NaN
0
3619
0.016831526

A12
100
1415
1415
0
8.68
5.52
7
0
0
NaN
0
124
0.000576709

A13
100
1397
1397
0
9.54
5.44
9
0
0
NaN
0
135
0.000627868

A14
100
1385
1385
0
209.25
115.06
184
0
0
NaN
0
3110
0.01446423

A15
100
1055
1055
0
11.78
6.66
13
0
0
NaN
0
127
0.000590661

A16
100
1053
1053
0
11.2
6.11
10
0
0
NaN
0
120
0.000558105

A17
100
1042
1042
0
10.1
4.13
10
0
0
NaN
0
106
0.000492993

A20
100
1590
1590
0
28.07
14.76
29
0
0
NaN
0
455
0.002116149

A48
100
2991
2991
0
90.21
34.95
101
0
0
NaN
0
2747
0.008046009

A49
100
2390
2390
0
11.34
6.9
11
0
0
NaN
0
275
0.00080548

A50
99.94
1747
1746
1
60.14
31.43
60
1
1
NaN
1
1062
0.003110616

A51
99.77
2193
2188
5
116.1
73.05
114
2
2.5
1.5
2.5
2654
0.00777361

A52
100
1040
1040
0
10.25
5.19
10
0
0
NaN
0
109
0.000319263

A81
100
3243
3243
0
223.26
105.02
266
0
0
NaN
0
7420
0.020244507

A82
100
3164
3164
0
43.21
29.08
39
0
0
NaN
0
1384
0.003776064

A83
100
3110
3110
0
17.08
9.62
18
0
0
NaN
0
539
0.001470592

A84
100
2923
2923
0
25.61
44.93
19
0
0
NaN
0
813
0.002218165

A85
100
2348
2348
0
15.72
9.48
14
0
0
NaN
0
378
0.001031324

A86
100
2301
2301
0
256.54
200.42
226
0
0
NaN
0
5949
0.016231074

A87
100
1270
1270
0
362.37
248.3
372.5
0
0
NaN
0
4672
0.012746945

A88
100
1247
1247
0
9.39
3.98
9
0
0
NaN
0
117
0.000319219

A89
100
1432
1432
0
246.68
230.34
153
0
0
NaN
0
3761
0.0102614

A110
100
2628
2628
0
38.35
17.35
40
0
0
NaN
0
1022
0.004824202

A111
100
2546
2546
0
10.76
4.39
10
0
0
NaN
0
280
0.001321699

A112
100
2334
2334
0
27.37
11.34
27
0
0
NaN
0
658
0.003105993

A113
100
1616
1616
0
9.73
4.33
9
0
0
NaN
0
158
0.000745816

A114
99.94
1672
1671
1
30.06
14.42
29
1
1
NaN
1
509
0.00240266

A115
99 92
1328
1327
1
39.71
14.57
42
1
1
NaN
1
537
0.00253483

A116
100
1116
1116
0
12.86
8.16
13
0
0
NaN
0
144
0.000679731

A117
100
1111
1111
0
11.58
7.3
11
0
0
NaN
0
130
0.000613646

A118
100
1019
1019
0
5.3
2.24
6
0
0
NaN
0
56
0.00026434

A119
100
1005
1005
0
9.85
5.42
10
0
0
NaN
0
100
0.000472035

A149
100
1290
1290
0
18.25
12.6
17
0
0
NaN
0
237
0.001081171

A150
100
1245
1245
0
16.98
13.02
13
0
0
NaN
0
213
0.000971685

A151
100
1231
1231
0
5.52
3.87
4
0
0
NaN
0
69
0.000314771

A162
100
2951
2951
0
10.33
7.19
9
0
0
NaN
0
312
0.001451007

A163
100
2736
2736
0
18.7
8.15
19
0
0
NaN
0
521
0.002422995

A164
100
2392
2392
0
19.92
11.08
21
0
0
NaN
0
484
0.002250921

A165
100
2323
2323
0
54.48
30.95
67
0
0
NaN
0
1287
0.005985403

A166
100
2722
2722
0
115.96
80.55
122
0
0
NaN
0
3238
0.015058846

A167
99.86
2166
2163
3
49.71
27.65
60
1
3
NaN
3
1088
0.005059921

A168
100
2154
2154
0
88.06
55.06
95
0
0
NaN
0
1921
0.008933923

A169
100
2078
2078
0
24.78
15.07
23
0
0
NaN
0
518
0.002409043

A170
100
1984
1984
0
58.14
47.45
47
0
0
NaN
0
1168
0.005431974

A171
100
1751
1751
0
680.23
480.19
606
0
0
NaN
0
11993
0.055775398

A172
99.82
1714
1711
3
124.02
66.88
136
1
3
NaN
3
2153
0.010012877

A173
100
1711
1711
0
100.11
53.73
116
0
0
NaN
0
1731
0.008050297

A174
98.1
1575
1545
30
19.01
11.97
21
1
30
NaN
30
305
0.001418452

A175
100
1550
1550
0
14.53
7.37
13
0
0
NaN
0
231
0.001074303

A176
100
1504
1504
0
650.41
527.14
625
0
0
NaN
0
9916
0.046115971

A177
100
1091
1091
0
26.88
17.14
36
0
0
NaN
0
297
0.001381247

A178
100
1064
1064
0
19.61
14.92
16
0
0
NaN
0
218
0.001013844

A179
97.12
1041
1011
30
17.21
10.57
21
1
30
NaN
30
180
0.000837119

A180
100
1030
1030
0
14
10.33
12
0
0
NaN
0
144
0.000669695

A181
100
1024
1024
0
21.46
15.13
27
0
0
NaN
0
221
0.001027796

A219
100
3280
3280
0
318.79
234.86
325
0
0
NaN
0
10582
0.033022139

A220
100
3230
3230
0
33.84
12.88
36
0
0
NaN
0
1106
0.003451378

A221
100
3206
3206
0
68.26
47.05
62
0
0
NaN
0
2227
0.006949566

A222
100
2694
2694
0
73.69
47.87
85
0
0
NaN
0
2003
0.006250552

A223
100
2403
2403
0
23.89
12.49
27
0
0
NaN
0
585
0.001825548

A224
100
1346
1346
0
16.09
10.97
14
0
0
NaN
0
218
0.00068029

A225
98.81
1342
1326
16
28.36
20.66
21
1
16
NaN
16
387
0.00120767

A226
100
1259
1259
0
59.12
53.31
39
0
0
NaN
0
753
0.002349808

A227
100
1213
1213
0
39.08
24.64
41
0
0
NaN
0
486
0.001516609

A228
100
1135
1135
0
20.51
10.74
22
0
0
NaN
0
240
0.000748943

Post-capture: Metagenomic shotgun sequencing using (ViroCap) targeted sequence capture

% of

Std

ref

No.

dev
Me-

%

bases

of

Std dev

Ave.
ave.
dian

Viral

Scaf-
co-
No.
No. of
Miss-
Ave.
of ave.
Median
No.
gap
gap
gap
No. of
%
Reads

fold
ver-
of ref
covered
ing
coverage
coverage
coverage
of
length
length
length
reads
Viral
Fold

ID
ID
ed^a
bases
bases
Bases
depth^b
depth
depth
gaps^c
(bp)
(bp)
(bp)
layered
Reads
increase

A1
scaf-
99.95
1838
1837
1
3382358.61
2960741.89
2099195
1
1
NaN
1
67437000
85.040
108.703

fold_0

A9
scaf-
100
2710
2710
0
36255.34
56024.32
14982.5
0
0
NaN
0
1065198
4.256
858.423

fold_0

A10
scaf-
100
2701
2701
0
20096.17
9868.2
18695
0
0
NaN
0
567237
2.266
964.942

fold_1

A11
scaf-
100
1514
1514
0
426553.34
130908.42
4675349.5
0
0
NaN
0
6720533
26.851
1595.303

fold_2

A12
scaf-
96.11
1415
1360
55
3160.58
9562.3
132
2
27.5
10.5
27.5
50800
0.203
351.941

fold_3

A13
scaf-
100
1397
1397
0
1686.5
3654.17
201
0
0
NaN
0
26640
0.106
169.523

fold_4

A14
scaf-
100
1385
1385
0
331418.92
143019
347953
0
0
NaN
0
4996996
19.965
1380.310

fold_5

A15
scaf-
99.91
1055
1054
1
461.97
320.02
343
1
1
NaN
1
5520
0.022
37.339

fold_6

A16
scaf-
99.91
1053
1052
1
1526.3
1159.63
1477
1
1
NaN
1
17794
0.071
127.386

fold_7

A17
scaf-
99.9
1042
1041
1
116.94
81.59
90.5
1
1
NaN
1
1358
0.005
11.006

fold_8

A20
scaf-
99.94
1590
1589
1
5521.42
2758.03
5455.5
1
1
NaN
1
90871
0.363
171.570

fold_1

A48
scaf-
100
2991
2991
0
40395.71
15366.52
40940
0
0
NaN
0
1250081
17.392
2161.550

fold_0

A49
scaf-
97.82
2390
2338
52
392.77
536.37
211
1
52
NaN
52
10560
0.147
182.397

fold_1

A50
scaf-
100
1747
1747
0
3406.15
1892.25
3457
0
0
NaN
0
61553
0.856
275.303

fold_2

A51
scaf-
100
2193
2193
0
19055.83
18186.6
14239
0
0
NaN
0
427884
5.953
765.792

fold_3

A52
scaf-
100
1040
1040
0
361.5
259.79
258
0
0
NaN
0
3905
0.054
170.169

fold_4

A81
scaf-
99.97
3243
3242
1
109940.23
71253.1
98517
1
1
NaN
1
3695472
25.616
1265.333

fold_0

A82
scaf-
100
3164
3164
0
5835.68
9786.87
1623.5
0
0
NaN
0
193401
1.341
355.027

fold_1

A83
scaf-
100
3110
3110
0
9782.48
22916.84
5727
0
0
NaN
0
349290
2.421
1646.403

fold_2

A84
scaf-
100
2923
2923
0
13611.3
67753.26
593
0
0
NaN
0
505592
3.505
1579.968

fold_3

A85
scaf-
100
2348
2348
0
675.07
1065.57
285
0
0
NaN
0
17758
0.123
119.355

fold_4

A86
scaf-
100
2301
2301
0
32221.77
36026.86
16687
0
0
NaN
0
764059
5.296
326.303

fold_5

A87
scaf-
100
1270
1270
0
94213.43
78979.25
57959
0
0
NaN
0
1223808
8.483
665.502

fold_6

A88
scaf-
87.41
1247
1090
157
229.58
430.93
39
3
52.33
36.63
72
3587
0.025
77.890

fold_7

A89
scaf-
100
1432
1432
0
182518.02
177308.43
129813
0
0
NaN
0
2826112
19.590
1909.083

fold_8

A110
scaf-
100
2628
2628
0
28688.61
15711.83
24157
0
0
NaN
0
807302
7.237
1500.144

fold_0

A111
scaf-
100
2546
2546
0
4164.39
4035.7
3192
0
0
NaN
0
120028
1.076
814.090

fold_1

A112
scaf-
99.96
2334
2333
1
9257.96
12622.85
6241.5
1
1
NaN
1
244516
2.192
705.715

fold_2

A113
scaf-
99.88
1616
1614
2
141.65
132.32
91
2
1
NaN
1
2523
0.023
30.326

fold_3

A114
scaf-
100
1672
1672
0
25072.25
19058.74
20055
0
0
NaN
0
437526
3.922
1632.428

fold_4

A115
scaf-
99.92
1328
1327
1
34536.53
16308.98
29254.5
1
1
NaN
1
469416
4.208
1660.090

fold_5

A116
scaf-
100
1116
1116
0
3013.53
2124.7
2227
0
0
NaN
0
35526
0.318
468.524

fold_6

A117
scaf-
100
1111
1111
0
11264.15
7881.43
11882
0
0
NaN
0
130883
1.173
1912.000

fold_7

A118
scaf-
99.8
1019
1017
2
126.88
107.28
108
2
1
NaN
1
1483
0.013
50.292

fold_8

A119
scaf-
99.9
1005
1004
1
672.23
554.79
501
1
1
NaN
1
7207
0.065
136.868

fold_9

A149
scaf-
99.92
1290
1289
1
264.71
233.53
145
1
1
NaN
1
4272
0.079
73.141

fold_0

A150
scaf-
99.92
1245
1244
1
10209.4
13621.97
1858
1
1
NaN
1
131870
2.441
2512.141

fold_1

A151
scaf-
100
1231
1231
0
1735.51
1021.01
1651
0
0
NaN
0
22487
0.416
1322.392

fold_2

A162
scaf-
98.75
2951
2914
37
6797.55
21769.05
450
3
12.33
8.06
17
214072
1.282
883.622

fold_0

A163
scaf-
100
2736
2736
0
2520.44
2576.55
1932
0
0
NaN
0
73026
0.437
180.510

fold_1

A164
scaf-
99.62
2392
2383
9
1404.45
3778.63
276
1
9
NaN
9
42446
0.254
112.941

fold_2

A165
scaf-
100
2323
2323
0
5554.35
5104.61
3670
0
0
NaN
0
144832
0.867
144.926

fold_3

A166
scaf-
100
2722
2722
0
63408.26
207855.91
1232
0
0
NaN
0
2548000
15.261
1013.407

fold_4

A167
scaf-
99.91
2166
2164
2
5513.19
7021.36
3490
1
2
NaN
2
124695
0.747
147.598

fold_5

A168
scaf-
100
2154
2154
0
11353.51
8844.18
9644.5
0
0
NaN
0
257501
1.542
172.629

fold_6

A169
scaf-
99.09
2078
2059
19
254.76
327.1
116
2
9.5
0.5
9.5
6422
0.038
15.966

fold_7

A170
scaf-
100
1984
1984
0
26353.3
71853.17
3449
0
0
NaN
0
659791
3.952
727.487

fold_8

A171
scaf-
100
1751
1751
0
184578.07
259159.19
68402
0
0
NaN
0
3311416
19.833
355.588

fold_9

A172
scaf-
100
1714
1714
0
18936.09
11003.95
21219
0
0
NaN
0
336384
2.015
201.211

fold_10

A173
scaf-
100
1711
1711
0
11672.08
6609.58
12586
0
0
NaN
0
207222
1.241
154.170

fold_11

A174
scaf-
100
1575
1575
0
52030.8
28720.38
66614
0
0
NaN
0
867748
5.197
3663.998

fold_12

A175
scaf-
100
1550
1550
0
119679.86
384901.96
324
0
0
NaN
0
2130790
12.762
11879.281

fold_13

A176
scaf-
100
1504
1504
0
238031.38
467196.25
22091
0
0
NaN
0
4445764
26.627
577.393

fold_14

A177
scaf-
100
1091
1091
0
2427.26
2452.27
1354
0
0
NaN
0
30619
0.183
132.769

fold_15

A178
scaf-
99.91
1064
1063
1
1392.61
1525
770
1
1
NaN
1
15820
0.095
93.457

fold_16

A179
scaf-
97.89
1041
1019
22
1052.72
724.32
844
1
22
NaN
22
11506
0.069
82.322

fold_17

A180
scaf-
100
1030
1030
0
6807.7
15349.44
306
0
0
NaN
0
87586
0.525
783.310

fold_18

A181
scaf-
96.29
1024
986
38
235.2
148.88
212
1
38
NaN
38
2962
0.018
17.261

fold_19

A219
scaf-
100
3280
3280
0
99170.62
105634.57
62587
0
0
NaN
0
3429938
26.527
803.310

fold_0

A220
scaf-
100
3230
3230
0
11741.54
5561.51
11319.5
0
0
NaN
0
390863
3.023
875.858

fold_1

A221
scaf-
100
3206
3206
0
67579.79
33956.26
63616
0
0
NaN
0
2350955
18.182
2616.306

fold_2

A222
scaf-
100
2694
2694
0
6039.02
14066.03
1075.5
0
0
NaN
0
173604
1.343
214.804

fold_3

A223
scaf-
100
2403
2403
0
4739.73
2219.1
4485
0
0
NaN
0
119472
0.924
506.145

fold_4

A224
scaf-
99.33
1346
1337
9
459.27
988.44
57
1
9
NaN
9
7976
0.062
90.676

fold_5

A225
scaf-
100
1342
1342
0
10795.11
22495.63
238
0
0
NaN
0
157737
1.220
1010.153

fold_6

A226
scaf-
98.65
1259
1242
17
13553.61
25814.24
1351
1
17
NaN
17
182082
1.408
599.289

fold_7

A227
scaf-
99.92
1213
1212
1
653.52
880.84
148
1
1
NaN
1
9074
0.070
46.273

fold_8

A228
scaf-
96.12
1135
1091
44
1600.57
2908.16
66
1
44
NaN
44
19359
0.150
199.911

fold_9

Alignment to reference genomes

Bitscore

of align-
Percent

ment/kb
ID of

ID
GenBank version and GI
Reference description
Significance
length
alignment

A1
gi|1295413947|ref|NC_014078.1|
Torque teno virus 19, complete genome
0
790
74.11

A9
gi|217416834|gb|FJ426280.1|
Torque teno virus strain SIA109, complete genome
0
3353
90.32

A10
gi|5616144|gb|AF122917.1|
TT virus isolate JA4. complete genome
0
3740
93.15

A11
gi|1339511367|emb|FR751491.1|
Torque teno virus complete genome, isolate TTV- HD19 (rheu242)
0
2184
95.51

A12
gi|295413947|ref|NC_014078.1|
Torque teno virus 19. complete genome
1E−126
453
63.76

A13
gi|49203022|emb|AJ620231.1|
Torque teno virus, isolate tth8. complete genome
0
876
71.24

A14
gi|7657957|dbj|AB028669.1|
TT virus gene for ORF1 and ORF2. complete genome. isolate:TJN02
0
1624
92.03

A15
gi|7415914|dbj|AB038628.1|
TTV-like mini virus complete genome. isdate:TLMV-CLC205
0
874
79.90

A16
gi|7415914|dbj|AB038628.1|
TTV-like mini virus complete genome. isolate:TLMV-CLC205
0
919
77.89

A17
gi|49203001|emb|AJ620226.1|
Torque teno virus, isolate tth4, complete genome
1E−102
375
64.84

A20
gi|217416834|gb|FJ426280.1|
Torque teno virus strain SIA109, complete genome
0
943
84.54

A48
gi|7657957|dbj|AB028669.1|
TT virus gene for ORF1 and ORF2. complete genome. isolate:TJN02
0
3921
91.14

A49
gi|381140099|emb|FR848323.1|
Torque teno virus complete genome, isolate HD11 sle2037
1E−135
484
64.49

A50
gi|217416834|gb|FJ426280.1|
Torque teno virus strain SIA109, complete genome
0
1798
83.23

A51
gi|217416834|gb|FJ426280.1|
Torque teno virus strain SIA109, complete genome
0
2122
89.05

A52
gi|17827196|dbj|AB064597.1|
Torque teno virus DNA. complete genome, isolate: CT30F
1E−169
597
70.92

A81
gi|7657957|dbj|AB028669.1|
TT virus gene for ORF1 and ORF2, complete genome, isolate:TJN02
0
4303
91.69

A82
gi|17827189|dbj|AB064596.1|
Torque teno virus DNA. complete genome, isolate: CT25F {SQ 1-3126}
0
1220
63.94

A83
gi|149203001|emb|AJ620226.1|
Torque teno virus, isolate tth4, complete genome
0
4035
90.53

A84
gi|149203001|emb|AJ620226.1|
Torque teno virus, isolate tth4, complete genome
0
1440
70.50

A85
gi|381140099|emb|FR848323.1|
Torque teno virus complete genome, isolate HD11 sle2037
1E−143
511
65.15

A86
gi|217416834|gb|FJ426280.1|
Torque teno virus strain SIA109, complete genome
0
2594
85.96

A87
gi|217416834|gb|FJ426280.1|
Torque teno virus strain SIA109, complete genome
0
1779
93.93

A88
gi|339511366|emb|FR751490.1|
Torque teno virus complete genome, isolate TTV- HD18b (uro705)
1E−101
370
58.28

A89
gi|217416834|gb|FJ426280.1|
Torque teno virus strain SIA109, complete genome
0
1237
93.61

A110
gi|339511375|emb|FR751499.1|
Torque teno virus complete genome, isolate TTV- HD22 (rheul 12)
0
3556
92.46

A111
gi|295441905|ref|NC_014096.1|
Torque teno virus 15. complete genome
0
3418
91.98

A112
gi|I339832375|ref|NC_015783.1|
Torque teno virus, complete genome
0
2326
82.40

A113
gi|1339832375|ref|NC_015783.1|
Torque teno virus, complete genome
0
870
68.51

A114
gi|339832375|ref|NC_015783.1|
Torque teno virus, complete genome
0
2073
95.47

A115
gi|339832375|ref|NC_015783.1|
Torque teno virus, complete genome
0
1970
97.74

A116
gi|217416834|gb|FJ426280.1|
Torque teno virus strain SIA109, complete genome
0
1267
87.44

A117
gi|1339511369|emb|FR751493.1|
Torque teno virus complete genome, isolate TTV- HD20b (uro742)
0
1356
88.48

A118
gi|381140099|emb|FR848323.1|
Torque teno virus complete genome, isolate HD11 sle2037
1E−121
437
67.84

A119
gi|339832375|ref|NC_015783.1|
Torque teno virus, complete genome
1E−170
599
70.81

A149
gi|1134133206|ref|NC_009225.1|
Torque teno midi virus 1, complete genome
1E−111
405
64.80

A150
gi|1295441891|ref|NC_014093.1|
Torque teno midi virus 2, complete genome
0
668
69.02

A151
gi|17827243|dbj|AB064604.1|
Torque teno virus DNA. complete genome, isolate: CT39F
0
1233
85.50

A162
gi|1295413928|ref|NC_014076.1|
Torque teno virus 10. complete genome
0
993
74.15

A163
gi|339832375|ref|NC_015783.1|
Torque teno virus, complete genome
0
2624
81.00

A164
gi|58613381|gb|AY823988.1|
Torque teno virus isolate 2h, complete genome
1E−104
381
65.35

A165
gi|7415914|dbj|AB038628.1|
TTV-like mini virus complete genome, isolate:TLMV-CLC205
0
1239
79.72

A166
gi|58613386|gb|AY823989.1|
Torque teno virus isolate 3h, complete genome
2E−83
313
88.93

A167
gi|58613386|gb|AY823989.1|
Torque teno virus isolate 3h, complete genome
0
1034
78.99

A168
gi|1339511369|emb|FR751493.1|
Torque teno virus complete genome, isolate TTV- HD20b <uro742)
0
1898
78.30

A169
gi|6463708|dbj|AB026930.1|
TTV-like mini virus DNA, complete genome, isolate: TLMV-CBD231
1E−171
603
66.05

A170
gi|1339511375|emb|FR751499.1|
Torque teno virus complete genome, isolate TTV- HD22 (rheul 12)
1E−123
446
61.87

A171
gi|381140099|emb|FR848323.1|
Torque teno virus complete genome, isolate HD11 sle2037
1E−111
405
61.95

A172
gi|217416834|gb|FJ426280.1|
Torque teno virus strain SIA109, complete genome
0
1959
86.75

A173
gi|217416834|gb|FJ426280.1|
Torque teno virus strain SIA109, complete genome
0
1848
84.69

A174
gi|156104001|emb|AM711976.1|
TT virus slel957 complete genome
0
2146
94.04

A175
gi|295413928|ref|NC_014076.1|
Torque teno virus 10, complete genome
0
1020
71.48

A176
gi|339511375|emb|FR751499.1|
Torque teno virus complete genome, isolate TTV- HD22 (rheul 12)
1E−122
442
62.00

A177
gi|1339511369|emb|FR751493.1|
Torque teno virus complete genome, isolate TTV- HD20b (uro742)
0
973
78.07

A178
gi|295441905|ref|NC_014096.1|
Torque teno virus 15, complete genome
1E−151
538
67.56

A179
gi|1339511365|emb|FR751489.1|
Torque teno virus complete genome, isolate TTV- HD18a (uro703)
0
698
74.47

A180
gi|1295441891|ref|NC_014093.1|
Torque teno midi virus 2, complete genome
1E−141
504
62.97

A181
gi|1295441884|ref|NC_014091.1|
Torque teno virus 16, complete genome
1E−106
388
63.05

A219
gi|217416834|qb|FJ426280.1|
Torque teno virus strain SIA109, complete genome
0
4059
90.67

A220
gi|295441884|ref|NC_014091.1|
Torque teno virus 16, complete genome
0
4352
91.49

A221
gi|49202965|emb|AJ620217.1|
Torque teno virus, isolate tth21. complete genome
0
4602
94.26

A222
gi|1339511366|emb|FR751490.1|
Torque teno virus complete genome, isolate TTV- HD18b (uro705)
0
686
66.00

A223
gi|17827196|dbj|AB064597.1|
Torque teno virus DNA. complete genome, isolate: CT30F
0
1855
94.64

A224
gi|1295441884|ref|NC_014091.1|
Torque teno virus 16, complete genome
1E−110
402
61.71

A225
gi|1134133206|ref|NC_009225.1|
Torque teno midi virus 1, complete genome
0
648
68.54

A226
gi|52854167|gb|AY622909.1|
Small anellovirus 2, complete genome
1E−131
472
62.89

A227
gi|295441891|ref|NC_014093.1|
Torque teno midi virus 2, complete genome
1E−113
412
60.65

A228
gi|66391749|ref|NC_007013.1|
Small anellovirus 1, complete genome
1E−129
464
63.36

NA: Not applicable: NaN: Not a number

^aBreadth-of-coverage as a percent of total reference length (No. of covered bases divided by No. of reference bases).

^bMean depth-of-coverage across the reference length; calculated across all positions in the reference, whether covered or uncovered.

^cNumber of gapped (uncovered) areas in context of the reference sequence.

TABLE 7

Non-viral read classification based on metagenomic shotgun sequencing before and

after viral targeted sequence capture.

Non-viral red filtering
Non-viral read identitities^a

% of reads
% of
% of

% of

% of
passing mask
reads passing
capture
% of

% of
total non-

Pre- or

% viral
Total
reads passing
and adaptor
mask, adaptor, and
positive
bacterial &
% of
NCBInt
viral reads

Virus(es)
post-
Total
reads (viral
non-viral
mask filter
filters
technical filters
control reads
fungal reads
human reads
reads
mapped

Sample type
Sample ID
detected
capture
reads
read count)
reads
(read count)
(read count)
(read count)
(read count)
(read count)
(read count)
(read count)^b
(read count)

Naso-
S1
Torque
Pre-
4,202,474
0.4%
4,187,358
83.7%
79.7%
79.1%
0%
12.4%
76.8%
1.7%
90.9%

pharyngeal

teno virus;
capture

(15,116)

(3,503,645)
(3,336,097)
(3,314,130)
(0)
(409,536)
(2,543,675)
(57,503)
(3,010,714)

swab

Human
Post-
16,080,640
47.9%
8,376,622
84.6%
81.3%
80.5%
<0.1%
9.7%
83.6%
1.5%
94.8%

adenovirus
capture

(7,704,018)

(7,084,765)
(6,813,094)
(6,746,513)
(286)
(656,181)
(5,638,382)
(99,944)
(6,394,793)

B, type 3

Naso-
S2
TTV-like
Pre-
5,087,234
<0.1%
5,087,147
87.8%
81.9%
81.3%
0%
10.9%
74.2%
1.8%
86.9%

pharyngeal

mini virus
capture

(87)

(4,466,890)
(4,166,363)
(4,138,127)
(0)
(451,687)
(3,069,110)
(74,979)
(3,595,776)

swab

isolate;
Post-
3,713,962
3.1%
3,597,211
85.9%
82.7%
82.0%
<0.1%
14.2%
78.1%
2.4%
94.7%

Human
capture

(116,751)

(3,090,139)
(2,974,892)
(2,948,339)
(701)
(417,605)
(2,303,865)
(70,786)
(2,792,957)

adenovirus

C, type 1

Naso-
S3
Torque
Pre-
5,139,462
<0.1%
5,139,290
82.9%
78.0%
77.4%
0%
11.4%
70.8%
1.6%
83.8%

pharyngeal

teno mini
capture

(172)

(4,262,698)
(4,007,111)
(3,979,138)
(0)
(454,766)
(2,816,455)
(62,313)
(3,333,534)

swab

virus;
Post-
4,094,568
6.4%
3,831,506
80.2%
77%
76.1%
<0.1%
14.4%
77.4%
2.4%
94.1%

Human
capture

(263,062)

(3,073,249)
(2,950,353)
(2,915,835)
(931)
(418,290)
(2,255,930)
(69,352)
(2,744,503)

parainfluenza

virus 3

Naso-
S4
TTV-like
Pre-
6,124,424
0.7%
6,120,004
88.6%
84.7%
84.2%
<0.1%
13.5%
76.9%
2.2%
92.5%

pharyngeal

mini virus
capture

(4,420)

(5,424,487)
(5,185,684)
(5,153,877)
(1)
(693,606)
(3,961,449)
(110,525)
(4,765,581)

swab

isolate;
Post-
5,659,554
8.2%
5,198,050
86.5%
83.5%
82.8%
<0.1%
15.5%
77.4%
2.4%
95.3%

Human
capture

(461,504)

(4,496,347)
(4,337,848)
(4,302,342)
(707)
(665,350)
(3,329,053)
(103,954)
(4,099,064)

bocavirus

1

Naso-
S5
Torque
Pre-
9,152,970
0% (0)
9,152,970
84.5%
78.2%
77.7%
<0.1%
8.3%
73.4%
2.2%
83.9%

pharyngeal

teno virus
capture

(7,732,422)
(7,161,848)
(7,108,816)
(1)
(591,923)
(5,214,849)
(154,617)
(5,961,390)

swab

Post-
5,834,446
<0.1%
5,834,329
81.5%
78.3%
77.4%
<0.1%
12.2%
79.4%
3.0%
94.6%

capture

(117)

(4,756,869)
(4,565,673)
(4,515,441)
(1076)
(550,019)
(3,584,353)
(133,939)
(4,269,387)

Naso-
S6
Human
Pre-
10,179,884
0.2%
10,159,618
81.6%
76.0%
74.7%
0%
12.6%
73.5%
1.0%
87.2%

pharyngeal

adenovirus
capture

(20,266)

(8,291,060)
(7,724,167)
(7,589,505)
(0)
(958,739)
(5,580,948)
(76,349)
(6,616,036)

swab

884
Post-
12,064,068
29.3%
8,531,640
81.6%
78.3%
78.2%
<0.1%
14.2%
77.6%
5.5%
97.3%

B, type
capture

(3,532,428)

(6,959,285)
(6,676,571)
(6,673,856)
(21)
(948,331)
(5,180,714)
(364,115)
(6,493,181)

3A; KI

polyo-

mavirus;

Human

rhinovirus

80

Stool
S7
Human
Pre-
3,691,496
0.2%
3,684,819
94.9%
90.9%
90.0%
0%
81.3%
0.1%
2.6%
84.0%

polyo-
capture

(6,677)

(3,495,587)
(3,347,941)
(3,316,041)
(0)
(2,695,411)
(4,197)
(86,288)
(2,.785,896)

mavirus 10;
Post-
4,104,534
29.5%
2,892,490
97.2%
94.1%
88.0%
<0.1%
85.9%
0.2%
2.9%
89.0%

Human
capture

(1,212,044)

(2,810,676)
(2,721,582)
(2,544,964)
(3)
(2,185,234)
(5,404)
(74,491)
(2,265,132)

adenovirus

C, type

1;

Sapovirus;

Human

astrovirus.

Plasma
S8
Torque
Pre-
10,875,448
<0.1%
10,875,410
90.8%
87.2%
86.7%
0%
13.9%
82.8%
1.8%
98.5%

teno virus;
capture

(38)

(9,879,901)
(9,484,536)
(9,428,692)
(0)
(1,309,676)
(7,804,535)
(172,740)
(9,286,951)

Human
Post-
7,088,360
0.4%
7,059,020
88.6%
85.1%
84.5%
<0.1%
16.0%
80.4%
2.0%
98.5%

herpesvirus
capture

(29,340)

(6,254,894)
(6,006,307)
(5,967,078)
(569)
(954,182)
(4,798,804)
(121,960)
(5,875,515)

6B

Pooled
P1-
Human
Pre-
7,458,192
<0.1%
7,456,111
88.3%
84.2%
83.5%
0%
19.3%
76.6%
1.9%
97.8%

P14
adenovirus
capture

(2,081)

(6,584,766)
(6,277,629)
(6,224,995)
(0)
(1,203,117)
(4,766,963)
(118,491)
(6,088,571)

B, type
Post-
9,295,438
12.4%
8,140,791
84.8%
80.8%
78.3%
0.1%
19.2%
78.8%
1.9%
99.9%

35;
capture

(1,154,647)

(6,901,118)
(6,581,271)
(6,376,862)
(2,938)
(1,224,264)
(5,024,459)
(121,258)
(6,372,919)

Human

bocavirus

1;

Influenza

A virus

(H3N2);

Influenza

B virus;

Human

parvovirus

B19;

Norovirus

GII-4;

Parechovir

us 1; BK

polyomavi

rus; JC

polyomavi

rus;

Human

rhinovirus

15;

Human

respiratory

syncytial

virus, type

B; Human

herpesvirus

1;

Torque

teno virus;

Human

herpesvirus

3

Pre-capture: Metagenomic shotgun sequencing without targeted sequence capture.

Post-capture: Metagenomic shotgun sequencing using (ViroCap) targeted sequence capture.

^aNon-viral read identities as percent of total reads passing mask, adaptor, and technical filters.

^bThe percentage of reads that mapped to the NCBl nt nucleotide database (ftp://ftp.ncbi.nlm.nih.gov/blast/db/)

TABLE 8

ViroCap and PCR correlations.

PCR

Sample

Virus identified in
results
Sequencing

ID from

Sample
clinical laboratory
on
results on

Table 1
Sample
type
prior to pooling
pool
pool

P1
Pooled
Pool
Adenovirus
+
+

clinical

samples

P2
Pooled
Pool
Human Bocavirus
+
+

clinical

samples

P3
Pooled
Pool
Influenza A
+
+

clinical

samples

P4
Pooled
Pool
Influenza B
+
+

clinical

samples

P5
Pooled
Pool
Parvovirus
+
+

clinical

samples

P6
Pooled
Pool
Norovirus G2
+
+

clinical

samples

P7
Pooled
Pool
Parechovirus 1
+
+

clinical

samples

P8
Pooled
Pool
BK polyomavirus
+
+

clinical

samples

P9
Pooled
Pool
JC polyomavirus
+
+

clinical

P10
samples
Pool
Rhinovirus
+
+

Pooled

clinical

P11
samples
Pool
Respiratory
+
+

Pooled

syncytial virus

clinical

P12
samples
Pool
HSV-1
+
+

Pooled

clinical

P13
samples
Pool
Torque teno virus
Not
+

Pooled

tested

clinical

P14
samples
Pool
HHV-3
−
+

Pooled

clinical

NA
samples
Pool
HHV-6
−
−

Pooled

clinical

NA
samples
Pool
Enterovirus
−
−

Pooled

clinical

NA
samples
Pool
Parainfluenzavirus 1
+
−

Pooled

NA
clinical
Pool
Parainfluenzavirus 3

samples

Pooled

NA
clinical
Pool
Parainfluenzavirus 4
+
−

samples

Pooled

NA
clinical
Pool
Human
−
−

samples

metapneumovirus

Pooled

NA
clinical
Pool
HHV-8
−
−

samples

Pooled

NA
clinical
Pool
HHV-4
−
−

samples

Pooled

TABLE 9

Detection of viruses by PCR and ViroCap.

Number of viruses detected by:

Either PCR
Both PCR

ViroCap

Experiment
or ViroCap
and ViroCap
PCR only
only

1
15^a
12
2^b
1^c

(pooled

clinical

specimens)

2
26
18
8^d,e
0

(individual

specimens)

Total
41
30
10
1

^aTable does not include a torque teno virus detected in the clinical pool but not tested for by PCR

^bParainfluenza virus types 1 and 4; These viruses were detected by PCR with high crossing threshold (Ct) values, indicating very low levels of virus.

^cVaricella-zoster virus

^dRhinovirus; This virus was detected by PCR with high crossing threshold (Ct) values, indicating very low levels of virus.

^eOf the 8 viruses detected in the samples by PCR but not by sequencing, 7 were not detected in the sequencing libraries, indicating that the failure to detect was attributable to library preparation rather than ViroCap.

TABLE 10

ViroCap-1.0 Taxonomy

#
Seg.

Taxonomy
Rep.Acc.ID
Host
GN's
Lineage
Count
GN.Acc.IDs

Bovine ephemeral fever
NC_002526
invertebrates,vertebrates
1
Rhabdoviridae,Ephemerovirus,Bovine
-b
AF234533

virus

ephemeral fever virus

Kotonkan virus
NC_017714
invertebrates,vertebrates
1
Rhabdoviridae,Ephemerovirus,Kotonkan virus
—
HM474855

Murrumbidgee virus
NC_022595
invertebrates,vertebrates
1
Bunyaviridae,Orthobunyavirus,Murrumbidgee
seg. L
KF234253

virus

Murrumbidgee virus
NC_022596
invertebrates,vertebrates
1
Bunyaviridae,Orthobunyavirus,Murrumbidgee
seg. M
KF234254

virus

Murrumbidgee virus
NC_022597
invertebrates,vertebrates
1
Bunvirusyaviridae,Orthobunyavirus,Murrumbidgee
seg. S
KF234255

Ngaingan virus
NC_013955
invertebrates,vertebrates
1
Rhabdoviridae,Ngaingan virus
—
FJ715959

Tibrogargan virus
NC_020804
invertebrates,vertebrates
1
Rhabdoviridae,Tibrovirus,Tibrogargan virus
—
GQ294472

Circovirus-like genome
NC_013020
unknown
1
Circovirus-like genome BBC-A
—
FJ959086

BBC-A

Circovirus-like genome CB-
NC_013028
unknown
1
Circovirus-like genome CB-A
—
FJ959082

A

Circovirus-like genome CB-
NC_013029
unknown
1
Circovirus-like genome CB-B
—
FJ959083

B

Circovirus-like genome
NC_013023
unknown
1
Circovirus-like genome RW-A
—
FJ959077

RW-A

Circovirus-like genome
NC_013024
unknown
1
Circovirus-like genome RW-B
—
FJ959078

RW-B

Circovirus-like genome
NC_013025
unknown
1
Circovirus-like genome RW-C
—
FJ959079

RW-C

Circovirus-like genome
NC_013026
unknown
1
Circovirus-like genome RW-D
—
FJ959080

RW-D

Circovirus-like genome
NC_013027
unknown
1
Circovirus-like genome RW-E
—
FJ959081

RW-E

Circovirus-like genome
NC_013030
unknown
1
Circovirus-like genome SAR-A
—
FJ959084

SAR-A

Circovirus-like genome
NC_013018
unknown
1
Circovirus-like genome SAR-B
—
FJ959085

SAR-B

Dragonfly larvae
NC_023427
unknown
1
Dragonfly larvae associated circular virus-1
—
KF738873

associated circular virus-1

Dragonfly larvae
NC_023436
unknown
2
Dragonfly larvae associated circular virus-10
—
KF738885,KF738884

associated circular virus-10

Dragonfly larvae
NC_023428
unknown
1
Dragonfly larvae associated circular virus-2
—
KF738874

associated circular virus-2

Dragonfly larvae
NC_023429
unknown
2
Dragonfly larvae associated circular virus-3
—
KF738875,KF738876

associated circular virus-3

Dragonfly larvae
NC_023430
unknown
1
Dragonfly larvae associated circular virus-4
—
KF738877

associated circular virus-4

Dragonfly larvae
NC_023431
unknown
2
Dragonfly larvae associated circular virus-5
—
KF738878,KF738879

associated circular virus-5

Dragonfly larvae
NC_023432
unknown
1
Dragonfly larvae associated circular virus-6
—
KF738880

associated circular virus-6

Dragonfly larvae
NC_023433
unknown
1
Dragonfly larvae associated circular virus-7
—
KF738881

associated circular virus-7

Dragonfly larvae
NC_023434
unknown
1
Dragonfly larvae associated circular virus-8
—
KF738882

associated circular virus-8

Dragonfly larvae
NC_023435
unknown
1
Dragonfly larvae associated circular virus-9
—
KF738883

associated circular virus-9

Marine RNA virus JP-A
NC_009757
unknown
1
Marine RNA virus JP-A
—
EF198241

Marine RNA virus JP-B
NC_009758
unknown
1
Marine RNA virus JP-B
—
EF198242

Marine RNA virus SOG
NC_009756
unknown
1
Marine RNA virus SOG
—
EF198240

Ostreid herpesvirus 1
NC_005881
unknown
1
Malacoherpesviridae,Ostreavirus,Ostreid
—
AY509253

herpesvirus 1

Pig stool associated
NC_017916
unknown
8
Pig stool associated circular ssDNA virus
—
JX305996,JX305993,

circular ssDNA virus

JX305991,JX305997,

JX305998,JX305992,

JX305994,JX305995

Pig stool associated
NC_017916
unknown
1
Pig stool associated circular ssDNA virus
—
JQ023166

circular ssDNA virus

GER2011

Pithovirus sibericum
NC_023423
unknown
1
Pithovirus sibericum
—
KF740664

Porcine associated stool
NC_018617
unknown
1
Porcine associated stool circular virus
—
JX274036

circular virus

Porcine stool-associated
NC_021203
unknown
1
Porcine stool-associated circular virus 2
—
KC545226

circular virus 2

Porcine stool-associated
NC_021204
unknown
4
Porcine stool-associated circular virus 3
—
KC545228,KC545229,

circular virus 3

KC545227,KC545230

Sclerotinia sclerotiorum
NC_013116
unknown
5
Sclerotinia sclerotiorum hypovirulence
—
KF268026,KF268027,

hypovirulence associated

associated DNA virus 1

KF268028,GQ365709,

DNA virus 1

KF268025

Wallerfield virus
NC_023440
unknown
1
Negevirus,Wallerfield virus
—
KF042857

AKR (endogenous) murine
NC_001702
vertebrates
1
Retroviridae,Gammaretrovirus,Murine
—
JQ1998

leukemia virus
,NC_00181

leukemia virus

9,NC_0013

62,NC_001

501

ARV-138
NC_015132
vertebrates
1
Reoviridae,Orthoreovirus,Avian orthoreovirus
seg.
AF218359

S1

ARV-176
NC_015132
vertebrates
1
Reoviridae,Orthoreovirus,Avian orthoreovirus
seg.
AF218358

S1

Abelson murine leukemia
NC_001499
vertebrates
1
Retroviridae,Gammaretrovirus,Abelson murine
—
AF033812

virus

leukemia virus

Acartia tonsa copepod
NC_020099
vertebrates
1
Circoviridae,Circovirus,Acartia tonsa copepod
—
JQ837277

circovirus

circovirus

Adeno-associated virus-1
NC_002077
vertebrates
1
Parvoviridae,Dependovirus,Adeno-associated
—
AF063497

virus-1

Adeno-associated virus-4
NC_001829
vertebrates
1
Parvoviridae,Dependovirus,Adeno-associated
—
U89790

virus-4

Adeno-associated virus-6
NC_002077
vertebrates
1
Parvoviridae,Dependovirus,Adeno-associated
—
AF028704

virus-1

Adeno-associated virus-7
NC_006260
vertebrates
1
Parvoviridae,Dependovirus,Adeno-associated
—
AF513851

virus-7

Adeno-associated virus-8
NC_006261
vertebrates
1
Parvoviridae,Dependovirus,Adeno-associated
—
AF513852

virus-8

African elephant
NC_022519
vertebrates
1
Polyomaviridae,Polyomavirus,African elephant
—
KF147833

polyomavirus 1

polyomavirus 1

African green monkey
NC_004763
vertebrates
1
Polyomaviridae,Polyomavirus,African green
—
K02562

polyomavirus

monkey polyomavirus

African green monkey
NC_010820
vertebrates
1
Retroviridae,Spumavirus,African green
—
M74895

simian foamy virus

monkey simian foamy virus

Aichi virus
NC_001918
vertebrates
10
Picornaviridae,Kobuvirus,Aichivirus A
—
FJ890523,DQ028632,

AY747174,GQ927704

,JX564249,GQ92770

5,GQ927712,AB0407

49,GQ927706,GQ927

711

Aichi virus 1
NC_001918
vertebrates
1
Picornaviridae,Kobuvirus,Aichivirus A
—
AB010145

Alcelaphine herpesvirus 1
NC_002531
vertebrates
1
Herpesviridae,Macavirus,Alcelaphine
—
AF005370

herpesvirus 1

Aleutian mink disease virus
NC_001662
vertebrates
6
Parvoviridae,Amdovirus,Aleutian mink disease
—
GU269892,JN040434

virus

,Z18276,M20036,GU

183264,GU183265

Ambystoma tigrinum virus
NC_005832
vertebrates
1
Indoviridae,Ranavirus,Ambystoma tigrinum
—
AY150217

virus

American bat vesiculovirus
NC_022755
vertebrates
1
Rhabdoviridae,Vesiculovirus,American bat
—
JX569193

TFFN-2013

vesiculovirus TFFN-2013

American grass carp
NC_010584
vertebrates
1
Reoviridae,Aquareovirus,Aquareovirus G
seg. 1
EF589098

reovirus

American grass carp
NC_010585
vertebrates
1
Reoviridae,Aquareovirus,Aquareovirus G
seg. 2
EF589099

reovirus

American grass carp
NC_010586
vertebrates
1
Reoviridae,Aquareovirus,Aquareovirus G
seg. 3
EF589100

reovirus

American grass carp
NC_010587
vertebrates
1
Reoviridae,Aquareovirus,Aquareovirus G
seg. 4
EF589101

reovirus

American grass carp
NC_010588
vertebrates
1
Reoviridae,Aquareovirus,Aquareovirus G
seg. 5
EF589102

reovirus

American grass carp
NC_010589
vertebrates
1
Reoviridae,Aquareovirus,Aquareovirus G
seg. 6
EF589103

reovirus

American grass carp
NC_010590
vertebrates
1
Reoviridae,Aquareovirus,Aquareovirus G
seg. 7
EF589104

reovirus

American grass carp
NC_010591
vertebrates
1
Reoviridae,Aquareovirus,Aquareovirus G
seg. 8
EF589105

reovirus

American grass carp
NC_010592
vertebrates
1
Reoviridae,Aquareovirus,Aquareovirus G
seg. 9
EF589106

reovirus

American grass carp
NC_010593
vertebrates
1
Reoviridae,Aquareovirus,Aquareovirus G
seg.
EF589107

reovirus

10

American grass carp
NC_010594
vertebrates
1
Reoviridae,Aquareovirus,Aquareovirus G
seg.
EF589108

reovirus

11

Amphotropic murine
NC_001702
vertebrates
1
Retroviridae,Gammaretrovirus,Murine
—
AF411814

leukemia virus
,NC_00181

leukemia virus

9,NC_0013

62,NC_001

501

Anatid herpesvirus 1
NC_013036
vertebrates
6
Herpesviridae,Mardivirus,Anatid herpesvirus 1
—
JQ673560,KF487736,

JF999965,KF263690,

EU082088,JQ647509

Andrias davidianus
NC_005946
vertebrates
1
Incloviridae,Ranavirus,Frog virus 3
—
KC865735

ranavirus

Anguilla anguilla circovirus
NC_023421
vertebrates
1
Circoviridae,Circovirus,Anguilla anguilla
—
KC469701

circovirus

Anguillid herpesvirus 1
NC_013668
vertebrates
1
Alloherpesviridae,Cyprinivirus,Anguillid
—
FJ940765

herpesvirus 1

Aotine herpesvirus 1
NC_016447
vertebrates
1
Herpesviridae,Cytomegalovirus,Aotine
—
FJ483970

herpesvirus 1

Aquareovirus A
NC_007582
vertebrates
1
Reoviridae,Aquareovirus,Aquareovirus A
seg. 1
AF418294

Aquareovirus A
NC_007583
vertebrates
1
Reoviridae,Aquareovirus,Aquareovirus A
seg. 2
AF418295

Aquareovirus A
NC_007584
vertebrates
1
Reoviridae,Aquareovirus,Aquareovirus A
seg. 3
AF418296

Aquareovirus A
NC_007585
vertebrates
1
Reoviridae,Aquareovirus,Aquareovirus A
seg. 4
AF418297

Aquareovirus A
NC_007588
vertebrates
1
Reoviridae,Aquareovirus,Aquareovirus A
seg. 8
AF418301

Aquareovirus A
NC_007589
vertebrates
1
Reoviridae,Aquareovirus,Aquareovirus A
seg. 9
AF418302

Aquareovirus A
NC_007590
vertebrates
1
Reoviridae,Aquareovirus,Aquareovirus A
seg.
AF418303

10

Aquareovirus A
NC_007591
vertebrates
1
Reoviridae,Aquareovirus,Aquareovirus A
seg.
AF418304

11

Aquareovirus A
NC_007592
vertebrates
1
Reoviridae,Aquareovirus,Aquareovirus A
seg. 6
AF418299

Aquareovirus C
NC_005166
vertebrates
1
Reoviridae,Aquareovirus,Aquareovirus C
seg. 1
AF403398

Aquareovirus C
NC_005167
vertebrates
1
Reoviridae,Aquareovirus,Aquareovirus C
seg. 2
AF403399

Aquareovirus C
NC_005168
vertebrates
1
Reoviridae,Aquareovirus,Aquareovirus C
seg. 3
AF403400

Aquareovirus C
NC_005169
vertebrates
1
Reoviridae,Aquareovirus,Aquareovirus C
seg. 4
AF403401

Aquareovirus C
NC_005170
vertebrates
1
Reoviridae,Aquareovirus,Aquareovirus C
seg. 5
AF403402

Aquareovirus C
NC_005171
vertebrates
1
Reoviridae,Aquareovirus,Aquareovirus C
seg. 6
AF403403

Aquareovirus C
NC_005172
vertebrates
1
Reoviridae,Aquareovirus,Aquareovirus C
seg. 7
AF403404

Aquareovirus C
NC_005173
vertebrates
1
Reoviridae,Aquareovirus,Aquareovirus C
seg. 8
AF403405

Aquareovirus C
NC_005174
vertebrates
1
Reoviridae,Aquareovirus,Aquareovirus C
seg. 9
AF403406

Aquareovirus C
NC_005175
vertebrates
1
Reoviridae,Aquareovirus,Aquareovirus C
seg.
AF403407

10

Aquareovirus C
NC_005176
vertebrates
1
Reoviridae,Aquareovirus,Aquareovirus C
seg.
AF403408

11

Arctic ground squirrel
NC_001484
vertebrates
1
Hepadnaviridae,Orthohepadnavirus,Ground
—
U29144

hepatitis B virus

squirrel hepatitis virus

Artibeus jamaicensis
NC_016752
vertebrates
1
Parvoviridae, Artibeus jamaicensis parvovirus
—
JQ037754

parvovirus 1

1

Astrovirus MLB1
NC_011400
vertebrates
5
Astroviridae,Astrovirus MLB1
—
JQ086552,AB823732,

AB823731,FJ402983,

FJ222451

Astrovirus MLB1 HK05
NC_011400
vertebrates
1
Astroviridae,Astrovirus MLB1
—
HM450380

Astrovirus MLB2
NC_016155
vertebrates
2
Astroviridae,Astrovirus MLB2
—
JF742759,AB829252

Astrovirus MLB3
NC_019028
vertebrates
1
Astroviridae,Astrovirus MLB3
—
JX857870

Astrovirus VA1
NC_013060
vertebrates
1
Astroviridae,Astrovirus VA1
—
FJ973620

Astrovirus VA2
NC_018669
vertebrates
1
Astroviridae,Astrovirus VA2
—
GQ5021 93

Astrovirus VA3
NC_019026
vertebrates
1
Astroviridae,Astrovirus VA3
—
JX857868

Astrovirus VA4
NC_019027
vertebrates
1
Astroviridae,Astrovirus VA4
—
JX857869

Astrovirus wild
NC_016896
vertebrates
1
Astroviridae,Mamastrovirus,Astrovirus wild
—
JQ340310

boar/W BAstV-1/

boar/W BAstV-1/2011/HU N

2011/HUN

Ateles paniscus
NC_019853
vertebrates
1
Polyomaviridae,Polyomavirus,Ateles paniscus
—
JX159987

polyomavirus 1

polyomavirus 1

Ateline herpesvirus 3
NC_001987
vertebrates
1
Herpesviridae,Rhadinovirus,Ateline
—
AF083424

herpesvirus 3

Atlantic salmon reovirus TS
NC_007583
vertebrates
1
Reoviridae,Aquareovirus,Aquareovirus A
seg. 2
EF434978

Atlantic salmon reovirus TS
NC_007590
vertebrates
1
Reoviridae,Aquareovirus,Aquareovirus A
seg.
EF434979

10

Atlantic salmon swim
NC_007654
vertebrates
1
Retroviridae,Atlantic salmon swim bladder
—
DQ174103

bladder sarcoma virus

sarcoma virus

Avian adeno-associated
NC_006263
vertebrates
1
Parvoviridae,Dependovirus,Avian adeno-
—
GQ368252

virus

associated virus

Avian adeno-associated
NC_004828
vertebrates
2
Parvoviridae,Dependovirus,Avian adeno-
—
AY186198,AY629582

virus ATCC VR-865

associated virus ATCC VR-865

Avian adeno-associated
NC_006263
vertebrates
1
Parvoviridae,Dependovirus,Avian adeno-
—
AY629583

virus strain DA-1

associated virus

Avian carcinoma virus
NC_001402
vertebrates
1
Retroviridae,Alpharetrovirus,Avian carcinoma
—
M14008

virus

Avian encephalomyelitis
NC_003990
vertebrates
3
Picornaviridae,Tremovirus,Avian
—
AJ225173,AY275539,

virus

encephalomyelitis virus

AY517471

Avian endogenous
NC_005947
vertebrates
7
Retroviridae, Avian endogenous retrovirus
—
AJ623291,AJ238124,

retrovirus EAV-HP

EAV-HP

AJ238125,AJ623292,

AJ623289,AJ292966,

AJ623290

Avian gyrovirus 2
NC_015396
vertebrates
2
Circoviridae,Gyrovirus,Avian gyrovirus 2
—
HM590588,JQ690763

Avian infectious bronchitis
NC_010800
vertebrates
1
Coronaviridae,Gammacoronavirus,Avian
—
AJ311317

virus (strain Beaudette CK)
,NC_00145

coronavirus

1

Avian infectious bronchitis
NC_010800
vertebrates
1
Coronaviridae,Gammacoronavirus,Avian
—
AY646283

virus
,NC_00145

coronavirus

partridge/GD/S14/2003
1

Avian leukemia virus
NC_015116
vertebrates
1
Retroviridae,Alpharetrovirus,Avian leukosis
—
HQ425636

,NC_00140

virus

8

Avian leukosis virus
NC_015116
vertebrates
59
Retroviridae,Alpharetrovirus,Avian leukosis
—
KF562374,JF932001,

,NC_00140

virus

JF932004,HQ148555,

8

AY013303,AB669569

JF931999,HM58265

7,AB669897,AB6694

33,AB670314,AB764

104,AB303223,EU07

0900,JF826241,JX25

4901,JF932002,HM4

52340,HM235667,KF

738251,KF562373,H

M235669,EU070902,

JF932003,DQ365814,

JN389518,AB764106,

FJ216405,AB669896,

HM452342,HM23566

8,HM452339,JN6248

80,JF932000,AB7641

07,GU982310,JN389

517,HQ148554,HM45

2341,GU982308,EU0

70901,AB682778,HQ

900844,EF467236,JN

624879,HM235670,K

F562375,HM582658,

JF951728,AB112960,

JX855935,AY013304,

JX453210,AB670312,

DQ115805,HM23566

5,HM776937,JN6248

78,AB669568

Avian leukosis virus
NC_015116
vertebrates
1
Retroviridae,Alpharetrovirus,Avian leukosis
—
Z46390

HPRS103
,NC_00140

virus

8

Avian leukosis virus LR-9
NC_015116
vertebrates
1
Retroviridae,Alpharetrovirus,Avian leukosis
—
AY350569

,NC_00140

virus

8

Avian myelocytomatosis
NC_001866
vertebrates
2
Retroviridae,Alpharetrovirus,Avian
—
M11784,AF033809

virus

myelocytomatosis virus

Avian orthoreovirus
NC_015126
vertebrates
8
Reoviridae,Orthoreovirus,Avian orthoreovirus
seg.
FR694191,DQ238093

L1
,DQ238094,EU61673

9,EU616735,HM2229

78,AY547458,KC183

748

Avian orthoreovirus
NC_015127
vertebrates
2
Reoviridae,Orthoreovirus,Avian orthoreovirus
seg.
HM222980,FR694192

L2

Avian orthoreovirus
NC_015128
vertebrates
14
Reoviridae,Orthoreovirus,Avian orthoreovirus
seg.
AY652695,AY652698

L3
,AY652700,DQ30017

5,AY652694,EU6167

38,FR694193,HM222

979,AY652699,AY65

2697,AY652696,AY6

52701,EU616737,AY

652693

Avian orthoreovirus
NC_015129
vertebrates
19
Reoviridae,Orthoreovirus,Avian orthoreovirus
seg.
AY639620,AY639614

M
,AY557188,EU61673

6,AY639612,AY5571

89,AY639619,AY639

617,AY639621,AY63

9613,AY639616,FR6

94194,AY639611,AY

639618,AY639615,E

U616740,HM222977,

DQ300176,AY639610

Avian orthoreovirus
NC_015130
vertebrates
19
Reoviridae,Orthoreovirus,Avian orthoreovirus
seg.
AY635940,AY635938

M
2,EU616741,HM22297

6,AY635936,DQ3001

77,AY635943,AY635

935,AY635945,AY63

5944,EU616742,AY6

35941,AY635934,AY

635939,AY750053,A

Y635937,AY635942,F

R694195,AY750052

Avian orthoreovirus
NC_015131
vertebrates
21
Reoviridae,Orthoreovirus,Avian orthoreovirus
seg.
AY573911,FR694196

M3
,AY573912,AY57391

3,AY573908,AY5739

07,AY557191,AY573

909,EU616744,AY57

3905,AY573910,KC8

65791,AY573914,AY

608700,AY557190,A

Y573904,AY573915,

EU616743,HM22297

5,AY303993,AY5739

06

Avian orthoreovirus
NC_015132
vertebrates
15
Reoviridae,Orthoreovirus,Avian orthoreovirus
seg.
AF004857,JN559377,

S1
L39002, HM222974,D

0525419,JN559375,F

R694197,DQ643974,

DQ868790, DQ86879

1,DQ643975,EF0573

97,DQ868789,EF057

398,EU526387

Avian orthoreovirus
NC_015133
vertebrates
6
Reoviridae,Orthoreovirus,Avian orthoreovirus
seg.
AF059717,FR694198,

S2
AF104311,JN559376,

AF059716,HM222973

Avian orthoreovirus
NC_015134
vertebrates
12
Reoviridae,Orthoreovirus,Avian orthoreovirus
seg.
EF030496,JQ924284,

S3
AF059720,EF030498,

AF059721,EF030497,

HM222972,AF004856

,EF030499,JQ916907

,DQ415659,FR69419

9

Avian orthoreovirus
NC_015135
vertebrates
6
Reoviridae,Orthoreovirus,Avian orthoreovirus
seg.
HM222971,AF059725

S4
,EF122838,JN559378

,AF059724,FR694200

Avian orthoreovirus strain
NC_015126
vertebrates
1
Reoviridae,Orthoreovirus,Avian orthoreovirus
seg.
AY641740

1017-1

L1

Avian orthoreovirus strain
NC_015126
vertebrates
1
Reoviridae,Orthoreovirus,Avian orthoreovirus
seg.
AY641742

2408

L1

Avian orthoreovirus strain
NC_015126
vertebrates
1
Reoviridae,Orthoreovirus,Avian orthoreovirus
seg.
AY641736

601G

L1

Avian orthoreovirus strain
NC_015126
vertebrates
1
Reoviridae,Orthoreovirus,Avian orthoreovirus
seg.
AY641737

916

L1

Avian orthoreovirus strain
NC_015126
vertebrates
1
Reoviridae,Orthoreovirus,Avian orthoreovirus
seg.
AY641738

918

L1

Avian orthoreovirus strain
NC_015126
vertebrates
1
Reoviridae,Orthoreovirus,Avian orthoreovirus
seg.
AY641739

919

L1

Avian orthoreovirus strain
NC_015126
vertebrates
1
Reoviridae,Orthoreovirus,Avian orthoreovirus
seg.
AY641743

OS161

L1

Avian orthoreovirus strain
NC_015126
vertebrates
1
Reoviridae,Orthoreovirus,Avian orthoreovirus
seg.
AY641744

R2/TW

L1

Avian reovirus strain 1733
NC_015126
vertebrates
1
Reoviridae,Orthoreovirus,Avian orthoreovirus
seg.
AY641741

L1

Avian reovirus strain 1733
NC_015128
vertebrates
1
Reoviridae,Orthoreovirus,Avian orthoreovirus
seg.
AF384171

L3

Avian reovirus strain S1133
NC_015126
vertebrates
1
Reoviridae,Orthoreovirus,Avian orthoreovirus
seg.
AY641735

L1

Avian reovirus strain S1133
NC_015132
vertebrates
1
Reoviridae,Orthoreovirus,Avian orthoreovirus
seg.
AF330703

S1

Avian sapelovirus
NC_006553
vertebrates
1
Picornaviridae,Sapelovirus,Avian sapelovirus
—
AY563023

Avirulent turkey
NC_001958
vertebrates
1
Adenoviridae,Siadenovirus,Turkey adenovirus
—
AY849321

hemorrhagic enteritis virus

A

Baboon enterovirus
NC_010415
vertebrates
1
Picornaviridae,Enterovirus,Enterovirus J
—
AF326766

Baboon orthoreovirus
NC_015877
vertebrates
1
Reoviridae,Orthoreovirus,Baboon
seg.
HQ847903

orthoreovirus
L1

Baboon orthoreovirus
NC_015878
vertebrates
1
Reoviridae,Orthoreovirus,Baboon
seg.
HQ847904

orthoreovirus

L2

Baboon orthoreovirus
NC_015879
vertebrates
1
Reoviridae,Orthoreovirus,Baboon
seg.
HQ847905

orthoreovirus
L3

Baboon orthoreovirus
NC_015880
vertebrates
1
Reoviridae,Orthoreovirus,Baboon
seg.
HQ847906

orthoreovirus
M1

Baboon orthoreovirus
NC_015881
vertebrates
1
Reoviridae,Orthoreovirus,Baboon
seg.
HQ847907

orthoreovirus
M2

Baboon orthoreovirus
NC_015882
vertebrates
1
Reoviridae,Orthoreovirus,Baboon
seg.
HQ847908

orthoreovirus
M3

Baboon orthoreovirus
NC_015883
vertebrates
1
Reoviridae,Orthoreovirus,Baboon
seg.
AF059719

orthoreovirus
S1

Baboon orthoreovirus
NC_015884
vertebrates
1
Reoviridae,Orthoreovirus,Baboon
seg.
AF059723

orthoreovirus
S2

Baboon orthoreovirus
NC_015885
vertebrates
1
Reoviridae,Orthoreovirus,Baboon
seg.
AF406787

orthoreovirus
S4

Baboon orthoreovirus
NC_015886
vertebrates
1
Reoviridae,Orthoreovirus,Baboon
seg.
AF059727

orthoreovirus
S3

Bandicoot papillomatosis
NC_010107
vertebrates
1
Papillomaviridae,Bandicoot papillomatosis
—
EU069819

carcinomatosis virus type 1

carcinomatosis virus type 1

Bandicoot papillomatosis
NC_010817
vertebrates
1
Papillomaviridae,Bandicoot papillomatosis
—
EU277647

carcinomatosis virus type 2

carcinomatosis virus type 2

Barbel circovirus
NC_015399
vertebrates
2
Circoviridae,Circovirus,Barbel circovirus
—
JF279961,GU799606

Barfin flounder nervous
NC_013458
vertebrates
1
Nodaviridae,Betanodavirus,Barfin flounder
seg.
EU236146

necrosis virus

nervous necrosis virus
RNA 1

Barfin flounder nervous
NC_013459
vertebrates
1
Nodaviridae,Betanodavirus,Barfin flounder
seg.
EU236147

necrosis virus

nervous necrosis virus
RNA 2

Barfin flounder virus
NC_011063
vertebrates
1
Nodaviridae,Betanodavirus,Barfin flounder
seg.
EU826137

BF93Hok

virus BF93Hok
RNA 1

Barfin flounder virus
NC_011064
vertebrates
1
Nodaviridae,Betanodavirus,Barfin flounder
seg.
EU826138

BF93Hok

virus BF93Hok
RNA 2

Bat adeno-associated virus
NC_014468
vertebrates
1
Parvoviridae,Dependovirus,Bat adeno-
—
GU226971

YNM

associated virus YNM

Bat adenovirus 2
NC_015932
vertebrates
1
Adenoviridae,Mastadenovirus,Bat adenovirus
—
JN252129

B

Bat adenovirus TJM
NC_016895
vertebrates
1
Adenoviridae,Mastadenovirus,Bat adenovirus
—
GU226970

A

Bat circovirus
NC_021206
vertebrates
2
Circoviridae,Circovirus,Bat circovirus
—
KC339249,JX863737

Bat coronavirus
NC_008315
vertebrates
1
Coronaviridae,Betacoronavirus,Bat
—
DQ648794

(BtCoV/133/2005)

coronavirus (BtCoV/133/2005)

Bat coronavirus 1A
NC_010437
vertebrates
1
Coronaviridae,Alphacoronavirus,Bat
—
EU420138

coronavirus 1A

Bat coronavirus 1B
NC_010436
vertebrates
1
Coronaviridae,Alphacoronavirus,Bat
—
EU420137

coronavirus 1B

Bat coronavirus BM48-
NC_014470
vertebrates
1
Coronaviridae,Bat coronavirus BM48-
—
GU190215

31/BG R/2008

31/BG R/2008

Bat coronavirus
NC_022103
vertebrates
1
Coronaviridae,Alphacoronavirus,Bat
—
KF430219

CDPHE15/USA/2006

coronavirus CDPHE15/USA/2006

Bat coronavirus HKU4-2
NC_009019
vertebrates
1
Coronaviridae,Betacoronavirus,Tylonycteris
—
EF065506

bat coronavirus HKU4

Bat coronavirus HKU4-3
NC_009019
vertebrates
1
Coronaviridae,Betacoronavirus,Tylonycteris
—
EF065507

bat coronavirus HKU4

Bat coronavirus HKU4-4
NC_009019
vertebrates
1
Coronaviridae,Betacoronavirus,Tylonycteris
—
EF065508

bat coronavirus HKU4

Bat coronavirus HKU5-2
NC_009020
vertebrates
1
Coronaviridae,Betacoronavirus,Pipistrellus bat
—
EF065510

coronavirus HKU5

Bat coronavirus HKU5-3
NC_009020
vertebrates
1
Coronaviridae,Betacoronavirus,Pipistrellus bat
—
EF065511

coronavirus HKU5

Bat coronavirus HKU5-5
NC_009020
vertebrates
1
Coronaviridae,Betacoronavirus,Pipistrellus bat
—
EF065512

coronavirus HKU5

Bat coronavirus HKU9-10-1
NC_009021
vertebrates
1
Coronaviridae,Betacoronavirus,Rousettus bat
—
HM211100

coronavirus HKU9

Bat coronavirus HKU9-10-2
NC_009021
vertebrates
1
Coronaviridae,Betacoronavirus,Rousettus bat
—
HM211101

coronavirus HKU9

Bat coronavirus HKU9-2
NC_009021
vertebrates
1
Coronaviridae,Betacoronavirus,Rousettus bat
—
EF065514

coronavirus HKU9

Bat coronavirus HKU9-3
NC_009021
vertebrates
1
Coronaviridae,Betacoronavirus,Rousettus bat
—
EF065515

coronavirus HKU9

Bat coronavirus HKU9-4
NC_009021
vertebrates
1
Coronaviridae,Betacoronavirus,Rousettus bat
—
EF065516

coronavirus HKU9

Bat coronavirus HKU9-5-1
NC_009021
vertebrates
1
Coronaviridae,Betacoronavirus,Rousettus bat
—
HM211098

coronavirus HKU9

Bat coronavirus HKU9-5-2
NC_009021
vertebrates
1
Coronaviridae,Betacoronavirus,Rousettus bat
—
HM211099

coronavirus HKU9

Bat hepatitis virus
NC_020881
vertebrates
3
Hepadnaviridae,Bat hepatitis virus
—
JX941466,JX941467,

JX941468

Bat picornavirus 1
NC_015940
vertebrates
2
Picornaviridae,Bat picornavirus 1
—
HQ595341,HQ59534

0

Bat picornavirus 2
NC_015941
vertebrates
2
Picornaviridae,Bat picornavirus 2
—
HQ595342,HQ59534

3

Bat picornavirus 3
NC_015934
vertebrates
2
Picornaviridae,Bat picornavirus 3
—
HQ595345,HQ59534

4

Beak and feather disease
NC_001944
vertebrates
205
Circoviridae,Circovirus,Beak and feather
—
JQ782201,GU936294

virus

disease virus

,JX221005,JX221002,

GU936287,JQ782197

,GQ396655,JX22100

3,AY521238,KF18869

4,AF311297,JXQ4920

6,JX221025,GQ1657

56,GU015021,JX221

014,AY450436,GUO1

5014,HM748920,JX2

21001,HM748922,GU

936289,AY521236,JX

049195,GU936291,G

U015015,JF519618,J

X221031,JX221030,A

B277750,GQ396653,

GU936290,HM74892

7,HM748935,AF3112

99,JX221007,GU015

023,KC980909,AB27

7747,JX221011,HM7

48924,GQ120621,JX

221006,JXQ49198,AY

450441,JX221004,G

0396652,AB277746,J

X221040,HM748925,

KF188684,KF467254,

JXQ49197,DQ397818

,JXQ49199,AB277751

,JX221016,JQ782199

,GU047347,KC69365

1,KF188685,FJ68598

0,GU015012,AF0718

78,AF311296,JX2210

12,GQ386944,KF188

687,JQ782196,EF457

975,GU015018,JX22

1032,GU015016,JX2

21021,JXQ49216,AY4

50438,AY450440,AF3

11302,JXQ49219,JX2

21008,GU015019,GU

936295,HM748932,E

U810208,FJ685989,A

F311301,JXQ49200,K

F188683,JXQ49218,J

XQ49209,GU015022,

KF188689,JX221024,

JXQ49217,JX221010,

JXQ49220,HM748919

,JX221037,KF188681

,JQ782200,HM74893

4,HM748928,JXQ492

04,KF188690,JXQ492

05,JXQ49208,JX2210

36,JF519619,AB5145

68,GQ165757,FJ685

979,JX221038,HM74

8931,JQ782208,AY45

0442,JXQ49214,JX22

1035,JX221039,JQ78

2204,KF188693,JX22

1018,JX221043,JXQ4

9203,AY450434,AY4

50439,KF188686,GQ

165758,KF188682,G

0396656,JX221022,J

X221013,JQ782206,

HM748929,AY521237

,GU936292,KF67333

5,JX221019,GU9362

96,KF673337,KF4672

52,AY450435,AB277

748,FJ685985,JX221

026,JX221034,HM74

8938,JX221041,HM7

48933,EF457974,AY4

50443,JXQ49211,HM

748930,JX221042,JX

221027,JXQ49207,AF

311300,HM748926,K

F673336,GU015013,J

X221020,JXQ49213,A

F311298,JXQ49202,J

X221023,GU936293,

JQ782198,JXQ49196,

GQ329705,JX221017

,HM748937,KF56125

0,HM748921,JX2210

29,JX221033,GU015

017,KF850537,HM74

8936,HM748918,JQ7

82205,EU810207,JXQ

49215,GU936288,AF

080560,GQ396654,J

XQ49210,AB277749,

KF188688,JXQ49201,

GU015020,HM74892

3,KC510146,KF1886

92,JXQ49212,AF3112

95,GU936297,HM748

939,KF467251,JXQ49

221,KF188691,JX221

009,JX221028,AY450

437,FJ685978,KF467

253,JX221015

Beluga Whale coronavirus
NC_010646
vertebrates
1
Coronaviridae,Gammacoronavirus,Beluga
—
EU111742

SW1

Whale coronavirus SW1

Betacoronavirus England 1
NC_019843
vertebrates
1
Coronaviridae,Betacoronavirus,Middle East
—
KC164505

respiratory syndrome coronavirus

Betacoronavirus
NC_022643
vertebrates
2
Coronaviridae,Betacoronavirus,Betacoronavir
—
KC545383,KC545386

Erinaceus/VMC/DEU/2012

us Erinaceus/VMC/D EU/2012

Bettongia penicillata
NC_014143
vertebrates
1
Papillomaviridae,Bettongia penicillata
—
GU220391

papillomavirus 1

papillomavirus 1

Blotched snakehead virus
NC_005982
vertebrates
1
Birnaviridae,Blosnavirus,Blotched snakehead
seg. A
AJ459382

virus

Blotched snakehead virus
NC_005983
vertebrates
1
Birnaviridae,Blosnavirus,Blotched snakehead
seg. B
AJ459383

virus

Bluegill picornavirus
NC_018506
vertebrates
1
Bluegill picornavirus
—
JX134222

Bocavirus
NC_014358
vertebrates
1
Parvoviridae,Bocavirus,Bocavirus
—
HM145750

gorilla/GBoV1/2009

gorilla/GBoV1/2009

Border disease virus
NC_003679
vertebrates
5
Flaviviridae,Pestivirus,Border disease virus
—
KC963426,KF925348

,AF037405,GU27087

7,GQ902940

Border disease virus-
NC_003679
vertebrates
1
Flaviviridae,Pestivirus,Border disease virus
—
U70263

BD31

Bos grunniens
NC_001522
vertebrates
6
Papillomaviridae,Deltapapillomavirus,Deltapap
—
JX174438,JX174439,

papillomavirus type 1

illomavirus 4

JX174441,JX174442,

JX174437,JX174440

Bottlenose dolphin
NC_010646
vertebrates
3
Coronaviridae,Gammacoronavirus,Beluga
—
KF793824,KF793825,

coronavirus HKU22

Whale coronavirus SW1

KF793826

Bovine adeno-associated
NC_005889
vertebrates
1
Parvoviridae,Dependovirus,Bovine adeno-
—
AY388617

virus

associated virus

Bovine adenovirus 3
NC_001876
vertebrates
1
Adenoviridae,Mastadenovirus, Bovine
—
JN381195

adenovirus B

Bovine adenovirus 6
NC_020074
vertebrates
1
Adenoviridae,Atadenovirus,Bovine adenovirus
—
JQ345700

E

Bovine adenovirus B
NC_001876
vertebrates
1
Adenoviridae, Mastadenovirus, Bovine
—
AF030154

adenovirus B

Bovine adenovirus D
NC_002685
vertebrates
1
Adenoviridae,Atadenovirus,Bovine adenovirus
—
AF036092

D

Bovine calicivirus
NC_002551
vertebrates
1
Caliciviridae,Vesivirus,Vesicular exanthema of
—
AJQ11099

swine virus

Bovine circovirus
NC_005148
vertebrates
1
Circoviridae,Circovirus,Porcine circovirus 2
—
AF109397

Bovine coronavirus
NC_010327
vertebrates
4
Coronaviridae,Betacoronavirus,Betacoronavir
—
AF391542,AF220295,

,NC_00773

U00735,AB354579

2,NC_0051

47,NC_003

045

Bovine coronavirus DB2
NC_010327
vertebrates
1
Coronaviridae,Betacoronavirus,
—
DQ811784

,NC_00773

Betacoronavirus 1

2,NC_0051

47,NC_003

045

Bovine coronavirus E-
NC_010327
vertebrates
1
Coronaviridae,Betacoronavirus,
—
EF424619

AH187
,NC_00773

Betacoronavirus 1

2,NC_0051

47,NC_003

045

Bovine coronavirus E-
NC_010327
vertebrates
1
Coronaviridae,Betacoronavirus,
—
FJ938064

AH187-TC
,NC_00773

Betacoronavirus 1

2,NC_0051

47,NC_003

045

Bovine coronavirus E-AH65
NC_010327
vertebrates
1
Coronaviridae,Betacoronavirus,
—
EF424615

,NC_00773

Betacoronavirus 1

2,NC_0051

47,NC_003

045

Bovine coronavirus E-
NC_010327
vertebrates
1
Coronaviridae,Betacoronavirus,
—
EF424616

AH65-TC
,NC_00773

Betacoronavirus 1

2,NC_0051

47,NC_003

045

Bovine coronavirus E-DB2-
NC_010327
vertebrates
1
Coronaviridae,Betacoronavirus,
—
FJ938063

TC
,NC_00773

Betacoronavirus 1

2,NC_0051

47,NC_003

045

Bovine coronavirus R-
NC_010327
vertebrates
1
Coronaviridae,Betacoronavirus,
—
EF424620

AH187
,NC_00773

Betacoronavirus 1

2,NC_0051

47,NC_003

045

Bovine coronavirus R-
NC_010327
vertebrates
1
Coronaviridae,Betacoronavirus,
—
EF424617

AH65
,NC_00773

Betacoronavirus 1

2,NC_0051

47,NC_003

045

Bovine coronavirus R-
NC_010327
vertebrates
1
Coronaviridae,Betacoronavirus,
—
EF424618

AH65-TC
,NC_00773

Betacoronavirus 1

2,NC_0051

47,NC_003

045

Bovine coronavirus isolate
NC_010327
vertebrates
1
Coronaviridae,Betacoronavirus,
—
DQ915164

Alpaca
,NC_00773

Betacoronavirus 1

2,NC_0051

47,NC_003

045

Bovine enterovirus
NC_001859
vertebrates
4
Picornaviridae,Enterovirus,Enterovirus E
—
DQ092769,DQ09277

1,DQ092792,DQ0927

93

Bovine enterovirus strain
NC_001859
vertebrates
1
Picornaviridae,Enterovirus,Enterovirus E
—
AF123432

K2577

Bovine enterovirus strain
NC_001859
vertebrates
1
Picornaviridae,Enterovirus,Enterovirus E
—
AF123433

SL305

Bovine enterovirus type 2
NC_021220
vertebrates
4
Picornaviridae,Enterovirus,Enterovirus F
—
HQ663846,AY508696

,HQ917060,AY50869

7

Bovine foamy virus
NC_001831
vertebrates
4
Retroviridae,Spumavirus,Bovine foamy virus
—
U94514,JX307861,A

Y134750,JX307862

Bovine herpesvirus 1
NC_001847
vertebrates
1
Herpesviridae,Varicellovirus,Bovine
—
AJQ04801

herpesvirus 1

Bovine herpesvirus 4
NC_002665
vertebrates
2
Herpesviridae,Rhadinovirus,Bovine
—
AF318573,JN133502

herpesvirus 4

Bovine herpesvirus 5
NC_005261
vertebrates
1
Herpesviridae,Varicellovirus,Bovine
—
AY261359

herpesvirus 5

Bovine herpesvirus type
NC_001847
vertebrates
1
Herpesviridae,Varicellovirus,Bovine
—
JX898220

1.1

herpesvirus 1

Bovine hungarovirus 1
NC_018668
vertebrates
1
Picornaviridae,Hunnivirus,Hunnivirus A
—
JQ941880

Bovine immunodeficiency
NC_001413
vertebrates
1
Retroviridae,Lentivirus,Bovine
—
M32690

virus

immunodeficiency virus

Bovine kobuvirus
NC_004421
vertebrates
1
Picornaviridae,Kobuvirus,Aichivirus B
—
AB084788

Bovine leukemia virus
NC_001414
vertebrates
9
Retroviridae,Deltaretrovirus,Bovine leukemia
—
AF033818,FJ914764,

virus

DQ0647,AF257515,H

E967301,K02120,HE

967303,EF600696,H

E967302

Bovine papillomavirus-1
NC_001522
vertebrates
1
Papillomaviridae,Deltapapillomavirus,Deltapap
—
XQ2346

illomavirus 4

Bovine papillomavirus-3
NC_004197
vertebrates
1
Papillomaviridae,Xipapillomavirus,Xipapilloma
—
AJ620207

virus 1

Bovine papillomavirus-4
NC_004197
vertebrates
1
Papillomaviridae,Xipapillomavirus,Xipapilloma
—
XQ5817

virus 1

Bovine papillomavirus-5
NC_004195
vertebrates
1
Papillomaviridae,Epsilonpapillomavirus,Epsilo
—
AJ620206

npapillomavirus 1

Bovine papillomavirus-6
NC_004197
vertebrates
1
Papillomaviridae,Xipapillomavirus,Xipapilloma
—
AJ620208

virus 1

Bovine papillomavirus 3
NC_004197
vertebrates
1
Papillomaviridae,Xipapillomavirus,
—
AF486184

Xipapillomavirus 1

Bovine papillomavirus 7
NC_007612
vertebrates
1
Papillomaviridae,Bovine papillomavirus 7
—
DQ217793

Bovine papillomavirus 8
NC_004195
vertebrates
1
Papillomaviridae,Epsilonpapillomavirus,Epsilo
—
DQ098913

npapillomavirus 1

Bovine papillomavirus
NC_004197
vertebrates
1
Papillomaviridae,Xipapillomavirus,
—
EU360723

BAA5-Japan

Xipapillomavirus 1

Bovine papillomavirus type
NC_001522
vertebrates
2
Papillomaviridae,Deltapapillomavirus,Deltapap
—
JX678969,AB626705

1

illomavirus 4

Bovine papillomavirus type
NC_004197
vertebrates
2
Papillomaviridae,Xipapillomavirus,
—
AB331651,KF017607

10

Xipapillomavirus 1

Bovine papillomavirus type
NC_004197
vertebrates
1
Papillomaviridae,Xipapillomavirus,
—
AB543507

11

Xipapillomavirus 1

Bovine papillomavirus type
NC_004197
vertebrates
2
Papillomaviridae,Xipapillomavirus,
—
JF834524,JF834523

12

Xipapillomapillomavirus type

Bovine papillomavirus type
NC_001522
vertebrates
1
Papillomaviridae,Deltapapillomavirus,Deltapap
—
JQ798171

13

illomavirus 4

Bovine papillomavirus type
NC_001522
vertebrates
2
Papillomaviridae,Deltapapillomavirus,Deltapap
—
M20219,KC878306

2

illomavirus 4

Bovine papillomavirus type
NC_004195
vertebrates
1
Papillomaviridae,Epsilonpapillomavirus,Epsilo
—
DQ098917

8-EB

npapillomavirus 1

Bovine papillomavirus type
NC_004197
vertebrates
1
Papillomaviridae,Xipapillomavirus,
—
AB331650

9

Xipapillomavirus 1

Bovine papular stomatitis
NC_005337
vertebrates
1
Poxviridae,Parapoxvirus,Bovine papular
—
AY386265

virus

stomatitis virus

Bovine parvovirus
NC_001540
vertebrates
1
Parvoviridae,Bocavirus,Bovine parvovirus
—
M14363

Bovine parvovirus-2
NC_006259
vertebrates
1
Parvoviridae,Dependovirus,Bovine parvovirus-2
—
AF406966

Bovine parvovirus-1
NC_001540
vertebrates
1
Parvoviridae,Bocavirus,Bovine parvovirus
—
DQ335247

Bovine polyomavirus
NC_001442
vertebrates
1
Polyomaviridae,Polyomavirus,Bovine
—
D13942

polyomavirus

Bovine respiratory
NC_012948
vertebrates
1
Coronaviridae, Bovine respiratory coronavirus
—
FJ938065

coronavirus AH187

AH187

Bovine respiratory
NC_012949
vertebrates
1
Coronaviridae, Bovine respiratory coronavirus
—
FJ938066

coronavirus bovine/US/OH-

bovine/US/OH-440-TC/1996

440-TC/1996

Bovine rhinitis B virus
NC_010354
vertebrates
1
Picornaviridae,Aphthovirus,Bovine rhinitis B
—
EU236594

virus

Bovine viral diarrhea virus
NC_001461
vertebrates
17
Flaviviridae,Pestivirus,Bovine viral diarrhea
—
JX419397,U86599,AJ

1

virus 1

133739,KC963967,A

F041040,KC757383,

M31182,AJ133738,E

F101530,KF772785,U

86600,AF268278,DQ

088995,JN400273,AF

220247,JX419398,JQ

799141

Bovine viral diarrhea virus
NC_001461
vertebrates
1
Flaviviridae,Pestivirus,Bovine viral diarrhea
—
AF526381

1 strain ZM-95

virus 1

Bovine viral diarrhea virus
NC_002032
vertebrates
8
Flaviviridae,Pestivirus,Bovine viral diarrhea
—
AB567658,AF002227,

2

virus 2

GQ888686,FJ527854

,AY149215,HQ25881

0,KC963968,AF1459

67

Bovine viral diarrhea virus
NC_002032
vertebrates
1
Flaviviridae,Pestivirus,Bovine viral diarrhea
—
AF502399

2-New York'93 virus 2

Bovine viral diarrhea virus
NC_012812
vertebrates
8
Flaviviridae,Pestivirus,Bovine viral diarrhea
—
JX469119,JX985409,

3

virus 3

JQ612704,AB871953,

KC297709,HQ231763

,JQ612705,KC78874

8

Bovine viral diarrhea virus
NC_012812
vertebrates
1
Flaviviridae,Pestivirus,Bovine viral diarrhea
—
FJQ40215

3 Th/04_KhonKaen

virus 3

Bovine viral diarrhea virus
NC_001461
vertebrates
1
Flaviviridae,Pestivirus,Bovine viral diarrhea
—
AJ585412

VEDEVAC

virus 1

Bovine viral diarrhea virus
NC_001461
vertebrates
1
Flaviviridae,Pestivirus,Bovine viral diarrhea
—
AF091605

strain Oregon C24V

virus 1

Bovine viral diarrhea virus
NC_001461
vertebrates
3
Flaviviridae,Pestivirus,Bovine viral diarrhea
—
HQ174293,HQ17429

type 1a

virus 1

2,JN380080

Bovine viral diarrhea virus
NC_001461
vertebrates
6
Flaviviridae,Pestivirus,Bovine viral diarrhea
—
HQ174296,JN644055

type 1b

virus 1

,JN380089,JN380088

,JN704144,HQ17429

4

Breda virus
NC_007447
vertebrates
1
Coronaviridae,Torovirus,Bovine torovirus
—
AY427798

Broome virus
NC_014236
vertebrates
1
Reoviridae,Orthoreovirus,Broome virus
seg.
GQ258977

L1

Broome virus
NC_014237
vertebrates
1
Reoviridae,Orthoreovirus,Broome virus
seg.
GQ258978

L2

Broome virus
NC_014238
vertebrates
1
Reoviridae,Orthoreovirus,Broome virus
seg.
GQ258979

L3

Broome virus
NC_014239
vertebrates
1
Reoviridae,Orthoreovirus,Broome virus
seg.
GQ258980

M1

Broome virus
NC_014240
vertebrates
1
Reoviridae,Orthoreovirus,Broome virus
seg.
GQ258981

M2

Broome virus
NC_014241
vertebrates
1
Reoviridae,Orthoreovirus,Broome virus
seg.
GQ258982

M3

Broome virus
NC_014242
vertebrates
1
Reoviridae,Orthoreovirus,Broome virus
seg.
GQ258983

S1

Broome virus
NC_014243
vertebrates
1
Reoviridae,Orthoreovirus,Broome virus
seg.
GQ258984

S2

Broome virus
NC_014244
vertebrates
1
Reoviridae,Orthoreovirus,Broome virus
seg.
GQ258985

S3

Broome virus
NC_014245
vertebrates
1
Reoviridae,Orthoreovirus,Broome virus
seg.
GQ258986

S4

Budgerigar fledgling
NC_004764
vertebrates
14
Polyom aviridae,Polyomavirus,Budgerigar
—
AB453165,AF118150,

disease polyomavirus

fledgling disease polyomavirus

AB453166,M20775,A

B453162,GU452537,

AB477106,AB453160

,AB453161,FJ385773

,AY672646,AB45315

9,AB453164,AB4531

63

Budgerigar fledgling
NC_004764
vertebrates
1
Polyom aviridae,Polyomavirus,Budgerigar
—
AF241168

disease virus-1

fledgling disease polyomavirus

Budgerigar fledgling
NC_004764
vertebrates
1
Polyom aviridae,Polyomavirus,Budgerigar
—
AF241169

disease virus-4

fledgling disease polyomavirus

Budgerigar fledgling
NC_004764
vertebrates
1
Polyom aviridae,Polyomavirus,Budgerigar
—
AF241170

disease virus-5

fledgling disease polyomavirus

Butcherbird polyomavirus
NC_023008
vertebrates
1
Polyomaviridae,Polyomavirus,Butcherbird
—
KF360862

polyomavirus

Calf-giraffe coronavirus
NC_010327,
vertebrates
1
Coronaviridae,Betacoronavirus,
—
EF424624

US/OH3/2006
NC_007732,

Betacoronavirus 1

NC_005147,

NC_003045

Calicivirus isolate Allston
NC_004542
vertebrates
1
Caliciviridae,Canine calicivirus
—
GQ475302

2008/US

Calicivirus isolate
NC_004542
vertebrates
1
Caliciviridae,Canine calicivirus
—
GQ475301

Allston 2009/US

Calicivirus isolate
NC_006875
vertebrates
1
Caliciviridae,Calicivirus isolate TCG
—
AB117797

TCG

Calicivirus pig/
NC_012699
vertebrates
1
Caliciviridae,St-Valerien swine virus
—
FJ355930

AB104/CAN

Calicivirus pig/
NC_012699
vertebrates
1
Caliciviridae,St-Valerien swine virus
—
FJ355928

AB90/CAN

Calicivirus pig/
NC_012699
vertebrates
1
Caliciviridae,St-Valerien swine virus
—
FJ355929

F15-10/CAN

Calicivirus pig/NC-
NC_012699
vertebrates
1
Caliciviridae,St-Valerien swine virus
—
GU592498

WGP93C/USA/2009

Calicivirus strain NB
NC_004064,
vertebrates
1
Caliciviridae,Nebovirus,Newbury-1 virus
—
AY082891

NC_007916

California sea lion
NC_013796
vertebrates
1
Polyomaviridae,Polyomavirus,California
—
GQ331138

polyomavirus 1

sea lion polyomavirus 1

Callitrichine
NC_004367
vertebrates
1
Herpes viridae,Lymphocryptovirus,
—
AF319782

herpesvirus 3

Callitrichine herpesvirus 3

Camelpox virus
NC_003391
vertebrates
1
Poxviridae,Orthopoxvirus,Camelpox virus
—
AF438165

Camelpox virus CMS
NC_003391
vertebrates
1
Poxviridae,Orthopoxvirus,Camelpox virus
—
AY009089

Camelus dromedarius
NC_015267
vertebrates
1
Papillomaviridae,Deltapapillomavirus,Camelus
—
HQ912790

papillomavirus type 1

dromedarius papillomavirus type 1

Camelus dromedarius
NC_015268
vertebrates
1
Papillomaviridae,Deltapapillomavirus,Camelus
—
HQ912791

papillomavirus type 2

dromedarius papillomavirus type 2

Canary circovirus
NC_003410
vertebrates
1
Circoviridae,Circovirus,Canary circovirus
—
AJ301633

Canary polyomavirus
NC_017085
vertebrates
1
Polyomaviridae,Polyomavirus,Canary polyomavirus
—
GU345044

Canarypox virus
NC_005309
vertebrates
1
Poxviridae,Avipoxvirus,Canarypox virus
—
AY318871

Canine adenovirus
NC_001734
vertebrates
1
Adenoviridae,Mast ad enovirus,Canine adenovirus A
—
Y07760

Canine adenovirus 1
NC_001734
vertebrates
1
Adenoviridae,Mast ad enovirus,Canine adenovirus A
—
U55001

Canine adenovirus 2
NC_001734
vertebrates
1
Adenoviridae,Mast ad enovirus,Canine adenovirus A
—
U77082

Canine bocavirus
NC_020499
vertebrates
5
Parvoviridae,Bocavirus,Canine bocavirus
—
JQ692588,JN648103,

JQ692591 ,JQ692590,

JQ692589

Canine calicivirus
NC_004542
vertebrates
1
Caliciviridae,Canine calicivirus
—
AB070225

Canine circovirus
NC_020904
vertebrates
3
Circoviridae,Circovirus,Canine circovirus
—
KC241982,KC241983,

KC241984

Canine coronavirus
NC_002306
vertebrates
4
Coronaviridae,Alphacoronavirus,Alphacoronavirus 1
—
GQ477367,JQ404409

JQ404410,JN856008

Canine kobuvirus 1
NC_001918
vertebrates
1
Picornaviridae, Kobuvirus,Aichivirus A

KC161964

Canine kobuvirus
NC_001918
vertebrates
1
Picornaviridae, Kobuvirus,Aichivirus A
—
JN088541

US- PC0082

Canine minute virus
NC_004442
vertebrates
6
Parvoviridae,Bocavirus,Canine minute virus
—
FJ214110,AB518884,

AF495467,AB518883,

FJ899734,AB158475

Canine oral
NC_001619
vertebrates
2
Papillomaviridae,Lambdapapillomavirus,
—
D55633,L22695

papillomavirus

Lamb dapapillomavirus 2

Canine papillomavirus 10
NC_016075
vertebrates
1
Papillomaviridae,Canine papillomavirus 10
—
JF800657

Canine papillomavirus 11
NC_008297
vertebrates
1
Papillomaviridae,Chipapillomavirus,Chipapillo
—
JF800658

mavirus 1

Canine papillomavirus 12
NC_016074
vertebrates
1
PapillomaviridaeCanine papillomavirus 9
—
JQ754321

Canine papillomavirus 14
NC_019852
vertebrates
1
PapillomaviridaeCanine papillomavirus 14
—
JQ701802

Canine papillomavirus 2
NC_006564
vertebrates
1
Papillomaviridae,Taupapillomavirus,Taupapillo
—
AY722648

mavirus 1

Canine papillomavirus 3
NC_008297
vertebrates
1
Papillomaviridae,Chipapillomavirus,Chipapillo
—
DQ295066

mavirus 1

Canine papillomavirus 4
NC_010226
vertebrates
1
Papillomaviridae,Chipapillomavirus,Chipapillo
—
EF584537

mavirus 2

Canine papillomavirus 5
NC_008297
vertebrates
1
Papillomaviridae,Chipapillomavirus,Chipapillo
—
FJ492743

mavirus 1

Canine papillomavirus 7
NC_006564
vertebrates
1
Papillomaviridae,Taupapillomavirus,Taupapillo
—
FJ492742

mavirus 1

Canine papillomavirus 8
NC_016014
vertebrates
1
Papillomaviridae,Canine papillomavirus 8
—
HQ262536

Canine papillomavirus 9
NC_016074
vertebrates
1
Papillomaviridae,Canine papillomavirus 9
—
JF800656

Canine parvovirus
NC_001539
vertebrates
4
Parvoviridae,Parvovirus,Feline panleukopenia
—
EU310373,M19296,J

virus

N033694,D26079

Canine parvovirus 2b
NC_001539
vertebrates
1
Parvoviridae,Parvovirus,Feline panleukopenia
—
JQ268284

virus

Canine picodicistrovirus
NC_021178
vertebrates
3
Picornaviridae,Dicipivirus,Cadicivirus A
—
JN819202,JN819203,

JN819204

Canine picornavirus
NC_016964
vertebrates
1
Canine picornavirus
—
JN831356

Capra hircus
NC_008032
vertebrates
1
Papillomaviridae,Phipapillomavirus,Phipapillo
—
DQ091200

papillomavirus type 1

mavirus 1

Capreolus capreolus
NC_011051
vertebrates
1
Papillomaviridae,Deltapapillomavirus,Deltapap
—
EF680235

papillomavirus 1

illomavirus 5

Caprine arthritis
NC_001463
vertebrates
6
Retroviridae,Lentivirus,Caprine arthritis
—
GQ381130,JF502416

encephalitis virus

encephalitis virus

,M33677,AF322109,G

U120138,AY900630

Caprine arthritis
NC_001463
vertebrates
1
Retroviridae,Lentivirus,Caprine arthritis
—
FJ195346

encephalitis virus 0v496

encephalitis virus

Caprine arthritis
NC_001463
vertebrates
1
Retroviridae,Lentivirus,Caprine arthritis
—
EU293537

encephalitis virus

encephalitis virus

Roccaverano

Caprine kobuvirus
NC_023422
vertebrates
1
Picornaviridae,Kobuvirus,Caprine kobuvirus
—
KF793927

Cardioderma polyomavirus
NC_020067
vertebrates
1
Polyomaviridae,Polyomavirus,Cardioderma
—
JX520659

polyomavirus

Cardiovirus BR/118/2006
NC_009448
vertebrates
1
Picornaviridae,Cardiovirus,Theilovirus
—
EU681177

,NC_00136

6,NC_0108

10

Cardiovirus D/VI2223/2004
NC_009448
vertebrates
1
Picornaviridae,Cardiovirus,Theilovirus
—
EU681179

,NC_00136

6,NC_0108

10

Cardiovirus D/VI2229/2004
NC_009448
vertebrates
1
Picornaviridae,Cardiovirus,Theilovirus
—
EU681176

,NC_00136

6,NC_0108

10

Cardiovirus D/VI2273/2004
NC_009448
vertebrates
1
Picornaviridae,Cardiovirus,Theilovirus
—
EU681178

,NC_00136

6,NC_0108

10

Caretta caretta
NC_011530
vertebrates
1
Papillomaviridae,Dyozetapapillomavirus,Dyoz
—
EU493092

papillomavirus 1

etapapillomavirus 1

Carp picornavirus 1
NC_023162
vertebrates
1
Carp picornavirus 1
—
KF306267

Cas-Br-E murine leukemia
NC_001702
vertebrates
1
Retroviridae,Gammaretrovirus,Murine
—
X57540

virus
,NC_00181

leukemia virus

9,NC_0013

62,NC_001

501

Castor canadensis
NC_023178
vertebrates
1
Papillomaviridae,Castor canadensis
—
KCO20689

papillomavirus type 1

papillomavirus type 1

Caviid herpesvirus 2
NC_020231
vertebrates
2
Herpesviridae,Caviid herpesvirus 2
—
AB592928,KC503762

Caviid herpesvirus 2 str,
NC_020231
vertebrates
1
Herpesviridae,Caviid herpesvirus 2
—
HG531783

CIDMTR

Cebus albifrons
NC_019854
vertebrates
1
Polyomaviridae,Polyomavirus,Cebus albifrons
—
JX159988

polyomavirus 1

polyomavirus 1

Cercopithecine herpesvirus
NC_006560
vertebrates
1
Herpesviridae,Simplexvirus,Cercopithecine
—
AY714813

2

herpesvirus 2

Cercopithecine herpesvirus
NC_012783
vertebrates
2
Herpesviridae,Cytomegalovirus,Cercopithecin
—
FJ483968,FJ483969

5

e herpesvirus 5

Cercopithecine herpesvirus
NC_002686
vertebrates
1
Herpesviridae,Varicellovirus,Cercopithecine
—
AF275348

9

herpesvirus 9

Chaerephon polyomavirus
NC_020065
vertebrates
1
Polyomaviridae,Polyomavirus,Chaerephon
—
JX520657

1

polyomavirus 1

Chelonia mydas
NC_011530
vertebrates
1
Papillomaviridae,Dyozetapapillomavirus,Dyoz
—
EU493091

papillomavirus 1

etapapillomavirus 1

Chicken anemia virus
NC_001427
vertebrates
52
Circoviridae,Gyrovirus,Chicken anemia virus
—
KF224936,DQ217400

,KF224938,DQ12493

6,KF224935,AF31190

0,JX964755,DQ1416

73,KC414026,KF224

929,AY999018,AY83

9944,KF224934,DQ2

17401,AJ297685,AB0

27470,KF224937,DQ

141670,DQ141672,K

F224926,AF311892,D

0141671,AF390102,

EF176599,KF224931,

U66304,AF390038,A

Y040632,JF507715,D

0124935,FJ172347,D

0991394,M55918,D1

0068,KF224933,DQ1

24934,A48606,AF285

882,AB119448,L1476

7,KF224932,KF22492

8,JQ690762,AF39511

4,JX260426,U65414,

AY843527,AJ297684,

AY846844,AF475908,

KF224930,KF224927

Chicken astrovirus
NC_003790
vertebrates
1
Astroviridae,Avastrovirus,Chicken astrovirus
—
AB033998

Chimpanzee polyomavirus
NC_014743
vertebrates
3
Polyomaviridae,Polyomavirus,Chimpanzee
—
FR692336,FR692334

polyomavirus

,FR692335

Cimodo virus
NC_023420
vertebrates
1
Reoviridae, Cimodo virus
seg. 1
KF880772

Circovirus
NC_002361
vertebrates
1
Circoviridae,Circovirus,Columbid circovirus
—
HQ738642

NGchicken38/NGA/2009

Citrus endogenous
NC_023153
vertebrates
3
Retroviridae,Citrus endogenous
—
KF800045,KF800044,

pararetrovirus

pararetrovirus

KF800043

Classical swine fever virus
NC_002657
vertebrates
59
Flaviviridae,Pestivirus,Classical swine fever
—
U45477,HQ148063,A

virus

47690,JQ268754,EU

915211,GQ902941,K

C851953,D49532,JX2

62391,AY775178,AY

578687,AF099102,E

U857642,AF333000,

GU324242,L49347,A

Y259122,AF352565,

GU233731,FJ529205,

A16790,AF091507,G

0923951,AY646427,

HQ380231,AX191158

,EU789580,AF09244

8,D49533,AY382481,

GU233733,EU497410

,U45478,A77196,AY5

78688,X96550,AY568

569,AY663656,AY36

7767,GU233732,GQ1

22383,HM237795,AF

091661,AY805221,U9

0951,GU592790,JX2

18094,HQ148062,FJ2

65020,DQ127910,CQ

867021,GU233734,A

F326963,AF531433,H

0148061,JQ595295,

AY072924,HM175885

,EU490425

Classical swine fever virus -
NC_002657
vertebrates
1
Flaviviridae,Pestivirus,Classical swine fever
—
X87939

Alf ort/187

virus

Classical swine fever virus -
NC_002657
vertebrates
1
Flaviviridae,Pestivirus,Classical swine fever
—
JQ4358

Alfort/Tuebingen

virus

Classical swine fever virus -
NC_002657
vertebrates
1
Flaviviridae,Pestivirus,Classical swine fever
—
M31768

Brescia

virus

Classical swine fever virus -
NC_002657
vertebrates
1
Flaviviridae,Pestivirus,Classical swine fever
—
Z46258

C

virus

Classical swine fever virus
NC_002657
vertebrates
1
Flaviviridae,Pestivirus,Classical swine fever
—
AF407339

39

virus

Classical swine fever virus
NC_002657
vertebrates
1
Flaviviridae,Pestivirus,Classical swine fever
—
AY554397

96TD

virus

Colobus guereza
NC_004104
vertebrates
1
Papillomaviridae,Alphapapillomavirus,Alphapa
—
GU014532

papillomavirus type 1

pillomavirus 14

Columbid circovirus
NC_002361
vertebrates
16
Circoviridae,Circovirus,Columbid circovirus
—
DQ915950,DQ91595

9,EU840176,DQ9159

57,DQ090944,DQ090

945,AF252610,DQ91

5958,AJ298230,JX90

1125,AJ298229,JN18

3455,DQ915961,DQ9

15962,DQ915956,DQ

915960

Common chimpanzee
NC_001355
vertebrates
1
Papillomaviridae,Alphapapillomavirus,Alphapa
—
AF020905

papillomavirus 1

pillomavirus 10

Common marmoset foamy
NC_001364
vertebrates
1
Retroviridae,Spumavirus,Simian foamy virus
—
GU356395

virus

Common midwife toad
NC_005946
vertebrates
1
Iridoviridae,Ranavirus,Frog virus 3
—
JQ231222

ranavirus

Common-moorhen
NC_016996
vertebrates
1
Coronaviridae,Deltacoronavirus,Common-
—
JQ065049

coronavirus HKU21

moorhen coronavirus H KU21

Cosavirus A
NC_012800
vertebrates
2
Picornaviridae,Cosavirus,Cosavirus A
—
FJ438902,GU968209

Cotia virus SPAn232
NC_016924
vertebrates
1
Poxviridae,Cotia virus
—
HQ6471 81

Cottontail rabbit
NC_001541
vertebrates
4
Papillomaviridae,Kappapapillomavirus,Kappap
—
AJ404003,JF303889,

papillomavirus

apillomavirus 2
—
AJ243287,K02708

Cowpox virus
NC_003663
vertebrates
34
Poxviridae,Orthopoxvirus,Cowpox virus
—
KC813499,HQ420896

,KC813496,KC81350

0,KC813492,DQ4375

93,HQ420895,HQ420

897,KC813505,X9435

5,HQ407377,KC8135

12,KC813501,KC813

493,KC813494,HQ42

0894,HQ420899,HQ4

20900,KC813510,KC

813491,KC813502,K

C813495,KC813509,

KC813511,AF482758

,KC813503,HQ42089

3,KC813507,HQ4208

98,KC813506,KC813

508,KC813504,KC81

3498,KC813497

Crocuta crocuta
NC_018575
vertebrates
1
Papillomaviridae,Lambdapapillomavirus,Crocu
—
HQ585856

papillomavirus 1

ta crocuta papillomavirus 1

Crow polyomavirus
NC_007922
vertebrates
1
Polyomaviridae,Polyomavirus,Crow
—
DQ192570

polyomavirus

Cyclovirus
NC_014930
vertebrates
1
Circoviridae,Cyclovirus
—
HQ738644

NGchicken15/NGA/2009

NGchicken15/NGA/2009

Cyclovirus
NC_014930
vertebrates
1
Circoviridae,Cyclovirus
—
HQ738643

NGchicken8/NGA/2009

NGchicken15/NGA/2009

Cyclovirus
NC_014927
vertebrates
1
Circoviridae,Cyclovirus PKgoat21/PAK/2009
—
HQ738634

PKbeef23/PAK/2009

Cyclovirus
NC_014928
vertebrates
1
Circoviridae,Cyclovirus PKgoat11/PAK/2009
—
HQ738636

PKgoat11/PAK/2009

Cyclovirus
NC_014927
vertebrates
1
Circoviridae,Cyclovirus PKgoat21/PAK/2009
—
HQ738635

PKgoat21/PAK/2009

Cyclovirus VN
NC_021707
vertebrates
8
Circoviridae,Cyclovirus VN
—
KF031491,KF031469,

KF031467,KF031471,

KF031466,KF031465,

KF031468,KF031470

Cyclovirus bat/USA/2009
NC_014929
vertebrates
1
Circoviridae,Cyclovirus bat/USA/2009
—
HQ738637

Cynomolgus macaque
NC_016154
vertebrates
1
Herpesviridae,Cytomegalovirus,Cynomolgus
—
JN227533

cytomegalovirus strain

macaque cytomegalovirus strain Ottawa

Ottawa

Cyprinid herpesvirus 1
NC_019491
vertebrates
1
Alloherpesviridae,Cyprinivirus,Cyprinid
—
JQ815363

herpesvirus 1

Cyprinid herpesvirus 2
NC_019495
vertebrates
1
Alloherpesviridae,Cyprinivirus,Cyprinid
—
JQ815364

herpesvirus 2

Cyprinid herpesvirus 3
NC_009127
vertebrates
3
Alloherpesviridae,Cyprinivirus,Cyprinid
—
DQ657948,AP008984

herpesvirus 3

,DQ177346

DG-75 Murine leukemia
NC_001702
vertebrates
1
Retroviridae,Gammaretrovirus,Murine
—
AF221065

virus
,NC_00181

leukemia virus

9,NC_0013

62,NC_001

501

Deer papillomavirus
NC_001523
vertebrates
1
Papillomaviridae,Deltapapillomavirus,Deltapap
—
M11910

illomavirus 2

Deerpox virus W-1170-84
NC_006967
vertebrates
1
Poxviridae,Cervidpoxvirus,Deerpox virus W-
—
AY689437

1170-84

Deerpox virus W-848-83
NC_006966
vertebrates
1
Poxviridae,Cervidpoxvirus,Deerpox virus W-
—
AY689436

848-83

Delphinus delphis
NC_011109
vertebrates
1
Papillomaviridae,Upsilonpapillomavirus,Upsilon
—
GU117620

papillomavirus

papillomavirus 1

Duck adenovirus 1
NC_001813
vertebrates
1
Adenoviridae,Atadenovirus,Duck adenovirus A
—
KF286430

Duck adenovirus A
NC_001813
vertebrates
1
Adenoviridae,Atadenovirus,Duck adenovirus A
—
Y09598

Duck astrovirus 1
NC_012437
vertebrates
5
Astroviridae,Avastrovirus,Duck astrovirus
—
JX439643,FJ919225,

GII,A

FJ919228,FJ919226,

FJ919227

Duck astrovirus C-NGB
NC_012437
vertebrates
1
Astroviridae,Avastrovirus,Duck astrovirus
—
FJ434664

GII,A

Duck circovirus
NC_005053
vertebrates
47
Circoviridae,Circovirus,Duck circovirus
—
KC460533,HG532019

,NC_00722

,GU131340,EU49930

0,NC_0065

9,EU344803,HM1623

61

48,EU022375,HM162

351,KC460528,JX241

046,EU344805,GU13

1343,JX241045,EU34

4804,EU499310,JQ7

40360,KC460530,HM

162349,HM162352,K

C460527,GU131341,

JQ740361,KC460532

,KC460526,KC46052

5,HM162347,KC4605

24,HM162345,KC460

529,KF726087,JQ740

362,KC460535,GU13

1342,EU499311,GQ4

23740,HM162353,GU

014543,GQ423747,H

M162350,JQ740363,

EU344806,HM16234

6,KC460534,EU3448

02,EU022374,KC460

531,EU344807

Duck coronavirus
NC_010800
vertebrates
1
Coronaviridae,Gammacoronavirus,Avian
—
JF705860

,NC_00145

coronavirus

1

Duck hepatitis A virus
NC_008250
vertebrates
13
Picornaviridae,Avihepatovirus,Duck hepatitis
—
JX235698,JQ301467,

A virus

GU066820,EU352805

,HQ654774,GU06682

4,GU066825,GU0668

23,GU944671,GU066

822,GUO66819,KC89

3553,GU066821

Duck hepatitis A virus 1
NC_008250
vertebrates
30
Picornaviridae,Avihepatovirus,Duck hepatitis
—
JF828983,JF828984,

A virus

DQ249299,JF914945,

JQ316452,JF828989,

JF828992,JF828996,

JF829000,KC904272,

JF828985,JF828987,

JF828998,JF828994,

JF828986,JF828997,

JF828991,JF828993,

JF828982,JF828999,

DQ226541,JQ031262

,JF828990,JQ804521

,JF828988,JF828995,

JX390984,JQ804522,

JX390982,JX390983

Duck hepatitis A virus 3
NC_008250
vertebrates
6
Picornaviridae,Avihepatovirus,Duck hepatitis
—
DQ256132,KC993890

A virus

,JQ409566,JF835025

,JF914944,JX312194

Duck hepatitis B virus
NC_001344
vertebrates
43
Hepadnaviridae,Avihepadnavirus,Duck
—
DQ195079,AY494850

hepatitis B virus

,AF404406,AF047045

,M60677,EU429326,X

60213,JX469898,KO1

834,AY433937,X5856

7,HM043822,AY2509

04,AY250901,HQ214

130,AY494851,X5856

8,X58569,AF493986,

M32990,X74623,AY2

94028,EU429324,JX4

69896,AY250902,AY

392760,AY294656,H

0132730,AJQ06350,

M32991,HM590411,D

0276978, M21953,AY

536371,AF505512,AY

521226,AY294029,A

Y521227,HQ328779,

X12798,JX469897,E

U429325,AY250903

Duck hepatitis virus 1
NC_008250
vertebrates
44
Picornaviridae,Avihepatovirus,Duck hepatitis
—
FJ157172,FJ157179,

A virus

EU395435,EU888310

,FJ436047,FJ157173,

EU841005,DQ864514

,FJ157174,EU371557

,FJ496339,EU395436

,FJ496344,DQ249301

,EU395439,EF58520

0,EF427899,EF15131

2,EU395438,EU2640

72,FJ496341,EF3827

78,FJ157177,EF1513

13,FJ496340,FJ1571

76,DQ219396,EU877

916,EU395440,GQ13

0377,FJ496343,EF42

7900,EF093502,DQ8

86445,FJ157178,FJ4

96342,EU747874,FJ1

57175,EU753359,FJ9

71623,EU395437,FJ1

57180,EF417871,DQ

249300

Duck hepatitis virus 1 strain
NC_008250
vertebrates
1
Picornaviridae,Avihepatovirus,Duck hepatitis
—
EF067923

04G

A virus

Duck hepatitis virus 1 strain
NC_008250
vertebrates
1
Picornaviridae,Avihepatovirus,Duck hepatitis
—
EF067924

90D

A virus

Duck hepatitis virus AP-
NC_008250
vertebrates
1
Picornaviridae,Avihepatovirus,Duck hepatitis
—
DQ256133

04009

A virus

Duck hepatitis virus AP-
NC_008250
vertebrates
1
Picornaviridae,Avihepatovirus,Duck hepatitis
—
DQ256134

04203

A virus

Duck hepatitis virus DHV-
NC_008250
vertebrates
1
Picornaviridae,Avihepatovirus,Duck hepatitis
—
DQ812094

HS

A virus

Duck hepatitis virus DHV-
NC_008250
vertebrates
1
Picornaviridae,Avihepatovirus,Duck hepatitis
—
DQ812092

HSS

A virus

Duck hepatitis virus
NC_008250
vertebrates
1
Picornaviridae,Avihepatovirus,Duck hepatitis
—
HQ232302

FC64/CHN/2009

A virus

Duck hepatitis virus G
NC_008250
vertebrates
1
Picornaviridae,Avihepatovirus,Duck hepatitis
—
EU755009

A virus

Duck hepatitis virus GD
NC_008250
vertebrates
1
Picornaviridae,Avihepatovirus,Duck hepatitis
—
GQ122332

A virus

Duck hepatitis virus SDQ1
NC_008250
vertebrates
1
Picornaviridae,Avihepatovirus,Duck hepatitis
—
GQ485310

A virus

Duck hepatitis virus SDQ2
NC_008250
vertebrates
1
Picornaviridae,Avihepatovirus,Duck hepatitis
—
GQ485311

A virus

Duck hepatitis virus YYF-
NC_008250
vertebrates
1
Picornaviridae,Avihepatovirus,Duck hepatitis
—
DQ812093

2008

A virus

Duck reovirus
NC_015126
vertebrates
3
Reoviridae,Orthoreovirus,Avian orthoreovirus
seg.
KF154110,KC493572

L1
,JX478250

Duck reovirus
NC_015127
vertebrates
3
Reoviridae,Orthoreovirus,Avian orthoreovirus
seg.
KF154111,JX478251,

L2
KC493573

Duck reovirus
NC_015128
vertebrates
3
Reoviridae,Orthoreovirus,Avian orthoreovirus
seg.
KF154112,KC493574

L3
,JX478252

Duck reovirus
NC_015129
vertebrates
3
Reoviridae,Orthoreovirus,Avian orthoreovirus
seg.
KF154113,JX478253,

M1
JX440513

Duck reovirus
NC_015130
vertebrates
3
Reoviridae,Orthoreovirus,Avian orthoreovirus
seg.
KF154114,JX478254,

M2
JX440514

Duck reovirus
NC_015131
vertebrates
3
Reoviridae,Orthoreovirus,Avian orthoreovirus
seg.
JX478255,JX440512,

M3
KF154115

Duck reovirus
NC_015132
vertebrates
1
Reoviridae,Orthoreovirus,Avian orthoreovirus
seg.
KF689545

S1

Duck reovirus
NC_015133
vertebrates
8
Reoviridae,Orthoreovirus,Avian orthoreovirus
seg.
JX852430,KF154117,

S2
JX852432,JX852431,

JX852434,JQ863359,

JX852433,JX478257

Duck reovirus
NC_015134
vertebrates
8
Reoviridae,Orthoreovirus,Avian orthoreovirus
seg.
KF154118,JX826588,

S3
KF163096,KF163098,

JX478258,KF163097,

KF163099,KF163095

Duck reovirus
NC_015135
vertebrates
9
Reoviridae,Orthoreovirus,Avian orthoreovirus
seg.
JX826589,KF163100,

S4
KF163104,KF163102,

JX478259,KF154119,

KF163103,JQ922269,

KF163101

Duck reovirus
NC_015126
vertebrates
1
Reoviridae,Orthoreovirus,Avian orthoreovirus
seg.
KC312700

NP03/CHN/2009

L1

Duck reovirus
NC_015127
vertebrates
1
Reoviridae,Orthoreovirus,Avian orthoreovirus
seg.
KC312701

NP03/CHN/2009

L2

Duck reovirus
NC_015128
vertebrates
1
Reoviridae,Orthoreovirus,Avian orthoreovirus
seg.
KC312702

NP03/CHN/2009

L3

Ectromelia virus
NC_004105
vertebrates
2
Poxviridae,Orthopoxvirus,Ectromelia virus
—
JO410350,AF012825

Eel picornavirus 1
NC_022332
vertebrates
1
Picornaviridae, Eel picornavirus 1
—
KC843627

Eel virus European X
NC_022581
vertebrates
1
Rhabdoviridae,Perhabdovirus,Anguillid
—
FN557213

rhabdovirus

Eidolon helvum parvovirus
NC_016744
vertebrates
1
Parvoviridae,Eidolon helvum parvovirus 1
—
JQ037753

1

Eidolon polyomavirus 1
NC_020068
vertebrates
1
Polyomaviridae,Polyomavirus,Eidolon
—
JX520660

polyomavirus 1

Elephant endotheliotropic
NC_020474
vertebrates
1
Herpesviridae,Proboscivirus,Elephantid
—
KC618527

herpesvirus 1A

herpesvirus 1

Elephantid herpesvirus 1
NC_020474
vertebrates
2
Herpesviridae,Proboscivirus,Elephantid
—
KC462165,KC462164

herpesvirus 1

Encephalomyocarditis virus
NC_001479
vertebrates
16
Picornaviridae,Cardiovirus,Encephalomyocard
—
M37588,AY296731,K

itis virus

F293299,FJ897755,E

U780149,X87335,DO

288856,M22458,M22

457,EU780148,AF35

6822,X74312,DQ464

062,KF709977,M818

61,DQ464063

Endogenous mouse
NC_001503
vertebrates
1
Retroviridae,Betaretrovirus,Mouse mammary
—
AF228550

mammary tumor virus Mtv1

tumor virus

Enterovirus 103
NC_010415
vertebrates
1
Picornaviridae,Enterovirus,Enterovirus J
—
FJQ07373

Enterovirus 103
NC_013695
vertebrates
1
Picornaviridae,Enterovirus,Enterovirus J
—
FJQ07373

Enterovirus E
NC_001859
vertebrates
1
Picornaviridae,Enterovirus,Enterovirus E
—
DQ0214

Enterovirus E
NC_021220
vertebrates
2
Picornaviridae,Enterovirus,Enterovirus F
—
DQ092795,DQ09279

4

Enterovirus F
NC_021220
vertebrates
2
Picornaviridae,Enterovirus,Enterovirus F
—
KC748420,DQ092770

Enterovirus J
NC_010415
vertebrates
1
Picornaviridae,Enterovirus,Enterovirus J
—
AF414372

Enterovirus J
NC_013695
vertebrates
2
Picornaviridae,Enterovirus,Enterovirus J
—
AF414372,AF414373

Enzootic nasal tumor virus
NC_007015
vertebrates
5
Retroviridae,Betaretrovirus,Ovine enzootic
—
FJ744146,FJ744150,

nasal tumor virus

FJ744148,FJ744147,

FJ744149

Enzootic nasal tumour virus
NC_004994
vertebrates
2
Retroviridae,Betaretrovirus,Enzootic nasal
—
HM104174,AY197548

of goats

tumour virus of goats

Epinephelus tauvina
NC_004136
vertebrates
2
Nodaviridae,Betanodavirus,Epinephelus
seg.
AF281657,AF318942

nervous necrosis virus

tauvina nervous necrosis virus
RNA 2

Epinephelus tauvina
NC_004137
vertebrates
2
Nodaviridae,Betanodavirus,Epinephelus
seg.
AF326776,AF319555

nervous necrosis virus

tauvina nervous necrosis virus
RNA 1

Epsilonpapillomavirus 1
NC_004195
vertebrates
1
Papillomaviridae,Epsilonpapillomavirus,Epsilo
—
AF457465

npapillomavirus 1

Equid herpesvirus 1
NC_001491
vertebrates
3
Herpesviridae,Varicellovirus,Equid
—
AP012321,AY665713

herpesvirus 1

,AY464052

Equid herpesvirus 2
NC_001650
vertebrates
1
Herpesviridae,Percavirus,Equid herpesvirus 2
—
U20824

Equid herpesvirus 4
NC_001844
vertebrates
1
Herpesviridae,Varicellovirus,Equid
—
AF030027

herpesvirus 4

Equid herpesvirus 8
NC_017826
vertebrates
1
Herpesviridae,Varicellovirus,Equid
—
JQ343919

herpesvirus 8

Equid herpesvirus 9
NC_011644
vertebrates
1
Herpesviridae,Varicellovirus,Equid
—
AP010838

herpesvirus 9

Equine arteritis virus
NC_002532
vertebrates
33
Arteriviridae,Arterivirus,Equine arteritis virus
—
GQ903801,X53459,A

Y349168,GQ903807,

JN211318,EU586274,

EU252114,GQ90380

6,GQ903800,EU2521

13,GQ903798,GQ903

805,GQ903811,JN21

1316,GQ903795,GQ9

03810,EU586275,GQ

903804,GQ903809,G

0903802,A45589,JN

211320,EU586273,A

Y349167,JN211319,J

N211317,GQ903799,

DQ846750,GQ90379

7,GQ903808,GQ9038

03,GQ903794,GQ903

796

Equine coronavirus
NC_010327
vertebrates
1
Coronaviridae,Betacoronavirus,Betacoronavir
—
EF446615

,NC_00773

us 1

2,NC_0051

47,NC_003

045

Equine foamy virus
NC_002201
vertebrates
1
Retroviridae,Spumavirus,Equine foamy virus
—
AF201902

Equine infectious anemia
NC_001450
vertebrates
26
Retroviridae,Lentivirus,Equine infectious
—
M87581,U01866,HM1

virus

anemia virus

41912,HM141917,HM

141921,AF327877,H

M141915,HM141918,

HM141913,HM14191

9,AF327878,HM1419

14,JXQ03263,AF0163

16,HM141909,HM141

922,AF028231,HM14

1920,AF033820,M16

575,HM141911,HM14

1910,AF028232,HM1

41916,AF247394,HM

141923

Equine papillomavirus 2
NC_012123
vertebrates
2
Papillomaviridae,Dyoiotapapillomavirus,Equine
—
EU503122,HM46197

papillomavirus 2

3

Equine papillomavirus 3
NC_017862
vertebrates
1
Papillomaviridae,Equine papillomavirus 3
—
GU384895

Equine papillomavirus type
NC_020500
vertebrates
1
Papillomaviridae,Equine papillomavirus type
—
JQ965698

6

6

Equine pegivirus 1
NC_020902
vertebrates
1
Flaviviridae,Pegivirus,Equine pegivirus 1
—
KC410872

Equine polyomavirus
NC_017982
vertebrates
1
Polyomaviridae,Polyomavirus,Equine
—
JQ412134

polyomavirus

Equine rhinitis A virus
NC_003982
vertebrates
8
Picornaviridae,Aphthovirus,Equine rhinitis A
—
DQ268580,DQ27212

virus

8,DQ272577,X96870,

DQ272127,JX294351

,DQ272578,L43052

Equine rhinitis B virus 1
NC_003983
vertebrates
1
Picornaviridae,Erbovirus,Equine rhinitis B
—
X96871

virus

Equine rhinitis B virus 2
NC_003983
vertebrates
1
Picornaviridae,Erbovirus,Equine rhinitis B
—
AF361253

virus

Equus caballus
NC_003748
vertebrates
1
Papillomaviridae,Zetapapillomavirus,Zetapapill
—
AF498323

papillomavirus 1

omavirus 1

Equus ferus caballus
NC_020085
vertebrates
1
Papillomaviridae,Equus ferus caballus
—
JQ031032

papillomavirus type 4

papillomavirus type 4

Equus ferus caballus
NC_020084
vertebrates
1
Papillomaviridae,Equus ferus caballus
—
JQ031033

papillomavirus type 5

papillomavirus type 5

Equus ferus caballus
NC_020501
vertebrates
1
Papillomaviridae,Equus ferus caballus
—
JXQ35935

papillomavirus type 7

papillomavirus type 7

Erethizon dorsatum
NC_006951
vertebrates
1
Papillomaviridae,Sigmapapillomavirus,Sigmap
—
AY684126

papillomavirus type 1

apillomavirus 1

Erinaceus europaeus
NC_011765
vertebrates
1
Papillomaviridae,Dyoetapapillomavirus,Dyoeta
—
FJ379293

papillomavirus

papillomavirus 1

Espirito Santo virus
NC_016517
vertebrates
1
Birnaviridae,Espirito Santo virus
seg. B
JN589002

Espirito Santo virus
NC_016518
vertebrates
1
Birnaviridae,Espirito Santo virus
seg. A
JN589003

European brown hare
NC_002615
vertebrates
3
Caliciviridae,Lagovirus,European brown hare
—
KC832838,KC832839

syndrome virus

syndrome virus

,Z69620

European catfish virus
NC_017940
vertebrates
1
Incloviridae,Ranavirus,European catfish virus
—
JQ724856

European elk
NC_001524
vertebrates
1
Papillomaviridae,Deltapapillomavirus,Deltapap
—
M15953

papillomavirus

illomavirus 1

Exogenous mouse
NC_001503
vertebrates
2
Retroviridae,Betaretrovirus,Mouse mammary
—
AF228551,AF228552

mammary tumor virus

tumor virus

FBR murine osteosarcoma
NC_001506
vertebrates
1
Retroviridae,Gammaretrovirus,Murine
—
K02712

virus

osteosarcoma virus

Fathead minnow
NC_023437
vertebrates
1
Picornaviridae,Fathead minnow picornavirus
—
KC465953

picornavirus

Felid herpesvirus 1
NC_013590
vertebrates
1
Herpesviridae,Varicellovirus,Felid herpesvirus
—
FJ478159

1

Feline astrovirus 2
NC_022249
vertebrates
1
Astroviridae,Mamastrovirus,Feline astrovirus 2
—
KF499111

Feline astrovirus Viseu
NC_022249
vertebrates
1
Astroviridae,Mamastrovirus,Feline astrovirus 2
—
KF374704

Feline bocavirus
NC_017823
vertebrates
3
Parvoviridae,Bocavirus,Feline bocavirus
—
JQ692586,JQ692585,

JQ692587

Feline bocavirus 2
NC_022800
vertebrates
1
Parvoviridae,Bocavirus,Feline bocavirus 2
—
KF792837

Feline calicivirus
NC_001481
vertebrates
28
Caliciviridae,Vesivirus,Feline calicivirus
—
KC835209,AY560117

,JX519213,JX519209,

JN210884,JN210886,

AY560118,M86379,L

40021,JX519211,AY5

60113,JN210890,U13

992,GU214989,JN21

0889,AY560114,JN21

0888,DQ424892,JX5

19214,JN210887,AY5

60116,AF479590,JN2

10885,JX519212,D31

836,JX519210,AY560

115,AF109465

Feline coronavirus
NC_002306
vertebrates
8
Coronaviridae,Alphacoronavirus,
—
JQ408980,GQ152141

Alphacoronavirus 1

,KF530123,DQ01092

1,JN634064, DQ2863

89,DQ848678,EU186

072

Feline coronavirus RM
NC_002306
vertebrates
1
Coronaviridae,Alphacoronavirus,
—
FJ938051

Alphacoronavirus 1

Feline coronavirus UU10
NC_002306
vertebrates
1
Coronaviridae,Alphacoronavirus,
—
FJ938059

Alphacoronavirus 1

Feline coronavirus UU11
NC_002306
vertebrates
1
Coronaviridae,Alphacoronavirus,
—
FJ938052

Alphacoronavirus 1

Feline coronavirus UU15
NC_002306
vertebrates
1
Coronaviridae,Alphacoronavirus,
—
FJ938057

Alphacoronavirus 1

Feline coronavirus UU16
NC_002306
vertebrates
1
Coronaviridae,Alphacoronavirus,
—
FJ938058

Alphacoronavirus 1

Feline coronavirus UU17
NC_002306
vertebrates
1
Coronaviridae,Alphacoronavirus,
—
HQ012367

Alphacoronavirus 1

Feline coronavirus UU18
NC_002306
vertebrates
1
Coronaviridae,Alphacoronavirus,
—
HQ012368

Alphacoronavirus 1

Feline coronavirus UU19
NC_002306
vertebrates
1
Coronaviridae,Alphacoronavirus,
—
HQ392470

Alphacoronavirus 1

Feline coronavirus UU2
NC_002306
vertebrates
1
Coronaviridae,Alphacoronavirus,
—
FJ938060

Alphacoronavirus 1

Feline coronavirus UU20
NC_002306
vertebrates
1
Coronaviridae,Alphacoronavirus,
—
HQ392471

Alphacoronavirus 1

Feline coronavirus UU21
NC_002306
vertebrates
1
Coronaviridae,Alphacoronavirus,
—
HQ012369

Alphacoronavirus 1

Feline coronavirus UU22
NC_002306
vertebrates
1
Coronaviridae,Alphacoronavirus,
—
GU553361

Alphacoronavirus 1

Feline coronavirus UU23
NC_002306
vertebrates
1
Coronaviridae,Alphacoronavirus,
—
GU553362

Alphacoronavirus 1

Feline coronavirus UU24
NC_002306
vertebrates
1
Coronaviridae,Alphacoronavirus,
—
HQ012370

Alphacoronavirus 1

Feline coronavirus UU3
NC_002306
vertebrates
1
Coronaviridae,Alphacoronavirus,
—
FJ938061

Alphacoronavirus 1

Feline coronavirus UU30
NC_002306
vertebrates
1
Coronaviridae,Alphacoronavirus,
—
HQ392472

Alphacoronavirus 1

Feline coronavirus UU31
NC_002306
vertebrates
1
Coronaviridae,Alphacoronavirus,
—
HQ012371

Alphacoronavirus 1

Feline coronavirus UU34
NC_002306
vertebrates
1
Coronaviridae,Alphacoronavirus,
—
HQ012372

Alphacoronavirus 1

Feline coronavirus UU4
NC_002306
vertebrates
1
Coronaviridae,Alphacoronavirus,
—
FJ938054

Alphacoronavirus 1

Feline coronavirus UU40
NC_002306
vertebrates
1
Coronaviridae,Alphacoronavirus,
—
HQ392469

Alphacoronavirus 1

Feline coronavirus UU47
NC_002306
vertebrates
1
Coronaviridae,Alphacoronavirus,
—
JN183882

Alphacoronavirus 1

Feline coronavirus UU5
NC_002306
vertebrates
1
Coronaviridae,Alphacoronavirus,
—
FJ938056

Alphacoronavirus 1

Feline coronavirus UU54
NC_002306
vertebrates
1
Coronaviridae,Alphacoronavirus,
—
JN183883

Alphacoronavirus 1

Feline coronavirus UU7
NC_002306
vertebrates
1
Coronaviridae,Alphacoronavirus,
—
FJ938053

Alphacoronavirus 1

Feline coronavirus UU8
NC_002306
vertebrates
1
Coronaviridae,Alphacoronavirus,
—
FJ938055

Alphacoronavirus 1

Feline coronavirus UU9
NC_002306
vertebrates
1
Coronaviridae,Alphacoronavirus,
—
FJ938062

Alphacoronavirus 1

Feline foamy virus
NC_001871
vertebrates
8
Retroviridae,Spumavirus,Feline foamy virus
—
AJ564746,KC292055,

U85043,AJ223851,K

C292054,AB052797,

Y08851,AJ564745

Feline immunodeficiency
NC_001482
vertebrates
27
Retroviridae,Lentivirus,Feline
—
EF455611,EF455612,

virus

immunodeficiency virus

EF455609,EU117991

,EF455608,EF455603

,M36968,AY713445,E

U117992,M25381,AY

600517,X57002,U569

28,AF474246,DQ192

583,EF455607,DDQ2

9017,EF455606,EF45

5614, E43300,EF4556

13,EF455615,EF4556

10,EF455605, M5941

8,U11820,EF455604

Feline infectious peritonitis
NC_002306
vertebrates
5
Coronaviridae,Alphacoronavirus,Alphacorona
—
JQ408981,KC461236

virus

virus 1

,KC461237,KC46123

5,AY994055

Feline leukemia virus
NC_001940
vertebrates
3
Retroviridae,Gammaretrovirus,Feline
—
AB060732,M18247,A

leukemia virus

F052723

Feline papillomavirus
NC_004765
vertebrates
1
Papillomaviridae,Lambdapapillomavirus,Lamb
—
AF377865

dapapillomavirus 1

Feline picornavirus
NC_016156
vertebrates
5
Picornaviridae,Feline picornavirus
—
JN572118,JN572117,

JN572116,JN572115,

JN572119

Feline sakobuvirus A
NC_022802
vertebrates
1
Picornaviridae,Feline sakobuvirus A
—
KF387721

Felis catus papillomavirus 4
NC_022373
vertebrates
1
Papillomaviridae,Taupapillomavirus,Felis
—
KF147892

catus papillomavirus 4

Felis catus papillomavirus-
NC_021472
vertebrates
1
Papillomaviridae,Taupapillomavirus,Felis
—
JX972168

3

catus papillomavirus 3

Felis domesticus
NC_004765
vertebrates
1
Papillomaviridae,Lambdapapillomavirus,Lamb
—
AF480454

papillomavirus type 1

dapapillomavirus 1

Ferret papillomavirus
NC_022253
vertebrates
1
Papillomaviridae,Ferret papillomavirus
—
KF006988

Finch circovirus
NC_008522
vertebrates
1
Circoviridae,Circovirus,Finch circovirus
—
DQ845075

Finch polyomavirus
NC_007923
vertebrates
1
Polyom aviridae, Polyomavirus,Finch
—
DQ192571

polyomavirus

Florida woods cockroach-
NC_020206
vertebrates
1
Circoviridae,Florida woods cockroach-
—
JX569794

associated cyclovirus

associated cyclovirus

Foot-and-mouth disease
NC_004004
vertebrates
8
Picornaviridae,Aphthovirus,Foot-and-mouth
—
AM503966,XQ0871,A

virus

disease virus

M409190,AM503965,

M10975,AJQ07572,AJ

007347,AF154271

Foot-and-mouth disease
NC_004004
vertebrates
86
Picornaviridae,Aphthovirus,Foot-and-mouth
—
KC440881,HQ832576

virus-type A

disease virus

,AY593784,AY59380

2,HQ832585,HQ8325

79,HQ832582,JF7498

43,AY593770,AY593

765,HQ832581,KC58

8943,AY593753,AY5

93788,AY593793,AY

593803,HQ632773,A

Y593760,AY593774,

AY593769,HQ832587

,AY593776,AY59375

7,AY593751,AY5937

54,HQ832588,HQ832

592,AY593780,AY59

3758,KC440882,X748

12,JF749841,HQ8325

91,AY593779,JN0067

22,HQ832586,AY593

783,AY593771,AY59

3759,AY593762,AY5

93772,HM854025,HM

854023,HQ832583,H

0832589,GQ406250,

AY593789,HQ832584

,HM854024,AY59379

1,AY593756,GQ4062

52,AY593764,HQ832

580,GQ406249,AY59

3790,HQ832578,AY5

93773,AY593794,AY

593786,AY593778,A

Y593767,AY593792,

HQ268509,AY593785

,HQ832577,AY59377

5,AY593761,AY5937

82,AY593763,GQ406

251,JF749848,AY593

768,GQ406248,AY59

3801,AY593777,HM8

54022,HQ832590,AY

593755,AY593766,A

Y593781,GQ406247,

EF117837,AY593752,

HM854021,AY593787

Foot-and-mouth disease
NC_004004
vertebrates
46
Picornaviridae,Aphthovirus,Foot-and-mouth
—
GU125646,AY593798

virus-type Asia 1

disease virus

,DQ989320,DQ98931

4,EF149009,DQ5334

83,DQ989312,DQ989

308,DQ989319,DQ98

9311,DQ989309,KC4

62884,DQ989322,AY

593796,DQ989307,D

0989310,EF149010,

AY593799,HQ632774

,GU125645,AY30499

4,DQ989317,DQ9893

03,JN006719,DQ989

305,DQ989313,DQ98

9323,AY390432,DQ9

89316,AY593800,JF7

39177,DQ989315,JN

006720,AY687333,D

0989306,HQ631363,

DQ989318,GU93168

2,AY593795,FJ90680

2,DQ989321,AY6873

34,KC412634,EF614

458,AY593797,DQ98

9304

Foot-and-mouth disease
NC_004004
vertebrates
16
Picornaviridae,Aphthovirus,Foot-and-mouth
—
AF274010,AJ133358,

virus-type C

disease virus

DQ409184,AJ133357

,AY593810,DQ40919

0,DQ409191,DQ4091

83,DQ409187,AM409

325,AJ133359,DQ40

9186,DQ409189,DQ4

09185,FJ824812,DQ4

09188

Foot-and-mouth disease
NC_004004
vertebrates
200
Picornaviridae,Aphthovirus,Foot-and-mouth
—
JX869181,DQ404158

virus-type 0

,JXQ40485,AJ320488,

disease virus

JXQ40491,KF501486,

DQ404173,EU448380

,JX869178,AY593833

,JX570654,HM22966

1,AY593815,DQ4041

70,AF506822,FJ5423

69,KF694737,HQ632

770,DQ404169,KF69

4738,JX570644,KF11

2889,EU448377,KF6

94743,EU448381,DQ

404167,DQ404159,J

X570647,JN998085,

GU125648,AY593821

,KF112888,JXQ40486

,JXQ40490,KF694739

,HQ268524,DQ40417

4,KF112883,AY59381

6,FJ542370,AJ53914

1,KF112887,FJ17566

6,AY593830,AJ53913

7,JXQ66664,EU44837

2,JX570646,EU44837

3,GU384683,EU4483

76,AJ633821,FJ1756

62,KF694742,JX8691

83,AY359854,JXQ404

87,DQ404160,EU214

601,JX570649,JX570

641,FJ542366,AY593

835,KF694734,AJ539

136,AY593812,HQ63

2772,JX570640,HQ0

09509,DQ404164,KF

112879,FJ175661,JX

570642,DQ404176,D

0404179,JXQ40501,A

J539140,KF112886,A

Y593817,KF694733,J

XQ40492,JXQ40494,E

U448371,AY593832,J

X869187,KF501487,A

Y593824,GU125647,

DQ404161,JXQ40497

,AY593819,JXQ40488

,JX869177,DQ40416

8,JX869180,DQ4041

71,AY593822,JX5706

45,GU125650,DQ404

165,HQ412603,AF02

6168,AJ539139,GU1

25649,FJ175664,AY5

93823,JX869188,AY3

33431,JX570651,AY5

93825,JX570648,KF6

94736,AY593811,JX8

69186,EU448375,AF

511039,DQ404162,J

N998086,AF308157,

EF614457,JXQ40499,

HQ632769,JX570638

,KF985189,FJ542371

,AJ539138,EU448378

,DQ404175,EU44837

4,AY593829,DQ4041

78,DQ478937,AY593

827,JQ900581,AY593

834,KF112881,JX570

655,JX570643,JX869

185,AB079061,AY59

3813,HQ632771,DQ4

04180,DQ404163,KF

501488,JX570639,FJ

542365,JF749851,JX

869182,JXQ40495,EU

448370,JXQ40493,D

0404177,JQ973889,J

XQ40496,AY593828,

AY593836,AY593820

,KF112882,EU44836

8,FJ542372,KF11288

5,KF694744,GU3846

82,JX570650,KF1128

84,EU448369,DQ248

888,JXQ40489,AY593

831,DQ404166,DQ11

9643,EF175732,JX57

0653,AY593837,FJ17

5663,KC503937,JXQ6

6665,JX869184,DQ4

04172,JX869179,KF6

94745,AY593826,KF6

94741,EU448379,HM

008917,KF112880,JX

040498,FJ542367,AY

593814,KF694740,JX

570652,FJ175665,AY

593818,FJ542368,DQ

478936,HQ632768,K

F694735,KC440883,J

XQ40500

Foot-and-mouth disease
NC_004004
vertebrates
10
Picornaviridae,Aphthovirus,Foot-and-mouth
—
AY593838,AY593845

virus-type SAT 1

disease virus

,AY593839,AY59384

1,AY593844,JF74986

0,AY593840,AY5938

43,AY593842,AY593

846

Foot-and-mouth disease
NC_004004
vertebrates
11
Picornaviridae,Aphthovirus,Foot-and-mouth
—
AY593849,JXQ14256,

virus-type SAT 2

disease virus

AF540910,JF749862,

AY593848,KC440884

,JF749861,AY593847

,AJ251473,JF749864,

JXQ14255

Foot-and-mouth disease
NC_004004
vertebrates
4
Picornaviridae,Aphthovirus,Foot-and-mouth
—
AY593852,AY593851

virus-type SAT 3

disease virus

,AY593850,AY59385

3

Foot-and-mouth disease
NC_004004
vertebrates
2
Picornaviridae,Aphthovirus,Foot-and-mouth
—
AY593804,AY593805

virus C1

disease virus

Foot-and-mouth disease
NC_004004
vertebrates
2
Picornaviridae,Aphthovirus,Foot-and-mouth
—
AY593806,AY593807

virus C3

disease virus

Foot-and-mouth disease
NC_004004
vertebrates
1
Picornaviridae,Aphthovirus,Foot-and-mouth
—
AY593808

virus C4

disease virus

Foot-and-mouth disease
NC_004004
vertebrates
1
Picornaviridae,Aphthovirus,Foot-and-mouth
—
AY593809

virus C5

disease virus

Foot-and-mouth disease
NC_004004
vertebrates
1
Picornaviridae,Aphthovirus,Foot-and-mouth
—
AY317098

virus HKN/2002

disease virus

Foot-and-mouth disease
NC_004004
vertebrates
1
Picornaviridae,Aphthovirus,Foot-and-mouth
—
AY686687

virus 0/ES/2001

disease virus

Foot-and-mouth disease
NC_004004
vertebrates
1
Picornaviridae,Aphthovirus,Foot-and-mouth
—
AF377945

virus 0/SKR/2000

disease virus

Foot-and-mouth disease
NC_004004
vertebrates
1
Picornaviridae,Aphthovirus,Foot-and-mouth
—
EF552688

virus 0/UKG/3952/2001

disease virus

Foot-and-mouth disease
NC_004004
vertebrates
1
Picornaviridae,Aphthovirus,Foot-and-mouth
—
EF552693

virus 0/UKG/4014/2001

disease virus

Foot-and-mouth disease
NC_004004
vertebrates
1
Picornaviridae,Aphthovirus,Foot-and-mouth
—
EF552689

virus 0/UKG/4141/2001

disease virus

Foot-and-mouth disease
NC_004004
vertebrates
1
Picornaviridae,Aphthovirus,Foot-and-mouth
—
EF552694

virus 0/UKG/4998/2001

disease virus

Foot-and-mouth disease
NC_004004
vertebrates
1
Picornaviridae,Aphthovirus,Foot-and-mouth
—
EF552696

virus 0/UKG/5470/2001

disease virus

Foot-and-mouth disease
NC_004004
vertebrates
1
Picornaviridae,Aphthovirus,Foot-and-mouth
—
EF552697

virus 0/UKG/5681/2001

disease virus

Foot-and-mouth disease
NC_004004
vertebrates
1
Picornaviridae,Aphthovirus,Foot-and-mouth
—
EF552690

virus 0/UKG/7039/2001

disease virus

Foot-and-mouth disease
NC_004004
vertebrates
1
Picornaviridae,Aphthovirus,Foot-and-mouth
—
EF552692

virus 0/UKG/7299/2001

disease virus

Foot-and-mouth disease
NC_004004
vertebrates
1
Picornaviridae,Aphthovirus,Foot-and-mouth
—
EF552691

virus 0/UKG/9161/2001

disease virus

Foot-and-mouth disease
NC_004004
vertebrates
1
Picornaviridae,Aphthovirus,Foot-and-mouth
—
EF552695

virus 0/UKG/9443/2001

disease virus

Fowl adenovirus B
NC_021221
vertebrates
1
Adenoviridae,Aviadenovirus,Fowl adenovirus
—
KC493646

B

Fowl adenovirus A
NC_001720
vertebrates
1
Adenoviridae,Aviadenovirus,Fowl adenovirus
—
U46933

A

Fowl adenovirus C
NC_015323
vertebrates
2
Adenoviridae,Aviadenovirus,Fowl adenovirus
—
HE608152,GU188428

C

Fowl adenovirus D
NC_000899
vertebrates
1
Adenoviridae,Aviadenovirus,Fowl adenovirus
—
AF083975

D

Fowl adenovirus E
NC_014969
vertebrates
1
Adenoviridae,Aviadenovirus,Fowl adenovirus
—
GU734104

E

Fowlpox virus
NC_002188
vertebrates
1
Poxviridae,Avipoxvirus,Fowlpox virus
—
AF198100

Fowlpox virus (isolate HP-
NC_002188
vertebrates
1
Poxviridae,Avipoxvirus,Fowlpox virus
—
AJ581527

438[Munich])

Francolinus leucoscepus
NC_013117
vertebrates
1
Papillomaviridae,Dyoepsilonpapillomavirus,Dy
—
EU188799

papillomavirus 1

oepsilonpapillomavirus 1

Friend murine leukemia
NC_001702
vertebrates
4
Retroviridae,Gammaretrovirus,Murine
—
D88386,XQ2794,A420

virus
,NC_00181

leukemia virus

90,M93134

9,NC_0013

62,NC_001

501

Fringilla coelebs
NC_004068
vertebrates
1
Papillomaviridae,Etapapillomavirus,Etapapillo
—
AY057109

papillomavirus

mavirus 1

Frog adenovirus 1
NC_002501
vertebrates
1
Adenoviridae,Siadenovirus,Frog adenovirus A
—
AF224336

Frog virus 3
NC_005946
vertebrates
1
Incloviridae,Ranavirus,Frog virus 3
—
AY548484

Fujinami sarcoma virus
NC_001403
vertebrates
2
Retroviridae,Alpharetrovirus,Fujinami sarcoma
—
AF033810,JQ2194

virus

GB virus A
NC_001837
vertebrates
3
Flaviviridae,Pegivirus,Pegivirus A
—
U22303,AF023425,A

F023424

Gallid herpesvirus 1
NC_006623
vertebrates
21
Herpesviridae,Iltovirus,Gallid herpesvirus 1
—
JX458822,JN596962,

JN580317,JN542533,

JX646898,JN804826,

JN580312,U80762,H

0630064,JN804827,J

N580313,JX646899,J

N580315,JN580314,J

N542535,JQ083494,J

N542534,JN596963,J

0083493,JN542536,J

N580316

Gallid herpesvirus 2
NC_002229
vertebrates
14
Herpesviridae,Mardivirus,Gallid herpesvirus 2
—
AF147806,AF243438,

JQ806362,JQ809692,

AY510475,JQ836662,

JQ820250,EU499381

,JX844666,DQ53034

8,JQ809691,EF52339

0,JQ314003,JQ80636

1

Gallid herpesvirus 2 strain
NC_002229
vertebrates
1
Herpesviridae,Mardivirus,Gallid herpesvirus 2
—
JF742597

814

Gallid herpesvirus 3
NC_002577
vertebrates
2
Herpesviridae,Mardivirus,Gallid herpesvirus 3
—
AB049735,HQ840738

Gammapapillomavirus
NC_014469
vertebrates
1
Papillomaviridae,Gammapapillomavirus,Gam
—
HM011570

HPV127

mapapillomavirus HPV127

Gibbon ape leukemia virus
NC_001885
vertebrates
2
Retroviridae,Gammaretrovirus,Gibbon ape
—
U60065,M26927

leukemia virus

Giraffe coronavirus
NC_010327
vertebrates
1
Coronaviridae,Betacoronavirus,Betacoronavir
—
EF424622

US/0H3-TC/2006
,NC_00773

us 1

2,NC_0051

47,NC_003

045

Giraffe coronavirus
NC_010327
vertebrates
1
Coronaviridae,Betacoronavirus,Betacoronavir
—
EF424623

US/0H3/2003
,NC_00773

us 1

2,NC_0051

47,NC_003

045

Goatpox virus G20-LKV
NC_004003
vertebrates
1
Poxviridae,Capripoxvirus,Goatpox virus
—
AY077836

Goatpox virus Pellor
NC_004003
vertebrates
1
Poxviridae,Capripoxvirus,Goatpox virus
—
AY077835

Golden ide reovirus
NC_010588
vertebrates
1
Reoviridae,Aquareovirus,Aquareovirus G
seg. 5
AF450324

Goose adenovirus 4
NC_017979
vertebrates
1
Adenoviridae,Aviadenovirus,Goose
—
JF510462

adenovirus A

Goose circovirus
NC_003054
vertebrates
24
Circoviridae,Circovirus,Goose circovirus
—
DQ192283,DQ19227

9,AY633653,DQ1922

82,AF536933,GU320

569,DQ192285,AF53

6934,AF536932,AF53

6939,AF536941,AF53

6940,AF536936,DQ1

92287,DQ192280,AJ

304456,AF536935,AF

536931,AF536938,AF

536937,AF418552,D

0192281,DQ192286,

DQ192284

Goose hemorrhagic
NC_004800
vertebrates
6
Polyomaviridae,Polyomavirus,Goose
—
HQ681904,HQ68190

polyomavirus

hemorrhagic polyomavirus

3,AY140894,HQ6819

05,JF304775,HQ6819

02

Goose orthoreovirus
NC_015126
vertebrates
1
Reoviridae,Orthoreovirus,Avian orthoreovirus
seg.
JX145328

L1

Goose orthoreovirus
NC_015127
vertebrates
1
Reoviridae,Orthoreovirus,Avian orthoreovirus
seg.
JX145329

L2

Goose orthoreovirus
NC_015128
vertebrates
1
Reoviridae,Orthoreovirus,Avian orthoreovirus
seg.
JX145330

L3

Goose orthoreovirus
NC_015129
vertebrates
1
Reoviridae,Orthoreovirus,Avian orthoreovirus
seg.
JX145331

M1

Goose orthoreovirus
NC_015130
vertebrates
1
Reoviridae,Orthoreovirus,Avian orthoreovirus
seg.
JX145332

M2

Goose orthoreovirus
NC_015131
vertebrates
1
Reoviridae,Orthoreovirus,Avian orthoreovirus
seg.
JX145333

M3

Goose orthoreovirus
NC_015132
vertebrates
1
Reoviridae,Orthoreovirus,Avian orthoreovirus
seg.
JX145334

S1

Goose orthoreovirus
NC_015133
vertebrates
1
Reoviridae,Orthoreovirus,Avian orthoreovirus
seg.
JX145335

S2

Goose orthoreovirus
NC_015134
vertebrates
1
Reoviridae,Orthoreovirus,Avian orthoreovirus
seg.
JX145336

S3

Goose orthoreovirus
NC_015135
vertebrates
1
Reoviridae,Orthoreovirus,Avian orthoreovirus
seg.
JX145337

S4

Goose parvovirus
NC_001701
vertebrates
12
Parvoviridae,Dependovirus,Goose parvovirus
—
EU583390,KC178571

,EU583389,JF333590

,KC184133,KC99673

0,U25749,EU583391,

EU583392,KC996729

,HQ891825,KC47806

6

Grass carp hemorrhagic
NC_005167
vertebrates
1
Reoviridae,Aquareovirus,Aquareovirus C
seg. 2
AF284502

virus

Grass carp hemorrhagic
NC_005168
vertebrates
1
Reoviridae,Aquareovirus,Aquareovirus C
seg. 3
AF284503

virus

Grass carp hemorrhagic
NC_005170
vertebrates
1
Reoviridae,Aquareovirus,Aquareovirus C
seg. 5
AF251262

virus

Grass carp hemorrhagic
NC_005171
vertebrates
1
Reoviridae,Aquareovirus,Aquareovirus C
seg. 6
AF239175

virus

Grass carp hemorrhagic
NC_005172
vertebrates
1
Reoviridae,Aquareovirus,Aquareovirus C
seg. 7
AF239174

virus

Grass carp hemorrhagic
NC_005174
vertebrates
1
Reoviridae,Aquareovirus,Aquareovirus C
seg. 9
AF284504

virus

Grass carp hemorrhagic
NC_005175
vertebrates
1
Reoviridae,Aquareovirus,Aquareovirus C
seg.
AF236688

virus

10

Grass carp hemorrhagic
NC_005176
vertebrates
1
Reoviridae,Aquareovirus,Aquareovirus C
seg.
AF234321

virus

11

Grass carp reovirus
NC_005166
vertebrates
4
Reoviridae,Aquareovirus,Aquareovirus C
seg. 1
AF260511,GQ896334

,KC847320,HQ23119

8

Grass carp reovirus
NC_005167
vertebrates
4
Reoviridae,Aquareovirus,Aquareovirus C
seg. 2
HQ231199,AF260512

,GQ896335,KC84732

1

Grass carp reovirus
NC_005168
vertebrates
4
Reoviridae,Aquareovirus,Aquareovirus C
seg. 3
AF260513,HQ231200

,GU350742,KC84732

2

Grass carp reovirus
NC_005169
vertebrates
4
Reoviridae,Aquareovirus,Aquareovirus C
seg. 4
KC847323,HQ231201

,GU350743,AF40339

0

Grass carp reovirus
NC_005170
vertebrates
4
Reoviridae,Aquareovirus,Aquareovirus C
seg. 5
AF403391,GQ896336

,HQ231202,KC84732

4

Grass carp reovirus
NC_005171
vertebrates
5
Reoviridae,Aquareovirus,Aquareovirus C
seg. 6
JN206664,AF403392,

GQ896337,KC84732

5,HQ231208

Grass carp reovirus
NC_005172
vertebrates
4
Reoviridae,Aquareovirus,Aquareovirus C
seg. 7
HQ231203,AF403393

,GU350744,KC84732

6

Grass carp reovirus
NC_005173
vertebrates
5
Reoviridae,Aquareovirus,Aquareovirus C
seg. 8
AF403394,AF259053,

GU350745, HQ23120

4,KC847327

Grass carp reovirus
NC_005174
vertebrates
4
Reoviridae,Aquareovirus,Aquareovirus C
seg. 9
GU350746,KC847328

,AF403395,HQ23120

5

Grass carp reovirus
NC_005175
vertebrates
5
Reoviridae,Aquareovirus,Aquareovirus C
seg.
GU350747,HQ23120

10
6,KC847329,AF4033

96,JN206665

Grass carp reovirus
NC_005176
vertebrates
4
Reoviridae,Aquareovirus,Aquareovirus C
seg.
KC847330,HQ231207

11
,AF403397,GU35074

Ground squirrel hepatitis
NC_001484
vertebrates
8
Hepadnaviridae,Orthohepadnavirus,Ground
—
K02715

virus

squirrel hepatitis virus

Grouper iridovirus
NC_006549
vertebrates
1
Iridoviridae,Ranavirus,Singapore grouper
—
AY666015

iridovirus

Gull circovirus
NC_008521
vertebrates
2
Circoviridae,Circovirus,Gull circovirus
—
DQ845074,JQ685854

Gyrovirus 4
NC_018401
vertebrates
1
Circoviridae,Gyrovirus,Gyrovirus 4
—
JX310702

Gyrovirus GyV3
NC_017091
vertebrates
1
Circoviridae,Gyrovirus,Gyrovirus GyV3
—
JQ308210

Gyrovirus Tu243
NC_022788
vertebrates
1
Circoviridae,Gyrovirus,Gyrovirus Tu243
—
KF294861

Gyrovirus Tu789
NC_022789
vertebrates
1
Circoviridae,Gyrovirus,Gyrovirus Tu789
—
KF294862

H-1 parvovirus
NC_001358
vertebrates
1
Parvoviridae,Parvovirus,H-1 parvovirus
—
XQ1457

HMO Astrovirus A
NC_013443
vertebrates
1
Astroviridae,Mamastrovirus,HMO Astrovirus A
—
GQ415660

Halastavi arva RNA virus
NC_016418
vertebrates
1
Halastavi arva RNA virus
—
JN000306

Hamster polyomavirus
NC_001663
vertebrates
8
Polyomaviridae,Polyomavirus,Hamster
—
JXQ36360,JX416850,

polyomavirus

M26281,XQ2449,JX4

16853,JX416852,J X4

16849,JX416851

Hepatitis A virus
NC_001489
vertebrates
77
Picornaviridae,Hepatovirus,Hepatitis A virus
—
AB839696,AY644337

,EU526089,X75215,M

20273,X75214,AB618

529,FJ360733,AB839

694,HQ437707,AB27

9732,EF406359,DQ9

91030,AB020565,KC

182588,X75216,EF40

6363,AB793726,AB2

79734,EU251188,JQ

655151,AB279733,A

B258387,AB839692,

AB839693,KC182589

,EF406358,AF314208

,DQ991029,FJ360731

,HM769724,AB79372

5,EU011791,AB8198

70,K02990,AB020566

,AB020568,FJ360734

,KC182590,FJ360735

,JQ425480,AY644670

,EF207320,AF268396

,KC182587,AF51253

6,AB618531,EU1313

73,M59809,AB83969

5,AJ299464,EF40636

0,AB300205,KF77384

2,AF357222,AF48532

8,AB020564,M14707,

AB819869,AB425339

,DQ646426,EF40636

1,AB020569,AB0205

67,AB839697,AB279

735,FJ360730,FJ360

732,KF569906,M166

32,EU526088,M5980

8,EF406357,AY64467

6,X83302,EF406362,

M59810

Hepatitis GB virus B
NC_001655
vertebrates
10
Flaviviridae,Hepatitis GB virus B
—
AB630364,AF179612,

AB630361,AB630360

,U22304,AB630359,A

J277947,AB630363,A

B630362,AB630358

Heron hepatitis B virus
NC_001486
vertebrates
1
Hepadnaviridae,Avihepadnavirus,Heron
—
M22056

hepatitis B virus

Hipposideros bat
NC_018871
vertebrates
6
Coronaviridae,Alphacoronavirus,Bat
—
JQ989266,JQ989272,

coronavirus H KU10

coronavirus H KU10

JQ989269,JQ989273,

JQ989267,JQ989268

Hirame rhabdovirus
NC_005093
vertebrates
2
Rhabdoviridae,Novirhabdovirus,H irame
—
AF104985,FJ376982

rhabdovirus

Human T-cell lymphotropic
NC_001815
vertebrates
1
Retroviridae,Deltaretrovirus,Primate T-
—
Y13051

virus type 2b
,NC_00148

lymphotropic virus 2

8

Human T-lymphotropic
NC_000858
vertebrates
18
Retroviridae,Deltaretrovirus,Primate T-
—
JX891479,L36905,AF

virus 1
,NC_00143

lymphotropic virus 1

259264,JQ2029,HQ60

6

6138,D13784,JX8914

78,AF042071,AF1391

70,U19949,HQ60613

7,AY563954,AY5639

53,KC807984,L03561

,L02534,AB513134,L

03562

Human T-lymphotropic
NC_001815
vertebrates
10
Retroviridae,Deltaretrovirus,Primate T-
—
GU212854,AF074965

virus 2
,NC_00148

lymphotropic virus 2

,AF139382,L20734,A

8

F326584,X89270, L11

456,AF412314,AF326

583, Y14365

Human T-lymphotropic
NC_003323
vertebrates
4
Retroviridae,Deltaretrovirus,Primate T-
—
EU649782,DQ093792

virus 3

lymphotropic virus 3

,DQ462191,GQ46360

Human T-lymphotropic
NC_011800
vertebrates
2
Retroviridae,Deltaretrovirus,Human T-
—
EF488483

virus 4

lymphotropic virus 4

Human TMEV-Iike
NC_009448
vertebrates
1
Picornaviridae,Cardiovirus,Theilovirus
—
GU595289

cardiovirus
,NC_00136

6,NC_0108

10

Human adenovirus 4
NC_003266
vertebrates
6
Adenoviridae,Mastadenovirus,Human
—
AY594254,KF006344,

,NC_01782

adenovirus E

AY594253,AY599837

5

,AY599835,AY45865

Human adenovirus 41
NC_001454
vertebrates
3
Adenoviridae,Mastadenovirus,Human
—
DQ315364,AB728839

adenovirus F

,HM565136

Human adenovirus 52
NC_006879
vertebrates
1
Adenoviridae,Mastadenovirus,Human
—
DQ923122

adenovirus G

Human adenovirus E
NC_003266
vertebrates
2
Adenoviridae,Mastadenovirus,Human
—
AY487947,EF371058

,NC_01782

adenovirus E

5

Human adenovirus F
NC_001454
vertebrates
1
Adenoviridae,Mastadenovirus,Human
—
L19443

adenovirus F

Human betacoronavirus 2c
NC_019843
vertebrates
1
Coronaviridae,Betacoronavirus,Middle East
—
JX869059

EMC/2012

respiratory syndrome coronavirus

Human betacoronavirus 2c
NC_019843
vertebrates
1
Coronaviridae,Betacoronavirus,Middle East
—
KC667074

England-Qatar/2012

respiratory syndrome coronavirus

Human betacoronavirus 2c
NC_019843
vertebrates
1
Coronaviridae,Betacoronavirus,Middle East
—
KC776174

Jordan-N 3/2012

respiratory syndrome coronavirus

Human bocavirus 4
NC_007018
vertebrates
1
Parvoviridae,Parvovirus,Human parvovirus 4
—
HQ113143

Human coronavirus 0C43
NC_010327
vertebrates
6
Coronaviridae,Betacoronavirus,
—
AY903459,AY585229

,NC_00773

Betacoronavirus 1

,AY585228,JN129835

2,NC_0051

,JN129834,AY903460

47,NC_003

045

Human cosavirus A2
NC_012800
vertebrates
1
Picornaviridae,Cosavirus,Cosavirus A
—
FJ438903

Human cosavirus B
NC_012801
vertebrates
1
Picornaviridae,Cosavirus,Human cosavirus B
—
FJ438907

Human cosavirus D
NC_012802
vertebrates
1
Picornaviridae,Cosavirus,Human cosavirus D
—
FJ438908

Human cosavirus E
NC_012798
vertebrates
1
Picornaviridae,Cosavirus,Human cosavirus E
—
FJ555055

Human cyclovirus
NC_021568
vertebrates
1
Circoviridae,Human cyclovirus VS5700009
—
KC771281

VS5700009

Human enteric coronavirus
NC_010327
vertebrates
1
Coronaviridae,Betacoronavirus,Betacoronavir
—
FJ415324

4408
,NC_00773

us 1

2,NC_0051

47,NC_003

045

Human erythrovirus V9
NC_004295
vertebrates
1
Parvoviridae,Erythrovirus,Human erythrovirus
—
AJ249437

V9

Human foamy virus
NC_001364
vertebrates
2
Retroviridae,Spumavirus,Simian foamy virus
—
Y07724,Y07725

Human gyrovirus type 1
NC_015630
vertebrates
1
Circoviridae,Gyrovirus,Human gyrovirus type
—
FR823283

1

Human herpesvirus 6A
NC_001664
vertebrates
2
Herpesviridae,Roseolovirus,Human
—
KC465951,X83413

herpesvirus 6A

Human herpesvirus 6B
NC_000898
vertebrates
2
Herpesviridae,Roseolovirus,Human
—
AB021506,AF157706

herpesvirus 6B

Human papillomavirus
NC_001457
vertebrates
1
Papillomaviridae,Gammapapillomavirus,Gam
—
JX413107

mapapillomavirus 1

Human papillomavirus
NC_012485
vertebrates
1
Papillomaviridae,Gammapapillomavirus,Gam
—
JX413110

mapapillomavirus 7

Human papillomavirus
NC_012486
vertebrates
1
Papillomaviridae,Gammapapillomavirus,Gam
—
JX413106

mapapillomavirus 8

Human papillomavirus
NC_014955
vertebrates
1
Papillomaviridae,Gammapapillomavirus,Human
—
JX444072

papillomavirus 132-like viruses

Human papillomavirus-1
NC_001356
vertebrates
1
Papillomaviridae,Mupapillomavirus,Mupapillo
—
V01116

mavirus 1

Human papillomavirus-18
NC_001357
vertebrates
1
Papillomaviridae,Alphapapillomavirus,Alphapa
—
XQ5015

pillomavirus 7

Human papillomavirus-2
NC_001352
vertebrates
1
Papillomaviridae,Alphapapillomavirus,Alphapa
—
X55964

pillomavirus 4

Human papillomavirus-54
NC_001676
vertebrates
1
Papillomaviridae,Alphapapillomavirus,Alphapa
—
AF436129

pillomavirus 13

Human papillomavirus-72
NC_001694
vertebrates
1
Papillomaviridae,Alphapapillomavirus,Alphapa
—
X94164

pillomavirus 3

Human papillomavirus-81
NC_001694
vertebrates
1
Papillomaviridae,Alphapapillomavirus,Alphapa
—
AJ620209

pillomavirus 3

Human papillomavirus-83
NC_001694
vertebrates
1
Papillomaviridae,Alphapapillomavirus,Alphapa
—
AF151983

pillomavirus 3

Human papillomavirus-
NC_001694
vertebrates
1
Papillomaviridae,Alphapapillomavirus,Alphapa
—
AY395706

cand62

pillomavirus 3

Human papillomavirus-
NC_001357
vertebrates
1
Papillomaviridae,Alphapapillomavirus,Alphapa
—
AF131950

cand85

pillomavirus 7

Human papillomavirus-
NC_001694
vertebrates
1
Papillomaviridae,Alphapapillomavirus,Alphapa
—
AF349909

cand86

pillomavirus 3

Human papillomavirus-
NC_001694
vertebrates
1
Papillomaviridae,Alphapapillomavirus,Alphapa
—
AJ400628

cand87

pillomavirus 3

Human papillomavirus-
NC_001694
vertebrates
1
Papillomaviridae,Alphapapillomavirus,Alphapa
—
AF436128

cand89

pillomavirus 3

Human papillomavirus-
NC_001595
vertebrates
1
Papillomaviridae,Alphapapillomavirus,Alphapa
—
AF419318

cand91

pillomavirus 8

Human papillomavirus 109
NC_012485
vertebrates
1
Papillomaviridae,Gammapapillomavirus,Gam
—
EU541441

mapapillomavirus 7

Human papillomavirus 112
NC_012486
vertebrates
1
Papillomaviridae,Gammapapillomavirus,Gam
—
EU541442

mapapillomavirus 8

Human papillomavirus 116
NC_013035
vertebrates
1
Papillomaviridae,Gammapapillomavirus,Gam
—
FJ804072

mapapillomavirus 9

Human papillomavirus 121
NC_014185
vertebrates
1
Papillomaviridae,Gammapapillomavirus,Gam
—
GQ845443

mapapillomavirus 10

Human papillomavirus 54
NC_001676
vertebrates
1
Papillomaviridae,Alphapapillomavirus,Alphapa
—
U37488

pillomavirus 13

Human papillomavirus 61
NC_001694
vertebrates
1
Papillomaviridae,Alphapapillomavirus,Alphapa
—
U31793

pillomavirus 3

Human papillomavirus
NC_001576
vertebrates
1
Papillomaviridae,Alphapapillomavirus,Alphapa
—
FN547152

SIBX9

pillomavirus 2

Human papillomavirus type
NC_001576
vertebrates
1
Papillomaviridae,Alphapapillomavirus,Alphapa
—
X74465

10

pillomavirus 2

Human papillomavirus type
NC_001694
vertebrates
1
Papillomaviridae,Alphapapillomavirus,Alphapa
—
DQ080083

102

pillomavirus 3

Human papillomavirus type
NC_004104
vertebrates
1
Papillomaviridae,Alphapapillomavirus,Alphapa
—
DQ080082

106

pillomavirus 14

Human papillomavirus type
NC_012213
vertebrates
1
Papillomaviridae,Gammapapillomavirus,Gam
—
FM212639

108
,NC_00818

mapapillomavirus 6

8,NC_0081

89

Human papillomavirus type
NC_001355
vertebrates
49
Papillomaviridae,Alphapapillomavirus,Alphapa
—
FN907959,FN907964

11

pillomavirus 10

,HE574703,FN87002

1,HE611271,HE6112

63,HE611259,HE611

273,HE962365,HE61

1264,JN644142,FN87

0022,HE611267,JQ7

73412,EU918768,HE

611260,HE962023,H

E574704,HE611268,

HE962366,FN907963

,M14119,JQ773409,H

E574701,FN907961,J

N644141,FN907957,

FN907960,HE962024

,HE611270,JQ77341

1,FR872717,HE6112

66,HE611274,HE574

705,JQ773410,HE61

1272,HE611269,HE9

62368,HE611265,HE

611258,FN907958,H

E611261,JQ773408,

HE962367,HE611262

,FN907962,HE57470

2,HE962025

Human papillomavirus type
NC_001694
vertebrates
1
Papillomaviridae,Alphapapillomavirus,Alphapa
—
GQ244463

114

pillomavirus 3

Human papillomavirus type
NC_001576
vertebrates
1
Papillomaviridae,Alphapapillomavirus,Alphapa
—
GQ246950

117

Human papillomavirus type
NC_012486
vertebrates
1
pillomavirus 2
—
GQ845441

119

mapapillomavirus 8

Human papillomavirus type
NC_012485
vertebrates
1
Papillomaviridae,Gammapapillomavirus,Gam
—
GQ845445

123

mapapillomavirus 7

Human papillomavirus type
NC_014952
vertebrates
1
Papillomaviridae,Gammapapillomavirus,Human
—
GU225708

128

n papillomavirus type 128

Human papillomavirus type
NC_014953
vertebrates
1
Papillomaviridae,Gammapapillomavirus,Human
—
GU233853

129

n papillomavirus type 129

Human papillomavirus type
NC_001355
vertebrates
2
Papillomaviridae,Alphapapillomavirus,Alphapa
—
X62843,DQ344807

13

pillomavirus 10

Human papillomavirus type
NC_014185
vertebrates
1
Papillomaviridae,Gammapapillomavirus,Gam
—
GU117630

130

mapapillomavirus 10

Human papillomavirus type
NC_014954
vertebrates
1
Papillomaviridae,Gammapapillomavirus,Human
—
GU117631

131

papillomavirus type 131

Human papillomavirus type
NC_014955
vertebrates
1
Papillomaviridae,Gammapapillomavirus,Human
—
GU117632

132

papillomavirus 132-like viruses

Human papillomavirus type
NC_014185
vertebrates
1
Papillomaviridae,Gammapapillomavirus,Gam
—
GU117633

133

mapapillomavirus 10

Human papillomavirus type
NC_014956
vertebrates
1
Papillomaviridae,Gammapapillomavirus,Human
—
GU117634

134

papillomavirus type 134

Human papillomavirus type
NC_014955
vertebrates
1
Papillomaviridae,Gammapapillomavirus,Human
—
GU129016

148

papillomavirus 132-like viruses

Human papillomavirus type
NC_012485
vertebrates
1
Papillomaviridae,Gammapapillomavirus,Gam
—
GU117629

149

mapapillomavirus 7

Human papillomavirus type
NC_001526
vertebrates
119
Papillomaviridae,Alphapapillomavirus,Alphapa
—
HQ644258,HQ64425

16

pillomavirus 9

9,HQ644243,AB8186

87,JQ004097,HQ644

262,HQ644298,FJ610

149,HQ644249,FJ610

152,HQ644264,AB88

9490,HQ644263,AF5

36179,HQ644283,HQ

644292,HQ644261,H

0644273,AY686580,

HQ644296,JQ004096

,AB818688,AB81869

0,JQ004094,AF47250

9,FJ610146,JN56530

2,HQ644239,AB8894

92,HQ644240,HQ644

250,HQ644286,HQ64

4269,HQ644278,HQ6

44280,HQ644288,FJ6

10151,HQ644294,HQ

644248,HQ644241,H

0644238,HQ644236,

HQ644265,HQ64428

7,HQ644268,HQ6442

99,AF402678,AY6865

81,FJ610147,HQ6442

53,AF534061,HQ644

254,HM057182,HQ64

4293,FJ610150,HQ64

4284,HQ644260,HQ6

44242,JQ004093,HQ

644291,FJQ06723,AB

889489,JQ004095,H

0644276,HQ644247,

HQ644277,HQ64424

4,HQ644281,HQ6442

79,HQ644275,AF536

180,JQ004099,JQ067

944,HQ644289,FJ610

148,HQ644234,JN56

5303,AB889491,HQ6

44257,HQ644255,AB

889494,AY686579,H

0644272,AB818689,

AY686582,HQ644245

,AF472508,HQ64428

5,AF125673,HQ6442

70,HQ644295,HQ644

290,HQ644266,HQ64

4252,HQ644251,HQ6

44267,AB818693,JQO

67943,HQ644271,HQ

644237,AB889488,H

0644256,HQ644235,

JQ004092,HQ644246

,JQ004098,AB889493

,U89348,HQ644282,A

B818692,AX800450,

HQ644274,AY686583

,K02718,AY686584,E

U918764,AB818691,

EU118173,HQ644297

Human papillomavirus type
NC_022892
vertebrates
1
Papillomaviridae,Gammapapillomavirus,Huma
—
KC862318

167

n papillomavirus type 167

Human papillomavirus type
NC_012486
vertebrates
1
Papillomaviridae,Gammapapillomavirus,Gam
—
KC862317

168

mapapillomavirus 8

Human papillomavirus type
NC_001357
vertebrates
46
Papillomaviridae,Alphapapillomavirus,Alphapa
—
GQ180792,EF202155

18

pillomavirus 7

,EF202149,EF202148

,KC470211,KC47021

6,EF202150,KC4702

30,EF202153,GQ180

788,KC470214,GQ18

0786,KC470221,KC4

70218,KC470228,GQ

180784,KC470227,K

C470229,KC470226,

KC470217,KC470213

,GQ180790,KC47020

9,GQ180791,EF2021

43,EF202145,GQ180

789,KC470222,KC47

0215,KC470220,EF2

02152,EF202154,AY2

62282,EF202151,KC

470225,GQ180787,E

F202147,GQ180785,

KC470212,KC470219

,KC470210,EF20214

4,KC470223,EF2021

46,KC470224,KC470

208

Human papillomavirus type
NC_001356
vertebrates
1
Papillomaviridae,Mupapillomavirus,Mupapillo
—
U06714

1a

mavirus 1

Human papillomavirus type
NC_001352
vertebrates
4
Papillomaviridae,Alphapapillomavirus,Alphapa
—
EF362755,EF362754,

2

pillomavirus 4

EF117891,EF117890

Human papillomavirus type
NC_001583
vertebrates
1
Papillomaviridae,Alphapapillomavirus,Alphapa
—
X74472

26

pillomavirus 5

Human papillomavirus type
NC_001352
vertebrates
1
Papillomaviridae,Alphapapillomavirus,Alphapa
—
X74473

27

pillomavirus 4

Human papillomavirus type
NC_001352
vertebrates
1
Papillomaviridae,Alphapapillomavirus,Alphapa
—
AB211993

27b

pillomavirus 4

Human papillomavirus type
NC_001576
vertebrates
1
Papillomaviridae,Alphapapillomavirus,Alphapa
—
U31783

28

pillomavirus 2

Human papillomavirus type
NC_001576
vertebrates
1
Papillomaviridae,Alphapapillomavirus,Alphapa
—
U31784

29

pillomavirus 2

Human papillomavirus type
NC_001576
vertebrates
1
Papillomaviridae,Alphapapillomavirus,Alphapa
—
X74462

3

pillomavirus 2

Human papillomavirus type
NC_001593
vertebrates
1
Papillomaviridae,Alphapapillomavirus,Alphapa
—
X74474

30

pillomavirus 6

Human papillomavirus type
NC_001526
vertebrates
23
Papillomaviridae,Alphapapillomavirus,Alphapa
—
JQ4353,HQ537667,H

31

pillomavirus 9

0537678,HQ537674,

HQ537669,HQ53766

8,HQ537679,HQ5376

70,HQ537671,HQ537

681,HQ537673,HQ53

7687,HQ537666,HQ5

37677,HQ537685,HQ

537682,HQ537683,H

0537680,HQ537672,

HQ537676,HQ53767

5,HQ537684,HQ5376

86

Human papillomavirus type
NC_001586
vertebrates
1
Papillomaviridae,Alphapapillomavirus,Alphapa
—
X74475

32

pillomavirus 1

Human papillomavirus type
NC_001526
vertebrates
23
Papillomaviridae,Alphapapillomavirus,Alphapa
—
HQ537706,HQ53770

33

pillomavirus 9

2,HQ537701,HQ5376

98,M12732,HQ53769

4,HQ537696,HQ5377

07,HQ537692,HQ537

688,HQ537697,HQ53

7689,HQ537703,EU9

18766,HQ537693,HQ

537700,HQ537704,H

0537690,HQ537691,

HQ537695,HQ53769

9,HQ537705,A12360

Human papillomavirus type
NC_001587
vertebrates
1
Papillomaviridae,Alphapapillomavirus,Alphapa
—
X74476

34

pillomavirus 11

Human papillomavirus type
NC_001526
vertebrates
28
Papillomaviridae,Alphapapillomavirus,Alphapa
—
HQ537725,HQ53770

35

pillomavirus 9

8,HQ537715,HQ5377

30,HQ537711,HQ537

726,JX129488,HQ53

7720,HQ537718,HQ5

37713,HQ537717,HQ

537729, HQ537723,H

0537714, HQ537722,

M74117,HQ537710,H

0537716, HQ537719,

JX129486,HQ537728

,HQ537721 ,HQ53771

2,HQ537727,HQ5377

09,HQ537724,JX129

487,JX129485

Human papillomavirus type
NC_001526
vertebrates
1
Papillomaviridae,Alphapapillomavirus,Alphapa
—
X74477

35H

pillomavirus 9

Human papillomavirus type
NC_001357
vertebrates
20
Papillomaviridae,Alphapapillomavirus,Alphapa
—
KC470243,KC470238

39

pillomavirus 7

,KC470239,KC47024

0,KC470247,KC4702

31,KC470241,KC470

236,M62849,KC4702

42,KC470232,KC470

244,KC470246,KC47

0237,KC470235,KC4

70249,KC470234,KC

470245,KC470248,K

C470233

Human papillomavirus type
NC_001457
vertebrates
1
Papillomaviridae,Gammapapillomavirus,Gam
—
X70827

4

mapapillomavirus 1

Human papillomavirus type
NC_001595
vertebrates
1
Papillomaviridae,Alphapapillomavirus,Alphapa
—
X74478

40

pillomavirus 8

Human papillomavirus type
NC_001354
vertebrates
1
Papillomaviridae,Nupapillomavirus,Nupapillom
—
X56147

41

avirus 1

Human papillomavirus type
NC_001586
vertebrates
3
Papillomaviridae,Alphapapillomavirus,Alphapa
—
GQ472847,A28090,M

42

pillomavirus 1

73236

Human papillomavirus type
NC_001595
vertebrates
1
Papillomaviridae,Alphapapillomavirus,Alphapa
—
AJ620205

43

pillomavirus 8

Human papillomavirus type
NC_001355
vertebrates
1
Papillomaviridae,Alphapapillomavirus,Alphapa
—
U31788

44

pillomavirus 10

Human papillomavirus type
NC_001357
vertebrates
24
Papillomaviridae,Alphapapillomavirus,Alphapa
—
EF202158,EF202157,

45

pillomavirus 7

KC470251,EF202165

,EF202162,KC47025

5,EF202167,EF20216

1,KC470252,KC4702

50,X74479,EF202163

,KC470256,EF20216

6,EF202160,KC4702

59,KC470258,EF202

156,KC470253,KC47

0260,KC470257,EF2

02159,EF202164,KC

470254

Human papillomavirus type
NC_001690
vertebrates
1
Papillomaviridae,Gammapapillomavirus,Gam
—
U31789

48

mapapillomavirus 2

Human papillomavirus type
NC_001691
vertebrates
1
Papillomaviridae,Gammapapillomavirus,Gam
—
U31790

50

mapapillomavirus 3

Human papillomavirus type
NC_001583
vertebrates
1
Papillomaviridae,Alphapapillomavirus,Alphapa
—
M62877

51

pillomavirus 5

Human papillomavirus type
NC_001526
vertebrates
26
Papillomaviridae,Alphapapillomavirus,Alphapa
—
HQ537751,HQ53773

52

pillomavirus 9

6,HQ537734,HQ5377

42,HQ537746,AB819

274,HQ537732,HQ53

7745,AB819273,HQ5

37738,HQ537743,AB

819272,HQ537733,H

0537740,GQ472848,

HQ537750,HQ53774

7,HQ537735,HQ5377

41,HQ537749,HQ537

739,HQ537737,X744

81,HQ537744,HQ537

731,HQ537748

Human papillomavirus type
NC_001593
vertebrates
16
Papillomaviridae,Alphapapillomavirus,Alphapa
—
EF546474,EF546479,

53

pillomavirus 6

EF546469,EF546470,

X74482,EF546478,E

F546480,EF546473,E

F546482,EF546475,E

F546472,EF546481,E

F546471,EF546477,

GQ472849,EF546476

Human papillomavirus type
NC_001355
vertebrates
1
Papillomaviridae,Alphapapillomavirus,Alphapa
—
U31791

55

pillomavirus 10

Human papillomavirus type
NC_001593
vertebrates
7
Papillomaviridae,Alphapapillomavirus,Alphapa
—
EF177178,EF177181,

56

pillomavirus 6

EF177177,EF177179,

X74483,EF177176, E

F177180

Human papillomavirus type
NC_001352
vertebrates
1
Papillomaviridae,Alphapapillomavirus,Alphapa
—
X55965

57

pillomavirus 4

Human papillomavirus type
NC_001352
vertebrates
1
Papillomaviridae,Alphapapillomavirus,Alphapa
—
U37537

57b

pillomavirus 4

Human papillomavirus type
NC_001352
vertebrates
1
Papillomaviridae,Alphapapillomavirus,Alphapa
—
AB361563

57c

pillomavirus 4

Human papillomavirus type
NC_001526
vertebrates
45
Papillomaviridae,Alphapapillomavirus,Alphapa
—
KC860271,HQ537758

58

pillomavirus 9

,HQ537757,EU91876

5,AB819278,HQ5377

53,FJ385267,HQ5377

63,HQ537775,HQ537

769,FJ385261,FJ385

265,GQ472850,HQ53

7768,AB819279,HQ5

37771,HQ537755,HQ

537760,HQ537762,D

90400,HQ537770,AB

819276,FJ385268,HQ

537759,FJ385266,KC

860269,HQ537754,FJ

385262,AB819277,H

0537777,HQ537766,

HQ537765,HQ53776

4,HQ537761,AB8192

75,HQ537767,FJ3852

63,HQ537756,HQ537

752,FJ385264,HQ537

776,HQ537773,HQ53

7774,HQ537772,KC8

60270

Human papillomavirus type
NC_001357
vertebrates
8
Papillomaviridae,Alphapapillomavirus,Alphapa
—
KC470262,KC470261

59

pillomavirus 7

,X77858,KC470266,K

C470265,KC470263,

KC470264,EU918767

Human papillomavirus type
NC_001355
vertebrates
168
Papillomaviridae,Alphapapillomavirus,Alphapa
—
HG793909,HE962032

6

pillomavirus 10

,HG793933,HG79391

7,HG793935,HG7938

81,HG793851,HG793

906,JN252321,HG79

3918,HG793900,HG7

93875,HG793847,HG

793852,HG793908,H

G793868,HG793878,

HG793890,HG79383

9,FR751329,HG7938

26,HG793843,HG793

821,FR751324,JN252

320,HG793874,HG79

3856,HG793925,HG7

93937,HG793840,HG

793849,HG793894,H

G793882,HG793866,

HG793896,HG79388

6,HG793865,HG7938

69,FR751320,HG793

844,HG793905,FR75

1322,HE962028,HG7

93902,FR751325,HG

793885,HG793887,H

G793815,HG793888,

HG793841,HG79385

8,HG793860,HG7939

29,HG793926,HG793

829,FR751328,HG79

3870,HG793863,HG7

93919,HG793811,HG

793897,HG793936,H

G793838,HG793895,

FR751323,HG793810

,HG793879,HG79385

3,JN252318,HG7939

27,HG793912,HG793

922,HG793837,HG79

3824,FR751331,HG7

93848,HG793873,HG

793939,JN252323,H

G793842,HG793931,

JN252319,HG793823

,HG793889,HG79381

6,FR751327,AF09293

2,HG793827,FR7513

26,HG793845,HG793

884,HG793817,HG79

3924,HG793813,HG7

93859,HG793893,HG

793830,JN252314,H

G793836,FR751336,

HG793818,HG79392

3,HG793877,HG7939

13,HG793862,HG793

901,HG793892,HG79

3911,HE962026,FR7

51337,HG793861,HG

793910,HG793828,H

G793867,HG793832,

HG793857,HG79393

2,HG793903,HG7939

30,FR751338,HG793

864,HG793822,HG79

3914,HG793898,HG7

93876,HG793920,HE

962029,HG793814,F

R751332,JN252322,

HG793871,FR751335

,HG793928,HG79383

4,JN252317,HG7938

33,HG793915,HG793

835,FR751334,HG79

3916,HG793921,HG7

93904,HG793872,JN

252315,HG793812,H

E962031,HE962027,

HG793846,HG79390

7,HG793934,HG7938

55,HG793831,HE962

030,HG793880,FR75

1321,HG793891,HG7

93899,HG793938,FR

751330,HG793820,H

G793809,JN252316,

HG793819,HG79388

3,HG793850,FR7513

33,HG793854,HG793

825

Human papillomavirus type
NC_001693
vertebrates
1
Papillomaviridae,Gammapapillomavirus,Gam
—
U31792

60

mapapillomavirus 4

Human papillomavirus type
NC_001458
vertebrates
1
Papillomaviridae,Mupapillomavirus,Mupapillo
—
X70828

63

mavirus 2

Human papillomavirus type
NC_001457
vertebrates
1
Papillomaviridae,Gammapapillomavirus,Gam
—
X70829

65

mapapillomavirus 1

Human papillomavirus type
NC_001593
vertebrates
11
Papillomaviridae,Alphapapillomavirus,Alphapa
—
EF177186,U31794,E

66

pillomavirus 6

F177184,EF177188,E

F177185,EF177183,E

F177191,EF177187,E

F177182,EF177189,E

F177190

Human papillomavirus type
NC_001526
vertebrates
8
Papillomaviridae,Alphapapillomavirus,Alphapa
—
HQ537781,HQ53778

67

pillomavirus 9

2,HQ537778,HQ5377

84,HQ537780,HQ537

783,HQ537779,D212

08

Human papillomavirus type
NC_001357
vertebrates
19
Papillomaviridae,Alphapapillomavirus,Alphapa
—
KC470277,KC470271

68

pillomavirus 7

,KC470276,EU91876

9,KC470270,KC4702

82,KC470274,KC470

278,KC470267,KC47

0275,KC470272,KC4

70279,KC470268,KC

470273,KC470269,K

C470283,GQ472851,

KC470281,KC470280

Human papillomavirus type
NC_001357
vertebrates
1
Papillomaviridae,Alphapapillomavirus,Alphapa
—
DQ080079

68a

pillomavirus 7

Human papillomavirus type
NC_001357
vertebrates
1
Papillomaviridae,Alphapapillomavirus,Alphapa
—
FR751039

68b

pillomavirus 7

Human papillomavirus type
NC_001583
vertebrates
1
Papillomaviridae,Alphapapillomavirus,Alphapa
—
AB027020

69

pillomavirus 5

Human papillomavirus type
NC_001355
vertebrates
1
Papillomaviridae,Alphapapillomavirus,Alphapa
—
L41216

6a

pillomavirus 10

Human papillomavirus type
NC_001355
vertebrates
1
Papillomaviridae,Alphapapillomavirus,Alphapa
—
XQ0203

6b

pillomavirus 10

Human papillomavirus type
NC_001595
vertebrates
1
Papillomaviridae,Alphapapillomavirus,Alphapa
—
X74463

7

pillomavirus 8

Human papillomavirus type
NC_001357
vertebrates
9
Papillomaviridae,Alphapapillomavirus,Alphapa
—
KC470289,KC470290

70

pillomavirus 7

,KC470291,U21941,K

C470288,KC470287,

KC470286,KC470284

,KC470285

Human papillomavirus type
NC_004104
vertebrates
5
Papillomaviridae,Alphapapillomavirus,Alphapa
—
AB040456,AY330623

71

pillomavirus 14

,AY330620,AY33062

2,AY330621

Human papillomavirus type
NC_001587
vertebrates
1
Papillomaviridae,Alphapapillomavirus,Alphapa
—
X94165

73

pillomavirus 11

Human papillomavirus type
NC_001355
vertebrates
1
Papillomaviridae,Alphapapillomavirus,Alphapa
—
AF436130

74

pillomavirus 10

Human papillomavirus type
NC_001576
vertebrates
1
Papillomaviridae,Alphapapillomavirus,Alphapa
—
Y15175

77

pillomavirus 2

Human papillomavirus type
NC_001583
vertebrates
2
Papillomaviridae,Alphapapillomavirus,Alphapa
—
AB027021,AF293961

82

pillomavirus 5

Human papillomavirus type
NC_001694
vertebrates
1
Papillomaviridae,Alphapapillomavirus,Alphapa
—
AF293960

84

pillomavirus 3

Human papillomavirus type
NC_010329
vertebrates
1
Papillomaviridae,Gammapapillomavirus,Gam
—
EF467176

88

mapapillomavirus 5

Human papillomavirus type
NC_004104
vertebrates
2
Papillomaviridae,Alphapapillomavirus,Alphapa
—
AY057438,AB542808

90

pillomavirus 14

Human papillomavirus type
NC_001576
vertebrates
3
Papillomaviridae,Alphapapillomavirus,Alphapa
—
AB201226,GU117628

94

pillomavirus 2

,AJ620211

Human papillomavirus type
NC_001457
vertebrates
1
Papillomaviridae,Gammapapillomavirus,Gam
—
AJ620210

95

mapapillomavirus 1

Human papillomavirus type
NC_001357
vertebrates
3
Papillomaviridae,Alphapapillomavirus,Alphapa
—
DQ080080,EF202168

97

pillomavirus 7

,EF436229

Human papillomavirus type
NC_001576
vertebrates
1
Papillomaviridae,Alphapapillomavirus,Alphapa
—
KC138720

XS2

pillomavirus 2

Human parechovirus
NC_001897
vertebrates
3
Picornaviridae, Parechovi rus,Human
—
EU022171,KJ152442,

parechovirus

AJQ05695

Human parechovirus 1
NC_001897
vertebrates
18
Picornaviridae, Parechovi rus,Human
—
EF051629,S45208,G

parechovirus

0183021,GQ183035,

GQ183023,FJ840477

,GQ183019,JX44135

5,GQ183022, FM 1785

58,KC769584,GQ183

018,GQ183024,JX57

5746,GQ183020,GQ1

83025,L02971 ,GQ18

3034

Human parechovirus 2
NC_001897
vertebrates
1
Picornaviridae, Parechovi rus,Human
—
AF055846

parechovirus

Human parechovirus 3
NC_001897
vertebrates
13
Picornaviridae, Parechovi rus,Human
—
GQ183031,AJ889918

parechovirus

,GQ183026,JX82660

7,GQ183027,AB6680

,29,GQ183032,GQ183

028,JX682576,AB084

913,GQ183030,GQ18

3033,GQ183029

Human parechovirus 4
NC_001897
vertebrates
3
Picornaviridae, Parechovi rus,Human
—
DQ315670,AM23575

parechovirus

0,AB433629

Human parechovirus 5
NC_001897
vertebrates
2
Picornaviridae, Parechovi rus,Human
—
AM235749,JXQ50181

parechovirus

Human parechovirus 6
NC_001897
vertebrates
4
Picornaviridae, Parechovi rus,Human
—
AB252582,EU077518

parechovirus

,FJ888592,EU024629

Human parechovirus 7
NC_001897
vertebrates
1
Picornaviridae, Parechovi rus,Human
—
EU556224

parechovirus

Human parechovirus 8
NC_001897
vertebrates
1
Picornaviridae, Parechovi rus,Human
—
EU716175

parechovirus

Human parechovirus type 1
NC_001897
vertebrates
1
Picornaviridae, Parechovirus,Human
—
FM242866

PicoBank/HPeV1/a

parechovirus

Human parvovirus 4
NC_007018
vertebrates
7
Parvoviridae,Parvovirus,Human parvovirus 4
—
DQ873387,DQ87338

8,EU175856,EU1758

,55,AY622943,EU874

248,DQ873389

Human polyomavirus 10
NC_018102
vertebrates
1
Polyomaviridae,Polyomavirus,MW
—
JX262162

polyomavirus

Human polyomavirus 12
NC_020890
vertebrates
1
Polyom avi ridae, Polyomavirus,Human
—
JX308829

polyomavirus 12

Human polyomavirus 9
NC_015150
vertebrates
2
Polyom avi ridae, Polyom avi rus,Human
—
KC831440,HQ696595

polyomavirus 9

Human rhinovirus C
NC_009996
vertebrates
16
Picornaviridae,Enterovirus,Rhinovirus C
—
JF317015,JN798567,

JF317014,JF317016,

,JN205461,JX291115,

GU219984,EU840952

,JF317013,JF317017,

JQ245968,EF582386,

JN837688,EF582385,

DQ875932,EF582387

Human rhinovirus C strain
NC_009996
vertebrates
1
Picornaviridae,Enterovirus,Rhinovirus C
—
GQ323774

QCE

Human rhinovirus C3
NC_009996
vertebrates
1
Picornaviridae,Enterovirus,Rhinovirus C
—
EF186077

Human rhinovirus C35
NC_009996
vertebrates
1
Picornaviridae,Enterovirus,Rhinovirus C
—
JF436925

Human spumaretrovirus
NC_001364
vertebrates
1
Retroviridae,Spumavirus,Simian foamy virus
—
U21247

Ictalund herpesvirus 1
NC_001493
vertebrates
1
Alloherpesviridae,Ictalurivirus,Ictalurid
—
M75136

herpesvirus 1

Infectious bronchitis virus
NC_010800
vertebrates
71
Coronaviridae,Gammacoronavirus,Avian
—
DQ288927,DQ00133

,NC_00145

coronavirus

9,AY338732,GU3933

1

35,GU393333,FJ9047

17,FJ904723,JQ9776

,98,FJ904720,GU3933

37,EU714028,FJ9047

16,HM245924,JF274

479,GQ504720,GU39

3332,GU393334,FJ90

4721,FJ904713,JX19

5175,JX195177,JF82

8981,JF893452,AY51

4485,GQ504723,FJ8

88351,JX195178,GU

393331,GU393338,FJ

807652,GQ504722,E

U526388,GQ504721,

DQ646405,JX195176

,FJ904722,KF574761

,KF377577,EU63785

4,JF330899,JX89790

0,DQ834384,AY6415

76,DQ001338,AY851

295,EU817497,GQ50

4725,KC013541,EU4

18975,HM245923,FJ

904719,JF330898,KC

136209,JF828980,AY

319651,JQ977697,E

U418976,FJ904714,G

U393336,KC506155,

EU714029,KC008600

,KF411040,FJ904715

,HQ850618,KF41104

1,KC119407,FJ90471

8,AY692454,GQ5047

24,HQ848267

Infectious bronchitis virus
NC_010800
vertebrates
1
Coronaviridae,Gammacoronavirus,Avian
—
FN430414

ITA/90254/2005
,NC_00145

coronavirus

1

Infectious bronchitis virus
NC_010800
vertebrates
1
Coronaviridae,Gammacoronavirus,Avian
—
FN430415

NGA/A116E7/2006
,NC_00145

coronavirus

1

Infectious bursal disease
NC_004178
vertebrates
93
Birnaviridae,Avibirnavirus, Infectious bursal
seg. A
EF418034,AF051837,

virus

disease virus

GQ166970,DQ40324

8,AF533670,AF09217

1,AF165150,JQ41101

2,EU162089,JF90770

2,EF418036,DQ0499,

AF240686,GQ451330

,EU595669,JX134483

,DQ0867,AJ427340,A

Y598356,EU595670,

AJ310185,EF418035,

AY099456,AM167550

,AY462026,AF140705

,EU595667,EU59566

8,AY319768,AF36277

6,EU184687,FJ69513

8,AY134874,Z21971,

X84034,AY323952,A

F321054,AF527039,E

U595672,DQ906921,

D83985,EF646853,D

00869,DQ927040,AY

444873,AF092943,AF

194428,EU162088,AJ

879932,AY368653,D

0088175,AY665672,

XQ3993,AF165151,A

Y918950,AF109154,E

U595671,JX134485,

M97346,AF508176,A

Y918948,EF517528,A

F247006,AF499929,A

F362773,AF443294,D

0927042,AF322444,J

0403646,FJ695139,J

F811920,L42284,AF3

62747,AF133904,AF3

21055,AF362771,AY0

29166,AF321056,DQ

778035,EU184689,A

F165149,JN585293,D

49706,AJ318896,EF4

18033,M66722,AY46

2027,EU184685,U30

818,JF907703,X9276

0,AM111353,GQ1669

72

Infectious bursal disease
NC_004179
vertebrates
87
Birnaviridae,Avibirnavirus,Infectious bursal
seg. B
AY598355,EU162092

virus

disease virus

,AM167551,AJ31889

7,JQ403647,AF49397

9,EU162093,AY4593

20,AY459321,AF3224

45,GQ166971,JX134

484,AY134875,U3081

9,EU162095,EU5956

75,EU595677,AF092

944,EF576658,EU16

2091,JF907704,AB36

8971,AF362748,AJ88

0090,AB368969,M19

336,AY103464,X9276

1,EU595676,AF1339

05,AF203880,EU162

094,JQ411013,GQ45

1331,AF083092,AF36

2774,X84035,U62661

,EF688065,AY654284

,AM111354,JF907705

,AF499930,AF083093

,AJ496637,D49707,A

F194429,EU595678,

AF362772,DQ906922

,EF646854,EU16209

0,AF083094,DQ6798

11,EU595674,EF517

529,U20950,AF52703

8,DQ118374,FJQ4015

9,JF811921,DQ67981

3,GQ452269,AY0994

57,DQ927041 ,DQ679

814,DQ403249,AY91

8949,EU595673,DQ6

79812,AF527040,JX1

34486,EU184690,AJ3

10186,AY705393,AY

918947,JN411134,AF

362770,AF362775,AF

240687,DQ166818,E

U184686,AY368654,

AY029165,DQ927043

, L19502,EU184688

Infectious bursal disease
NC_004178
vertebrates
1
Birnaviridae,Avibirnavirus, Infectious bursal
seg. A
X16107

virus CU-1

disease virus

Infectious hematopoietic
NC_001652
vertebrates
5
Rhabdoviridae,Novirhabdovirus, Infectious
—
GQ413939,JX649101

necrosis virus

hematopoietic necrosis virus

,X89213,L40883,HM4

61966

Infectious pancreatic
NC_001915
vertebrates
29
Birnaviridae,Aquabirnavirus,Infectious
seg. A
DQ536090,AY780919

necrosis virus

pancreatic necrosis virus

,AJ622822,AY780923

,AY780921,M18049,A

Y374435,AY379738,

AY780918,AY354519

,AY379737,DQ0701,A

Y379736,AY780922,

AY379742,DQ536091

,AY823632,AY35452

0,AY379744,AY2837

80,AF078668,AY7809

24,U56907,D26526,E

F493156,AY780920,A

Y354521,AY379735,

AY379740

Infectious pancreatic
NC_001916
vertebrates
20
Birnaviridae,Aquabirnavirus,Infectious
seg. B
AY379741,AY379739

necrosis virus

pancreatic necrosis virus

,AY780930,AY37974

3,AY823633,M58756,

AY129664,AY354522

,AY780927,AY35452

3,AY354524,M58757,

AY780929,AY780931

,AY780925,AY78092

6,AY780928,D26527,

AJ622823,AF078669

Infectious pancreatic
NC_001916
vertebrates
1
Birnaviridae,Aquabirnavirus,Infectious
seg. B
EU665685

necrosis virus-Mexico

pancreatic necrosis virus

Infectious salmon anemia
NC_006497
vertebrates
44
Orthomyxoviridae,Isavirus,Infectious salmon
seg. B
DQ022085,DQ78528

virus

anemia virus

3,DQ785275,DQ7852

86,DQ003603,DQ785

276,DQ003600,AF26

2386,EU118822,AF3

15063,DQ785278,AF

404340,DQ785281,D

0003601,AF262382,

DQ785279,AF262388

,AF262380,DQ00360

7,AF262383,AY74439

5,DQ785285,AJQ122

85,DQ785277,AF262

389,DQ058660,DQ00

3602,DQ785274,AF3

12317,Y10404,AF312

315,DQ003606,DQ78

5280,AF262384,DQO

03605,AF262381,DQ

785284,AF262387,D

0785282,DQ003604,

DQ785273,AJ242016

,AF262385,AF312316

Infectious salmon anemia
NC_006498
vertebrates
8
Orthomyxoviridae,Isavirus,Infectious salmon
seg. 7
AY044132,AJ306487,

virus

anemia virus

AF404341,AF429990,

AF328627,DQ673253

,AF429989,DQ67325

4

Infectious salmon anemia
NC_006499
vertebrates
9
Orthomyxoviridae,Isavirus,Infectious salmon
seg. 6
AF404342,JN711062,

virus

anemia virus

AF220607,JN711065,

AY059402,JN711074,

JN711093,JN711096,

JN711060

Infectious salmon anemia
NC_006500
vertebrates
38
Orthomyxoviridae,Isavirus,Infectious salmon
seg. 5
JN711056,JN711023,

virus

anemia virus

DQ465047,JN711047

,JN711040,AF429986

,JN711041,JN711021

,JN711054,DQ46504

3,JN711030,JN71102

4,JN711019,DQ4650

44,AJ277461,DQ440

507,JN711043,AF404

343,AF429988,JN711

044,DQ440508,AF42

9987,JN711053,JN71

1026,JN711055,JN71

1049,DQ465045,JN7

11045,JN711042,JN7

11050,JN711033,JN7

11046,JN711036,DQ

465046,JN711022,JN

711051,DQ440506,J

N711031

Infectious salmon anemia
NC_006501
vertebrates
25
Orthomyxoviridae,Isavirus,Infectious salmon
seg. 4
DQ785227,DQ78522

virus

anemia virus

3,DQ785221,DQ5206

00,DQ785218,DQ785

224,AY744391,DQ78

5217,HM172539,DQ7

85222,DQ520601,DQ

785229,DQ785219,D

0785228,DQ520602,

DQ520598,AF404344

DQ520597,DQ78522

5,DQ785220,DQ7852

26,EU118818,DQ785

230,AF306548,DQ52

0599

Infectious salmon anemia
NC_006502
vertebrates
92
Orthomyxoviridae,Isavirus,Infectious salmon
seg. 3
JN710910,JN710861,

virus

anemia virus

JN710908,JN710864,

JN710894,JN710866,

JN710854,JN710843,

JN710915,JN710889,

JN710839,JN710871,

JN710846,JN710904,

JN710918,JN710907,

JN710840,JN710913,

JN710881,JN710916,

JN710858,JN710853,

JN710919,JN710872,

JN710844,JN710883,

JN710903,AJ276858,

JN710887,JN710906,

JN710835,JN710842,

HM172538,JN710837

,AF404345,JN710873

,JN710914,JN710867

,JXQ70881,JN710890

,JN710905,JN710879

,JN710896,JN710841

,JN710851,JN710891

,JN710859,JN710836

,JN710885,JN710880

,JN710895,JN710878

,JN710869,JN710874

,JN710850,JN710865

,JN710870,JN710900

,JN710884,JN710882

,JN710849,JN710875

,JN710888,JN710902

,JN710886,JN710911

,JN710838,JN710857

,AF306549,JN710899

,JN710898,JN710897

,JN710921,JN710920

,JN710856,JN710912

,JN710845,JN710917

,JN710848,JN710847

,JN710901,JN710892

,JN710909,JN710876

,JN710862,JN710893

,JN710852,JN710860

,JN710868,JN710863

,JN710877,JN710855

Infectious salmon anemia
NC_006503
vertebrates
23
Orthomyxoviridae,Isavirus,Infectious salmon
seg. 2
DQ676937,DQ78520

virus

anemia virus

0,DQ785198,DQ7851

95,DQ785191,DQ785

199,DQ785194,DQ52

0596,DQ785190,HM1

72537,AJ242808,EU1

18816,DQ785189,DQ

520595, DQ785197,D

0785192,AF404346,

AJQ02475,AY744389,

DQ785202, DQ78519

6,DQ785193,DQ7852

01

Infectious salmon anemia
NC_006505
vertebrates
32
Orthomyxoviridae,Isavirus,Infectious salmon
seg. 1
DQ785181,AY860813

virus

anemia virus

,AY168787,DQ78518

8,AY860812,AY9545

28,AY373381,DQ785

183,DQ785176,DQ78

5186,AY373379,AY3

73380,DQ785175,AY

860811,DQ785185,D

0785182,AY860808,

AY373382,DQ785180

,DQ785187,AY86080

9,AY860810,AJ51440

3,DQ785179,AY7443

88,EU118815,DQ785

178,AY954527,HM17

2536,DQ785184,DQ7

85177,AY954526

Infectious spleen and
NC_003494
vertebrates
1
Indoviridae,Megalocytivirus,Infectious spleen
—
AF371960

kidney necrosis virus

and kidney necrosis virus

Jaagsiekte sheep retrovirus
NC_001494
vertebrates
6
Retroviridae,Betaretrovirus,Jaagsiekte sheep
—
AF105220,DQ838494

retrovirus

,A27950,C0964469,A

F357971,M80216

Japanese eel endothelial
NC_015123
vertebrates
1
Japanese eel endothelial cells-infecting virus
—
AB543063

cells-infecting virus

Jembrana disease virus
NC_001413
vertebrates
1
Retroviridae,Lentivirus,Bovine
—
U21603

immunodeficiency virus

Koala retrovirus
NC_021704
vertebrates
1
Retroviridae,Gammaretrovirus,Koala
—
KC779547

retrovirus

Kobuvirus pig/JY-
NC_011829
vertebrates
1
Picornaviridae,Kobuvirus,Aichivirus C
—
GU292559

2010a/CHN
,NC_01676

9

Kobuvirus sewage
NC_001918
vertebrates
1
Picornaviridae,Kobuvirus,Aichivirus A
—
JQ898342

Kathmandu

Labidocera aestiva
NC_017843
vertebrates
1
Circoviridae,Circovirus,Labidocera aestiva
—
JF912805

circovirus

circovirus

Lactate dehydrogenase-
NC_001639
vertebrates
2
Arteriviridae,Arterivirus, Lactate
—
U15146,L13298

elevating virus

dehydrogenase-elevating virus

Lagenorhynchus acutus
NC_011109
vertebrates
1
Papillomaviridae,Upsilonpapillomavirus,Upsilo
—
GU117624

papillomavirus

npapillomavirus 1

Lambdapapillomavirus 3
NC_013237
vertebrates
1
Papillomaviridae,Lambdapapillomavirus,Lamb
—
FJ492744

dapapillomavirus 3

Large yellow croaker
NC_003494
vertebrates
1
Iridoviridae,Megalocytivirus,Infectious spleen
—
AY779031

iridovirus

and kidney necrosis virus

Lelystad virus
NC_001961
vertebrates
1
Arteriviridae,Arterivirus,Porcine reproductive
—
M96262

and respiratory syndrome virus

Ljungan virus
NC_003976
vertebrates
3
Picornaviridae,Parechovirus,Ljungan virus
—
AF538689,EF202833,

AF327920

Ljungan virus strain 145SL
NC_003976
vertebrates
2
Picornaviridae,Parechovirus,Ljungan virus
—
AF327922,FJ384560

Ljungan virus strain 174F
NC_003976
vertebrates
1
Picornaviridae,Parechovirus,Ljungan virus
—
AF327921

Lulll virus
NC_004713
vertebrates
1
Parvoviridae,Parvovirus,Lulll virus
—
M81888

Lumpy skin disease virus
NC_003027
vertebrates
1
Poxviridae,Capripoxvirus,Lumpy skin disease
—
AF409138

virus

Lumpy skin disease virus
NC_003027
vertebrates
1
Poxviridae,Capripoxvirus,Lumpy skin disease
—
AF325528

NI-2490 virus

Lumpy skin disease virus
NC_003027
vertebrates
1
Poxviridae,Capripoxvirus,Lumpy skin disease
—
AF409137

NW-LW virus

Lymphocystis disease virus-
NC_005902
vertebrates
1
Iridoviridae,Lymphocystivirus,Lymphocystis
—
AY380826

isolate China

disease virus-isolate China

Lymphocystis disease virus
NC_001824
vertebrates
1
Iridoviridae,Lymphocystivirus,Lymphocystis
—
L63545

1

disease virus 1

Lynx rufus papillomavirus
NC_004765
vertebrates
1
Papillomaviridae,Lambdapapillomavirus,Lamb
—
AY904722

type 1

dapapillomavirus 1

MW polyomavirus
NC_018102
vertebrates
11
Polyomaviridae,Polyomavirus,MW
—
JQ898292,KC549591

polyomavirus

,KC549588,JQ89829

1,KC549590,KC5495

87,KC549589,KC549

593,KC549594,KC54

9592,KC549586

Macaca fascicularis
NC_001678
vertebrates
1
Papillomaviridae,Alphapapillomavirus,Alphapa
—
EU490515

papillomavirus type 10

pillomavirus 12

Macaca fascicularis
NC_001678
vertebrates
1
Papillomaviridae,Alphapapillomavirus,Alphapa
—
GQ227670

papillomavirus type 11

pillomavirus 12

Macaca fascicularis
NC_001678
vertebrates
1
Papillomaviridae,Alphapapillomavirus,Alphapa
—
EF558839

papillomavirus type 3

pillomavirus 12

Macaca fascicularis
NC_001678
vertebrates
1
Papillomaviridae,Alphapapillomavirus,Alphapa
—
EF591299

papillomavirus type 3b

pillomavirus 12

Macaca fascicularis
NC_001678
vertebrates
1
Papillomaviridae,Alphapapillomavirus,Alphapa
—
EF558841

papillomavirus type 4

pillomavirus 12

Macaca fascicularis
NC_001678
vertebrates
1
Papillomaviridae,Alphapapillomavirus,Alphapa
—
EF558843

papillomavirus types

pillomavirus 12

Macaca fascicularis
NC_001678
vertebrates
1
Papillomaviridae,Alphapapillomavirus,Alphapa
—
EF558840

papillomavirus type 6

pillomavirus 12

Macaca fascicularis
NC_001678
vertebrates
1
Papillomaviridae,Alphapapillomavirus,Alphapa
—
EF558838

papillomavirus type 7

pillomavirus 12

Macaca fascicularis
NC_001678
vertebrates
1
Papillomaviridae,Alphapapillomavirus,Alphapa
—
EF558842

papillomavirus type 8

pillomavirus 12

Macaca fascicularis
NC_001678
vertebrates
1
Papillomaviridae,Alphapapillomavirus,Alphapa
—
EU490516

papillomavirus type 9

pillomavirus 12

Macaca fascicularis
NC_019851
vertebrates
1
Polyomaviridae,Polyomavirus,Macaca
—
JX159986

polyomavirus 1

fascicularis polyomavirus 1

Macaca fuscata
NC_003401
vertebrates
3
Herpesviridae,Rhadinovirus,Macacine
—
JN885137,AY528864,

rhadinovirus

herpesvirus 5

JN885136

Macacine herpesvirus 1
NC_004812
vertebrates
1
Herpesviridae,Simplexvirus,Macacine
—
AF533768

herpesvirus 1

Macacine herpesvirus 3
NC_006150
vertebrates
3
Herpesviridae,Cytomegalovirus,Macacine
—
DQ120516,JQ795930

herpesvirus 3

,AY186194

Macacine herpesvirus 4
NC_006146
vertebrates
1
Herpesviridae,Lymphocryptovirus,Macacine
—
AY037858

herpesvirus 4

Macacine herpesvirus 5
NC_003401
vertebrates
1
Herpesviridae,Rhadinovirus,Macacine
—
AF083501

herpesvirus 5

Macaque simian foamy
NC_010819
vertebrates
2
Retroviridae,Spumavirus,Macaque simian
—
X54482,JN801175

virus

foamy virus

Magpie-robin coronavirus
NC_016993
vertebrates
1
Coronaviridae,Deltacoronavirus,Magpie-robin
—
JQ065046

HKU18

coronavirus HKU18

Mamastrovirus 10
NC_004579
vertebrates
1
Astroviridae,Mamastrovirus,Mamastrovirus 10
—
AY179509

Mamastrovirus 13
NC_002469
vertebrates
1
Astroviridae,Mamastrovirus,Mamastrovirus 13
—
Y15937

Mammalian Orthoreovirus
NC_004274
vertebrates
1
Reoviridae,Orthoreovirus,Mammalian
seg.
JQ412757

strain

orthoreovirus
L3

T3/Bat/Germany/342/08

Mammalian Orthoreovirus
NC_004275
vertebrates
1
Reoviridae,Orthoreovirus,Mammalian
seg.
JQ412756

strain

orthoreovirus
L2

T3/Bat/Germany/342/08

Mammalian Orthoreovirus
NC_004276
vertebrates
1
Reoviridae,Orthoreovirus,Mammalian
seg.
JQ412764

strain

orthoreovirus
S4

T3/Bat/Germany/342/08

Mammalian Orthoreovirus
NC_004277
vertebrates
1
Reoviridae,Orthoreovirus,Mammalian
seg.
JQ412761

strain

orthoreovirus
Si

T3/Bat/Germany/342/08

Mammalian Orthoreovirus
NC_004278
vertebrates
1
Reoviridae,Orthoreovirus,Mammalian
seg.
JQ412759

strain

orthoreovirus
M2

T3/Bat/Germany/342/08

Mammalian Orthoreovirus
NC_004279
vertebrates
1
Reoviridae,Orthoreovirus,Mammalian
seg.
JQ412762

strain

orthoreovirus
S2

T3/Bat/Germany/342/08

Mammalian Orthoreovirus
NC_004280
vertebrates
1
Reoviridae,Orthoreovirus,Mammalian
seg.
JQ412758

strain

orthoreovirus
M1

T3/Bat/Germany/342/08

Mammalian Orthoreovirus
NC_004281
vertebrates
1
Reoviridae,Orthoreovirus,Mammalian
seg.
JQ412760

strain

orthoreovirus
M3

T3/Bat/Germany/342/08

Mammalian Orthoreovirus
NC_004282
vertebrates
1
Reoviridae,Orthoreovirus,Mammalian
seg.
JQ412755

strain

orthoreovirus
L1

T3/Bat/Germany/342/08

Mammalian Orthoreovirus
NC_004283
vertebrates
1
Reoviridae,Orthoreovirus,Mammalian
seg.
JQ412763

strain

orthoreovirus
S3

T3/Bat/Germany/342/08

Mammalian Orthoreovirus
NC_013228
vertebrates
1
Reoviridae,Orthoreovirus,Mammalian
seg.
JQ412759

strain

orthoreovirus
M2

T3/Bat/Germany/342/08

Mammalian Orthoreovirus
NC_013230
vertebrates
1
Reoviridae,Orthoreovirus,Mammalian
seg.
JQ412760

strain

orthoreovirus
M3

T3/Bat/Germany/342/08

Mammalian Orthoreovirus
NC_013232
vertebrates
1
Reoviridae,Orthoreovirus,Mammalian
seg.
JQ412762

strain

orthoreovirus
S2

T3/Bat/Germany/342/08

Mammalian Orthoreovirus
NC_013234
vertebrates
1
Reoviridae,Orthoreovirus,Mammalian
seg.
JQ412764

strain

orthoreovirus
S4

T3/Bat/Germany/342/08

Mammalian orthoreovirus
NC_004274
vertebrates
2
Reoviridae,Orthoreovirus,Mammalian
seg.
EF029088,JN799428

orthoreovirus
L3

Mammalian orthoreovirus
NC_004275
vertebrates
3
Reoviridae,Orthoreovirus,Mammalian
seg.
DQ885990,HQ64277

orthoreovirus
L2
0,JN799427

Mammalian orthoreovirus
NC_004276
vertebrates
2
Reoviridae,Orthoreovirus,Mammalian
seg.
DQ396806,JN799422

orthoreovirus
S4

Mammalian orthoreovirus
NC_004277
vertebrates
3
Reoviridae,Orthoreovirus,Mammalian
seg.
DQ911244,HQ64277

orthoreovirus
Si
5,JN799419

Mammalian orthoreovirus
NC_004278
vertebrates
3
Reoviridae,Orthoreovirus,Mammalian
seg.
JN799424,HQ642772

orthoreovirus
M2,
DQ482462

Mammalian orthoreovirus
NC_004279
vertebrates
3
Reoviridae,Orthoreovirus,Mammalian
seg.
JN799420,DQ396805

orthoreovirus
S2
,HQ642776

Mammalian orthoreovirus
NC_004280
vertebrates
3
Reoviridae,Orthoreovirus,Mammalian
seg.
HQ642773,JN799423

orthoreovirus
M1,
DQ396804

Mammalian orthoreovirus
NC_004281
vertebrates
2
Reoviridae,Orthoreovirus,Mammalian
seg.
JN799425,DQ403254

orthoreovirus
M3

Mammalian orthoreovirus
NC_004282
vertebrates
3
Reoviridae,Orthoreovirus,Mammalian
seg.
JN799426,HQ642771

orthoreovirus
L1
,DQ997719

Mammalian orthoreovirus
NC_004283
vertebrates
3
Reoviridae,Orthoreovirus,Mammalian
seg.
JN799421,HQ642777

orthoreovirus
S3
,DQ411553

Mammalian orthoreovirus
NC_013228
vertebrates
3
Reoviridae,Orthoreovirus,Mammalian
seg.
JN799424,HQ642772

orthoreovirus
M2
,DQ482462

Mammalian orthoreovirus
NC_013230
vertebrates
2
Reoviridae,Orthoreovirus,Mammalian
seg.
JN799425,DQ403254

orthoreovirus
M3

Mammalian orthoreovirus
NC_013232
vertebrates
3
Reoviridae,Orthoreovirus,Mammalian
seg.
JN799420,DQ396805

orthoreovirus
S2
,HQ642776

Mammalian orthoreovirus
NC_013234
vertebrates
2
Reoviridae,Orthoreovirus,Mammalian
seg.
DQ396806,JN799422

orthoreovirus
S4

Mammalian orthoreovirus 1
NC_004274
vertebrates
1
Reoviridae,Orthoreovirus,Mammalian
seg.
AF129820

orthoreovirus
L3

Mammalian orthoreovirus 1
NC_004275
vertebrates
1
Reoviridae,Orthoreovirus,Mammalian
seg.
AF378004

orthoreovirus
L2

Mammalian orthoreovirus 1
NC_004276
vertebrates
2
Reoviridae,Orthoreovirus,Mammalian
seg.
X61586,M13139

orthoreovirus
S4

Mammalian orthoreovirus 1
NC_004277
vertebrates
8
Reoviridae,Orthoreovirus,Mammalian
seg.
AY862136,EF494445,

orthoreovirus
S1
M10260,AY862135,M

35963,M14779,AY86

2133,AY862134

Mammalian orthoreovirus 1
NC_004278
vertebrates
2
Reoviridae,Orthoreovirus,Mammalian
seg.
M19345,M19407

orthoreovirus
M2

Mammalian orthoreovirus 1
NC_004279
vertebrates
2
Reoviridae,Orthoreovirus,Mammalian
seg.
M17598,L19774

orthoreovirus
S2

Mammalian orthoreovirus 1
NC_004280
vertebrates
4
Reoviridae,Orthoreovirus,Mammalian
seg.
AY428872,X59945,A

orthoreovirus
M1
Y428870,AY428871

Mammalian orthoreovirus 1
NC_004281
vertebrates
1
Reoviridae,Orthoreovirus,Mammalian
seg.
AF174382

orthoreovirus
M3

Mammalian orthoreovirus 1
NC_004283
vertebrates
2
Reoviridae,Orthoreovirus,Mammalian
seg.
M14325,M18389

orthoreovirus
S3

Mammalian orthoreovirus 1
NC_013228
vertebrates
2
Reoviridae,Orthoreovirus,Mammalian
seg.
M19345,M19407

orthoreovirus
M2

Mammalian orthoreovirus 1
NC_013230
vertebrates
1
Reoviridae,Orthoreovirus,Mammalian
seg.
AF174382

orthoreovirus
M3

Mammalian orthoreovirus 1
NC_013232
vertebrates
2
Reoviridae,Orthoreovirus,Mammalian
seg.
M17598,L19774

orthoreovirus
S2

Mammalian orthoreovirus 1
NC_013234
vertebrates
2
Reoviridae,Orthoreovirus,Mammalian
seg.
X61586,M13139

orthoreovirus
S4

Mammalian orthoreovirus 2
NC_004274
vertebrates
3
Reoviridae,Orthoreovirus,Mammalian
seg.
AF129821,GU196308

orthoreovirus
L3
,DQ664186

Mammalian orthoreovirus 2
NC_004275
vertebrates
3
Reoviridae,Orthoreovirus,Mammalian
seg.
DQ664185,GU19630

orthoreovirus
L2
7,AF378006

Mammalian orthoreovirus 2
NC_004276
vertebrates
2
Reoviridae,Orthoreovirus,Mammalian
seg.
DQ318037,GU19631

orthoreovirus
S4
3

Mammalian orthoreovirus 2
NC_004277
vertebrates
10
Reoviridae,Orthoreovirus,Mammalian
seg.
EU049605,AY862137

orthoreovirus
S1
,EU049607,EU04960

4,EU049603,M35964,

GU196315,AY862138

,EU049606,DQ31230

1

Mammalian orthoreovirus 2
NC_004278
vertebrates
2
Reoviridae,Orthoreovirus,Mammalian
seg.
DQ664188,GU19631

orthoreovirus
M2
0

Mammalian orthoreovirus 2
NC_004279
vertebrates
2
Reoviridae,Orthoreovirus,Mammalian
seg.
GU196311,DQ66419

orthoreovirus
S2
0

Mammalian orthoreovirus 2
NC_004280
vertebrates
4
Reoviridae,Orthoreovirus,Mammalian
seg.
AY428873,DQ664187

orthoreovirus
M1
,GU196309,AY42887

4

Mammalian orthoreovirus 2
NC_004281
vertebrates
3
Reoviridae,Orthoreovirus,Mammalian
seg.
GU196314,DQ66418

orthoreovirus
M3
9,AF174383

Mammalian orthoreovirus 2
NC_004282
vertebrates
2
Reoviridae,Orthoreovirus,Mammalian
seg.
DQ664184,GU19630

orthoreovirus
L1
6

Mammalian orthoreovirus 2
NC_004283
vertebrates
3
Reoviridae,Orthoreovirus,Mammalian
seg.
GU196312,M18390,D

orthoreovirus
S3
0664191

Mammalian orthoreovirus 2
NC_013228
vertebrates
2
Reoviridae,Orthoreovirus,Mammalian
seg.
DQ664188,GU19631

orthoreovirus
M2
0

Mammalian orthoreovirus 2
NC_013230
vertebrates
3
Reoviridae,Orthoreovirus,Mammalian
seg.
GU196314,DQ66418

orthoreovirus
M3
9,AF174383

Mammalian orthoreovirus 2
NC_013232
vertebrates
2
Reoviridae,Orthoreovirus,Mammalian
seg.
GU196311,DQ66419

orthoreovirus
S2
0

Mammalian orthoreovirus 2
NC_013234
vertebrates
2
Reoviridae,Orthoreovirus,Mammalian
seg.
DQ318037,GU19631

orthoreovirus
S4
3

Mammalian orthoreovirus 2
NC_004276
vertebrates
1
Reoviridae,Orthoreovirus,Mammalian
seg.
X60066

D5/Jones orthoreovirus
S4

Mammalian orthoreovirus 2
NC_013234
vertebrates
1
Reoviridae,Orthoreovirus,Mammalian
seg.
X60066

D5/Jones orthoreovirus
S4

Mammalian orthoreovirus 3
NC_004274
vertebrates
8
Reoviridae,Orthoreovirus,Mammalian
seg.
GU991661,JX486059

orthoreovirus
L3
,JQ599141,EF494437

,M23747,AF129822,G

U991671,GU589579

Mammalian orthoreovirus 3
NC_004275
vertebrates
11
Reoviridae,Orthoreovirus,Mammalian
seg.
JQ599139,AF378008,

orthoreovirus
L2
GU991660,AF378007

,JX486058,EF494436

,GU991670,AF37801

0,AF378009,GU5895

78,JQ3488

Mammalian orthoreovirus 3
NC_004276
vertebrates
12
Reoviridae,Orthoreovirus,Mammalian
seg.
GU991678,K02739,D

orthoreovirus
S4
0004471,DQ004472,

DQ004473,GU58958

6,JX486066,DQ0044

70,DQ004474,EF494

444,DQ004475,GU99

1668

Mammalian orthoreovirus 3
NC_004277
vertebrates
24
Reoviridae,Orthoreovirus,Mammalian
seg.
JQ979280,JQ979277,

orthoreovirus
S1
GU991675,JQ599138

,JQ979273,GU99166

5,AY302467,JQ97927

2,JQ979275,JQ97928

4,EF494441,JQ97928

2,GU589583,JQ9792

74,JX486063,JQ9792

71,JQ979281,XQ1161

,JQ979283,JQ979278

,JQ979285,M10262,J

0979279,JQ979276

Mammalian orthoreovirus 3
NC_004278
vertebrates
8
Reoviridae,Orthoreovirus,Mammalian
seg.
GU991663,GU58958

orthoreovirus
M2
1,M20161,EF494439,

GU991673,JX486061

M19408,U24260

Mammalian orthoreovirus 3
NC_004279
vertebrates
8
Reoviridae,Orthoreovirus,Mammalian
seg.
GU589584,JX486064

orthoreovirus
S2
,GU991666,L19776,G

U991676,EF494442,J

02327,M25780

Mammalian orthoreovirus 3
NC_004280
vertebrates
13
Reoviridae,Orthoreovirus,Mammalian
seg.
GU991672,GU58958

orthoreovirus
M1
0,GU991662,AY4288

78,M27261,AY42887

5,AY551083,EF49443

8,AY428876,AF46168

3,AY428877,JX48606

0,AF461684

Mammalian orthoreovirus 3
NC_004281
vertebrates
7
Reoviridae,Orthoreovirus,Mammalian
seg.
GU991664,AF174384

orthoreovirus
M3
,JX486062,EF494440

,M27262,GU589582,

GU991674

Mammalian orthoreovirus 3
NC_004282
vertebrates
7
Reoviridae,Orthoreovirus,Mammalian
seg.
M31058,GU991669,J

orthoreovirus
L1
0599140,GU589577,

EF494435,JX486057,

GU991659

Mammalian orthoreovirus 3
NC_004283
vertebrates
6
Reoviridae,Orthoreovirus,Mammalian
seg.
JX486065,XQ1627,G

orthoreovirus
S3
U991667,GU991677,

GU589585,EF494443

Mammalian orthoreovirus 3
NC_013225
vertebrates
1
Reoviridae,Orthoreovirus,Mammalian
seg.
GQ468266

orthoreovirus
L1

Mammalian orthoreovirus 3
NC_013226
vertebrates
1
Reoviridae,Orthoreovirus,Mammalian
seg.
GQ468267

orthoreovirus
L2

Mammalian orthoreovirus 3
NC_013227
vertebrates
1
Reoviridae,Orthoreovirus,Mammalian
seg.
GQ468268

orthoreovirus
M1

Mammalian orthoreovirus 3
NC_013228
vertebrates
8
Reoviridae,Orthoreovirus,Mammalian
seg.
GU991663,GU58958

orthoreovirus
M2
1,M20161,EF494439,

GU991673,GQ46826

9,JX486061,U24260

Mammalian orthoreovirus 3
NC_013229
vertebrates
1
Reoviridae,Orthoreovirus,Mammalian
seg.
GQ468270

orthoreovirus
L3

Mammalian orthoreovirus 3
NC_013230
vertebrates
7
Reoviridae,Orthoreovirus,Mammalian
seg.
GU991664,AF174384

orthoreovirus
M3
,JX486062,EF494440

,GU589582,GU99167

4,GQ468271

Mammalian orthoreovirus 3
NC_013231
vertebrates
1
Reoviridae,Orthoreovirus,Mammalian
seg.
GQ468272

orthoreovirus
Si

Mammalian orthoreovirus 3
NC_013232
vertebrates
8
Reoviridae,Orthoreovirus,Mammalian
seg.
GU589584,JX486064

orthoreovirus
S2
,GU991666,L19776,G

U991676,EF494442,

GQ468273,JQ2327

Mammalian orthoreovirus 3
NC_013233
vertebrates
1
Reoviridae,Orthoreovirus,Mammalian
seg.
GQ468274

orthoreovirus
S3

Mammalian orthoreovirus 3
NC_013234
vertebrates
12
Reoviridae,Orthoreovirus,Mammalian
seg.
GU991678,DQ00447

orthoreovirus
S4
1,DQ004472,DQ0044

73,GU589586,JX486

066,GQ468275,DQ00

4470,DQ004474,EF4

94444,DQ004475,GU

991668

Mammalian orthoreovirus 3
NC_004274
vertebrates
1
Reoviridae,Orthoreovirus,Mammalian
seg.
HM159615

Dearing orthoreovirus
L3

Mammalian orthoreovirus 3
NC_004275
vertebrates
1
Reoviridae,Orthoreovirus,Mammalian
seg.
HM159614

Dearing orthoreovirus
L2

Mammalian orthoreovirus 3
NC_004276
vertebrates
4
Reoviridae,Orthoreovirus,Mammalian
seg.
AF332135,HM159622

Dearing orthoreovirus
S4
,AF332136,AF332137

Mammalian orthoreovirus 3
NC_004277
vertebrates
1
Reoviridae,Orthoreovirus,Mammalian
seg.
HM159619

Dearing orthoreovirus
51

Mammalian orthoreovirus 3
NC_004278
vertebrates
1
Reoviridae,Orthoreovirus,Mammalian
seg.
HM159617

Dearing orthoreovirus
M2

Mammalian orthoreovirus 3
NC_004279
vertebrates
1
Reoviridae,Orthoreovirus,Mammalian
seg.
HM159620

Dearing orthoreovirus
S2

Mammalian orthoreovirus 3
NC_004280
vertebrates
1
Reoviridae,Orthoreovirus,Mammalian
seg.
HM159616

Dearing orthoreovirus
M1

Mammalian orthoreovirus 3
NC_004281
vertebrates
1
Reoviridae,Orthoreovirus,Mammalian
seg.
HM159618

Dearing orthoreovirus
M3

Mammalian orthoreovirus 3
NC_004282
vertebrates
1
Reoviridae,Orthoreovirus,Mammalian
seg.
HM159613

Dearing orthoreovirus
L1

Mammalian orthoreovirus 3
NC_004283
vertebrates
1
Reoviridae,Orthoreovirus,Mammalian
seg.
HM159621

Dearing orthoreovirus
S3

Mammalian orthoreovirus 3
NC_013228
vertebrates
1
Reoviridae,Orthoreovirus,Mammalian
seg.
HM159617

Dearing orthoreovirus
M2

Mammalian orthoreovirus 3
NC_013230
vertebrates
1
Reoviridae,Orthoreovirus,Mammalian
seg.
HM159618

Dearing orthoreovirus
M3

Mammalian orthoreovirus 3
NC_013232
vertebrates
1
Reoviridae,Orthoreovirus,Mammalian
seg.
HM159620

Dearing orthoreovirus
S2

Mammalian orthoreovirus 3
NC_013234
vertebrates
4
Reoviridae,Orthoreovirus,Mammalian
seg.
AF332135,HM159622

Dearing orthoreovirus
S4
,AF332136,AF332137

Mammalian orthoreovirus 4
NC_004276
vertebrates
1
Reoviridae,Orthoreovirus,Mammalian
seg.
AF368037

Ndelle

orthoreovirus
S4

Mammalian orthoreovirus 4
NC_004277
vertebrates
1
Reoviridae,Orthoreovirus,Mammalian
seg.
AF368035

Ndelle

orthoreovirus
S1

Mammalian orthoreovirus 4
NC_004278
vertebrates
1
Reoviridae,Orthoreovirus,Mammalian
seg.
AF368034

Ndelle

orthoreovirus
M2

Mammalian orthoreovirus 4
NC_004279
vertebrates
1
Reoviridae,Orthoreovirus,Mammalian
seg.
AF368036

Ndelle

orthoreovirus
S2

Mammalian orthoreovirus 4
NC_004282
vertebrates
1
Reoviridae,Orthoreovirus,Mammalian
seg.
AF368033

Ndelle

orthoreovirus
L1

Mammalian orthoreovirus 4
NC_013228
vertebrates
1
Reoviridae,Orthoreovirus,Mammalian
seg.
AF368034

Ndelle

orthoreovirus
M2

Mammalian orthoreovirus 4
NC_013232
vertebrates
1
Reoviridae,Orthoreovirus,Mammalian
seg.
AF368036

Ndelle

orthoreovirus
S2

Mammalian orthoreovirus 4
NC_013234
vertebrates
1
Reoviridae,Orthoreovirus,Mammalian
seg.
AF368037

Ndelle

orthoreovirus
S4

Marine birnavirus
NC_008019
vertebrates
5
Birnaviridae,Aquabirnavirus,Marine birnavirus
seg. A
AY283785,AY064396

,AY283781,AY28378

2,AY283784

Marine birnavirus
NC_008026
vertebrates
3
Birnaviridae,Aquabirnavirus,Marine birnavirus
seg. B
AY123970,AY129665

,AY129666

Marine birnavirus-H1
NC_008019
vertebrates
1
Birnaviridae,Aquabirnavirus,Marine birnavirus
seg. A
AY283783

Mason-Pfizer monkey virus
NC_001550
vertebrates
2
Retroviridae,Betaretrovirus,Mason-Pfizer
—
AF033815,M12349

monkey virus

Mastomys coucha
NC_008519
vertebrates
1
Papillomaviridae,Pipapillomavirus,Pipapilloma
—
DQ664501

papillomavirus 2

virus 1

Mastomys natalensis
NC_001605
vertebrates
1
Papillomaviridae,lotapapillomavirus,lotapapillo
—
U01834

papillomavirus

mavirus 1

Melaka orthoreovirus
NC_020439
vertebrates
1
Reoviridae,Orthoreovirus,Melaka
seg.
F342660

orthoreovirus
L1

Melaka orthoreovirus
NC_020440
vertebrates
1
Reoviridae,Orthoreovirus,Melaka
seg.
F342662

orthoreovirus
L3

Melaka orthoreovirus
NC_020441
vertebrates
1
Reoviridae,Orthoreovirus,Melaka
seg.
F342663

orthoreovirus
M1

Melaka orthoreovirus
NC_020442
vertebrates
1
Reoviridae,Orthoreovirus,Melaka
seg.
F342664

orthoreovirus
M2

Melaka orthoreovirus
NC_020443
vertebrates
1
Reoviridae,Orthoreovirus,Melaka
seg.
F342665

orthoreovirus
M3

Melaka orthoreovirus
NC_020444
vertebrates
1
Reoviridae,Orthoreovirus,Melaka
seg.
EF026044

orthoreovirus
S2

Melaka orthoreovirus
NC_020445
vertebrates
1
Reoviridae,Orthoreovirus,Melaka
seg.
EF026045

orthoreovirus
S3

Melaka orthoreovirus
NC_020446
vertebrates
1
Reoviridae,Orthoreovirus,Melaka
seg.
EF026046

orthoreovirus
S4

Melaka orthoreovirus
NC_020447
vertebrates
1
Reoviridae,Orthoreovirus,Melaka
seg.
F342661

orthoreovirus
L2

Melaka orthoreovirus
NC_020448
vertebrates
1
Reoviridae,Orthoreovirus,Melaka
seg.
EF026043

orthoreovirus
S1

Meleagrid herpesvirus 1
NC_002641
vertebrates
2
Herpesviridae,Mardivirus,Meleagrid
—
AF282130,AF291866

herpesvirus 1

Mengo virus
NC_001479
vertebrates
2
Picornaviridae,Cardiovirus,Encephalomyocard
—
L22089, DQ294633

itis virus

Mesocricetus auratus
NC_022647
vertebrates
1
Papillomaviridae,Mesocricetus auratus
—
HG530538

papillomavirus 1

papillomavirus 1

Middle East respiratory
NC_019843
vertebrates
30
Coronaviridae,Betacoronavirus,Middle East
—
KF600645,KF192507,

syndrome coronavirus

respiratory syndrome coronavirus

KJ156944,KJ156952,

KJ156869,KF600630,

KF600652,KF600634,

KJ156934,KF600620,

KF600651,KF600644,

KF600612,KF600627,

KF600628,KF961221,

KF961222,KF600613,

KF186565,KF745068,

KF186564,KF186566,

KF600647,KF186567,

KJ156910,KJ156874,

KF600632,KJ156881,

KJ156866,KJ156949

Miniopterus bat coronavirus
NC_010438
vertebrates
1
Coronaviridae,Alphacoronavirus,Miniopterus
—
EU420139

HKU8

bat coronavirus HKU8

Miniopterus polyomavirus
NC_020069
vertebrates
1
Polyomaviridae,Polyomavirus,Miniopterus
—
JX520661

polyomavirus

Mink astrovirus
NC_004579
vertebrates
1
Astroviridae,Mamastrovirus,Mamastrovirus 10
—
GU985458

Mink calicivirus
NC_019712
vertebrates
1
Caliciviridae,Vesivirus,Mink calicivirus
—
JX847605

Minute virus of mice
NC_001510
vertebrates
3
Parvoviridae,Parvovirus,Minute virus of mice
—
M12032,JQ2275,DQ1

96317

Molluscum contagiosum
NC_001731
vertebrates
1
Poxviridae,Molluscipoxvirus,Molluscum
—
U60315

virus subtype 1

contagiosum virus

Moloney murine leukemia
NC_001702
vertebrates
2
Retroviridae,Gammaretrovirus,Murine
—
AF462057,CS272315

virus
,NC_00181

leukemia virus

9,NC_0013

62,NC_001

501

Moloney murine sarcoma
NC_001502
vertebrates
4
Retroviridae,Gammaretrovirus,Moloney
—
JQ2266,V01185,V011

virus

murine sarcoma virus

84,AF033813

Monkey B-lymphotropic
NC_004763
vertebrates
1
Polyomaviridae,Polyomavirus,African green
—
M30540

papovavirus

monkey polyomavirus

Monkeypox virus
NC_003310
vertebrates
36
Poxviridae,Orthopoxvirus,Monkeypox virus
—
JX878427,AY741551,

JX878415,JX878410,

JX878416,JX878422,

DQ011156,JX878419

,HQ857562,JX87840

7,JX878414,DQ0111

54,JX878408,JX8784

28,AY753185,DQ011

155,JX878409,JX878

420,JX878426,JX878

417,JX878429,HM17

2544,JX878412,JX87

8423,DQ011157,JX8

78425,DQ011153,JX

878421,KC257459,JX

878424,KC257460,A

Y603973, HQ857563,

JX878411,JX878413,

JX878418

Monkeypox virus Zaire-96-
NC_003310
vertebrates
1
Poxviridae,Orthopoxvirus,Monkeypox virus
—
AF380138

1-16

Morelia spilota
NC_016013
vertebrates
1
Papillomaviridae,Morelia spilota
—
HQ262535

papillomavirus 1

papillomavirus 1

Mouse astrovirus M-
NC_015935
vertebrates
1
Astroviridae,Mouse astrovirus M-
—
JF755422

52/USA/2008

52/USA/2008

Mouse kobuvirus M-
NC_015936
vertebrates
1
Picornaviridae,Kobuvirus,Mouse kobuvirus M-
—
JF755427

5/USA/2010

5/USA/2010

Mouse mammary tumor
NC_001503
vertebrates
3
Retroviridae,Betaretrovirus,Mouse mammary
—
AF033807,M15122,D

virus

tumor virus

16249

Mouse parvovirus 1
NC_001630
vertebrates
1
Parvoviridae,Parvovirus,Mouse parvovirus 1
—
U12469

Mouse parvovirus le
NC_001630
vertebrates
1
Parvoviridae,Parvovirus,Mouse parvovirus 1
—
DQ898166

Mouse parvovirus 2
NC_008186
vertebrates
1
Parvoviridae,Parvovirus,Mouse parvovirus 2
—
DQ196319

Mouse parvovirus 3
NC_008185
vertebrates
1
Parvoviridae,Parvovirus,Mouse parvovirus 3
—
DQ196318

Mouse parvovirus 4a
NC_011619
vertebrates
1
Parvoviridae,Parvovirus,Mouse parvovirus 4
—
FJ440683

Mouse parvovirus 4b
NC_011619
vertebrates
1
Parvoviridae,Parvovirus,Mouse parvovirus 4
—
FJ445512

Mouse parvovirus 5a
NC_011618
vertebrates
1
Parvoviridae,Parvovirus,Mouse parvovirus 5a
—
FJ441297

Mouse polyomavirus (strain
NC_001515
vertebrates
1
Polyomaviridae,Polyomavirus,Murine
—
K02737

Crawford small-plaque)

polyomavirus

Mulard duck circovirus
NC_005053
vertebrates
2
Circoviridae,Circovirus,Duck circovirus
—
HQ180266,AY228555

,NC_00722

0,NC_0065

61

Munia coronavirus HKU13-
NC_011550
vertebrates
1
Coronaviridae, Deltacoronavi rus, Munia
—
FJ376622

3514

coronavirus HKU13

Murid herpesvirus 1
NC_004065
vertebrates
8
Herpesviridae,Muromegalovirus,Murid
—
GU305914,U68299,H

herpesvirus 1

E610452,HE610456,

HE610455,HE610454

,HE610451,HE61045

3

Murid herpesvirus 2
NC_002512
vertebrates
1
Herpesviridae,Muromegalovirus,Murid
—
AF232689

herpesvirus 2

Murid herpesvirus 4
NC_001826
vertebrates
2
Herpesviridae,Rhadinovirus,Murid herpesvirus
—
U97553,AF105037

4

Murid herpesvirus 8
NC_019559
vertebrates
1
Herpesviridae,Muromegalovirus,Murid
—
JX867617

herpesvirus 8

Murine adenovirus 2
NC_014899
vertebrates
1
Adenoviridae,Mastadenovirus,Murine
—
HM049560

adenovirus B

Murine adenovirus 3
NC_012584
vertebrates
1
Adenoviridae,Mastadenovirus,Murine
—
EU835513

adenovirus C

Murine adenovirus A
NC_000942
vertebrates
1
Adenoviridae,Mastadenovirus,Murine
—
M22245

adenovirus A

Murine astrovirus
NC_018702
vertebrates
2
Astroviridae,Murine astrovirus
—
JX544744,JX544743

Murine coronavirus
NC_012936
vertebrates
6
Coronaviridae, Betacoronavirus, Murine
—
JX169866,KF268338,

NC_00184

coronavirus

KF268337,KF268339,

6

KF268336,JX169867

Murine coronavirus MHV-1
NC_012936
vertebrates
1
Coronaviridae,Betacoronavirus,Murine
—
FJ647223

,NC_00184

coronavirus

6

Murine coronavirus MHV-3
NC_012936
vertebrates
1
Coronaviridae,Betacoronavirus,Murine
—
FJ647224

,NC_00184

coronavirus

6

Murine coronavirus MHV-
NC_012936
vertebrates
1
Coronaviridae,Betacoronavirus,Murine
—
FJ647226

JHM,IA
,NC_00184

coronavirus

6

Murine coronavirus
NC_012936
vertebrates
1
Coronaviridae,Betacoronavirus,Murine
—
FJ647218

RA59/R13
,NC_00184

coronavirus

6

Murine coronavirus
NC_012936
vertebrates
1
Coronaviridae,Betacoronavirus,Murine
—
FJ647220

RA59/SJHM
,NC_00184

coronavirus

6

Murine coronavirus
NC_012936
vertebrates
1
Coronaviridae,Betacoronavirus,Murine
—
FJ647219

RJHM/A
,NC_00184

coronavirus

6

Murine coronavirus
NC_012936
vertebrates
1
Coronaviridae,Betacoronavirus,Murine
—
FJ647222

SA59/RJHM
,NC_00184

coronavirus

6

Murine coronavirus inf-
NC_012936
vertebrates
1
Coronaviridae,Betacoronavirus,Murine
—
FJ647225

MHV-A59
,NC_00184

coronavirus

6

Murine coronavirus
NC_012936
vertebrates
1
Coronaviridae,Betacoronavirus,Murine
—
FJ647221

repA59/RJHM
,NC_00184
coronavirus

6

Murine coronavirus
NC_012936
vertebrates
1
Coronaviridae,Betacoronavirus,Murine
—
FJ647227

repJHM/RA59
,NC_00184

coronavirus

6

Murine cytomegalovirus
NC_004065
vertebrates
1
Herpesviridae,Muromegalovirus,Murid
—
AM886412

(strain K181)

herpesvirus 1

Murine hepatitis virus
NC_012936
vertebrates
5
Coronaviridae,Betacoronavirus,Murine
—
AY700211,AF208067,

,NC_00184

coronavirus

AB551247,AF208066,

6

GU593319

Murine hepatitis virus strain
NC_012936
vertebrates
1
Coronaviridae,Betacoronavirus,Murine
—
AF201929

2
NC_00184

coronavirus

6

Murine hepatitis virus strain
NC_012936
vertebrates
2
Coronaviridae,Betacoronavirus,Murine
—
FJ884686,FJ884687

A59

coronavirus

Murine hepatitis virus strain
NC_00184
vertebrates
1
Coronaviridae,Betacoronavirus,Murine
—
AF207902

ML-11
NC_012936

coronavirus

NC_00184

6

Murine hepatitis virus strain
NC_012936
vertebrates
1
Coronaviridae,Betacoronavirus,Murine
—
JQ173883

S/3239-17
,NC_00184

coronavirus

6

Murine leukemia virus
NC_001702
vertebrates
12
Retroviridae,Gammaretrovirus,Murine
—
AB187566,Y13893,M

,NC_00181

leukemia virus

87550,DQ366149,AY

9,NC_0013

252102,AF019230,AB

62,NC_001

187565,AY818896,AF

501

169256,K03363,U137

66,JQ2255

Murine leukemia virus
NC_001702
vertebrates
1
Retroviridae,Gammaretrovirus,Murine
—
HQ246218

N417
,NC_001811

eukemia virus

9,NC_0013

62,NC_001

501

Murine norovirus
NC_008311
vertebrates
8
Caliciviridae,Norovirus,Murine norovirus
—
EF531291,AB435514,

AB435515,JXQ48594,

DQ911368,EF531290

,HQ317203,AB60176

9

Murine norovirus 1
NC_008311
vertebrates
13
Caliciviridae,Norovirus,Murine norovirus
—
EU004660,EU004654

,EF014462,EU00466

2,EU004661,EU0046

59,AY228235,EU004

656,EU004657,DQ28

5629,EU004655,EU0

04658,KC782764

Murine norovirus 2
NC_008311
vertebrates
1
Caliciviridae,Norovirus,Murine norovirus
—
DQ223041

Murine norovirus 3
NC_008311
vertebrates
4
Caliciviridae,Norovirus,Murine norovirus
—
KC792553,DQ223042

,FJ446720,JQ658375

Murine norovirus 4
NC_008311
vertebrates
2
Caliciviridae,Norovirus,Murine norovirus
—
DQ223043,FJ446719

Murine norovirus
NC_008311
vertebrates
1
Caliciviridae,Norovirus,Murine norovirus
—
EU004672

GV/C R1/2005/USA

Murine norovirus
NC_008311
vertebrates
1
Caliciviridae,Norovirus,Murine norovirus
—
EU004678

GV/CR10/2005/USA

Murine norovirus
NC_008311
vertebrates
1
Caliciviridae,Norovirus,Murine norovirus
—
EU004679

GV/CR11/2005/USA

Murine norovirus
NC_008311
vertebrates
1
Caliciviridae,Norovirus,Murine norovirus
—
EU004680

GV/CR13/2005/USA

Murine norovirus
NC_008311
vertebrates
1
Caliciviridae,Norovirus,Murine norovirus
—
EU004681

GV/CR15/2005/USA

Murine norovirus
NC_008311
vertebrates
1
Caliciviridae,Norovirus,Murine norovirus
—
EU004682

GV/CR17/2005/USA

Murine norovirus
NC_008311
vertebrates
1
Caliciviridae,Norovirus,Murine norovirus
—
EU004683

GV/CR18/2005/DEU

Murine norovirus
NC_008311
vertebrates
1
Caliciviridae,Norovirus,Murine norovirus
—
EU004673

GV/CR3/2005/USA

Murine norovirus
NC_008311
vertebrates
1
Caliciviridae,Norovirus,Murine norovirus
—
EU004674

GV/CR4/2005/USA

Murine norovirus
NC_008311
vertebrates
1
Caliciviridae,Norovirus,Murine norovirus
—
EU004675

GV/CRS/2005/USA

Murine norovirus
NC_008311
vertebrates
2
Caliciviridae,Norovirus,Murine norovirus
—
EU004676,JQ237823

GV/CR6/2005/USA

Murine norovirus
NC_008311
vertebrates
1
Caliciviridae,Norovirus,Murine norovirus
—
EU004677

GV/CR7/2005/USA

Murine norovirus GV/NIH-
NC_008311
vertebrates
1
Caliciviridae,Norovirus,Murine norovirus
—
JF320644

2409/2005/USA

Murine norovirus GV/NIH-
NC_008311
vertebrates
1
Caliciviridae,Norovirus,Murine norovirus
—
JF320645

2410/2005/USA

Murine norovirus GV/NIH-
NC_008311
vertebrates
1
Caliciviridae,Norovirus,Murine norovirus
—
JF320646

2411/2005/USA

Murine norovirus GV/NIH-
NC_008311
vertebrates
1
Caliciviridae,Norovirus,Murine norovirus
—
JF320647

2747/2005/USA

Murine norovirus GV/NIH-
NC_008311
vertebrates
1
Caliciviridae,Norovirus,Murine norovirus
—
JF320648

2750/2005/USA

Murine norovirus GV/NIH-
NC_008311
vertebrates
1
Caliciviridae,Norovirus,Murine norovirus
—
JF320649

4421/2005/USA

Murine norovirus GV/NIH-
NC_008311
vertebrates
1
Caliciviridae,Norovirus,Murine norovirus
—
JF320650

4428/2005/USA

Murine norovirus GV/NIH-
NC_008311
vertebrates
1
Caliciviridae,Norovirus,Murine norovirus
—
JF320651

4431/2005/USA

Murine norovirus GV/NIH-
NC_008311
vertebrates
1
Caliciviridae,Norovirus,Murine norovirus
—
JF320652

A114/2006/USA

Murine norovirus GV/NIH-
NC_008311
vertebrates
1
Caliciviridae,Norovirus,Murine norovirus
—
JF320653

D220/2007/USA

Murine norovirus
NC_008311
vertebrates
1
Caliciviridae,Norovirus,Murine norovirus
—
EU004663

GV/W U11/2005/U SA

Murine norovirus
NC_008311
vertebrates
1
Caliciviridae,Norovirus,Murine norovirus
—
EU004664

GV/WU12/2005/USA

Murine norovirus
NC_008311
vertebrates
1
Caliciviridae,Norovirus,Murine norovirus
—
EU004665

GV/WU20/2005/USA

Murine norovirus
NC_008311
vertebrates
1
Caliciviridae,Norovirus,Murine norovirus
—
EU004666

GV/WU21/2005/USA

Murine norovirus
NC_008311
vertebrates
1
Caliciviridae,Norovirus,Murine norovirus
—
EU004667

GV/WU22/2005/USA

Murine norovirus
NC_008311
vertebrates
1
Caliciviridae,Norovirus,Murine norovirus
—
EU004668

GV/WU23/2005/USA

Murine norovirus
NC_008311
vertebrates
1
Caliciviridae,Norovirus,Murine norovirus
—
EU004669

GV/WU24/2005/USA

Murine norovirus
NC_008311
vertebrates
1
Caliciviridae,Norovirus,Murine norovirus
—
EU004670

GV/WU25/2005/USA

Murine norovirus
NC_008311
vertebrates
1
Caliciviridae,Norovirus,Murine norovirus
—
EU004671

GV/WU26/2005/USA

Murine osteosarcoma virus
NC_001506
vertebrates
1
Retroviridae,Gammaretrovirus,Murine
—
AF033814

osteosarcoma virus

Murine pneumotropic virus
NC_001505
vertebrates
2
Polyomaviridae,Polyomavirus,Murine
—
M55904, EF186666

pneumotropic virus

Murine polyomavirus
NC_001515
vertebrates
3
Polyomaviridae,Polyomavirus,Murine
—
U27812,U27813,JQ22

polyomavirus
88

Murine polyomavirus strain
NC_001515
vertebrates
1
Polyomaviridae,Polyomavirus,Murine
—
JQ2289

A3

polyomavirus

Murine polyomavirus strain
NC_001515
vertebrates
1
Polyomaviridae,Polyomavirus,Murine
—
AF442959

BG

polyomavirus

Murine type C retrovirus
NC_001702
vertebrates
1
Retroviridae,Gammaretrovirus,Murine
—
X94150

,NC_00181

leukemia virus

9,NC_0013

62,NC_001

501

Muromegalovirus C4A
NC_004065
vertebrates
1
Herpesviridae,Muromegalovirus,Murid
—
EU579861

herpesvirus 1

Muromegalovirus G4
NC_004065
vertebrates
1
Herpesviridae,Muromegalovirus,Murid
—
EU579859

herpesvirus 1

Muromegalovirus WP15B
NC_004065
vertebrates
1
Herpesviridae,Muromegalovirus,Murid
—
EU579860

herpesvirus 1

Mus dunniendogenous
NC_001702
vertebrates
1
Retroviridae,Gammaretrovirus,Murine
—
AF053745

virus
,NC_00181

leukemia virus

9,NC_0013

62,NC_001

501

Muscovy duck circovirus
NC_005053
vertebrates
17
Circoviridae,Circovirus,Duck circovirus
—
GQ423743,GQ86875

,NC_00722

7,GQ423746,HQ1802

0,NC_0065

65,GU 168779,EF370

61

476,DQ166836,DQ16

6838,GQ423742,DQ1

66837,GQ423744,GQ

334371,FJ554673,G

0423741,EF451157,J

X499186,GQ423745

Muscovy duck parvovirus
NC_006147
vertebrates
3
Parvoviridae,Dependovirus,Duck parvovirus
—
KC171936,X75093,U

22967

Muscovy duck reovirus
NC_015126
vertebrates
3
Reoviridae,Orthoreovirus,Avian orthoreovirus
seg.
KC508647,KF306082

L1
,JX478260

Muscovy duck reovirus
NC_015127
vertebrates
3
Reoviridae,Orthoreovirus,Avian orthoreovirus
seg.
KC508648,JX478261,

L2
KF306083

Muscovy duck reovirus
NC_015128
vertebrates
3
Reoviridae,Orthoreovirus,Avian orthoreovirus
seg.
KC508649,JX478262,

L3
KF306084

Muscovy duck reovirus
NC_015129
vertebrates
3
Reoviridae,Orthoreovirus,Avian orthoreovirus
seg.
KC508650,KF306085

M1
,JX478263

Muscovy duck reovirus
NC_015130
vertebrates
4
Reoviridae,Orthoreovirus,Avian orthoreovirus
seg.
KF306086,KC756359

M2
,KC508651,JX478264

Muscovy duck reovirus
NC_015131
vertebrates
3
Reoviridae,Orthoreovirus,Avian orthoreovirus
seg.
KC508652,JX478265,

M3
KF306087

Muscovy duck reovirus
NC_015132
vertebrates
4
Reoviridae,Orthoreovirus,Avian orthoreovirus
seg.
DQ198854,KC508653

S1
,KF306088,DQ19136

3

Muscovy duck reovirus
NC_015133
vertebrates
4
Reoviridae,Orthoreovirus,Avian orthoreovirus
seg.
DQ198857,KC508654

S2
,KF306089,JX478267

Muscovy duck reovirus
NC_015134
vertebrates
3
Reoviridae,Orthoreovirus,Avian orthoreovirus
seg.
KC508655,JX478268,

S3
KF306090

Muscovy duck reovirus
NC_015135
vertebrates
2
Reoviridae,Orthoreovirus,Avian orthoreovirus
seg.
KF306091,JX478269

S4

Muscovy duck reovirus
NC_015131
vertebrates
1
Reoviridae,Orthoreovirus,Avian orthoreovirus
seg.
AJ293969

89330

M3

Muscovy duck reovirus S14
NC_015130
vertebrates
1
Reoviridae,Orthoreovirus,Avian orthoreovirus
seg.
DQ989557

M2

Myotis polyomavirus VM-
NC_011310
vertebrates
1
Polyomaviridae,Polyomavirus,Bat
—
FJ188392

2008

polyomavirus

Myxoma virus
NC_001132
vertebrates
34
Poxviridae,Leporipoxvirus,Myxoma virus
—
JX565567,EU552530,

JX565566,JX565573,

KC660080,KC660082

,JX565565,JX565574,

JX565568,JX565580,

JX565564,JX565569,

KC660083,KC660079

,KC660084,AF17072

6,KC660081,JX56557

1,JX565570,JX56557

2,KF148065,JX56558

2,JX565579,GQ4099

69,JX565575,JX5655

78,JX565563,KC6600

85,JX565584,JX5655

77,JX565583,JX5655

62,JX565581,JX5655

76

Night-heron coronavirus
NC_016994
vertebrates
1
Coronaviridae, Deltacoronavi rus, Night-heron
—
JQ065047

HKU19

coronavirus H KU19

Nile crocodilepox virus
NC_008030
vertebrates
1
Poxviridae,Crocodylidpoxvirus,Nile
—
DQ356948

crocodilepox virus

Old World harvest mouse
NC_008582
vertebrates
1
Papillomaviridae,Pipapillomavirus,Pipapilloma
—
DQ269468

papillomavirus
,NC_01432

virus 2

6

Orange-spotted grouper
NC_003494
vertebrates
1
Incloviridae,Megalocytivirus,Infectious spleen
—
AY894343

iridovirus

and kidney necrosis virus

Orangutan polyomavirus
NC_013439
vertebrates
2
Polyomaviridae,Polyomavirus,Orangutan
—
FN356900,FN356901

polyomavirus

Orf virus
NC_005336
vertebrates
4
Poxviridae,Parapoxvirus,Orf virus
—
DQ184476,AY386263

,HM133903,AY38626

4

Otomops polyomavirus 1
NC_020071
vertebrates
1
Polyomaviridae,Polyomavirus,Otomops
—
JX520664

polyomavirus 1

Otomops polyomavirus 2
NC_020066
vertebrates
1
Polyomaviridae,Polyomavirus,Otomops
—
JX520658

polyomavirus 2

Ovine adenovirus A
NC_002513
vertebrates
1
Adenoviridae,Mastadenovirus,Ovine
—
AF252854

adenovirus A

Ovine adenovirus D
NC_004037
vertebrates
1
Adenoviridae,Atadenovirus,Ovine adenovirus
—
U40839

D

Ovine enterovirus
NC_004441
vertebrates
1
Picornaviridae,Enterovirus,Enterovirus G
—
JQ277724

Ovine enzootic nasal tumor
NC_007015
vertebrates
6
Retroviridae,Betaretrovirus,Ovine enzootic
—
GU292317,GU29231

virus

nasal tumor virus

5,KC189895,GU2923

14,GU292318,GU292

316

Ovine enzootic nasal
NC_007015
vertebrates
1
Retroviridae,Betaretrovirus,Ovine enzootic
—
Y16627

tumour virus

nasal tumor virus

Ovine herpesvirus 2
NC_007646
vertebrates
2
Herpesviridae,Macavirus,Ovine herpesvirus 2
—
AY839756,DQ198083

Ovine lentivirus
NC_001511
vertebrates
3
Retroviridae,Lentivirus,Ovine lentivirus
—
AF479638,M31646,M

34193

Ovine papillomavirus-1
NC_001789
vertebrates
1
Papillomaviridae,Deltapapillomavirus,Deltapap
—
U83594

illomavirus 3

Ovine papillomavirus type 2
NC_001789
vertebrates
1
Papillomaviridae,Deltapapillomavirus,Deltapap
—
U83595

illomavirus 3

PRCV ISU-1
NC_002306
vertebrates
1
Coronaviridae,Alphacoronavirus,Alphacoronav
—
DQ811787

irus 1

PRRSV HB-1(sh)/2002
NC_001961
vertebrates
1
Arteriviridae,Arterivirus,Porcine reproductive
—
AY150312

and respiratory syndrome virus

PRRSV HB-2(sh)/2002
NC_001961
vertebrates
1
Arteriviridae,Arterivirus,Porcine reproductive
—
AY262352

and respiratory syndrome virus

PRRSV HN1
NC_001961
vertebrates
1
Arteriviridae,Arterivirus,Porcine reproductive
—
AY457635

and respiratory syndrome virus

PRRSV LV4,2,1
NC_001961
vertebrates
1
Arteriviridae,Arterivirus,Porcine reproductive
—
AY588319

and respiratory syndrome virus

Pan troglodytes
NC_019858
vertebrates
1
Polyomaviridae,Polyomavirus,Pan troglodytes
—
JX159983

schweinfurthi

schweinfurthii polyomavirus 2

i polyomavirus 2

Pan troglodytes verus
NC_019855
vertebrates
1
Polyomaviridae,Polyomavirus,Pan troglodytes
—
JX159980

polyomavirus 3

verus polyomavirus 3

Pan troglodytes verus
NC_019856
vertebrates
1
Polyomaviridae,Polyomavirus,Pan troglodytes
—
JX159981

polyomavirus 4

verus polyomavirus 4

Pan troglodytes verus
NC_019857
vertebrates
1
Polyomaviridae,Polyomavirus,Pan troglodytes
—
JX159982

polyomavirus 5

verus polyomavirus 5

Panine herpesvirus 2
NC_003521
vertebrates
1
Herpesviridae,Cytomegalovirus,Panine
—
AF480884

herpesvirus 2

Panthera leo persica
NC_004765
vertebrates
1
Papillomaviridae,Lambdapapillomavirus,Lamb
—
AY904724

papillomavirus type 1

dapapillomavirus 1

Papiine herpesvirus 2
NC_007653
vertebrates
1
Herpesviridae,Simplexvirus,Papiine
—
DQ149153

herpesvirus 2

Papio hamadryas
NC_017716
vertebrates
1
Papillomaviridae,Papio hamadryas
—
JF304764

papillomavirus type 1

papillomavirus type 1

Paralichthys olivaceus
NC_009923
vertebrates
1
Birnaviridae,Aquabirnavirus,Paralichthys
seg. A
EU161285

birnavirus

olivaceus birnavirus

Paralichthys olivaceus
NC_009924
vertebrates
1
Birnaviridae,Aquabirnavirus,Paralichthys
seg. B
EU161286

birnavirus

olivaceus birnavirus

Parrot hepatitis B virus
NC_016561
vertebrates
19
Hepadnaviridae,Avihepadnavirus,Parrot
—
JX274035,JX274023,

hepatitis B virus

JX274021,JX274029,

JX274030,JX274019,

JN565944,JX274032,

JX274034,JX274033,

JX274027,JX274026,

JX274018,JX274024,

JX274020,JX274022,

JX274031,JX274028,

JX274025

Parvo-like hybrid virus UC1
NC_022089
vertebrates
1
Parvoviridae, Parvovirus NIH-CQV
—
KF170373

Parvo-like hybrid virus
NC_022089
vertebrates
1
Parvoviridae,Parvovirus NIH-COV
—
KF214638

UC11

Parvo-like hybrid virus UC4
NC_022089
vertebrates
1
Parvoviridae,Parvovirus NIH-COV
—
KF214645

Parvo-like hybrid virus UC9
NC_022089
vertebrates
1
Parvoviridae,Parvovirus NIH-COV
—
KF214640

Parvovirus NIH-COV
NC_022089
vertebrates
1
Parvoviridae, Parvovirus NIH-COV
—
KC617868

Pegivirus A
NC_001837
vertebrates
1
Flaviviridae,Pegivirus,Pegivirus A
—
U94421

Penaeus monodon
NC_022897
vertebrates
1
Circoviridae,Circovirus,Penaeus monodon
—
KF481961

circovirus VN11

circovirus VN11

Penaeus monodon
NC_011545
vertebrates
1
Parvoviridae,Parvovirus,Penaeus monodon
—
FJ410797

hepatopancreatic

hepatopancreatic parvovirus

parvovirus

Perch rhabdovirus
NC_020803
vertebrates
1
Rhabdoviridae,Perhabdovirus,Perch
—
JX679246

rhabdovirus

Pestivirus Giraffe-1
NC_003678
vertebrates
1
Flaviviridae,Pestivirus,Pestivirus Giraffe-1
—
AF144617

Pestivirus reindeer-1 V60-
NC_003679
vertebrates
1
Flaviviridae,Pestivirus,Border disease virus
—
AF144618

Krefeld

Pestivirus strain Aydin/04-
NC_018713
vertebrates
1
Flaviviridae,Pestivirus,Pestivirus strain
—
JX428945

TR

Aydin/04-TR

Phocoena phocoena
NC_018074
vertebrates
1
Papillomaviridae,Phocoena phocoena
—
GU117621

papillomavirus 1

papillomavirus 1

Phocoena phocoena
NC_018075
vertebrates
1
Papillomaviridae,Phocoena phocoena
—
GU117622

papillomavirus 2

papillomavirus 2

Phocoena phocoena
NC_018076
vertebrates
1
Papillomaviridae,Phocoena phocoena
—
GU117623

papillomavirus 4

papillomavirus 4

Phocoena spinipinnis
NC_003348
vertebrates
1
Papillomaviridae,Omikronpapillomavirus,Omik
—
AJ238373

papillomavirus 1

ronpapillomavirus 1

Pigeon picornavirus B
NC_015626
vertebrates
2
Picornaviridae, Pigeon picornavirus B
—
KC560801,FR727144

Piliocolobus rufomitratus
NC_019850
vertebrates
1
Polyomaviridae,Polyomavirus,Piliocolobus
—
JX159984

polyomavirus 1

rufomitratus polyomavirus 1

Pipistrellus bat coronavirus
NC_009020
vertebrates
1
Coronaviridae,Betacoronavirus,Pipistrellus bat
—
EF065509

HKU5

coronavirus HKU5

Polyomavirus HPyV6
NC_014406
vertebrates
6
Polyomaviridae,Polyomavirus,Polyomavirus
—
HM011559,HM01155

HPyV6

8,HM011560,HM0115

62,HM011561,HM011

563

Polyomavirus HPyV7
NC_014407
vertebrates
6
Polyomaviridae,Polyomavirus,Polyomavirus
—
HM011566,HM01156

HPyV7

8,HM011565,HM0115

69,HM011564,HM011

567

Porcine adenovirus C
NC_002702
vertebrates
1
Adenoviridae, Mastadenovirus, Porcine
—
AF289262

adenovirus C

Porcine astrovirus 3
NC_019494
vertebrates
1
Astroviridae,Mamastrovirus,Porcine astrovirus
—
JX556691

3

Porcine bocavirus 3
NC_016031
vertebrates
4
Parvoviridae,Bocavirus,Porcine bocavirus 3
—
JF713715,JF429834,

JF713714,KC473563

Porcine bocavirus 3C
NC_016031
vertebrates
1
Parvoviridae,Bocavirus,Porcine bocavirus 3
—
JN681175

Porcine bocavirus 4-1
NC_016032
vertebrates
1
Parvoviridae,Bocavirus,Porcine bocavirus 4
—
JF429835

Porcine bocavirus 4-2
NC_016032
vertebrates
1
Parvoviridae,Bocavirus,Porcine bocavirus 4
—
JF429836

Porcine bocavirus 5/JS677
NC_016647
vertebrates
1
Parvoviridae,Bocavirus,Porcine bocavirus
—
JN831651

5/JS677

Porcine circovirus
NC_013774
vertebrates
2
Circoviridae,Circovirus,Porcine circovirus type
—
FJ790425,FJ655419

1/2a

Porcine circovirus 1
NC_001792
vertebrates
51
Circoviridae,Circovirus,Porcine circovirus 1
—
DQ472013,DQ47201

2,FJ475129,GU79957

5,AY099501,DQ4720

14,AF012107,KC924

758,FJ159689,JX566

507,EF533941,DQ47

2016,DQ659153,GU3

71908,DQ659154,AY

754012,DQ494787,J

N398656,KC878437,J

N133302,AY660574,

KC527543,AY699796

,DQ650650,FJ159693

,KC733436,FJ159690

,Y09921,AY184287,K

C990120,AY193712,

DQ472015,AY754013

,AF071879,GU72233

4,FJ159692,EF49384

3,KC894933,KC4474

55,KF732857,AY2198

36,DQ358813,FJ1596

91,JN133303,DQ648

032,AY754015,GQ44

9671,U49186,AY7540

14,HM143844,DQ494

788

Porcine circovirus 2
NC_005148
vertebrates
1115
Circoviridae,Circovirus,Porcine circovirus 2
—
JX912914,KC800642,

FJ660970,EF524519,

DQ910865,KC800640

,JX948775,FJ870971,

FJ948167,EU148504,

EF452350,JX982222,

FJ905468,EF524528,

HQ831529,HM00010

0,EF524517,EF56534

7,AY484409,AY0994

96,EU450590,EF565

343,AY682996,HM00

9338,HQ738639,EF4

21969,DQ220736,JQ

390467,DQ861899,JF

690914,KF850458,G

U370064,HQ148879,

HM009337,DQ20164

0,AY256459,EF56535

9,KF850460,FJ87096

7,KF027494,JQ80946

3,FJ667585,AF26404

1,KF742549,KC8006

35,EU136718,FJ4263

98,EU274311,AY424

402,JX512853,KF850

466,AY682992,JQ181

586,DQ915586,FJ447

482,HQ202966,EU14

8507,FJ667589,EF67

5238,EU747085,JF69

0911,FN687850,EF42

1970,EF524542,AY59

6823,HM038025,AY3

21986,KC821781,AY

484413,EU521707,FJ

608542,FJ388889,GU

325770,KC688418,H

0395027,JF317567,H

M776445,HQ395040,

HM038027,HM77644

8,KF850464,KF74254

8,HM038029,FJ5944

71,JF827599,HQ2029

47,AY847748,AY035

820,AY510375,AB07

2301,KC823058,AY1

22275,AY325495,FJ6

60968,GU370063,JX

982227,FJ233905,DQ

195679,AF118095,H

0202952,HQ591372,

EU727546,JN133304,

FJ667588,HQ395030,

FJ660971,GU083583,

HM776446,KC75376

9,HQ395042,DQ8619

01,HQ395025,GU247

991,JX982221,EF675

240,EF565342,DQ86

1895,HQ831539,EF9

89713,KF732649,HQ

202964,EU547460,A

Y556473,AY686765,F

J608544,EU521709,H

0395046,EF675229,

EU909686,EU450584

,HQ831530,AF16652

8,HM161711,HQ5913

73,AY188355,AY641

542,GU450330,EF56

5349,EF675233,JF31

7572,JQ955679,FJ21

8002,EF565366,JX94

8779,FN687841,AF40

8635,HQ831535,HQ3

95031,FJ608547,DQ2

20739,JF290418,GUO

49340,GU325762,HM

003569,GQ449670,D

0201639,AF055391,

EU503034,AY874168

,EF524541,HM14289

6,JX512855,FJ66096

7,FJ712215,KC53381

2,FJ667582,EF39477

6,JQ181602,EU1367

19,DQ910866,HQ395

022,KC800638,EU54

5542,AY099500,EU5

47456,EF565365,EU

656143,KF871067,JF

317579,EU257516,K

C823059,EU257515,

EU780074,HQ395019

,HQ831534,HQ39502

3,EF421972,GQ3590

05,KF742546,JN1192

55,FJ667592,KC8594

51,EF524520,JX5128

60,FJ905461,JF3175

65,JQ181594,JF6827

92,GU325766,JX512

859,FJ644930,GU450

328,HQ395054,HQ83

1522,FJ158602,AY32

1997,JX193799,KC80

0637,HQ378158,EF4

52352,HQ591370,DQ

629118,JX506730,G

U325764,EU594440,

HM038020,JX948773

,HQ591367,KF37470

5,JX406420,HM6417

52,EU386606,HQ395

037,EU545550,HQ20

2955,DQ104419,HM7

76437,JX512857,EF5

65355,KF850468,AY4

84412,HQ831521,GU

083582,JF272497,HQ

395028,GQ358994,E

F421973,AF364094,H

M102350,EF592576,

DQ220729,JX948784

,FJ644558,HQ378159

,EF394774,FN687857

,HM003570,FR82345

1,EU136711,EF5653

63,FJ667586,KF8504

65,AY682990,HM038

028,EU148503,EF56

5350,EF452353,AF26

4038,EF524530,GQ3

58992,AY291318,AY

682995,EF565344,AY

943819,HQ113118,A

Y536756,EF565364,

DQ997816,JF690921,

HQ395051,EU909688

,EF524527,JX406425

,FN687842,JQ181601

,HQ202973,HM03801

9,KF695388,FN68785

5,EU391637,EU1367

14,EF524535,JN6398

57,HQ202961,FJ6445

61,JX945575,KC8217

84,EF565351,AB0723

03,HQ202950,AF154

679,AY291316,KF850

467,HM161710,JX94

8770,GQ358999,AY7

13470,KF027497,EF5

24515,JQ809462,AF2

01307,KF742553,GQ

404853,AF520783,AY

484416,JX948771,D

0180392,FJ716704,E

F524540,HQ591381,

GU808525,HQ59137

9,KF742547,HQ2029

44,FJ905460,JQ1816

05,JXQ99780,KC7537

71,EF210106,EU545

546,FN398025,EF458

306,EU136715,HQ20

2948,HQ395045,KC8

00643,AY321993,AF3

81177,AY686763,KC

823055,HQ113119,A

F264040,AY849938,

HQ395026,JQ181593

,GQ358996,AY39172

9,AY916791,GU3257

67,EU594438,HQ591

366,FJ644562,JF690

923,AY424401,EF524

523,AF201309,FJ660

969,HM038018,KC47

3167,JXQ99781,FJ87

0973,EU503036,DQ3

63860,HQ591380,HQ

591376,EF565356,JX

982223,FN398027,H

M776439,EU503031,

HM038026,GQ35900

9,FJ667593,AY75402

1,KC153106,JX40641

9,HM776447,FJ9054

71,JF690915,JQ1815

87,EF421968,HM038

032,KF742542,HQ83

1519,HQ395041,HQ3

95043,FJ598044,DQ9

15583,FJQ41151,EU1

48505,KC821783,JF6

90920,DQ220738,HM

038024,JF317566,AY

682994,AF381176,KF

926650,JF317571,DQ

629119,HQ831531,JF

690922,JQ002671,E

U503033,FJ667584,K

C533811,FJ608538,H

0202957,FJ608539,E

U450587,DQ870484,

JF682794,JF272499,

AY874166,JF317581,

GQ359006,HQ39506

0,FJ644923,FJ60854

6,GU325753,JX9487

72,AY256458,EF5653

61,EU545548,GQ359

004,HQ378161,FJ158

603,HQ395039,HQ39

5048,JX948783,KF02

7493,EF565358,AY60

4430,AM086384,AY3

21988,FJ483938,KC7

88504,HM038022,GU

244507,FJ644926,EF

524531,DQ233257,J

0994268,DQ220732,

EF493840,FJ644919,

EU921257,JF317577,

GU325765,DQ14132

2,DQ478947,AY1469

92,DQ629116,HM623

764,EF524516,KC83

5193,AY099499,EU3

40258,JQ181592,AY3

21999,GQ359007,KC

447454,EU921255,FJ

644931,HQ202953,E

F565345,EU647557,

HQ395038,JF928003,

HM142895,HM14289

7,JF682791,HQ20295

8,JF690912,EU36632

4,DQ923524,KF8504

61,DQ220733,FJ9054

66,AY146991,EU503

037,FN687844,FJ644

928,EF675235,JXQ99

785,FJ712216,DQ206

444,FJ644920,EF565

362,HQ395032,AY53

6755,AB426905,HQ4

02903,AF085695,HQ

591368,FJ644925,HQ

831524,JF928006,JX

948780,AY256457,D

0997815,JN639856,

DQ915587,DQ64803

1,KF850469,HQ8315

20,HQ831526,HM038

030,EF524529,HQ39

5029,EU366323,AY1

46993,FJ158607,FN3

98022,EU302141,EU

418626,JQ181597,AY

321985,HQ395036,A

Y754019,JF272498,A

F147751,DQ017036,

FJ667594,HQ202965,

AY754017,HQ591378

,JX948768,FJ501957,

KC753770,GU325758

,AF264039,AY288134

,GQ359008,AY68299

1,HQ202945,KF0274

92,FJ608548,JF6827

93,EU547458,AY094

619,HQ395021,JX98

2226,HQ395056,AF2

64043,HM038016,EF

675239,EU886637,FJ

905469,HQ395052,A

Y874164,DQ220730,

AY484407,FN398023

,AY322002,GU32575

6,EU274310,HM0380

31,KF742551,AY6997

93,AY322000,GU049

341,HQ395020,AY18

0397,HM776452,GU2

52370,JF690919,GU2

33804,HQ395035,AY

484411,HF542107,G

U001710,KF027495,

HQ831527,FJ905464,

AY556475,EU545549

,JF928004,EF394777

,EF675242,FJ598045

,AF538325,KC80064

6,AF465211,JQ18159

8,EF515839,JQ18160

4,EU503038,JX94877

6,AJ293868,JX98222

5,EU366325,DQ8618

96,HQ202954,AY874

165,DQ923523,AY25

6456,EF565352,AY32

2003,KC835192,JQ9

94270,EU450585,AY

291317,FN687845,JX

534237,EF524532,G

0449672,GU938303,

EF394779,DQ915588

,EU257513,JF317585

,AY484415,HQ39504

9,FJ644555,HQ20296

8,HM776443,JX9455

77,AY682993,AY556

474,AY217743,JF317

586,AY256455,GQ35

8995,JF317582,AY29

4310,AY613854,FN6

87846,JQ692110,FJ6

44924,KC860786,AJ2

23185,KC800645,HQ

395058,JQ413808,AF

201306,DQ629117,H

0831523,FJ870975,K

C336418,JQ002672,

AY321984,EU257514

,EU340257,EF52453

7,FJ870968,EU52170

8,KC835194,EU2743

9,KC821782,FJ6445

57,JN615187,GQ359

010,KC800639,HM03

8033,KC684978,FN6

87843,FJ667587,JX9

48786,DQ180393,HQ

202956,HM038023,D

0104422,AB072302,J

0181591,FJ870976,A

Y651850,EF524538,

DQ915584,AY556477

,FN687854,AY69167

9,DQ201642,EF5653

67,FJ644921,FJ4403

38,HQ202960,EF394

778,EU545545,EU30

2139,AY874167,DQ8

61900,AY099498,AF0

55393,KF742541,KC

788505,EU136713,H

0202962,FJ667583,A

Y754022,AY732494,

GU247989,KC907703

,EF394775,HQ59137

4,FJ644932,EF56535

3,EU545543,JX29471

7,EU274312,AY1776

26,JQ181606,EU547

457,EF524533,GU93

8304,HQ395061,FJ87

0972,AY099497,EF67

5236,GU325763,HQ2

02959,EU148506,JF9

28005,EU302140,EU

418627,AY754018,EF

675244,HQ202946,H

0831540,EF421971,J

N660055,AY678532,

HQ591369,HM77645

3,AY181947,JQ18160

3,EU503035,FJ90546

7,DQ346683,AY2881

33,DQ104421,KF742

552,JF317570,JX948

777,EF493839,JX982

224,KC823054,JX982

219,JF718784,HQ395

057,GU001709,FJ667

596,AY321982,JX945

576,EF565357,EF524

534,HQ113120,HQ39

5034,HQ831525,FN6

87856,GQ174519,EF

524526,AY321991,H

0831536,JF317569,J

N388690,JF317574,D

0355153,FJ667591,H

M776438,GQ359002,

HQ202970,JQ181590

,AF201308,AY969004

,HQ113117,HM77645

0,KF742540,HQ2029

67,EF493838,JX5352

97,JF317575,AF3811

75,JX534236,JX9487

82,EU503032,FJ2339

10,KC336417,EU450

588,AY874163,JXQ99

782,FJ667595,HQ738

641,EU136716,JF317

580,GU325769,AY48

4410,DQ861897,KC4

73168,AY321992,KC

835191,EF675230,FN

398026,AY874169,G

0358998,KC835190,

JQ181589,JQ181599,

GU247988,AY754016

,EF592575,HQ20294

9,FJ644559,EF56535

4,FN687847,AF20189

7,EF493837,JX94878

5,FN687849,JX91291

5,AF201311,AY32199

4,EF524522,JX94878

1,AY181948,GU3257

61,AF055392,GU325

757,EF675243,JQ181

600,JXQ99786,FJ218

000,DQ201641,EU78

0073,HQ202969,EF6

75234,JF690916,KC2

49977,GQ359003,JX

948769,JF928002,G

0404852,JX519293,A

Y099495,JN176181,K

C835189,JQ181585,

DQ997817,FJ667590,

JX406421,EF675237,

GUO17735,DQ62911

3,FJ644556,AY59682

2,FJ998185,HQ83153

2,HQ650833,AY4844

08,FJ608543,JX2043

86,FJ644922,DQ2207

31,FN687840,FJ6449

29,HM027580,KF742

550,GU124593,DQ22

0727,EU450586,KC6

18389,JF317588,FJ1

58604,AY181946,FJ6

08540,FN687851,GQ

449669,HQ831533,E

U283329,KC800636,

AF264042,GQ915288

,EU594439,HQ39504

7,EF421967,JF31758

4,JQ809464,HQ8315

37,FJ870969,EU5554

39,JQ181596,EF6752

41,JF690917,FN6878

52,FJ644563,AY3219

89,KF742543,KF0274

96,GQ911590,HM776

451,HMO38021,HQ39

5050,AY579893,JF31

7583,EU921254,HM7

76444,HM776449,EF

524524,FJ608541,FJ

644560,GQ227412,H

0202951,HQ591377,

KC788503,JQ181588

,JF317587,KF742544

,JF899334,HQ202971

,JX982228,JX406423,

GU247992,AY321996

,GQ359011,HQ69309

2,GQ359000,AF0868

36,JX274295,EF5653

46,DQ220737,DQ629

115,JQ181595,DQ10

4420,HM142898,FJ1

58606,JX982220,HQ

202963,AF201310,K

C188796,AJ293867,E

F524518,AY578327,

HQ395053,AJ293869

,HQ395024,EU45058

9,AY322001,KC8006

41,DQ861898,HM142

894,KF742545,DQ86

1902,JF317573,HQ59

1371,JF317576,FJ60

8545,EU545551,GU3

25759,EF675231,FN6

87848,JQ994269,EU

095020,EU420015,JX

406422,DQ220728,H

M027579,GU325760,

HQ591375,EU346945

,EU594437,AY32199

8,KC751546,EF4938

41,JXQ99783,JQ6534

49,DQ915585,AY686

762,EU589463,HQ39

5059,FJ905462,EU50

3039,GU247990,FJ23

3906,EF565348,EU4

50592,EU547459,HQ

713495,EU257511,A

F454546,AF201305,

GQ915289,HQ83152

8,GU938302,GQ3589

93,EF675232,KC753

772,FJ233909,AY321

983,EF565360,JX512

858,JXQ99784,EU126

887,KC823056,AY32

2004,EU408780,FJ90

5463,JX406426,EU68

4164,FJ233907,EU54

5547,AY691169,KC7

53768,DQ629114,AY

484414,KC733435,K

F850463,HM142899,

FJ233908,GQ358997

,GU252369,KC47316

5,AF118097,AY18039

6,FJ623185,EU13671

2,AY424404,HQ3781

60,KC688419,EF524

536,KC527542,JX948

778,DQ220734,EU13

6720,KC823053,JX40

6424,AY288135,EF52

4521,JX948774,HQ3

95033,HQ202972,EU

450591,EF524539,EF

565368,DQ364650,D

0151643,DQ322701,

FJ608549,GU325754,

AY424403,FJ935780,

KF027491,HM776442

,JF317568,KC821785

,KF850462,GU32575

5,FJ158605,EF61903

7,JX512856,JF69091

8,FJ870970,FN39802

4,EU545544,KC8006

34,HM142900,AY256

460,FJ905465,AY682

997,AF027217,FJ644

927,HM038034,AY32

1990,FJ905459,HQ73

8640,HM776441,AY6

86764,EU503040,JX5

12854,FN687853,EFS

24525,EU136717,EF

452351,GU247987,A

F086835,JQ181607,E

U909687,KC823057,

AY321987,KF850459,

HQ113121,JN119257

,KF871068,HQ83153

8,DQ220735,AF0868

34,KC800644,AY754

020,FJ948168,DQ104

423,JF317578,AY556

476,HQ693093,FJ905

470,GU450327,EU92

1256,HQ591365,AY3

21995,KC473166,EU

257512,GQ996404,G

Q359001,EU366326,

FJ870974,HQ395055,

GU244506,HM77644

0,EU886638,AF0553

94,JX535296,JN1192

56,GU450329,HM038

017,FJ716703,AF544

024,JF317589,FJ218

001,AY181945,AY42

4405,JF690913,EF49

3842,GU325768,GUO

49342,FJ804417,HQ3

95044,HM009336

Porcine circovirus 2
NC_005148
vertebrates
1
Circoviridae,Circovirus,Porcine circovirus 2
—
EU057185

P0404c/03

Porcine circovirus 2
NC_005148
vertebrates
1
Circoviridae,Circovirus,Porcine circovirus 2
—
EU057189

R0255/209/03

Porcine circovirus 2
NC_005148
vertebrates
1
Circoviridae,Circovirus,Porcine circovirus 2
—
EU057188

S0255/210/03

Porcine circovirus 2
NC_005148
vertebrates
1
Circoviridae,Circovirus,Porcine circovirus 2
—
EU057186

T0181c/03

Porcine circovirus 2
NC_005148
vertebrates
1
Circoviridae,Circovirus,Porcine circovirus 2
—
EU057187

U0168/03

Porcine circovirus 2
NC_005148
vertebrates
1
Circoviridae,Circovirus,Porcine circovirus 2
—
EU057184

Z0161 b/03

Porcine circovirus 2 strain
NC_005148
vertebrates
1
Circoviridae,Circovirus,Porcine circovirus 2
—
DQ218419

SD3

Porcine circovirus 2 strain
NC_005148
vertebrates
1
Circoviridae,Circovirus,Porcine circovirus 2
—
DQ218420

SDS

Porcine circovirus 2 strain
NC_005148
vertebrates
1
Circoviridae,Circovirus,Porcine circovirus 2
—
DQ218421

SD6

Porcine circovirus type 1/2a
NC_013774
vertebrates
1
Circoviridae,Circovirus,Porcine circovirus type
—
FJ655418

1/2a

Porcine circovirus type 2-B
NC_005148
vertebrates
4
Circoviridae,Circovirus,Porcine circovirus 2
—
KC261601,KC261600

,AF112862,GU79957

6

Porcine circovirus type 2-C
NC_005148
vertebrates
1
Circoviridae,Circovirus,Porcine circovirus 2
—
AF109398

Porcine circovirus type 2-D
NC_005148
vertebrates
1
Circoviridae,Circovirus,Porcine circovirus 2
—
AF117753

Porcine circovirus type 2-E
NC_005148
vertebrates
1
Circoviridae,Circovirus,Porcine circovirus 2
—
AF109399

Porcine coronavirus
NC_016990
vertebrates
2
Coronaviridae, Deltacoronavirus, Porcine
—
JQ065043,JQ065042

HKU15

coronavirus HKU15

Porcine cytomegalovirus
NC_022233
vertebrates
1
H erpesviridae,Cytomegalovirus, Porcine
—
KF017583

cytomegalovirus

Porcine
NC_001479
vertebrates
2
Picornaviridae,Cardiovirus,Encephalomyocard

DQ517424,HM64189

encephalomyocarditis virus

itis virus

7

Porcine endogenous
NC_003059
vertebrates
5
Retroviridae,Gammaretrovirus,Porcine type-C
—
EU523109,A66553,A

retrovirus

oncovirus

XQ52638,A66552,AX

175461

Porcine endogenous
NC_003059
vertebrates
2
Retroviridae,Gammaretrovirus,Porcine type-C
—
EF133960,HM159246

retrovirus C

oncovirus

Porcine endogenous
NC_003059
vertebrates
2
Retroviridae,Gammaretrovirus,Porcine type-C
—
AY953542,AY570980

retrovirus C/A

oncovirus

Porcine endogenous
NC_003059
vertebrates
1
Retroviridae,Gammaretrovirus,Porcine type-C
—
AF356697

retrovirus E

oncovirus

Porcine enterovirus 10
NC_004441
vertebrates
1
Picornaviridae,Enterovirus,Enterovirus G
—
AF363455

Porcine enterovirus 15
NC_004441
vertebrates
1
Picornaviridae,Enterovirus,Enterovirus G
—
JN807387

Porcine enterovirus 3H
NC_004441
vertebrates
1
Picornaviridae,Enterovirus,Enterovirus G
—
HQ702854

Porcine enterovirus 9
NC_004441
vertebrates
2
Picornaviridae,Enterovirus,Enterovirus G
—
Y14459,HM131607

Porcine enterovirus B
NC_004441
vertebrates
2
Picornaviridae,Enterovirus,Enterovirus G
—
AF363453,JQ818253

Porcine epidemic diarrhea
NC_003436
vertebrates
32
Coronaviridae,Alphacoronavirus,Porcine
—
KF272920,KF650374,

virus

epidemic diarrhea virus

KF650372,KC140102

,JQ282909,EF185992

,KC210145,KF46875

2,KC210147,KF6503

71,KC109141,JN5472

28,JX112709,KF4687

53,JX524137,JX5607

61,KC196276,KC189

944,JX188454,KC210

146,JX489155,JXQ88

695,KF650370,KF384

500,JX261936,KF650

375,AF353511,KF650

373,KF468754,JN825

712,GU937797,KF26

7450

Porcine kobuvirus
NC_011829
vertebrates
9
Picornaviridae,Kobuvirus,Aichivirus C
—
KC424638,JX401523,

,NC_01676

JX177612,KC424639,

9

KF695124,KC204684

,JQ692069,KC42464

0,JX827598

Porcine kobuvirus swine/K-
NC_011829
vertebrates
1
Picornaviridae,Kobuvirus,Aichivirus C
—
GQ249161

30-HUN/2008/HUN
,NC_01676

9

Porcine kobuvirus swine/S-
NC_011829
vertebrates
1
Picornaviridae,Kobuvirus,Aichivirus C
—
EU787450

1-HUN/2007/H ungary
,NC_01676

9

Porcine partetravirus
NC_022104
vertebrates
1
Parvoviridae,Porcine partetravirus
—
KC992732

Porcine parvovirus
NC_001718
vertebrates
26
Parvoviridae,Parvovirus,Porcine parvovirus
—
KF913346,KF913348,

KF429253,AY684869,

EU790641,JN872448,

M38367,L23427,JX99

2846,KF913345,KF91

3349,U44978,KF9133

47,KF913351,AY5833

18,KF429252,EU790

642,FJ822038,DQ675

456,KF913350,DQ062

3,JN968975,KF42925

5,KF742500,HM9890

09,KF429254

Porcine parvovirus 4
NC_014665
vertebrates
9
Parvoviridae,Parvovirus,Porcine parvovirus 4
—
GQ387500,GU97896

5,GU978968,HM0311

34,GU978966,GU978

967,GQ387499,GU97

8964,HM031135

Porcine parvovirus 5
NC_023020
vertebrates
6
Parvoviridae,Parvovirus,Porcine parvovirus 5
—
JX896320,KF661535,

JX896322,JX896319,

JX896321,JX896318

Porcine pestivirus isolate
NC_023176
vertebrates
1
Flaviviridae,Pestivirus,Porcine pestivirus
—
EF100713

Bungowannah

isolate Bungowannah

Porcine reovirus SHR-A
NC_004274
vertebrates
1
Reoviridae,Orthoreovirus,Mammalian
seg.
JX415472

orthoreovirus
L3

Porcine reovirus SHR-A
NC_004275
vertebrates
1
Reoviridae,Orthoreovirus,Mammalian
seg.
JX415467

orthoreovirus
L2

Porcine reovirus SHR-A
NC_004276
vertebrates
1
Reoviridae,Orthoreovirus,Mammalian
seg.
JX415473

orthoreovirus
S4

Porcine reovirus SHR-A
NC_004277
vertebrates
1
Reoviridae,Orthoreovirus,Mammalian
seg.
JX415469

orthoreovirus
S1

Porcine reovirus SHR-A
NC_004278
vertebrates
1
Reoviridae,Orthoreovirus,Mammalian
seg.
JX415471

orthoreovirus
M2

Porcine reovirus SHR-A
NC_004279
vertebrates
1
Reoviridae,Orthoreovirus,Mammalian
seg.
JX415465

orthoreovirus
S2

Porcine reovirus SHR-A
NC_004280
vertebrates
1
Reoviridae,Orthoreovirus,Mammalian
seg.
JX415468

orthoreovirus
M1

Porcine reovirus SHR-A
NC_004281
vertebrates
1
Reoviridae,Orthoreovirus,Mammalian
seg.
JX415474

orthoreovirus
M3

Porcine reovirus SHR-A
NC_004282
vertebrates
1
Reoviridae,Orthoreovirus,Mammalian
seg.
JX415466

orthoreovirus
L1

Porcine reovirus SHR-A
NC_004283
vertebrates
1
Reoviridae,Orthoreovirus,Mammalian
seg.
JX415470

orthoreovirus
S3

Porcine reovirus SHR-A
NC_013228
vertebrates
1
Reoviridae,Orthoreovirus,Mammalian
seg.
JX415471

orthoreovirus
M2

Porcine reovirus SHR-A
NC_013230
vertebrates
1
Reoviridae,Orthoreovirus,Mammalian
seg.
JX415474

orthoreovirus
M3

Porcine reovirus SHR-A
NC_013232
vertebrates
1
Reoviridae,Orthoreovirus,Mammalian
seg.
JX415465

orthoreovirus
S2

Porcine reovirus SHR-A
NC_013234
vertebrates
1
Reoviridae,Orthoreovirus,Mammalian
seg.
JX415473

orthoreovirus
S4

Porcine reproductive and
NC_001961
vertebrates
327
Arteriviridae,Arterivirus, Porcine reproductive
—
HQ843178,JQ663542

respiratory syndrome virus

and respiratory syndrome virus

,JQ663545,GU73726

4,FJ950746,EU26260

3,KF287142,EF51796

2,EU200962,JQ3098

22,JQ308798,FJ9507

47,HQ699067,KC422

730,KC862570,DQ17

6020,KC862567,HM2

14915,JX192638,GU

047344,EU880438,J

0326271,KF287133,

GU168568,EU187484

,JN660150,JX192637

,GU143913,JX31764

8,EU880436,EF5360

00,JQ663561,EU200

961,JF268681,DQ459

471,KC862574,GQ47

5526,HQ315836,EU1

06888,KC492506,JQ

663541,EU864232,E

U097707,EF484031,

KC422725,GU168567

,GQ914997,KF28713

4,JN662424,FJ39345

8,AY612613,KF28713

9,JF800911,JQ66355

8,JQ663544,AF32569

1,JQ663563,EU8804

37,EF532802,GU454

850,FJ393456,JQ663

547,JQ663568,FJ349

261,JX215553,JX878

379,EF536001,JX215

554,KC862573,KF28

7135,KF555450,KF28

7137,EU880435,EU7

08726,JF796180,JX2

58843,JQ663546,KF2

87132,EF532805,KC

422729,JQ955657,D

0176021,JQ715698,

GU232738,HM18967

6,KC862577,KC4227

28,FJ548855,FJ3934

59,HQ843180,EF532

801,EF484033,EU88

0434,EF535999,JQ66

3566,EU807840,EF5

36002,JQ663567,EU

880442,KC469618,J

0804986,JF268674,E

F112445,DQ473474,

KC862566,EU109503

,EF532806,EF641008

,EU864231,KC49250

5,JQ663553,EU2362

59,EF488739,DQ864

705,JQ663551,JX192

635,EU880431,JQ66

3549,JX235365,FJ17

5687,AF184212,JX17

7644,EU360130,JX31

7649,KC862579,EU1

09502,EF112446,EF5

32810,EF532813,KC

862584,AF494042,EF

532819,EU939312,A

Y424271,HM016158,

AF066183,KF203132,

EF153486,GQ359108

,JQ663555,JN864948

,GU169411,JF268673

,DQ988080,JQ66356

4,AY032626,KC8625

75,JF268683,KC8625

76,FJ895329,AY3665

25,JQ663540,GQ374

441,DQ056373,EU07

6704,HQ233604,JQ6

63556,GQ374442,KF

632717,JN654459,JQ

309823,GU269541,FJ

548851,EU678352,JX

215552,JX217036,FJ

950744,JF268680,JX

857698,EU880433,E

F075945,JX512910,J

X235367,JQ087873,K

F555451,JQ663565,K

C862583,EF532804,

EU360129,EU860249

,FJ393457,JN387272,

GQ351601,AY150564

,KF611905,JQ663562

,GU232737,JN62628

7,HM011104,GU1685

69,KC862581,EF532

807,EF532811,JX192

633,HQ233605,GU23

2735,JN387274,DQ2

17415,EU860248,JF2

68676,JQ663543,DO

779791,EF532818,EF

532808,KF287138,KF

815525,FJ950745,AB

288356,GQ461593,G

U232736,GU461292,

JXQ87437,JQ663560,

JX235370,JQ663548,

KC862572,HM01615

9,KF287136,FJ54885

4,EU880439,KC8625

69,EF635006,AY5459

85,JX215551,FJ8891

29,DQ489311,JF2686

78,AF159149,JF2686

72,EU880443,KC422

727,GQ499193,AF33

1831,FJ524376,EU86

4233,JN387273,DQ1

76019,JQ663559,HQ

315835,FJ548852,JF

268684,FJ175689,H

M853673,KC862585,

EU880441,KC527830

,EF532816,JF268677

,FJ899592,EF112447

,HM214913,U87392,

KC862568,GQ49919

6,FJ536165,JF26868

2,KC445138,EF5328

09,JF268675,GQ857

656,JF802085,JX878

380,EU825724,JX192

634,JX235366,HQ84

3179,JN256115,KC42

2731,JQ743666,JX19

2639,FJ797690,KC86

2571,HQ315837,FJ88

9130,EU097706,HQ8

43181,FJ548853,EF5

36003,KF287143,GQ

499195,EF532812,K

C492504,JN387271,K

C862580,JN654458,J

X192636,JQ663554,E

F532815,JXQ44140,A

F176348,GU067771,J

0663550,JF748717,J

0663552,KC422726,

EF532817,JX912249,

HM214914,JX880029

,JX192632,JF268679,

EU144079,JQ955658

,EU825723,GQ49919

4,EF488048,JQ71569

7,EU360128,KF2871

41,AY585241,FJ5243

77,FJ394029,KC8625

78,FJ175688,KC8625

82,EU880432,AF046

869,EF532803,JF748

718,GQ330474,EF53

2814,EU880440,KF2

87140,GUO47345,HQ

401282,JQ663557,E

U624117

Porcine sapelovirus
NC_003987
vertebrates
3
Picornaviridae,Sapelovirus,Porcine
—
HQ875059,KF539414

sapelovirus

,JX286666

Porcine sapelovirus 1
NC_003987
vertebrates
1
Picornaviridae,Sapelovirus,Porcine
—
AF406813

sapelovirus

Porcine teschovirus
NC_003985
vertebrates
30
Picornaviridae,Teschovirus, Porcine
—
AF296102,GQ914053

teschovirus

,AF231769,AF296118

,AF296111,AF296112

,AF296113,HQ02037

8,AF296107,AF29609

2,AF296103,AF29611

5,KC667563,JQ4294

05,AF296089,AF2960

91,GU446660,AF231

767,AF296090,AF296

109,AF296104,AF231

768,AJQ11380,AF296

100,DQ355222,AF29

6087,AF296088,AF29

6117,KC667562,AF2

96108

Porcine teschovirus 1
NC_003985
vertebrates
1
Picornaviridae,Teschovirus, Porcine
—
AB038528

teschovirus

Porcine teschovirus 10
NC_003985
vertebrates
2
Picornaviridae,Teschovirus, Porcine
—
AF296119,AF296095

teschovirus

Porcine teschovirus 11
NC_003985
vertebrates
1
Picornaviridae,Teschovirus, Porcine
—
AF296096

teschovirus

Porcine teschovirus 4
NC_003985
vertebrates
1
Picornaviridae,Teschovirus, Porcine
—
JQ975417

teschovirus

Porcine teschovirus 8
NC_003985
vertebrates
5
Picornaviridae,Teschovirus, Porcine
—
JQ664746,GQ293092

teschovirus

,KC757344,AF29609

3,JN710381

Porcine teschovirus 9
NC_003985
vertebrates
1
Picornaviridae,Teschovirus, Porcine
—
AF296094

teschovirus

Porcine torovirus
NC_022787
vertebrates
1
Coronaviridae,Torovirus,Porcine torovirus
—
JQ860350

Possum enterovirus W1
NC_008714
vertebrates
1
Picornaviridae,Enterovirus,Possum
—
AY462106

enterovirus W1

Possum enterovirus W6
NC_008715
vertebrates
1
Picornaviridae,Enterovirus,Possum
—
AY462107

enterovirus W6

PreXMRV-1
NC_007815
vertebrates
1
Retroviridae,Gammaretrovirus,Murine
—
FR871849

leukemia-related retroviruses

Procyon lotor
NC_007150
vertebrates
1
Papillomaviridae,Lambdapapillomavirus,Lamb
—
AY763115

papillomavirus 1

dapapillomavirus 4

Pseudocowpox virus
NC_013804
vertebrates
2
Poxviridae,Parapoxvirus,Pseudocowpox virus
—
GQ329670,GQ32966

9

Psittacid herpesvirus 1
NC_005264
vertebrates
1
Herpesviridae,Iltovirus,Psittacid herpesvirus 1
—
AY372243

Psittacus erithacus timneh
NC_003973
vertebrates
2
Papillomaviridae,Thetapapillomavirus,Thetapa
—
AF502599,AF420235

papillomavirus

pillomavirus 1

Pteronotus polyomavirus
NC_020070
vertebrates
1
Polyomaviridae,Polyomavirus,Pteronotus
—
JX520662

polyomavirus

Puma concolor
NC_004765
vertebrates
1
Papillomaviridae,Lambdapapillomavirus,Lamb
—
AY904723

papillomavirus type 1

dapapillomavirus 1

Pygmy chimpanzee
NC_001355
vertebrates
1
Papillomaviridae,Alphapapillomavirus,Alphapa
—
X62844

papillomavirus type 1

pillomavirus 10

Quail picornavirus
NC_016403
vertebrates
1
Picornaviridae, Quail picornavirus
—
JN674502

QPV1/HUN/2010

QPV1/HUN/2010

RD114 retrovirus
NC_009889
vertebrates
2
Retroviridae,Gammaretrovirus,RD114
—
AB559882,EU030001

retrovirus

Rabbit calicivirus Australia
NC_011704
vertebrates
1
Caliciviridae,Lagovirus,Rabbit calicivirus
—
EU871528

1 MIC-07

Australia 1 MIC-07

Rabbit coronavirus HKU14
NC_017083
vertebrates
4
Coronaviridae,Betacoronavirus,Rabbit
—
JN874559,JN874562,

coronavirus HKU14

JN874561,JN874560

Rabbit fibroma virus
NC_001266
vertebrates
1
Poxviridae,Leporipoxvirus,Rabbit fibroma virus
—
AF170722

Rabbit hemorrhagic
NC_001543
vertebrates
35
Caliciviridae,Lagovirus,Rabbit hemorrhagic
—
DQ280493,EF363035

disease virus

disease virus

,EF558586,DQ18907

7,JX886001,AB30069

3,EF558576,EF55858

2,M67473,KC595270,

DQ189078,EU003579

,EF558572,EF558578

,EF558580,EF558574

,AF295785,EF558577

,AY523410,HM62330

9,EU003582,EF5585

85,EU003578,AF258

618,DQ205345,EU00

3581,EF558584,EU0

03580,EF558579,JF4

12629,EF558575,EF5

58581,EF558573,EF5

58583,JX886002

Rabbit hemorrhagic
NC_001543
vertebrates
1
Caliciviridae,Lagovirus,Rabbit hemorrhagic
—
Z49271

disease virus-AST89

disease virus

Rabbit hemorrhagic
NC_001543
vertebrates
1
Caliciviridae,Lagovirus,Rabbit hemorrhagic
—
X87607

disease virus-BS89

disease virus

Rabbit hemorrhagic
NC_001543
vertebrates
1
Caliciviridae,Lagovirus,Rabbit hemorrhagic
—
Z29514

disease virus-SD

disease virus

Rabbit hemorrhagic
NC_001543
vertebrates
1
Caliciviridae,Lagovirus,Rabbit hemorrhagic
—
U54983

disease virus-V351

disease virus

Rabbit oral papillomavirus
NC_002232
vertebrates
1
Papillomaviridae,Kappapapillomavirus,Kappap
—
AF227240

apillomavirus 1

Rabbit vesivirus
NC_008580
vertebrates
1
Caliciviridae,Vesivirus,Rabbit vesivirus
—
AJ866991

Rana grylio iridovirus
NC_005946
vertebrates
1
Indoviridae,Ranavirus,Frog virus 3
—
JQ654586

Rangifer tarandus
NC_021930
vertebrates
1
Papillomaviridae,Rangifer tarandus
—
KC810012

papillomavirus 2

papillomavirus 2

Ranid herpesvirus 1
NC_008211
vertebrates
1
Alloherpesviridae,Batrachovirus,Ranid
—
DQ665917

herpesvirus 1

Ranid herpesvirus 2
NC_008210
vertebrates
1
Alloherpesviridae,Batrachovirus,Ranid
—
DQ665652

herpesvirus 2

Raptor adenovirus A
NC_015455
vertebrates
1
Adenoviridae,Siadenovirus,Raptor adenovirus
—
EU715130

A

Rat coronavirus
NC_012936
vertebrates
2
Coronaviridae,Betacoronavirus,Murine
—
JF792616,JF792617

,NC_00184

coronavirus

6

Rat coronavirus Parker
NC_012936
vertebrates
1
Coronaviridae,Betacoronavirus,Murine
—
FJ938068

,NC_00184

coronavirus

6

Rat theilovirus 1
NC_009448
vertebrates
2
Picornaviridae,Cardiovirus,Theilovirus
—
EU542581,EU815052

,NC_00136

6,NC_0108

10

Rattus norvegicus
NC_008519
vertebrates
1
Papillomaviridae,Pipapillomavirus,Pipapilloma
—
GQ180114

papillomavirus 1 EES-2009

virus 1

Raven circovirus
NC_008375
vertebrates
1
Circoviridae,Circovirus,Raven circovirus
—
DQ146997

Redspotted grouper
NC_008040
vertebrates
5
Nodaviridae,Betanodavirus,Redspotted
seg.
GQ402010,AY324869

nervous necrosis virus

grouper nervous necrosis virus
RNA 1
,AY369136,GQ40201

2,EF558368

Redspotted grouper
NC_008041
vertebrates
6
Nodaviridae,Betanodavirus,Redspotted
seg.
AY744705,AY324870

nervous necrosis virus

grouper nervous necrosis virus
RNA 2
,GQ402011,EF55836

9,AY690596,GQ4020

13

Reindeer papillomavirus
NC_001524
vertebrates
1
Papillomaviridae,Deltapapillomavirus,Deltapap
—
AF443292

illomavirus 1

Reovirus sp,T2W
NC_004276
vertebrates
1
Reoviridae,Orthoreovirus,Mammalian
seg.
DQ220019

orthoreovirus
S4

Reovirus sp,T2W
NC_004277
vertebrates
1
Reoviridae,Orthoreovirus,Mammalian
seg.
DQ220017

orthoreovirus
S1

Reovirus sp,T2W
NC_004279
vertebrates
1
Reoviridae,Orthoreovirus,Mammalian
seg.
DQ220020

orthoreovirus
S2

Reovirus sp,T2W
NC_004283
vertebrates
1
Reoviridae,Orthoreovirus,Mammalian
seg.
DQ220018

orthoreovirus
S3

Reovirus sp,T2W
NC_013232
vertebrates
1
Reoviridae,Orthoreovirus,Mammalian
seg.
DQ220020

orthoreovirus
S2

Reovirus sp,T2W
NC_013234
vertebrates
1
Reoviridae,Orthoreovirus,Mammalian
seg.
DQ220019

orthoreovirus
S4

Reovirus sp,T3C43-MA
NC_004277
vertebrates
1
Reoviridae,Orthoreovirus,Mammalian
seg.
U74293

orthoreovirus
S1

Reovirus sp,T3C44-MA
NC_004277
vertebrates
1
Reoviridae,Orthoreovirus,Mammalian
seg.
U74292

orthoreovirus
S1

Reovirus sp,T3C84-MA
NC_004277
vertebrates
1
Reoviridae,Orthoreovirus,Mammalian
seg.
U74291

orthoreovirus
S1

Reptile vesivirus Crol
NC_002551
vertebrates
1
Caliciviridae,Vesivirus,Vesicular exanthema of
—
JXQ47864

swine virus

Reticuloendotheliosis virus
NC_006934
vertebrates
10
Retroviridae,Gammaretrovirus,Reticuloendoth
—
FJ496333,FJ439119,

eliosis virus

DQ003591,DQ38745

0,FJ439120,JX91271

0,GQ375848,GQ4156

46,KF305089,AY8429

51

Rhesus monkey
NC_001678
vertebrates
1
Papillomaviridae,Alphapapillomavirus,Alphapa
—
M60184

papillomavirus 1

pillomavirus 12

Rhesus monkey
NC_003401
vertebrates
1
Herpesviridae,Rhadinovirus,Macacine
—
AF210726

rhadinovirus H26-95

herpesvirus 5

Rhesus papillomavirus type
NC_001678
vertebrates
2
Papillomaviridae,Alphapapillomavirus,Alphapa
—
EF591300,FJ598133

1b

pillomavirus 12

Rhinolophus bat
NC_009988
vertebrates
4
Coronaviridae,Alphacoronavirus,Rhinolophus
—
EF203066,EF203065,

coronavirus HKU2

bat coronavirus HKU2

EF203067,EF203064

Rhinovirus C
NC_009996
vertebrates
3
Picornaviridae,Enterovirus,Rhinovirus C
—
GQ223228,JXQ74056

,GQ223227

Rock bream iridovirus
NC_003494
vertebrates
2
Incloviridae,Megalocytivirus,Infectious spleen
—
KC244182,AY532606

and kidney necrosis virus

Rodent herpesvirus Peru
NC_015049
vertebrates
2
Herpesviridae,Rodent herpesvirus Peru
—
HQ698924,HQ22196

3

Rodent pegivirus
NC_021154
vertebrates
1
Flaviviridae,Pegivirus,Rodent pegivirus
—
KC815311

Ross's goose hepatitis B
NC_005888
vertebrates
3
Hepadnaviridae, Ross's goose hepatitis B
—
AY494849,AY494848

virus
,NC_005950

virus

,M95589

Rotavirus D
NC_014511
vertebrates
1
Reoviridae,Rotavirus,Rotavirus D
seg. 1
GU733443

chicken/05V0049/DEU/2005

Rotavirus D
NC_014512
vertebrates
1
Reoviridae,Rotavirus,Rotavirus D
seg. 2
GU733444

chicken/05V0049/DEU/2005

Rotavirus D
NC_014513
vertebrates
1
Reoviridae,Rotavirus,Rotavirus D
seg. 3
GU733445

chicken/05V0049/DEU/2005

Rotavirus D
NC_014514
vertebrates
1
Reoviridae,Rotavirus,Rotavirus D
seg. 4
GU733446

chicken/05V0049/DEU/2005

Rotavirus D
NC_014515
vertebrates
1
Reoviridae,Rotavirus,Rotavirus D
seg. 5
GU733447

chicken/05V0049/DEU/2005

Rotavirus D
NC_014516
vertebrates
1
Reoviridae,Rotavirus,Rotavirus D
seg. 6
GU733448

chicken/05V0049/DEU/2005

Rotavirus D
NC_014517
vertebrates
1
Reoviridae,Rotavirus,Rotavirus D
seg. 7
GU733449

chicken/05V0049/DEU/2005

Rotavirus D
NC_014518
vertebrates
1
Reoviridae,Rotavirus,Rotavirus D
seg. 8
GU733450

chicken/05V0049/DEU/2005

Rotavirus D
NC_014519
vertebrates
1
Reoviridae,Rotavirus,Rotavirus D
seg. 9
GU733451

chicken/05V0049/DEU/2005

Rotavirus D
NC_014520
vertebrates
1
Reoviridae,Rotavirus,Rotavirus D
seg.
GU733452

chicken/05V0049/DEU/2005

10

Rotavirus D
NC_014521
vertebrates
1
Reoviridae,Rotavirus,Rotavirus D
seg.
GU733453

chicken/05V0049/DEU/2005

11

Rous sarcoma virus
NC_001407
vertebrates
3
Retroviridae,Alpharetrovirus,Rous sarcoma
—
V01197,X68524,AF03

virus

3808

Rous sarcoma virus-
NC_001407
vertebrates
1
Retroviridae,Alpharetrovirus,Rous sarcoma
—
JQ2342

Prague C

virus

Rous sarcoma virus-
NC_001407
vertebrates
1
Retroviridae,Alpharetrovirus,Rous sarcoma
—
AF052428

Schmidt-Ruppin B

virus

Rous sarcoma virus-
NC_001407
vertebrates
1
Retroviridae,Alpharetrovirus,Rous sarcoma
—
D10652

Schmidt-Ruppin D

virus

Rousettus aegyptiacus
NC_008298
vertebrates
1
Papillomaviridae,Psipapillomavirus,Psipapillo
—
DQ366842

papillomavirus type 1

mavirus 1

Rousettus bat coronavirus
NC_018871
vertebrates
2
Coronaviridae,Alphacoronavirus,Bat
—
JQ989271,JQ989270

HKU10

coronavirus HKU10

Rousettus bat coronavirus
NC_009021
vertebrates
1
Coronaviridae,Betacoronavirus,Rousettus bat
—
EF065513

HKU9

coronavirus HKU9

SIVcpz Ptt-04Cam155
NC_001549
vertebrates
1
Retroviridae,Lentivirus,Simian
—
FR686510

,NC_00445

immunodeficiency virus

5

SIVcpz Ptt-09Cam155
NC_001549
vertebrates
1
Retroviridae,Lentivirus,Simian
—
FR686511

,NC_00445

immunodeficiency virus

5

STL polyomavirus
NC_020106
vertebrates
3
Polyomaviridae,Polyomavirus,STL
—
KF525270,JX463184,

polyomavirus

JX463183

Sable antelope coronavirus
NC_010327
vertebrates
1
Coronaviridae,Betacoronavirus,Betacoronavir
—
EF424621

U S/OH 1/2003
,NC_00773

us 1

2,NC_0051

47,NC_003

045

Saffold virus
NC_009448
vertebrates
11
Picornaviridae,Cardiovirus,Theilovirus
—
HM181998,FM20748

,NC_00136

7,JF813004,HM1819

6,NC_0108

97,HM181996,HQ902

10

242,HM181999,HQ16

2476,EF165067,GU9

43513,FN999911

Saimiriine herpesvirus 1
NC_014567
vertebrates
1
Herpesviridae,Simplexvirus,Saimiriine
—
HM625781

herpesvirus 1

Saimiriine herpesvirus 2
NC_001350
vertebrates
2
Herpesviridae,Rhadinovirus,Saimiriine
—
AJ410493,X64346

herpesvirus 2

Saimiriine herpesvirus 3
NC_016448
vertebrates
1
Herpesviridae,Cytomegalovirus,Saimiriine
—
FJ483967

herpesvirus 3

Salivirus
NC_012957
vertebrates
1
Picornaviridae,Salivirus,Salivirus A
—
JN379039

,NC_01298

6

Salivirus A
NC_012957
vertebrates
1
Picornaviridae,Salivirus,Salivirus A
—
GU245894

,NC_01298

6

Salivirus NG-J1
NC_012957
vertebrates
1
Picornaviridae,Salivirus,Salivirus A
—
GQ179640

,NC_01298

6

Sambar deer coronavirus
NC_010327
vertebrates
2
Coronaviridae,Betacoronavirus,Betacoronavir
—
FJ425188,FJ425190

US/OH-WD388-TC/1994
,NC_00773

us 1

2,NC_0051

47,NC_003

045

Sambar deer coronavirus
NC_010327
vertebrates
1
Coronaviridae,Betacoronavirus,Betacoronavir
—
FJ425189

US/OH-W D388/1994
,NC_00773

us 1

2,NC_0051

47,NC_003

045

San Miguel sea lion virus
NC_002551
vertebrates
1
Caliciviridae,Vesivirus,Vesicular exanthema of
—
U15301

swine virus

Scotophilus bat coronavirus
NC_009657
vertebrates
1
Coronaviridae,Alphacoronavirus,Scotophilus
—
DQ648858

512

bat coronavirus 512

Sea turtle tornovirus 1
NC_012094
vertebrates
9
Sea turtle tornovirus 1
—
EU867817,EU867823

,EU867821,EU86782

2,EU867816,EU8678

20,EU867818,EU867

824,EU867819

Seal picornavirus type 1
NC_009891
vertebrates
1
Picornaviridae,Aquamavirus,Aquamavirus A
—
EU142040

Sebokele virus 1
NC_021482
vertebrates
1
Picornaviridae,Parechovirus,Sebokele virus 1
—
HF677705

Seneca valley virus
NC_011349
vertebrates
2
Picornaviridae,Senecavirus,Seneca valley
—
DQ641257,KC667560

virus

Sevenband grouper
NC_008040
vertebrates
1
Nodaviridae,Betanodavirus,Redspotted
seg.
AB373028

nervous necrosis virus

grouper nervous necrosis virus
RNA 1

Sevenband grouper
NC_008041
vertebrates
1
Nodaviridae,Betanodavirus,Redspotted
seg.
AB373029

nervous necrosis virus

grouper nervous necrosis virus
RNA 2

Sheeppox virus
NC_004002
vertebrates
1
Poxviridae,Capripoxvirus,Sheeppox virus
—
AY077832

Sheeppox virus A
NC_004002
vertebrates
1
Poxviridae,Capripoxvirus,Sheeppox virus
—
AY077833

Sheeppox virus NISKHI
NC_004002
vertebrates
1
Poxviridae,Capripoxvirus,Sheeppox virus
—
AY077834

Sheldgoose hepatitis B
NC_005890
vertebrates
2
Hepadnaviridae, Sheldgoose hepatitis B virus
—
AY494853,AY494852

virus

Simian T-cell lymphotropic
NC_011546
vertebrates
1
Retroviridae,Deltaretrovirus,Simian T-cell
—
EU231644

virus 6

lymphotropic virus 6

Simian T-lymphotropic
NC_000858
vertebrates
4
Retroviridae,Deltaretrovirus,Primate T-
—
Z46900,AF074966,JX

virus 1
NC_00143

lymphotropic virus 1

987040,AY590142

6

Simian T-lymphotropic
NC_001815
vertebrates
2
Retroviridae,Deltaretrovirus,Primate T-
—
Y14570,U90557

virus 2
,NC_00148

lymphotropic virus 2

8

Simian T-lymphotropic
NC_003323
vertebrates
5
Retroviridae,Deltaretrovirus,Primate T-
—
AY217650,Y07616,A

virus 3

lymphotropic virus 3

F391797,AF517775,A

Y222339

Simian adenovirus 1
NC_006879
vertebrates
1
Adenoviridae,Mastadenovirus,Human
—
AY771780

adenovirus G

Simian adenovirus 18
NC_022266
vertebrates
1
Adenoviridae,Mastadenovirus,Simian
—
FJQ25931

adenovirus 18

Simian adenovirus 20
NC_020485
vertebrates
1
Adenoviridae,Mastadenovirus,Simian
—
HQ605912

adenovirus 20

Simian adenovirus 22
NC_003266
vertebrates
1
Adenoviridae,Mastadenovirus,Human
—
AY530876

,NC_01782

adenovirus E

5

Simian adenovirus 23
NC_003266
vertebrates
1
Adenoviridae,Mastadenovirus,Human
—
AY530877

,NC_01782

adenovirus E

5

Simian adenovirus 24
NC_003266
vertebrates
1
Adenoviridae,Mastadenovirus,Human
—
AY530878

,NC_01782

adenovirus E

5

Simian adenovirus 25
NC_003266
vertebrates
1
Adenoviridae,Mastadenovirus,Human
—
AF394196

,NC_01782

adenovirus E

5

Simian adenovirus 25,2
NC_003266
vertebrates
1
Adenoviridae,Mastadenovirus,Human
—
FJQ25918

,NC_01782

adenovirus E

5

Simian adenovirus 26
NC_003266
vertebrates
1
Adenoviridae,Mastadenovirus,Human
—
FJQ25923

,NC_01782

adenovirus E

5

Simian adenovirus 3
NC_006144
vertebrates
1
Adenoviridae,Mastadenovirus,Simian
—
AY598782

adenovirus A

Simian adenovirus 30
NC_003266
vertebrates
1
Adenoviridae,Mastadenovirus,Human
—
FJQ25920

,NC_01782

adenovirus E

5

Simian adenovirus 36
NC_003266
vertebrates
1
Adenoviridae,Mastadenovirus,Human
—
FJQ25917

,NC_01782

adenovirus E

5

Simian adenovirus 37,1
NC_003266
vertebrates
1
Adenoviridae,Mastadenovirus,Human
—
FJQ25921

,NC_01782

adenovirus E

5

Simian adenovirus 37,2
NC_003266
vertebrates
1
Adenoviridae,Mastadenovirus,Human
—
FJQ25919

,NC_01782

adenovirus E

5

Simian adenovirus 38
NC_003266
vertebrates
1
Adenoviridae,Mastadenovirus,Human
—
FJQ25922

,NC_01782

adenovirus E

5

Simian adenovirus 39
NC_003266
vertebrates
1
Adenoviridae,Mastadenovirus,Human
—
FJQ25924

,NC_01782

adenovirus E

5

Simian adenovirus 49
NC_015225
vertebrates
1
Adenoviridae,Mastadenovirus,Simian
—
HQ241819

adenovirus B

Simian adenovirus 50
NC_015225
vertebrates
1
Adenoviridae,Mastadenovirus,Simian
—
HQ241820

adenovirus B

Simian adenovirus 6
NC_006144
vertebrates
1
Adenoviridae,Mastadenovirus,Simian
—
JQ776547

adenovirus A

Simian adenovirus A1139
NC_015225
vertebrates
1
Adenoviridae,Mastadenovirus,Simian
—
JN880448

adenovirus B

Simian adenovirus A1163
NC_015225
vertebrates
1
Adenoviridae,Mastadenovirus,Simian
—
JN880449

adenovirus B

Simian adenovirus A1173
NC_015225
vertebrates
1
Adenoviridae,Mastadenovirus,Simian
—
JN880450

adenovirus B

Simian adenovirus A1258
NC_015225
vertebrates
1
Adenoviridae,Mastadenovirus,Simian
—
JN880451

adenovirus B

Simian adenovirus A1285
NC_015225
vertebrates
1
Adenoviridae,Mastadenovirus,Simian
—
JN880452

adenovirus B

Simian adenovirus A1296
NC_015225
vertebrates
1
Adenoviridae,Mastadenovirus,Simian
—
JN880453

adenovirus B

Simian adenovirus A1312
NC_015225
vertebrates
1
Adenoviridae,Mastadenovirus,Simian
—
JN880454

adenovirus B

Simian adenovirus A1327
NC_015225
vertebrates
1
Adenoviridae,Mastadenovirus,Simian
—
JN880455

adenovirus B

Simian adenovirus A1335
NC_015225
vertebrates
1
Adenoviridae,Mastadenovirus,Simian
—
JN880456

adenovirus B

Simian adenovirus B
NC_015225
vertebrates
1
Adenoviridae,Mastadenovirus,Simian
—
KC693021

adenovirus B

Simian adenovirus C
NC_021168
vertebrates
3
Adenoviridae,Mastadenovirus,Simian
—
KC693024,KC693023

adenovirus C

,KC693022

Simian endogenous
NC_001550
vertebrates
1
Retroviridae,Betaretrovirus,Mason-Pfizer
—
JN134185

retrovirus vero ATCC CCL-

monkey virus

81

Simian enterovirus A
NC_003988
vertebrates
1
Picornaviridae,Enterovirus,Enterovirus H
—
AF201894

Simian enterovirus 5V4
NC_003988
vertebrates
1
Picornaviridae,Enterovirus,Enterovirus H
—
AF326759

Simian foamy virus
NC_001364
vertebrates
5
Retroviridae,Spumavirus,Simian foamy virus
—
JQ867465,JQ867462,

JQ867464,U04327,J

0867463

Simian foamy virus-gorilla
NC_001364
vertebrates
1
Retroviridae,Spumavirus,Simian foamy virus
—
HM245790

Simian foamy virus-
NC_001364
vertebrates
1
Retroviridae,Spumavirus,Simian foamy virus
—
AJ544579

orangutan

Simian hemorrhagic fever
NC_003092
vertebrates
1
Arteriviridae,Arterivirus,Simian hemorrhagic
—
AF180391

virus

fever virus

Simian hepatitis A virus
NC_001489
vertebrates
2
Picornaviridae,Hepatovirus,Hepatitis A virus
—
EU140838,DQ0924

Simian immunodeficiency
NC_001549
vertebrates
109
Retroviridae,Lentivirus,Simian
—
JN091690,AY597209,

virus
,NC_00445

immunodeficiency virus

AB253736,AY340700

5

,AF328295,DQ37306

3,EU280804,AF0752

69,EF070331,EF5359

93,EF394357,M3132

5,U79412,AY611486,

M27470,AY169968,E

F070330,AY603959,A

Y576480,M19499,EU

280805,AY599198,D

0201174,JN835461,

AY611488,AY607702

,AJ271369,AY599201

,AY159322,AY52386

6,AY576481,DQ3746

58,AY588945,DQ201

173,AY611494,AB17

7846,AF103818,AM7

13177,EF070329,X52

154,AY588946,M327

41,FJ424863,DQ3746

57,M30931,EF39435

8,JQ866001,AY61149

1,M58410,JQ864084,

M33262,M29975,AF3

82829,EF535994,AF0

77017,FR751162,M6

6437,FJ424865,AF46

8658,EU280806,AY6

07703,AY340701,FJ4

24871,FJ424864,FJ4

24866,AY607701,AY

611487,AY611492,AF

468659,AF301156,AY

611489,AY523865,M

76764,JN091691,AY5

99200,JQ864086,EF3

94356,AF131870,M8

3293,AY611495,JQ86

4087,DQ373064,AF1

15393,JN835462,EU2

80803,DQ201172,AY

655744,AY587015,L0

6042,JN835460,AY60

0249,AF334679,U727

48,XQ7805,L03295,A

J580407,DQ373066,

AY611493,AM745105

,AY159321,AY52386

7,DQ373065,AY6077

04,AY599199,AM182

197,JQ864085,AF382

828,AY611490,AF447

763

Simian immunodeficiency
NC_001549
vertebrates
1
Retroviridae,Lentivirus,Simian
—
U04005

virus-agm,sab-1
,NC_00445

immunodeficiency virus

5

Simian immunodeficiency
NC_001549
vertebrates
1
Retroviridae,Lentivirus,Simian
—
U58991

virus-agm,tan-1
,NC_00445

immunodeficiency virus

5

Simian immunodeficiency
NC_001549
vertebrates
1
Retroviridae,Lentivirus,Simian
—
AY033233

virus 17E-CI
,NC_00445

immunodeficiency virus

5

Simian immunodeficiency
NC_001549
vertebrates
1
Retroviridae,Lentivirus,Simian
—
AY033146

virus 17E-Fr
,NC_00445

immunodeficiency virus

5

Simian retrovirus 1
NC_001550
vertebrates
2
Retroviridae,Betaretrovirus,Mason-Pfizer
—
M11841,U85505

monkey virus

Simian retrovirus 2
NC_001550
vertebrates
3
Retroviridae,Betaretrovirus,Mason-Pfizer
—
M16605,AF126467,A

monkey virus

F126468

Simian retrovirus 4
NC_014474
vertebrates
3
Retroviridae,Betaretrovirus,Simian retrovirus 4
—
FJ979639,FJ971077,

FJ979638

Simian sapelovirus 1
NC_004451
vertebrates
1
Picornaviridae,Sapelovirus,Simian sapelovirus
—
AY064708

Simian virus 12
NC_007611
vertebrates
2
Polyomaviridae,Polyomavirus,Simian virus 12
—
DQ435829,AY614708

Singapore grouper
NC_006549
vertebrates
1
Incloviridae,Ranavirus,Singapore grouper
—
AY521625

iridovirus

iridovirus

Siniperca chuatsi
NC_008514
vertebrates
1
Rhabdoviridae, Siniperca chuatsi rhabdovirus
—
DQ399789

rhabdovirus

Small ruminant lentivirus
NC_001463
vertebrates
1
Retroviridae,Lentivirus,Caprine arthritis
—
HM210570

encephalitis virus

Snake adenovirus 1
NC_009989
vertebrates
1
Adenoviridae,Atadenovirus,Snake adenovirus
—
DQ106414

A

Snake parvovirus 1
NC_006148
vertebrates
1
Parvoviridae,Dependovirus,Snake parvovirus
—
AY349010

1

Snakehead retrovirus
NC_001724
vertebrates
1
Retroviridae, Snakehead retrovirus
—
U26458

Snakehead rhabdovirus
NC_000903
vertebrates
1
Rhabdoviridae,Novirhabdovirus,Snakehead
—
AF147498

virus

Snow goose hepatitis B
NC_005888
vertebrates
4
Hepadnaviridae, Ross's goose hepatitis B
—
AF110999,AF111000,

virus
,NC_00595

virus

AF110997,AF110998

0

Soft-shelled turtle iridovirus
NC_005946
vertebrates
1
Incloviridae,Ranavirus,Frog virus 3
—
EU627010

South polar skua
NC_016437
vertebrates
1
Adenoviridae,Siadenovirus,Skua adenovirus A
—
HM585353

adenovirus-1

Sparrow coronavirus
NC_016992
vertebrates
1
Coronaviridae,Deltacoronavirus,Sparrow
—
JQ065045

HKU17

coronavirus HKU17

Spider monkey foamy virus
NC_001364
vertebrates
1
Retroviridae,Spumavirus,Simian foamy virus
—
EU010385

Spissistilus festinus
NC_016874
vertebrates
1
Reoviridae,Spissistilus festinus reovirus
seg. 2
JF773383

reovirus

Spissistilus festinus
NC_016875
vertebrates
1
Reoviridae,Spissistilus festinus reovirus
seg. 4
JF773385

reovirus

Spissistilus festinus
NC_016876
vertebrates
1
Reoviridae,Spissistilus festinus reovirus
seg. 6
JF773387

reovirus

Spissistilus festinus
NC_016877
vertebrates
1
Reoviridae,Spissistilus festinus reovirus
seg. 8
JF773389

reovirus

Spissistilus festinus
NC_016878
vertebrates
1
Reoviridae,Spissistilus festinus reovirus
seg.
JF773391

reovirus

10

Spissistilus festinus
NC_016879
vertebrates
1
Reoviridae,Spissistilus festinus reovirus
seg. 1
JF773382

reovirus

Spissistilus festinus
NC_016880
vertebrates
1
Reoviridae,Spissistilus festinus reovirus
seg. 3
JF773384

reovirus

Spissistilus festinus
NC_016881
vertebrates
1
Reoviridae,Spissistilus festinus reovirus
seg. 5
JF773386

reovirus

Spissistilus festinus
NC_016882
vertebrates
1
Reoviridae,Spissistilus festinus reovirus
seg. 7
JF773388

reovirus

Spissistilus festinus
NC_016883
vertebrates
1
Reoviridae,Spissistilus festinus reovirus
seg. 9
JF773390

reovirus

Spleen focus-forming virus
NC_001500
vertebrates
1
Retroviridae,Gammaretrovirus,Spleen focus-
—
K00021

forming virus

Spring viraemia of carp
NC_002803
vertebrates
4
Rhabdoviridae,Vesiculovirus,Spring viraemia
—
U18101,AJ318079,E

virus

of carp virus

U177782,DQ491000

Spring viremia of carp virus
NC_002803
vertebrates
1
Rhabdoviridae,Vesiculovirus,Spring viraemia
—
DQ097384

of carp virus

Squirrel monkey foamy
NC_001364
vertebrates
1
Retroviridae,Spumavirus,Simian foamy virus
—
GU356394

virus

Squirrel monkey
NC_009951
vertebrates
1
Polyomaviridae,Polyomavirus,Squirrel monkey
—
AM748741

polyomavirus

polyomavirus

Squirrel monkey retrovirus
NC_001514
vertebrates
1
Retroviridae,Betaretrovirus,Squirrel monkey
—
M23385

retrovirus

Squirrelpox virus
NC_022563
vertebrates
1
Poxviridae,Squirrelpox virus
—
HE601899

St-Valerien swine virus
NC_012699
vertebrates
1
Caliciviridae,St-Valerien swine virus
—
AB863586

Starling circovirus
NC_008033
vertebrates
1
Circoviridae,Circovirus,Starling circovirus
—
DQ172906

Steller sea lion vesivirus
NC_011050
vertebrates
2
Caliciviridae,Vesivirus,Steller sea lion
—
EF193004,EF195384

vesivirus

Stork hepatitis B virus
NC_001486
vertebrates
4
Hepadnaviridae,Avihepadnavirus,Heron
—
AJ251937,AJ251935,

hepatitis B virus

AJ251936,AJ251934

Striped Jack nervous
NC_003448
vertebrates
2
Nodaviridae,Betanodavirus,Striped Jack
seg.
AB025018,AB056571

necrosis virus

nervous necrosis virus
RNA 1

Striped Jack nervous
NC_003449
vertebrates
2
Nodaviridae,Betanodavirus,Striped Jack
seg.
AB056572,D30814

necrosis virus

nervous necrosis virus
RNA 2

Striped bass reovirus
NC_007588
vertebrates
1
Reoviridae,Aquareovirus,Aquareovirus A
seg. 8
AF450321

Striped bass reovirus
NC_007590
vertebrates
2
Reoviridae,Aquareovirus,Aquareovirus A
seg.
U83396,AF450322

10

Suid herpesvirus 1
NC_006151
vertebrates
6
Herpesviridae,Varicellovirus,Suid herpesvirus
—
JF797217,BK001744,

1

JQ809330,JQ809329,

JF797219,JF797218

Sus scrofa papillomavirus
NC_011280
vertebrates
2
Papillomaviridae,Dyodeltapapillomavirus,Dyod
—
EF395819,EF395818

type 1

eltapapillomavirus 1

Swine pasivirus 1
NC_018226
vertebrates
1
Picornaviridae,Swine pasivirus 1
—
JQ316470

Swinepox virus
NC_003389
vertebrates
1
Poxviridae,Suipoxvirus,Swinepox virus
—
AF410153

TGEV Miller M6
NC_002306
vertebrates
1
Coronaviridae,Alphacoronavirus,Alphacoronav
—
DQ811785

irus 1

TGEV Miller M60
NC_002306
vertebrates
1
Coronaviridae,Alphacoronavirus,Alphacoronav
—
DQ811786

irus 1

TGEV Purdue P115
NC_002306
vertebrates
1
Coronaviridae,Alphacoronavirus,Alphacoronav
—
DQ811788

irus 1

TGEV virulent Purdue
NC_002306
vertebrates
1
Coronaviridae,Alphacoronavirus,Alphacoronav
—
DQ811789

irus 1

Tanapox virus
NC_002642
vertebrates
1
Poxviridae,Yatapoxvirus,Tanapox virus
—
EF420157

,NC_00988

8

Taterapox virus
NC_008291
vertebrates
1
Poxviridae,Orthopoxvirus,Taterapox virus
—
DQ437594

Theiler's encephalomyelitis
NC_009448
vertebrates
9
Picornaviridae,Cardiovirus,Theilovirus
—
M16020,EU723238,E

virus
,NC_00136

U718732,HQ652539,

6,NC_0108

EU718733,M20301,D

10

0401688,M20562,JX

443418

Theiler's-like virus of rats
NC_009448
vertebrates
1
Picornaviridae,Cardiovirus,Theilovirus
—
AB090161

,NC_00136

6,NC_0108

10

Threadfin reovirus
NC_007590
vertebrates
1
Reoviridae,Aquareovirus,Aquareovirus A
seg.
AY236219

10

Threadfin reovirus
NC_007591
vertebrates
1
Reoviridae,Aquareovirus,Aquareovirus A
seg.
AF524892

11

Threadfin reovirus
NC_007592
vertebrates
1
Reoviridae,Aquareovirus,Aquareovirus A
seg. 6
AY235428

Thrush coronavirus
NC_011549
vertebrates
1
Coronaviridae,Deltacoronavirus,Thrush
—
FJ376621

HKU12-600

coronavirus HKU12

Tiger frog virus
NC_005946
vertebrates
1
Incloviridae,Ranavirus,Frog virus 3
—
AF389451

Tiger puffer nervous
NC_013460
vertebrates
1
Nodaviridae,Betanodavirus,Tiger puffer
seg.
EU236148

necrosis virus

nervous necrosis virus
RNA 1

Tiger puffer nervous
NC_013461
vertebrates
1
Nodaviridae,Betanodavirus,Tiger puffer
seg.
EU236149

necrosis virus

nervous necrosis virus
RNA 2

Titi monkey adenovirus
NC_020487
vertebrates
1
Adenoviridae, Titi monkey adenovirus ECC-
—
HQ913600

ECC-2011

2011

Transmissible
NC_002306
vertebrates
10
Coronaviridae,Alphacoronavirus,Alphacoronav
—
HQ462571,DQ20144

gastroenteritis virus

irus 1

7,AJ271965,AX15495

0,KC962433,EU0742

18,C0870486,DQ443

743,HM776941,FJ75

5618

Trichechus manatus
NC_006563
vertebrates
1
Papillomaviridae,Rhopapillomavirus,Rhopapill
—
AY609301

latirostris papillomavirus 1

omavirus 1

Trichechus manatus
NC_016898
vertebrates
1
Papillomaviridae,Trichechus manatus
—
JN709473

latirostris papillomavirus 2

latirostris papillomavirus 2

Trichodysplasia spinulosa-
NC_014361
vertebrates
3
Polyomaviridae,Polyomavirus,Trichodysplasia
—
GU989205,AB873001

associated polyomavirus

spinulosa-associated polyomavirus

,JQ723730

Tupaia virus
NC_007020
vertebrates
1
Rhabdoviridae, Tupaia virus
—
AY840978

Tupaiid herpesvirus 1
NC_002794
vertebrates
1
Herpesviridae, Tupaiid herpesvirus 1
—
AF281817

Turdivirus 1
NC_014411
vertebrates
2
Picornaviridae,Orthoturdivirus,Turdivirus 1
—
GU182406,GU18240

7

Turdivirus 2
NC_014412
vertebrates
2
Picornaviridae,Paraturdivirus,Turdivirus 2
—
GU182409,GU18240

8

Turdivirus 3
NC_014413
vertebrates
2
Picornaviridae,Paraturdivirus,Turdivirus 3
—
GU182411,GU18241

0

Turkey adenovirus 1
NC_014564
vertebrates
1
Adenoviridae,Aviadenovirus,Turkey
—
GU936707

adenovirus B

Turkey adenovirus 4
NC_022612
vertebrates
1
Adenoviridae,Aviadenovirus,Turkey
—
KF477312

adenovirus 4

Turkey adenovirus 5
NC_022613
vertebrates
1
Adenoviridae,Aviadenovirus,Turkey
—
KF477313

adenovirus 5

Turkey adenovirus A
NC_001958
vertebrates
1
Adenoviridae,Siadenovirus,Turkey adenovirus

— AF074946

A

Turkey astrovirus
NC_002470
vertebrates
8
Astroviridae,Avastrovirus,Turkey astrovirus
—
EU143850,EU143845

,EU143848,EU14384

9,EU143846,EU1438

47, EU143844,Y15936

Turkey astrovirus 2
NC_005790
vertebrates
2
Astroviridae,Avastrovirus,Avastrovirus 3
—
EU143843,AF206663

Turkey coronavirus
NC_010800
vertebrates
7
Coronaviridae,Gammacoronavirus,Avian
—
GQ427175,EU02252

,NC_00145

coronavirus

6,GQ4271 74,GQ4271

1

73,GQ427176,EU022

525,EU095850

Turkey gallivirus
NC_018400
vertebrates
1
Picornaviridae, Turkey gallivirus
—
JQ691613

Turkey hepatitis virus
NC_021201
vertebrates
1
Picornaviridae,Megrivirus,Melegrivirus A
—
HM751199

2993D

Tursiops truncatus
NC_011109
vertebrates
1
Papillomaviridae,Upsilonpapillomavirus,Upsilo
—
EU240894

papillomavirus 1

npapillomavirus 1

Tursiops truncatus
NC_008184
vertebrates
1
Papillomaviridae,Upsilonpapillomavirus,Upsilo
—
AY956402

papillomavirus 2

npapillomavirus 2

Tursiops truncatus
NC_011109
vertebrates
1
Papillomaviridae,Upsilonpapillomavirus,Upsilo
—
EU240895

papillomavirus type 3

npapillomavirus 1

Tylonycteris bat
NC_009019
vertebrates
1
Coronaviridae,Betacoronavirus,Tylonycteris
—
EF065505

coronavirus HKU4

bat coronavirus HKU4

UR2 sarcoma virus
NC_001618
vertebrates
1
Retroviridae,Alpharetrovirus,UR2 sarcoma
—
M10455

virus

Uncia uncia papillomavirus
NC_004765
vertebrates
1
Papillomaviridae,Lambdapapillomavirus,Lamb
—
DQ180494

type 1

dapapillomavirus 1

Ursus maritimus
NC_010739
vertebrates
1
Papillomaviridae,Omegapapillomavirus,Omeg
—
EF536349

papillomavirus 1

apapillomavirus 1

VESV-like calicivirus
NC_002551
vertebrates
1
Caliciviridae,Vesivirus,Vesicular exanthema of
—
AF091736

swine virus

Vervet monkey
NC_019844
vertebrates
1
Polyomaviridae,Polyomavirus,Vervet monkey
—
AB767298

polyomavirus 1

polyomavirus 1

Vesicular exanthema of
NC_002551
vertebrates
1
Caliciviridae,Vesivirus,Vesicular exanthema of
—
U76874

swine virus

swine virus

Viral hemorrhagic
NC_000855
vertebrates
16
Rhabdoviridae,Novirhabdovirus,Viral
—
AB672614,EU481506

septicemia virus

hemorrhagic septicemia virus

,FJ460590,AF143862

,AF143863,FJ362510

,GQ385941,FN66578

8,JF792424,Z93412,

KF477302,FJ460591,

Z93414,AB179621,A

B490792,KC778774

Viral hemorrhagic
NC_000855
vertebrates
1
Rhabdoviridae,Novirhabdovirus,Viral
—
AJ233396

septicemia virus (STRAIN

hemorrhagic septicemia virus

07-71)

Viral hemorrhagic
NC_000855
vertebrates
1
Rhabdoviridae,Novirhabdovirus,Viral
—
Y18263

septicemia virus Fil3

hemorrhagic septicemia virus

Visna/Maedi virus
NC_001452
vertebrates
7
Retroviridae,Lentivirus,Visna/maedi virus
—
M10608,M60610,M60

609,L06906,M51543,

555323,A15114

Visna/maedi virus
NC_001452
vertebrates
1
Retroviridae,Lentivirus,Visna/maedi virus
—
HQ848062

Walleye dermal sarcoma
NC_001867
vertebrates
3
Retroviridae,Epsilonretrovirus,Walleye dermal
—
AF033822,L41838,EF

virus

sarcoma virus

428979

Walrus calicivirus
NC_004541
vertebrates
1
Caliciviridae, Walrus calicivirus
—
AF321298

Waterbuck coronavirus
NC_010327
vertebrates
1
Coronaviridae,Betacoronavirus,Betacoronavir
—
FJ425185

US/OH-WD358-GnC/1994
,NC_00773

us 1

2,NC_0051

47,NC_003

045

Waterbuck coronavirus
NC_010327
vertebrates
1
Coronaviridae,Betacoronavirus,Betacoronavir
—
FJ425184

US/OH-WD358-TC/1994
,NC_00773

us 1

2,NC_0051

47,NC_003

045

Waterbuck coronavirus
NC_010327
vertebrates
1
Coronaviridae,Betacoronavirus,Betacoronavir
—
FJ425186

US/OH-W D358/1994
,NC_00773

us 1

2,NC_0051

47,NC_003

045

White bream virus
NC_008516
vertebrates
1
Coronaviridae,Bafinivirus,White bream virus
—
DQ898157

White-eye coronavirus
NC_016991
vertebrates
1
Coronaviridae,Deltacoronavirus,White-eye
—
JQ065044

HKU16

coronavirus HKU16

White-tailed deer
NC_010327
vertebrates
1
Coronaviridae,Betacoronavirus,Betacoronavir
—
FJ425187

coronavirus US/OH-
,NC_00773

us 1

WD470/1994
2,NC_0051

47,NC_003

045

Wigeon coronavirus
NC_016995
vertebrates
1
Coronaviridae,Deltacoronavirus,Wigeon
—
JQ065048

HKU20

coronavirus HKU20

Wood mouse herpesvirus
NC_001826
vertebrates
1
Herpesviridae,Rhadinovirus,Murid herpesvirus
—
GQ169129

4

Woodchuck hepatitis virus
NC_004107
vertebrates
19
Hepadnaviridae,Orthohepadnavirus,Woodchuck
—
KF874491,M11082,M

hepatitis virus

19183,M18752,GU73

4791,JQ4514,AY3340

77,KF874493,AY3340

75,AY334076,AY628

100,JQ2442,AY62809

7,AY628099,AY6280

98,KF874492,AY6280

95,AY628096,M9052

0

Woolly monkey sarcoma
NC_009424
vertebrates
1
Retroviridae,Gammaretrovirus,Woolly monkey
—
V01201

virus

sarcoma virus

XMRV
NC_007815
vertebrates
1
Retroviridae,Gammaretrovirus,Murine
—
FR872816

leukemia-related retroviruses

XMRV-like mouse
NC_007815
vertebrates
1
Retroviridae,Gammaretrovirus,Murine
—
JF714652

endogenous retrovirus

leukemia-related retroviruses

mERV-XL

Xenopus laevis
NC_010955
vertebrates
1
Retroviridae, Xenopus laevis endogenous
—
AJ506107

endogenous retrovirus

retrovirus Xen1

Xen1

Xenotropic MuLV-related
NC_007815
vertebrates
4
Retroviridae,Gammaretrovirus,Murine
—
HQ154630,GQ49734

virus

leukemia-related retroviruses

3,GQ497344,FN6920

43

Xenotropic MuLV-related
NC_007815
vertebrates
1
Retroviridae,Gammaretrovirus,Murine
—
DQ241301

virus VP35

leukemia-related retroviruses

Xenotropic MuLV-related
NC_007815
vertebrates
1
Retroviridae,Gammaretrovirus,Murine
—
DQ241302

virus VP42

leukemia-related retroviruses

Xenotropic MuLV-related
NC_007815
vertebrates
2
Retroviridae,Gammaretrovirus,Murine
—
EF185282,DQ399707

virus VP62

leukemia-related retroviruses

Xenotropic murine
NC_001702
vertebrates
2
Retroviridae,Gammaretrovirus,Murine
—
JF908816,JF908815

leukemia virus
,NC_00181

leukemia virus

9,NC_0013

62,NC_001

501

Y73 sarcoma virus
NC_008094
vertebrates
2
Retroviridae,Alpharetrovirus,Y73 sarcoma
—
V01170,L21974

virus

Yaba monkey tumor virus
NC_005179
vertebrates
1
Poxviridae,Yatapoxvirus,Yaba monkey tumor
—
AY386371

virus

Yaba-like disease virus
NC_002642
vertebrates
1
Poxviridae,Yatapoxvirus,Tanapox virus
—
AJ293568

,NC_00988

8

Yellowtail ascites virus
NC_004168
vertebrates
3
Birnaviridae,Aquabirnavirus,Yellowtail ascites
seg.
AB281673,AB011440

virus RNA
A
,AB006783

Yellowtail ascites virus
NC_004176
vertebrates
2
Birnaviridae,Aquabirnavirus,Yellowtail ascites
seg.
AY129662,AB281674

virus
RNA B

Yellowtail ascites virus-
NC_004176
vertebrates
1
Birnaviridae,Aquabirnavirus,Yellowtail ascites
seg.
AY129663

YT-01A

virus
RNA B

Yoka poxvirus
NC_015960
vertebrates
1
Poxviridae,Orthopoxvirus,Yoka poxvirus
—
HQ849551

Zalophus californianus
NC_015325
vertebrates
1
Papillomaviridae,Zalophus californianus
—
HQ293213

papillomavirus 1

papillomavirus 1

Zetapapillomavirus 1
NC_003748
vertebrates
1
Papillomaviridae,Zetapapillomavirus,Zetapapill
—
AF394740

omavirus 1

Adeno-associated virus-2
NC_001401
vertebrates,human
2
Parvoviridae,Dependovirus,Adeno-associated
—
AF043303,JQ1901

virus-2

Adeno-associated virus-3
NC_001729
vertebrates,human
1
Parvoviridae,Dependovirus,Adeno-associated
—
U48704

virus-3

Adeno-associated virus-5
NC_006152
vertebrates,human
2
Parvoviridae,Dependovirus,Adeno-associated
—
AF085716,Y18065

virus-5

Adeno-associated virus 3B
NC_001729
vertebrates,human
1
Parvoviridae,Dependovirus,Adeno-associated
—
AF028705

virus-3

Adeno-associated virus-
NC_006152
vertebrates,human
1
Parvoviridae,Dependovirus,Adeno-associated
—
DQ335246

Go,1

virus-5

Adult diarrheal rotavirus
NC_007548
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus H
seg. 1
DQ113897

strain J19

Adult diarrheal rotavirus
NC_007549
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus H
seg. 2
DQ113898

strain J19

Adult diarrheal rotavirus
NC_007550
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus H
seg. 4
DQ113899

strain J19

Adult diarrheal rotavirus
NC_007551
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus H
seg. 3
DQ113900

strain J19

Adult diarrheal rotavirus
NC_007552
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus H
seg. 5
DQ113901

strain J19

Adult diarrheal rotavirus
NC_007553
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus H
seg. 6
DQ113902

strain J19

Adult diarrheal rotavirus
NC_007554
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus H
seg. 8
DQ113903

strain J19

Adult diarrheal rotavirus
NC_007555
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus H
seg. 7
DQ113904

strain J19

Adult diarrheal rotavirus
NC_007556
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus H
seg. 9
DQ113905

strain J19

Adult diarrheal rotavirus
NC_007557
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus H
seg.
DQ113906

strain J19

10

Adult diarrheal rotavirus
NC_007558
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus H
seg.
DQ113907

strain J19

11

Allpahuayo virus
NC_010249
vertebrates,human
1
Arenaviridae,Arenavirus,Allpahuayo virus
seg. L
AY216502

Allpahuayo virus
NC_010253
vertebrates,human
3
Arenaviridae,Arenavirus,Allpahuayo virus
seg. S
AY012686,AY081210

,AY012687

Alpaca respiratory
NC_002645
vertebrates,human
1
Coronaviridae,Alphacoronavirus,Human
—
JQ410000

coronavirus

coronavirus 229E

Amapari virus
NC_010247
vertebrates,human
2
Arenaviridae,Arenavirus,Amapari virus
seg. S
AF485256,AF512834

Amapari virus
NC_010251
vertebrates,human
2
Arenaviridae,Arenavirus,Amapari virus
seg. L
AY924389,AY216517

Andes virus
NC_003466
vertebrates,human
5
Bunyaviridae,Hantavirus,Andes virus
seg. S
AF291702,AF004660,

AF324902,AY228237,

AF325966

Andes virus
NC_003467
vertebrates,human
3
Bunyaviridae,Hantavirus,Andes virus
seg. M
AF291703,AF324901,

AY228238

Andes virus
NC_003468
vertebrates,human
2
Bunyaviridae,Hantavirus,Andes virus
seg. L
AY228239,AF291704

Araraquara-like virus strain
NC_003466
vertebrates,human
1
Bunyaviridae,Hantavirus,Andes virus
seg. S
EF571895

P5/Cajuru

Aravan virus
NC_020808
vertebrates,human
1
Rhabdoviridae,Lyssavirus,Aravan virus
—
EF614259

Arenavirus AV 96010025
NC_010700
vertebrates,human
1
Arenaviridae,Arenavirus,Whitewater Arroyo
seg. S
EU486820

virus

Arenavirus HQ380005
NC_010700
vertebrates,human
1
Arenaviridae,Arenavirus,Whitewater Arroyo
seg. S
EU910959

virus

Australian bat lyssavirus
NC_003243
vertebrates,human
2
Rhabdoviridae,Lyssavirus,Australian bat
—
AF418014,AF081020

lyssavirus

Avian hepatitis E virus
NC_023425
vertebrates,human
3
Hepeviridae,Avian hepatitis E virus
—
AM943646,AY535004

,KC454286

Avian metapneumovirus
NC_007652
vertebrates,human
10
Paramyxoviridae,Metapneumovirus,Avian
—
DQ009484,EF199772

metapneumovirus

,AY640317,JF424833

,DQ666911,AB54842

8,EF199771,AY59068

8,FJ977568,AY57978

0

Avian paramyxovirus 4
NC_019531
vertebrates,human
5
Paramyxoviridae,Avulavirus,Avian
—
JX987283,EU877976,

paramyxovirus 4

FJ177514,JN571485,

JX133079

Avian paramyxovirus 6
NC_003043
vertebrates,human
7
Paramyxoviridae,Avulavirus,Avian
—
EU622637,JX522537,

paramyxovirus 6

KF267717,AY029299,

AB759118,EF569970,

GQ406232

Avian rotavirus A
NC_011508
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 3
AY277923

Avian rotavirus A
NC_011509
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 6
DQ096805

Avian rotavirus CH2
NC_011509
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 6
EF687020

Avian rotavirus P0-13
NC_011506
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 2
AB009630

Avian rotavirus P0-13
NC_011507
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 1
AB009629

Avian rotavirus P0-13
NC_011508
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 3
AB009631

BK polyomavirus
NC_001538
vertebrates,human
282
Polyomaviridae,Polyomavirus,BK
—
KF055891,AB211388,

polyomavirus

AB269835,AB269836

,AB263928,AB29894

1,AB464960,AB4649

63,JN192434,V01108

,AB263918,AB26986

4,AB301093,AB2179

18,AB464955,AB365

166,JN192439,JN192

431,AB263925,AB26

3912,AB369091,AB3

65164,AY628237,AB

263926,FR720317,A

B485697,AB464957,

AB269868,FR720309

,AB263938,AB26982

3,AB269840,AB2698

31,V01109,AB365163

,FR720314,AB30109

5,AB369089,AB4856

96,AB269852,AB269

834,FR720312,AB26

9863,AB263934,FR7

20321,AB298944,AB

211371,AB211391,A

B298945,FR720322,

AB263922,AB269847

,AB365158,AB36516

1,AB269827,AB3651

48,JN192438,AY6282

29,AB365139,AB301

087,AB263916,AB26

3920,M23122,AY628

235,AB365135,AY62

8233,AB217920,AB2

69855,AB485706,AB

269851,KF055892,AB

365171,AB365175,A

B485709,AB369096,

AY628225,AB269866

,AB365151,AB26984

1,AB485707,AB2698

25,AB211387,AB365

132,AB269832,AY62

8231,AB260029,AB2

69848,AB365170,AB

365130,AB269844,A

B269830,AB485712,

AB269856,AB269853

,AB301089,AB26984

5,AB365136,AB3651

55,AB301102,AB263

914,AB485703,JN192

432,FR720318,AB26

9861,AB365174,AB2

63933,AB301091,AB

269865,AB365134,A

B301097,AB213487,

AB301099,AB369094

,AY628226,AB36909

3,AB217917,AB3651

69,AB269837,AB365

146,AY628227,JQ713

822,EF376992,AB260

033,AB263936,AB21

1373,AB211389,AB4

64958,AB464953,AB

365137,AB269839,A

B211390,AB485698,J

N192437,AB260031,

AB365167,AB269842

,FR720319,AB36516

8,AB269829,AB2639

17,AB365159,FR720

320,AB301086,AB26

3937,AB365176,JN19

2440,AB269849,AB2

69838,AB211370,AB

263919,AB365172,A

B365144,AB260028,

AB485708,JN192435,

AB298947,AB269824

,AB269857,AB26984

3,AB269846,AB3651

33,AB211381,AB365

156,AY628234,AB36

9098,AB211385,AB2

63935,AB369100,AB

365177,FR720323,A

B301100,AB464962,

AB365157,AB485705

,AB485711,AB26986

7,FR720311,KF05589

3,AB365141,AB2113

77,AB365173,AB485

701,AB260030,AB48

5700,AB211375,AB3

65140,AB217919,AB

301092,AB369095,A

B369087,AB263927,

AB211374,AB464956

,AB301103,AB36516

5,AB269833,AB3651

38,AY628230,AB269

860,AB485699,AB21

1376,AB365147,AB3

69092,AB464954,AB

269826,AB365143,A

B365145,FR720310,

AB369090,AB263924

,AB369101,AB30110

1,AY628238,AB2639

13,AB485702,AB298

946,AB365154,AB26

3930,AB301088,AB3

69088,AB365150,AB

464961,AB260032,A

B365149,AB211379,

AY628228,AY628224

,AB298940,AB26985

9,AB301098,AB3690

97,AB485710,AB211

382,AB269858,DQ30

5492,AB485695,AB2

63921,AB301094,JN1

92433,AB263932,AB

369099,AB365153,A

B365131,FR720316,

AB301090,AB211372

,AB211386,AB29894

3,AB365160,AB3651

42,AB263931,AB485

704,AB269862,FR72

0313,AB217921,AB2

69828,AB269854,AB

485694,AB269850,JN

192436,FR720315,JN

192441,AB269822,A

B365152,AB298942,

AB263915,AB263923

,AB269869,AB36516

2,AB365178,AY6282

36,AB260034,AB211

383,FR720308,AB21

1384,AY628232,AB2

11378,AB211380,AB

211369,AB464959,A

B263929,AB301096

Baboon enterovirus
NC_001612
vertebrates,human
1
Picornaviridae,Enterovirus,Enterovirus A
—
AF326750

Bat Coy 273/2005
NC_004718
vertebrates,human
1
Coronaviridae,Betacoronavirus,Severe acute
—
DQ648856

respiratory syndrome-related coronavirus

Bat Coy 279/2005
NC_004718
vertebrates,human
1
Coronaviridae,Betacoronavirus,Severe acute
—
DQ648857

respiratory syndrome-related coronavirus

Bat Hepatitis B virus
NC_003977
vertebrates,human
1
Hepadnaviridae,Orthohepadnavirus,Hepatitis
—
KC790377

B virus

Bat SARS Coy Rf1/2004
NC_004718
vertebrates,human
1
Coronaviridae,Betacoronavirus,Severe acute
—
DQ412042

respiratory syndrome-related coronavirus

Bat SARS Coy Rm1/2004
NC_004718
vertebrates,human
1
Coronaviridae,Betacoronavirus,Severe acute
—
DQ412043

respiratory syndrome-related coronavirus

Bat SARS Coy Rp3/2004
NC_004718
vertebrates,human
1
Coronaviridae,Betacoronavirus,Severe acute
—
DQ071615

respiratory syndrome-related coronavirus

Bat SARS coronavirus
NC_004718
vertebrates,human
1
Coronaviridae,Betacoronavirus,Severe acute
—
GQ153545

HKU3-10

respiratory syndrome-related coronavirus

Bat SARS coronavirus
NC_004718
vertebrates,human
1
Coronaviridae,Betacoronavirus,Severe acute
—
GQ153546

HKU3-11

respiratory syndrome-related coronavirus

Bat SARS coronavirus
NC_004718
vertebrates,human
1
Coronaviridae,Betacoronavirus,Severe acute
—
GQ153547

HKU3-12

respiratory syndrome-related coronavirus

Bat SARS coronavirus
NC_004718
vertebrates,human
1
Coronaviridae,Betacoronavirus,Severe acute
—
GQ153548

HKU3-13

respiratory syndrome-related coronavirus

Bat SARS coronavirus
NC_004718
vertebrates,human
1
Coronaviridae,Betacoronavirus,Severe acute
—
DQ084199

HKU3-2

respiratory syndrome-related coronavirus

Bat SARS coronavirus
NC_004718
vertebrates,human
1
Coronaviridae,Betacoronavirus,Severe acute
—
DQ084200

HKU3-3

respiratory syndrome-related coronavirus

Bat SARS coronavirus
NC_004718
vertebrates,human
1
Coronaviridae,Betacoronavirus,Severe acute
—
GQ153539

HKU3-4

respiratory syndrome-related coronavirus

Bat SARS coronavirus
NC_004718
vertebrates,human
1
Coronaviridae,Betacoronavirus,Severe acute
—
GQ153540

HKU3-5

respiratory syndrome-related coronavirus

Bat SARS coronavirus
NC_004718
vertebrates,human
1
Coronaviridae,Betacoronavirus,Severe acute
—
GQ153541

HKU3-6

respiratory syndrome-related coronavirus

Bat SARS coronavirus
NC_004718
vertebrates,human
1
Coronaviridae,Betacoronavirus,Severe acute
—
GQ153542

HKU3-7

respiratory syndrome-related coronavirus

Bat SARS coronavirus
NC_004718
vertebrates,human
1
Coronaviridae,Betacoronavirus,Severe acute
—
GQ153543

HKU3-8

respiratory syndrome-related coronavirus

Bat SARS coronavirus
NC_004718
vertebrates,human
1
Coronaviridae,Betacoronavirus,Severe acute
—
GQ153544

HKU3-9

respiratory syndrome-related coronavirus

Bat SARS-like coronavirus
NC_004718
vertebrates,human
1
Coronaviridae,Betacoronavirus,Severe acute
—
KC881006

Rs3367

respiratory syndrome-related coronavirus

Bat SARS-like coronavirus
NC_004718
vertebrates,human
1
Coronaviridae,Betacoronavirus,Severe acute
—
KC881005

RsSHC014

respiratory syndrome-related coronavirus

Bat SARS-like coronavirus
NC_004718
vertebrates,human
1
Coronaviridae,Betacoronavirus,Severe acute
—
KF367457

WIV1

respiratory syndrome-related coronavirus

Bat coronavirus HKU3
NC_004718
vertebrates,human
1
Coronaviridae,Betacoronavirus,Severe acute
—
DQ022305

respiratory syndrome-related coronavirus

Bat hepevirus
NC_018382
vertebrates,human
1
Hepeviridae,Bat hepevirus
—
JQ001749

Bat sapovirus TLC58/HK
NC_017936
vertebrates,human
1
Caliciviridae,Sapovirus,Bat sapovirus
—
JN899075

TLC58/HK

Bear Canyon virus
NC_010255
vertebrates,human
2
Arenaviridae,Arenavirus,Bear Canyon virus
seg. L
AY924390,AY216503

Bear Canyon virus
NC_010256
vertebrates,human
3
Arenaviridae,Arenavirus,Bear Canyon virus
seg. S
AF512833,AY924392,

AY924391

Beilong virus
NC_007803
vertebrates,human
1
Paramyxoviridae,Beilong virus
—
DQ100461

Bermejo virus
NC_003466
vertebrates,human
1
Bunyaviridae,Hantavirus,Andes virus
seg. S
AF482713

Blue River virus
NC_005215
vertebrates,human
2
Bunyaviridae,Hantavirus,Sin Nombre virus
seg. M
AF030551,AF030552

Borna disease virus
NC_001607
vertebrates,human
13
Bornaviridae,Bornavirus,Borna disease virus
—
AJ311522,AB032031,

AJ311523,AY114162,

AB258389,AB246670

,AY114161,L27077,E

U781967,U04608,AJ3

11521,AY114163,AJ3

11524

Bovine group C rotavirus
NC_007570
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus C
seg. 5
AB108680

Bovine group C rotavirus
NC_007571
vertebrates,human
2
Reoviridae,Rotavirus,Rotavirus C
seg. 8
AB108681,U31750

Bovine group C rotavirus
NC_007574
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus C
seg. 4
U26552

Bovine parainfluenza virus
NC_002161
vertebrates,human
11
Paramyxoviridae,Respirovirus,Bovine
—
EU277658,JQ063064

3

parainfluenza virus 3

,AXQ73601,AB77048

4,HQ530153,AF1786

55,JX969001,D84095

,AXQ73600,AF178654

,AB770485

Bovine respiratory syncytial
NC_001989
vertebrates,human
1
Paramyxoviridae,Pneumovirus,Bovine
—
AF092942

virus

respiratory syncytial virus

Bovine respiratory syncytial
NC_001989
vertebrates,human
1
Paramyxoviridae,Pneumovirus,Bovine
—
AF295543

virus ATCC51908

respiratory syncytial virus

Bovine rotavirus
NC_011500
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 5
HM363560

Bovine rotavirus
NC_011501
vertebrates,human
42
Reoviridae,Rotavirus,Rotavirus A
seg. 7
FJ206164,EU542719,

HM363562,EU54271

6,K02170,FJ206188,

EU542714,EU542715

,FJ206180,FJ206176,

EU542718,FJ206174,

FJ206181,FJ206184,

DQ494403,EU542717

,FJ206189,FJ206172,

FJ206165,FJ206179,

FJ206166,FJ206192,

FJ206185,FJ206178,

DQ494404,FJ206182,

FJ206171,FJ206191,

FJ206167,FJ206190,

FJ206186,FJ206175,

FJ206187,FJ206173,

FJ206226,FJ206168,

FJ206183,JX971577,

FJ206193,FJ206169,

FJ206170,FJ206177

Bovine rotavirus
NC_011502
vertebrates,human
41
Reoviridae,Rotavirus,Rotavirus A
seg. 8
EU542713,FJ206158,

FJ206139,DQ494402,

FJ206120,FJ206133,

FJ206148,FJ206116,

EU542711,FJ206136,

HM363561,FJ206118

,FJ206146,FJ206143,

EU542708,FJ206138,

FJ206130,FJ206131,

FJ206152,FJ206110,

FJ206122,FJ206123,

FJ206126,FJ206157,

FJ206108,FJ206134,

JX971576,FJ206128,

FJ206141,FJ206114,

FJ206125,EU542712,

FJ206150,EU542709,

FJ206155,EU542710,

DQ494401,FJ206154,

FJ206160,FJ206145,

FJ206112

Bovine rotavirus
NC_011503
vertebrates,human
49
Reoviridae,Rotavirus,Rotavirus A
seg. 9
FJ206037,FJ217204,

FJ206039,EU873014,

FJ206073,FJ206082,

GQ352366,FJ217205

,FJ206047,EU143711

,HQ199897,AB07705

4,FJ206057,FJ20606

8,FJ206079,FJ20605

8,AB077056,FJ20607

7,HM591496,HM2355

10,GQ352364,U5033

2,FJ206055,FJ20608

7,GQ352362,JX9715

74,AB077058,EU873

015,FJ206048,FJ206

072,FJ206085,FJ545

658,DQ494393,X526

50,AB077053,FJ2060

84,EU828784,EU873

013,FJ206088,FJ206

044,DQ494394,AB07

7055,FJ206049,FJ20

6070,AB077057,FJ20

6041,FJ206064,FJ20

6080,FJ206075

Bovine rotavirus
NC_011504
vertebrates,human
51
Reoviridae,Rotavirus,Rotavirus A
seg.
EU542721,FJ206109,

10
FJ206137,JX971578,

FJ206147,AF166354,

FJ206117,EU542722,

FJ206113,FJ206140,

FJ206111,FJ206144,

EU542723,DQ494398

,EU873006,DQ49439

7,FJ206135,EU82878

6,EU542720,FJ20612

7,FJ206151,FJ20610

7,AF166353,FJ20610

1,FJ206103,HM5914

94,FJ206129,EU5427

25,FJ206162,HM363

563,FJ206156,FJ206

115,FJ206132,EU542

724,FJ206161,EU873

007,FJ206119,FJ206

105,FJ206142,HM59

1492,FJ206121,EU87

3008,FJ206124,FJ20

6149,FJ206106,FJ20

6163,HM591493,FJ2

06159,FJ206153,FJ9

72713,FJ206104

Bovine rotavirus
NC_011505
vertebrates,human
41
Reoviridae,Rotavirus,Rotavirus A
seg.
FJ206045,FJ206050,

11
FJ206076,FJ206054,

FJ206071,FJ206061,

FJ206052,FJ206078,

EU542729,EU542731

,FJ206091,FJ206046,

EU542730,FJ206099,

FJ206059,FJ206083,

HM363564,FJ206096

,FJ206093,FJ206067,

DQ494399,FJ206069,

FJ206074,FJ206081,

FJ206056,FJ206090,

FJ206060,DQ494400,

FJ206065,EU542727,

FJ206092,EU542726,

FJ206089,FJ206100,

FJ206097,FJ206086,

FJ206063,FJ206094,

FJ206098,JX971579,

EU542728

Bovine rotavirus
NC_011506
vertebrates,human
2
Reoviridae,Rotavirus,Rotavirus A
seg. 2
X52589,JX971570

Bovine rotavirus
NC_011507
vertebrates,human
3
Reoviridae,Rotavirus,Rotavirus A
seg. 1
JX971569,X55444,JQ

4346

Bovine rotavirus
NC_011508
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 3
JX971571

Bovine rotavirus
NC_011509
vertebrates,human
5
Reoviridae,Rotavirus,Rotavirus A
seg. 6
EU873010,EU873011

,EU873012,K02254,J

X971573

Bovine rotavirus
NC_011510
vertebrates,human
2
Reoviridae,Rotavirus,Rotavirus A
seg. 4
JX971572,EU873009

Bovine rotavirus A
NC_011500
vertebrates,human
3
Reoviridae,Rotavirus,Rotavirus A
seg. 5
JF693063,JF693041,

JF693030

Bovine rotavirus A
NC_011501
vertebrates,human
3
Reoviridae,Rotavirus,Rotavirus A
seg. 7
JF693065,AB513838,

JF693043

Bovine rotavirus A
NC_011502
vertebrates,human
2
Reoviridae,Rotavirus,Rotavirus A
seg. 8
JF693066,JF693044

Bovine rotavirus A
NC_011503
vertebrates,human
26
Reoviridae,Rotavirus,Rotavirus A
seg. 9
JX470523,JF720877,

JF742652,AB513837,

JF693045,JF720878,

JX470522,JX470514,

JX470516,EF200563,

AB454421,JF693067,

EF200560,JX470519,

EF200549,JF689835,

JX470518,EF199501,

GU144587,JX470515

,JX470521,JX470517,

JF720882,JX470520,

AB486011,DQ487203

Bovine rotavirus A
NC_011504
vertebrates,human
11
Reoviridae,Rotavirus,Rotavirus A
seg.
JF693046,EF200578,

10
GU181282,EF200575

,EF200574,AY293829

,EF200576,EF200573

,EF592592,JF693068

,EF200572

Bovine rotavirus A
NC_011505
vertebrates,human
7
Reoviridae,Rotavirus,Rotavirus A
seg.
JF693047,EF200582,

11
JF693069,EF200580,

GU937876,EF200581

,EF200579

Bovine rotavirus A
NC_011506
vertebrates,human
3
Reoviridae,Rotavirus,Rotavirus A
seg. 2
JF693060,JF693027,

JF693038

Bovine rotavirus A
NC_011507
vertebrates,human
3
Reoviridae,Rotavirus,Rotavirus A
seg. 1
JF693059,JF693037,

JF693026

Bovine rotavirus A
NC_011508
vertebrates,human
4
Reoviridae,Rotavirus,Rotavirus A
seg. 3
AY300923,JF693061,

JF693039,JF693028

Bovine rotavirus A
NC_011509
vertebrates,human
11
Reoviridae,Rotavirus,Rotavirus A
seg. 6
JF720875,EF200569,

JF693064,JF720873,

JF742649,EF200568,

JF693042,JF720879,

EF200565,JF742650,

EF200567

Bovine rotavirus A
NC_011510
vertebrates,human
7
Reoviridae,Rotavirus,Rotavirus A
seg. 4
JF693040,JF693029,

AB513836,DQ838596

,AB454420,AB48601

0,JF693062

Bovine rotavirus B-11
NC_011510
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 4
AY047488

Bovine rotavirus G10
NC_011504
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg.
AY527227

10

Bovine rotavirus G15P11
NC_011505
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg.
EU682404

11

Bovine rotavirus G15P21
NC_011504
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg.
AY527226

10

Bovine rotavirus G6
NC_011501
vertebrates,human
4
Reoviridae,Rotavirus,Rotavirus A
seg. 7
AB748598,AB748600

,AB748597,AB74859

9

Bovine rotavirus G6
NC_011502
vertebrates,human
4
Reoviridae,Rotavirus,Rotavirus A
seg. 8
AB748594,AB748595

,AB748592,AB74859

3

Bovine rotavirus G6
NC_011504
vertebrates,human
4
Reoviridae,Rotavirus,Rotavirus A
seg.
AB748604,AB748603

10
,AB748605,AB74860

2

Bovine rotavirus strain
NC_011504
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg.
AF144804

BRV033

10

Bovine rotavirus strain RF
NC_011504
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg.
AY116593

10

Bovine rotavirus strain RF
NC_011508
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 3
AY116592

Buffalo rotavirus A 10733
NC_011503
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 9
AY281360

Buffalo rotavirus A 10733
NC_011505
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg.
EU659853

11

Bundibugyo ebolavirus
NC_014373
vertebrates,human
5
Filoviridae,Ebolavirus,Bundibugyo ebolavirus
—
KC545394,KC545393

,KC545396,FJ217161

,KC545395

CAS virus
NC_018481
vertebrates,human
1
Arenaviridae,CAS virus
seg. S
JQ71 7262

CAS virus
NC_018484
vertebrates,human
1
Arenaviridae,CAS virus
seg. L
JQ717261

Camberwell virus
NC_001959
vertebrates,human
1
Caliciviridae,Norovirus,Norwalk virus
—
AF145896

Canine distemper virus
NC_001921
vertebrates,human
43
Paramyxoviridae,Morbillivirus,Canine
—
AB490680,AB475099

distemper virus

,EU726268,AB82370

7,AB490672,AB6877

21,AB490674,AX453

976,AB753775,AY46

6011,KF914669,AF01

4953,EU716337,AF3

05419,AB476401,AB

475097,AB490676,A

Y386316,JN896331,A

B462810,AF164967,A

B823706,AB490678,

AB476402,AB490681

,GU138403,AY44335

0,AX453975,AB4906

70,AY386315,AY649

446,AB490679,AY44

5077,HM852904,AY5

42312,AX453977,HM

063009,HM046486,A

B753776,AB474397,J

N896987,AB687720,

KC427278

Canine distemper virus
NC_001921
vertebrates,human
1
Paramyxoviridae,Morbillivirus,Canine
—
AF378705

strain Onderstepoort

distemper virus

Canine rotavirus A79-
NC_011500
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 5
EU708940

10/G3P[3]

Canine rotavirus A79-
NC_011501
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 7
EU708941

10/G3P[3]

Canine rotavirus A79-
NC_011502
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 8
EU708942

10/G3P[3]

Canine rotavirus A79-
NC_011503
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 9
EU708939

10/G3P[3]

Canine rotavirus A79-
NC_011504
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg.
EU708943

10/G3P[3]

10

Canine rotavirus A79-
NC_011505
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg.
EU708944

10/G3P[3]

11

Canine rotavirus A79-
NC_011506
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 2
EU708935

10/G3P[3]

Canine rotavirus A79-
NC_011507
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 1
EU708934

10/G3P[3]

Canine rotavirus A79-
NC_011508
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 3
EU708936

10/G3P[3]

Canine rotavirus A79-
NC_011509
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 6
EU708938

10/G3P[3]

Canine rotavirus A79-
NC_011510
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 4
EU708937

10/G3P[3]

Canine rotavirus CU-1
NC_011500
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 5
EU708918

Canine rotavirus CU-1
NC_011501
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 7
EU708919

Canine rotavirus CU-1
NC_011502
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 8
EU708920

Canine rotavirus CU-1
NC_011503
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 9
EU708917

Canine rotavirus CU-1
NC_011504
vertebrates,human
2
Reoviridae,Rotavirus,Rotavirus A
seg.
AF144806,EU708921

10

Canine rotavirus CU-1
NC_011505
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg.
EU708922

11

Canine rotavirus CU-1
NC_011506
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 2
EU708913

Canine rotavirus CU-1
NC_011507
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 1
EU708912

Canine rotavirus CU-1
NC_011508
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 3
EU708914

Canine rotavirus CU-1
NC_011509
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 6
EU708916

Canine rotavirus CU-1
NC_011510
vertebrates,human
3
Reoviridae,Rotavirus,Rotavirus A
seg. 4
EU708915,D13401,L

20876

Canine rotavirus K9
NC_011500
vertebrates,human
2
Reoviridae,Rotavirus,Rotavirus A
seg. 5
AF111946,EU708929

Canine rotavirus K9
NC_011501
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 7
EU708930

Canine rotavirus K9
NC_011502
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 8
EU708931

Canine rotavirus K9
NC_011503
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 9
EU708928

Canine rotavirus K9
NC_011504
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg.
EU708932

10

Canine rotavirus K9
NC_011505
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg.
EU708933

11

Canine rotavirus K9
NC_011506
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 2
EU708924

Canine rotavirus K9
NC_011507
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 1
EU708923

Canine rotavirus K9
NC_011508
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 3
EU708925

Canine rotavirus K9
NC_011509
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 6
EU708927

Canine rotavirus K9
NC_011510
vertebrates,human
2
Reoviridae,Rotavirus,Rotavirus A
seg. 4
EU708926,D13400

Canine rotavirus RV198/95
NC_011503
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 9
AF271089

Canine rotavirus RV52/96
NC_011503
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 9
AF271090

Caprine rotavirus A
NC_011500
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 5
GU937883

Caprine rotavirus A
NC_011501
vertebrates,human
2
Reoviridae,Rotavirus,Rotavirus A
seg. 7
JQ004978,GU937885

Caprine rotavirus A
NC_011502
vertebrates,human
2
Reoviridae,Rotavirus,Rotavirus A
seg. 8
GU937884,JQ004977

Caprine rotavirus A
NC_011503
vertebrates,human
5
Reoviridae,Rotavirus,Rotavirus A
seg. 9
GU937882,GU93788

9,GU937891,JQ0049

75,AY128708

Caprine rotavirus A
NC_011504
vertebrates,human
2
Reoviridae,Rotavirus,Rotavirus A
seg.
GU937886,JQ004979

10

Caprine rotavirus A
NC_011505
vertebrates,human
2
Reoviridae,Rotavirus,Rotavirus A
seg.
JQ004980,GU937887

11

Caprine rotavirus A
NC_011506
vertebrates,human
2
Reoviridae,Rotavirus,Rotavirus A
seg. 2
JQ004971,GU937878

Caprine rotavirus A
NC_011507
vertebrates,human
2
Reoviridae,Rotavirus,Rotavirus A
seg. 1
JQ004970,GU937877

Caprine rotavirus A
NC_011508
vertebrates,human
2
Reoviridae,Rotavirus,Rotavirus A
seg. 3
JQ004972,GU937879

Caprine rotavirus A
NC_011509
vertebrates,human
2
Reoviridae,Rotavirus,Rotavirus A
seg. 6
GU937881,JQ004974

Caprine rotavirus A
NC_011510
vertebrates,human
2
Reoviridae,Rotavirus,Rotavirus A
seg. 4
GU937880,JQ004973

Chandipura virus
NC_020805
vertebrates,human
2
Rhabdoviridae,Vesiculovirus,Chandipura virus
—
GU212858,GU21285

6

Chandipura virus Dak AR D
NC_020805
vertebrates,human
1
Rhabdoviridae,Vesiculovirus,Chandipura virus
—
HM627187

111125

Chandipura virus IB An
NC_020805
vertebrates,human
1
Rhabdoviridae,Vesiculovirus,Chandipura virus
—
HM627186

9978

Chapare virus
NC_010562
vertebrates,human
1
Arenaviridae,Arenavirus,Chapare virus
seg. S
EU260463

Chapare virus
NC_010563
vertebrates,human
1
Arenaviridae,Arenavirus,Chapare virus
seg. L
EU260464

Chiba virus
NC_001959
vertebrates,human
1
Caliciviridae,Norovirus,Norwalk virus
—
AB042808

Civet SARS Coy 007/2004
NC_004718
vertebrates,human
1
Coronaviridae,Betacoronavirus,Severe acute
—
AY572034

respiratory syndrome-related coronavirus

Civet SARS Coy
NC_004718
vertebrates,human
1
Coronaviridae,Betacoronavirus,Severe acute
—
AY304488

SZ16/2003

respiratory syndrome-related coronavirus

Civet SARS Coy SZ3/2003
NC_004718
vertebrates,human
1
Coronaviridae,Betacoronavirus,Severe acute
—
AY304486

respiratory syndrome-related coronavirus

Colobus guereza
NC_015692
vertebrates,human
1
Papillomaviridae,Betapapillomavirus,Colobus
—
GU014533

papillomavirus type 2

monkey papillomavirus

Convict Creek 107 virus
NC_005215
vertebrates,human
2
Bunyaviridae,Hantavirus,Sin Nombre virus
seg. M
L33684,L33474

Convict Creek 107 virus
NC_005216
vertebrates,human
2
Bunyaviridae,Hantavirus,Sin Nombre virus
seg. S
U47135,L33816

Convict Creek 107 virus
NC_005217
vertebrates,human
1
Bunyaviridae,Hantavirus,Sin Nombre virus
seg. L
AF425256

Cote d'Ivoire ebolavirus
NC_014372
vertebrates,human
1
Filoviridae,Ebolavirus,Tai Forest ebolavirus
—
FJ217162

Coxsackievirus A16
NC_001612
vertebrates,human
22
Picornaviridae,Enterovirus,Enterovirus A
—
KC755235,KF193630

,KF193622,KF193629

,KC755234,KC75522

8,KF193628,KF19362

0,KC755232,KF1936

24,KF193625,KC755

230,KF193621,KF193

631,KC755233,KC75

5229,KF193632,KC5

07895,KF193623,KC

755231,KF193627,KF

193626

Coxsackievirus A2
NC_001612
vertebrates,human
4
Picornaviridae,Enterovirus,Enterovirus A
—
JX867332,JX867331,

JX867333,JX867330

Coxsackievirus A24
NC_002058
vertebrates,human
1
Picornaviridae,Enterovirus,Enterovirus C
—
KF725085

Coxsackievirus A7
NC_001612
vertebrates,human
4
Picornaviridae,Enterovirus,Enterovirus A
—
GU942820,GU94282

3,GU942821,GU9428

22

Cupixi virus
NC_010252
vertebrates,human
1
Arenaviridae,Arenavirus,Cupixi virus
seg. L
AY216519

Cupixi virus
NC_010254
vertebrates,human
1
Arenaviridae,Arenavirus,Cupixi virus
seg. S
AF512832

Cutthroat trout virus
NC_015521
vertebrates,human
1
Hepeviridae,Cutthroat trout virus
—
HQ731075

Dobrava-Belgrade virus
NC_005233
vertebrates,human
15
Bunyaviridae,Hantavirus,Dobrava-Belgrade
seg. S
AY961615,AY533120

virus

,AY961618,AY53311

8,AJQ09775,JQ02620

4,AJQ09773,AJ41061

5,AF442622,AJ13167

3,JF920150,AY16857

6,AJ131672, L41916,

AJ410619

Dobrava-Belgrade virus
NC_005234
vertebrates,human
8
Bunyaviridae,Hantavirus,Dobrava-Belgrade
seg. M
AY961616,AY168577

virus

,AJQ09774,AY168578

,JQ026205,JF920149

,AJ410616, L33685

Dobrava-Belgrade virus
NC_005235
vertebrates,human
3
Bunyaviridae,Hantavirus,Dobrava-Belgrade
seg. L
AJ410617,JQ026206,

virus

JF920148

Dolphin morbillivirus
NC_005283
vertebrates,human
1
Paramyxoviridae,Morbillivirus,Cetacean
—
AJ608288

morbillivirus

Duvenhage virus
NC_020810
vertebrates,human
4
Rhabdoviridae,Lyssavirus,Duvenhage virus
—
EU293120,EU293119

,EU623444,JN986749

Ebola virus-Mayinga,
NC_002549
vertebrates,human
1
Filoviridae,Ebolavirus,Zaire ebolavirus
—
AF086833

Zaire, 1976

Echovirus 1 (strain Faroukl
NC_001472
vertebrates,human
1
Picornaviridae,Enterovirus,Enterovirus B
—
AF029859

ATCC VR-1038)

Echovirus 9 (strain Barty)
NC_001472
vertebrates,human
1
Picornaviridae,Enterovirus,Enterovirus B
—
X92886

Echovirus 9 (strain Hill)
NC_001472
vertebrates,human
1
Picornaviridae,Enterovirus,Enterovirus B
—
X84981

Echovirus E25
NC_001472
vertebrates,human
1
Picornaviridae,Enterovirus,Enterovirus B
—
JX976772

Echovirus E30
NC_001472
vertebrates,human
6
Picornaviridae,Enterovirus,Enterovirus B
—
KC897073,JX854435,

JX976773,EF066392,

EF066391,AY948442

Echovirus E6
NC_001472
vertebrates,human
9
Picornaviridae,Enterovirus,Enterovirus B
—
JQ929657,JX976771,

KF042343,AB705309,

KF042342,AB705311,

AB705308,AB705310

,JQ801 739

Echovirus E9
NC_001472
vertebrates,human
4
Picornaviridae,Enterovirus,Enterovirus B
—
KC238668,JN596587,

KC238669,KC238667

Enterovirus
NC_001612
vertebrates,human
1
Picornaviridae,Enterovirus,Enterovirus A
—
AF352027

5666/5in/002209

Enterovirus
NC_001612
vertebrates,human
1
Picornaviridae,Enterovirus,Enterovirus A
—
AF316321

5865/5in/000009

Enterovirus A
NC_001612
vertebrates,human
1
Picornaviridae,Enterovirus,Enterovirus A
—
U05876

Enterovirus A71
NC_001612
vertebrates,human
28
Picornaviridae,Enterovirus,Enterovirus A
—
AB747374,AB747373

,KC296444,KF13448

6,KF142412,KF31245

7,KC296445,KF1424

11,KF142413,AB7473

75,KC436270,KF668

443,KC954664,KF15

4355,KC954662,KC4

36271,KC436268,KC

436272,KC570452,K

C436269,KC296443,

KC436266,KC954663

,KC570453,KC43626

7,KC436265,JQ5147

85,KF501389

Enterovirus B
NC_001472
vertebrates,human
5
Picornaviridae,Enterovirus,Enterovirus B
—
KC568448,KC568449

,KC568447,KC56844

6,M16560

Enterovirus B87
NC_001472
vertebrates,human
1
Picornaviridae,Enterovirus,Enterovirus B
—
KC292019

Enterovirus B97
NC_001472
vertebrates,human
1
Picornaviridae,Enterovirus,Enterovirus B
—
GU550508

Enterovirus CA55-1988
NC_001472
vertebrates,human
1
Picornaviridae,Enterovirus,Enterovirus B
—
AF241359

Enterovirus Yanbian 96-
NC_001472
vertebrates,human
1
Picornaviridae,Enterovirus,Enterovirus B
—
AF230973

83csf

Equine rotavirus A
NC_011500
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 5
JXQ36371

Equine rotavirus A
NC_011501
vertebrates,human
6
Reoviridae,Rotavirus,Rotavirus A
seg. 7
KC815700,JXQ36373,

JQ309143,KC815677

,KC815688,KC81566

6

Equine rotavirus A
NC_011502
vertebrates,human
6
Reoviridae,Rotavirus,Rotavirus A
seg. 8
JQ309142,KC815665

,KC815687,KC81567

6,JXQ36372,KC81569

9

Equine rotavirus A
NC_011503
vertebrates,human
14
Reoviridae,Rotavirus,Rotavirus A
seg. 9
KC815674,AB595975

,AY750925,AB59597

6,AB595979,AB5959

78,AB595977,L49042

,JXQ36370,L49043,A

B595974,AY750924,

KC815685,KC815663

Equine rotavirus A
NC_011504
vertebrates,human
5
Reoviridae,Rotavirus,Rotavirus A
seg.
KC815689,KC815667

10
,JXQ36374,KC815701

,KC815678

Equine rotavirus A
NC_011505
vertebrates,human
3
Reoviridae,Rotavirus,Rotavirus A
seg.
KC815668,JXQ36375,

11
JQ309144

Equine rotavirus A
NC_011506
vertebrates,human
6
Reoviridae,Rotavirus,Rotavirus A
seg. 2
KC815681,JXQ36366,

JQ309139,KC815695

,KC815659,KC81567

0

Equine rotavirus A
NC_011507
vertebrates,human
6
Reoviridae,Rotavirus,Rotavirus A
seg. 1
KC815680,JQ309138

,KC815694,KC81566

9,KC815658,JXQ3636

5

Equine rotavirus A
NC_011508
vertebrates,human
7
Reoviridae,Rotavirus,Rotavirus A
seg. 3
KC815696,JXQ36367,

KC815660,KC815671

,KC815682,JQ30914

0,AY277922

Equine rotavirus A
NC_011509
vertebrates,human
5
Reoviridae,Rotavirus,Rotavirus A
seg. 6
KC815697,KC815662

,JXQ36369,KC815673

,KC815684

Equine rotavirus A
NC_011510
vertebrates,human
3
Reoviridae,Rotavirus,Rotavirus A
seg. 4
KC815672,KC815661

,KC815683

European bat lyssavirus 1
NC_009527
vertebrates,human
8
Rhabdoviridae,Lyssavirus,European bat
—
KF042301,EU626551

lyssavirus 1

,KF042302,EF157976

,EU293112,KF15500

3,EU626552,EU2931

09

European bat lyssavirus 2
NC_009528
vertebrates,human
3
Rhabdoviridae,Lyssavirus,European bat
—
KF155004,EF157977,

lyssavirus 2

EU293114

Fer-de-lance virus
NC_005084
vertebrates,human
1
Paramyxoviridae,Ferlavirus,Fer-de-Lance
—
AY141760

paramyxovirus

Ferret hepatitis E virus
NC_001434
vertebrates,human
2
Hepeviridae,Hepevirus,Hepatitis E virus
—
JN998606,JN998607

Flexal virus
NC_010757
vertebrates,human
2
Arenaviridae,Arenavirus,Flexal virus
seg. S
AF512831,AF485257

Flexal virus
NC_010759
vertebrates,human
1
Arenaviridae,Arenavirus,Flexal virus
seg. L
EU627611

GB virus C
NC_001710
vertebrates,human
48
Flaviviridae,Pegivirus,GB virus C
—
KC618398,AB013500

,JN127373,D87710,A

Y949771,U45966,D8

7712,AF031828,U444

02,D87263,AB003293

,U75356,D90600,AF0

06500,AB008335,D87

711,AF121950,U3638

0,HQ331233,AB0135

01,AB003289,AB0O8

342,D87708,AF08178

2,KC618399,AB0186

67,AB008336,KC618

401,AF031827,AF031

829,AF104403,AB003

288,U63715,HQ3312

35,AB003292,D87255

,D87715,KC618400,U

94695,D90601 ,D8771

3,AB003290,D87262,

HQ331234,AB021287

,D87714,D87709,AY1

96904

GB virus C variant
NC_001710
vertebrates,human
1
Flaviviridae,Pegivirus,GB virus C
—
AF070476

troglodytes

Giant panda rotavirus A
NC_011502
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 8
GU188281

Giant panda rotavirus A
NC_011504
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg.
GU188282

10

Giant panda rotavirus A
NC_011505
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg.
GU329526

11

Giant panda rotavirus A
NC_011506
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 2
HQ641294

Golden Gate virus
NC_018482
vertebrates,human
1
Arenaviridae,Golden Gate virus
seg. L
JQ717263

Golden Gate virus
NC_018483
vertebrates,human
1
Arenaviridae,Golden Gate virus
seg. S
JQ717264

Goose paramyxovirus
NC_005036
vertebrates,human
1
Paramyxoviridae,Avulavirus,Goose

AF473851

SF02

paramyxovirus SF02

Guanarito virus
NC_005077
vertebrates,human
3
Arenaviridae,Arenavirus,Guanarito virus
seg. S
AY129247,AY497548

,AF485258

Guanarito virus
NC_005082
vertebrates,human
2
Arenaviridae,Arenavirus,Guanarito virus
seg. L
AY216504,AY358024

HBV genotype A
NC_003977
vertebrates,human
1
Hepadnaviridae,Orthohepadnavirus,Hepatitis
—
AP007263

B virus

HBV genotype Al
NC_003977
vertebrates,human
6
Hepadnaviridae,Orthohepadnavirus,Hepatitis
—
HE974375,HE974381

B virus

,HE974370,HE97436

3,HE974365,HE9743

62

HBV genotype A2
NC_003977
vertebrates,human
6
Hepadnaviridae,Orthohepadnavirus,Hepatitis
—
HE974383,HE974364

B virus

,HE974371,HE97437

4,HE974376,HE9743

67

HBV genotype B
NC_003977
vertebrates,human
3
Hepadnaviridae,Orthohepadnavirus,Hepatitis
—
AB602818,AB554017

B virus

,AB540582

HBV genotype C
NC_003977
vertebrates,human
19
Hepadnaviridae,Orthohepadnavirus,Hepatitis
—
AB554020,AB540585

B virus

,AB644286,AB64428

7,AB644280,AB5540

21,AB644281,AB560

662,AB644284,AB55

4014,AB560661,AB5

54019,AB644283,AB

554025,AB540584,A

B554022,AB554015,

AB540583,AB554018

HBV genotype D
NC_003977
vertebrates,human
4
Hepadnaviridae,Orthohepadnavirus,Hepatitis
—
HE815465,AB554016

B virus

,AB554024,AB55402

3

HBV genotype D3
NC_003977
vertebrates,human
2
Hepadnaviridae,Orthohepadnavirus,Hepatitis
—
HE974377,HE974379

B virus

HBV genotype D4
NC_003977
vertebrates,human
4
Hepadnaviridae,Orthohepadnavirus,Hepatitis
—
HE974372,HE974378

B virus

,HE974373,HE97438

2

HBV genotype E
NC_003977
vertebrates,human
3
Hepadnaviridae,Orthohepadnavirus,Hepatitis
—
HE974384,HE974380

B virus

,AP007262

HBV genotype F2
NC_003977
vertebrates,human
2
Hepadnaviridae,Orthohepadnavirus,Hepatitis
—
HE974366,HE974369

B virus

HBV genotype F4
NC_003977
vertebrates,human
1
Hepadnaviridae,Orthohepadnavirus,Hepatitis
—
HE974368

B virus

HBV genotype G
NC_003977
vertebrates,human
1
Hepadnaviridae,Orthohepadnavirus,Hepatitis
—
AP007264

B virus

HBV genotype H
NC_003977
vertebrates,human
6
Hepadnaviridae,Orthohepadnavirus,Hepatitis
—
AB516393,AB516395

B virus

,AP007261,AB51639

4,AB846650,AB2983

62

HBV recombinant B/C
NC_003977
vertebrates,human
1
Hepadnaviridae,Orthohepadnavirus,Hepatitis
—
AB644282

B virus

HBV recombinant C/G
NC_003977
vertebrates,human
1
Hepadnaviridae,Orthohepadnavirus,Hepatitis
—
AB644285

B virus

HIV-1 CRF03_AB
NC_001802
vertebrates,human
1
Retroviridae,Lentivirus,Human
—
AF193276

immunodeficiency virus 1

HIV-1 CRF04_cpx
NC_001802
vertebrates,human
1
Retroviridae,Lentivirus,Human
—
AF049337

immunodeficiency virus 1

HIV-1 M_02CD,KS069
NC_001802
vertebrates,human
1
Retroviridae,Lentivirus,Human
—
FM877780

immunodeficiency virus 1

HIV-1 M_02CD,LBTB032
NC_001802
vertebrates,human
1
Retroviridae,Lentivirus,Human
—
FM877779

immunodeficiency virus 1

HIV-1 M_02CD,LBTB084
NC_001802
vertebrates,human
1
Retroviridae,Lentivirus,Human
—
FM877781

immunodeficiency virus 1

HIV-1 M_02CD,MBTB047
NC_001802
vertebrates,human
1
Retroviridae,Lentivirus,Human
—
FM877782

immunodeficiency virus 1

HIV-1 M_97CD,KFE267
NC_001802
vertebrates,human
1
Retroviridae,Lentivirus,Human
—
FM877778

immunodeficiency virus 1

HIV-1 M_97CD,KTB119
NC_001802
vertebrates,human
1
Retroviridae,Lentivirus,Human
—
FM877777

immunodeficiency virus 1

HIV-1 M_97CD,MBFE250
NC_001802
vertebrates,human
1
Retroviridae,Lentivirus,Human
—
FM877783

immunodeficiency virus 1

Hantaan virus
NC_005218
vertebrates,human
25
Bunyaviridae,Hantavirus,Hantaan virus
seg. S
AF427322,AF427324,

JQ665905,AY748309,

AF321094,D25533,A

Y017064,U37768,M1

4626,EF595840,HQ6

11981,AF427318,AB6

20031,JQ665906,AF4

27320,AB127998,D25

530,AF427319,AB027

111,AB027097,AF321

095,AB027101,DQ65

8415,AF427323,AY83

9871

Hantaan virus
NC_005219
vertebrates,human
16
Bunyaviridae,Hantavirus,Hantaan virus
seg. M
JQ665881,AB027115,

EU074224,AB127995

,AB030232,AB62003

2,U37729,D25532,Y0

0386,L08753,EU0746

72,U38177,AF345636

,M14627,D25529,JQ6

65882

Hantaan virus
NC_005222
vertebrates,human
6
Bunyaviridae,Hantavirus,Hantaan virus
seg. L
D25528,AB620033,D

25531,X55901,DQ98

9237,AF336826

Hantaan virus 84FLi
NC_005218
vertebrates,human
1
Bunyaviridae,Hantavirus,Hantaan virus
seg. S
AF366568

Hantaan virus 84FLi
NC_005219
vertebrates,human
1
Bunyaviridae,Hantavirus,Hantaan virus
seg. M
AF366569

Hantaan virus A16
NC_005218
vertebrates,human
1
Bunyaviridae,Hantavirus,Hantaan virus
seg. S
AF288646

Hantaan virus A16
NC_005219
vertebrates,human
1
Bunyaviridae,Hantavirus,Hantaan virus
seg. M
AF288645

Hantaan virus A9
NC_005219
vertebrates,human
1
Bunyaviridae,Hantavirus,Hantaan virus
seg. M
AF035831

Hantaan virus CA09082007
NC_005218
vertebrates,human
1
Bunyaviridae,Hantavirus,Hantaan virus
seg. S
HQ834499

Hantaan virus CA10081109
NC_005218
vertebrates,human
1
Bunyaviridae,Hantavirus,Hantaan virus
seg. S
HQ834500

Hantaan virus CA10081113
NC_005218
vertebrates,human
1
Bunyaviridae,Hantavirus,Hantaan virus
seg. S
HQ834501

Hantaan virus CA10081203
NC_005218
vertebrates,human
1
Bunyaviridae,Hantavirus,Hantaan virus
seg. S
HQ834502

Hantaan virus CA10081206
NC_005218
vertebrates,human
1
Bunyaviridae,Hantavirus,Hantaan virus
seg. S
HQ834503

Hantaan virus CA10081708
NC_005218
vertebrates,human
1
Bunyaviridae,Hantavirus,Hantaan virus
seg. S
HQ834504

Hantaan virus CA10081905
NC_005218
vertebrates,human
1
Bunyaviridae,Hantavirus,Hantaan virus
seg. S
HQ834505

Hantaan virus E142
NC_005218
vertebrates,human
1
Bunyaviridae,Hantavirus,Hantaan virus
seg. S
AF288644

Hantaan virus H10150
NC_005218
vertebrates,human
1
Bunyaviridae,Hantavirus,Hantaan virus
seg. S
HQ834506

Hantaan virus Lee
NC_005219
vertebrates,human
1
Bunyaviridae,Hantavirus,Hantaan virus
seg. M
DQ0377

Hantaan virus N8
NC_005219
vertebrates,human
1
Bunyaviridae,Hantavirus,Hantaan virus
seg. M
EF077656

Hantaan virus P09072
NC_005218
vertebrates,human
1
Bunyaviridae,Hantavirus,Hantaan virus
seg. S
HQ834507

Hantaan virus 032
NC_005219
vertebrates,human
1
Bunyaviridae,Hantavirus,Hantaan virus
seg. M
DQ371905

Hantaan virus 032
NC_005222
vertebrates,human
1
Bunyaviridae,Hantavirus,Hantaan virus
seg. L
DQ371906

Hantaanvirus CGAa1011
NC_005218
vertebrates,human
1
Bunyaviridae,Hantavirus,Hantaan virus
seg. S
EF990913

Hantaanvirus CGAa1011
NC_005219
vertebrates,human
1
Bunyaviridae,Hantavirus,Hantaan virus
seg. M
EF990927

Hantaanvirus CGAa1015
NC_005218
vertebrates,human
1
Bunyaviridae,Hantavirus,Hantaan virus
seg. S
EF990912

Hantaanvirus CGAa1015
NC_005219
vertebrates,human
1
Bunyaviridae,Hantavirus,Hantaan virus
seg. M
EF990926

Hantaanvirus CGAa2
NC_005218
vertebrates,human
1
Bunyaviridae,Hantavirus,Hantaan virus
seg. S
EU092219

Hantaanvirus CGAa2
NC_005219
vertebrates,human
1
Bunyaviridae,Hantavirus,Hantaan virus
seg. M
EU092223

Hantaanvirus CGAa31MP7
NC_005218
vertebrates,human
1
Bunyaviridae,Hantavirus,Hantaan virus
seg. S
EF990911

Hantaanvirus CGAa31MP7
NC_005219
vertebrates,human
1
Bunyaviridae,Hantavirus,Hantaan virus
seg. M
EF990925

Hantaanvirus CGAa31P9
NC_005218
vertebrates,human
1
Bunyaviridae,Hantavirus,Hantaan virus
seg. S
EF990910

Hantaanvirus CGAa31P9
NC_005219
vertebrates,human
1
Bunyaviridae,Hantavirus,Hantaan virus
seg. M
EF990924

Hantaanvirus CGAa4MP9
NC_005218
vertebrates,human
1
Bunyaviridae,Hantavirus,Hantaan virus
seg. S
EF990915

Hantaanvirus CGAa4MP9
NC_005219
vertebrates,human
1
Bunyaviridae,Hantavirus,Hantaan virus
seg. M
EF990929

Hantaanvirus CGAa4P15
NC_005218
vertebrates,human
1
Bunyaviridae,Hantavirus,Hantaan virus
seg. S
EF990914

Hantaanvirus CGAa4P15
NC_005219
vertebrates,human
1
Bunyaviridae,Hantavirus,Hantaan virus
seg. M
EF990928

Hantaanvirus CGAa75
NC_005218
vertebrates,human
1
Bunyaviridae,Hantavirus,Hantaan virus
seg. S
EU092220

Hantaanvirus CGAa75
NC_005219
vertebrates,human
1
Bunyaviridae,Hantavirus,Hantaan virus
seg. M
EU092224

Hantaanvirus CGHu1
NC_005218
vertebrates,human
1
Bunyaviridae,Hantavirus,Hantaan virus
seg. S
EU092218

Hantaanvirus CGHu1
NC_005219
vertebrates,human
1
Bunyaviridae,Hantavirus,Hantaan virus
seg. M
EU092222

Hantaanvirus CGHu3612
NC_005218
vertebrates,human
1
Bunyaviridae,Hantavirus,Hantaan virus
seg. S
EF990909

Hantaanvirus CGHu3612
NC_005219
vertebrates,human
1
Bunyaviridae,Hantavirus,Hantaan virus
seg. M
EF990923

Hantaanvirus CGHu3614
NC_005218
vertebrates,human
1
Bunyaviridae,Hantavirus,Hantaan virus
seg. S
EF990908

Hantaanvirus CGHu3614
NC_005219
vertebrates,human
1
Bunyaviridae,Hantavirus,Hantaan virus
seg. M
EF990922

Hantaanvirus CGRn45
NC_005218
vertebrates,human
1
Bunyaviridae,Hantavirus,Hantaan virus
seg. S
EU092221

Hantaanvirus CGRn45
NC_005219
vertebrates,human
1
Bunyaviridae,Hantavirus,Hantaan virus
seg. M
EU092225

Hantaanvirus CGRn53
NC_005218
vertebrates,human
1
Bunyaviridae,Hantavirus,Hantaan virus
seg. S
EF990907

Hantaanvirus CGRn53
NC_005219
vertebrates,human
1
Bunyaviridae,Hantavirus,Hantaan virus
seg. M
EF990921

Hantaanvirus CGRn5310
NC_005218
vertebrates,human
1
Bunyaviridae,Hantavirus,Hantaan virus
seg. S
EF990906

Hantaanvirus CGRn5310
NC_005219
vertebrates,human
1
Bunyaviridae,Hantavirus,Hantaan virus
seg. M
EF990920

Hantaanvirus CGRn93MP8
NC_005218
vertebrates,human
1
Bunyaviridae,Hantavirus,Hantaan virus
seg. S
EF990905

Hantaanvirus CGRn93MP8
NC_005219
vertebrates,human
1
Bunyaviridae,Hantavirus,Hantaan virus
seg. M
EF990919

Hantaanvirus CGRn93P8
NC_005218
vertebrates,human
1
Bunyaviridae,Hantavirus,Hantaan virus
seg. S
EF990904

Hantaanvirus CGRn93P8
NC_005219
vertebrates,human
1
Bunyaviridae,Hantavirus,Hantaan virus
seg. M
EF990918

Hantavirus CJAp93
NC_005218
vertebrates,human
1
Bunyaviridae,Hantavirus,Hantaan virus
seg. S
EF208929

Hantavirus CJAp93
NC_005219
vertebrates,human
1
Bunyaviridae,Hantavirus,Hantaan virus
seg. M
EF208930

Hantavirus Gou3-v9
NC_005236
vertebrates,human
1
Bunyaviridae,Hantavirus,Seoul virus
seg. S
AF288651

Hantavirus LR1
NC_005218
vertebrates,human
1
Bunyaviridae,Hantavirus,Hantaan virus
seg. S
AF288294

Hantavirus LR1
NC_005219
vertebrates,human
1
Bunyaviridae,Hantavirus,Hantaan virus
seg. M
AF288293

Hantavirus LR1
NC_005222
vertebrates,human
1
Bunyaviridae,Hantavirus,Hantaan virus
seg. L
AF288292

Hantavirus RG9
NC_005218
vertebrates,human
1
Bunyaviridae,Hantavirus,Hantaan virus
seg. S
AF288296

Hantavirus S85-46
NC_005218
vertebrates,human
1
Bunyaviridae,Hantavirus,Hantaan virus
seg. S
AF288659

Hantavirus S85-46
NC_005219
vertebrates,human
1
Bunyaviridae,Hantavirus,Hantaan virus
seg. M
AF288658

Hantavirus SN7
NC_005218
vertebrates,human
1
Bunyaviridae,Hantavirus,Hantaan virus
seg. S
AF288657

Hantavirus SN7
NC_005219
vertebrates,human
1
Bunyaviridae,Hantavirus,Hantaan virus
seg. M
AF288656

Hantavirus Z10
NC_006433
vertebrates,human
2
Bunyaviridae,Hantavirus,Hantavirus Z10
seg. S
EF533944,AF184987

Hantavirus Z10
NC_006435
vertebrates,human
1
Bunyaviridae,Hantavirus,Hantavirus Z10
seg. L
AF189155

Hantavirus Z10
NC_006437
vertebrates,human
2
Bunyaviridae,Hantavirus,Hantavirus Z10
seg. M
AF276987,AF143675

Hantavirus Z37
NC_005236
vertebrates,human
1
Bunyaviridae,Hantavirus,Seoul virus
seg. S
AF187082

Hantavirus Z37
NC_005237
vertebrates,human
2
Bunyaviridae,Hantavirus,Seoul virus
seg. M
AF187081,AF190119

Hantavirus Z37
NC_005238
vertebrates,human
1
Bunyaviridae,Hantavirus,Seoul virus
seg. L
AF285266

Hantavirus strain CJilin93
NC_005219
vertebrates,human
1
Bunyaviridae,Hantavirus,Hantaan virus
seg. M
AY748307

Hantavirus strain YU61
NC_005218
vertebrates,human
1
Bunyaviridae,Hantavirus,Hantaan virus
seg. S
AY748308

Hawaii calicivirus
NC_001959
vertebrates,human
1
Caliciviridae,Norovirus,Norwalk virus

U07611

Hendra virus
NC_001906
vertebrates,human
13
Paramyxoviridae,Henipavirus,Hendra virus
—
HM044318,HM04432

1,JN255801,HM0443

20,JN255802,JN2558

06,JN255800,HM044

317,JN255805,HM04

4319,JN255803,AF01

7149,JN255804

Hepatitis B virus
NC_003977
vertebrates,human
5003
Hepadnaviridae,Orthohepadnavirus,Hepatitis
—
GQ377610,X59795,J

B virus

0040171,JN257172,

EU306678,EU916228

,AB014372,JN040759

,GU456658,JXQ2687

7,AF418690,AY80039

1,AY738144,AB1959

42,DQ823093,AB205

191,GQ183474,AB33

0372,JN792915,AB01

4389,DQ089760,JN6

42143,AB900109,FJ3

86642,EU306702,JQ

801498,EU306680,H

M750150,HQ700441,

DQ993702,JN040762

,AB287317,AB67441

1,GU815656,JX5072

13,AJ627218,KC5106

56,DQ975273,EU939

675,HM750147,FJ34

9240,JF828932,FN59

4754,GQ161801,AF2

23960,JN040772,HM

011478,GU456681,A

B036918,FJ562245,G

U815755,GU815599,

GQ161785,DQ46379

6,GU456648,KC8753

22,EU564825,AJ1315

71,HM011497,FJ787

447,GU815746,EU57

9443,JN040805,L139

94,AB670307,FJ1514

13,GQ377584,GQ183

468,GQ924621,AB36

7425,GU815632,EU9

16204,AB675683,AB

036915,EU871978,D

0448619,JXQ96952,F

J904419,EU717212,D

0304551,JN257179,F

JQ32334,AY934763,G

U815620,GQ377632,

EU787444,HQ646553

,GQ205379,FJ34920

9,AB670273,EU7172

15,EU522067,AB111

113,EU916206,JN664

919,JN257189,AB670

265,HM117851,GQ47

5320,GU456640,AY8

62868,FJ692559,FJ7

87482,GU815726,HM

750136,GQ377556,A

B116093,HM585196,

AB670244,AF143302,

GQ924647,AY040627

,GQ477455,AB11111

5,JQ429079,AY09045

8,GQ477497,EU8719

95,AB119252,AB270

535,FJ709459,JF440

004,GU815657,DQ08

9794,AB073840,FJ56

2297,GU815565,FJ56

2308,GQ161829,FN5

94763,AM494700,GU

815692,AY167092,E

U305540,JX429903,A

Y161150,FJQ23659,A

B485808,AB900106,

HQ603073,JXQ79936

,DQ089804,FJ386613

,EU871973,AB48580

9,AB670305,JQ02732

9,AB198081,AY6415

63,AB112408,HQ700

504,FJ349211,FJ904

435,FJ899761,D5052

0,AY217366,HQ7005

18,AB674423,FJ5622

62,GQ377561,AB010

292,FJ692568,AB367

409,X97849,JN63046

3,GU332696,JQ0401

39,FJ904430,HM363

576,JX898690,JN040

775,DQ089768,FJ349

237,DQ089782,AB01

4378,FJ562231,JQ68

7533,AY330913,FJ34

9222,AB219427,AY8

00249,HM363603,FJ

562328,EU306694,FJ

562320,JX898686,FJ

386630,JN040787,AB

480041,AB198077,AF

418686,AM494716,FJ

692598,EU414137,FJ

023670,HQ700522,A

Y738140,AB670261,J

F491450,JN792900,J

N040758,EF473977,

AY090460,JF754611,

DQ993697,FJ899785,

AB048705,AB367429

,HM363573,FJ89976

4,FJ787471,AB67443

4,AB453982,EU3066

81,JX504545,AB2463

40,GQ377614,EU939

632,DQ478885,AB49

3836,AJ627228,AY64

1559,GU815575,JQO

40132,JN642167,HQ

700482,AF461357,G

U815627,AB116079,J

F491454,KC875342,

EU859949,FJ692579,

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0,AY934770,AB674425,JF

440003,EU939572,DQ536

411,GQ377583,HM363600,

EU939548,JF754592,AB05

6513,JN642142,GQ205378

,AB116654,GQ161781,AB2

74979,HQ603074,AB1949

50,JN642131,FJ904397,FN

545830,DQ788725,GQ377

535,EU439009,HM011496,

JF754607,HQ700523,GQ4

75341,GQ924650,JN04082

9,HQ700466,AB675678,AP

011100,D50518,EU939616

,AB287319,FJ882617,JN66

4927,AB014386,JQ040147

,GQ205389,KC875294,JN0

40796,EU916215,JX42991

8,GQ377594,FJ349227,AY

034878,EU306675,HQ700

538,GU332691,AY817511,

EU939608,FJ562270,JX87

0001,AY233275,GQ47535

3,DQ823086,AB287326,AB

642095,FJQ32337,DQ7887

29,AB900103,FJ692606,FJ

692576,AB287322,GU815

678,GQ377633,AB697510,

FR714497,JF754588,AB36

7804,AJ131956,HE981171

,EU881996,AB064312,AY9

34767,AB112063,GQ3775

98,EU547559,AB900111,A

B775198,GU815700,FJ562

317,JN664926,JX504542,F

J882612,DQ536412,GQ37

7617,AB222713,AF363962

,KC510660,JN811656,GQ4

75329,HQ700530,AB3674

03,JN792912,AB670272,J

N664938,AB073834,AJ627

225,AF223958,JF439995,A

B298720,GU815691,DQ06

0822,HM011485,AB11387

8,GQ161799,JN257159,AF

411410,AY217364,EU7874

38,FJ882610,AP011107,G

0924658,EU859919,AJ627

220,GQ377642,D16666,AB

031262,AY902768,JN8274

21,DQ060830,DQ899145,E

U872007,JQ040125,AB106

884,GQ477477,DQ315784,

GU815554,DQ463798,GU5

63560,JN642130,FJ78746

4,EU871981,HM585198,AF

233236,AB670264,AB2749

76,AB195944,HM363598,G

0161805,FJ787468,JN040

756,AB670291,HQ603077,

DQ899150,DQ993698,JN0

40786,EU859902,AB03355

7,GQ377616,AB713527,G

0377603,AY596102,GU81

5742,AY123041,AB697511

,AB555501,AB033552,AB0

73821,GU815593,AB1111

16,GQ477495,EU660228,J

F440009,HM011469,GQ92

4608,AY934765,AM49469

8,FJ904429,AB275308,FJ6

92575,AY033072,GU8157

82,EU939576,JQ801513,F

J562284,JF754635,JN7929

01,FJ692561,AY739674,A

B674433,FJ709457,AB670

255,DQ995804,JN257205,

KC875267,AB176643,AB2

22708,GU815703,JX50721

2,EU859923,GQ205386,H

0236015,FJ562251,AY306

136,EU939637,EU859953,

GU815597,FJ562236,GQ4

77488,GQ161765,AB0902

70,DQ995802,FJQ23672,J

N664941,AY090456,DQ53

6410,GU563558,JN040794

,JN257191,GQ477492,GQ

377581,AF418682,FJ9043

94,EF576812,GQ475343,J

N257156,AB111114,EU93

9676,EU939552,FJ562315,

GQ377643,JF440015,AY7

81181,GU815757,FJQ2365

4,AB195956,GQ475333,H

M363566,JN642126,FJ787

483,FJ787453,AB375164,

HM117850,EU306670,AY1

61142,GQ377532,JN04077

3,AB270547,JX429913,HE

981173,FJQ23636,AB3751

62,AB111123,HM363587,J

F828920,AP011086,HQ70

0525,AY862860,AY167094

,GQ259588,FJ562232,FJ7

87443,GQ477469,JN66492

9,KC875332,EU487257,JQ

027326,AB113879,AB1959

51,FJQ23644,JX504541,D

0993681,D50521,HM0114

99,FN545828,AB562462,A

B367421,EU306674,FJ882

613,AJ344117,JQ801502,

AB195933,AY935700,AB6

70240,AF043594,JF43692

2,AB073823,AB367430,GU

332690,EU306690,JXQ969

57,GQ377641,JN040810,A

B675675,AB116552,JXQ26

883,GQ161834,FJ386580,

GU456643,X98074,FN594

767,JF440007,FJ562338,H

M011491,S50225,FJ69259

5,JX898698,EU919172,FN

545829,AM494709,GU815

586,GU815669,EU939583,

JN040822,AP011105,GU8

15743,EU939577,AB69749

1,JQ027327,AB486012,AB

365445,FJ386656,AF1212

46,JQ801478,JN257209,H

M750146,AB670308,GQ20

5383,AF143301,AF241409

,AB026811,AB670278,AB2

70543,GQ205440,AB6703

11,GQ377543,JF828908,E

U554537,JQ040163,JQ801

474,AB300362,EU939537,

EU871975,FJQ32353,DQ9

93686,AB493839,EF49438

0,JN040788,AB119254,JQ

023663,AY161149,HQ700

533,GQ475344,JN642129,

FJQ23638,FJ349218,AF22

3956,JN664931,HQ833466

,GQ183464,EU306708,JQO

27332,JF439998,EU78743

5,GU815698,FJQ32347,AY

163869,DQ478889,DQ448

623,FJ692590,EU871976,

EU717218,DQ980551,AY9

02772,GQ377538,FJ38661

6,AY934769,JN182326,HM

363583,GU456666,GQ475

355,FJ904445,AY862862,

AY233276,GQ161816,AB3

02095,FJ562280,JQ02731

6,GU815774,KC510642,H

M363610,JQ801477,FJ562

259,AY862863,GQ377635,

HQ700501,GQ358139,FJ5

62277,GQ924657,EU1558

27,KC875257,DQ463795,J

N642154,JN257183,KC510

653,AY090452,JQ688403,

JN257169,GQ924645,JN6

64943,FJ692572,GU81568

3,EU916234,FJ904442,FJO

23635,JN664928,AB07382

5,GU815552,FJQ23655,HM

011489,FJQ23674,EU4141

39,AB014384,GU815721,E

U306685,AM494694,EU93

9657,GU815644,JN642157

,EF494377,XQ2763,AB194

948,JQ040156,GQ161808,

FJ386600,AY167090,AB64

2094,AY596107,EU921419

,GQ161753,KC875340,GU

815732,DQ089783,AB900

105,AM494706,AY330917,

AB493835,AY206379,GQ1

83480,JN827417,FJ56231

2,AB073852,EU916213,AY

596109,FJ349207,AB1160

90,FM209514,AY934771,A

Y596112,AB493832,EU93

9545,EU916221,GU81558

8,AB670302,AY311370,AM

494714,AY217371,GQ377

634,AY161147,EU155893,

JX507215,AB367801,AF46

1360,EU570069,KF679989

,GQ475305,AF363963,EU9

19170,HQ833469,JN25719

3,DQ980548,AJ344116,AB

219533,KC875253,AB3678

00,AY721611,KF425556,K

C875276,AB246343,DQ47

8890,AB674436,JN664940

,AF458665,GQ477463,AM

184126,EU594404,FJ9044

11,AB697487,HM585197,E

U306722,AF222323,JN257

192,FJ386663,HMO11484,

JN664915,GQ377566,AB6

42092,FJ562247,FN59475

7,EU560441,KC875307,AB

300371,FJ692580,EU8720

16,GQ161806,GU815684,

AB670303,GQ477502,AB1

95953,GQ377522,AY7381

41,JQ040137,FJ692566,E

U859938,FJ386662,FJ904

404,FJ562295,EU306696,

HQ603064,FJ386598,AB36

7422,DQ315776,DQ99369

0,JN040769,AY233277,EU

522068,EU306718,AY1670

96,FJ692607,GU456650,A

B697501,FJ386611,AB287

325,AB562463,FJ386670,

GQ161821,AB014395,AF4

18678,EF494381,AY93477

3,AB205127,HQ700481,FJ

904444,GU332694,AB670

276,AB480038,JQ801510,

AB033559,AB195937,DQO

60826,HE981180,FJ38662

1,AB188244,FJQ23663,JN6

42136,GU815561,FJ56230

0,GQ161791,HM750151,E

U939666,JF828918,AM494

708,AB365450,DQ993691,

EU660224,JF436921,KC51

0647,FR714495,GQ35813

7,JQ429078,AB076679,FJ

023650,EU916210,EU4390

06,KC875256,DQ980547,D

0089798,GQ377615,DQ47

8887,JF754631,JQ801493,

AB073857,FJ386679,GQ4

77457,DQ993696,D16665,

HM750138,JX429899,DQ9

93700,EU939618,AM4947

15,JQ688404,JF754608,G

U815740,JF828928,AF282

918,GQ477500,DQ111986,

AB453986,EU158262,FJ58

9065,EU589340,AB073833

,GU815771,EU306701,EU

871996,AB300363,AB0738

47,GQ161758,FM209516,A

Y741795,EU859926,EU93

9561,AB056515,AB674409

,FJ899763,AB900116,GQ3

77606,EU306727,GQ1834

70,DQ788728,HQ700521,

GQ477468,EU306692,JN0

40763,HM627320,GQ3775

14,JN257216,KC875321,G

0475356,FJ787459,AF458

664,AB274977,FJ899771,F

J562235,HM363569,JN040

795,AY902777,AY206383,

EU660232,U87746,GQ924

609,AF297625,GU815730,

HQ700494,FJ692612,AY21

7368,HM011470,EU93967

3,GQ477480,D23682,GQ3

77597,AB288026,JN04077

9,FJ562238,GQ475314,JN

642138,X80925,GQ475310

,EU939559,GU815614,EU

547561,JXQ26884,GU4566

79,JN664910,FJ386647,FJ

023640,KF061168,AB0738

32,EU919173,GQ161771,H

0603062,AF160501,GQ92

4626,KC012652,EU239226

,GU815556,AB100695,EU5

70067,GQ161784,JN79289

3,GQ377578,HQ833471,H

0700493,FJ899768,GQ22

7697,HM011501,JF491455

,DQ463789,AB205118,FJ3

86657,FJ589068,AB69749

0,AM295797,FJQ32343,GQ

377531,JQ801507,AB2705

46,AB195946,FJ904447,J

0801501,FJ518811,EU306

679,AB026814,JN257195,

KC510658,FJQ23657,FJ88

2616,AB210820,DQ46379

0,AB109476,HM363585,K

C875338,JQ664509,GU81

5571,HQ603080,GQ16179

6,DQ078791,GQ872210,G

U815577,FJ692602,AY161

162,FJ787448,AY220697,

AY945307,HM590472,FM1

99981,EU522074,HM3635

94,FR714494,FJ692581,A

Y161160,EU185789,AB11

1119,AM494704,AM18062

4,GU456659,JN040809,EU

939544,JF491456,EU9162

05,AY161140,FJ562227,G

0377549,KF425555,HM14

6131,AB014394,DQ82309

4,GQ477470,AB198076,AF

241408,AF536524,JN2571

50,FN594769,JN664920,J

N257185,AY641561

Hepatitis B virus
NC_003977
vertebrates,human
1
Hepadnaviridae,Orthohepadnavirus,Hepatitis
—
FJ361772

146/Thailand

B virus

Hepatitis B virus
NC_003977
vertebrates,human
1
Hepadnaviridae,Orthohepadnavirus,Hepatitis
—
AB267090

ayw/Japan/Ehime 22-

B virus

HS/2005

Hepatitis B virus
NC_003977
vertebrates,human
1
Hepadnaviridae,Orthohepadnavirus,Hepatitis
—
HF571060

subgenotype A3/genotype

B virus

E

Hepatitis B virus subtype
NC_003977
vertebrates,human
2
Hepadnaviridae,Orthohepadnavirus,Hepatitis
—
AB176642,AB299858

adr

B virus

Hepatitis B virus subtype
NC_003977
vertebrates,human
3
Hepadnaviridae,Orthohepadnavirus,Hepatitis
—
DQ0331,DQ0330,DQ0

adw

B virus

329

Hepatitis B virus subtype
NC_003977
vertebrates,human
1
Hepadnaviridae,Orthohepadnavirus,Hepatitis
—
AM282986

adw2

B virus

Hepatitis C virus
NC_009827
vertebrates,human
269
Flaviviridae,Hepacivirus,Hepatitis C virus
—
HQ738645,EU362892

,NC_00982

,EU362907,JXQ14307

6,NC_0098

,KC155254,JX183554

25,NC_009

,FJ407092,FJ462433,

824,NC_00

AB047645,HQ850284

4102,NC_0

,AB049096,DQ41878

09823

5,EF407480,JF73511

3,EF407418,AB08029

9,D89815,KC197235,

EF407451,EF407438,

EU246930,EU362903

,D13558,EU362881,D

45172,EU246933,DQ

988075,FJ462441,AB

049093,JF735117,AM

408911,KC248196,E

U362895,FJ462436,A

B049098,EF407460,A

B559564,JX183557,D

0988076,AJQ00009,K

C197227,EU158186,

EU362876,EF407465

,JF735120,AJ278830,

KF700370,EF407440,

FJ462440,EF407469,

AB049094,EU362897

,,D50481,JF735123,E

U362893,EF407431,

EF632071,KC197236

,JF735116,EF026073

,D11168,EF632069,A

B047643,JF735112,K

C197232,EU362883,

X61596,FJ839869,FN

666428,D63857,EF40

7444,EU362887,EF4

07482,DQ988077,JF7

35110,EF407422,AB0

49099,EU246939,D8

9872,DQ988073,DQ2

78892,EF407504,EF4

,07502,EF407428,KC

197228,EU362877,D

30613,JX183558,D50

484,AB049100,EU36

2885,EU362901,EF4

07425,AB049101,EU

362898,EF407476,EF

407488,JX183553,EF

407436,EF407457,K

C197237,D90208,EF

407445,AF511950,FJ

462438,KC197238,D

85516,D50485,KC19

7240,EF407471,AB67

7529,EF407472,FJ46

,2434,HQ850285,DQ9

88078,AB677527,JX1

83555,EF407449,JF7

35115,KC248194,EF

407415,KC197229,J

Q745651,EU362902,

EF407432,JF735114,

KC197234,EF407417

,EF407427,JX183556

,EF407470,EF407456

,EF407454,D10750,K

C248199,EU362891,J

F735119,AB435162,A

F511949,EF407447,K

C197239,EF407423,

,AJ851228,AB677531,

EF407446,EU362880

,JX183551,KC967478

,KC197233,EU36290

0,FJ462439,EF40749

7,AB049090,EU6438

34,JF735122,HQ8502

87,EF407492,EF4074

55,DQ0944,FJQ25855

,KC197231,KC96747

6,EU246935,AB0490

92,JF735125,AB0490

89,EU362896,AB016

785,D11355,JF73511

1,AB047644,EF40742

,1,EF632070,EF40741

3,EF407452,FJ46243

1,EF407479,EF40748

5,DQ437509,AB1913

33,FJ435090,EF4075

03,EF407441,HQ850

290,GU294484,EF40

7483,AB049087,AB4

29050,DQ988074,FJ8

39870,EU643836,D5

0482,EF407487,AB04

9091,HQ850283,HQ8

50282,EF407439,AB0

47640,KC248198,KC

197230,EU362884,E

,F407437,AB622121,

D10934,EF407442,K

C248195,FJ462432,K

C967479,JX183552,E

U362894,EF407493,

EF407435,EF407414,

FJ462437,EF407453,

FJ462435,KC197226,

HQ850286,AB049088

,D50480,EF407426,E

F407443,EF407501,H

M777359,EF407450,

DQ988079,EF407461

,X76918,JF735121,K

C248197,EF407448,

,AJ132997,AB677533,

D10988,AY651061,A

B047641,AB049095,

EU408327,FJQ25856,

EF407411,EF407434,

AB049097,EF407419,

EU362886,D10749,H

0850288,D14484,FJO

25854,JF735118,EU3

62890,AJ132996,EF4

07475,AY587845,KC

248193,JX183549,AF

511948,EF407424,E

U362899,JF735124,E

U362879,EU362878,

EU362882,KC967477

,JX183550,EF407433

,EU408326,EU64383

5,AB047642,D50483

Hepatitis C virus (isolate
NC_009827
vertebrates,human
1
Flaviviridae,Hepacivirus,Hepatitis C virus
—
AY859526

6a33)
,NC_00982

6,NC_0098

25,NC_009

824,NC_00

4102,NC_0

09823

Hepatitis C virus (isolate
NC_009827
vertebrates,human
1
Flaviviridae,Hepacivirus,Hepatitis C virus
—
D50409

BEBE1)
,NC_00982

6,NC_0098

25,NC_009

824,NC_00

4102,NC_0

09823

Hepatitis C virus (isolate
NC_009827
vertebrates,human
1
Flaviviridae,Hepacivirus,Hepatitis C virus
—
DQ155561

D54)
,NC_00982

6,NC_0098

25,NC_009

824,NC_00

4102,NC_0

09823

Hepatitis C virus (isolate
NC_009827
vertebrates,human
1
Flaviviridae,Hepacivirus,Hepatitis C virus
—
Y12083

EUHK2)
,NC_00982

6,NC_0098

25,NC_009

824,NC_00

4102,NC_0

09823

Hepatitis C virus (isolate
NC_009827
vertebrates,human
3
Flaviviridae,Hepacivirus,Hepatitis C virus
—
AF011752,AF011753,

H77)
,NC_00982

AF011751

6,NC_0098

25,NC_009

824,NC_00

4102,NC_0

09823

Hepatitis C virus (isolate
NC_009827
vertebrates,human
1
Flaviviridae,Hepacivirus,Hepatitis C virus
—
D14853

HC-G9)
,NC_00982

6,NC_0098

25,NC_009

824,NC_00

4102,NC_0

09823

Hepatitis C virus (isolate
NC_009827
vertebrates,human
1
Flaviviridae,Hepacivirus,Hepatitis C virus
—
D28917

HCV-K3a/650)
,NC_00982

6,NC_0098

25,NC_009

824,NC_00

4102,NC_0

09823

Hepatitis C virus (isolate
NC_009827
vertebrates,human
1
Flaviviridae,Hepacivirus,Hepatitis C virus
—
AY051292

India)
,NC_00982

6,NC_0098

25,NC_009

824,NC_00

4102,NC_0

09823

Hepatitis C virus (isolate
NC_009827
vertebrates,human
1
Flaviviridae,Hepacivirus,Hepatitis C virus
—
D63822

JK046)
,NC_00982

6,NC_0098

25,NC_009

824,NC_00

4102,NC_0

09823

Hepatitis C virus (isolate
NC_009827
vertebrates,human
1
Flaviviridae,Hepacivirus,Hepatitis C virus
—
D63821

JK049)
,NC_00982

6,NC_0098

25,NC_009

824,NC_00

4102,NC_0

09823

Hepatitis C virus (isolate
NC_009827
vertebrates,human
1
Flaviviridae,Hepacivirus,Hepatitis C virus
—
AB030907

JPUT971017)
,NC_00982

6,NC_0098

25,NC_009

824,NC_00

4102,NC_0

09823

Hepatitis C virus (isolate Tr
NC_009827
vertebrates,human
1
Flaviviridae,Hepacivirus,Hepatitis C virus
—
D49374

Kj)
,NC_00982

6,NC_0098

25,NC_009

824,NC_00

4102,NC_0

09823

Hepatitis C virus (isolate
NC_009827
vertebrates,human
1
Flaviviridae,Hepacivirus,Hepatitis C virus
—
AB031663

VAT96)
,NC_00982

6,NC_0098

25,NC_009

824,NC_00

4102,NC_0

09823

Hepatitis C virus (isolate
NC_009827
vertebrates,human
1
Flaviviridae,Hepacivirus,Hepatitis C virus
—
D84265

VN004)
,NC_00982

6,NC_0098

25,NC_009

824,NC_00

4102,NC_0

09823

Hepatitis C virus (isolate
NC_009827
vertebrates,human
1
Flaviviridae,Hepacivirus,Hepatitis C virus
—
D84263

VN235)
,NC_00982

6,NC_0098

25,NC_009

824,NC_00

4102,NC_0

09823

Hepatitis C virus (isolate
NC_009827
vertebrates,human
1
Flaviviridae,Hepacivirus,Hepatitis C virus
—
D84264

VN405)
,NC_00982

6,NC_0098

25,NC_009

824,NC_00

4102,NC_0

09823

Hepatitis C virus ED43
NC_009827
vertebrates,human
1
Flaviviridae,Hepacivirus,Hepatitis C virus
—
GU814265

,NC_00982

6,NC_0098

25,NC_009

824,NC_00

4102,NC_0

09823

Hepatitis C virus JFH-1
NC_009827
vertebrates,human
1
Flaviviridae,Hepacivirus,Hepatitis C virus
—
AB047639

,NC_00982

6,NC_0098

25,NC_009

824,NC_00

4102,NC_0

09823

Hepatitis C virus S52
NC_009827
vertebrates,human
1
Flaviviridae,Hepacivirus,Hepatitis C virus
—
GU814263

,NC_00982

6,NC_0098

25,NC_009

824,NC_00

4102,NC_0

09823

Hepatitis C virus SA13
NC_009827
vertebrates,human
1
Flaviviridae,Hepacivirus,Hepatitis C virus
—
AF064490

,NC_00982

6,NC_0098

25,NC_009

824,NC_00

4102,NC_0

09823

Hepatitis C virus genotype
NC_009827
vertebrates,human
1
Flaviviridae,Hepacivirus,Hepatitis C virus
—
JN588558

3
,NC_00982

6,NC_0098

25,NC_009

824,NC_00

4102,NC_0

09823

Hepatitis C virus genotype
NC_009827
vertebrates,human
3
Flaviviridae,Hepacivirus,Hepatitis C virus
—
D84262,KC844040,K

6
,NC_00982

C844039

6,NC_0098

25,NC_009

824,NC_00

4102,NC_0

09823

Hepatitis C virus isolate
NC_009827
vertebrates,human
1
Flaviviridae,Hepacivirus,Hepatitis C virus
—
AB558135

M2123
,NC_00982

6,NC_0098

25,NC_009

824,NC_00

4102,NC_0

09823

Hepatitis C virus strain
NC_009827
vertebrates,human
1
Flaviviridae,Hepacivirus,Hepatitis C virus
—
FJ821465

M21-2k/1b
,NC_00982

6,NC_0098

25,NC_009

824,NC_00

4102,NC_0

09823

Hepatitis C virus subtype
NC_009827
vertebrates,human
435
Flaviviridae,Hepacivirus,Hepatitis C virus
—
EU255991,EU256013

la
,NC_00982

,EU155295,EU86282

6,NC_0098

8,EU256053,EU1552

25,NC_009

85,EU155323,EU781

824,NC_00

773,EU660384,EU66

4102,NC_0

0385,EU256028,EU2

09823

39716,EU255993,EU

155237,FJ390399,EU

155344,EU155252,FJ

024278,EU255965,E

U482862,FJQ24280,E

U256003,EU660383,

EU155349,EU255975

,JX463550,EU155314

,EU255937,EU25598

9,JX463563,EU48286

7,EU255994,FJQ2408

7,EU255945,EU2560

97,EU781781,EU256

106,EU482843,EU78

1790,EU256024,EU4

82836,EU781767,FJ3

90394,EU862823,FJ1

81999,AF271632,EU

155297,EU155268,E

U155270,JX463640,E

U155342,EU155213,

EU862836,EU255981

,EU255980,JX463599

,FJ205867,EU255943

,EU781774,EU78181

3,EU260396,EU7817

61,EU862834,EU482

841,EU482852,EU15

5215,EU256105,EU2

56086,EU256047,EU

781818,EU255964,E

U255946,EU155273,

EU482884,EU781805

,EU781754,EU48287

0,EU256096,EU2559

49,EU155293,EU482

838,EU529677,EU78

1780,EU256036,EU7

81814,EU256044,EU

862826,EU255976,E

U862824,EU155238,

EU155283,EU482844

,EF032886,EU78181

9,EU482889,EU1552

67,EU155243,EU155

348,M62321,FJ39039

5,EU256057,FJ41017

2,EU862827,EU2559

84,EU781783,EU781

749,EU687193,EU15

5378,EU482854,EU4

82863,EU255954,EU

155350,EU155313,E

U256050,EU256021,

EU155346,EU781806

,EU781810,EU25595

2,EU482832,EU7817

62,EU482856,EU255

959,EU155245,EU15

5355,EU781753,EU2

55938,EU781776,EU

155321,EU255929,E

F032890,EU482834,

EU255998,EU155343

,GQ149768,EU15523

9,EU255934,EU2560

58,EU255931,EU155

266,EU595697,EU26

0395,EU234064,EU4

82869,EU256033,EU

256071,EU155286,E

U155312,EU781820,

EU781816,EU256051

,EU781760,EU15531

0,EF621489,EU2559

85,EU781755,EU482

831,EU155244,EU25

6056,EU255958,EU1

55250,EU781765,EU

781800,EU529680,JX

463611,EU781792,E

U256049,EU256032,

EU256070,EU256025

,EU250017,EU15527

5,EU155248,EU2560

12,EU155288,EU781

809,AF290978,EU48

2848,JX463547,EU15

5236,EU781756,EU8

62839,EU155296,EU

256068,EF032900,E

U781823,EU482842,J

X463549,EU482840,

EU482882,EU256052

,EU256069,EU48285

0,EU781775,EU7817

95,EU256038,EU595

699,EU862841,JX463

596,EU781804,EU78

1778,EU781789,EU4

82858,EU482865,EU

256004,EU781768,A

B520610,EU255970,

EU155284,EU687194

,EU482872,EU48284

7,EU155271,EU2560

27,EU781779,EU155

354,EU482861,EU15

5352,EU256029,EU2

34065,EU256094,EU

255997,EU255977,FJ

024276,EU862838,E

U256008,EU155240,

EU862831,EU687195

,EU781808,EF03288

4,EU482878,EU4828

46,EU781796,EU155

233,EU256009,EU25

5942,EF032888,EU5

29678,EU255944,EU

155274,EU482855,E

U781803,EU155242,

EU155338,EU256014

,EU569723,EU48284

5,EU255992,EU2560

19,EU255978,EU781

794,EU256023,FJ205

869,EU781812,EU78

1822,EU255995,EU1

55345,EU256087,EU

255930,EF032885,E

U155353,EU255968,

EU255973,EU660387

,EU256040,FJ182000

,EU155347,EU78177

7,EU256011,EU7817

88,FJ205868,EU2561

07,FJQ24282,EU8628

32,EU255947,EU482

866,EU255967,EU25

6002,EU255927,EU1

55216,EU255990,EU

256104,EU781782,E

F032883,EU155379,

EU482835,EU256041

,EU482887,EU25600

6,EU256005,EU5956

98,EU255966,EU155

351,EU256037,EU48

2871,EU781784,EU2

56074,EU781769,EU

155339,EU781748,E

U781802,EU256034,

EU781807,EF032889

,EU155272,EU48287

3,EU255950,KC8440

49,EU781764,EU255

996,EU781770,EU25

5948,EU256048,EU2

55974,EU781791,EU

155277,EU781817,E

U155311,EU781793,

EU155291,EU256018

,EU781747,EU78176

3,EU256017,EU7817

87,EU256010,EU781

766,EU529681,EU78

1801,EU781752,EU2

55951,EU155269,EU

781772,EU256060,E

U155251,EU256043,

EU255936,EU155265

,EU781824,EU48286

8,EU256072,EU8628

40,EU155249,EU256

067,EU255928,EU25

5986,EU255939,EU7

81759,EU255941,EU

255982,EU155292,E

U482853,FJ182001,E

U256055,JX463616,E

U155278,EU255935,J

X463627,EU256095,

EU255987,EU155290

,EU781746,EU15531

9,EU155340,EU2559

40,EU529679,FJQ242

81,EU781751,EU155

282,EU569722,EU78

1798,EU256031,EU2

34063,EU155320,EU

255955,EU781757,E

U239715,FJQ24275,E

U781771,EU155380,

EU155247,EU255932

,EU255933,EU15529

4,EU781786,EF0328

87,EU155276,FJQ242

74,EU239713,EU781

785,EU529676,EU25

6026,EU256035,M67

463,JX463634,JX463

574,EU155322,EU78

1797,EU255957,EU4

82857,EU155299,JX4

63540,EU255963,EU

255953,EU255988,E

U256022,EU155341,

EU155214,EU255979

,EU155241,EU78175

0,EU255956,EU4828

64,EU256020,EU256

007,EU781821,EU25

6039,EU482876,EU2

56015,EU255999,EU

482837,EU781758,E

U155289,EU155246,

EU781811,EU155309

,EU781815,EU25603

0,EU155287,EU2559

83,EU155298,EU781

799,EU256046,EU25

5969

Hepatitis C virus subtype
NC_009827
vertebrates,human
269
Flaviviridae,Hepacivirus,Hepatitis C virus
—
AF356827,AF165060,

1b
,NC_00982

EU482880,EU155280

6,NC_0098

,AF165045,EU15536

25, NC_009

2,AB154206,AF17657

824,NC_00

3,EU155372,EU1552

4102,NC_0

20,EU660386,EU256

09823

065,EU155324,EU25

6099,EU155369,AB1

54185,AB154202,EU

155303,M96362,M84

754,EU256103,AB44

2222,EU256092,AB1

54182,AF165063,EU

155307,AB154191,K

C844051,AF483269,

EU256001,EU155279

,DQ071885,EU48288

5,EU155360,AB1541

92,AF207753,AB1541

86,EU155308,EU155

229,EU256054,EF03

2893,AF207763,AB15

4203,EU155356,EU2

56081,EU155264,AF

054250,AF207770,AF

165053,EU482886,A

B154181,EU256101,

EU256102,EU239714

,EU155221,AF33332

4,EU256077,EU2560

80,AB442221,EU155

262,AB154190,EU23

4061,EU155359,AF2

07755,EU255962,EU

155375,AF207771,E

U155230,EU255961,

AF207762,AB154187,

AB154200,EU155231

,AB442219,EU15522

6,EU155331,AF2077

56,EU155326,EU155

334,U16362,EU1553

16,EU256079,AF165

064,EU155367,U890

19,EU482877,AB442

220,AF208024,EU25

6100,EU256061,EU1

55332,AF207758,EU

155325,AY045702,E

U155258,AF165046,

EU781829,EU256082

,AF165048,AB154201

,AF207757,EU78182

6,EU155306,AF0542

48,AB691953,AF1650

54,EU781825,AF207

768,EU234062,EU48

2879,EU862837,EU2

56078,S62220,EU155

357,AF207774,EU25

6075,FJQ24277,AB15

4189,EU155368,AF1

65062,EU155257,AF

207769,EU256062,E

U256084,EU155364,

AF165050,FN435993,

EU155333,EU256090

,EU155259,AF20776

6,EU155373,AF2077

73,EF032892,AB1541

78,EU155281,AF207

759,EU256000,EU15

5318,EU155219,EU4

82881,FJ390396,AF1

65047,EU155366,M5

8335,EU482849,AF1

65051,EU256098,EU

482859,AF207760,AF

165056,EU155222,E

U256045,EU857431,

EU482839,AB154179

,AB154177,EU15536

1,AF165049,FJ47845

3,AF207754,EU1552

25,AF165052,FJQ240

86,EU529682,EU155

329,EU155365,EU25

6088,FJQ24279,EU15

5223,HQ912956,EU4

82875,AB426117,EU

155232,EU256076,E

U155376,AB154198,

EU155260,EU155302

,EU256066,EU15537

0,EU155337,L02836,

EU155377,AB154204

,EU155336,AF20776

1,EU155317,EU1552

53,EU155301,AF207

767,EU155328,AB77

9679,AF139594,EU1

55234,U45476,AF207

765,EU155304,EU78

1827,EU482883,AF0

54247,EU256083,EU

781831,AF165057,E

U482874,GU133617,

AF207752,EU155224

,AB154194,EU15526

3,EU155255,AY5878

44,EU155327,HQ912

958,EU255960,EU86

2835,AF054249,EU1

55330,EU155358,EU

155300,EU155218,E

U482860,EU155381,

EU155228,AF207772

,EU155261,EU15537

4,FJ390397,AB15419

9,EU781830,AF2077

64,EU155305,AF165

058,AY460204,EU25

6089,EF638081,AF16

5061,AB154180,EU7

81832,EU155227,AJ2

38799,EU155254,EU

256085,EU155335,K

C844052,EU482888,

AJ238800,EU155315,

AB154205,EU155363

,EU660388,AF16505

9,EU155371,HQ9129

59,EU482833,EU155

235,AB779562,EU25

6059,AB154183,EU7

81828,EU256064,EU

155256,EU155217,A

B249644,EU256091,

U01214,AF165055,FJ

390398,EU155382

Hepatitis C virus subtype
NC_009827
vertebrates,human
1
Flaviviridae,Hepacivirus,Hepatitis C virus
—
KC844047

lc
,NC_00982

6,NC_0098

25,NC_009

824,NC_00

4102,NC_0

09823

Hepatitis C virus subtype
NC_009827
vertebrates,human
1
Flaviviridae,Hepacivirus,Hepatitis C virus
—
AM910652

1g
,NC_00982

6,NC_0098

25,NC_009

824,NC_00

4102,NC_0

09823

Hepatitis C virus subtype
NC_009827
vertebrates,human
15
Flaviviridae,Hepacivirus,Hepatitis C virus
—
KF676351,AF169004,

2a
,NC_00982

AF238484,AB690461,

6,NC_0098

AF238485,AF169003,

25,NC_009

AF238482,KC844043

824,NC_00

,AF238481,AB690460

4102,NC_0

,AF238483,AF169002

09823

,KF676352,AF169005

,AY746460

Hepatitis C virus subtype
NC_009827
vertebrates,human
22
Flaviviridae,Hepacivirus,Hepatitis C virus
—
KC844048,AY232738

2b
,NC_00982

, ,AY232745,AY23273

6,NC_0098

, 3,AY232746,AY2327

25,NC_009

, 42,AY232735,AY232

824,NC_00

, 749,AY232747,AY23

4102,NC_0

, 2743,AY232734,AY2

09823

,32740,AY232737,AF2

38486,AY232732,AY

232731,AY232744,A

Y232730,AY232739,

AY232741,AY232736

,AY232748

Hepatitis C virus subtype 2f
NC_009827
vertebrates,human
2
Flaviviridae,Hepacivirus,Hepatitis C virus
—
KC844042,KC844050

,NC_00982

6,NC_0098

25,NC_009

824,NC_00

4102,NC_0

09823

Hepatitis C virus subtype
NC_009827
vertebrates,human
19
Flaviviridae,Hepacivirus,Hepatitis C virus
—
KF035124,AB792683,

3a
,NC_00982

JQ717255,KF035125,

6,NC_0098

KF035123,KC844041

25,NC_009

,JQ717256,JQ717258

824,NC_00

,GQ275355,JQ71725

4102,NC_0

9,AF046866,JQ71725

09823

7,JN714194,KF03512

7,JQ717254,KF03512

6,AB691595,AB6915

96,JQ717260

Hepatitis C virus subtype
NC_009827
vertebrates,human
1
Flaviviridae,Hepacivirus,Hepatitis C virus
—
KC844044

3b
,NC_00982

6,NC_0098

25,NC_009

824,NC_00

4102,NC_0

09823

Hepatitis C virus subtype
NC_009827
vertebrates,human
8
Flaviviridae,Hepacivirus,Hepatitis C virus
—
DQ418784,DQ41878

4a
,NC_00982

8,DQ418787,DQ5160

6,NC_0098

84,DQ418789,AB795

25,NC_009

432,DQ418783,DQ41

824,NC_00

8782

4102,NC_0

09823

Hepatitis C virus subtype
NC_009827
vertebrates,human
3
Flaviviridae,Hepacivirus,Hepatitis C virus
—
KC844045,DQ516083

4d
,NC_00982

,DQ418786

6,NC_0098

25,NC_009

824,NC_00

4102,NC_0

09823

Hepatitis C virus subtype 4f
NC_009827
vertebrates,human
2
Flaviviridae,Hepacivirus,Hepatitis C virus
—
EF589161,EF589160

,NC_00982

6,NC_0098

25,NC_009

824,NC_00

4102,NC_0

09823

Hepatitis C virus subtype
NC_009827
vertebrates,human
1
Flaviviridae,Hepacivirus,Hepatitis C virus
—
KC844046

5a
,NC_00982

6,NC_0098

25,NC_009

824,NC_00

4102,NC_0

09823

Hepatitis C virus subtype
NC_009827
vertebrates,human
15
Flaviviridae,Hepacivirus,Hepatitis C virus
—
DQ480519,DQ48052

6a
,NC_00982

1,DQ480518,DQ4805

6,NC_0098

20,KC844037,DQ480

25,NC_009

515,DQ480512,DQ48

824,NC_00

0514,DQ480523,DQ4

4102,NC_0

80513,KC844038,DQ

09823

480516,DQ480524,D

0480522,DQ480517

Hepatitis C virus subtype
NC_009827
vertebrates,human
1
Flaviviridae,Hepacivirus,Hepatitis C virus
—
EF424629

6c
,NC_00982

6,NC_0098

25,NC_009

824,NC_00

4102,NC_0

09823

Hepatitis C virus subtype
NC_009827
vertebrates,human
1
Flaviviridae,Hepacivirus,Hepatitis C virus
—
DQ314805

6e
,NC_00982

6,NC_0098

25,NC_009

824,NC_00

4102,NC_0

09823

Hepatitis C virus subtype 6f
NC_009827
vertebrates,human
2
Flaviviridae,Hepacivirus,Hepatitis C virus
—
DQ835764,DQ83576

,NC_00982

0

6,NC_0098

25,NC_009

824,NC_00

4102,NC_0

09823

Hepatitis C virus subtype
NC_009827
vertebrates,human
1
Flaviviridae,Hepacivirus,Hepatitis C virus
—
DQ314806

6g
,NC_00982

6,NC_0098

25,NC_009

824,NC_00

4102,NC_0

09823

Hepatitis C virus subtype 6i
NC_009827
vertebrates,human
2
Flaviviridae,Hepacivirus,Hepatitis C virus
—
DQ835762,DQ83577

,NC_00982

0

6,NC_0098

25,NC_009

824,NC_00

4102,NC_0

09823

Hepatitis C virus subtype 6j
NC_009827
vertebrates,human
2
Flaviviridae,Hepacivirus,Hepatitis C virus
—
DQ835769,DQ83576

,NC_00982

1

6,NC_0098

25,NC_009

824,NC_00

4102,NC_0

09823

Hepatitis C virus subtype
NC_009827
vertebrates,human
4
Flaviviridae,Hepacivirus,Hepatitis C virus
—
DQ278893,AY878651

6k
,NC_00982

,DQ278891,AY87865

6,NC_0098
0

25,NC_009

824,NC_00

4102,NC_0

09823

Hepatitis C virus subtype 61
NC_009827
vertebrates,human
1
Flaviviridae,Hepacivirus,Hepatitis C virus
—
EF424628

,NC_00982

6,NC_0098

25,NC_009

824,NC_00

4102,NC_0

09823

Hepatitis C virus subtype
NC_009827
vertebrates,human
4
Flaviviridae,Hepacivirus,Hepatitis C virus
—
DQ835767,DQ83576

6m
,NC_00982

3,DQ835766,DQ8357

6,NC_0098

65

25,NC_009

824,NC_00

4102,NC_0

09823

Hepatitis C virus subtype
NC_009827
vertebrates,human
3
Flaviviridae,Hepacivirus,Hepatitis C virus
—
DQ835768,DQ27889

6n
,NC_00982

4,AY878652

6,NC_0098

25,NC_009

824,NC_00

4102,NC_0

09823

Hepatitis C virus subtype
NC_009827
vertebrates,human
1
Flaviviridae,Hepacivirus,Hepatitis C virus
—
EF424627

6o
,NC_00982

6,NC_0098

25,NC_009

824,NC_00

4102,NC_0

09823

Hepatitis C virus subtype
NC_009827
vertebrates,human
1
Flaviviridae,Hepacivirus,Hepatitis C virus
—
EF424626

6p
,NC_00982

6,NC_0098

25,NC_009

824,NC_00

4102,NC_0

09823

Hepatitis C virus subtype
NC_009827
vertebrates,human
1
Flaviviridae,Hepacivirus,Hepatitis C virus
—
EF424625

6q
,NC_00982

6,NC_0098

25,NC_009

824,NC_00

4102,NC_0

09823

Hepatitis C virus subtype
NC_009827
vertebrates,human
2
Flaviviridae,Hepacivirus,Hepatitis C virus
—
EU798761,EU798760

6v
,NC_00982

6,NC_0098

25,NC_009

824,NC_00

4102,NC_0

09823

Hepatitis E virus
NC_001434
vertebrates,human
189
Hepeviridae,Hepevirus,Hepatitis E virus
—
AB189074,AB291963

,AB248521,AB78045

1,JF443719,DQ45007

2,AB222184,D11092,

AF051830,AB291966,

AB220971,AY575858

,FJ653660,AB369689

,AB290313,AF455784

,AB193177,AB07491

5,AF076239,X98292,

AB480825,AY723745

,JN906976,AB301710

,L08816,AB437316,J

F443725,JX121233,J

X565469,AB291967,

EF077630,M94177,E

F570133,AB291953,J

0953665,AB521805,J

0953664,AB443624,

AB362840,AB099347

,JQ655734,AB698654

,AB189073,M73218,J

F443721,AB443623,

HM439284,AB740220

,M80581,AB291952,J

F915746,AB630970,A

B291959,AB189072,

AB369688,AB222182

,KC492825,AB29195

7,AB443625,D11093,

JN906975,JN167537,

AB602441,AB220975

,JN906974,AY575859

,L25595,AB780452,A

B362839,JQ655733,A

B220972,JF443726,A

B856243,AB369690,

AB740221,FJ906895,

AB602440,AB189071

,AB291954,AB43731

7,AB220976,AB5917

33,AF444002,AB0749

17,AB573435,AB291

958,AB197673,JQ740

781,HQ709170,DQ45

9342,HQ389543,EU4

95148,AB591734,AB

425831,JQ953666,JQ

655735,AB291962,AF

185822,AB369687,FJ

527832,AB291965,A

Y204877,AB089824,

HQ634346,AB220978

,EU360977,AB74023

2,AB362842,AF45943

8,JF443724,AB36969

1,AB220973,AJ27210

8,JN167538,EU37546

3,AB220979,HQ3895

44,AB291955,AB236

320,GU937805,AB09

1395,AB602439,EU3

66959,AB108537,AB

091394,JF443723,AB

222183,AF060669,AB

074918,AB290312,D1

0330,AY575857,AB1

89075,AF444003,AB4

43627,AB437318,KC

618402,AB193176,G

U206559,AB291964,

AB074920,AB780453

,AB720035,JQ993308

,AB248520,AB43731

9,AB080575,JF44372

0,AB780450,AB2485

22,AB200239,AB246

676,JQ655736,JF443

717,FJ906896,JQ768

461,AB291951,L2554

7,AB291968,AB2209

77,FJ956757,AB0978

12,AY230202,AB630

971,FJ457024,AB291

956,AB720034,AB18

9070,FJ763142,JF44

3718,AB253420,AB2

20974,AB521806,AB

362843,AB291960,A

B425830,AB740222,

AB291961,FJ705359,

JF443722,AB362841,

AB197674,JN837481,

KC618403,AB193178

,AP003430,X99441,A

B443626,JX109834

Hepatitis E virus type 3
NC_001434
vertebrates,human
1
Hepeviridae,Hepevirus,Hepatitis E virus
—
AB593690

Hepatitis G virus isolate
NC_001710
vertebrates,human
1
Flaviviridae,Pegivirus,GB virus C
—
AF309966

PEI

Hepatitis delta virus
NC_001653
vertebrates,human
108
Deltavirus,Hepatitis delta virus
—
HQ005370,AM18332

9,HQ005365,AB0379

49,AB118842,M8491

7,AJ584849,AJ58484

4,HM046802,AB1188

49,AY633627,AB118

821,AB118839,AB11

8837,AB118829,M28

267,M92448,KF6605

98,AM183332,HQ005

364,AB118820,AB11

8832,EF514905,DQ10

75,M58629,AB11881

8,AB118833,AJ30707

7,AB037948,U81989,

HQ005366,AB118827

,AY648956,HQ00537

1,AM183331,HF6794

05,AY648958,AB118

844,HQ005367,AY26

1460,GU177114,AJ5

84845,AB118846,AB

118845,AB118826,A

B118840,AY648953,

X85253,AB037947,A

B118836,AB118838,

AY648957,AF104263,

AY648959,AB118830

,AB118819,AY64895

5,AB088679,AB1188

41,AJ584848,EF5149

07,AB118843,XQ4451

,KF660602,AB118822

,KC590319,EF51490

4,L22066,AF104264,

HQ005369,AM18332

7,EF514906,AB11884

8,AM183330,U81988,

AB118824,AY261458

,AJ584847,AB118823

,M21012,KF660599,

M55042,HF679406,A

M183333,AB118847,

AY261459,HQ005368

,AB118828,X77627,A

M183328,AJ584846,

AY261457,AJQ00558,

KF660600,AF098261,

AM183326,AB118831

,HQ005372,AB11882

5,AY648952,EF51490

3,AB118835,AF42564

5,HF679404,AY6489

54,KF660601,AB1188

34,AF425644

Hepatitis delta virus
NC_001653
vertebrates,human
1
Deltavirus,Hepatitis delta virus
—
AM902177

dFr2012

Hepatitis delta virus
NC_001653
vertebrates,human
1
Deltavirus,Hepatitis delta virus
—
AM902178

dFr2040

Hepatitis delta virus
NC_001653
vertebrates,human
1
Deltavirus,Hepatitis delta virus
—
AM902179

dFr2042

Hepatitis delta virus
NC_001653
vertebrates,human
1
Deltavirus,Hepatitis delta virus
—
AM902180

dFr2043

Hepatitis delta virus
NC_001653
vertebrates,human
1
Deltavirus,Hepatitis delta virus
—
AM902168

dFr2045

Hepatitis delta virus
NC_001653
vertebrates,human
1
Deltavirus,Hepatitis delta virus
—
AM779580

dFr2046

Hepatitis delta virus
NC_001653
vertebrates,human
1
Deltavirus,Hepatitis delta virus
—
AM902163

dFr2067

Hepatitis delta virus
NC_001653
vertebrates,human
1
Deltavirus,Hepatitis delta virus
—
AM779575

dFr2119

Hepatitis delta virus
NC_001653
vertebrates,human
1
Deltavirus,Hepatitis delta virus
—
AM902164

dFr2137

Hepatitis delta virus
NC_001653
vertebrates,human
1
Deltavirus,Hepatitis delta virus
—
AM902165

dFr2172

Hepatitis delta virus
NC_001653
vertebrates,human
1
Deltavirus,Hepatitis delta virus
—
AM902166

dFr2189

Hepatitis delta virus
NC_001653
vertebrates,human
1
Deltavirus,Hepatitis delta virus
—
AM902167

dFr2201

Hepatitis delta virus
NC_001653
vertebrates,human
1
Deltavirus,Hepatitis delta virus
—
AM902181

dFr2210

Hepatitis delta virus
NC_001653
vertebrates,human
1
Deltavirus,Hepatitis delta virus
—
AM902169

dFr2236

Hepatitis delta virus
NC_001653
vertebrates,human
1
Deltavirus,Hepatitis delta virus
—
AM779578

dFr2239b

Hepatitis delta virus
NC_001653
vertebrates,human
1
Deltavirus,Hepatitis delta virus
—
AM902170

dFr2244

Hepatitis delta virus
NC_001653
vertebrates,human
1
Deltavirus,Hepatitis delta virus
—
AM902171

dFr2258

Hepatitis delta virus
NC_001653
vertebrates,human
1
Deltavirus,Hepatitis delta virus
—
AM902172

dFr2264

Hepatitis delta virus
NC_001653
vertebrates,human
1
Deltavirus,Hepatitis delta virus
—
AM779577

dFr2284

Hepatitis delta virus
NC_001653
vertebrates,human
1
Deltavirus,Hepatitis delta virus
—
AM902173

dFr2380

Hepatitis delta virus
NC_001653
vertebrates,human
1
Deltavirus,Hepatitis delta virus
—
AM779579

dFr2395

Hepatitis delta virus
NC_001653
vertebrates,human
1
Deltavirus,Hepatitis delta virus
—
AM902174

dFr2404

Hepatitis delta virus
NC_001653
vertebrates,human
1
Deltavirus,Hepatitis delta virus
—
AM902175

dFr2406

Hepatitis delta virus
NC_001653
vertebrates,human
1
Deltavirus,Hepatitis delta virus
—
AM902176

dFr2411

Hepatitis delta virus
NC_001653
vertebrates,human
1
Deltavirus,Hepatitis delta virus
—
AM779576

dFr2544

Hepatitis delta virus dFr508
NC_001653
vertebrates,human
1
Deltavirus,Hepatitis delta virus
—
AM779574

Hepatitis delta virus dTk1
NC_001653
vertebrates,human
1
Deltavirus,Hepatitis delta virus
—
AM779581

Hepatitis delta virus dTk10
NC_001653
vertebrates,human
1
Deltavirus,Hepatitis delta virus
—
AM779583

Hepatitis delta virus dTk12
NC_001653
vertebrates,human
1
Deltavirus,Hepatitis delta virus
—
AM779595

Hepatitis delta virus dTk13
NC_001653
vertebrates,human
1
Deltavirus,Hepatitis delta virus
—
AM779593

Hepatitis delta virus dTk2
NC_001653
vertebrates,human
1
Deltavirus,Hepatitis delta virus
—
AM779597

Hepatitis delta virus dTk21
NC_001653
vertebrates,human
1
Deltavirus,Hepatitis delta virus
—
AM779596

Hepatitis delta virus dTk27
NC_001653
vertebrates,human
1
Deltavirus,Hepatitis delta virus
—
AM779594

Hepatitis delta virus dTk28
NC_001653
vertebrates,human
1
Deltavirus,Hepatitis delta virus
—
AM779586

Hepatitis delta virus dTk3
NC_001653
vertebrates,human
1
Deltavirus,Hepatitis delta virus
—
AM779589

Hepatitis delta virus dTk34
NC_001653
vertebrates,human
1
Deltavirus,Hepatitis delta virus
—
AM779582

Hepatitis delta virus dTk35
NC_001653
vertebrates,human
1
Deltavirus,Hepatitis delta virus
—
AM779590

Hepatitis delta virus dTk38

Hepatitis delta virus dTk4
NC_001653
vertebrates,human
1
Deltavirus,Hepatitis delta virus
—
AM779584

Hepatitis delta virus dTk5
NC_001653
vertebrates,human
1
Deltavirus,Hepatitis delta virus
—
AM779591

Hepatitis delta virus dTk6
NC_001653
vertebrates,human
1
Deltavirus,Hepatitis delta virus
—
AM779585

Hepatitis delta virus dTk7
NC_001653
vertebrates,human
1
Deltavirus,Hepatitis delta virus
—
AM779587

Hepatitis delta virus dTk8
NC_001653
vertebrates,human
1
Deltavirus,Hepatitis delta virus
—
AM779592

HoJo virus
NC_005219
vertebrates,human
1
Bunyaviridae,Hantavirus,Hantaan virus
seg. M
DQ0376

Horsepox virus
NC_006998
vertebrates,human
1
Poxviridae,Orthopoxvirus,Vaccinia virus
—
DQ792504

Hu39694 virus
NC_003467
vertebrates,human
1
Bunyaviridae,Hantavirus,Andes virus
seg. M
AF028023

Human Respiratory
NC_001781
vertebrates,human
1
Paramyxoviridae,Pneumovirus,Human
—
AY353550

syncytial virus 9320

respiratory syncytial virus

Human adenovirus 1
NC_001405
vertebrates,human
3
Adenoviridae,Mastadenovirus,Human
—
KF429744,KF268331,

adenovirus C

AF534906

Human adenovirus 11
NC_011202
vertebrates,human
2
Adenoviridae,Mastadenovirus,Human
—
FJ643676,AF532578

adenovirus B

Human adenovirus 11
NC_011203
vertebrates,human
2
Adenoviridae,Mastadenovirus,Human
—
FJ643676,AF532578

adenovirus B

Human adenovirus 11a
NC_011202
vertebrates,human
1
Adenoviridae,Mastadenovirus,Human
—
FJ597732

adenovirus B

Human adenovirus 11a
NC_011203
vertebrates,human
1
Adenoviridae,Mastadenovirus,Human
—
FJ597732

adenovirus B

Human adenovirus 14
NC_011202
vertebrates,human
4
Adenoviridae,Mastadenovirus,Human
—
FJ822614,JX892927,

adenovirus B

AY803294,JN032132

Human adenovirus 14
NC_011203
vertebrates,human
4
Adenoviridae,Mastadenovirus,Human
—
FJ822614,JX892927,

adenovirus B

AY803294,JN032132

Human adenovirus 15
NC_010956
vertebrates,human
3
Adenoviridae,Mastadenovirus,Human
—
AB562586,KF268201,

,NC_01295

adenovirus D

KF268329

9

Human adenovirus 16
NC_011202
vertebrates,human
2
Adenoviridae,Mastadenovirus,Human
—
JN860680,AY601636

adenovirus B

Human adenovirus 16
NC_011203
vertebrates,human
2
Adenoviridae,Mastadenovirus,Human
—
JN860680,AY601636

adenovirus B

Human adenovirus 17
NC_010956
vertebrates,human
3
Adenoviridae,Mastadenovirus,Human
—
KF268330,HQ910407

,NC_01295

adenovirus D

,AF108105

9

Human adenovirus 18
NC_001460
vertebrates,human
1
Adenoviridae,Mastadenovirus,Human
—
GU191019

adenovirus A

Human adenovirus 19
NC_010956
vertebrates,human
7
Adenoviridae,Mastadenovirus,Human
—
KF268323,EF121005,

,NC_01295

adenovirus D

AB448773,AB448774

9

,AB448772,AB44877

1,JQ326209

Human adenovirus 2
NC_001405
vertebrates,human
1
Adenoviridae,Mastadenovirus,Human
—
KF268310

adenovirus C

Human adenovirus 20
NC_010956
vertebrates,human
1
Adenoviridae,Mastadenovirus,Human
—
KF268207

,NC_01295

adenovirus D

9

Human adenovirus 21
NC_011202
vertebrates,human
1
Adenoviridae,Mastadenovirus,Human
—
AY601633

adenovirus B

Human adenovirus 21
NC_011203
vertebrates,human
1
Adenoviridae,Mastadenovirus,Human
—
AY601633

adenovirus B

Human adenovirus 22
NC_010956
vertebrates,human
2
Adenoviridae,Mastadenovirus,Human
—
FJ619037,FJ404771

,NC_01295

adenovirus D

9

Human adenovirus 23
NC_010956
vertebrates,human
1
Adenoviridae,Mastadenovirus,Human
—
KF279629

,NC_01295

adenovirus D

9

Human adenovirus 26
NC_010956
vertebrates,human
1
Adenoviridae,Mastadenovirus,Human
—
EF153474

,NC_01295

adenovirus D

9

Human adenovirus 28
NC_010956
vertebrates,human
2
Adenoviridae,Mastadenovirus,Human
—
KF268320,FJ824826

,NC_01295

adenovirus D

9

Human adenovirus 29
NC_010956
vertebrates,human
1
Adenoviridae,Mastadenovirus,Human
—
AB562587

,NC_01295

adenovirus D

9

Human adenovirus 3
NC_011202
vertebrates,human
7
Adenoviridae,Mastadenovirus,Human
—
KF268212,KF268210,

adenovirus B

KF268202,AY599834,

AY599836,KF268315,

KF429752

Human adenovirus 3
NC_011203
vertebrates,human
7
Adenoviridae,Mastadenovirus,Human
—
KF268212,KF268210,

adenovirus B

KF268202,AY599834,

AY599836,KF268315,

KF429752

Human adenovirus 3+11p
NC_011202
vertebrates,human
2
Adenoviridae,Mastadenovirus,Human
—
EF564600,EF564601

adenovirus B

Human adenovirus 3+11p
NC_011203
vertebrates,human
2
Adenoviridae,Mastadenovirus,Human
—
EF564600,EF564601

adenovirus B

Human adenovirus 3+7
NC_011202
vertebrates,human
1
Adenoviridae,Mastadenovirus,Human
—
JN860679

adenovirus B

Human adenovirus 3+7
NC_011203
vertebrates,human
1
Adenoviridae,Mastadenovirus,Human
—
JN860679

adenovirus B

Human adenovirus 3-16
NC_011202
vertebrates,human
1
Adenoviridae,Mastadenovirus,Human
—
JN860678

adenovirus B

Human adenovirus 3-16
NC_011203
vertebrates,human
1
Adenoviridae,Mastadenovirus,Human
—
JN860678

adenovirus B

Human adenovirus 30
NC_010956
vertebrates,human
1
Adenoviridae,Mastadenovirus,Human
—
KF268335

,NC_01295

adenovirus D

9

Human adenovirus 31
NC_001460
vertebrates,human
1
Adenoviridae,Mastadenovirus,Human
—
AM749299

adenovirus A

Human adenovirus 32
NC_010956
vertebrates,human
2
Adenoviridae,Mastadenovirus,Human
—
KF268325,KF268327

,NC_01295

adenovirus D

9

Human adenovirus 33
NC_010956
vertebrates,human
1
Adenoviridae,Mastadenovirus,Human
—
KF268322

,NC_01295

adenovirus D

9

Human adenovirus 34
NC_011202
vertebrates,human
2
Adenoviridae,Mastadenovirus,Human
—
KF268328,AY737797

adenovirus B

Human adenovirus 34
NC_011203
vertebrates,human
2
Adenoviridae,Mastadenovirus,Human
—
KF268328,AY737797

adenovirus B

Human adenovirus 35
NC_011202
vertebrates,human
2
Adenoviridae,Mastadenovirus,Human
—
AY128640,AY271307

adenovirus B

Human adenovirus 35
NC_011203
vertebrates,human
2
Adenoviridae,Mastadenovirus,Human
—
AY128640,AY271307

adenovirus B

Human adenovirus 36
NC_010956
vertebrates,human
1
Adenoviridae,Mastadenovirus,Human
—
GQ384080

,NC_01295

adenovirus D

9

Human adenovirus 37
NC_010956
vertebrates,human
9
Adenoviridae,Mastadenovirus,Human
—
AB448775,KF268208,

,NC_01295

adenovirus D

KF268324,AB448778,

9

AB448777,AB448776

,KF268203,DQ90090

0,KF268334

Human adenovirus 38
NC_010956
vertebrates,human
1
Adenoviridae,Mastadenovirus,Human
—
KF268312

,NC_01295

adenovirus D

9

Human adenovirus 4
NC_010956
vertebrates,human
1
Adenoviridae,Mastadenovirus,Human
—
KF268313

,NC_01295

adenovirus D

9

Human adenovirus 4
NC_011202
vertebrates,human
1
Adenoviridae,Mastadenovirus,Human
—
KF429748

adenovirus B

Human adenovirus 4
NC_011203
vertebrates,human
1
Adenoviridae,Mastadenovirus,Human
—
KF429748

adenovirus B

Human adenovirus 43
NC_010956
vertebrates,human
1
Adenoviridae,Mastadenovirus,Human
—
KC529648

,NC_01295

adenovirus D

9

Human adenovirus 46
NC_010956
vertebrates,human
3
Adenoviridae,Mastadenovirus,Human
—
KF268332,AY875648,

,NC_01295

adenovirus D

KF268211

9

Human adenovirus 48
NC_010956
vertebrates,human
1
Adenoviridae,Mastadenovirus,Human
—
EF153473

,NC_01295

adenovirus D

9

Human adenovirus 49
NC_010956
vertebrates,human
1
Adenoviridae,Mastadenovirus,Human
—
DQ393829

,NC_01295

adenovirus D

9

Human adenovirus 5
NC_001405
vertebrates,human
2
Adenoviridae,Mastadenovirus,Human
—
AY601635,M73260

adenovirus C

Human adenovirus 50
NC_011202
vertebrates,human
1
Adenoviridae,Mastadenovirus,Human
—
AY737798

adenovirus B

Human adenovirus 50
NC_011203
vertebrates,human
1
Adenoviridae,Mastadenovirus,Human
—
AY737798

adenovirus B

Human adenovirus 53
NC_010956
vertebrates,human
1
Adenoviridae,Mastadenovirus,Human
—
FJ169625

,NC_01295

adenovirus D

9

Human adenovirus 54
NC_010956
vertebrates,human
1
Adenoviridae,Mastadenovirus,Human
—
AB448770

,NC_01295

adenovirus D

9

Human adenovirus 55
NC_011202
vertebrates,human
3
Adenoviridae,Mastadenovirus,Human
—
JX123028,JX123029,

adenovirus B

JX123027

Human adenovirus 55
NC_011203
vertebrates,human
3
Adenoviridae,Mastadenovirus,Human
—
JX123028,JX123029,

adenovirus B

JX123027

Human adenovirus 56
NC_010956
vertebrates,human
1
Adenoviridae,Mastadenovirus,Human
—
KF268209

,NC_01295

adenovirus D

9

Human adenovirus 6
NC_001405
vertebrates,human
2
Adenoviridae,Mastadenovirus,Human
—
FJ349096,HQ413315

adenovirus C

Human adenovirus 60
NC_010956
vertebrates,human
1
Adenoviridae,Mastadenovirus,Human
—
HQ007053

MPW-2011
,NC_01295

adenovirus D

9

Human adenovirus 64
NC_010956
vertebrates,human
4
Adenoviridae,Mastadenovirus,Human
—
JQ326206,JQ326207,

,NC_01295

adenovirus D

JQ326208,KF268213

9

Human adenovirus 67
NC_010956
vertebrates,human
1
Adenoviridae,Mastadenovirus,Human
—
AP012302

,NC_01295

adenovirus D

9

Human adenovirus 7
NC_011202
vertebrates,human
10
Adenoviridae,Mastadenovirus,Human
—
AY601634,JF800905,

adenovirus B

AY594256,HQ659699

,KF268314,AY594255

,AY495969,KF268316

,GQ478341,JX62513

4

Human adenovirus 7
NC_011203
vertebrates,human
10
Adenoviridae,Mastadenovirus,Human
—
AY601634,JF800905,

adenovirus B

AY594256,HQ659699

,KF268314,AY594255

,AY495969,KF268316

,GQ478341,JX62513

4

Human adenovirus 7d2
NC_011202
vertebrates,human
1
Adenoviridae,Mastadenovirus,Human
—
JN860677

adenovirus B

Human adenovirus 7d2
NC_011203
vertebrates,human
1
Adenoviridae,Mastadenovirus,Human
—
JN860677

adenovirus B

Human adenovirus 7h
NC_011202
vertebrates,human
1
Adenoviridae,Mastadenovirus,Human
—
JN860676

adenovirus B

Human adenovirus 7h
NC_011203
vertebrates,human
1
Adenoviridae,Mastadenovirus,Human
—
JN860676

adenovirus B

Human adenovirus 8
NC_010956
vertebrates,human
14
Adenoviridae,Mastadenovirus,Human
—
KF268333,KF429743,

,NC_01295

adenovirus D

KF429746,AB448768,

9

AB448767,KF429750,

KF429747,KF429745,

KF429751,KF268205,

AB448769,KF429749,

KF268321,KF429753

Human adenovirus 9
NC_010956
vertebrates,human
1
Adenoviridae,Mastadenovirus,Human
—
KF268206

,NC_01295

adenovirus D

9

Human adenovirus A
NC_001460
vertebrates,human
2
Adenoviridae,Mastadenovirus,Human
—
KF268119,X73487

adenovirus A

Human adenovirus B
NC_011202
vertebrates,human
31
Adenoviridae,Mastadenovirus,Human
—
JX423384,KF633445,

adenovirus B

AY163756,JX423385,

JX491639,JX423386,

KF268311,KF268133,

JX423380,KF268120,

DQ099432,KF268125

,KF268124,KF268134

,JX423382,KF268121

,KF268117,KF268128

,KF268196,JX423383

,KF268132,KF268123

,KF268135,KF268126

,JX423388,AY598970

,EF011630,JX423387

,DQ105654,KF26813

1,JX423381

Human adenovirus B
NC_011203
vertebrates,human
31
Adenoviridae,Mastadenovirus,Human
—
JX423384,KF633445,

adenovirus B

JX423385,JX491639,

JX423386,KF268311,

KF268133,JX423380,

KF268120,DQ099432

,KF268125,DQ08646

6,KF268124,KF26813

4,JX423382,KF26812

1,KF268117,KF26812

8,KF268196,JX42338

3,KF268132,KF26812

3,KF268135,KF26812

6,JX423388,AY59897

0,EF011630,JX42338

7,DQ105654,KF2681

31,JX423381

Human adenovirus C
NC_001405
vertebrates,human
18
Adenoviridae,Mastadenovirus,Human
—
KF268199,JX173086,

adenovirus C

JX173085,KF268130,

JX173080,JX423389,

KF429754,JX173079,

JX173083,JQ1917,AY

339865,JX173078,KF

268129,JX173082,KF

268127,JX173084,JX

173077,JX173081

Human adenovirus
NC_010956
vertebrates,human
1
Adenoviridae,Mastadenovirus,Human
—
HM770721

CR/France/2008
,NC_01295

adenovirus D

9

Human adenovirus D
NC_010956
vertebrates,human
15
Adenoviridae,Mastadenovirus,Human
—
KF268197,JN162672,

,NC_01295

adenovirus D

AB605242,AB605240

9

,KF268122,AB605243

,AB605244,AB60524

5,AB605246,KF26811

8,AB605241,AJ85448

6,KF268198,AB56258

8,JN162671

Human adenovirus D
NC_010956
vertebrates,human
1
Adenoviridae,Mastadenovirus,Human
—
AP012285

B172/Dhaka City
,NC_01295

adenovirus D

9

Human adenovirus JJS-
NC_001405
vertebrates,human
1
Adenoviridae,Mastadenovirus,Human
—
HQ003817

2010

adenovirus C

Human adenovirus MZ
NC_001460
vertebrates,human
1
Adenoviridae,Mastadenovirus,Human
—
JF964962

adenovirus A

Human astrovirus
NC_001943
vertebrates,human
5
Astroviridae,Mamastrovirus,Mamastrovirus 1
—
FJ375759,JF327666,

AF141381,AB308374,

L13745

Human astrovirus 1
NC_001943
vertebrates,human
5
Astroviridae,Mamastrovirus,Mamastrovirus 1
—
L23513,AY720892,H

0398856,KF211475,J

N887820

Human astrovirus 1
NC_001943
vertebrates,human
1
Astroviridae,Mamastrovirus,Mamastrovirus 1
—
FJ755402

Beijing/128/2005/CH N

Human astrovirus 1
NC_001943
vertebrates,human
1
Astroviridae,Mamastrovirus,Mamastrovirus 1
—
FJ755403

Beijing/176/2006/CH N

Human astrovirus 1
NC_001943
vertebrates,human
1
Astroviridae,Mamastrovirus,Mamastrovirus 1
—
FJ755404

Beijing/291/2007/CH N

Human astrovirus 1
NC_001943
vertebrates,human
1
Astroviridae,Mamastrovirus,Mamastrovirus 1
—
FJ755405

Beijing/293/2007/CH N

Human astrovirus 2
NC_001943
vertebrates,human
2
Astroviridae,Mamastrovirus,Mamastrovirus 1
—
KF039911,KF039910

Human astrovirus 4
NC_001943
vertebrates,human
5
Astroviridae,Mamastrovirus,Mamastrovirus 1
—
KF039913,DQ070852

,AY720891,DQ34402

7,KF039912

Human astrovirus 5
NC_001943
vertebrates,human
2
Astroviridae,Mamastrovirus,Mamastrovirus 1
—
JQ403108,DQ028633

Human astrovirus 6
NC_001943
vertebrates,human
2
Astroviridae,Mamastrovirus,Mamastrovirus 1
—
GQ495608,HM23736

3

Human astrovirus 8
NC_001943
vertebrates,human
1
Astroviridae,Mamastrovirus,Mamastrovirus 1
—
AF260508

Human bocavirus
NC_007455
vertebrates,human
123
Parvoviridae,Bocavirus,Human bocavirus
—
JN387081,EF450736,

GQ455987,JF327789

,EU984236,JN387079

,EF450731,FJ560720

,AB481071,EF450722

,AB481080,EF450739

,AB481073,EU26297

8,AB480171,EF45072

9,JX887481,AB48108

5,AB480175,JN12895

4,DQ457413,JN1289

55,JN632515,FJ6954

72,DQ988934,JN086

998,JN387083,AB481

084,EF450727,EU98

4239,JQ411251,EF45

0717,JQ964115,EU9

84245,JN387080,EF4

50733,AB481082,EU

984235,EU984243,JN

632514,JN632511,AB

480176,EF450718,JN

632513,EF450724,AB

481077,EF450732,EF

450737,JF699044,HO

585888,DQ000495,E

F450738,AB481083,E

F450735,EF203921,A

B481076,EU984231,J

N632519,EF450734,

AB480170,EF450726,

GQ925675,JQ964116

,AB480172,JF327788

,AB480174,AB55103

2,EF450728,EF45072

0,EU984238,EF4507

21,JN387084,EF4507

30,GQ926981,JX887

480,JQ923422,JF327

786,EF203922,EU26

2979,DQ340570,KC8

23115,JN794566,JN3

87085,GQ926983,EU

984233,JN794565,FJ

496754,AB481081,E

U984241,AB481074,

EU984244,DQ988933

,JN632518,AB481075

,EF450723,GU13942

3,GQ455988,EU9842

40,JX887482,EF4507

19,EU984242,EF450

740,EU984237,EF45

0725,GU338055,FJ85

8259,AB481072,JN12

8953,GQ926982,JN6

32516,EF203920,JQ9

64114,JF327787,JN6

32517,DQ000496,JN

387082,AB480173,E

U984232,AB481078,

AB481079,JN128956,

EU984234,JN632512

Human bocavirus 2
NC_012042
vertebrates,human
15
Parvoviridae,Bocavirus,Human bocavirus 2
—
FJ973560,FJ170278,

FJ948860,GUO48664,

GU301645,EU082213

,GU048662,FJ170279

,FJ170280,EU082214

,GU301644,FJ973558

,FJ973559,GQ20073

7,GU048663

Human bocavirus 3
NC_012564
vertebrates,human
7
Parvoviridae,Bocavirus,Human bocavirus 3
—
HM132056,GQ86766

7,EU918736,GU0486

65,FJ973562,FJ9488

61,GQ867666

Human bocavirus 4
NC_012729
vertebrates,human
1
Parvoviridae,Bocavirus,Human bocavirus 4
—
FJ973561

Human bocavirus WLL-1
NC_007455
vertebrates,human
1
Parvoviridae,Bocavirus,Human bocavirus
—
DQ778300

Human bocavirus WLL-2
NC_007455
vertebrates,human
1
Parvoviridae,Bocavirus,Human bocavirus
—
EF441262

Human bocavirus WLL-3
NC_007455
vertebrates,human
1
Parvoviridae,Bocavirus,Human bocavirus
—
EF584447

Human bocavirus isolate
NC_007455
vertebrates,human
1
Parvoviridae,Bocavirus,Human bocavirus
—
FJ375127

SH1

Human bocavirus isolate
NC_007455
vertebrates,human
1
Parvoviridae,Bocavirus,Human bocavirus
—
FJ375128

SH2

Human bocavirus isolate
NC_012042
vertebrates,human
1
Parvoviridae,Bocavirus,Human bocavirus 2
—
FJ375129

SH3

Human calicivirus
NC_001959
vertebrates,human
1
Caliciviridae,Norovirus,Norwalk virus
—
AY032605

Hu/NLV/G11/MD145-

12/1987/US

Human calicivirus
NC_001959
vertebrates,human
1
Caliciviridae,Norovirus,Norwalk virus
—
AY581254

Hu/NLV/Oxford/B5522/200

3/UK

Human calicivirus
NC_001959
vertebrates,human
1
Caliciviridae,Norovirus,Norwalk virus
—
AY485642

N LV/G11/Langen 1061/2002/

DE

Human calicivirus strain
NC_001959
vertebrates,human
1
Caliciviridae,Norovirus,Norwalk virus
—
AY237415

Mc37

Human coronavirus 229E
NC_002645
vertebrates,human
6
Coronaviridae,Alphacoronavirus,Human
—
KF514430,AF304460,

coronavirus 229E

JX503060,KF514433,

JX503061,KF514432

Human coronavirus HKU1
NC_006577
vertebrates,human
36
Coronaviridae,Betacoronavirus,Human
—
KF430202,DQ415901

coronavirus HKU1

,AY597011,KF686343

,HM034837,KF68633

9,AY884001,DQ4159

09,DQ415904,KF686

342,KF686340,DQ41

5907,KF850450,DQ4

15902,KF686344,KF4

30199,DQ415903,KF

686341,DQ415908,D

0415914,DQ339101,

DQ415900,DQ41590

6,KF686338,KF68634

6,DQ415905,DQ4158

98,KF430201,DQ415

899,DQ415913,DQ41

5912,KF686345,DQ4

15896,DQ415897,DQ

415911,DQ415910

Human coronavirus NL63
NC_005831
vertebrates,human
24
Coronaviridae,Alphacoronavirus,Human
—
JQ765572,JX104161,

coronavirus N L63

JQ900257,JQ765569,

JQ765566,JQ765575,

JQ765564,JQ900256,

JQ765570,JQ900259,

JQ765563,JQ765574,

DQ445911,CS124012

,JQ765565,J X504050

,JQ765567,DQ44591

2,JQ765573,JX52417

1,JQ765568,AY56748

7,JQ765571,JQ90025

5

Human coxsackievirus A1
NC_002058
vertebrates,human
3
Picornaviridae,Enterovirus,Enterovirus C
—
JX174177,AF499635,

JX174176

Human coxsackievirus A10
NC_001612
vertebrates,human
2
Picornaviridae,Enterovirus,Enterovirus A
—
AY421767,HQ728262

Human coxsackievirus A11
NC_002058
vertebrates,human
6
Picornaviridae,Enterovirus,Enterovirus C
—
DQ995634,DQ99563

3,JF260917,JF26091

9,AF499636,JF26091

8

Human coxsackievirus A12
NC_001612
vertebrates,human
1
Picornaviridae,Enterovirus,Enterovirus A
—
AY421768

Human coxsackievirus A13
NC_002058
vertebrates,human
16
Picornaviridae,Enterovirus,Enterovirus C
—
DQ995642,DQ99564

0,DQ995637,DQ9956

36,DQ995635,DQ995

641,JF260920,AF465

511,AF499637,DQ99

5638,JF260923,JF26

0922,JF260921,DQ99

5644,DQ995639,DQ9

95643

Human coxsackievirus A14
NC_001612
vertebrates,human
1
Picornaviridae,Enterovirus,Enterovirus A
—
AY421769

Human coxsackievirus A15
NC_002058
vertebrates,human
2
Picornaviridae,Enterovirus,Enterovirus C
—
AF465512,AF499638

Human coxsackievirus A16
NC_001612
vertebrates,human
34
Picornaviridae,Enterovirus,Enterovirus A
—
JXQ68827,JQ746666,

JX481738,JF738003,

JX986740,KC695830,

JN674176,JF738004,

EU812514,JQ316639

,KC117318,AF17791

1,JX986741,KC11731

7,KC342228,JQ0341

49,EU262658,JXQ688

30,J XQ68833,JQ7466

60,AY790926,HQ423

141,JXQ68828,JXQ68

832,HQ269389,J XQ6

8829,JX507808,JX83

9965,J XQ68831,GQ2

79368,JQ746661,JX9

86742,FJ198212,GQ

279371

Human coxsackievirus A17
NC_002058
vertebrates,human
6
Picornaviridae,Enterovirus,Enterovirus C
—
JF260924,DQ995645,

JF260925,FM955278,

DQ995646,AF499639

Human coxsackievirus A18
NC_002058
vertebrates,human
3
Picornaviridae,Enterovirus,Enterovirus C
—
AF465513,AB205396,

AF499640

Human coxsackievirus A19
NC_002058
vertebrates,human
1
Picornaviridae,Enterovirus,Enterovirus C
—
AF499641

Human coxsackievirus A2
NC_001612
vertebrates,human
2
Picornaviridae,Enterovirus,Enterovirus A
—
AY421760,HQ728259

Human coxsackievirus A20
NC_002058
vertebrates,human
3
Picornaviridae,Enterovirus,Enterovirus C
—
DQ358078,AF499642

,AF465514

Human coxsackievirus A21
NC_002058
vertebrates,human
2
Picornaviridae,Enterovirus,Enterovirus C
—
AF546702,AF465515

Human coxsackievirus A21
NC_002058
vertebrates,human
1
Picornaviridae,Enterovirus,Enterovirus C
—
DQ0538

Coe

Human coxsackievirus A22
NC_002058
vertebrates,human
4
Picornaviridae,Enterovirus,Enterovirus C
—
DQ995647,JN542510

,AF499643,DQ99564

8

Human coxsackievirus A24
NC_002058
vertebrates,human
19
Picornaviridae,Enterovirus,Enterovirus C
—
EF026081,JF742578,

D90457,AB769160,J

N228097,AB769154,

DQ443001,AB769159

,AB769162,AB76916

5,AB769164,JF74257

7,AB769161,JF74257

9,JF742576,AB76916

3,AB769156,DQ4430

02,AB769152

Human coxsackievirus A3
NC_001612
vertebrates,human
1
Picornaviridae,Enterovirus,Enterovirus A
—
AY421761

Human coxsackievirus A4
NC_001612
vertebrates,human
2
Picornaviridae,Enterovirus,Enterovirus A
—
HQ728260,AY421762

Human coxsackievirus AS
NC_001612
vertebrates,human
2
Picornaviridae,Enterovirus,Enterovirus A
—
AY421763,HQ728261

Human coxsackievirus A6
NC_001612
vertebrates,human
9
Picornaviridae,Enterovirus,Enterovirus A
—
JQ946053,AB678778,

JQ946051,JQ946054,

JQ964234,JQ946055,

JQ946052,AY421764,

JQ946050

Human coxsackievirus A7
NC_001612
vertebrates,human
2
Picornaviridae,Enterovirus,Enterovirus A
—
AY421765,JQ041367

Human coxsackievirus A8
NC_001612
vertebrates,human
1
Picornaviridae,Enterovirus,Enterovirus A
—
AY421766

Human coxsackievirus A9
NC_001472
vertebrates,human
1
Picornaviridae,Enterovirus,Enterovirus B
—
DQ0627

Human coxsackievirus B1
NC_001472
vertebrates,human
7
Picornaviridae,Enterovirus,Enterovirus B
—
AY186745,JN596588,

AY186748,AY186746

,AY186747,JX976769

,EU147493

Human coxsackievirus B2
NC_001472
vertebrates,human
4
Picornaviridae,Enterovirus,Enterovirus B
—
AF081485,EF174468,

AF085363,EF174469

Human coxsackievirus B3
NC_001472
vertebrates,human
20
Picornaviridae,Enterovirus,Enterovirus B
—
U57056,AF231764,A

F231763,JX976770,A

Y752945,AY752944,

M88483,AY752946,M

16572,GU109481, M3

3854,FJQ00001,FJ35

7838,JN979570,GQ1

41875,EU144042,KC

481610,AY673831,JX

312064,AF231765

Human coxsackievirus B4
NC_001472
vertebrates,human
6
Picornaviridae,Enterovirus,Enterovirus B
—
AF311939,DQ480420

,S76772,XQ5690,JX3

08222,AF328683

Human coxsackievirus B5
NC_001472
vertebrates,human
13
Picornaviridae,Enterovirus,Enterovirus B
—
AY875692,GU376747

,HQ998851,JXQ1738

0,X67706,JXQ17382,J

X276378,JN580070,J

N695050,AF114383,J

N695051,JXQ17383,J

XQ17381

Human coxsackievirus B6
NC_001472
vertebrates,human
4
Picornaviridae,Enterovirus,Enterovirus B
—
JQ041368,AF114384,

AF105342,AF039205

Human echovirus 11
NC_001472
vertebrates,human
6
Picornaviridae,Enterovirus,Enterovirus B

EF634316,X80059,AJ

276224,AJ577594,AJ

577590,AJ577589

Human echovirus 12
NC_001472
vertebrates,human
2
Picornaviridae,Enterovirus,Enterovirus B
—
X79047,X77708

Human echovirus 13
NC_001472
vertebrates,human
5
Picornaviridae,Enterovirus,Enterovirus B
—
AB501332,AB501329

,AB501330,AB50133

1,AY302539

Human echovirus 14
NC_001472
vertebrates,human
1
Picornaviridae,Enterovirus,Enterovirus B
—
AY302540

Human echovirus 15
NC_001472
vertebrates,human
1
Picornaviridae,Enterovirus,Enterovirus B
—
AY302541

Human echovirus 16
NC_001472
vertebrates,human
1
Picornaviridae,Enterovirus,Enterovirus B
—
AY302542

Human echovirus 17
NC_001472
vertebrates,human
1
Picornaviridae,Enterovirus,Enterovirus B
—
AY302543

Human echovirus 18
NC_001472
vertebrates,human
2
Picornaviridae,Enterovirus,Enterovirus B
—
AF317694,HM777023

Human echovirus 19
NC_001472
vertebrates,human
1
Picornaviridae,Enterovirus,Enterovirus B
—
AY302544

Human echovirus 2
NC_001472
vertebrates,human
2
Picornaviridae,Enterovirus,Enterovirus B
—
AY302545,AF465518

Human echovirus 20
NC_001472
vertebrates,human
1
Picornaviridae,Enterovirus,Enterovirus B
—
AY302546

Human echovirus 21
NC_001472
vertebrates,human
1
Picornaviridae,Enterovirus,Enterovirus B
—
AY302547

Human echovirus 24
NC_001472
vertebrates,human
1
Picornaviridae,Enterovirus,Enterovirus B
—
AY302548

Human echovirus 25
NC_001472
vertebrates,human
2
Picornaviridae,Enterovirus,Enterovirus B
—
AY302549,HM031191

Human echovirus 26
NC_001472
vertebrates,human
1
Picornaviridae,Enterovirus,Enterovirus B
—
AY302550

Human echovirus 27
NC_001472
vertebrates,human
1
Picornaviridae,Enterovirus,Enterovirus B
—
AY302551

Human echovirus 29
NC_001472
vertebrates,human
1
Picornaviridae,Enterovirus,Enterovirus B
—
AY302552

Human echovirus 3
NC_001472
vertebrates,human
13
Picornaviridae,Enterovirus,Enterovirus B
—
AB647324,AB647318

,AB647326,AB64732

0,AB647325,AB6473

19,AY302553,AJ8499

42,AB647322,AB647

317,AB647321,AB64

7323,AB647316

Human echovirus 30
NC_001472
vertebrates,human
5
Picornaviridae,Enterovirus,Enterovirus B
—
JN704615,DQ246620

,AF311938,DQ53420

5,AF162711

Human echovirus 31
NC_001472
vertebrates,human
1
Picornaviridae,Enterovirus,Enterovirus B
—
AY302554

Human echovirus 32
NC_001472
vertebrates,human
1
Picornaviridae,Enterovirus,Enterovirus B
—
AY302555

Human echovirus 33
NC_001472
vertebrates,human
1
Picornaviridae,Enterovirus,Enterovirus B
—
AY302556

Human echovirus 4
NC_001472
vertebrates,human
2
Picornaviridae,Enterovirus,Enterovirus B
—
AY302557,FJ172447

Human echovirus 5
NC_001472
vertebrates,human
2
Picornaviridae,Enterovirus,Enterovirus B
—
HM775882,AF083069

Human echovirus 6
NC_001472
vertebrates,human
5
Picornaviridae,Enterovirus,Enterovirus B
—
U16283,AY302558,A

F465517,HM185055,

JQ729993

Human echovirus 7
NC_001472
vertebrates,human
4
Picornaviridae,Enterovirus,Enterovirus B
—
AY036578,AF465516,

AY302559,AY036579

Human echovirus 9
NC_001472
vertebrates,human
2
Picornaviridae,Enterovirus,Enterovirus B
—
AF524867,AF524866

Human endogenous
NC_022518
vertebrates,human
1
Retroviridae,Human endogenous retrovirus K
—
AY037928

retrovirus K113

Human endogenous
NC_022518
vertebrates,human
1
Retroviridae,Human endogenous retrovirus K
—
AY037929

retrovirus K115

Human enteric coronavirus
NC_012950
vertebrates,human
1
Coronaviridae,Human enteric coronavirus
—
FJ938067

strain 4408

strain 4408

Human enterovirus 100
NC_001472
vertebrates,human
1
Picornaviridae,Enterovirus,Enterovirus B
—
DQ902713

Human enterovirus 101
NC_001472
vertebrates,human
1
Picornaviridae,Enterovirus,Enterovirus B
—
AY843308

Human enterovirus 102
NC_002058
vertebrates,human
1
Picornaviridae,Enterovirus,Enterovirus C
—
EF555645

Human enterovirus 104
NC_002058
vertebrates,human
1
Picornaviridae,Enterovirus,Enterovirus C
—
AB686524

Human enterovirus 107
NC_001472
vertebrates,human
1
Picornaviridae,Enterovirus,Enterovirus B
—
AB426609

Human enterovirus 68
NC_001430
vertebrates,human
8
Picornaviridae,Enterovirus,Enterovirus D
—
JX101846,EF107098,

JXQ70222,AB601883,

AB601884,AY426531

,AB601885,AB60188

2

Human enterovirus 69
NC_001472
vertebrates,human
1
Picornaviridae,Enterovirus,Enterovirus B
—
AY302560

Human enterovirus 70
NC_001430
vertebrates,human
1
Picornaviridae,Enterovirus,Enterovirus D
—
DQ201177

Human enterovirus 71
NC_001612
vertebrates,human
281
Picornaviridae,Enterovirus,Enterovirus A
—
DQ341365,JX244183

,AB575917,HQ88218

2,HM053669,AF1363

79,GU396280,JX678

880,HM245928,GQ23

1931,HQ647177,GU3

66191,JQ074188,AB4

69182,EU414333,GQ

231928,JX678885,JF

820315,JQ639384,JX

111890,AF176044,D

0341362,HQ891928,

AB550336,HQ647171

,HM807310,EU86450

7,JQ074190,EU4143

35,FJ194965,JN9646

86,JX678875,FJ6064

48,JX678886,EF3735

75,HQ694986,HM002

486,GU198368,JX24

4182,GQ231925,JQ2

80307,HM002489,FJ

828519,JQ708209,G

0279369,FJ607338,J

X986738,AB575935,J

N992285,JX111891,

GQ231934,HQ32585

2,AB550339,HQ8919

23,JN020147,HQ423

142,JQ319054,HQ64

7170,JF738002,JN99

2284,GU459070,JQ7

36684,JX678879,HQ

694982,FJ607334,JX

678883,HQ647176,H

0647169,AB575936,

AB575913,GU198367

,JX111893,EU376004

,FJ606449,DQ381846

,AM396586,JF738001

,GU198369,EU70381

4,AM396587,JN2560

64,JQ708210,AF3044

57,JX244186,HQ891

925,HQ828086,GU19

8370,AB575928,EU3

76005,JXQ25561,JX1

11892,JX678874,FJ6

06450,HM053671,HQ

647174,JQ950555,AY

465356,AB550333,H

0647179,JN544419,

AB575937,EU414334

,HQ647175,HQ64716

8,AB575914,JX67888

2,HQ891927,JX9867

39,GQ231936,FJ360

546,HM003207,JN99

2283,GQ994990,U22

521,AB575918,DQ34

1364,JF738000,HQ18

8292,AB575915,AM3

96588,EU812515,FJ6

07336,GQ231932,JQ

639383,HQ647172,E

F063152,GQ231927,

JXQ17384,AB550335,

JN256060,AB469183,

AB550341,U22522,H

0891926,HM002487,

HQ647178,JX678877

,GQ231942,AB57591

1,FJ158601,AF30445

8,DQ341363,HM0024

84,HM245927,AB550

340,DQ060149,DQ34

1358,FJ713137,GQ9

94991,JN256059,HQ

426649,AB550337,A

B575916,AF119796,A

B575941,JN992282,H

0129932,HQ825317,

JX111888,DQ341367

,FJ606447,HQ694983

,JX678884,GQ89283

0,JN256061,FJ17215

9,AB575912,HM0024

85,AB575939,JQ6812

18,FJ158600,FJ6073

35,AB575927,JF8300

07,JN001860,DQ341

357,AM396584,AF30

2996,AB575948,GQ2

31930,JF820314,AM3

96585,FJ360544,AJ5

86873,JX678881,HQ

407557,DQ341368,J

N256063,HQ891929,

JX244187,JF894382,

HQ891924,JQ742001

,DQ341359,GQ99499

2,AF304459,JQ31663

8,AB575942,HQ1893

92,DQ133459,GU198

371,JN052925,JQ074

189,JN256062,JQ806

378,HM053670,GQ23

1929,AB204853,JF82

0316,JX678876,JQ07

4187,EU703812,FJ60

7337,HM002488,EF3

73576,AB482183,HQ

694985,GU459071,J

XQ25559,JF894381,H

0998852,GQ231926,

FJ194964,AF119795,

GQ994989,DQ13345

8,FJ360545,HQ71202

0,JQ742002,GQ2793

70,AB550334,GU196

833,JF820313,DQ341

360,AB550338,JN835

312,JF894383,JX678

878,HQ611148,GQ23

1941,JX986737,GQ2

31933,HQ647180,DQ

341355,EU364841,K

C109780,AB575938,

DQ452074,GQ23193

9,GU434678,DQ3413

61,HQ423143,GQ231

940,GQ231935,HQ69

4984,JF913464,EU70

3813,DQ341366,JX2

44184,AB204852,FJ4

61781,JX244185,GQ

994988,HQ647173,E

U414331,GQ231938,

AB550332,JN544418,

HQ647167,JQ804832

,AB575923,GQ23194

3,GQ231937,JX1118

89,FJ439769,DQ3413

56,JF820312,DQ3413

54,KC414134,EU131

776,JF799986

Human enterovirus 71
NC_001612
vertebrates,human
1
Picornaviridae, Enterovirus, Enterovirus A
—
HQ400942

HZ08/Hangzhou/2008

Human enterovirus 74
NC_001472
vertebrates,human
2
Picornaviridae, Enterovirus, Enterovirus B
—
JQ397329,AY556057

Human enterovirus 75
NC_001472
vertebrates,human
1
Picornaviridae,Enterovirus,Enterovirus B
—
AY556070

Human enterovirus 76
NC_001612
vertebrates,human
2
Picornaviridae, Enterovirus, Enterovirus A
—
JF905564,AY697458

Human enterovirus 77
NC_001472
vertebrates,human
1
Picornaviridae,Enterovirus,Enterovirus B
—
AY843302

Human enterovirus 79
NC_001472
vertebrates,human
2
Picornaviridae,Enterovirus,Enterovirus B
—
AY843297,AB426610

Human enterovirus 80
NC_001472
vertebrates,human
2
Picornaviridae, Enterovirus, Enterovirus B
—
JX644073,AY843298

Human enterovirus 81
NC_001472
vertebrates,human
1
Picornaviridae,Enterovirus,Enterovirus B
—
AY843299

Human enterovirus 82
NC_001472
vertebrates,human
1
Picornaviridae,Enterovirus,Enterovirus B
—
AY843300

Human enterovirus 83
NC_001472
vertebrates,human
1
Picornaviridae,Enterovirus,Enterovirus B
—
AY843301

Human enterovirus 84
NC_001472
vertebrates,human
1
Picornaviridae,Enterovirus,Enterovirus B
—
DQ902712

Human enterovirus 85
NC_001472
vertebrates,human
6
Picornaviridae, Enterovirus, Enterovirus B
—
AY843303,JX898905,

JX898908,JX898907,

JX898906,JX898909

Human enterovirus 86
NC_001472
vertebrates,human
1
Picornaviridae,Enterovirus,Enterovirus B
—
AY843304

Human enterovirus 87
NC_001472
vertebrates,human
1
Picornaviridae,Enterovirus,Enterovirus B
—
AY843305

Human enterovirus 88
NC_001472
vertebrates,human
1
Picornaviridae,Enterovirus,Enterovirus B
—
AY843306

Human enterovirus 89
NC_001612
vertebrates,human
1
Picornaviridae,Enterovirus,Enterovirus A
—
AY697459

Human enterovirus 90
NC_001612
vertebrates,human
6
Picornaviridae, Enterovirus, Enterovirus A
—
JX390655,AB192877,

JX390654,AY697460,

JX390656,AY773285

Human enterovirus 91
NC_001612
vertebrates,human
1
Picornaviridae,Enterovirus,Enterovirus A
—
AY697461

Human enterovirus 92
NC_001612
vertebrates,human
1
Picornaviridae,Enterovirus,Enterovirus A
—
EF667344

Human enterovirus 94
NC_001430
vertebrates,human
2
Picornaviridae, Enterovirus, Enterovirus D
—
DQ916376,EF107097

Human enterovirus 96
NC_002058
vertebrates,human
1
Picornaviridae,Enterovirus,Enterovirus C
—
EF015886

Human enterovirus 97
NC_001472
vertebrates,human
2
Picornaviridae,Enterovirus,Enterovirus B
—
AY843307,AB426611

Human enterovirus 98
NC_001472
vertebrates,human
1
Picornaviridae,Enterovirus,Enterovirus B
—
AB426608

Human enterovirus 99
NC_002058
vertebrates,human
2
Picornaviridae,Enterovirus,Enterovirus C
—
EF555644,JF260926

Human enterovirus A
NC_001612
vertebrates,human
9
Picornaviridae, Enterovirus, Enterovirus A
—
HQ456312,HQ45630

7,HQ456313,HQ4563

08,HQ456306,HQ456

309,HQ456311,HQ45

6310,HQ456305

Human enterovirus B
NC_001472
vertebrates,human
6
Picornaviridae, Enterovirus, Enterovirus B
—
AY896765,EF371880,

AY896762,AJ493062,

AY896763,HM185056

Human enterovirus C
NC_002058
vertebrates,human
22
Picornaviridae,Enterovirus,Enterovirus C
—
HQ738302,HQ73830

1,HQ738290,HQ7382

86,HQ738291,HQ738

298,JX393301,HQ73

8294,HQ738297,V01

149,HQ738300,HQ73

8296,HQ738299,HQ7

38293,HQ738288,JX

393302,HQ738289,H

0738292,HQ738287,

HQ738303,AB205395

,H Q738295

Human enterovirus C104
NC_002058
vertebrates,human
7
Picornaviridae,Enterovirus,Enterovirus C
—
JX982256,JX982254,

JX982253,JX982255,

JX982259,JX982258,

JX982257

Human enterovirus C105
NC_002058
vertebrates,human
1
Picornaviridae,Enterovirus,Enterovirus C
—
JX514943

Human enterovirus C109
NC_002058
vertebrates,human
1
Picornaviridae,Enterovirus,Enterovirus C
—
GQ865517

Human enterovirus C116
NC_002058
vertebrates,human
1
Picornaviridae,Enterovirus,Enterovirus C
—
JX514942

Human enterovirus C117
NC_002058
vertebrates,human
1
Picornaviridae,Enterovirus,Enterovirus C
—
JX262382

Human enterovirus C118
NC_002058
vertebrates,human
3
Picornaviridae,Enterovirus,Enterovirus C
—
JX961709,JX678288,

JX961708

Human enterovirus C96
NC_002058
vertebrates,human
5
Picornaviridae,Enterovirus,Enterovirus C
—
HQ415759,FJ751915,

FJ751914,KF495604,

HQ415758

Human enterovirus C99
NC_002058
vertebrates,human
7
Picornaviridae,Enterovirus,Enterovirus C
—
KF129411,EF015012,

KF129412,EF015011,

EF015010,EF015009,

EF015008

Human enterovirus D
NC_001430
vertebrates,human
1
Picornaviridae,Enterovirus,Enterovirus D
—
DQ0820

Human enterovirus
NC_002058
vertebrates,human
1
Picornaviridae,Enterovirus,Enterovirus C
—
AY876913

Hangzhou13-02

Human enterovirus
NC_002058
vertebrates,human
1
Picornaviridae,Enterovirus,Enterovirus C
—
AY876912

Ningbo3-02

Human group 1
NC_005831
vertebrates,human
1
Coronaviridae,Alphacoronavirus,Human
—
AY518894

coronavirus associated with

coronavirus NL63

pneumonia

Human herpesvirus 1
NC_001806
vertebrates,human
8
Herpesviridae,Simplexvirus,Human
—
KF498959,JQ673480,

herpesvirus 1

GU734772,X14112,F

J593289,GU734771,J

N555585,JQ780693

Human herpesvirus 2
NC_001798
vertebrates,human
2
Herpesviridae,Simplexvirus,Human
—
Z86099,KF781518

herpesvirus 2

Human herpesvirus 3
NC_001348
vertebrates,human
47
Herpesviridae,Varicellovirus,Human
—
DQ479962,JN704700

herpesvirus 3

,DQ479956,DQ45205

0,JN704703,JN70470

5,JN704708,KC84729

0,JN704698,DQ0083

54,AY548171,JN7046

91,JN704695,AB0979

33,DQ674250,DQ479

961,JN704709,JN704

694,DQ479959,JN70

4710,JN704690,DQ4

79958,DQ479957,JN

704706,JN704704,D

0008355,JN704696,

KC112914,DQ479954

,DQ479953,JN70469

7,JN704701,DQ4799

55,EU154348,DQ479

960,JF306641,DQ479

963,JN704699,AB097

932,DQ457052,JN70

4707,JN704692,AY54

8170,JN704702,XQ43

70,AJ871403,JN7046

93

Human herpesvirus 4
NC_007605
vertebrates,human
5
Herpesviridae,Lymphocryptovirus,Human
—
AJ507799,KC207813,

NC_00933

herpesvirus 4

KC207814,AY961628

4

,KF373730

Human herpesvirus 5
NC_006273
vertebrates,human
46
Herpesviridae,Cytomegalovirus,Human
—
JX512200,GU179290

herpesvirus 5

,GU179291,GQ22197

4,FJ527563,GU93774

2,GQ396662,KC5193

19,GU179001,AC146

999,JX512204,GQ22

1973,KF297339,JX51

2205,AC146906,JX51

2199,HQ380895,GQ2

21975,GU179288,JX

512203,AY315197,JX

512202,KC519321,FJ

616285,JX512197,G

0121041,EF999921,

AC146851,JX512208,

KC519323,JX512201,

AC146904,AY446894

,JX512206,JX512207,

GQ466044,AC14690

5,KC519320,GU1792

89,GQ396663,GU980

198,X17403,KC51932

2,JX512198,AC14690

7,KF021605

Human herpesvirus 7
NC_001716
vertebrates,human
2
Herpesviridae,Roseolovirus,Human
—
AF037218,U43400

herpesvirus 7

Human herpesvirus 8
NC_009333
vertebrates,human
3
Herpesviridae,Rhadinovirus,Human
—
AF148805,HQ404500

herpesvirus 8

,JQ619843

Human herpesvirus 8 type
NC_009333
vertebrates,human
1
Herpesviridae,Rhadinovirus,Human
—
GQ994935

P

herpesvirus 8

Human immunodeficiency
NC_001802
vertebrates,human
1815
Retroviridae,Lentivirus,Human
—
K02013,DQ676887,E

virus 1

immunodeficiency virus 1

U697905,GQ372988,

AF408631,AF042103,

EU110097,DQ020274

,AB253705,DQ39638

0,DQ314731,AY7795

51,KC899015,FJ6234

91,FJ670519,GU7337

15,AF069140,AB2536

90,AB253679,KC156

213,AB253676,EF637

057,U63632,FJ62349

4,FJ771010,DQ16410

5,GQ999983,AF4430

76,AB253686,AB231

898,AF119820,KC89

8978,AY819715,FJ49

6163,JX574663,AF25

6211,AF107771,KC1

56129,U69585,EF495

062,AB231896,GQ99

9973,DQ487190,AB0

98331,EU110085,AF

490974,AY771591,E

U293450,EU735535,

AY586542,AB565503

,AB287003,AB25370

7,AY463229,AF25995

4,AB286863,EF36312

5,AY352655,DQ3512

22,AB565500,DQ011

177,AY331293,FJ495

822,AY536235,AY30

8762,AJ251056,FJ49

5826,AY586544,FJ49

6085,U69589,AB2868

57,FJ623482,EF1783

66,AF197338,FJ4960

82,AY463235,AY835

758,EU616643,AB25

3693,AY878055,AF11

0966,JF804806,KC89

8993,AB287370,AY9

00572,DQ164121,EU

697906,EU735536,A

B287363,DQ853445,

FJ185228,KC898988,

AY455785,AF075701,

KC156218,HM02646

0,EU110086,FJ49594

1,AF005494,AY12589

4,DQ886033,KC8989

76,AB485656,DQ093

591,JX503074,GU36

2013,FJ670525,AF06

7157,DQ207943,U69

586,AB254154,FJ185

238,AY560108,AY90

1971,KC522034,AF1

10961,AY835761,DQ

358799,AB565502,E

U786675,AY771589,

AF190127,AB253640,

DQ445635,EU735539

,AJ291718,DQ36997

7,EU743964,GU7337

13,AF067155,AY7811

27,DQ396386,AF443

077,FJ496189,FJ623

485,FJ496156,KC503

855,DQ853451,AB25

3421,FJ670516,DQ85

4716,AF450098,EU1

10092,EU786680,DQ

351217,EF514699,AF

067159,DQ351231,A

Y771593,AY878064,

EU697904,AY835763

,GU647197,GQ36565

2,AB565504,U51190,

AY586546,FJ623493,

U39362,EU786673,D

0295195,AY463236,

AJ866555,AY835751,

AB286956,AY586545

,FJ496074,EU697908

,A07867,DQ886036,D

0912822,AF119819,

AF423756,DQ358808

,DQ396384,AB25370

6,AY945709,DQ3963

69,AY314046,FJ8646

79,GQ999975,AF289

548,FJ853622,DQ990

880,AY970950,AB73

1663,FJ496076,DQ39

6382,AB428555,AB7

31665,AY586548,AF4

08630,JQ341411,KC

156215,EU110087,K0

2007,AY455779,AF44

3074,AJ276595,FJ67

0531,DQ164116,FJ18

5245,DQ007903,AF0

69671,AY968312,EU

446022,AY455782,FJ

195091,AY332236,A

B253712,AY771588,

AB253644,DQ164110

,FJ460501,DQ164112

,AY779558,AB25364

9,DQ054367,AY9005

75,AY772692,JX5030

75,AY901980,AB231

895,FJ623479,GU177

863,KC899011,FJ496

200,AY463233,HM02

6459,JQ316136,AY00

8714,FJ185254,GU73

3714,DQ358802,AF4

84515,D10112,DQ88

6034,DQ351221,AF4

43099,AB253681,AY

093605,AY773338,FJ

496214,DQ093585,A

F107770,DQ085872,

KC899007,DQ396400

,AB098332,DQ85344

1,FJ496194,AB28737

7,AB253714,DQ8534

38,AF443092,FJ6234

77,FJ185239,AB2873

67,XQ1762,AF110974

,DQ351235,DQ32223

9,DQ085875,AF1109

75,AM000054,AP005

206,FJ496181,AY835

773,GU647196,KC15

6126,DQ853465,HM4

69972,JX503080,DQ

396364,AF197341,JN

860764,AY818644,FJ

195088,AF443107,FJ

670521,DQ295193,FJ

496151,AB480301,D

0853455,AB746345,

AB097868,FJ496183,

AY772535,DQ056418

,AY835770,EU00050

7,DQ676871,D86068,

AB485639,AF411967,

JQ316130,AB485657,

AY314053,AY901976

,KC898984,JX503076

,AB286856,EF363124

,AF075702,AY423384

,AF290028,FJ496191

,AY779560,EU03191

3,DQ369997,AF2895

50,AY773340,AF0421

02,AF061642,AF0043

94,EF545108,EU786

671,AB254147,FJ496

193,AY322190,AY87

8067,FJ185233,FJ49

6147,FJ460499,DQ35

8801,AJ866554,AF11

0959,FN392874,U211

35,AB253429,AB565

498,EU000511,KC89

8985,GQ999974,AB0

97867,AY835778,FJ1

85255,FJ495823,AF4

60972,AB253653,U43

141,FJ185249,JF804

808,AF192135,AF110

971,FJ496213,AB253

657,M38429,AB4800

48,AB485637,DQ056

407,FJ213782,AB485

635,GU237072,DQ85

3450,KC898979,M22

639,DQ295194,FJ495

938,AB253674,DQ44

5632,EU000510,DQO

56410,AY585264,DQ

854715,FJ496166,AB

480695,DQ886032,A

Y314057,DQ676882,

AY900571,FJ496202,

AY008717,AB547464

,AY037282,FJ185244

,DQ164120,AJ24548

1,KC898991,AY1698

14,U46016,AF184155

,KF766537,GU59514

9,AY838567,HM4699

74,AY331296,DQ369

979,GQ175881,GQ99

9981,EU110094,FJ49

6199,U88826,AY4632

27,AY500393,FJ4959

42,DQ164117,FJ6471

45,AB253721,DQ445

634,AY772691,KC89

8977,AF110960,AJ25

1057,DQ351234,AY9

00574,EU000516,EU

293444,AB253719,A

Y771590,AY773339,

AF286365,DQ358812

,EF029067,DQ85471

4,FJ495824,DQ35880

9,FJ496212,AB25369

2,DQ351232,AB2536

62,FJ496003,EU6166

39L31963,AY169807

,AF067154,U51188,A

Y585265,AF443083,A

F286236,FJ185259,G

0999980,DQ853457,

FJ670515,DQ396396,

AB253684,AY322193

,AY586543,AY83576

5,U71182,KC898982,

DQ369998,DQ36998

3,DQ358800,JX5030

82,FJ623484,AY9019

74,AJ866553,AB2870

04,AJ508597,AB4800

47,FJ496073,AB4856

53,DQ369996,AF484

480,AY838565,AP00

5207,AB253697,DQO

11178,AY463217,AB

253659,HM026455,A

Y772700,AJ288981,A

F450097,KC156115,

DQ369978,AB428557

,AY331297,JQ316127

,DQ396371,FJ623492

,A07116,EU293445,K

C156220,AF082394,

AF443103,AB253685,

EU293448,DQ676874

,AB253638,AY87805

9,AY049711,AB6049

47,FJ496206,HM026

457,FJ670523,FJ670

522,AB547463,AF443

105,AB070353,AY31

4052,FJ496075,AY77

2696,KC898996,DQ8

53456,AB641836,AY

237167,FJ496148,KC

898992,AY623602,A

B221125,AB253708,

AY682547,AF423760,

EF178405,AY835771,

AF484485,AB428560,

AF286223,FJ195089,

AF516184,EF637055,

AY779550,AB485660

,AF538303,FJ185232

,DQ164118,AB48564

4,AB070352,KC5038

53,DQ093607,AF042

104,DQ314732,DQ05

6414,FJ185235,DQ82

3367,EU786674,AB7

31669,FJ195087,FJ1

85260,GQ372986,AB

287372,AB480697,D

0445633,AB287379,

AY445524,FJ185234,

AY169810,DQ396370

,FJ185230,DQ011180

,AF110969,FJ213780

,AB253673,AY83575

6,AF443082,DQ0936

01,AB485659,GQ845

125,AF443108,AY314

055,AF538302,EF178

323,AB286850,AY83

5779,DQ351237,DQ3

66662,DQ093589,FJ4

96006,AB480045,AB

253694,AB253431,D

0351219,EF514713,

KC156127,GQ99999

0,AF179368,GQ8451

26,DQ093590,EU735

540,DQ207942,AY42

3381,DQ853439,AB0

98333,M17451,FJ495

820,DQ853460,AB25

3639,JQ316126,AY46

3222,FJ496198,AF45

0096,EU000509,AY4

63224,FJ496081,AY8

78068,KC156118,EU

000512,EF514711,AF

443097,AF286237,AB

253672,U51189,DQ3

66665,AY536233,EF6

37056,FJ496164,DQ8

53448,EF637048,FJ4

96178,FJ670518,AY8

35757,DQ366659,AB

485633,AY167123,FJ

496171,AF110970,EF

514704,AB286859,D

0396391,DQ351236,

AF408628,EF637050,

AY322189,AY169813

,EU884501,M62320,A

Y173955,AB485655,

AB220947,KF766538,

AY423383,AF004885,

AY046058,AJ320484,

AF443115,AY227107,

EU786670,DQ396393

,AB253656,L20571,A

F193253,JQ316132,A

Y352657,JQ429433,A

JQ06022,DQ853436,F

J771006,EF363127,A

Y901966,DQ093592,

FJ496195,AB746343,

AF110978,DQ164104

,AY314056,AB42855

4,EF637054,AB25368

8,AB254153,XQ4415,

AY835774,AB253720

,GU595154,AB28736

8,AJ404325,AB42855

3,EU000514,FJ49615

2,AY751407,FJ67053

0,DQ085876,DQ6768

77,FJ711703,AY0497

09,JQ316134,AF4086

27,FJ496197,U37270

,AB253677,AY32219

1,FJ670524,FJ49618

5,DQ912823,AY4632

21,AF460974,AY7726

99,AB646691,DQ396

378,AB253647,AB25

3682,EF514710,AB48

5662,DQ396385,DQ8

45388,Z11530,AB220

946,AB253703,FJ195

090,AY878057,AF193

275,AY772695,AY83

5754,EF192592,EF51

4712,GU595158,AB2

53652,AF110963,KC

156119,EF368372,FJ

623495,EU616649,A

F443084,AB253699,A

F385935,KC898986,

AB286854,AB254156

,FJ623480,DQ396388

,AB254155,AB48564

5,DQ358811,AY9019

65,AB480694,AY173

957,DQ351238,AF28

6238,DQ351223,AB2

53716,AY455784,EU

448295,AB287371,AF

443112,AB480698,FJ

213781,AY162225,A

Y352654,AB485663,F

J771007,AB253423,A

B253671,AB253635,

AY532635,AY835769

,AB485651,AY87806

5,AB254149,DQ3512

30,AB253687,AY536

237,EF637053,JN860

767,EF091932,AB604

951,DQ358805,AY90

1975,AJ271445,U346

03,K03454,U26546,A

B746342,FJ496160,J

X503073,KC899009,

AF086817,AF286235,

FJ495819,AF443086,

K03455,AY835767,E

U786672,AB220944,

FJ623476,GQ999985

,EF514708,AB286849

,AY586540,DQ05640

4,DQ396398,AY4557

81,M17449,AB48564

1,AB485634,KC1561

21,AY314049,AF4431

11,KC522033,AB286

860,KC156120,DQ09

3597,DQ164122,AY5

35659,AY331289,AY

560109,DQ230841,K

C935957,DQ445637,

AF443089,EF192591,

AB731667,EU110088

DQ093596,EU78667

8,AB604949,HM4699

83,EU616642,DQ093

600,AY585268,EU61

6641,AY463223,AB2

54143,DQ853454,AY

838568,FJ623488,DQ

853447,AY322187,D

0011175,AY818643,

AF164485,HM215250

,DQ056411,AY33128

2,AB731666,AB2536

37,AF224507,DQ011

165,AF443088,KC89

8975,AB253670,AB2

86862,AB286861,AF4

43079,FN392876,DQ

886031,KC852172,A

Y703910,DQ093606,

FJ771008,DQ853458,

AF443075,DQ487191

,AB287364,AF490973

,AY779559,HM02645

6,HM469981,GQ9999

78,AY169808,AY423

385,AY901979,AY35

2656,HM776939,AY8

78060,AY772693,AB

485642,AY901967,A

B731670,AY878054,

DQ445636,KC898983

,AF423755,AB428556

,AB480692,AY53111

6,AY781126,AF44308

7,GQ372989,AB2211

26,AF110976,AY3140

61,AY049710,AB097

,869,DQ396394,AY31

4054,GU595153,FJ49

5937,FJ496174,AB28

6853,JQ316128,AB56

5501,AB253709,AB0

97866,AY835759,GQ

999991,DQ295192,D

0093602,AF377958,

AB485654,AF443114,

AJ866558,AY162224,

DQ085867,AB480044

,AB485647,DQ16412

9,AF321523,AY16222

3,AB746344,GQ1758

83,AY455780,FJ1852

58,AB289589,M2732

3,HM026458,AF4845

11,AF286227,AB2536

89,HM776938,AF290

029,DQ383750,FJ496

170,KC156130,U867

80,AY314063,AB254

142,FJ185246,AF110

980,FJ496157,U8882

3,JF804810,AB25364

8,M15654,DQ853443,

FN392877,EF036527,

,AB253643,FJ460500,

GQ999979,GQ99998

6,FJ185240,KC85217

4,AF361873,AB25366

9,AF411964,AB42855

8,M38431,AB485648,

AB253723,DQ234790

,DQ164113,FJ185236

,AB485632,AB09787

1,AY173951,KC5038

52,AF005495,EF0365

31,DQ396399,FJ4962

07,EF420986,AY3140

62,EF175209,JQ3161

31,AF443085,FJ8536

20,EF036532,AF4430

90,DQ396372,AM000

055,AB052867,AB48

0300,AB253651,DQ1

64114,AY835762,AB

289588,AB253717,AJ

276596,AF256205,E

U697909,AB253658,

AY818641,EU031915

,AF256206,DQ16410

9,EU000513,AB4856

66,DQ859180,AB254

,141 ,GQ372987,AF40

8629,AY588970,DQ1

64127,AY158534,FJ4

95943,DQ837381,DQ

358803,FJ623481,EU

293446, AB231897, AF

110977,DQ011179,A

B220948,FJ496001,F

J185229,AF407418,A

F413987,AY835780,E

U786681,AF385934,

KC156221,AY838566

,AB428551,AY87806

6,FJ185253,AB48566

7,DQ396389,GU1115

55, AY314059,DQ093

593,AY901977,AF457

058,AY237165,DQ09

3587, AJ 508596,FJ18

5250,AF256207,AJ86

6557,FJ670527,AF04

9495, DQ011166,K02

083,FJ496188,AY703

908,AY835749,KC89

9014,KC156217,DQ3

69993, AF110964,AY7

51406,FJ496000,KC8

,99012,DQ369995,DQ

354118,DQ853452,D

Q396387,FJ496149,A

Y008718,EU786677,

DQ396377,AY331283

,AB023804,AF110981

,EF514707,DQ35123

3,KC156216,AY5865

47,U34604,AB287369

,U23487,AY779557,F

J496175,AB253428,E

F078278,AB049811,F

J623475,DQ676878,F

J670517,DQ886037,

AB253691,L39106,A

B253680,EU000515,

AB485661,DQ978981

,EU547186,DQ16410

6,DQ853449,DQ6768

80,AF443080,EF4209

87,AY463230,AB253

636,KC898987,AF07

7336,AB604950,EF63

7046,AF082395,AY90

1978,AF003887,KC1

56123,AY586549,AY

878063,AY463228,EF

,029069,AB097865,A

Y901969,JX503072,A

F286229,AY331292,

DQ351228,GQ99998

2,DQ164111,DQ0858

70,KC899013,DQ011

173,AJ271370,AY901

968,FJ853621,KC156

125,FJ496159,AY173

954,AY835777,DQ85

3440,AF443110,AB25

3665,AY169803,AY8

35750,FJ496187,DQ3

51218,DQ011171,HM

469982,KC156124,E

F637051,EU110095,

EF368370,AF110962,

GU595151,EU786676

,AY173953,AY83577

2,AF042101,DQ4456

31,AB254144,EU616

645,DQ093594,AY87

8070,GU595150,AF0

42106,JN571034,FJ4

96184,AY082968,GU

595155,HM215252,G

0999976,AY314045,

,AF290030,AY423386,

AB289590,AF423758,

JN188292,AY463219,

DQ351224,AB485638

,AJ508595,AY118166

,AF289549,JN860769

,AB564746,EF363126

,DQ396373,KC15611

6,AF067156,KF76654

1,FJ185243,AF06164

0,AF067158,AB25415

2,JX574661,HM4699

75,AY331288,EF0365

29,AB286851,EF5146

98,AB253425,KC492

738,AF443104,KF766

542,AB286864,FJ623

490,DQ853453,EU00

0508,DQ011172,KC1

56211,DQ369990,FJ1

85237,AY169816,DQ

396392,AY779556,A

B480299,AY805330,

HM469980,AY901973

,KC156212,AF28623

1,AY779553,AF41196

5,DQ351216,EU2934

,47,DQ007902,DQ007

901,AY779564,FJ185

257,AB253424,U6959

0,AB428559,DQ1641

15,AB485650,EF0782

79,AB485643,AY779

561,AF049494,AF407

419,DQ295196,AF07

5703,AY772694,AY0

74891,AB253663,AF0

76475,U12055,GQ99

9988,EU110089,DQ3

96365,AJ237565,EFS

14700,AJ239083,AF2

86226,AY560110,GQ

372990,AF286232,L0

2317,AB253426,DQ3

51227,FJ496196,DQ9

79024,AB731664,AY

463226,EF036533,D

0853464,DQ011169,

AF414006,AB485664,

FJ670526,AB253713,

AY352275,FJ185248,

EF363122,AB254148,

FJ496158,DQ396366,

JN860768,AY901972,

,FJ496208,M93259,D

0369991,GU595157,

AB253642,AY158533

,EF029066,AB253655

,DQ487189,AY77269

8,EF514702,AY53623

4,KF766540,HM2152

49,DQ369981,FJ1950

86,AY771592,FJ4960

72,DQ369986,FJ4961

53,AF286233,EU693

240,FJ496007,FJ496

079,JN860766,FJ771

009,FJ496080,JX503

081,D86069,AF11097

3,FJ185252,U52953,

FJ623489,AY169805,

DQ369994,AF443109

,AF468970,JN860762

,U54771,DQ351229,A

F063224,AY093603,

DQ369982,FJ623486,

AB097870,FJ496192,

EU616640,AY093604

,DQ093599,AB64183

7,AB032740,DQ3699

84,FJ213783,EU2206

,98,GQ365649,AF443

081,AY118165,FJ185

241,GU207884,KC89

8994,AB253702,AB7

31668,FJ495939,AY1

73958,FJ496169,AY5

85267,FJ496083,AB4

85669,DQ056408,FJ3

58521,FJ185231,AB2

87378,KC522032,AY

455783,KF766539,D

0358806,DQ369976,

EF368371,AB254150,

AF286225,AF061641,

DQ093586,AB253427

,DQ487188,AB25370

4,AB097872,AF11096

8,HM469977,GQ1758

82,DQ369988,FJ4962

01,AY900576,EU735

538,DQ017382,AY33

1284,AB253667,AY4

63218,AY463237,FJ4

96005,EF036534,AY8

78058,EF036536,AB5

65496,AY835748,AB

253432,AB564745,AF

,443096,HM469973,A

Y970946,EU110090,

DQ853444,AF197339

,KC522031,FJ496190

,AB646289,EF514701

,AB287376,AY97094

7,FJ496176,DQ01117

0,DQ085873,DD4099

79,AY331286,EF0365

35,DQ859178,GQ999

989,AY618998,AY97

0949,AB221005,AB0

98330,U69591,DQ01

7383,U69584,AY6126

37,JF804807,DQ8534

37,U26942,FJ495818

,FJ496177,KC899006

,EU786679,AY00871

5,AB286852,AY5362

36,AY560107,AB485

668,HM469978,AY17

3956,AB253668,DQO

93598,DQ164108,DQ

396381,JX503071,FJ

496146,DQ093595,L2

0587,AF193277,AF07

5719,DQ011167,JF80

,4813,AY586541,FJ49

6204,AY158535,JF80

4812,AB097873,EU0

31914,AY901970,AY

878056,AB254146,AF

408626,FJ185242,DQ

366666,JQ316138,D

0164124,AB480696,J

X503078,AB253422,

AY703909,AJ866556,

DQ396390,AB253641

,AY314050,FJ496150

,DQ358804,AB28958

7,KC156219,GQ9999

77,JX503083,FJ6234

83,GQ290462,EU293

449,U69587,JN86076

3,DQ056416,AB2536

61,AY314058,AB287

365,DQ164125,AY77

9554,GQ845124,AB4

85652,DQ093605,AY

835781,AF259955,K

C852173,GU733717,

U88825,AB052995,A

Y169802,AY772690,F

J496168,KC156214,F

,J496155,U69588,AB2

86855,KC935959,DQ

400856,JN860765,KC

156114,FR846409,A

Y169806,AF286239,

GQ999987,AB231894

,DQ853462,GQ27761

0,AJQ06287,DQ0564

13,AY463232,AF4430

78,AF332867,DQ676

886,AY169809,AF064

699,DQ366661,AB56

5497,FJ496154,AMOO

0053,AF529572,KC8

99008,AB565499,EU

110096,AB220945,FJ

496004,AY835775,F

R846408,DQ164107,

AY773341,AB253664

,DQ676875,FJ185256

,HM215251,DQ85346

1,AY423382,AB2537

15,U88822,EF637052

,DQ354116,GQ36565

1,DQ056412,AF0421

05,DQ366663,AY878

062,EF175211,EF175

,212,FJ495825,DQ085

871,AY228557,FJ496

161,AF443098,JQ316

133,AY308761,DQ39

6383,JX574662,EU88

4500,AY314060,AY2

71690,EU616644,GQ

999972,M26727,AB2

53683,EU743963,GU

647198,FJ496084,AB

485665,FJ495821,JF

719818,GU595148,D

0676870,EU697907,

JN860761,GU230139

,AB604948,AY83576

6,AF070521,FJ49621

0,FJ496078,EF17521

0,AB253650,AF44310

2,AY169812,DQ3699

85,DQ358807,FJ4961

79,AY535660,AY835

753,AY314044,JF804

814,AB480693,AF443

093,AJ288982,AF385

936,EF514705,AY818

642,AF443100,AY463

225,U69592,EF63704

,7,AJ302646,GU2301

37,U69593,DQ09360

4,AB564744,AF41196

6,AB286955,DQ0564

09,AY779555,AY835

760,EU110093,AB25

3701,JQ316129,DQ6

76879,KC898990,AB

253654,JF719819,AF

443094,EF514697,AY

779563,DQ369980,A

B286858,AB253696,

EF514703,DQ979023

,EF633445,AF529573

,AF076998,AF530576

,AF286230,AY308760

,FJ670520,AY779552

,DQ676872,FJ623478

,AF005496,AB428562

,AY322185,AB25343

0,AY835764,AF06322

3,DQ085869,AY4557

78,DQ351220,AY008

716,AY314051,AY33

1285,DQ886038,DQ3

69987,KC492737,AY

878071,HM469979,A

,Y322184,DQ366664,

KC898989,AF503396

,FJ496162,AB253695

,FR846410,DQ39637

4,FJ496203,AB56547

8,DQ056417,AY9019

81,EF029068,AB2536

75,DQ354123,KC914

396,FJ185247,AY781

125,DQ164123,DQ39

6397,EU110091,AF1

10967,AJ291720,FJ6

23487,AB254151,AF4

43113,AB253724,FJ4

96173,FJ670529,AY8

78072,AB253711,AB

604946,KC156128,A

B428561,DQ369992,

DQ056405,A04321,A

F133821,DQ164126,

FJ496002,DQ845386,

DQ676873,DQ84538

7,AB078005,FJ49618

0,AF286234,EF63704

9,A34828,DQ083238,

AF003888,AF110979,

AF443101,JQ316135,

,FJ670528,DQ093603,

AB485658,AB253722

,AJ302647,DQ05640

6,HM100716,AF2862

24,KC156117,AY331

290,DQ676884,AY88

2421,AY169804,DQ8

53442,EF363123,AB2

53700,DQ396375,M9

3258,EF057102,AY33

1287,DQ396367,AF2

86228,EF036530,FJ4

96145,AB485649,AF0

33819,EF178358,KC

156210,DQ164119,A

F197340,AB480046,E

U541617,KC503854,

DQ085874,AF408632

,KC898981,GU59515

9,EU448296,AY1739

52,AY169811,M1992

1,JQ316137,AB25367

8,KC156122,AB2536

98,EU000506,FJ4961

72,AY463231,DQ011

174,GQ999984,A071

08,AY878061,AY180

,905,AB253660,U4309

6,EF514709,AB25371

0,DQ396368,EU8619

77,DQ853463,DQ853

446,AY314048,JF804

805,DQ676883,DQ36

9989,GU733716,AY4

23387,FJ496165,DQ3

58810,AB480298,AF4

23757,AB565495,AY

585266,AY228556,A

B287366,DQ366660,

AB253725,AB032741

,GQ365650,AY83575

5,DQ676885,JF80481

1,DQ011168,KC8989

95,AB485646,AY237

166,EF469243,AB253

666,FJ496167,AY463

220,AY169815,AF316

544,AB253718,AF290

027,AB231893,DQ39

6376,JX503077,FJ49

6182,FJ495940,FJ49

6211,DQ011176,HM4

69976,DQ676876,FN

392875,AF492624,H

,M067748,AB565479,

DQ859179,DQ85345

9,DQ383746,DQ3512

25,AB485640,AF1109

65,JF804809,EF5147

06,FJ496209,AF0849

36,AF443095,U88824

,DQ164128,FJ496077

,AY049708,AY77956

2,AJ291719,AF42375

9,DQ676881,AF4430

91,KC899010,DQ396

395,AB485636,AF076

474,DQ979025,DQ35

1226,AF042100,AB25

4145,AY588971,AY3

14047,AY970948,KC

935958,AY463234,A

Y536238,AB253646,

DQ056415,FJ185251,

DQ886035,DQ09358

8,FJ496205,AF11097

2,EU735537,AB2536

45,AY835776,A14116

,AB428552,AY70391

1,EF036528,AF49262

3,AY781128,FJ49618

,6,GU595152

Human immunodeficiency
NC_001722
vertebrates,human
41
Retroviridae,Lentivirus,Human
—
AY509260,M15390,M

virus 2

immunodeficiency virus 2

30895,AB499695,AF2

08027,EU028345,AB

485671,JQ4542,U220

47,AB731745,AB731

744,AB485670,AB49

9693,AB731742,AB7

31743,L36874,U3829

3,JQ4498,EU980602,

AY509259,AB731741

,AB731739,L07625,X

52223,AY530889,U27

200,Z48731,M31113,

DQ0835,JQ3654,DQ3

07022,XQ5291,AB731

738,AB499694,A0999

5,X61240,AB731740,

AF082339,AB100245,

E02138,M30502

Human metapneumovirus
NC_004148
vertebrates,human
69
Paramyxoviridae,Metapneumovirus,Human
—
HM197719,KC40397

metapneumovirus

2,DQ843659,KF5301

85,KC403975,KC562

219,KC562222,KC40

3980,KC562228,FJ16

8778,KC562232,KF5

30163,AF371337,KC

,562221,EF535506,K

C403982,JN184400,K

C403984,KF530165,

KC562223,KC562224

,KC562240,JN184399

,KC562230,KF53017

8,KF530183,KC4039

79,KF530177,GQ153

651,KC562229,KC56

2241,KC562231,KC5

62234,KC403981,KF

530171,KC403978,K

C562233,KF530179,

KC403976,KC562238

,AY297748,KC40397

3,KC562242,KC4039

74,KC562226,KC562

235,KC562244,JN184

401,KF530166,KC56

2239,KC403977,KF5

30167,C0840316,KC

562220,KF530173,KF

530181,KF530164,JN

184402,KC403971,A

Y525843,KC562243,

KC562225,KC562227

,AB503857,AY29774

,9,KC403983,FJ16877

9,DQ843658,KC5622

37

Human papillomavirus
NC_016157
vertebrates,human
1
Papillomaviridae,Human papillomavirus 126-
—
JX413105

like viruses

Human papillomavirus
NC_019023
vertebrates,human
2
Papillomaviridae,Human papillomavirus 161-
—
JX413108,JX413109

like viruses

Human papillomavirus
NC_022095
vertebrates,human
2
Papillomaviridae,Human papillomavirus
—
JX444073,HG421739

Human papillomavirus
NC_001596
vertebrates,human
1
Papillomaviridae,Betapapillomavirus,Betapapil
—
EU410347

FA75/KI88-03

lomavirus 2

Human papillomavirus
NC_001531
vertebrates,human
1
Papillomaviridae,Betapapillomavirus,Betapapil
—
U85660

RTRX7

lomavirus 1

Human papillomavirus
NC_001596
vertebrates,human
1
Papillomaviridae,Betapapillomavirus,Betapapil
—
FN598907

SIBX-3a

lomavirus 2

Human papillomavirus
NC_005134
vertebrates,human
1
Papillomaviridae,Betapapillomavirus,Betapapil
—
FN677755

SIBX1

lomavirus 5

Human papillomavirus
NC_001596
vertebrates,human
1
Papillomaviridae,Betapapillomavirus,Betapapil
—
FN677756

SIBX2

lomavirus 2

Human papillomavirus
NC_001596
vertebrates,human
1
Papillomaviridae,Betapapillomavirus,Betapapil
—
HE963025

SIBX8

lomavirus 2

Human papillomavirus type
NC_001596
vertebrates,human
1
Papillomaviridae,Betapapillomavirus,Betapapil
—
FM955839

100

lomavirus 2

Human papillomavirus type
NC_001596
vertebrates,human
1
Papillomaviridae,Betapapillomavirus,Betapapil
—
FM955840

104

lomavirus 2

Human papillomavirus type
NC_001531
vertebrates,human
1
Papillomaviridae,Betapapillomavirus,Betapapil
—
FM955841

105

lomavirus 1

Human papillomavirus type
NC_001596
vertebrates,human
1
Papillomaviridae,Betapapillomavirus,Betapapil
—
EF422221

107

lomavirus 2

Human papillomavirus type
NC_001596
vertebrates,human
1
Papillomaviridae,Betapapillomavirus,Betapapil
—
EU410348

110

lomavirus 2

Human papillomavirus type
NC_001596
vertebrates,human
1
Papillomaviridae,Betapapillomavirus,Betapapil
—
EU410349

111

lomavirus 2

Human papillomavirus type
NC_001596
vertebrates,human
1
Papillomaviridae,Betapapillomavirus,Betapapil
—
FM955842

113

lomavirus 2

Human papillomavirus type
NC_001591
vertebrates,human
1
Papillomaviridae,Betapapillomavirus,Betapapil
—
FJ947080

115

lomavirus 3

Human papillomavirus type
NC_001531
vertebrates,human
1
Papillomaviridae,Betapapillomavirus,Betapapil
—
GQ246951

118

lomavirus 1

Human papillomavirus type
NC_001531
vertebrates,human
1
Papillomaviridae,Betapapillomavirus,Betapapil
—
X74466

12

lomavirus 1

Human papillomavirus type
NC_001596
vertebrates,human
3
Papillomaviridae,Betapapillomavirus,Betapapil
—
GQ845442,JQ963484

120

lomavirus 2

,JQ963485

Human papillomavirus type
NC_001596
vertebrates,human
1
Papillomaviridae,Betapapillomavirus,Betapapil
—
GQ845444

122

lomavirus 2

Human papillomavirus type
NC_001531
vertebrates,human
1
Papillomaviridae,Betapapillomavirus,Betapapil
—
GQ845446

124

lomavirus 1

Human papillomavirus type
NC_016157
vertebrates,human
1
Papillomaviridae,Human papillomavirus 126-
—
AB646346

126

like viruses

Human papillomavirus type
NC_017993
vertebrates,human
1
Papillomaviridae,Human papillomavirus type
—
HM999987

135

135

Human papillomavirus type
NC_017994
vertebrates,human
1
Papillomaviridae,Human papillomavirus type
—
HM999988

136

136

Human papillomavirus type
NC_017995
vertebrates,human
1
Papillomaviridae,Human papillomavirus type
—
HM999989

137

137

Human papillomavirus type
NC_017996
vertebrates,human
1
Papillomaviridae,Human papillomavirus type
—
HM999992

140

140

Human papillomavirus type
NC_017997
vertebrates,human
1
Papillomaviridae,Human papillomavirus type
—
HM999996

144

144

Human papillomavirus type
NC_001531
vertebrates,human
1
Papillomaviridae,Betapapillomavirus,Betapapil
—
X74467

14D

lomavirus 1

Human papillomavirus type
NC_001596
vertebrates,human
1
Papillomaviridae,Betapapillomavirus,Betapapil
—
X74468

15

lomavirus 2

Human papillomavirus type
NC_021483
vertebrates,human
1
Papillomaviridae,Human papillomavirus type
—
JN211193

154

154

Human papillomavirus type
NC_019023
vertebrates,human
1
Papillomaviridae,Human papillomavirus 161-
—
JX413104

166

like viruses

Human papillomavirus type
NC_001596
vertebrates,human
2
Papillomaviridae,Betapapillomavirus,Betapapil
—
X74469,JN211195

17

lomavirus 2

Human papillomavirus type
NC_001531
vertebrates,human
1
Papillomaviridae,Betapapillomavirus,Betapapil
—
X74470

19

lomavirus 1

Human papillomavirus type
NC_001531
vertebrates,human
1
Papillomaviridae,Betapapillomavirus,Betapapil
—
U31778

20

lomavirus 1

Human papillomavirus type
NC_001531
vertebrates,human
1
Papillomaviridae,Betapapillomavirus,Betapapil
—
U31779

21

lomavirus 1

Human papillomavirus type
NC_001596
vertebrates,human
1
Papillomaviridae,Betapapillomavirus,Betapapil
—
U31780

22

lomavirus 2

Human papillomavirus type
NC_001596
vertebrates,human
1
Papillomaviridae,Betapapillomavirus,Betapapil
—
U31781

23

lomavirus 2

Human papillomavirus type
NC_001531
vertebrates,human
1
Papillomaviridae,Betapapillomavirus,Betapapil
—
U31782

24

lomavirus 1

Human papillomavirus type
NC_001531
vertebrates,human
1
Papillomaviridae,Betapapillomavirus,Betapapil
—
X74471

25

lomavirus 1

Human papillomavirus type
NC_001531
vertebrates,human
1
Papillomaviridae,Betapapillomavirus,Betapapil
—
U31785

36

lomavirus 1

Human papillomavirus type
NC_001596
vertebrates,human
1
Papillomaviridae,Betapapillomavirus,Betapapil
—
U31786

37

lomavirus 2

Human papillomavirus type
NC_001596
vertebrates,human
2
Papillomaviridae,Betapapillomavirus,Betapapil
—
JN211196,U31787

38

lomavirus 2

Human papillomavirus type
NC_001596
vertebrates,human
1
Papillomaviridae,Betapapillomavirus,Betapapil
—
DQ090005

38b

lomavirus 2

Human papillomavirus type
NC_001531
vertebrates,human
1
Papillomaviridae,Betapapillomavirus,Betapapil
—
M32305

47

lomavirus 1

Human papillomavirus type
NC_001591
vertebrates,human
1
Papillomaviridae,Betapapillomavirus,Betapapil
—
X74480

49

lomavirus 3

Human papillomavirus type
NC_001531
vertebrates,human
3
Papillomaviridae,Betapapillomavirus,Betapapil
—
M17463,M22961,JN2

5

lomavirus 1

11194

Human papillomavirus type
NC_001531
vertebrates,human
1
Papillomaviridae,Betapapillomavirus,Betapapil
—
D90252

5b

lomavirus 1

Human papillomavirus type
NC_001591
vertebrates,human
1
Papillomaviridae,Betapapillomavirus,Betapapil
—
Y15173

75

lomavirus 3

Human papillomavirus type
NC_001591
vertebrates,human
1
Papillomaviridae,Betapapillomavirus,Betapapil
—
Y15174

76

lomavirus 3

Human papillomavirus type
NC_001531
vertebrates,human
1
Papillomaviridae,Betapapillomavirus,Betapapil
—
M12737

8

lomavirus 1

Human papillomavirus type
NC_001596
vertebrates,human
1
Papillomaviridae,Betapapillomavirus,Betapapil
—
Y15176

80

lomavirus 2

Human papillomavirus type
NC_001596
vertebrates,human
1
Papillomaviridae,Betapapillomavirus,Betapapil
—
X74464

9

lomavirus 2

Human papillomavirus type
NC_004500
vertebrates,human
1
Papillomaviridae,Betapapillomavirus,Betapapil
—
AF531420

92

lomavirus 4

Human papillomavirus type
NC_001531
vertebrates,human
1
Papillomaviridae,Betapapillomavirus,Betapapil
—
AY382778

93

lomavirus 1

Human papillomavirus type
NC_005134
vertebrates,human
1
Papillomaviridae,Betapapillomavirus,Betapapil
—
AY382779

96

lomavirus 5

Human papillomavirus type
NC_001531
vertebrates,human
1
Papillomaviridae,Betapapillomavirus,Betapapil
—
FM955837

98

lomavirus 1

Human papillomavirus type
NC_001531
vertebrates,human
1
Papillomaviridae,Betapapillomavirus,Betapapil
—
FM955838

99

lomavirus 1

Human parainfluenza virus
NC_003461
vertebrates,human
21
Paramyxoviridae,Respirovirus,Human
—
KF687315,KF687307,

1

parainfluenza virus 1

KF687312,KF530217,

KF687314,KF530205,

KF530215,KF687316,

KF530212,KF530220,

KF687308,KF530202,

KF530221,KF687310,

KF530203,KF687311,

KF530209,AF457102,

KF530198,KF687313,

KF687309

Human parainfluenza virus
NC_003443
vertebrates,human
5
Paramyxoviridae,Rubulavirus,Human
—
X57559,AF533012,A

2

parainfluenza virus 2

B176531,AF533010,A

F533011

Human parainfluenza virus
NC_001796
vertebrates,human
47
Paramyxoviridae,Respirovirus,Human
—
KF530242,KF530231,

3

parainfluenza virus 3

KF530230,KF530228,

KF530229,KF530241,

KF687355,KF687319,

KF687342,KF530234,

KF530251,KF530233,

KF687338,KF530232,

,KF687317,AB012132,

KF687321,KF530257,

KF687356,KF687331,

KF687350,KF687318,

KF530245,KF530225,

KF530253,KF530237,

KF687341,U51116,E

U424062,KF687329,

KF530249,KF530252,

KF530256,KF687335,

KF687336,KF687340,

KF530236,EU326526

,KF687337,KF530243

,Z11575,KF530247,K

F530239,FJ455842,K

F687346,KF530250,K

F530226

Human parainfluenza virus
NC_021928
vertebrates,human
2
Paramyxoviridae,Rubulavirus,Human
—
KF483663,AB543336

4a

parainfluenza virus 4

Human parainfluenza virus
NC_021928
vertebrates,human
3
Paramyxoviridae,Rubulavirus,Human
—
EU627591,JQ241176

4b

parainfluenza virus 4

,AB543337

Human parvovirus B19
NC_000883
vertebrates,human
8
Parvoviridae,Erythrovirus,Human parvovirus
—
AY504945,FJ591158,

B19

AY386330,AY083234

,AF162273,FN598218

,FN598217,AB55033

1

Human picobirnavirus
NC_007026
vertebrates,human
1
Picobirnaviridae,Picobirnavirus,Human
seg. 1
AB186897

,

picobirnavirus

Human picobirnavirus
NC_007027
vertebrates,human
1
Picobirnaviridae,Picobirnavirus,Human
seg. 2
AB186898

picobirnavirus

Human poliovirus 1
NC_002058
vertebrates,human
126
Picornaviridae,Enterovirus,Enterovirus C
—
AF111984,KC880377

,AB180072,AF405667

,KC880375,AF40568

7,EF682358,AB18007

0,AF405679,AF46241

9,AJ132960,GQ9841

41,KF537633,AY9283

85,AY928387,AF4056

88,KC880382,KC880

370,EF682359,EF682

356,AF405683,FJ769

379,EF682357,AY278

553,FJ859063,AF111

961,FJ859059,EU794

955,AF111982,EF682

345,AJ430385,AF405

666,KC880366,AF40

5673,AF538840,FJ85

9058,KC880368,AF4

05677,EU794961,EF

682355,FJ769380,EU

794960,FJ859062,KC

880379,AF405674,V0

1148,AF111966,FJ76

,9381,EF682346,AF40

5680,AF405669,KC8

80367,FJ769385,EU7

94962,AF405676,FJ7

69383,AF405668,AF4

16342,EU794954,AF

405689,EU794953,K

C880378,AF405671,

AY560657,AF458333,

AF405682,AF405684,

FJ859061,FJ769378,

FJ769384,EU794964,

EF682343,AF405664,

KC880369,AF405678

,FJ859064,AJ416942,

EU794956,EF682348

,AF538841,AB180071

,EU794958,KC88037

6,AB180073,KC8803

73,EF682344,AF4056

65,EF682354,AF4056

75,EF682351,AF1119

83,FJ859060,KC8803

71,AF111953,AF5388

43,EU794959,EU794

957,KC880380,AY92

8386,AF538842,EF68

,2349,KC880381,AF4

05685,EF682353,EF6

82347,EF456706,KC

880372,AF405662,EF

682350,AF462418,AF

405672,AY184219,AF

405670,AF405686,K

C880365,EF682352,

EU794963,KC880374

,AF405663,FJ769382

,AY928383,AJ132961

,AY928384,AF405690

,AF405681,AF111981

Human poliovirus 1 strain
NC_002058
vertebrates,human
1
Picornaviridae,Enterovirus,Enterovirus C
—
V01150

Sabin

Human poliovirus 2
NC_002058
vertebrates,human
66
Picornaviridae,Enterovirus,Enterovirus C
—
JX274984,AY278549,

JX275380,AM884185

,HM107833,JX27508

5,JX275238,JX27514

0,JX275147,HM1078

35,JX275266,AY2785

52,FJ898290,AM0842

24,AM040037,AM884

184,DQ890388,JX27

5184,HM107832,HM1

07834,JX274993,DQ

890387,FJ460224,AY

184220,DQ205099,M

12197,JX274983,AY2

78550,KC784368,DQ

890385,AM084225,FJ

460225,AY238473,A

M040039,DQ0625,KC

784367,DQ890386,A

Y278551,JX274985,F

,J517649,AM040038,

XQ0595,JX275015,A

M084223,JX274980,

AY948201,AM040035

,FJ460223,JX274999,

JX274991,JX274982,

AJ544513,JX275008,

JX274995,AY177685,

JX275352,AM040036

,JX274981,AF448782

,FJ517648,JX275032,

JX275071,JX275162,

JX274987,AF448783,

GU390707

Human poliovirus 3
NC_002058
vertebrates,human
18
Picornaviridae,Enterovirus,Enterovirus C
—
FJ914252,EF456707,

FJ842159,K01392,KC

784372,FJ460226,XQ

0925,FJ842158,AY18

4221,GU180608,GU2

56222,XQ4468,AJ293

918,AF541919,XQ059

6,EU684056,EU6840

57,FJ460227

Human respiratory
NC_001781
vertebrates,human
122
Paramyxoviridae,Pneumovirus,Human
—
JXQ15498,JQ901450,

syncytial virus

respiratory syncytial virus

GU591771,GU59176

8,JX576739,JX57674

,5,JQ901456,JF92006

5,JQ901447,KF53026

1,JX576750,JX57674

1,JX576742,JX57675

6,GU591769,GU5917

59,JQ901457,JXQ154

99,JX576730,JXQ154

80,KF530268,JX5767

40,JXQ15484,JQ9014

58,JX627336,M74568

,JX576736,JXQ69803,

JXQ69801,JXQ15489,

JF920052,AF013255,

JXQ15494,JX576738,

JX576759,JF920058,

JXQ15491,JXQ15496,

JQ901449,JXQ15490,

JX576751,JXQ69800,

JQ901453,KF530269,

JF920049,JX576735,

JX576733,JQ901448,

JX576737,JXQ15486,

GU591767,JQ901455

,JXQ15481,AB846662

,GU591761,JF920062

,AF013254,JXQ69798

,GU591758,JXQ1548

,5,JX576753,JX57675

7,JX576732,JX57674

9,JX576731,U63644,

JX576743,JX576754,

GU591760,JXQ69802

,JXQ69799,JQ901454

,JQ582844,GU59177

0,GU591764,JX5767

55,JF920053,GU5917

66,JXQ15483,JX5767

46,JX576734,U50362

,FJ948820,JQ901452

,JXQ15488,KC978856

,JX576758,KF530260

,JF920050,JF920047,

JQ901451,JF920046,

JF920054,JX576762,

GU591762,JQ582843

,KC731483,AY91126

2,JX576729,KC73148

2,U50363,JXQ15493,

JF920057,GU591763,

JX576752,JF920059,

JXQ15482,JXQ15487,

JX576747,JF920051,

JX576760,JF920069,

AF035006,JXQ15497,

,JXQ15495,GU591765

,JX576744,JX576761,

JF920048,JXQ15479,

JXQ15492,JX576748

Human respiratory
NC_001781
vertebrates,human
1
Paramyxoviridae,Pneumovirus,Human
—
U39662

syncytial virus S2

respiratory syncytial virus

Human rhinovirus 1
NC_001617
vertebrates,human
1
Picornaviridae,Enterovirus,Rhinovirus A
—
FJ445111

Human rhinovirus 10
NC_001617
vertebrates,human
2
Picornaviridae,Enterovirus,Rhinovirus A
—
DQ473498,FJ445178

Human rhinovirus 100
NC_001617
vertebrates,human
1
Picornaviridae,Enterovirus,Rhinovirus A
—
FJ445175

Human rhinovirus 11
NC_001617
vertebrates,human
1
Picornaviridae,Enterovirus,Rhinovirus A
—
EF173414

Human rhinovirus 12
NC_001617
vertebrates,human
1
Picornaviridae,Enterovirus,Rhinovirus A
—
EF173415

Human rhinovirus 13
NC_001617
vertebrates,human
2
Picornaviridae,Enterovirus,Rhinovirus A
—
FJ445116,FJ445117

Human rhinovirus 14
NC_001490
vertebrates,human
2
Picornaviridae,Enterovirus,Rhinovirus B
—
L05355,K02121

Human rhinovirus 15
NC_001617
vertebrates,human
1
Picornaviridae,Enterovirus,Rhinovirus A
—
DQ473493

Human rhinovirus 16
NC_001617
vertebrates,human
1
Picornaviridae,Enterovirus,Rhinovirus A
—
L24917

Human rhinovirus 17
NC_001490
vertebrates,human
1
Picornaviridae,Enterovirus,Rhinovirus B
—
EF173420

Human rhinovirus 18
NC_001617
vertebrates,human
1
Picornaviridae,Enterovirus,Rhinovirus A
—
FJ445118

Human rhinovirus 19
NC_001617
vertebrates,human
1
Picornaviridae,Enterovirus,Rhinovirus A
—
FJ445119

Human rhinovirus 1B
NC_001617
vertebrates,human
1
Picornaviridae,Enterovirus,Rhinovirus A
—
DQ0239

Human rhinovirus 2
NC_001617
vertebrates,human
1
Picornaviridae,Enterovirus,Rhinovirus A
—
XQ2316

Human rhinovirus 20
NC_001617
vertebrates,human
1
Picornaviridae,Enterovirus,Rhinovirus A
—
FJ445120

Human rhinovirus 21
NC_001617
vertebrates,human
1
Picornaviridae,Enterovirus,Rhinovirus A
—
FJ445121

Human rhinovirus 22
NC_001617
vertebrates,human
1
Picornaviridae,Enterovirus,Rhinovirus A
—
FJ445122

Human rhinovirus 23
NC_001617
vertebrates,human
1
Picornaviridae,Enterovirus,Rhinovirus A
—
DQ473497

Human rhinovirus 24
NC_001617
vertebrates,human
2
Picornaviridae,Enterovirus,Rhinovirus A
—
FJ445190,EF173416

Human rhinovirus 25
NC_001617
vertebrates,human
1
Picornaviridae,Enterovirus,Rhinovirus A
—
FJ445123

Human rhinovirus 26
NC_001490
vertebrates,human
1
Picornaviridae,Enterovirus,Rhinovirus B
—
FJ445124

Human rhinovirus 27
NC_001490
vertebrates,human
2
Picornaviridae,Enterovirus,Rhinovirus B
—
FJ445186,EF173421

Human rhinovirus 28
NC_001617
vertebrates,human
1
Picornaviridae,Enterovirus,Rhinovirus A
—
DQ473508

Human rhinovirus 29
NC_001617
vertebrates,human
1
Picornaviridae,Enterovirus,Rhinovirus A
—
FJ445125

Human rhinovirus 3
NC_001490
vertebrates,human
2
Picornaviridae,Enterovirus,Rhinovirus B
—
DQ473485,EF173422

Human rhinovirus 30
NC_001617
vertebrates,human
2
Picornaviridae,Enterovirus,Rhinovirus A
—
FJ445179,DQ473512

Human rhinovirus 31
NC_001617
vertebrates,human
1
Picornaviridae,Enterovirus,Rhinovirus A
—
FJ445126

Human rhinovirus 32
NC_001617
vertebrates,human
1
Picornaviridae,Enterovirus,Rhinovirus A
—
FJ445127

Human rhinovirus 33
NC_001617
vertebrates,human
1
Picornaviridae,Enterovirus,Rhinovirus A
—
FJ445128

Human rhinovirus 34
NC_001617
vertebrates,human
2
Picornaviridae,Enterovirus,Rhinovirus A
—
FJ445189,DQ473501

Human rhinovirus 35
NC_001490
vertebrates,human
2
Picornaviridae,Enterovirus,Rhinovirus B
—
FJ445187,DQ473487

Human rhinovirus 36
NC_001617
vertebrates,human
1
Picornaviridae,Enterovirus,Rhinovirus A
—
DQ473505

Human rhinovirus 37
NC_001490
vertebrates,human
1
Picornaviridae,Enterovirus,Rhinovirus B
—
EF173423

Human rhinovirus 38
NC_001617
vertebrates,human
2
Picornaviridae,Enterovirus,Rhinovirus A
—
DQ473495,FJ445180

Human rhinovirus 39
NC_001617
vertebrates,human
1
Picornaviridae,Enterovirus,Rhinovirus A
—
AY751783

Human rhinovirus 4
NC_001490
vertebrates,human
1
Picornaviridae,Enterovirus,Rhinovirus B
—
DQ473490

Human rhinovirus 40
NC_001617
vertebrates,human
1
Picornaviridae,Enterovirus,Rhinovirus A
—
FJ445129

Human rhinovirus 41
NC_001617
vertebrates,human
1
Picornaviridae,Enterovirus,Rhinovirus A
—
DQ473491

Human rhinovirus 42
NC_001490
vertebrates,human
1
Picornaviridae,Enterovirus,Rhinovirus B
—
FJ445130

Human rhinovirus 43
NC_001617
vertebrates,human
1
Picornaviridae,Enterovirus,Rhinovirus A
—
FJ445131

Human rhinovirus 44
NC_001617
vertebrates,human
1
Picornaviridae,Enterovirus,Rhinovirus A
—
DQ473499

Human rhinovirus 45
NC_001617
vertebrates,human
1
Picornaviridae,Enterovirus,Rhinovirus A
—
FJ445132

Human rhinovirus 46
NC_001617
vertebrates,human
1
Picornaviridae,Enterovirus,Rhinovirus A
—
DQ473506

Human rhinovirus 47
NC_001617
vertebrates,human
1
Picornaviridae,Enterovirus,Rhinovirus A
—
FJ445133

Human rhinovirus 48
NC_001490
vertebrates,human
1
Picornaviridae,Enterovirus,Rhinovirus B
—
DQ473488

Human rhinovirus 49
NC_001617
vertebrates,human
2
Picornaviridae,Enterovirus,Rhinovirus A
—
FJ445134,DQ473496

Human rhinovirus 5
NC_001490
vertebrates,human
1
Picornaviridae,Enterovirus,Rhinovirus B
—
FJ445112

Human rhinovirus 50
NC_001617
vertebrates,human
1
Picornaviridae,Enterovirus,Rhinovirus A
—
FJ445135

Human rhinovirus 51
NC_001617
vertebrates,human
1
Picornaviridae,Enterovirus,Rhinovirus A
—
FJ445136

Human rhinovirus 52
NC_001490
vertebrates,human
3
Picornaviridae,Enterovirus,Rhinovirus B
—
FJ445137,EF173424,

FJ445188

Human rhinovirus 53
NC_001617
vertebrates,human
1
Picornaviridae,Enterovirus,Rhinovirus A
—
DQ473507

Human rhinovirus 54
NC_001617
vertebrates,human
2
Picornaviridae,Enterovirus,Rhinovirus A
—
FJ445138,FJ445139

Human rhinovirus 55
NC_001617
vertebrates,human
1
Picornaviridae,Enterovirus,Rhinovirus A
—
DQ473511

Human rhinovirus 56
NC_001617
vertebrates,human
1
Picornaviridae,Enterovirus,Rhinovirus A
—
FJ445140

Human rhinovirus 57
NC_001617
vertebrates,human
1
Picornaviridae,Enterovirus,Rhinovirus A
—
FJ445141

Human rhinovirus 58
NC_001617
vertebrates,human
1
Picornaviridae,Enterovirus,Rhinovirus A
—
FJ445142

Human rhinovirus 59
NC_001617
vertebrates,human
1
Picornaviridae,Enterovirus,Rhinovirus A
—
DQ473500

Human rhinovirus 6
NC_001490
vertebrates,human
1
Picornaviridae,Enterovirus,Rhinovirus B
—
DQ473486

Human rhinovirus 60
NC_001617
vertebrates,human
1
Picornaviridae,Enterovirus,Rhinovirus A
—
FJ445143

Human rhinovirus 61
NC_001617
vertebrates,human
1
Picornaviridae,Enterovirus,Rhinovirus A
—
FJ445144

Human rhinovirus 62
NC_001617
vertebrates,human
1
Picornaviridae,Enterovirus,Rhinovirus A
—
FJ445145

Human rhinovirus 63
NC_001617
vertebrates,human
1
Picornaviridae,Enterovirus,Rhinovirus A
—
FJ445146

Human rhinovirus 64
NC_001617
vertebrates,human
2
Picornaviridae,Enterovirus,Rhinovirus A
—
EF173417,FJ445181

Human rhinovirus 65
NC_001617
vertebrates,human
1
Picornaviridae,Enterovirus,Rhinovirus A
—
FJ445147

Human rhinovirus 66
NC_001617
vertebrates,human
1
Picornaviridae,Enterovirus,Rhinovirus A
—
FJ445148

Human rhinovirus 67
NC_001617
vertebrates,human
1
Picornaviridae,Enterovirus,Rhinovirus A
—
FJ445149

Human rhinovirus 68
NC_001617
vertebrates,human
1
Picornaviridae,Enterovirus,Rhinovirus A
—
FJ445150

Human rhinovirus 69
NC_001490
vertebrates,human
1
Picornaviridae,Enterovirus,Rhinovirus B
—
FJ445151

Human rhinovirus 7
NC_001617
vertebrates,human
2
Picornaviridae,Enterovirus,Rhinovirus A
—
DQ473503,FJ445176

Human rhinovirus 70
NC_001490
vertebrates,human
1
Picornaviridae,Enterovirus,Rhinovirus B
—
DQ473489

Human rhinovirus 71
NC_001617
vertebrates,human
1
Picornaviridae,Enterovirus,Rhinovirus A
—
FJ445152

Human rhinovirus 72
NC_001490
vertebrates,human
1
Picornaviridae,Enterovirus,Rhinovirus B
—
FJ445153

Human rhinovirus 73
NC_001617
vertebrates,human
1
Picornaviridae,Enterovirus,Rhinovirus A
—
DQ473492

Human rhinovirus 74
NC_001617
vertebrates,human
1
Picornaviridae,Enterovirus,Rhinovirus A
—
DQ473494

Human rhinovirus 75
NC_001617
vertebrates,human
1
Picornaviridae,Enterovirus,Rhinovirus A
—
DQ473510

Human rhinovirus 76
NC_001617
vertebrates,human
2
Picornaviridae,Enterovirus,Rhinovirus A
—
FJ445182,DQ473502

Human rhinovirus 77
NC_001617
vertebrates,human
1
Picornaviridae,Enterovirus,Rhinovirus A
—
FJ445154

Human rhinovirus 78
NC_001617
vertebrates,human
2
Picornaviridae,Enterovirus,Rhinovirus A
—
FJ445183,EF173418

Human rhinovirus 79
NC_001490
vertebrates,human
1
Picornaviridae,Enterovirus,Rhinovirus B
—
FJ445155

Human rhinovirus 8
NC_001617
vertebrates,human
1
Picornaviridae,Enterovirus,Rhinovirus A
—
FJ445113

Human rhinovirus 80
NC_001617
vertebrates,human
1
Picornaviridae,Enterovirus,Rhinovirus A
—
FJ445156

Human rhinovirus 81
NC_001617
vertebrates,human
3
Picornaviridae,Enterovirus,Rhinovirus A
—
FJ445159,FJ445158,

FJ445157

Human rhinovirus 82
NC_001617
vertebrates,human
1
Picornaviridae,Enterovirus,Rhinovirus A
—
FJ445160

Human rhinovirus 83
NC_001490
vertebrates,human
1
Picornaviridae,Enterovirus,Rhinovirus B
—
FJ445161

Human rhinovirus 84
NC_001490
vertebrates,human
1
Picornaviridae,Enterovirus,Rhinovirus B
—
FJ445162

Human rhinovirus 85
NC_001617
vertebrates,human
1
Picornaviridae,Enterovirus,Rhinovirus A
—
FJ445163

Human rhinovirus 86
NC_001490
vertebrates,human
1
Picornaviridae,Enterovirus,Rhinovirus B
—
FJ445164

Human rhinovirus 88
NC_001617
vertebrates,human
1
Picornaviridae,Enterovirus,Rhinovirus A
—
DQ473504

Human rhinovirus 89
NC_001617
vertebrates,human
4
Picornaviridae,Enterovirus,Rhinovirus A
—
FJ445166,M16248,FJ

445165,FJ445184

Human rhinovirus 9
NC_001617
vertebrates,human
3
Picornaviridae,Enterovirus,Rhinovirus A
—
FJ445114,FJ445177,

FJ445115

Human rhinovirus 90
NC_001617
vertebrates,human
1
Picornaviridae,Enterovirus,Rhinovirus A
—
FJ445167

Human rhinovirus 91
NC_001490
vertebrates,human
1
Picornaviridae,Enterovirus,Rhinovirus B
—
FJ445168

Human rhinovirus 92
NC_001490
vertebrates,human
1
Picornaviridae,Enterovirus,Rhinovirus B
—
FJ445169

Human rhinovirus 93
NC_001490
vertebrates,human
1
Picornaviridae,Enterovirus,Rhinovirus B
—
EF173425

Human rhinovirus 94
NC_001617
vertebrates:human
2
Picornaviridae,Enterovirus,Rhinovirus A
—
EF173419,FJ445185

Human rhinovirus 95
NC_001617
vertebrates,human
1
Picornaviridae,Enterovirus,Rhinovirus A
—
FJ445170

Human rhinovirus 96
NC_001617
vertebrates,human
1
Picornaviridae,Enterovirus,Rhinovirus A
—
FJ445171

Human rhinovirus 97
NC_001490
vertebrates,human
1
Picornaviridae,Enterovirus,Rhinovirus B
—
FJ445172

Human rhinovirus 98
NC_001617
vertebrates,human
1
Picornaviridae,Enterovirus,Rhinovirus A
—
FJ445173

Human rhinovirus 99
NC_001490
vertebrates,human
1
Picornaviridae,Enterovirus,Rhinovirus B
—
FJ445174

Human rhinovirus A
NC_001617
vertebrates,human
17
Picornaviridae,Enterovirus,Rhinovirus A
—
GQ415051,JF285322,

JF285324,JN837692,

JF285321 ,JN798589,

JN815250,JF285323,

JQ747751 ,DQ473509 ,

JN798583,JN798561 ,

GQ415052,A10937,

J N837697,JF285329,

J N798556

Human rhinovirus B
NC_001490
vertebrates,human
9
Picornaviridae,Enterovirus,Rhinovirus B
—
JN815239,JN798573,

J F285330, J F285308,

J F285309, J N 798588,

JQ994497,JF285331,

JQ245969

Human rhinovirus B72
NC_001490
vertebrates,human
1
Picornaviridae,Enterovirus,Rhinovirus B
—
GU968948

Human rotavirus
NC_011504
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg.
U59104

(SEROTYPE 2/

10

STRAIN S2)

Human rotavirus
NC_011500
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 5
D38150

(STRAIN L26)

Human rotavirus
NC_011504
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg.
U59103

(STRAIN RV5)

10

Human rotavirus
NC_011504
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg.
AF079358

(strain US1205)

10

Human rotavirus
NC_011509
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 6
AF079357

(strain US1205)

Human rotavirus
NC_011510
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 4
AF079356

(strain US1205)

Human rotavirus 1
NC_011504
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg.
U59108

strain RV4

10

Human rotavirus A
NC_011500
vertebrates,human
20
Reoviridae,Rotavirus,Rotavirus A
seg. 5
EF672557,JF766584,

FJ423117,EF672620,

FJ423139,AF190169,

GU189555,Z32552,

JF766595,EF672613,

EF672592,U11492,

FJ423156,JF766573,

JF421981,L18943,

D38151,HM627559,

EF672564,FJ423128

Human rotavirus A
NC_011501
vertebrates,human
95
Reoviridae,Rotavirus,Rotavirus A
seg. 7
JN706641,JF304934,

FJ423141 ,EU984100,

EF672572,EF672580,

JN869275,JF304923,

AY787648,EU520416,

JN706640,AB741657,

JX946176,JN706620,

FJ747622,JN706624,

AF506014,JN706633,

DQ005107,GU18955

7,JN706628,JN70662

3,JX946165,JN70663

9,JF766574,EF67258

6,AB748601,KC1397

87,AF506018,KC149

936,EF672579,JQ863

317,EF672622,EF672

615,JN706622,JX416

216,AF506293,EF672

607,JQ087442,JN869

276,EF554133,EF672

573,EF672600,HQ64

1361,JN706638,JQ71

3650,JQ087431,EF55

4100,EF672594,EU2

00800,JN706625,JN8

69272,AB022770,EF6

72601,JN706627,JF8

04986,JX307623,JX3

07626,EF554089,DQ

005118,FJ423151,JF

421983,JF766585,G

0414548,FJ423119,F

J747633,JX567766,J

X416224,JX307624,H

M627560,KC149929,

JQ087453,EF672608,

EU520415,FJ423130,

JN104617,JN706626,

EF672566,JN706634,

EF554122,JX307625,

JN869274,EF554111,

HQ641370,JN869277

,JN706637,JX416209

,JF766596,JX509932,

EF672587,JN869273,

EF672559,JN706621,

JN706635,JN706631

Human rotavirus A
NC_011502
vertebrates,human
113
Reoviridae,Rotavirus,Rotavirus A
seg. 8
JX307619,EF554090,

JQ715661,AB022771,

JF421982,JN706613,

JX307621,FJ423120,

FJ747621,AF338246,

JN706605,JN706619,

HQ702225,EF672593

,EF672565,JN706614

,FJ423131,AF338248

,AB748596,JN104624

,EF672621,AF190172

,HQ025982,HQ64136

0,EF672614,AF19017

0,EF554123,HQ7022

47,FJ423152,JX5677

65,AF190171,X81435

,AB771768,EF554112

,JN706603,JQ898159

,JX416208,HQ02598

1,GU189556,JX9461

75,JQ713649,JX4162

23,JN706606,HQ670

643,HQ702258,HQ64

1369,EU984099,JN70

6598,JN706616,AB77

1753,JN706604,JX94

6164,KC149935,AY7

87649,KC139786,JQ

715664,JF304922,JN

706601,HM627561,J

F766597,JN706617,E

U200801,AF506015,

DQ005117,JN706610

,JN706602,JX307620

,JX416215,EU868888

,DQ005106,JQ86331

6,HQ702236,FJ42314

2,HQ702214,X81428,

JF766575,JQ715662,

HQ670636,GQ41454

7,JN706611,JN70661

5,AB771770,JN70659

9,JF766586,AB77176

4,X81433,X76645,X8

1425,JN706609,JX30

7622,X81434,JN7066

12,JN706608,JN1046

16,AB741656,EF5541

01,JF304933,EF6725

58,JQ715663,EF5541

34,KC149928,AF506

019,JQ715660,AF338

247,AF541920,X8142

7,FJ747632,JN70660

0,X81437,JX509931,J

N706607,JN706618,X

81436

Human rotavirus A
NC_011503
vertebrates,human
622
Reoviridae,Rotavirus,Rotavirus A
seg. 9
JF965002,JN706202,

JX458968,JQ710665,

GQ414545,GQ99689

6,JN706564,DQ8736

78,JN706267,AB5345

36,JX946173,FJ4475

67,JN706204,JN7065

54,AF260949,JN7065

66,JXQ88016,JF9650

04,AB527037,JN7062

12,JXQ88013,HQ702

259,AB527030,FJ948

854,JX509940,JN706

275,JXQ88018,AB534

532,JN706251,JN706

346,JN706559,AB527

009,JQ043268,JN706

227,FJ152132,AB527

023,HQ738627,FJ529

386,JN706238,GU37

7172,FJ948849,JN70

6210,JF965010,AB18

0969,JQ043273,JN70

6218,AJ278254,JN70

6352,JN706327,JN70

6334,AB527027,AB5

34530,FJ948843,GQ

996882,JX458962,JN

706215,JN706270,X6

3156,DQ923801,EU6

79389,JN706345,JQO

43276,JX458955,JN7

06377,AB527034,JN7

06299,DQ062126,AB

530270,JQ253576,JN

706230,JN706304,AB

527033,AB527014,JF

965000,DQ440616,G

U377151,JXQ88009,J

X470504,JQ289117,J

X470511,DQ062128,

DQ099750,JX567752

,AB527019,EF672595

,JN706310,FJ529395,

EU791924,AB534535

,JN706278,AB527029

,JN706338,FJ747618,

JF766605,JQ043267,

EF672574,JF813102,

AB118024,HQ537522

,JN706367,JN706563

,JN706203,JQ043277

,DQ873679,AF17083

7,AB530268,EF67260

2,JN706336,JN70624

9,JF965005,HQ53751

7,HQ702237,AY6295

60,FJ948833,JQ2535

67,DQ873672,AB527

015,JQ710675,JN706

262,AB527035,HQ73

8621,FJ447570,JN70

6229,EU679390,JN70

6351,GU377136,JQ2

53573,JN706309,AF2

60939,GQ398012,JF

964999,EF672609,JN

706370,JX470508,JQ

710671,FJ948836,JN

706348,JN706295,AF

260942,JX458964,AF

260941,FJ423132,FJ

423143,AF260958,JN

706224,GU377144,J

N706353,FJ747630,E

F077484,AB527025,J

X458966,AF260943,J

N706317,AF170834,J

N706306,JQ710662,

DQ099748,JX103956

,JN706302,JN706341

,AY787646,JN706231

,JX470510,EF672567

,EU679391,JN706291

,JN706556,KC242226

,GQ117003,AF38691

5,EU805775,JN70632

8,AF274971,JF81310

6,JN706319,JQ25357

2,AB527041,DQ8736

73,GQ452924,FJ423

121,JN706240,JN706

232,JN706258,JF964

998,JQ710676,AF260

936,JN706314,JQ253

574,DQ099753,GU37

7148,JX567748,JX47

0506,AB534526,JN70

6378,GU377133,JX4

70513,HQ702248,L21

666,JN706308,JX103

957,JQ253564,JN706

343,HQ738577,JN70

6361,GQ996884,JQO

43270,AY206861,JN7

06364,JN706245,FJ9

48829,JN706558,GQ

996892,JF304931,JF

965009,JN706239,AF

143690,FJ915079,AB

527006,GQ996890,K

C841471,AB534533,

AB530267,JN706255,

AB534520,EU679392

,AB527022,JX567750

,DQ122400,JXQ8801

9,JN706359,AB52704

0,AF143689,JQ25356

3,JN706329,GU3771

74,AY856443,JXQ880

12,JN706305,DQ099

749,DQ873670,JN70

6199,AF274969,AB52

7043,DQ099751,GQ3

98018,HQ537521,JN

706219,JN706266,JN

706294,JX458958,JQ

710669,JN706344,G

0117005,JN706372,J

N706246,AB669005,

AB527028,JN706318,

JN706326,AY456382,

JX470512,AF143688,

FJ948838,JXQ88020,

JN706248,EF554109,

JN706300,JQ818169,

DQ017650,JQ710673

,JN706303,JX567753

,DQ873676,JQ04327

1,JN706313,JN70636

0,AB527020,JN70623

3,DQ111868,AB5270

21,AF260948,JX4705

05,DQ062123,FJ7476

19,AB534522,JX4589

54,GU377164,JQ253

569,JN706254,JXQ88

015,EF672616,JN706

311,EU200798,AB52

7042,JN706339,HQ7

02226,JF965008,GU3

77142,JN706222,DQ

099746,AB530266,AF

260935,JN706366,JN

706369,GQ996849,G

0452923,JX567751,J

0043278,JF742651,J

N706574,GQ996891,

JN706358,HQ738583

,JN706330,JQ710677

,JN706337,AB530269

,AB530274,JN706312

,AB527031,JN706323

,HQ537513,JN70637

3,JN706321,JN70626

8,AB534531,JQ71066

4,JN706217,AB18097

0,JN706264,AB74165

4,AB534523,GQ9968

67,AF500235,DQ062

130,JX458959,JQ863

314,JX307591,GQ45

2926,JN706253,JN70

6237,HQ702215,JN7

06206,GU377135,EF

088831,AB534521,FJ

152121,JN706261,FJ

915078,JN706211,G

U377166,JN706220,

HM627558,JN706247

,JF719063,DQ062124

,JN706276,FJ948839,

JQ253570,GQ996925

,JX458965,AF438228

,JN706228,JN706208

,JN706567,EF159575

,JN706242,JN706315

,JF965001,JQ710666

,HQ537514,EF67256

0,AB534534,JQ71067

4,JF965006,HQ53751

2,JN706292,AB52701

6,FJ915077,AF15961

0,JQ710670,HQ7386

20,FJ948837,AB5270

24,JN706322,JN7063

31,AB527011,JF9650

03,AJ311738,AB5270

17,AB527038,AB530

273,JN706201,JN706

252,DQ099747,AF26

0934,JN706565,AB52

7045,AY631125,GU3

77169,JN706221,JXQ

88014,FJ423153,FJ5

29385,JQ710667,JN7

06560,AB669013,FJ9

48831,JN706307,JN7

06347,AF260959,GQ

996894,AF260957,AF

450293,FJ948853,JN

706374,JN706250,JN

706257,JX307594,G

U377145,AB527008,J

N706320,JN706223,A

F260940,EU984109,J

N706362,FJ529383,D

0099754,EF672623,

AF260937,JX470507,

JN706335,JN706357,

JQ253571,AB534527,

AB534524,JX458956,

JN706333,JN706355,

JN706324,JN706236,

GQ996883,JN706259

,JF304920,AB527044

,GQ996885,JN70620

7,JQ253575,JN70637

9,JN706562,GQ9968

87,JX458960,JN7062

43,JN706214,JN7063

63,EU679394,DQ062

127,JN706575,JN706

568,JX458953,JX307

593,HQ738579,JN70

6296,JN706569,AB53

4528,EF088832,AB52

7007,JN706256,AF50

1580,AB669009,JQ71

0672,GQ996889,AF1

70836,JN706279,FJ9

48845,HQ738622,AF

260946,FJ915094,U0

4350,AB527018,JN70

6350,JN706325,DQ0

62129,AF260933,FJ9

48847,JQ043269,DQ

099752,HQ537519,A

F260938,JN706200,J

N706293,JN706265,J

0253566,GQ996893,

GU377155,JN706571

,JX567749,AB530271

,FJ948832,AB527039

,DQ873669,DQ87367

1,DQ117937,JQ2535

68,JQ253562,GQ117

006,JX110838,JX458

967,JN706557,JN706

572,JN706356,AB530

272,JXQ88011,JN706

375,JN706301,GU37

7159,GQ996886,AB5

27012,KC139779,JQ

710668,JQ713096,JX

458961,AB534525,JX

470509,AB669017,G

0117002,DQ873677,

JN706235,AF409087,

DQ117938,JN706332

,JN706561,JN706371

,JN706244,AY003871

,GQ996888,JN70620

5,JN706365,FJ44756

8,JN706213,AF17083

5,JN706354,JQ34321

9,JQ043274,GQ3980

14,AF260947,JN7063

68,JF421980,FJ9488

51,AF260944,FJ9488

48,JN706573,JN7065

70,JF965007,JX3075

92,JN706225,JN7063

49,AF274970,GQ996

926,EF672588,AB180

974,JX458957,AB527

013,AF260945,JN706

263,AJ278257,JN706

555,JF766594,FJ152

110,M58290,JN70620

9,JN706226,DQ0176

49,GQ117004,JX458

963,JF766583,GU377

143,JXQ88017,EF159

576,JN706269,JN706

340,HQ738628,EU67

9393,JN706216,DQ1

17939,AY630924,AB

527046,JQ043275,JN

706271,JXQ88008,D

0062125,JQ710663,J

N706376,JQ043272,

AF438227,GQ452927

,JN706297,AB527010

,GQ996895,JQ04326

6,GQ117001,JN7063

42,JN706198,GU377

147,JXQ88010,AB527

036,JN706260,DQ92

3797,HQ537518,JN7

06316,JN706298,JQ2

53565,AB527032,AB

534529,AB527026,EF

672581,GU377134,FJ

948830,FJ948855,GU

377150,JN706234,G

0996847

Human rotavirus A
NC_011504
vertebrates,human
294
Reoviridae,Rotavirus,Rotavirus A
seg.
EF672596,JQ043306,

10
AJ236783,GQ465013

,AJ400644,AF469676

,AJ236755,AJ311732,

GQ465018,GQ46502

4,JX307628,AY78765

0,AJ236750,AB23270

0,JX458984,AB32696

2,GQ465019,AB3612

76,JF766576,AY6015

42,EF554113,EF6725

68,GQ465021,AJ400

634,EF159572,AB196

491,AB741658,GQ46

5037,JQ043300,HQ6

41371,AF170833,AB3

26337,FJ915085,AJ4

27314,AY576006,JQO

43311,JN706655,JF7

66587,AY601545,AJ2

36756,JN706657,AJ2

36784,AJ236749,GQ

465034,JF304935,AF

284778,AB022772,JF

813103,AB748606,JX

458977,AB361279,JX

946177,EF159573,D

0299876,FJ152114,E

U679381,AB211988,

AJ400636,JN706644,

D89873,GQ465020,J

X307629,AJ236777,H

M235509,GQ465028,

JN706646,EU679378,

FJ152136,GQ465026

,AB326336,EF672575

,JQ043302,AF541921

,EF672603,DQ92380

3,AB762778,AB1969

59,EU659855,AB0O8

217,FJ423144,JN706

650,JX458980,AF469

679,GU189558,AF26

0928,AF284777,AJ40

0638,AF170831,JQ04

3308,JX458982,JF42

1984,AJ278252,AJ40

0635,JX307630,JF80

4998,JQ898161,GQ4

65015,AJ236775,FJ4

23133,AB196958,AB

201459,GQ465006,J

X307627,AB361282,

AB326343,HM627562

,JN706642,AB213392

,EF159574,JN104626

,GQ465017,AJ23677

1,GQ465036,AB1964

92,FJ915088,AJ4273

16,JN706653,AF1708

30,JN706660,EU6793

77,AY629562,JX4589

69,GQ465031,AB326

339,AF200225,AY601

540,U59106,AJ23677

6,EF089269,JN10461

8,FJ423154,JN70666

1,JX458975,JX45897

0,GQ465032,JQ8633

18,EF672589,GQ465

007,KC139788,AJ236

778,FJ685615,GQ46

5022,EU791925,AB2

11992,AF506291,JQO

43312,JF813107,GQ

465005,AJ427313,AB

213391,AF506016,JN

706648,EU984101,AJ

236770,JQ043304,G

0414549,AB326334,J

X458978,JX416225,A

Y601544,AJ400637,E

F554135,JN706662,G

U138211,AB326348,J

N706658,AB303218,

AB326340,EU679382

,FJ152125,JN706645,

DQ005116,KC890886

,U59107,D88830,GQ

465023,EU679379,JX

458974,JQ713651,AJ

400641,D10772,KC8

90884,JN706647,HQ

641362,EU679380,G

0465035,DQ639954,

AF469678,JX458976,

JQ043305,AB326297,

KC890885,AB211987

,JQ898160,FJ915087

,GQ465025,GQ46501

0,EF672624,JX45898

1,JF766598,AB21199

1,AB763972,D88829,

GQ465009,JN706663

,JX458973,KC890882

,JN706651,AY601541

,AJ236752,AJ236765,

AF260929,AB361284,

KC890883,AF200224

,FJ747634,EF672561

,KC890887,AJ400640

,AB326969,JX458983

,FJ423122,EF672617

,JN706643,AB361289

,GQ465016,DQ92379

9,GQ465014,AB3262

86,JN706659,AF4696

77,AJ400643,AJ2367

79,AJ400639,JN7066

54,JQ043310,AJ2367

85,EF554091,JN7066

56,GU592516,JQ043

309,GQ465011,JN70

6652,AF284780,AJ42

7315,FJ747623,AJ23

6753,EF672582,AJ23

6781,JX458972,GQ4

65008,GQ465030,DO

005105,AB326965,AF

260930,JX458971,AB

326338,JX567767,EF

672610,GQ465029,G

0465033,AF284776,

AJ400642,GQ465012

,U59110,AJ236780,G

0465027,JF804987,A

J236751,AB211989,A

B361288,JQ043303,A

B326342,JN706649,A

B326345,AY601543,

AJ236754,AJ236782,

JX458979,EF554124,

EF554102,D10771,A

B326344,JF805008,A

F170832,AB211990,J

Q043301,EU200802,

JF304924,FJ915086,

AB361277,AJ278255,

JX946166,JQ043307

Human rotavirus A
NC_011505
vertebrates,human
126
Reoviridae,Rotavirus,Rotavirus A
seg.
EF590982,GQ414550

11
,JN872347,AB008659

,EF590987,JN706677

,JX946167,EF672569

,KC139789,AB04521

8,EU200803,AB0086

62,JN706673,HM627

563,U54772,FJ42312

3,JQ043322,EF67259

0,JQ043320,JN70667

5,FJ747635,EF59098

8,EF672576,JF76658

8,JN869288,JQ71568

0,FJ423145,JN70667

8,EF590983,JQ04332

3,KC149937,AB0086

63,JX946178,FJ7476

24,AB035708,EF6725

83,GU189559,AB008

657,EF590981,JN706

680,EF554125,EF590

980,JN706664,JN869

287,AF508732,AB763

974,AB008664,AB00

8656,EF554114,U547

73,AY841126,JN7066

85,AB008658,AY033

396,EF554136,JN706

679,AB045219,JN706

665,AF338245,HQ02

5986,AY787651,AB0

08660,KC149930,HQ

670638,U96698,FJ42

3134,EF590990,AF33

8244,M33607,EF590

991,AY803730,AB04

5217,JN706681,EF59

0989,JN706683,JN86

9284,EF590985,JX41

6210,AB045220,JN86

9289,EF590986,AB76

3975,EF672562,AY76

9694,EU984102,JF76

6577,JN706672,JQ04

3315,JN706674,AB0O

8655,EF672625,JX50

9934,JN706684,JF80

4999,AB741659,JX41

6226,EF554103,EF59

0984,AB022773,X767

79,AF306494,FJ4231

55,JQ043313,AB7486

11,JQ043319,EU791

926,JN706682,EF672

604,EF672618,JN869

285,JN869286,JQ043

318,EF672597,HQ67

0645,AY770974,JN70

6676,EF672611,JX56

7768,JF766599,JQ04

3321,AY601548,AB0

08661,HQ025985,AY

769695,JF804988,JF

421985

Human rotavirus A
NC_011506
vertebrates,human
73
Reoviridae,Rotavirus,Rotavirus A
seg. 2
HQ025976,JF766579,

GQ414541,HM62755

4,EF583050,GU1895

52,JN706476,EU9841

04,FJ423125,FJ7476

14,JX567761,DQ480

724,DQ005113,EF55

4083,EF583026,HQ6

70633,JX416219,JN7

06469,EF583034,EF5

83022,EF583030,JN7

06487,JF421976,JN7

06477,JX416212,JF7

66590,FJ423114,EF5

83014,EU200794,JX9

46169,EF583038,JN7

06483,JN706478,JN7

06467,EF554116,DQ

862063,AB022766,JX

416205,JN706468,JF

766601,EF583046,FJ

423147,FJ423136,JX

946160,JX509936,EF

583042,EF554127,JN

104612,JN706471,JN

706484,JN706473,JN

706486,EF583018,FJ

747626,JQ713646,JN

706485,JN706480,AY

787652,JN706470,JN

706479,JN706481,EF

554094,AB741650,D

0005124,JN706474,

KC139782,JN706466,

HQ025975,EF554105

,JQ863310,JN706475

,JN706482,JN706472

Human rotavirus A
NC_011507
vertebrates,human
81
Reoviridae,Rotavirus,Rotavirus A
seg. 1
JX946159,JN706448,

EF583017,JQ713645,

EF583037,HQ702218

,JN706449,JX416204

,JF421975,JN706444,

DQ005125,EU200793

,EU984103,JN706445

,HQ702229,FJ747625

,HM627553,JF76658

9,JN706453,JX56776

0,JN706465,EF55412

6,JN706451,HQ7022

51,AY787653,JN7064

61,HQ702240,HQ025

973,JN706462,JN706

454,HQ025974,JF766

578,JN706452,HQ67

0639,JN706457,FJ42

3146,JN706460,FJ42

3113,JF766600,JQ86

3309,KC139781,JN70

6464,AB022765,JN70

6459,HQ702207,JF30

4915,EF554104,JX41

6218,JN104619,JN10

4611,JN706450,DQO

05114,EF583033,JN7

06447,AB741649,FJ4

23135,HQ641355,FJ4

23124,HQ670632,JN

706458,GU189551,E

F583041,JX416211,J

N706455,FJ747613,E

F554082,EF554093,H

0641364,JN706456,J

N706446,EF583021,

EF583045,GQ414540

,JX946168,EF554115

,EF583029,JN706463

,JX509935,EF583049

,EF583025,JF304926

Human rotavirus A
NC_011508
vertebrates,human
86
Reoviridae,Rotavirus,Rotavirus A
seg. 3
EF554117,JN706489,

AY277919,JX946170,

JF766602,FJ747627,

JF421977,EF554095,

AY277918,EF583035,

JF766591,HQ670634,

AB022767,AY277914

,JQ863311,JX416213

,EF554084,HQ64135

7,JN104613,AY27791

7,EF583015,DQ0051

12,JN706509,HQ670

641,KC139783,JN706

494,HQ641366,FJ423

115,JN706503,JX946

161,DQ005123,JN70

6491,JN706502,HQ0

25977,FJ423126,EF5

83039,EF583031,JN7

06488,EU984105,EF

583023,JN706493,FJ

747615,AY277915,JN

706496,JN706499,EF

554106,JN706504,EF

583019,JF304917,HQ

025978,JN706506,JN

104621,JN706490,EF

583047,AY277920,EF

583051,AB733135,EF

583027,JF766580,JX

567762,AY277916,EF

583043,JN706501,JX

416220,AY267335,EF

554128,GQ414542,H

M627555,JQ713647,J

N706498,JF304928,J

X416206,EU200795,J

N706500,JN706492,J

N706497,JX509937,F

J423137,GU189553,J

N706495,JN706507,J

N706508,FJ423148,A

B741651,AY787654,J

N706505

Human rotavirus A
NC_011509
vertebrates,human
315
Reoviridae,Rotavirus,Rotavirus A
seg. 6
JQ818154,JN706538,

GU390418,HM62755

7,JF421979,GU39045

2,EU372724,JQ2300

99,JQ230080,FJ1521

09,JQ043298,GU390

443,EU372726,JX307

599,JN706544,HQ73

8601,JQ230065,FJ68

5614,EU372746,GU3

90414,EF426129,JQ2

30082,JQ230070,EF4

26136,GU390438,AY

601554,EF583040,E

U556221,EU372748,

EF426139,HQ445977

,GU390425,KC14992

6,FJ747617,JF30491

9,EU372745,GU3904

53,HQ445975,JQ230

083,JN706535,EF583

016,JQ230066,HQ61

1018,AY787645,AY6

01552,AY601550,JX5

67763,JQ863313,EU

372732,JQ230090,K

C890877,EU984108,

FJ152120,GU390448,

AF260931,JQ818153,

GU390432,EF426137

,GU390440,JX94617

2,EF426124,EU3727

25,EU372738,HQ611

009,JX307600,JQ230

086,JQ230101,AF531

912,HQ611032,JN70

6546,GU390423,HQ6

10999,HQ611022,JQ

818168,EF583028,H

0738589,HQ611003,

AY601551,HQ611006

,EU679384,JQ23006

4,JQ230068,GU3904

50,EF426122,JQ0432

94,GU390416,JQ230

072,JQ230061,JQ230

089,GU390445,EF42

6126,FJ423118,GU39

0422,JQ230081,HQ6

11014,HQ611021,JN

104614,EU372743,E

U679385,AB022768,J

0818166,JN706547,J

0230093,DQ873675,

EF426120,EF426130,

JN706532,HQ738584

,JQ230088,DQ92380

0,EU372730,GU3904

42,EU372727,JQ230

078,HQ738586,HQ61

1001,EU805774,JF76

6593,JQ230063,DQO

05110,JQ230092,GU

390415,EU372750,H

0738598,GU390426,

HQ611005,JQ230100

,EU372747,JX509939

,HQ738597,EF42613

8,GU390441,EF4261

28,EF426119,JN7065

43,HQ611013,EF583

036,JQ230102,JQ230

097,JQ087427,HQ61

1020,JQ230077,GU3

90417,EF426131,HQ

611011,EF426140,JQ

230094,JX416207,H

0611017,GU390430,

JQ043296,JQ230059,

JQ230084,HQ738595

,JF766604,KC890878

,JQ818151,HQ61102

7,EU372736,HQ7385

99,HQ611019,HQ611

016,HQ738591,EU67

9388,EU372742,AF3

09652,EU372731,JN7

06550,JN706536,JF3

04930,EU372728,GU

390427,EU679383,A

Y601549,JQ230095,J

N706542,HQ445978,

EU372733,HQ611033

,JN706551,JQ230085

,EF426125,HQ61100

0,DQ005121,JQ2300

79,JN706548,HQ738

593,HQ611008,JQ23

0073,JQ230071,GU3

90454,GU390429,EF

426134,HQ611010,G

U390449,JQ230062,J

N706533,JQ818152,

EF583048,JX946162,

EU372739,JN706545,

JQ818155,HQ611007

,HQ738594,HQ61099

8,JQ230060,HQ7385

88,EF426132,AB7416

53,KC139784,HQ738

596,GU390433,HQ64

1358,DQ923796,EF5

54108,EU372737,GU

390444,JQ230069,G

U390460,X94617,GQ

414544,FJ423140,EU

372741,GU390431,E

F426135,GU390447,J

0230087,JN706552,J

F766582,GU390428,J

0230096,JQ230074,J

N706541,EF426121,

HQ611024,EF554119

,GU390434,EU20079

7,EU372740,HQ7385

92,HQ738585,EF583

044,HQ611002,AY60

1553,GU390455,JN7

06534,EU372729,KC

890881,EF583052,E

U372749,U04741,JN

104622,JQ087449,E

U372734,JQ230098,

EU372735,EU679386

,EF583032,EF426127

,GU390446,HQ64136

7,JN706553,FJ74762

9,GU390436,FJ42312

9,JN706540,HQ6110

30,JX307601,GU390

458,HQ611012,JQ23

0091,KC890879,JN70

6549,JQ230067,JQ23

0075,EF554086,EF42

6123,EU791923,EF5

83024,EU556222,EU

556223,FJ152131,JN

706537,JQ043293,H

0738600,GU390457,

EF554130,KC890876

,HQ738590,HQ61100

4,JX307602,EF55409

7,AF531913,GU3904

56,X94618,GU59251

5,FJ423150,HQ61101

5,JQ087438,EU3727

44,EF583020,GU390

435,GU390459,JQ81

8167,JX416221,EF42

6133,EU679387,KC8

90880,JQ230058,HO

445976,GU390437,E

U330646,JN706539,J

0230076

Human rotavirus A
NC_011510
vertebrates,human
68
Reoviridae,Rotavirus,Rotavirus A
seg. 4
AY787644,FJ423116,

EF672577,KC139780

,EU679398,HQ44596

7,EF554118,EF67261

2,HM627556,HQ4459

69,JF766581,EF5541

29,L33895,EU679399

,L19712,JF421978,D

0887060,JF766592,E

U679395,D14032,GQ

398013,EF672591,G

U320751,FJ435210,E

F672584,JQ863312,U

16299,EF672570,FJ4

23127,EU984107,D3

8054,EF554096,JF76

6603,GU189554,M60

600,L34161,GQ4145

43,FJ747628,GQ453

422,AB741652,FJ435

205,AF531909,FJ423

138,FJ423149,EF672

563,M58292,HM6275

45,D38052,EF672605

,GQ452950,EF67255

6,EF554107,EU8057

73,FJ747616,EF6725

98,EU984106,HQ445

970,AF260932,EF672

619,U07753,JN70651

0,GQ452951,EU6793

96,AB077766,HQ738

572,AF523677,EU67

9397,EU679400

Human rotavirus A
NC_011503
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 9
AY603151

RMC/G60

Human rotavirus A
NC_011503
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 9
AY603152

RMC/G66

Human rotavirus A
NC_011503
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 9
AY603150

RMC/G7

Human rotavirus A
NC_011503
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 9
AY603153

RMC437

Human rotavirus A RMC61
NC_011503
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 9
AY603149

Human rotavirus A strain
NC_011504
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg.
DQ288660

CMH222

10

Human rotavirus A strain
NC_011509
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 6
DQ288659

CMH222

Human rotavirus A strain
NC_011505
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg.
AF373605

RMC100

11

Human rotavirus AU-1
NC_011510
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 4
D10970

Human rotavirus B
NC_021541
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus B
seg. 1
EU490415

Human rotavirus B
NC_021542
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus B
seg. 9
AY238385

Human rotavirus B
NC_021543
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus B
seg. 4
AY238388

Human rotavirus B
NC_021544
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus B
seg. 6
AY238389

Human rotavirus B
NC_021545
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus B
seg. 2
AY238390

Human rotavirus B
NC_021546
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus B
seg. 5
AY238391

Human rotavirus B
NC_021547
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus B
seg. 7
AY238392

Human rotavirus B
NC_021548
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus B
seg. 8
AY238393

Human rotavirus B
NC_021549
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus B
seg.
AY238394

11

Human rotavirus B
NC_021550
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus B
seg.
AY238384

10

Human rotavirus B
NC_021551
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus B
seg. 3
EU490418

Human rotavirus C
NC_007543
vertebrates,human
3
Reoviridae,Rotavirus,Rotavirus C
seg. 6
AY941780,AY941782

,AY941781

Human rotavirus C
NC_007544
vertebrates,human
3
Reoviridae,Rotavirus,Rotavirus C
seg. 7
AY820180,AY770977

,AY820181

Human rotavirus C
NC_007545
vertebrates,human
4
Reoviridae,Rotavirus,Rotavirus C
seg. 9
AY781283,JN969078,

AY781284,AY770979

Human rotavirus C
NC_007569
vertebrates,human
3
Reoviridae,Rotavirus,Rotavirus C
seg.
AY803727,AY803729

10
,AY770978

Human rotavirus C
NC_007570
vertebrates,human
22
Reoviridae,Rotavirus,Rotavirus C
seg. 5
AB499614,AM118019

,AF325806,AB008672

,AB533509,GU59251

9,AY795898,AY7709

80,AB533508,AF3258

05,AB533510,AB648

915,M94156,AM1180

20,AB533511,M9415

5,EF641110,AY78657

1,AB533512,AB5335

13,AY786570,AM118

018

Human rotavirus C
NC_007571
vertebrates,human
44
Reoviridae,Rotavirus,Rotavirus C
seg. 8
AB086963,AF225563,

AF225557,AB086968,

AB086962,AF225555,

AY803724,AF225553,

AF225554,AF225561,

D87543,AB004250,A

F225552,AF225558,A

B648916,AM118022,

AF225556,AB086969,

AF225560,AF323982,

AB281654,AB281655

,AY803726,AF225559

,AM118021,AB08696

6,M61100,AY392446,

AY803725,AF323979,

AB499615,AB086964

,AB281652,AB00867

1,AB086967,AF12047

8,EF641111,D87544,

AB281651,AB281653

,AY392447,AF225562

,AM118023,AB08696

5

Human rotavirus C
NC_007572
vertebrates,human
20
Reoviridae,Rotavirus,Rotavirus C
seg. 3
AY395070,AB533526

,AB008670,AM11802

5,AB533523,AB6489

17,AB533524,X79441

,AB533521,AF323981

,AY795897,AM11802

4,AY795896,AF32398

0,AY795895,AY3950

69,AB533525,AB499

613,AB533522,AM11

8026

Human rotavirus C
NC_007573
vertebrates,human
6
Reoviridae,Rotavirus,Rotavirus C
seg.
AB499612,AB008673

11
,AY941784,D88353,A

Y770976,AY941783

Human rotavirus G10P11
NC_011504
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg.
AY527229

10

Human rotavirus G10P[8]
NC_011502
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 8
AB714265

Human rotavirus G10P[8]
NC_011506
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 2
AB714259

Human rotavirus G10P[8]
NC_011508
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 3
AB714260

Human rotavirus G12P[6]
NC_011510
vertebrates,human
3
Reoviridae,Rotavirus,Rotavirus A
seg. 4
EU839947,EU839946

,EU839948

Human rotavirus G1P6
NC_011504
vertebrates,human
22
Reoviridae,Rotavirus,Rotavirus A
seg.
AF173181,AF173180,

10
AF173182,AF173194,

AF173183,AF173184,

AF173191,AF173192,

AF173179,AF173199,

AF173187,AF173197,

AF173188,AF173198,

AF173193,AF173186,

AF173189,AF173190,

AF173195,AF173196,

AF173200,AF173185

Human rotavirus G1P8
NC_011504
vertebrates,human
7
Reoviridae,Rotavirus,Rotavirus A
seg.
AF173207,AF173205,

10
AF173201,AF173202,

AF173203,AF173204,

AF173206

Human rotavirus G1P[8]
NC_011503
vertebrates,human
34
Reoviridae,Rotavirus,Rotavirus A
seg. 9
GU358423,HQ65087

6,HQ650871,GU3772

04,HQ650886,GU377

203,GU358420,GU35

8446,GU358438,HQ6

50872,GU377196,HQ

650882,GU358422,H

0650884,GU358441,

HQ650878,GU35844

0,GU377198,GU3584

21,GU377201,HQ650

881,GU358436,GU35

8429,GU377200,GU3

58443,GU358444,GU

358442,HQ650879,G

U358437,HQ650877,

GU358445,GU35843

9,GU377205,HQ6508

83

Human rotavirus G1P[8]
NC_011510
vertebrates,human
4
Reoviridae,Rotavirus,Rotavirus A
seg. 4
EU839957,EU839956

,EU839955,EU83995

8

Human rotavirus G2P4
NC_011504
vertebrates,human
9
Reoviridae,Rotavirus,Rotavirus A
seg.
AF174298,AF174299,

10
AF174304,AF174300,

AF174301,AF174305,

AF174302,AY527228,

AF174303

Human rotavirus G2P[4]
NC_011510
vertebrates,human
4
Reoviridae,Rotavirus,Rotavirus A
seg. 4
EU839950,EU839949

,EU839951,EU83994

5

Human rotavirus G2P[8]
NC_011510
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 4
EU839954

Human rotavirus G3P[6]
NC_011504
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg.
EU734177

10

Human rotavirus G3P[8]
NC_011504
vertebrates,human
5
Reoviridae,Rotavirus,Rotavirus A
seg.
AF173210,AF173212,

10
AF173209,AF173211,

AF173208

Human rotavirus G4 strain
NC_011503
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 9
X13603

St,Thomas 3

Human rotavirus G4 strain
NC_011504
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg.
U83798

VA70

10

Human rotavirus G4P[8]
NC_011504
vertebrates,human
4
Reoviridae,Rotavirus,Rotavirus A
seg.
AF173214,EF011980,

10
AF173215,AF173213

Human rotavirus G5P[6]
NC_011503
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 9
AB257126

Human rotavirus G9P6
NC_011501
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 7
EU753969

Human rotavirus G9P6
NC_011502
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 8
EU753970

Human rotavirus G9P6
NC_011503
vertebrates,human
9
Reoviridae,Rotavirus,Rotavirus A
seg. 9
AF529871,AF529869,

AF529868,AF529865,

AF529870,AF529872,

AF529867,AF529866,

AF529864

Human rotavirus G9P6
NC_011504
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg.
EU753968

10

Human rotavirus G9P6
NC_011505
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg.
EU753967

11

Human rotavirus G9P[6]
NC_011501
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 7
FJ183359

Human rotavirus G9P[6]
NC_011502
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 8
FJ183361

Human rotavirus G9P[6]
NC_011503
vertebrates,human
5
Reoviridae,Rotavirus,Rotavirus A
seg. 9
FJ183360,AB364381,

AB364371,AB364368

,AB364372

Human rotavirus G9P[6]
NC_011504
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg.
FJ183363

10

Human rotavirus G9P[6]
NC_011505
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg.
FJ183362

11

Human rotavirus G9P[6]
NC_011506
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 2
FJ183354

Human rotavirus G9P[6]
NC_011507
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 1
FJ183353

Human rotavirus G9P[6]
NC_011508
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 3
FJ183355

Human rotavirus G9P[6]
NC_011509
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 6
FJ183358

Human rotavirus G9P[6]
NC_011510
vertebrates,human
3
Reoviridae,Rotavirus,Rotavirus A
seg. 4
FJ183356,EU839952,

EU839953

Human rotavirus G9P[8]
NC_011503
vertebrates,human
11
Reoviridae,Rotavirus,Rotavirus A
seg. 9
AB364378,AB364370

,AB364384,AB36438

3,AB364382,AB3643

77,AB364379,AB364

373,AB364374,AB36

4376,AB364375

Human rotavirus G9P[8]
NC_011510
vertebrates,human
4
Reoviridae,Rotavirus,Rotavirus A
seg. 4
EU839960,EU839961

,EU839962,EU83995

9

Human rotavirus HCR3A
NC_011500
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 5
EU708907

Human rotavirus HCR3A
NC_011501
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 7
EU708908

Human rotavirus HCR3A
NC_011502
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 8
EU708909

Human rotavirus HCR3A
NC_011503
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 9
EU708906

Human rotavirus HCR3A
NC_011504
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg.
EU708910

10

Human rotavirus HCR3A
NC_011505
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg.
EU708911

11

Human rotavirus HCR3A
NC_011506
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 2
EU708902

Human rotavirus HCR3A
NC_011507
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 1
EU708901

Human rotavirus HCR3A
NC_011508
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 3
EU708903

Human rotavirus HCR3A
NC_011509
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 6
EU708905

Human rotavirus HCR3A
NC_011510
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 4
EU708904

Human rotavirus HMGQ35
NC_011510
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 4
AF361438

Human rotavirus II type 1
NC_011510
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 4
D90260

Human rotavirus MP409
NC_011510
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 4
AF143408

Human rotavirus Ro1845
NC_011500
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 5
EU708896

Human rotavirus Ro1845
NC_011501
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 7
EU708897

Human rotavirus Ro1845
NC_011502
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 8
EU708898

Human rotavirus Ro1845
NC_011503
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 9
EU708895

Human rotavirus Ro1845
NC_011504
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg.
EU708899

10

Human rotavirus Ro1845
NC_011505
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg.
EU708900

11

Human rotavirus Ro1845
NC_011506
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 2
EU708891

Human rotavirus Ro1845
NC_011507
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 1
EU708890

Human rotavirus Ro1845
NC_011508
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 3
EU708892

Human rotavirus Ro1845
NC_011509
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 6
EU708894

Human rotavirus Ro1845
NC_011510
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 4
EU708893

Human rotavirus serotype 1
NC_011504
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg.
U59109

strain M37

10

Human rotavirus serotype 2
NC_011504
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg.
U59105

strain 1076

10

Human rotavirus strain
NC_011500
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 5
AF141916

MP409

Human rotavirus strain
NC_011502
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 8
AF141917

MP409

Human rotavirus strain
NC_011503
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 9
AF141918

MP409

Human rotavirus strain
NC_011510
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 4
AF076926

NnB1

Human rotavirus strain
NC_011510
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 4
AF076925

S12/85

IDIR agent
NC_021551
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus B
seg. 3

X16949

lkoma lyssavirus
NC_018629
vertebrates,human
1
Rhabdoviridae, Lyssavirus, I koma lyssavirus
seg. 3
JX193798

Influenza A virus (A/Puerto
NC_002022
vertebrates,human
1
Orthomyxoviridae,Influenzavirus A,Influenza A
seg. 3
V01106

Rico/8/1934(H 1N1))

virus

Influenza A virus (A/Puerto
NC_002016
vertebrates,human
1
Orthomyxoviridae,Influenzavirus A,Influenza A
seg. 7
V01099

Rico/8/34(H 1N1))

virus

Influenza A virus (A/Puerto
NC_002017
vertebrates,human
1
Orthomyxoviridae,Influenzavirus A,Influenza A
seg. 4
V01088

Rico/8/34(H 1N1))

virus

Influenza A virus (A/Puerto
NC_002018
vertebrates,human
1
Orthomyxoviridae,Influenzavirus A,Influenza A
seg. 6
JQ2146

Rico/8/34(H 1N1))

virus

Influenza A virus (A/Puerto
NC_002019
vertebrates,human
1
Orthomyxoviridae,Influenzavirus A,Influenza A
seg. 5
JQ2147

Rico/8/34(H 1N1))

virus

Influenza A virus (A/Puerto
NC_002020
vertebrates,human
1
Orthomyxoviridae,Influenzavirus A,Influenza A
seg. 8
JQ2150

Rico/8/34(H 1N1))

virus

Influenza A virus (A/Puerto
NC_002021
vertebrates,human
1
Orthomyxoviridae,Influenzavirus A,Influenza A
seg. 2
JQ2151

Rico/8/34(H 1N1))

virus

Influenza A virus (A/Puerto
NC_002023
vertebrates,human
1
Orthomyxoviridae,Influenzavirus A,Influenza A
seg. 1
V00603

Rico/8/34(H 1N1))

virus

Influenza B virus
NC_002204
vertebrates,human
1
Orthomyxoviridae,Influenzavirus B,Influenza B
seg.
M14880

virus
RNA 1

Influenza B virus
NC_002205
vertebrates,human
1
Orthomyxoviridae,Influenzavirus B,Influenza B
seg.
AF101982

virus
RNA 2

Influenza B virus
NC_002206
vertebrates,human
1
Orthomyxoviridae,Influenzavirus B,Influenza B
seg.
AF102017

virus
RNA 3

Influenza B virus
NC_002207
vertebrates,human
1
Orthomyxoviridae,Influenzavirus B,Influenza B
seg.
K00423

virus
RNA 4

Influenza B virus
NC_002208
vertebrates,human
1
Orthomyxoviridae,Influenzavirus B,Influenza B
seg.
K01395

virus
RNA 5

Influenza B virus
NC_002209
vertebrates,human
1
Orthomyxoviridae,Influenzavirus B,Influenza B
seg.
JQ2095

virus
RNA 6

Influenza B virus
NC_002210
vertebrates,human
1
Orthomyxoviridae,Influenzavirus B,Influenza B
seg.
JQ2094

virus
RNA 7

Influenza B virus
NC_002211
vertebrates,human
1
Orthomyxoviridae,Influenzavirus B,Influenza B
seg.
JQ2096

virus
RNA 8

Influenza C virus
NC_006306
vertebrates,human
29
Orthomyxoviridae,Influenzavirus C,Influenza C
seg. 7
AB034181,AB034170

virus

,AB034165,AB03417

4,AB034157,DQ0028,

AB034161,AB034169

,AB034173,AB03418

0,AB034168,AB0341

56,AB035367,AB034

179,AB034159,AB03

4166,AB034160,AB0

34172,AB035366,AB

034164,AB034178,A

B034158,AB034163,

AB034176,AB034177

,AB034175,AB03416

2,AB034167,AB0341

71

Influenza C virus
NC_006307
vertebrates,human
2
Orthomyxoviridae,Influenzavirus C,Influenza C
seg. 1
M28061 ,U20228

virus

Influenza C virus
NC_006308
vertebrates,human
1
Orthomyxoviridae,Influenzavirus C,Influenza C
seg. 2
M28060

virus

Influenza C virus
NC_006309
vertebrates,human
1
Orthomyxoviridae,Influenzavirus C,Influenza C
seg. 3
M28062

virus

Influenza C virus
NC_006310
vertebrates,human
14
Orthomyxoviridae, Influenzavirus C, Influenza C
seg. 4
M11643,M11642,M25

virus

363,M11639,M11638,

M11645,K01689,M11

637, M11640,M17868,

M25361,M11644, M11

641,M25362

Influenza C virus
NC_006312
vertebrates,human
2
Orthomyxoviridae,Influenzavirus C,Influenza C
seg. 6
M17700,M22038

virus

Influenza C virus
NC_006312
vertebrates,human
1
Orthomyxoviridae,Influenzavirus C,Influenza C
seg. 6
D16260

(C/Aichi/1/81)

virus

Influenza C virus (C/Ann
NC_006306
vertebrates,human
1
Orthomyxoviridae,Influenzavirus C,Influenza C
seg. 7
AB283001

Arbor/1/50)

virus

Influenza C virus (C/Ann
NC_006307
vertebrates,human
1
Orthomyxoviridae,Influenzavirus C,Influenza C
seg. 1
AB126191

Arbor/1/50)

virus

Influenza C virus (C/Ann
NC_006308
vertebrates,human
1
Orthomyxoviridae,Influenzavirus C,Influenza C
seg. 2
AB126192

Arbor/1/50)

virus

Influenza C virus (C/Ann
NC_006309
vertebrates,human
1
Orthomyxoviridae,Influenzavirus C,Influenza C
seg. 3
AB126193

Arbor/1/50)

virus

Influenza C virus (C/Ann
NC_006310
vertebrates,human
1
Orthomyxoviridae,Influenzavirus C,Influenza C
seg. 4
AB126194

Arbor/1/50)

virus

Influenza C virus (C/Ann
NC_006311
vertebrates,human
1
Orthomyxoviridae,Influenzavirus C,Influenza C
seg. 5
AB126195

Arbor/1/50)

virus

Influenza C virus (C/Ann
NC_006312
vertebrates,human
1
Orthomyxoviridae,Influenzavirus C,Influenza C
seg. 6
AB126196

Arbor/1/50)

virus

Influenza C virus
NC_006310
vertebrates,human
1
Orthomyxoviridae,Influenzavirus C,Influenza C
seg. 4
D63469

(C/Aomori/74)

virus

Influenza C virus
NC_006312
vertebrates,human
1
Orthomyxoviridae,Influenzavirus C,Influenza C
seg. 6
D16259

(C/Aomori/74)

virus

Influenza C virus
NC_006306
vertebrates,human
2
Orthomyxoviridae,Influenzavirus C,Influenza C
seg. 7
M10087,AB099625

(C/California/78)

virus

Influenza C virus
NC_006312
vertebrates,human
1
Orthomyxoviridae,Influenzavirus C,Influenza C
seg. 6
AB000608

(C/California/78)

virus

Influenza C virus
NC_006312
vertebrates,human
1
Orthomyxoviridae,Influenzavirus C,Influenza C
seg. 6
AB000725

(C/England/83)

virus

Influenza C virus
NC_006306
vertebrates,human
1
Orthomyxoviridae,Influenzavirus C,Influenza C
seg. 7
AB099627

(C/Greece/79)

virus

Influenza C virus
NC_006306
vertebrates,human
1
Orthomyxoviridae,Influenzavirus C,Influenza C
seg. 7
AB099619

(C/Hiroshima/246/2000)

virus

Influenza C virus
NC_006306
vertebrates,human
1
Orthomyxoviridae,Influenzavirus C,Influenza C
seg. 7
AB099620

(C/Hiroshima/247/2000)

virus

Influenza C virus
NC_006306
vertebrates,human
1
Orthomyxoviridae,Influenzavirus C,Influenza C
seg. 7
AB099621

(C/Hiroshima/248/2000)

virus

Influenza C virus
NC_006306
vertebrates,human
1
Orthomyxoviridae,Influenzavirus C,Influenza C
seg. 7
AB099618

(C/Hiroshima/249/2000)

virus

Influenza C virus
NC_006306
vertebrates,human
1
Orthomyxoviridae,Influenzavirus C,Influenza C
seg. 7
AB099622

(C/Hiroshima/250/2000)

virus

Influenza C virus
NC_006306
vertebrates,human
1
Orthomyxoviridae,Influenzavirus C,Influenza C
seg. 7
AB099623

(C/Hiroshima/251/2000)

virus

Influenza C virus
NC_006306
vertebrates,human
1
Orthomyxoviridae,Influenzavirus C,Influenza C
seg. 7
AB099617

(C/Hiroshima/252/99)

virus

Influenza C virus
NC_006306
vertebrates,human
1
Orthomyxoviridae,Influenzavirus C,Influenza C
seg. 7
AB099616

(C/Hiroshima/290/99)

virus

Influenza C virus
NC_006312
vertebrates,human
1
Orthomyxoviridae,Influenzavirus C,Influenza C
seg. 6
AB000610

(C/Hyogo/1/83)

virus

Influenza C virus
NC_006312
vertebrates,human
1
Orthomyxoviridae,Influenzavirus C,Influenza C
seg. 6
AB000604

(C/Johannesburg/66)

virus

Influenza C virus
NC_006310
vertebrates,human
1
Orthomyxoviridae,Influenzavirus C,Influenza C
seg. 4
D63470

(C/Kanagawa/1/76)

virus

Influenza C virus
NC_006312
vertebrates,human
1
Orthomyxoviridae,Influenzavirus C,Influenza C
seg. 6
AB000606

(C/Kanagawa/1/76)

virus

Influenza C virus
NC_006306
vertebrates,human
1
Orthomyxoviridae,Influenzavirus C,Influenza C
seg. 7
AB099626

(C/Kansas/1/79)

virus

Influenza C virus
NC_006310
vertebrates,human
1
Orthomyxoviridae,Influenzavirus C,Influenza C
seg. 4
D63472

(C/Kyoto/1/79)

virus

Influenza C virus
NC_006312
vertebrates,human
1
Orthomyxoviridae,Influenzavirus C,Influenza C
seg. 6
AB000609

(C/Kyoto/1/79)

virus

Influenza C virus
NC_006312
vertebrates,human
1
Orthomyxoviridae,Influenzavirus C,Influenza C
seg. 6
AB000724

(C/Kyoto/41/82)

virus

Influenza C virus
NC_006312
vertebrates,human
1
Orthomyxoviridae,Influenzavirus C,Influenza C
seg. 6
AB000720

(C/Mississippi/80)

virus

Influenza C virus
NC_006306
vertebrates,human
1
Orthomyxoviridae,Influenzavirus C,Influenza C
seg. 7
AB086790

(C/Miyagi/1/93)

virus

Influenza C virus
NC_006306
vertebrates,human
1
Orthomyxoviridae,Influenzavirus C,Influenza C
seg. 7
AB086797

(C/Miyagi/1/94)

virus

Influenza C virus
NC_006306
vertebrates,human
1
Orthomyxoviridae,Influenzavirus C,Influenza C
seg. 7
AB086806

(C/Miyagi/1/97)

virus

Influenza C virus
NC_006306
vertebrates,human
1
Orthomyxoviridae,Influenzavirus C,Influenza C
seg. 7
AB086809

(C/Miyagi/1/99)

virus

Influenza C virus
NC_006306
vertebrates,human
1
Orthomyxoviridae,Influenzavirus C,Influenza C
seg. 7
AB099609

(C/Miyagi/2/2000)

virus

Influenza C virus
NC_006306
vertebrates,human
1
Orthomyxoviridae,Influenzavirus C,Influenza C
seg. 7
AB086789

(C/Miyagi/2/92)

virus

Influenza C virus
NC_006306
vertebrates,human
1
Orthomyxoviridae,Influenzavirus C,Influenza C
seg. 7
AB086791

(C/Miyagi/2/93)

virus

Influenza C virus
NC_006306
vertebrates,human
1
Orthomyxoviridae,Influenzavirus C,Influenza C
seg. 7
AB086798

(C/Miyagi/2/94)

virus

Influenza C virus
NC_006306
vertebrates,human
1
Orthomyxoviridae,Influenzavirus C,Influenza C
seg. 7
AB086800

(C/Miyagi/2/96)

virus

Influenza C virus
NC_006306
vertebrates,human
1
Orthomyxoviridae,Influenzavirus C,Influenza C
seg. 7
AB086807

(C/Miyagi/2/98)

virus

Influenza C virus
NC_006306
vertebrates,human
1
Orthomyxoviridae,Influenzavirus C,Influenza C
seg. 7
AB099610

(C/Miyagi/3/2000)

virus

Influenza C virus
NC_006306
vertebrates,human
1
Orthomyxoviridae,Influenzavirus C,Influenza C
seg. 7
AB086792

(C/Miyagi/3/93)

virus

Influenza C virus
NC_006306
vertebrates,human
1
Orthomyxoviridae,Influenzavirus C,Influenza C
seg. 7
AB086799

(C/Miyagi/3/94)

virus

Influenza C virus
NC_006306
vertebrates,human
1
Orthomyxoviridae,Influenzavirus C,Influenza C
seg. 7
AB086811

(C/Miyagi/3/99)

virus

Influenza C virus
NC_006306
vertebrates,human
1
Orthomyxoviridae,Influenzavirus C,Influenza C
seg. 7
AB099611

(C/Miyagi/4/2000)

virus

Influenza C virus
NC_006306
vertebrates,human
1
Orthomyxoviridae,Influenzavirus C,Influenza C
seg. 7
AB086793

(C/Miyagi/4/93)

virus

Influenza C virus
NC_006306
vertebrates,human
1
Orthomyxoviridae,Influenzavirus C,Influenza C
seg. 7
AB086801

(C/Miyagi/4/96)

virus

Influenza C virus
NC_006306
vertebrates,human
1
Orthomyxoviridae,Influenzavirus C,Influenza C
seg. 7
AB086808

(C/Miyagi/4/98)

virus

Influenza C virus
NC_006306
vertebrates,human
1
Orthomyxoviridae,Influenzavirus C,Influenza C
seg. 7
AB099612

(C/Miyagi/5/2000)

virus

Influenza C virus
NC_006306
vertebrates,human
1
Orthomyxoviridae,Influenzavirus C,Influenza C
seg. 7
AB086794

(C/Miyagi/5/93)

virus

Influenza C virus
NC_006306
vertebrates,human
1
Orthomyxoviridae,Influenzavirus C,Influenza C
seg. 7
AB086795

(C/Miyagi/6/93)

virus

Influenza C virus
NC_006306
vertebrates,human
1
Orthomyxoviridae,Influenzavirus C,Influenza C
seg. 7
AB086802

(C/Miyagi/6/96)

virus

Influenza C virus
NC_006306
vertebrates,human
1
Orthomyxoviridae,Influenzavirus C,Influenza C
seg. 7
AB086796

(C/Miyagi/7/93)

virus

Influenza C virus
NC_006306
vertebrates,human
1
Orthomyxoviridae,Influenzavirus C,Influenza C
seg. 7
AB086803

(C/Miyagi/7/96)

virus

Influenza C virus
NC_006310
vertebrates,human
1
Orthomyxoviridae,Influenzavirus C,Influenza C
seg. 4
D63471

(C/Miyagi/77)

virus

Influenza C virus
NC_006312
vertebrates,human
1
Orthomyxoviridae,Influenzavirus C,Influenza C
seg. 6
AB000607

(C/Miyagi/77)

virus

Influenza C virus
NC_006306
vertebrates,human
1
Orthomyxoviridae,Influenzavirus C,Influenza C
seg. 7
AB086804

(C/Miyagi/8/96)

virus

Influenza C virus
NC_006312
vertebrates,human
1
Orthomyxoviridae,Influenzavirus C,Influenza C
seg. 6
AB000614

(C/Miyagi/9/91)

virus

Influenza C virus
NC_006306
vertebrates,human
1
Orthomyxoviridae,Influenzavirus C,Influenza C
seg. 7
AB086805

(C/Miyagi/9/96)

virus

Influenza C virus
NC_006312
vertebrates,human
1
Orthomyxoviridae,Influenzavirus C,Influenza C
seg. 6
AB000726

(C/Nara/1/85)

virus

Influenza C virus
NC_006310
vertebrates,human
1
Orthomyxoviridae,Influenzavirus C,Influenza C
seg. 4
D30697

(C/Nara/2/85)

virus

Influenza C virus
NC_006312
vertebrates,human
1
Orthomyxoviridae,Influenzavirus C,Influenza C
seg. 6
AB000727

(C/Nara/2/85)

virus

Influenza C virus
NC_006312
vertebrates,human
1
Orthomyxoviridae,Influenzavirus C,Influenza C
seg. 6
AB000723

(C/Nara/82)

virus

Influenza C virus
NC_006306
vertebrates,human
1
Orthomyxoviridae,Influenzavirus C,Influenza C
seg. 7
AB099624

(C/NewJersey/76)

virus

Influenza C virus
NC_006306
vertebrates,human
1
Orthomyxoviridae,Influenzavirus C,Influenza C
seg. 7
AB099613

(C/Saitama/1/2000)

virus

Influenza C virus
NC_006306
vertebrates,human
1
Orthomyxoviridae,Influenzavirus C,Influenza C
seg. 7
AB099614

(C/Saitama/2/2000)

virus

Influenza C virus
NC_006306
vertebrates,human
1
Orthomyxoviridae,Influenzavirus C,Influenza C
seg. 7
AB099615

(C/Saitama/3/2000)

virus

Influenza C virus
NC_006310
vertebrates,human
1
Orthomyxoviridae,Influenzavirus C,Influenza C
seg. 4
D63468

(C/Sapporo/71)

virus

Influenza C virus
NC_006312
vertebrates,human
1
Orthomyxoviridae,Influenzavirus C,Influenza C
seg. 6
AB000605

(C/Sapporo/71)

virus

Influenza C virus
NC_006306
vertebrates,human
1
Orthomyxoviridae,Influenzavirus C,Influenza C
seg. 7
AB086788

(C/Shizuoka/79)

virus

Influenza C virus
NC_006312
vertebrates,human
1
Orthomyxoviridae,Influenzavirus C,Influenza C
seg. 6
AB000611

(C/Yamagata/1/86)

virus

Influenza C virus
NC_006306
vertebrates,human
1
Orthomyxoviridae,Influenzavirus C,Influenza C
seg. 7
AB002469

(C/Yamagata/1/86)

virus

Influenza C virus
NC_006312
vertebrates,human
1
Orthomyxoviridae,Influenzavirus C,Influenza C
seg. 6
D16261

(C/Yamagata/1/86)

virus

Influenza C virus
NC_006312
vertebrates,human
1
Orthomyxoviridae,Influenzavirus C,Influenza C
seg. 6
AB000613

(C/Yamagata/10/89)

virus

Influenza C virus
NC_006306
vertebrates,human
1
Orthomyxoviridae,Influenzavirus C,Influenza C
seg. 7
AB064445

(C/Yamagata/13/98)

virus

Influenza C virus
NC_006306
vertebrates,human
1
Orthomyxoviridae,Influenzavirus C,Influenza C
seg. 7
AB099605

(C/Yamagata/2/2000)

virus

Influenza C virus
NC_006306
vertebrates,human
1
Orthomyxoviridae,Influenzavirus C,Influenza C
seg. 7
AB064443

(C/Yamagata/2/98)

virus

Influenza C virus
NC_006306
vertebrates,human
1
Orthomyxoviridae,Influenzavirus C,Influenza C
seg. 7
AB099603

(C/Yamagata/2/99)

virus

Influenza C virus
NC_006306
vertebrates,human
1
Orthomyxoviridae,Influenzavirus C,Influenza C
seg. 7
AB064442

(C/Yamagata/20/96)

virus

Influenza C virus
NC_006312
vertebrates,human
1
Orthomyxoviridae,Influenzavirus C,Influenza C
seg. 6
AB000721

(C/Yamagata/26/81)

virus

Influenza C virus
NC_006306
vertebrates,human
1
Orthomyxoviridae,Influenzavirus C,Influenza C
seg. 7
AB099606

(C/Yamagata/3/2000)

virus

Influenza C virus
NC_006310
vertebrates,human
1
Orthomyxoviridae,Influenzavirus C,Influenza C
seg. 4
D63473

(C/Yamagata/3/86)

virus

Influenza C virus
NC_006306
vertebrates,human
1
Orthomyxoviridae,Influenzavirus C,Influenza C
seg. 7
AB064439

(C/Yamagata/3/96)

virus

Influenza C virus
NC_006310
vertebrates,human
1
Orthomyxoviridae,Influenzavirus C,Influenza C
seg. 4
D63503

(C/Yamagata/4/86)

virus

Influenza C virus
NC_006306
vertebrates,human
1
Orthomyxoviridae,Influenzavirus C,Influenza C
seg. 7
AB099607

(C/Yamagata/6/2000)

virus

Influenza C virus
NC_006306
vertebrates,human
1
Orthomyxoviridae,Influenzavirus C,Influenza C
seg. 7
AB064444

(C/Yamagata/6/98)

virus

Influenza C virus
NC_006310
vertebrates,human
1
Orthomyxoviridae,Influenzavirus C,Influenza C
seg. 4
D63467

(C/Yamagata/64)

virus

Influenza C virus
NC_006312
vertebrates,human
1
Orthomyxoviridae,Influenzavirus C,Influenza C
seg. 6
D16258

(C/Yamagata/64)

virus

Influenza C virus
NC_006306
vertebrates,human
1
Orthomyxoviridae,Influenzavirus C,Influenza C
seg. 7
AB099608

(C/Yamagata/8/2000)

virus

Influenza C virus
NC_006312
vertebrates,human
1
Orthomyxoviridae,Influenzavirus C,Influenza C
seg. 6
AB000612

(C/Yamagata/8/86)

virus

Influenza C virus
NC_006306
vertebrates,human
1
Orthomyxoviridae,Influenzavirus C,Influenza C
seg. 7
AB064440

(C/Yamagata/8/96)

virus

Influenza C virus
NC_006306
vertebrates,human
1
Orthomyxoviridae,Influenzavirus C,Influenza C
seg. 7
AB099604

(C/Yamagata/9/2000)

virus

Influenza C virus
NC_006312
vertebrates,human
1
Orthomyxoviridae,Influenzavirus C,Influenza C
seg. 6
AB000728

(C/Yamagata/9/86)

virus

Influenza C virus
NC_006306
vertebrates,human
1
Orthomyxoviridae,Influenzavirus C,Influenza C
seg. 7
AB064441

(C/Yamagata/9/96)

virus

Influenza C virus
NC_006312
vertebrates,human
1
Orthomyxoviridae,Influenzavirus C,Influenza C
seg. 6
AB000722

(C/pig/Beijing/115/81)

virus

Influenza C virus (STRAIN
NC_006307
vertebrates,human
1
Orthomyxoviridae,Influenzavirus C,Influenza C
seg. 1
X55992

C/BERLIN/1/85)

virus

Influenza C virus (STRAIN
NC_006312
vertebrates,human
1
Orthomyxoviridae,Influenzavirus C,Influenza C
seg. 6
D26546

C/TAYLOR/1233/47)

virus

Ippy virus
NC_007905
vertebrates,human
1
Arenaviridae,Arenavirus,Ippy virus
seg. S
DQ328877

Ippy virus
NC_007906
vertebrates,human
1
Arenaviridae,Arenavirus,Ippy virus
seg. L
DQ328878

Irkut virus
NC_020809
vertebrates,human
2
Rhabdoviridae,Lyssavirus,Irkut virus
—
JX442979,EF614260

Italian lapine rotavirus
NC_011500
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 5
DQ205225

30/96

Italian lapine rotavirus
NC_011501
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 7
DQ205227

30/96

Italian lapine rotavirus
NC_011502
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 8
DQ205228

30/96

Italian lapine rotavirus
NC_011503
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 9
DQ205229

30/96

Italian lapine rotavirus
NC_011504
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg.
DQ205230

30/96

10

Italian lapine rotavirus
NC_011505
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg.
DQ205231

30/96

11

Italian lapine rotavirus
NC_011506
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 2
DQ205222

30/96

Italian lapine rotavirus
NC_011507
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 1
DQ205221

30/96

Italian lapine rotavirus
NC_011508
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 3
DQ205223

30/96

Italian lapine rotavirus
NC_011509
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 6
DQ205226

30/96

Italian lapine rotavirus
NC_011510
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 4
DQ205224

30/96

J-virus
NC_007454
vertebrates,human
1
Paramyxoviridae, J-virus
—
AY900001

JC polyomavirus
NC_001699
vertebrates,human
592
Polyomaviridae,Polyomavirus,JC
—
AB262401,JF424911,

polyomavirus

AB092584,AB074591

,AB127013,AB11312

1,AY366359,AB1182

33,AB127350,AB126

983,AB077869,AB18

3152,AB127346,AY5

36242,AB077859,JF4

24922,AB092582,AB

081007,JF424869,JF

424874,JF424877,AF

363833,AB081612,A

B127006,AB077864,J

F424835,AB048553,A

Y536239,JF424859,A

B362360,AB118652,

AB118234,JF424952,

JF425504,JF424875,

JF424837,AB372036,

AB262397,AY121908

,AB113142,AY38637

7,AB038254,JF42495

8,AB113137,JF42548

9,AB048568,AF28161

7,AY121913,AB1989

46,JF425556,AB0382

52,AB103404,JF4248

85,JF424954,AB2209

41,AB048580,JF4255

51,AB081654,AB113

131,AB077866,AB12

7011,AB077879,JF42

4909,AB126991,AB2

20940,AB081018,AB

113135,AF396430,AF

300964,AB074581,A

B118657,AB198940,

AB074588,AY382187

,AB048572,AB04857

6,AB081608,AB3623

63,AB127023,JF4249

42,JF424855,JF4249

08,AB048569,JF4248

43,AB103421,AB198

947,JF424880,AY121

914,JQ237146,AF363

834,AB048574,JF425

494,AB362351,AB26

2410,AY386376,AB1

27343,AF396435,AB0

92587,AB081604,JF4

24857,AB185020,AF2

81624,JF424923,JF4

25493,JF424939,AB0

81022,AB081013,AB

092579,JF424860,AB

081602,AB103387,A

B262399,JF424894,A

B048561,AB077873,

AB127026,JF424936,

AB262413,JF424864,

AF300959,AB198944,

AB262402,AB081030

,AB103418,AB26241

2,AB081027,JF42487

6,AB048566,JF42490

0,AB103411,AF00435

0,AB081603,AB1273

42,AF396429,AB1186

53,AB127344,AB118

651,AB113123,AB08

1016,AB038253,AB0

77863,JF424917,AB0

81005,JF425498,AF2

81625,AB198949,JF4

24863,JF424951,JF4

24886,AB077874,JF4

25553,AY536241,JQ8

23124,AB118231,AF3

00963,JF424926,JF4

24960,JF424910,AB1

03419,AY378084,JF4

24845,AB081015,AB

048577,AB127347,A

B198942,AB127352,J

F424851,JF424919,A

B126994,AB113118,J

F424870,AB081021,A

B126984,AF300953,J

F424883,AB081024,A

B127348,JF424892,J

F424930,AB113139,A

B262403,AB126993,

AB127003,JF424918,

JF424941,AB127002,

AF363832,AB127025,

AB126982,JF425490,

AB103409,AB048548

,JF424920,AF300955

,AB074577,AB08160

5,AB081020,AY3565

39,AB212954,AB113

138,AB113126,JF424

890,JF424937,JF424

953,JF424949,AB074

585,AB113133,AB04

8554,U61771,JF4249

28,JF424938,JF4248

61,AB048557,AB212

953,AB081008,AB12

7345,AB262404,AY3

42299,JF424878,AB2

62405,AF396428,AB0

74576,AB113143,JX2

73163,AF300951,AB1

27000,AY536240,AB

262408,AB118654,AF

281626,JF424856,AB

048558,U73501,AB04

8565,AB362366,JF42

4850,AF281623,AB12

7024,AB081012,AB1

18656,JF424962,JF4

25499,AB126998,JF4

24933,AF396433,AB3

62356,AB081006,AB

074582,AB081613,A

B074583,AB262396,

AB092583,AF300947,

AF300952,AB198943,

AB081601,AY386373

,AB081023,AB12701

8,AB198953,AB0778

75,JF425501,AB1273

51,AB126996,AB127

016,AB118235,AB09

2578,AB077860,JF42

4848,AB048575,JF42

4873,AB220943,AY3

76830,AB077872,DQ

875212,AF300954,AB

048582,JF424853,JF

425491,AB103406,JF

424893,JF424913,AY

376831,AB103405,A

B077861,AF295732,J

F424881,AB127021,J

F424842,AB127001,J

02226,AB077857,AB

362352,AB048571,A

B048547,AB113124,

AB103417,AF004349,

JF424945,AB198945,

JF424897,AB126988,

AB372037,AB048552

,AB074589,JF424961

,AF396432,JF424891

,AB077871,JF424865

,JF424935,AB126981

,JF424879,AB081616

,AF396427,JF424895

,AF300957,AB127007

,AY378086,JF424866

,AB220942,JF424839

,AY378087,AB10342

2,AB081025,AB1131

19,AF300946,AB1132

17,AB103412,AB081

019,AB113122,AF300

960,JF425554,AB077

855,JF424959,AB104

487,AB081614,AB04

8564,AB103415,AB1

13140,AB092585,AB

198952,AB077877,A

B126999,JF424957,A

B362357,AB048560,

AB198954,AB081611

,JF425503,JF424882,

AB113129,JF424905,

JF424871,JF425552,

AB048559,DQ875211

,AB118232,AB07786

7,AB113130,AB1270

22,JF424947,AF3964

24,AB113216,AY121

912,AB048567,AB08

1615,AF300948,AF30

0962,AB362355,AY3

49147,JF424862,AB0

77865,JF424852,AB1

95639,JF424899,JF4

24906,AB126985,AY

382184,JF424844,JF

424925,JF424903,AB

103414,AB127004,A

B074575,AB103407,

AB118658,AB262406

,AB103413,JF424916

,JF424931,AB081017

,AF363831,JF424944

,AB103403,AB04856

3,AB077862,AF36383

0,JF424898,AB08101

1,AB127015,JF42492

9,JF424927,AB07786

8,AF396434,AB08101

0,AY328376,AB0485

62,AB038251,U73500

,AB103402,AB22093

9,AB126990,AB0810

29,JF424902,AF3009

65,JF424849,AB0816

07,JF424921,JF4248

68,AB077858,JF4249

32,JF424872,JF4249

48,AF396426,AB3623

62,AF396423,JF4249

04,AF281615,AF3009

49,JF424896,AB0816

10,AB127008,AY376

828,JF424950,AB081

009,AF300958,AF295

731,AB262400,AB26

2398,AY376829,AB1

27012,JF425502,AB1

26987,AB081606,AY

386378,AB048570,A

B118655,AB048546,

AY121915,AB113132

,AB372038,AB03825

5,AY378085,JF42488

8,AB081618,AB3623

53,AY536243,AB126

992,AB092580,AB07

7856,JF424924,AB36

2364,JF425492,JF42

4955,AB048556,AB0

77870,AB126989,JF4

24907,AY364314,AF0

30085,AB262411,AB

127349,AB126986,A

Y121909,AY386374,J

F424854,AB074586,J

F424847,AY121907,A

B074579,JF425555,A

B113141,AB077876,

AB103423,AB118659

,AB113144,AB19564

0,AB103420,AB2624

07,JF424901,AF2816

16,JF424858,AB1131

34,JF425500,AY1219

11,AB362359,U73502

,AB081600,AB11313

6,AB113125,AB1131

45,JF424834,AF3964

22,AY382188,AY386

375,AB092581,AB10

3416,JF425488,JF42

4943,AB198948,AB2

12952,AF300967,AB0

48545,AB081617,AB

113120,EU835194,JF

424841,AB048581,A

B074590,JF424956,J

F424912,AB048579,A

B081028,AB048549,

AB074578,AB362361

,JF425495,AB126997

,AB198941,AY38218

5,AB038250,JF42549

7,JF424846,JF42491

4,AB198951,AB1270

10,AF300956,JF4248

67,AB362358,AB262

409,AY382186,AB03

8249,JF424934,AB04

8550,JF424884,AB04

8573,JF424838,AB07

4584,AY373463,AB0

74580,AB127017,AB

048551,AF300945,AB

362365,AB081609,JF

424946,AB113127,A

B113128,AB048555,

AB127353,AB077878

,JF424915,AF295738

,AB092586,AF300950

,JF424889,AB127027

,AY121910,AB12702

0,AB103408,JF42484

0,AB127005,AB3623

54,JF424836,AB0810

26,AB126995,JF4254

96,AF396431,AF3009

61,AB127014,AB103

410,AF300966,AF396

425,AB198950,AB08

1014,JF424887,AB12

7019,AB048578,AB0

74587,AB127009,JF4

24940

Junin virus
NC_005080
vertebrates,human
16
Arenaviridae,Arenavirus,Junin virus
seg. L
JF799977,HQ126698,

JF799978,JF799979,

AY619640,JN801477,

JN714130,FJ805377,

AY216507,JF799980,

AY819707,AY358022

,AY746354,FJ805379

,DQ489718,HQ12670

0

Junin virus
NC_005081
vertebrates,human
30
Arenaviridae,Arenavirus,Junin virus
seg. S
GQ121040,DQ53148

8,DQ854738,DQ8547

30,DQ854739,DQ854

731,HQ126699,JF799

983,AY746353,AY61

9641,DQ854736,DQ8

54737,FJ805378,AY3

58023,FJ969442,DQ8

54733,JF799984,DQ8

54732,JF799981,JF7

99982,JN714129,D10

072,DQ854735,JN80

1476,DQ854734,HQ1

26701,DQ272266,FJ8

05380,DQ531486,JN

200801

K1 polyomavirus
NC_009238
vertebrates,human
6
Polyomaviridae,Polyomavirus,KI polyomavirus
—
EU358767,EF520287

,EF520288,EU35876

6,EF127906,EF52028

9

K1 polyomavirus Stockholm
NC_009238
vertebrates,human
1
Polyomaviridae,Polyomavirus,KI polyomavirus
—
EF127907

350

K1 polyomavirus Stockholm
NC_009238
vertebrates,human
1
Polyomaviridae,Polyomavirus,KI polyomavirus
—
EF127908

380

Lagos bat virus
NC_020807
vertebrates,human
5
Rhabdoviridae,Lyssavirus,Lagos bat virus
—
EU259198,GU170202

,EU293108,EU29311

0,JX901139

Lake Victoria marburgvirus
NC_001608
vertebrates,human
14
Filoviridae,Marburgvirus,Marburg
—
FJ750954,FJ750953,

marburgvirus

Z29337,AY358025,Z1

2132,FJ750956,FJ75

0957,AY430365,FJ75

0959,AY430366,DQ2

17792,FJ750958,FJ7

50955,GQ433353

Lake Victoria
NC_001608
vertebrates,human
8
Filoviridae,Marburgvirus,Marburg
—
DQ447658,DQ44765

marburgvirus-

marburgvirus

9,DQ447654,DQ4476

Angola2005

60,DQ447656,DQ447

653,DQ447657,DQ44

7655

Lake Victoria
NC_001608
vertebrates,human
1
Filoviridae,Marburgvirus,Marburg
—
EF446132

marburgvirus-

Ci67

marburgvirus

Lake Victoria
NC_001608
vertebrates,human
3
Filoviridae,Marburgvirus,Marburg
—
DQ447650,DQ44765

marburgvirus-

marburgvirus

2,DQ44765

DRC1999

1
Filoviridae,Marburgvirus,Marburg
—
JN408064

Leiden

marburgvirus

Lake Victoria
NC_001608
vertebrates,human
2
Filoviridae,Marburgvirus,Marburg
—
DQ447649,EF446131

marburgvirus-Ravn

marburgvirus

Lamb rotavirus
NC_011500
vertebrates,human
2
Reoviridae,Rotavirus,Rotavirus A
seg. 5
HQ834202,FJQ31019

Lamb rotavirus
NC_011501
vertebrates,human
2
Reoviridae,Rotavirus,Rotavirus A
seg. 7
HQ834204,FJQ31020

Lamb rotavirus
NC_011502
vertebrates,human
3
Reoviridae,Rotavirus,Rotavirus A
seg. 8
HQ834203,FJQ31021,

JQ031147

Lamb rotavirus
NC_011503
vertebrates,human
2
Reoviridae,Rotavirus,Rotavirus A
seg. 9
HQ834201,FJQ31029

Lamb rotavirus
NC_011504
vertebrates,human
4
Reoviridae,Rotavirus,Rotavirus A
seg.
HQ834205,JQ031148

10
,FJQ31022,AY219873

Lamb rotavirus
NC_011505
vertebrates,human
4
Reoviridae,Rotavirus,Rotavirus A
seg.
FJQ31023,HQ834206,

11
JQ031151,AY622998

Lamb rotavirus
NC_011506
vertebrates,human
3
Reoviridae,Rotavirus,Rotavirus A
seg. 2
HQ834198,JQ013503

,FJQ31025

Lamb rotavirus
NC_011507
vertebrates,human
3
Reoviridae,Rotavirus,Rotavirus A
seg. 1
JQ013502,HQ834197

,FJQ31024

Lamb rotavirus
NC_011508
vertebrates,human
3
Reoviridae,Rotavirus,Rotavirus A
seg. 3
HQ834207,FJQ31026,

JQ013504

Lamb rotavirus
NC_011509
vertebrates,human
6
Reoviridae,Rotavirus,Rotavirus A
seg. 6
JQ031150,L11602,L1

1595,HQ834200,FJQ3

1028, L11596

Lamb rotavirus
NC_011510
vertebrates,human
3
Reoviridae,Rotavirus,Rotavirus A
seg. 4
HQ834199,FJQ31027,

L11599

Lapine rotavirus
NC_011500
vertebrates,human
4
Reoviridae,Rotavirus,Rotavirus A
seg. 5
AF084549,AF084550,

JQ423897,AF084551

Lapine rotavirus
NC_011501
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 7
JQ423899

Lapine rotavirus
NC_011502
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 8
JQ423898

Lapine rotavirus
NC_011503
vertebrates,human
2
Reoviridae,Rotavirus,Rotavirus A
seg. 9
U62153,JQ423907

Lapine rotavirus
NC_011504
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg.
JQ423900

10

Lapine rotavirus
NC_011505
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg.
JQ423901

11

Lapine rotavirus
NC_011506
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 2
JQ423903

Lapine rotavirus
NC_011507
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 1
JQ423902

Lapine rotavirus
NC_011508
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 3
JQ423904

Lapine rotavirus
NC_011509
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 6
JQ423906

Lapine rotavirus
NC_011510
vertebrates,human
5
Reoviridae,Rotavirus,Rotavirus A
seg. 4
U62150,JQ423905,U

62151,U62152,U6214

9

Lapine rotavirus strain BAP
NC_011504
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg.
AF144796

(wildtype)

10

Lapine rotavirus strain
NC_011504
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg.
AF144795

BAP-2

10

Lapine rotavirus strain C-11
NC_011504
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg.
AF144793

10

Lapine rotavirus strain R-2
NC_011504
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg.
AF144794

10

Lassa virus
NC_004296
vertebrates,human
16
Arenaviridae,Arenavirus,Lassa virus
seg. S
AY628208,X52400,A

F181854,AY628201,A

F333969,AY628207,A

Y628206,HQ688672,

AF246121,AY628205,

AY628203,HQ688673

,AF181853,JQ4324,A

Y179173,FR832711

Lassa virus
NC_004297
vertebrates,human
11
Arenaviridae,Arenavirus,Lassa virus
seg. L
HQ688675,AY179172

,AY628204,U63094,A

Y179171,AY179174,F

R832710,AY628200,

U73034,HQ688674,A

Y628202

Latino virus
NC_010758
vertebrates,human
2
Arenaviridae,Arenavirus,Latino virus
seg. S
AF485259,AF512830

Latino virus
NC_010760
vertebrates,human
1
Arenaviridae,Arenavirus,Latino virus
seg. L
EU627612

Lechiguanas virus
NC_003466
vertebrates,human
1
Bunyaviridae,Hantavirus,Andes virus
seg. S
AF482714

Lechiguanas virus
NC_003467
vertebrates,human
1
Bunyaviridae,Hantavirus,Andes virus
seg. M
AF028022

Lloviu virus
NC_016144
vertebrates,human
1
Filoviridae,Lloviu virus
—
JF828358

Lordsdale virus
NC_001959
vertebrates,human
1
Caliciviridae,Norovirus,Norwalk virus
—
X86557

Lujo virus
NC_012776
vertebrates,human
2
Arenaviridae,Arenavirus,Lujo virus
seg. S
JXQ17360,FJ952384

Lujo virus
NC_012777
vertebrates,human
2
Arenaviridae,Arenavirus,Lujo virus
seg. L
JXQ17362,FJ952385

Luna virus
NC_016152
vertebrates,human
5
Arenaviridae,Arenavirus,Luna virus
seg. S
AB586644,AB697691

,AB586646,AB70294

0,AB693148

Luna virus
NC_016153
vertebrates,human
5
Arenaviridae,Arenavirus,Luna virus
seg. L
AB693149,AB586645

,AB586647,AB70294

1,AB697692

Lunk virus NKS-1
NC_018710
vertebrates,human
1
Arenaviridae,Arenavirus,Lunk virus NKS-1
—
AB693150

Lunk virus NKS-1
NC_018711
vertebrates,human
1
Arenaviridae,Arenavirus,Lunk virus NKS-1
—
AB693151

Lymphocytic
NC_004291
vertebrates,human
16
Arenaviridae,Arenavirus,Lymphocytic
seg. L
JN872494,EU480451,

choriomeningitis virus

choriomeningitis virus

DQ868488,EU195889

,JQ4331,AB627954,E

U480453,DQ868484,

DQ286932,DQ86848

6,AB627956,AB4775

30,DQ361066,GQ862

981,AB627955,AF004

519

Lymphocytic
NC_004294
vertebrates,human
25
Arenaviridae,Arenavirus,Lymphocytic
seg. S
JN872495,AY847351,

choriomeningitis virus

choriomeningitis virus

EU480452,AB627952

,AB261991,DQ86848

5,DQ361065,FJ89588

2,DQ286931,DQ8684

87,FJ895883,AF3252

14,AF325215,M2213

8,FJ895884,AB26199

0,GQ862982,DQ1189

59,AB627951,JN6879

49,AB627953,EU480

450,M20869,AY8473

50,DQ868483

Macaca fascicularis
NC_015691
vertebrates,human
1
Papillomaviridae,Betapapillomavirus,Betapapil
—
GU014531

papillomavirus 2

lomavirus 6

Macaca fascicularis
NC_001531
vertebrates,human
1
Papillomaviridae,Betapapillomavirus,Betapapil
—
EF028290

papillomavirus type 1

lomavirus 1

Machupo virus
NC_005078
vertebrates,human
3
Arenaviridae,Arenavirus,Machupo virus
seg. S
JN794584,AY129248,

JN794586

Machupo virus
NC_005079
vertebrates,human
3
Arenaviridae,Arenavirus,Machupo virus
seg. L
AY358021,JN794583,

JN794585

Maciel virus
NC_003466
vertebrates,human
1
Bunyaviridae,Hantavirus,Andes virus
seg. S
AF482716

Mamastrovirus 1
NC_001943
vertebrates,human
1
Astroviridae,Mamastrovirus,Mamastrovirus 1
—
Z25771

Maporal virus
NC_003466
vertebrates,human
1
Bunyaviridae,Hantavirus,Andes virus
seg. S
AY267347

Maporal virus
NC_003467
vertebrates,human
1
Bunyaviridae,Hantavirus,Andes virus
seg. M
AY363179

Mapuera virus
NC_009489
vertebrates,human
1
Paramyxoviridae,Rubulavirus,Mapuera virus
—
EF095490

Marburg marburgvirus
NC_001608
vertebrates,human
36
Filoviridae,Marburgvirus,Marburg
—
JX458844,JX458854,

marburgvirus

JX458858,JX458852,

JX458847,JX458827,

JX458843,JX458830,

JX458833,JX458850,

JX458857,JX458849,

JX458842,JX458831,

JX458835,JX458826,

JX458836,JX458851,

JX458825,KC545388,

JX458856,JX458845,

JX458838,JX458834,

JX458846,JX458829,

JX458848,JX458837,

JX458828,JX458832,

JX458841,JX458853,

JX458839,KC545387,

JX458855,JX458840

Measles virus
NC_001498
vertebrates,human
50
Paramyxoviridae,Morbillivirus,Measles virus
—
EU435017,DQ345721

,AB481088,EU29355

0,K01711,E04903,DQ

227318,BD137596,B

D137590,EU293551,

AY730614,AB254456

,FJ416067,AB016162

,AB046218,DQ22732

1,AB591381,JF72765

0,BD137593,AF2662

88,FJ161211,JF7276

49,FJ211590,DQ3457

22,HM439386,Z6651

7,DQ227320,FJ21158

3,BD137595,AB0129

49,EU293552,DQ211

902,AB481087,GQ37

6027,EU293549,GQ3

76026,BD137592,AB

032167,BD137591,D

0345723,BD137597,

FJ416068,S58435,JF

791787,EF033071,E

U293548,BD137594,

DQ227319,AB012948

,FJ211589

Measles virus genotype D4
NC_001498
vertebrates,human
1
Paramyxoviridae,Morbillivirus,Measles virus
—
KC164757

Measles virus genotype G3
NC_001498
vertebrates,human
1
Paramyxoviridae,Morbillivirus,Measles virus
—
KC164758

Measles virus strain AIK-C
NC_001498
vertebrates,human
1
Paramyxoviridae,Morbillivirus,Measles virus
—
AF266286

Measles virus strain
NC_001498
vertebrates,human
3
Paramyxoviridae,Morbillivirus,Measles virus
—
AY486083,AY486084

Edmonston-Zagreb

,AF266290

Measles virus strain
NC_001498
vertebrates,human
1
Paramyxoviridae,Morbillivirus,Measles virus
—
JN635406

MVi/Arizona,USA/11,08/2

Measles virus strain
NC_001498
vertebrates,human
1
Paramyxoviridae,Morbillivirus,Measles virus
—
JN635410

MVi/California,USA/16,03

Measles virus strain
NC_001498
vertebrates,human
1
Paramyxoviridae,Morbillivirus,Measles virus
—
JN635409

MVi/California,USA/8,04

Measles virus strain
NC_001498
vertebrates,human
1
Paramyxoviridae,Morbillivirus,Measles virus
—
JN635403

MVi/Florida,USA/19,09

Measles virus strain
NC_001498
vertebrates,human
1
Paramyxoviridae,Morbillivirus,Measles virus
—
JN635408

MVi/New

Jersey,USA/45,05

Measles virus strain
NC_001498
vertebrates,human
1
Paramyxoviridae,Morbillivirus,Measles virus
—
JN635402

MVi/New

York,USA/26,09/3

Measles virus strain
NC_001498
vertebrates,human
1
Paramyxoviridae,Morbillivirus,Measles virus
—
JN635411

MVi/Pennsylvania,USA/20,

09

Measles virus strain
NC_001498
vertebrates,human
1
Paramyxoviridae,Morbillivirus,Measles virus
—
JN635407

MVi/Texas,USA/4,07

Measles virus strain
NC_001498
vertebrates,human
1
Paramyxoviridae,Morbillivirus,Measles virus
—
JN635404

MVi/Virginia,USA/15,09

Measles virus strain
NC_001498
vertebrates,human
1
Paramyxoviridae,Morbillivirus,Measles virus
—
JN635405

MVi/VVashington,

USA/18,0 8/1

Measles virus strain
NC_001498
vertebrates,human
1
Paramyxoviridae,Morbillivirus,Measles virus
—
AF266287

Moraten

Measles virus strain
NC_001498
vertebrates,human
1
Paramyxoviridae,Morbillivirus,Measles virus
—
AF266289

Rubeovax

Measles virus strain
NC_001498
vertebrates,human
1
Paramyxoviridae,Morbillivirus,Measles virus
—
AF266291

Schwarz

Menangle virus
NC_007620
vertebrates,human
2
Paramyxoviridae,Rubulavirus,Menangle virus
—
AF326114,JX112711

Merkel cell polyomavirus
NC_010277
vertebrates,human
41
Polyomaviridae,Polyomavirus,Merkel cell
—
HM011552,HM01155

polyomavirus

5,HM011554,KC2028

10,JN383840,JQ4793

19,EU375803,HM011

557,JN383838,FJ173

815,HM011547,HM01

1542,HM011544,JN3

83841,HM011538,EU

375804,HM011550,J

0479315,HM011556,

JF813001,JQ479320,

HM355825,JF813000

,HM011543,FJ46433

7,HM011546,HM0115

40,JF812999,HM011

548,HM011553,JF81

3002,JN383839,HMO

11551,HM011545,JQ

479317,JF813003,H

M011549,HM011539,

JQ479316,HM011541

,JQ479318

Mobala virus
NC_007903
vertebrates,human
1
Arenaviridae,Arenavirus,Mobala virus
seg. S
AY342390

Mobala virus
NC_007904
vertebrates,human
1
Arenaviridae,Arenavirus,Mobala virus
seg. L
DQ328876

Mokola virus
NC_006429
vertebrates,human
7
Rhabdoviridae,Lyssavirus,Mokola virus
—
KF155007,EU293117

,KF155008,Y09762,K

F155005,KF155006,E

U293118

Mopeia Lassa reassortant
NC_006572
vertebrates,human
1
Arenaviridae,Arenavirus,Mopeia Lassa virus
seg. L
AY772167

29

reassortant 29

Mopeia Lassa reassortant
NC_006573
vertebrates,human
1
Arenaviridae,Arenavirus,Mopeia Lassa virus
seg. S
AY772168

29

reassortant 29

Mopeia virus
NC_006574
vertebrates,human
1
Arenaviridae,Arenavirus,Mopeia virus
seg. L
DQ328875

Mopeia virus
NC_006575
vertebrates,human
2
Arenaviridae,Arenavirus,Mopeia virus
seg. S
DQ328874,M33879

Mopeia virus AN20410
NC_006574
vertebrates,human
1
Arenaviridae,Arenavirus,Mopeia virus
seg. L
AY772169

Mopeia virus AN20410
NC_006575
vertebrates,human
1
Arenaviridae,Arenavirus,Mopeia virus
seg. S
AY772170

Morogoro virus
NC_013057
vertebrates,human
1
Arenaviridae,Arenavirus,Morogoro virus
seg. S
EU914103

Morogoro virus
NC_013058
vertebrates,human
1
Arenaviridae,Arenavirus,Morogoro virus
seg. L
EU914104

Mossman virus
NC_005339
vertebrates,human
1
Paramyxoviridae, Mossman virus
—
AY286409

Mumps virus
NC_002200
vertebrates,human
50
Paramyxoviridae,Rubulavirus,Mumps virus
—
AF314560,AB000386,

JX287385,AB744048,

DQ649478,FJ375178,

FJ211584,AXQ81123,

JX287387,HQ416906

,HQ416907,JF727652

,AF314559,AXQ81134

,AB470486,AB57676

4,AF201473,AY30906

0,FJ375177,AY68149

5,JX287390,AF28079

9,AF314562,EU3702

06,AB600942,FJ2115

85,JN012242,AB0003

87,AB600843,AB744

049,JF727651,GU980

052,AXQ81133,FJ211

586,AB040874,AB0O

0388,JN635498,AF46

7767,AF314561,EU3

70207,FJ556896,EU8

84413,AF314558,AB8

27968,JX287389,JX2

87388,AY669145,JX2

87386,AY508995,JX2

87391

Mumps virus strain Jeryl
NC_002200
vertebrates,human
3
Paramyxoviridae,Rubulavirus,Mumps virus
—
FN431985,AF345290,

Lynn

AF338106

Mumps virus strain L-
NC_002200
vertebrates,human
2
Paramyxoviridae,Rubulavirus,Mumps virus
—
AY685920,AY685921

Zagreb

Murine pneumonia virus
NC_006579
vertebrates,human
1
Paramyxoviridae,Pneumovirus,Murine
—
AY729016

pneumonia virus

Nariva virus
NC_017937
vertebrates,human
1
Paramyxoviridae, Nariva virus
—
FJ362497

Newcastle disease virus
NC_002617
vertebrates,human
216
Paramyxoviridae,Avulavirus,Newcastle
—
KC542892,KC152049

disease virus

,JN986838,KC542900

,JF966387,KC920893

,KC542904,HM11772

0,JQ979176,HQ4127

67,JX443519,JX1930

74,JF343539,FJ4301

60,GQ338309,GQ849

007,KC542897,AY93

5495,FJ436302,HM3

57251,HM125898,JQ

013039,FJ386392,BD

218398,JX532092,JX

193081,DQ485231,JF

343538,HQ697254,A

Y562986,GQ994433,

KC894391,EU293914

,AY935493,KC84423

5,HQ902590,GQ2883

78,DQ486859,JX401

403,GQ918280,HQ31

7395,AY935496,HQ7

17357,FJ766527,JX4

01404,JN653340,JX1

93079,AB524406,KC

542902,JN800306,FJ

754271,JF950510,AY

935499,JX390609,D

0659677,JQ015296,

HM063424,JX316216

,AB534205,Y18898,F

J436305,HM063425,

KC542896,AY935494

,HQ697255,KC55196

7,FJ794269,KC54289

3,JQ993431,KC5429

13,HQ266602,JX193

083,AY225110,AY93

5489,GQ288389,JF8

27027,HM063423,FJ

751918,GU187941,J

N599167,GQ288391,

FJ872531,GQ994434

,AY741404,HM06342

2,AY935497,HQ0083

37,GQ338310,JXQ12

096,KC542914,AY93

5492,KC934169,FJ38

6393,JX393313,KF77

1883,HM188399,JF9

50509,EU289028,AY

562987,AY562985,JX

193078,FJ436303,JN

688863,AY865652,JN

400896,KF727980,G

0288390,KC542908,

JF893453,AY935498,

GU143550,KC152048

,KC542901,JQ01529

5,JN400895,KC90618

8,JN688862,FJ98619

2,KC542905,EU2890

29,FJ386396,JN6183

49,EU140955,FJ4363

06,GU978777,JX524

203,JX401405,JN653

339,FJ766529,JN682

211,JF827026,JX193

082,JN682210,GQ28

8392,HQ839733,AF0

77761,JN688865,DQ

060053,AB524405,K

C542911,KF740478,

DQ839397,KC461214

,KC542906,JQ71394

4,JN986837,GU5643

99,AY562990,GQ288

380,GQ338311,AY56

2989,FJ766526,GU58

5905,AXQ08510,KC9

34170,FJ386395,JF9

66385,KC542903,AY

845400,JF340367,JQ

015297,FJ430159,KC

542907,KC542910,E

U167540,DQ485229,

KC246549,AY935491

,AY562991,JX193075

,HQ317394,JF966386

,JX193080,FJ939313,

DQ485230,JX854452

,EF065682,JX974435

,GQ429293,JX11063

5,FJ754272,FJ75191

9,KC542898,FJ76653

0,FJ386394,AF43174

4,EU546165,FJ75427

3,DQ097394,EF2018

05,AY935500,FJ7665

28,FJ436304,GQ288

379,JQ247691,JN400

897,JN986839,JX119

193,JX193076,KC542

894,KC542912,HQ26

6603,JX193077,JN68

8864,FJ766531,JF79

5531,KC542895,GQ2

88377,KC542909,DQ

097393,AY562988,A

Y935490,JN631747,J

N618348,JX519467,K

C542899

Newcastle disease virus B1
NC_002617
vertebrates,human
2
Paramyxoviridae,Avulavirus,Newcastle
—
AF375823,AF309418

disease virus

Nipah virus
NC_002728
vertebrates,human
11
Paramyxoviridae,Henipavirus,Nipah virus
—
AJ627196,JN808857,

AJ564621,AY029768,

FJ513078,AF212302,

JN808863,AJ564622,

AJ564623,AY988601,

AY029767

Norovirus
NC_001959
vertebrates,human
1
Caliciviridae,Norovirus,Norwalk virus
—
AF097917

Bo/Newbury2/1976/UK

Norovirus
NC_001959
vertebrates,human
1
Caliciviridae,Norovirus,Norwalk virus
—
GU017903

Hu/8533/Maizuru/08/JPN

Norovirus Hu/Chiba/04-
NC_001959
vertebrates,human
1
Caliciviridae,Norovirus,Norwalk virus
—
AB220921

1050/2005/JP

Norovirus Hu/G1,1/
NC_001959
vertebrates,human
1
Caliciviridae,Norovirus,Norwalk virus
—
KF429773

8CKII Ic/1974/USA

Norovirus Hu/G1,1/
NC_001959
vertebrates,human
1
Caliciviridae,Norovirus,Norwalk virus
—
JXQ23285

8FI la/1968/USA

Norovirus
NC_001959
vertebrates,human
1
Caliciviridae,Norovirus,Norwalk virus
—
KF429783

Hu/GI,1/8K/1979/USA

Norovirus
NC_001959
vertebrates,human
1
Caliciviridae,Norovirus,Norwalk virus
—
KF429789

Hu/GI,1/8MC/1978/USA

Norovirus Hu/G1,1/
NC_001959
vertebrates,human
1
Caliciviridae,Norovirus,Norwalk virus
—
KF429770

8McI11/1973/USA

Norovirus Hu/GI,1/
NC_001959
vertebrates,human
1
Caliciviridae,Norovirus,Norwalk virus
—
KF429761

8Moll I L/1972/USA

Norovirus
NC_001959
vertebrates,human
1
Caliciviridae,Norovirus,Norwalk virus
—
KF429774

Hu/G1,1/8U11If/1973/USA

Norovirus
NC_001959
vertebrates,human
1
Caliciviridae,Norovirus,Norwalk virus
—
KF429765

Hu/GI,1/8W/1951/USA

Norovirus
NC_001959
vertebrates,human
1
Caliciviridae,Norovirus,Norwalk virus
—
KF039731

Hu/GI,1/CH4XQ533/2009/

USA

Norovirus
NC_001959
vertebrates,human
1
Caliciviridae,Norovirus,Norwalk virus
—
KF039728

Hu/GI,1/CHA2A014/

2008/USA

Norovirus
NC_001959
vertebrates,human
1
Caliciviridae,Norovirus,Norwalk virus
—
KF039735

Hu/GI,1/CHA3A007/

2008/USA

Norovirus
NC_001959
vertebrates,human
1
Caliciviridae,Norovirus,Norwalk virus
—
KF039732

Hu/GI,1/CHA5A010/

2009/USA

Norovirus
NC_001959
vertebrates,human
1
Caliciviridae,Norovirus,Norwalk virus
—
KF039727

Hu/GI,1/CHA6A003_20091

028/2009/U SA

Norovirus
NC_001959
vertebrates,human
1
Caliciviridae,Norovirus,Norwalk virus
—
KF039726

Hu/GI,1/CHA6A003_20091

031/2009/U SA

Norovirus
NC_001959
vertebrates,human
1
Caliciviridae,Norovirus,Norwalk virus
—
KF039737

Hu/GI,1/CHA6A003_20091

104/2009/U SA

Norovirus
NC_001959
vertebrates,human
1
Caliciviridae,Norovirus,Norwalk virus
—
KF039729

Hu/GI,1/CHA6A007/

2010/USA

Norovirus
NC_001959
vertebrates,human
1
Caliciviridae,Norovirus,Norwalk virus
—
KF039734

Hu/GI,1/CHA6A014/

2009/USA

Norovirus
NC_001959
vertebrates,human
1
Caliciviridae,Norovirus,Norwalk virus
—
KF039725

Hu/GI,1/CHA7A009/

2010/USA

Norovirus
NC_001959
vertebrates,human
1
Caliciviridae,Norovirus,Norwalk virus
—
KF039736

Hu/GI,1/CHA7A011/

2010/USA

Norovirus Hu/GI,1/
NC_001959
vertebrates,human
1
Caliciviridae,Norovirus,Norwalk virus
—
KF039730

CHA9A004_20110

419/2011/USA

Norovirus Hu/GI,1/
NC_001959
vertebrates,human
1
Caliciviridae,Norovirus,Norwalk virus
—
KF039733

CHA9A004_20110

426/2011/USA

Norovirus Hu/G1,2/
NC_001959
vertebrates,human
1
Caliciviridae,Norovirus,Norwalk virus
—
KF306212

Jingzhou/2013401/

CHN

Norovirus Hu/GI,2
NC_001959
vertebrates,human
1
Caliciviridae,Norovirus,Norwalk virus
—
FJ515294

/Leuven/2003/BEL

Norovirus Hu/G1,6/
NC_001959
vertebrates,human
1
Caliciviridae,Norovirus,Norwalk virus
—
JQ388274

Kingston/ACT160D

/2010/AU

Norovirus Hu/GI/
NC_001959
vertebrates,human
1
Caliciviridae,Norovirus,Norwalk virus
—
JQ911594

10360/2010/VNM

Norovirus Hu/G1/
NC_001959
vertebrates,human
1
Caliciviridae,Norovirus,Norwalk virus
—
KC409317

30257/2009/VNM

Norovirus Hu/GI/
NC_001959
vertebrates,human
1
Caliciviridae,Norovirus,Norwalk virus
—
AB187514

Otof uke/1979/JP

Norovirus Hu/GII-
NC_001959
vertebrates,human
1
Caliciviridae,Norovirus,Norwalk virus
—
AB541201

4/Aichi1/2007/JP

Norovirus Hu/GII-
NC_001959
vertebrates,human
1
Caliciviridae,Norovirus,Norwalk virus
—
AB541202

4/Aichi1/2008/JP

Norovirus Hu/GII-
NC_001959
vertebrates,human
1
Caliciviridae,Norovirus,Norwalk virus
—
AB541203

4/Aichi2/2007/JP

Norovirus Hu/GII-
NC_001959
vertebrates,human
1
Caliciviridae,Norovirus,Norwalk virus
—
AB541204

4/Aichi2/2008/JP

Norovirus Hu/GII-
NC_001959
vertebrates,human
1
Caliciviridae,Norovirus,Norwalk virus
—
AB447446

4/Aichi3/2006/JP

Norovirus Hu/GII-
NC_001959
vertebrates,human
1
Caliciviridae,Norovirus,Norwalk virus
—
AB541205

4/Aichi3/2007/JP

Norovirus Hu/GII-
NC_001959
vertebrates,human
1
Caliciviridae,Norovirus,Norwalk virus
—
AB541206

4/Aichi3/2008/JP

Norovirus Hu/GII-
NC_001959
vertebrates,human
1
Caliciviridae,Norovirus,Norwalk virus
—
AB447447

4/Aichi4/2006/JP

Norovirus Hu/GII-
NC_001959
vertebrates,human
1
Caliciviridae,Norovirus,Norwalk virus
—
AB541207

4/Aichi4/2007/JP

Norovirus Hu/GII-
NC_001959
vertebrates,human
1
Caliciviridae,Norovirus,Norwalk virus
—
AB541208

4/Aichi4/2008/JP

Norovirus Hu/GII-
NC_001959
vertebrates,human
1
Caliciviridae,Norovirus,Norwalk virus
—
AB541209

4/Aichi5/2007/JP

Norovirus Hu/GII-
NC_001959
vertebrates,human
1
Caliciviridae,Norovirus,Norwalk virus
—
AB541210

4/Aichi5/2008/JP

Norovirus Hu/GII-
NC_001959
vertebrates,human
1
Caliciviridae,Norovirus,Norwalk virus
—
AB447436

4/Akita1/2006/JP

Norovirus Hu/GII-
NC_001959
vertebrates,human
1
Caliciviridae,Norovirus,Norwalk virus
—
AB541211

4/Akita1/2007/JP

Norovirus Hu/GII-
NC_001959
vertebrates,human
1
Caliciviridae,Norovirus,Norwalk virus
—
AB447437

4/Akita2/2006/JP

Norovirus Hu/GII-
NC_001959
vertebrates,human
1
Caliciviridae,Norovirus,Norwalk virus
—
AB541213

4/Akita2/2008/JP

Norovirus Hu/GII-
NC_001959
vertebrates,human
1
Caliciviridae,Norovirus,Norwalk virus
—
AB541214

4/Akita3/2007/JP

Norovirus Hu/GII-
NC_001959
vertebrates,human
1
Caliciviridae,Norovirus,Norwalk virus
—
AB541215

4/Akita3/2008/JP

Norovirus Hu/GII-
NC_001959
vertebrates,human
1
Caliciviridae,Norovirus,Norwalk virus
—
AB447438

4/Akita4/2006/JP

Norovirus Hu/GII-
NC_001959
vertebrates,human
1
Caliciviridae,Norovirus,Norwalk virus
—
AB541216

4/Akita4/2008/JP

Norovirus Hu/GII-
NC_001959
vertebrates,human
1
Caliciviridae,Norovirus,Norwalk virus
—
AB447439

4/Akita5/2006/JP

Norovirus Hu/GII-
NC_001959
vertebrates,human
1
Caliciviridae,Norovirus,Norwalk virus
—
AB541217

4/Akita5/2007/JP

Norovirus Hu/GII-
NC_001959
vertebrates,human
1
Caliciviridae,Norovirus,Norwalk virus
—
AB447432

4/Aomori1/2006/JP

Norovirus Hu/GII-
NC_001959
vertebrates,human
1
Caliciviridae,Norovirus,Norwalk virus
—
AB541218

4/Aomori1/2007/JP

Norovirus Hu/GII-
NC_001959
vertebrates,human
1
Caliciviridae,Norovirus,Norwalk virus
—
AB541219

4/Aomori1/2008/JP

Norovirus Hu/GII-
NC_001959
vertebrates,human
1
Caliciviridae,Norovirus,Norwalk virus
—
AB447433

4/Aomori2/2006/JP

Norovirus Hu/GII-
NC_001959
vertebrates,human
1
Caliciviridae,Norovirus,Norwalk virus
—
AB541220

4/Aomori2/2007/JP

Norovirus Hu/GII-
NC_001959
vertebrates,human
1
Caliciviridae,Norovirus,Norwalk virus
—
AB541222

4/Aomori3/2007/JP

Norovirus Hu/GII-
NC_001959
vertebrates,human
1
Caliciviridae,Norovirus,Norwalk virus
—
AB541223

4/Aomori3/2008/JP

Norovirus Hu/GII-
NC_001959
vertebrates,human
1
Caliciviridae,Norovirus,Norwalk virus
—
AB447434

4/Aomori4/2006/JP

Norovirus Hu/GII-
NC_001959
vertebrates,human
1
Caliciviridae,Norovirus,Norwalk virus
—
AB541224

4/Aomori4/2007/JP

Norovirus Hu/GII-
NC_001959
vertebrates,human
1
Caliciviridae,Norovirus,Norwalk virus
—
AB541225

4/Aomori4/2008/JP

Norovirus Hu/GII-
NC_001959
vertebrates,human
1
Caliciviridae,Norovirus,Norwalk virus
—
AB447435

4/Aomori5/2006/JP

Norovirus Hu/GII-
NC_001959
vertebrates,human
1
Caliciviridae,Norovirus,Norwalk virus
—
AB541226

4/Aomori5/2007/JP

Norovirus Hu/GII-
NC_001959
vertebrates,human
1
Caliciviridae,Norovirus,Norwalk virus
—
AB541227

4/Aomori5/2008/JP

Norovirus Hu/GII-
NC_001959
vertebrates,human
1
Caliciviridae,Norovirus,Norwalk virus
—
JQ622197

4/CBNU2/2007/KR

Norovirus Hu/GII-
NC_001959
vertebrates,human
1
Caliciviridae,Norovirus,Norwalk virus
—
JN400599

4/CGMHQ1/2006/TW

Norovirus Hu/GII-
NC_001959
vertebrates,human
1
Caliciviridae,Norovirus,Norwalk virus
—
JN400600

4/CGMHQ2/2006/TW

Norovirus Hu/GII-
NC_001959
vertebrates,human
1
Caliciviridae,Norovirus,Norwalk virus
—
JN400601

4/CGMHQ3/2006/TW

Norovirus Hu/GII-
NC_001959
vertebrates,human
1
Caliciviridae,Norovirus,Norwalk virus
—
JN400602

4/CGMHQ4/2006/TW

Norovirus Hu/GII-
NC_001959
vertebrates,human
1
Caliciviridae,Norovirus,Norwalk virus
—
JN400603

4/CGMHQ5/2006/TW

Norovirus Hu/GII-
NC_001959
vertebrates,human
1
Caliciviridae,Norovirus,Norwalk virus
—
JN400604

4/CGMHQ6/2006/TW

Norovirus Hu/GII-
NC_001959
vertebrates,human
1
Caliciviridae,Norovirus,Norwalk virus
—
JN400605

4/CGMHQ7/2006/TW

Norovirus Hu/GII-
NC_001959
vertebrates,human
1
Caliciviridae,Norovirus,Norwalk virus
—
JN400606

4/CGMHQ8/2006/TW

Norovirus Hu/GII-
NC_001959
vertebrates,human
1
Caliciviridae,Norovirus,Norwalk virus
—
JN400607

4/CGMHQ9/2006/TW

Norovirus Hu/GII-
NC_001959
vertebrates,human
1
Caliciviridae,Norovirus,Norwalk virus
—
JN400608

4/CGMH10/2006/TW

Norovirus Hu/GII-
NC_001959
vertebrates,human
1
Caliciviridae,Norovirus,Norwalk virus
—
JN400609

4/CGMH11/2006/TW

Norovirus Hu/GII-
NC_001959
vertebrates,human
1
Caliciviridae,Norovirus,Norwalk virus
—
JN400610

4/CGMH12/2007/TW

Norovirus Hu/GII-
NC_001959
vertebrates,human
1
Caliciviridae,Norovirus,Norwalk virus
—
JN400611

4/CGMH13/2007/TW

Norovirus Hu/GII-
NC_001959
vertebrates,human
1
Caliciviridae,Norovirus,Norwalk virus
—
JN400612

4/CGMH14/2007/TW

Norovirus Hu/GII-
NC_001959
vertebrates,human
1
Caliciviridae,Norovirus,Norwalk virus
—
JN400613

4/CGMH15/2007/TW

Norovirus Hu/GII-
NC_001959
vertebrates,human
1
Caliciviridae,Norovirus,Norwalk virus
—
JN400614

4/CGMH16/2007/TW

Norovirus Hu/GII-
NC_001959
vertebrates,human
1
Caliciviridae,Norovirus,Norwalk virus
—
JN400615

4/CGMH17/2007/TW

Norovirus Hu/GII-
NC_001959
vertebrates,human
1
Caliciviridae,Norovirus,Norwalk virus
—
JN400616

4/CGMH18/2008/TW

Norovirus Hu/GII-
NC_001959
vertebrates,human
1
Caliciviridae,Norovirus,Norwalk virus
—
JN400617

4/CGMH19/2009/TW

Norovirus Hu/GII-
NC_001959
vertebrates,human
1
Caliciviridae,Norovirus,Norwalk virus
—
JN400618

4/CGMH20/2009/TW

Norovirus Hu/GII-
NC_001959
vertebrates,human
1
Caliciviridae,Norovirus,Norwalk virus
—
JN400619

4/CGMH21/2010/TW

Norovirus Hu/GII-
NC_001959
vertebrates,human
1
Caliciviridae,Norovirus,Norwalk virus
—
JN400620

4/CGMH22/2010/TW

Norovirus Hu/GII-
NC_001959
vertebrates,human
1
Caliciviridae,Norovirus,Norwalk virus
—
JN400621

4/CGMH23/2010/TW

Norovirus Hu/GII-
NC_001959
vertebrates,human
1
Caliciviridae,Norovirus,Norwalk virus
—
JN400622

4/CGMH24/2010/TW

Norovirus Hu/GII-
NC_001959
vertebrates,human
1
Caliciviridae,Norovirus,Norwalk virus
—
JN400623

4/CGMH25/2010/TW

Norovirus Hu/GII-
NC_001959
vertebrates,human
1
Caliciviridae,Norovirus,Norwalk virus
—
JN400624

4/CGMH26/2010/TW

Norovirus Hu/GII-
NC_001959
vertebrates,human
1
Caliciviridae,Norovirus,Norwalk virus
—
JN400625

4/CGMH27/2010/TW

Norovirus Hu/GII-
NC_001959
vertebrates,human
1
Caliciviridae,Norovirus,Norwalk virus

JN400626

4/CGMH28/2010/TW

Norovirus Hu/GII-4/
NC_001959
vertebrates,human
1
Caliciviridae,Norovirus,Norwalk virus
—
FJ514242

CUK-3/2008/KR

Norovirus Hu/GII-
NC_001959
vertebrates,human
1
Caliciviridae,Norovirus,Norwalk virus
—
AB541228

4/Chiba1/2007/JP

Norovirus Hu/GII-
NC_001959
vertebrates,human
1
Caliciviridae,Norovirus,Norwalk virus
—
AB541229

4/Chiba1/2008/JP

Norovirus Hu/GII-
NC_001959
vertebrates,human
1
Caliciviridae,Norovirus,Norwalk virus
—
AB541230

4/Chiba2/2007/JP

Norovirus Hu/GII-
NC_001959
vertebrates,human
1
Caliciviridae,Norovirus,Norwalk virus
—
AB541231

4/Chiba2/2008/JP

Norovirus Hu/GII-
NC_001959
vertebrates,human
1
Caliciviridae,Norovirus,Norwalk virus
—
AB541232

4/Chiba4/2007/JP

Norovirus Hu/GII-
NC_001959
vertebrates,human
1
Caliciviridae,Norovirus,Norwalk virus
—
AB541233

4/Chiba4/2008/JP

Norovirus Hu/GII-
NC_001959
vertebrates,human
1
Caliciviridae,Norovirus,Norwalk virus
—
AB541234

4/Chiba5/2007/JP

Norovirus Hu/GII-
NC_001959
vertebrates,human
1
Caliciviridae,Norovirus,Norwalk virus
—
AB541235

4/Chiba5/2008/JP

Norovirus Hu/GII-
NC_001959
vertebrates,human
1
Caliciviridae,Norovirus,Norwalk virus
—
AB447453

4/Ehime1/2006/JP

Norovirus Hu/GII-
NC_001959
vertebrates,human
1
Caliciviridae,Norovirus,Norwalk virus
—
AB541236

4/Ehime1/2007/JP

Norovirus Hu/GII-
NC_001959
vertebrates,human
1
Caliciviridae,Norovirus,Norwalk virus
—
AB541237

4/Ehime1/2008/JP

Norovirus Hu/GII-
NC_001959
vertebrates,human
1
Caliciviridae,Norovirus,Norwalk virus
—
AB447454

4/Ehime2/2006/JP

Norovirus Hu/GII-
NC_001959
vertebrates,human
1
Caliciviridae,Norovirus,Norwalk virus
—
AB541238

4/Ehime2/2007/JP

Norovirus Hu/GII-
NC_001959
vertebrates,human
1
Caliciviridae,Norovirus,Norwalk virus
—
AB541239

4/Ehime3/2007/JP

Norovirus Hu/GII-
NC_001959
vertebrates,human
1
Caliciviridae,Norovirus,Norwalk virus
—
AB541240

4/Ehime3/2008/JP

Norovirus Hu/GII-
NC_001959
vertebrates,human
1
Caliciviridae,Norovirus,Norwalk virus
—
AB541241

4/Ehime4/2007/JP

Norovirus Hu/GII-
NC_001959
vertebrates,human
1
Caliciviridae,Norovirus,Norwalk virus
—
AB541242

4/Ehime4/2008/JP

Norovirus Hu/GII-
NC_001959
vertebrates,human
1
Caliciviridae,Norovirus,Norwalk virus
—
AB447455

4/Ehime5/2006/JP

Norovirus Hu/GII-
NC_001959
vertebrates,human
1
Caliciviridae,Norovirus,Norwalk virus
—
AB541243

4/Ehime5/2008/JP

Norovirus Hu/GII-
NC_001959
vertebrates,human
1
Caliciviridae,Norovirus,Norwalk virus
—
AB543808

4/FUMI/2010/JP

Norovirus Hu/GII-
NC_001959
vertebrates,human
1
Caliciviridae,Norovirus,Norwalk virus
—
AB541244

4/Fukui1/2008/JP

Norovirus Hu/GII-
NC_001959
vertebrates,human
1
Caliciviridae,Norovirus,Norwalk virus
—
AB541245

4/Fukui2/2007/JP

Norovirus Hu/GII-
NC_001959
vertebrates,human
1
Caliciviridae,Norovirus,Norwalk virus
—
AB541246

4/Fukui2/2008/JP

Norovirus Hu/GII-
NC_001959
vertebrates,human
1
Caliciviridae,Norovirus,Norwalk virus
—
AB541247

4/Fukui4/2007/JP

Norovirus Hu/GII-
NC_001959
vertebrates,human
1
Caliciviridae,Norovirus,Norwalk virus
—
AB541248

4/Fukui4/2008/JP

Norovirus Hu/GII-
NC_001959
vertebrates,human
1
Caliciviridae,Norovirus,Norwalk virus
—
AB541249

4/Fukui5/2007/JP

Norovirus Hu/GII-
NC_001959
vertebrates,human
1
Caliciviridae,Norovirus,Norwalk virus
—
AB541250

4/Fukui5/2008/JP

Norovirus Hu/GII-
NC_001959
vertebrates,human
1
Caliciviridae,Norovirus,Norwalk virus
—
AB447451

4/Hiroshima1/2006/JP

Norovirus Hu/GII-
NC_001959
vertebrates,human
1
Caliciviridae,Norovirus,Norwalk virus
—
AB541251

4/Hiroshima1/2007/JP

Norovirus Hu/GII-
NC_001959
vertebrates,human
1
Caliciviridae,Norovirus,Norwalk virus
—
AB541252

4/Hiroshima1/2008/JP

Norovirus Hu/GII-
NC_001959
vertebrates,human
1
Caliciviridae,Norovirus,Norwalk virus
—
AB447452

4/Hiroshima2/2006/JP

Norovirus Hu/GII-
NC_001959
vertebrates,human
1
Caliciviridae,Norovirus,Norwalk virus
—
AB541253

4/Hiroshima2/2007/JP

Norovirus Hu/GII-
NC_001959
vertebrates,human
1
Caliciviridae,Norovirus,Norwalk virus
—
AB541254

4/Hiroshima2/2008/JP

Norovirus Hu/GII-
NC_001959
vertebrates,human
1
Caliciviridae,Norovirus,Norwalk virus
—
AB541255

4/Hiroshima3/2007/JP

Norovirus Hu/GII-
NC_001959
vertebrates,human
1
Caliciviridae,Norovirus,Norwalk virus
—
AB541256

4/Hiroshima3/2008/JP

Norovirus Hu/GII-
NC_001959
vertebrates,human
1
Caliciviridae,Norovirus,Norwalk virus
—
AB541257

4/Hiroshima4/2007/JP

Norovirus Hu/GII-
NC_001959
vertebrates,human
1
Caliciviridae,Norovirus,Norwalk virus
—
AB541258

4/Hiroshima4/2008/JP

Norovirus Hu/GII-
NC_001959
vertebrates,human
1
Caliciviridae,Norovirus,Norwalk virus
—
AB541259

4/Hiroshima5/2008/JP

Norovirus Hu/GII-
NC_001959
vertebrates,human
1
Caliciviridae,Norovirus,Norwalk virus
—
AB447427

4/Hokkaido1/2006/JP

Norovirus Hu/GII-
NC_001959
vertebrates,human
1
Caliciviridae,Norovirus,Norwalk virus
—
AB541260

4/Hokkaido1/2007/JP

Norovirus Hu/GII-
NC_001959
vertebrates,human
1
Caliciviridae,Norovirus,Norwalk virus
—
AB541261

4/Hokkaido1/2008/JP

Norovirus Hu/GII-
NC_001959
vertebrates,human
1
Caliciviridae,Norovirus,Norwalk virus
—
AB447428

4/Hokkaido2/2006/JP

Norovirus Hu/GII-
NC_001959
vertebrates,human
1
Caliciviridae,Norovirus,Norwalk virus
—
AB541262

4/Hokkaido2/2007/JP

Norovirus Hu/GII-
NC_001959
vertebrates,human
1
Caliciviridae,Norovirus,Norwalk virus
—
AB541263

4/Hokkaido2/2008/JP

Norovirus Hu/GII-
NC_001959
vertebrates,human
1
Caliciviridae,Norovirus,Norwalk virus
—
AB447429

4/Hokkaido3/2006/JP

Norovirus Hu/GII-
NC_001959
vertebrates,human
1
Caliciviridae,Norovirus,Norwalk virus
—
AB541264

4/Hokkaido3/2008/JP

Norovirus Hu/GII-
NC_001959
vertebrates,human
1
Caliciviridae,Norovirus,Norwalk virus
—
AB447430

4/Hokkaido4/2006/JP

Norovirus Hu/GII-
NC_001959
vertebrates,human
1
Caliciviridae,Norovirus,Norwalk virus
—
AB541265

4/Hokkaido4/2007/JP

Norovirus Hu/GII-
NC_001959
vertebrates,human
1
Caliciviridae,Norovirus,Norwalk virus
—
AB541266

4/Hokkaido4/2008/JP

Norovirus Hu/GII-
NC_001959
vertebrates,human
1
Caliciviridae,Norovirus,Norwalk virus
—
AB447431

4/Hokkaido5/2006/JP

Norovirus Hu/GII-
NC_001959
vertebrates,human
1
Caliciviridae,Norovirus,Norwalk virus
—
AB541267

4/Hokkaido5/2007/JP

Norovirus Hu/GII-
NC_001959
vertebrates,human
1
Caliciviridae,Norovirus,Norwalk virus
—
AB541268

4/Hokkaido5/2008/JP

Norovirus Hu/GII-
NC_001959
vertebrates,human
1
Caliciviridae,Norovirus,Norwalk virus
—
AB541269

4/Iwate1/2008/JP

Norovirus Hu/GII-
NC_001959
vertebrates,human
1
Caliciviridae,Norovirus,Norwalk virus
—
AB541270

4/Iwate2/2007/JP

Norovirus Hu/GII-
NC_001959
vertebrates,human
1
Caliciviridae,Norovirus,Norwalk virus
—
AB541271

4/Iwate3/2007/JP

Norovirus Hu/GII-
NC_001959
vertebrates,human
1
Caliciviridae,Norovirus,Norwalk virus
—
AB541272

4/Iwate3/2008/JP

Norovirus Hu/GII-
NC_001959
vertebrates,human
1
Caliciviridae,Norovirus,Norwalk virus
—
AB541273

4/Iwate4/2007/JP

Norovirus Hu/GII-
NC_001959
vertebrates,human
1
Caliciviridae,Norovirus,Norwalk virus
—
AB541274

4/Iwate4/2008/JP

Norovirus Hu/GII-
NC_001959
vertebrates,human
1
Caliciviridae,Norovirus,Norwalk virus
—
AB541275

4/Iwate5/2007/JP

Norovirus Hu/GII-
NC_001959
vertebrates,human
1
Caliciviridae,Norovirus,Norwalk virus
—
AB541276

4/Iwate5/2008/JP

Norovirus Hu/GII-
NC_001959
vertebrates,human
1
Caliciviridae,Norovirus,Norwalk virus
—
AB447459

4/Kumamoto1/2006/JP

Norovirus Hu/GII-
NC_001959
vertebrates,human
1
Caliciviridae,Norovirus,Norwalk virus
—
AB541277

4/Kumamoto1/2007/JP

Norovirus Hu/GII-
NC_001959
vertebrates,human
1
Caliciviridae,Norovirus,Norwalk virus
—
AB447460

4/Kumamoto2/2006/JP

Norovirus Hu/GII-
NC_001959
vertebrates,human
1
Caliciviridae,Norovirus,Norwalk virus
—
AB541278

4/Kumamoto2/2007/JP

Norovirus Hu/GII-
NC_001959
vertebrates,human
1
Caliciviridae,Norovirus,Norwalk virus
—
AB447461

4/Kumamoto3/2006/JP

Norovirus Hu/GII-
NC_001959
vertebrates,human
1
Caliciviridae,Norovirus,Norwalk virus
—
AB541279

4/Kumamoto3/2007/JP

Norovirus Hu/GII-
NC_001959
vertebrates,human
1
Caliciviridae,Norovirus,Norwalk virus
—
AB447462

4/Kumamoto4/2006/JP

Norovirus Hu/GII-
NC_001959
vertebrates,human
1
Caliciviridae,Norovirus,Norwalk virus
—
AB541280

4/Kumamoto4/2007/JP

Norovirus Hu/GII-
NC_001959
vertebrates,human
1
Caliciviridae,Norovirus,Norwalk virus
—
AB447463

4/Kumamoto5/2006/JP

Norovirus Hu/GII-
NC_001959
vertebrates,human
1
Caliciviridae,Norovirus,Norwalk virus
—
AB541281

4/Miyagi1/2007/JP

Norovirus Hu/GII-
NC_001959
vertebrates,human
1
Caliciviridae,Norovirus,Norwalk virus
—
AB447440

4/Miyagi2/2006/JP

Norovirus Hu/GII-
NC_001959
vertebrates,human
1
Caliciviridae,Norovirus,Norwalk virus
—
AB541282

4/Miyagi2/2007/JP

Norovirus Hu/GII-
NC_001959
vertebrates,human
1
Caliciviridae,Norovirus,Norwalk virus
—
AB541283

4/Miyagi3/2007/JP

Norovirus Hu/GII-
NC_001959
vertebrates,human
1
Caliciviridae,Norovirus,Norwalk virus
—
AB447441

4/Miyagi4/2006/JP

Norovirus Hu/GII-
NC_001959
vertebrates,human
1
Caliciviridae,Norovirus,Norwalk virus
—
AB447442

4/Miyagi5/2006/JP

Norovirus Hu/GII-
NC_001959
vertebrates,human
1
Caliciviridae,Norovirus,Norwalk virus
—
AB541284

4/Miyagi5/2008/JP

Norovirus Hu/GII-
NC_001959
vertebrates,human
1
Caliciviridae,Norovirus,Norwalk virus
—
AB541288

4/Miyazaki1/2007/JP

Norovirus Hu/GII-
NC_001959
vertebrates,human
1
Caliciviridae,Norovirus,Norwalk virus
—
AB541289

4/Miyazaki1/2008/JP

Norovirus Hu/GII-
NC_001959
vertebrates,human
1
Caliciviridae,Norovirus,Norwalk virus
—
AB541285

4/Miyazaki10/2008/JP

Norovirus Hu/GII-
NC_001959
vertebrates,human
1
Caliciviridae,Norovirus,Norwalk virus
—
AB541286

4/Miyazaki12/2008/JP

Norovirus Hu/GII-
NC_001959
vertebrates,human
1
Caliciviridae,Norovirus,Norwalk virus
—
AB541287

4/Miyazaki13/2008/JP

Norovirus Hu/GII-
NC_001959
vertebrates,human
1
Caliciviridae,Norovirus,Norwalk virus
—
AB541290

4/Miyazaki2/2007/JP

Norovirus Hu/GII-
NC_001959
vertebrates,human
1
Caliciviridae,Norovirus,Norwalk virus
—
AB541291

4/Miyazaki2/2008/JP

Norovirus Hu/GII-
NC_001959
vertebrates,human
1
Caliciviridae,Norovirus,Norwalk virus
—
AB541292

4/Miyazaki3/2007/JP

Norovirus Hu/GII-
NC_001959
vertebrates,human
1
Caliciviridae,Norovirus,Norwalk virus
—
AB541293

4/Miyazaki3/2008/JP

Norovirus Hu/GII-
NC_001959
vertebrates,human
1
Caliciviridae,Norovirus,Norwalk virus
—
AB541294

4/Miyazaki4/2007/JP

Norovirus Hu/GII-
NC_001959
vertebrates,human
1
Caliciviridae,Norovirus,Norwalk virus
—
AB541295

4/Miyazaki4/2008/JP

Norovirus Hu/GII-
NC_001959
vertebrates,human
1
Caliciviridae,Norovirus,Norwalk virus
—
AB541296

4/Miyazaki5/2007/JP

Norovirus Hu/GII-
NC_001959
vertebrates,human
1
Caliciviridae,Norovirus,Norwalk virus
—
AB541297

4/Miyazaki6/2008/JP

Norovirus Hu/GII-
NC_001959
vertebrates,human
1
Caliciviridae,Norovirus,Norwalk virus
—
AB541298

4/Miyazaki7/2008/JP

Norovirus Hu/GII-
NC_001959
vertebrates,human
1
Caliciviridae,Norovirus,Norwalk virus
—
AB541299

4/Miyazaki8/2008/JP

Norovirus Hu/GII-
NC_001959
vertebrates,human
1
Caliciviridae,Norovirus,Norwalk virus
—
AB541301

4/Nagano1/2007/JP

Norovirus Hu/GII-
NC_001959
vertebrates,human
1
Caliciviridae,Norovirus,Norwalk virus
—
AB541302

4/N agano1/2008/JP

Norovirus Hu/GII-
NC_001959
vertebrates,human
1
Caliciviridae,Norovirus,Norwalk virus
—
AB541303

4/Nagano2/2007/JP

Norovirus Hu/GII-
NC_001959
vertebrates,human
1
Caliciviridae,Norovirus,Norwalk virus
—
AB541304

4/Nagan02/2008/JP

Norovirus Hu/GII-
NC_001959
vertebrates,human
1
Caliciviridae,Norovirus,Norwalk virus
—
AB541305

4/Nagano3/2007/JP

Norovirus Hu/GII-
NC_001959
vertebrates,human
1
Caliciviridae,Norovirus,Norwalk virus
—
AB541306

4/Nagan03/2008/JP

Norovirus Hu/GII-
NC_001959
vertebrates,human
1
Caliciviridae,Norovirus,Norwalk virus
—
AB541307

4/Nagan04/2008/JP

Norovirus Hu/GII-
NC_001959
vertebrates,human
1
Caliciviridae,Norovirus,Norwalk virus
—
AB541308

4/Nagano5/2007/JP

Norovirus Hu/GII-
NC_001959
vertebrates,human
1
Caliciviridae,Norovirus,Norwalk virus
—
AB541309

4/Niigata1/2007/JP

Norovirus Hu/GII-
NC_001959
vertebrates,human
1
Caliciviridae,Norovirus,Norwalk virus
—
AB541310

4/Niigata1/2008/JP

Norovirus Hu/GII-
NC_001959
vertebrates,human
1
Caliciviridae,Norovirus,Norwalk virus
—
AB541311

4/Niigata2/2007/JP

Norovirus Hu/GII-
NC_001959
vertebrates,human
1
Caliciviridae,Norovirus,Norwalk virus
—
AB541312

4/Niigata2/2008/JP

Norovirus Hu/GII-
NC_001959
vertebrates,human
1
Caliciviridae,Norovirus,Norwalk virus
—
AB541313

4/Niigata3/2007/JP

Norovirus Hu/GII-
NC_001959
vertebrates,human
1
Caliciviridae,Norovirus,Norwalk virus
—
AB541314

4/Niigata3/2008/JP

Norovirus Hu/GII-
NC_001959
vertebrates,human
1
Caliciviridae,Norovirus,Norwalk virus
—
AB541315

4/Niigata4/2007/JP

Norovirus Hu/GII-
NC_001959
vertebrates,human
1
Caliciviridae,Norovirus,Norwalk virus
—
AB541316

4/Niigata4/2008/JP

Norovirus Hu/GII-
NC_001959
vertebrates,human
1
Caliciviridae,Norovirus,Norwalk virus
—
AB541317

4/Niigata5/2007/JP

Norovirus Hu/GII-
NC_001959
vertebrates,human
1
Caliciviridae,Norovirus,Norwalk virus
—
AB541318

4/Niigata5/2008/JP

Norovirus Hu/GII-
NC_001959
vertebrates,human
1
Caliciviridae,Norovirus,Norwalk virus
—
AB541319

4/0saka1/2007/JP

Norovirus Hu/GII-
NC_001959
vertebrates,human
1
Caliciviridae,Norovirus,Norwalk virus
—
AB541320

4/0saka1/2008/JP

Norovirus Hu/GII-
NC_001959
vertebrates,human
1
Caliciviridae,Norovirus,Norwalk virus
—
AB541321

4/05aka2/2007/JP

Norovirus Hu/GII-
NC_001959
vertebrates,human
1
Caliciviridae,Norovirus,Norwalk virus
—
AB541322

4/05aka2/2008/JP

Norovirus Hu/GII-
NC_001959
vertebrates,human
1
Caliciviridae,Norovirus,Norwalk virus
—
AB541323

4/05aka3/2007/JP

Norovirus Hu/GII-
NC_001959
vertebrates,human
1
Caliciviridae,Norovirus,Norwalk virus
—
AB541324

4/05aka3/2008/JP

Norovirus Hu/GII-
NC_001959
vertebrates,human
1
Caliciviridae,Norovirus,Norwalk virus
—
AB541325

4/05aka4/2007/JP

Norovirus Hu/GII-
NC_001959
vertebrates,human
1
Caliciviridae,Norovirus,Norwalk virus
—
AB541326

4/05aka4/2008/JP

Norovirus Hu/GII-
NC_001959
vertebrates,human
1
Caliciviridae,Norovirus,Norwalk virus
—
AB541327

4/05aka5/2007/JP

Norovirus Hu/GII-
NC_001959
vertebrates,human
1
Caliciviridae,Norovirus,Norwalk virus
—
AB541328

4/0saka5/2008/JP

Norovirus Hu/GII-
NC_001959
vertebrates,human
1
Caliciviridae,Norovirus,Norwalk virus
—
AB541329

4/0saka6/2008/JP

Norovirus Hu/GII-
NC_001959
vertebrates,human
1
Caliciviridae,Norovirus,Norwalk virus
—
AB447456

4/Saga1/2006/JP

Norovirus Hu/GII-
NC_001959
vertebrates,human
1
Caliciviridae,Norovirus,Norwalk virus
—
AB541330

4/Saga1/2007/JP

Norovirus Hu/GII-
NC_001959
vertebrates,human
1
Caliciviridae,Norovirus,Norwalk virus
—
AB541331

4/Saga1/2008/JP

Norovirus Hu/GII-
NC_001959
vertebrates,human
1
Caliciviridae,Norovirus,Norwalk virus
—
AB541332

4/Saga2/2007/JP

Norovirus Hu/GII-
NC_001959
vertebrates,human
1
Caliciviridae,Norovirus,Norwalk virus
—
AB541333

4/Saga2/2008/JP

Norovirus Hu/GII-
NC_001959
vertebrates,human
1
Caliciviridae,Norovirus,Norwalk virus
—
AB541334

4/Saga3/2008/JP

Norovirus Hu/GII-
NC_001959
vertebrates,human
1
Caliciviridae,Norovirus,Norwalk virus
—
AB447457

4/Saga4/2006/JP

Norovirus Hu/GII-
NC_001959
vertebrates,human
1
Caliciviridae,Norovirus,Norwalk virus
—
AB541335

4/Saga4/2007/JP

Norovirus Hu/GII-
NC_001959
vertebrates,human
1
Caliciviridae,Norovirus,Norwalk virus
—
AB541336

4/Saga4/2008/JP

Norovirus Hu/GII-
NC_001959
vertebrates,human
1
Caliciviridae,Norovirus,Norwalk virus
—
AB447458

4/Saga5/2006/JP

Norovirus Hu/GII-
NC_001959
vertebrates,human
1
Caliciviridae,Norovirus,Norwalk virus
—
AB541337

4/Saga5/2007/JP

Norovirus Hu/GII-
NC_001959
vertebrates,human
1
Caliciviridae,Norovirus,Norwalk virus
—
AB541338

4/Saga5/2008/JP

Norovirus Hu/GII-
NC_001959
vertebrates,human
1
Caliciviridae,Norovirus,Norwalk virus
—
AB541339

4/Sakai 1/2007/JP

Norovirus H u/GII-
NC_001959
vertebrates,human
1
Caliciviridae,Norovirus,Norwalk virus
—
AB541340

4/Sakai 1/2008/JP

Norovirus H u/GII-
NC_001959
vertebrates,human
1
Caliciviridae,Norovirus,Norwalk virus
—
AB447448

4/Sakai2/2006/JP

Norovirus H u/GII-
NC_001959
vertebrates,human
1
Caliciviridae,Norovirus,Norwalk virus

AB541341

4/Sakai2/2007/JP

Norovirus H u/GII-
NC_001959
vertebrates,human
1
Caliciviridae,Norovirus,Norwalk virus
—
AB447449

4/Sakai3/2006/JP

Norovirus H u/GII-
NC_001959
vertebrates,human
1
Caliciviridae,Norovirus,Norwalk virus
—
AB541342

4/Sakai3/2007/JP

Norovirus H u/GII-
NC_001959
vertebrates,human
1
Caliciviridae,Norovirus,Norwalk virus
—
AB541343

4/Sakai3/2008/JP

Norovirus H u/GII-
NC_001959
vertebrates,human
1
Caliciviridae,Norovirus,Norwalk virus
—
AB447450

4/Sakai4/2006/JP

Norovirus H u/GII-
NC_001959
vertebrates,human
1
Caliciviridae,Norovirus,Norwalk virus
—
AB541344

4/Sakai4/2007/JP

Norovirus H u/GII-
NC_001959
vertebrates,human
1
Caliciviridae,Norovirus,Norwalk virus
—
AB541345

4/Sakai4/2008/JP

Norovirus H u/GII-
NC_001959
vertebrates,human
1
Caliciviridae,Norovirus,Norwalk virus
—
AB541346

4/Shimane1/2007/JP

Norovirus H u/GII-
NC_001959
vertebrates,human
1
Caliciviridae,Norovirus,Norwalk virus
—
AB541347

4/Shimane2/2007/JP

Norovirus H u/GII-
NC_001959
vertebrates,human
1
Caliciviridae,Norovirus,Norwalk virus
—
AB541349

4/Shimane3/2007/JP

Norovirus H u/GII-
NC_001959
vertebrates,human
1
Caliciviridae,Norovirus,Norwalk virus
—
AB541350

4/Shimane3/2008/JP

Norovirus H u/GII-
NC_001959
vertebrates,human
1
Caliciviridae,Norovirus,Norwalk virus
—
AB541351

4/Shimane4/2007/JP

Norovirus H u/GII-
NC_001959
vertebrates,human
1
Caliciviridae,Norovirus,Norwalk virus
—
AB541352

4/Shimane5/2007/JP

Norovirus H u/GII-
NC_001959
vertebrates,human
1
Caliciviridae,Norovirus,Norwalk virus
—
AB541353

4/Shimane5/2008/JP

Norovirus H u/GII-
NC_001959
vertebrates,human
1
Caliciviridae,Norovirus,Norwalk virus
—
AB447443

4/Toyama1/2006/JP

Norovirus H u/GII-
NC_001959
vertebrates,human
1
Caliciviridae,Norovirus,Norwalk virus
—
AB541354

4/Toyama1/2007/JP

Norovirus H u/GII-
NC_001959
vertebrates,human
1
Caliciviridae,Norovirus,Norwalk virus
—
AB541355

4/Toyama2/2007/JP

Norovirus H u/GII-
NC_001959
vertebrates,human
1
Caliciviridae,Norovirus,Norwalk virus
—
AB541356

4/Toyama2/2008/JP

Norovirus H u/GII-
NC_001959
vertebrates,human
1
Caliciviridae,Norovirus,Norwalk virus
—
AB541357

4/Toyama3/2007/JP

Norovirus H u/GII-
NC_001959
vertebrates,human
1
Caliciviridae,Norovirus,Norwalk virus
—
AB541358

4/Toyama3/2008/JP

Norovirus H u/GII-
NC_001959
vertebrates,human
1
Caliciviridae,Norovirus,Norwalk virus
—
AB447444

4/Toyama4/2006/JP

Norovirus H u/GII-
NC_001959
vertebrates,human
1
Caliciviridae,Norovirus,Norwalk virus
—
AB541359

4/Toyama4/2007/JP

Norovirus H u/GII-
NC_001959
vertebrates,human
1
Caliciviridae,Norovirus,Norwalk virus
—
AB541360

4/Toyama4/2008/JP

Norovirus H u/GII-
NC_001959
vertebrates,human
1
Caliciviridae,Norovirus,Norwalk virus
—
AB447445

4/Toyama5/2006/JP

Norovirus H u/GII-
NC_001959
vertebrates,human
1
Caliciviridae,Norovirus,Norwalk virus
—
AB541361

4/Toyama5/2007/JP

Norovirus H u/GII-
NC_001959
vertebrates,human
1
Caliciviridae,Norovirus,Norwalk virus
—
AB541362

4/Toyama5/2008/JP

Norovirus Hu/G11,12/
NC_001959
vertebrates,human
1
Caliciviridae,Norovirus,Norwalk virus
—
HQ664990

HS206/2010/USA

Norovirus Hu/G11,12/
NC_001959
vertebrates,human
1
Caliciviridae,Norovirus,Norwalk virus
—
HQ449728

HS210/2010/USA

Norovirus Hu/GII,3/
NC_001959
vertebrates,human
1
Caliciviridae,Norovirus,Norwalk virus
—
GU980585

C BN U1/2006/K0R

Norovirus Hu/GII,3/
NC_001959
vertebrates,human
1
Caliciviridae,Norovirus,Norwalk virus
—
KF306213

Jingzhou/

2013402/CHN

Norovirus
NC_001959
vertebrates,human
1
Caliciviridae,Norovirus,Norwalk virus
—
JQ798158

Hu/GII,4/5M/USA/2004

Norovirus
NC_001959
vertebrates,human
1
Caliciviridae,Norovirus,Norwalk virus
—
GQ845369

Hu/GII,4/Armidale/

NSW390I/2008/AU

Norovirus
NC_001959
vertebrates,human
1
Caliciviridae,Norovirus,Norwalk virus
—
HM748971

Hu/G11,4/Beecroft/

NSW305P/2009/AUS

Norovirus Hu/G II ,4/
NC_001959
vertebrates,human
1
Caliciviridae,Norovirus,Norwalk virus
—
FJ537135

CH DC2094/1974/

US

Norovirus Hu/G II ,4/
NC_001959
vertebrates,human
1
Caliciviridae,Norovirus,Norwalk virus
—
FJ537136

CH DC3967/1988/

US

Norovirus
NC_001959
vertebrates,human
1
Caliciviridae,Norovirus,Norwalk virus
—
FJ537137

Hu/GII,4/CHDC4108/1987/

US

Norovirus
NC_001959
vertebrates,human
1
Caliciviridae,Norovirus,Norwalk virus
—
FJ537138

Hu/GII,4/CHDC4871/1977/

US

Norovirus
NC_001959
vertebrates,human
1
Caliciviridae,Norovirus,Norwalk virus
—
FJ537134

Hu/GII,4/CHDC5191/1974/

US

Norovirus
NC_001959
vertebrates,human
1
Caliciviridae,Norovirus,Norwalk virus
—
JXQ23286

Hu/GII,4/CHDC5191/1974/

USA

Norovirus
NC_001959
vertebrates,human
1
Caliciviridae,Norovirus,Norwalk virus
—
KC576912

Hu/GII,4/GP13111/2011/

USA

Norovirus
NC_001959
vertebrates,human
1
Caliciviridae,Norovirus,Norwalk virus
—
KC576909

Hu/GII,4/GP2411/2011/

USA

Norovirus
NC_001959
vertebrates,human
1
Caliciviridae,Norovirus,Norwalk virus
—
GU325839

Hu/GII,4/HS194/2009/US

Norovirus
NC_001959
vertebrates,human
1
Caliciviridae,Norovirus,Norwalk virus
—
DQ078814

Hu/G11,4/Hunter504D/

040/AU

Norovirus Hu/GII,4/JB-
NC_001959
vertebrates,human
1
Caliciviridae,Norovirus,Norwalk virus
—
HQ009513

15/KOR/2008

Norovirus
NC_001959
vertebrates,human
1
Caliciviridae,Norovirus,Norwalk virus
—
KC577174

Hu/GII,4/Jiangsu1/2011/

CHN

Norovirus
NC_001959
vertebrates,human
1
Caliciviridae,Norovirus,Norwalk virus
—
KC577175

Hu/GII,4/Jiangsu2/2012/

CHN

Norovirus
NC_001959
vertebrates,human
1
Caliciviridae,Norovirus,Norwalk virus
—
KF306214

Hu/GII,4/Jingzhou/

2013403/CHN

Norovirus
NC_001959
vertebrates,human
1
Caliciviridae,Norovirus,Norwalk virus
—
EF187497

Hu/GII,4/Kenepuru/

NZ327/2006/NZL

Norovirus Hu/GII,4/MD-
NC_001959
vertebrates,human
1
Caliciviridae,Norovirus,Norwalk virus
—
DQ658413

2004/2004/US

Norovirus
NC_001959
vertebrates,human
1
Caliciviridae,Norovirus,Norwalk virus
—
KF712499

Hu/GII,4/NIHIC1,16/

2012/USA

Norovirus
NC_001959
vertebrates,human
1
Caliciviridae,Norovirus,Norwalk virus
—
KF712504

Hu/GII,4/NIHIC11,3/

2013/USA

Norovirus
NC_001959
vertebrates,human
1
Caliciviridae,Norovirus,Norwalk virus
—
KF712501

Hu/GII,4/NIHIC17,6/

2012/USA

Norovirus
NC_001959
vertebrates,human
1
Caliciviridae,Norovirus,Norwalk virus
—
KF712491

Hu/GII,4/NIHIC17,8/

2013/USA

Norovirus
NC_001959
vertebrates,human
1
Caliciviridae,Norovirus,Norwalk virus
—
KF712498

Hu/GII,4/NIHIC17,9/

2013/USA

Norovirus
NC_001959
vertebrates,human
1
Caliciviridae,Norovirus,Norwalk virus
—
KF712510

Hu/GII,4/NIHIC2,2/

2010/USA

Norovirus
NC_001959
vertebrates,human
1
Caliciviridae,Norovirus,Norwalk virus
—
KF712496

Hu/GII,4/NIHIC2,3/

2010/USA

Norovirus
NC_001959
vertebrates,human
1
Caliciviridae,Norovirus,Norwalk virus
—
KF712497

Hu/GII,4/NIHIC27,2/

2012/USA

Norovirus
NC_001959
vertebrates,human
1
Caliciviridae,Norovirus,Norwalk virus
—
KF712508

Hu/GII,4/NIHIC28,6/

2012/USA

Norovirus
NC_001959
vertebrates,human
1
Caliciviridae,Norovirus,Norwalk virus
—
KF712502

Hu/GII,4/NIHIC35/

2013/USA

Norovirus
NC_001959
vertebrates,human
1
Caliciviridae,Norovirus,Norwalk virus
—
JQ613552

H u/G II ,4/N SW

123B/2010/AU

Norovirus Hu/GII,4/New
NC_001959
vertebrates,human
1
Caliciviridae,Norovirus,Norwalk virus
—
GU445325

Orleans1805/2009/USA

Norovirus
NC_001959
vertebrates,human
1
Caliciviridae,Norovirus,Norwalk virus
—
JX126913

Hu/G11,4/Ohio/7G/

2012/USA

Norovirus Hu/G11,4/
NC_001959
vertebrates,human
1
Caliciviridae,Norovirus,Norwalk virus
—
JX126912

Ohio/71/2012/USA

Norovirus
NC_001959
vertebrates,human
1
Caliciviridae,Norovirus,Norwalk virus
—
GQ845367

Hu/G11,4/Orange/

NSW001P/2008/AU

Norovirus 87R/2007/
NC_001959
vertebrates,human
1
Caliciviridae,Norovirus,Norwalk virus
—
GQ845024

Hu/GII,4/Rathmines/NSW2

AUS

Norovirus Hu/GII,4/
NC_001959
vertebrates,human
1
Caliciviridae,Norovirus,Norwalk virus
—
EF684915

Shellharbour/NSW

696T/2006/AUS

Norovirus Hu/GII,4/
NC_001959
vertebrates,human
1
Caliciviridae,Norovirus,Norwalk virus
—
GQ845368

Sutherland/NSW5

05G/2007/AUS

Norovirus Hu/G II ,4/
NC_001959
vertebrates,human
1
Caliciviridae,Norovirus,Norwalk virus
—
HM748972

Teralba/NSW881Z/

2009/AUS

Norovirus
NC_001959
vertebrates,human
1
Caliciviridae,Norovirus,Norwalk virus
—
HM748973

Hu/GII,4/Turramurra/

NSW892U/2009/AUS

Norovirus Hu/GII,4/
NC_001959
vertebrates,human
1
Caliciviridae,Norovirus,Norwalk virus
—
GQ845366

Westmead/NSW3

639/2008/AUS

Norovirus
NC_001959
vertebrates,human
1
Caliciviridae,Norovirus,Norwalk virus
—
KF712509

Hu/GII,6/NIHIC34,1/

2013/USA

Norovirus Hu/GII,e-
NC_001959
vertebrates,human
1
Caliciviridae,Norovirus,Norwalk virus
—
GQ845370

GII,12/StGeorge/

199U

NSW/2008/AU

Norovirus
NC_001959
vertebrates,human
1
Caliciviridae,Norovirus,Norwalk virus
—
JQ911595

Hu/GII/10002/2009/VNM

Norovirus
NC_001959
vertebrates,human
1
Caliciviridae,Norovirus,Norwalk virus
—
JQ911596

Hu/GII/10003/2009/VNM

Norovirus
NC_001959
vertebrates,human
1
Caliciviridae,Norovirus,Norwalk virus
—
JQ911597

Hu/GII/10012/2009/VNM

Norovirus
NC_001959
vertebrates,human
1
Caliciviridae,Norovirus,Norwalk virus
—
JQ911598

Hu/GII/10037/2009/VNM

Norovirus
NC_001959
vertebrates,human
1
Caliciviridae,Norovirus,Norwalk virus
—
KC409238

Hu/GII/10101/2009/VNM

Norovirus
NC_001959
vertebrates,human
1
Caliciviridae,Norovirus,Norwalk virus
—
KC409239

Hu/GII/10127/2009/VNM

Norovirus
NC_001959
vertebrates,human
1
Caliciviridae,Norovirus,Norwalk virus
—
KC409240

Hu/GII/10370/2010/VNM

Norovirus
NC_001959
vertebrates,human
1
Caliciviridae,Norovirus,Norwalk virus
—
KC409241

Hu/GII/10405/2010/VNM

Norovirus
NC_001959
vertebrates,human
1
Caliciviridae,Norovirus,Norwalk virus
—
KC409242

Hu/GII/10406/2010/VNM

Norovirus
NC_001959
vertebrates,human
1
Caliciviridae,Norovirus,Norwalk virus
—
KC409243

Hu/GII/10411/2010/VNM

Norovirus
NC_001959
vertebrates,human
1
Caliciviridae,Norovirus,Norwalk virus
—
KC409244

Hu/GII/10420/2010/VNM

Norovirus
NC_001959
vertebrates,human
1
Caliciviridae,Norovirus,Norwalk virus
—
KC409245

Hu/GII/20048/2009/VNM

Norovirus
NC_001959
vertebrates,human
1
Caliciviridae,Norovirus,Norwalk virus
—
KC409246

Hu/GII/20064/2009/VNM

Norovirus
NC_001959
vertebrates,human
1
Caliciviridae,Norovirus,Norwalk virus
—
KC409247

Hu/GII/20079/2009/VNM

Norovirus
NC_001959
vertebrates,human
1
Caliciviridae,Norovirus,Norwalk virus
—
KC409248

Hu/GII/20107/2009/VNM

Norovirus
NC_001959
vertebrates,human
1
Caliciviridae,Norovirus,Norwalk virus
—
KC409249

Hu/GII/20108/2009/VNM

Norovirus
NC_001959
vertebrates,human
1
Caliciviridae,Norovirus,Norwalk virus
—
KC409250

Hu/GII/20144/2009/VNM

Norovirus
NC_001959
vertebrates,human
1
Caliciviridae,Norovirus,Norwalk virus
—
KC409251

Hu/GII/20146/2009/VNM

Norovirus
NC_001959
vertebrates,human
1
Caliciviridae,Norovirus,Norwalk virus
—
KC409252

Hu/GII/20150/2009/VNM

Norovirus
NC_001959
vertebrates,human
1
Caliciviridae,Norovirus,Norwalk virus
—
KC409253

Hu/GII/20151/2009/VNM

Norovirus
NC_001959
vertebrates,human
1
Caliciviridae,Norovirus,Norwalk virus
—
KC409254

Hu/GII/20153/2009/VNM

Norovirus
NC_001959
vertebrates,human
1
Caliciviridae,Norovirus,Norwalk virus
—
KC409255

Hu/GII/20154/2009/VNM

Norovirus
NC_001959
vertebrates,human
1
Caliciviridae,Norovirus,Norwalk virus
—
KC409256

Hu/GII/20156/2009/VNM

Norovirus
NC_001959
vertebrates,human
1
Caliciviridae,Norovirus,Norwalk virus
—
KC409257

Hu/GII/20159/2009/VNM

Norovirus
NC_001959
vertebrates,human
1
Caliciviridae,Norovirus,Norwalk virus
—
KC409258

Hu/GII/20161/2009/VNM

Norovirus
NC_001959
vertebrates,human
1
Caliciviridae,Norovirus,Norwalk virus
—
KC409259

Hu/GII/20162/2009/VNM

Norovirus
NC_001959
vertebrates,human
1
Caliciviridae,Norovirus,Norwalk virus
—
KC409260

Hu/GII/20164/2009/VNM

Norovirus
NC_001959
vertebrates,human
1
Caliciviridae,Norovirus,Norwalk virus
—
KC409261

Hu/GII/20171/2009/VNM

Norovirus
NC_001959
vertebrates,human
1
Caliciviridae,Norovirus,Norwalk virus
—
KC409262

Hu/GII/20172/2009/VNM

Norovirus
NC_001959
vertebrates,human
1
Caliciviridae,Norovirus,Norwalk virus
—
KC409263

Hu/GII/20173/2009/VNM

Norovirus
NC_001959
vertebrates,human
1
Caliciviridae,Norovirus,Norwalk virus
—
KC409264

Hu/GII/20176/2009/VNM

Norovirus
NC_001959
vertebrates,human
1
Caliciviridae,Norovirus,Norwalk virus
—
KC409265

Hu/GII/20180/2009/VNM

Norovirus
NC_001959
vertebrates,human
1
Caliciviridae,Norovirus,Norwalk virus
—
KC409266

Hu/GII/20182/2009/VNM

Norovirus
NC_001959
vertebrates,human
1
Caliciviridae,Norovirus,Norwalk virus
—
KC409267

Hu/GII/20184/2009/VNM

Norovirus
NC_001959
vertebrates,human
1
Caliciviridae,Norovirus,Norwalk virus
—
KC409268

Hu/GII/20185/2009/VNM

Norovirus
NC_001959
vertebrates,human
1
Caliciviridae,Norovirus,Norwalk virus
—
KC409269

Hu/GII/20187/2009/VNM

Norovirus
NC_001959
vertebrates,human
1
Caliciviridae,Norovirus,Norwalk virus
—
KC409270

Hu/GII/20189/2009/VNM

Norovirus
NC_001959
vertebrates,human
1
Caliciviridae,Norovirus,Norwalk virus
—
KC409271

Hu/GII/20190/2009/VNM

Norovirus
NC_001959
vertebrates,human
1
Caliciviridae,Norovirus,Norwalk virus
—
KC409272

Hu/GII/20192/2009/VNM

Norovirus
NC_001959
vertebrates,human
1
Caliciviridae,Norovirus,Norwalk virus
—
KC409273

Hu/GII/20196/2009/VNM

Norovirus
NC_001959
vertebrates,human
1
Caliciviridae,Norovirus,Norwalk virus
—
KC409274

Hu/GII/20198/2009/VNM

Norovirus
NC_001959
vertebrates,human
1
Caliciviridae,Norovirus,Norwalk virus
—
KC409275

Hu/GII/20202/2009/VNM

Norovirus
NC_001959
vertebrates,human
1
Caliciviridae,Norovirus,Norwalk virus
—
KC409276

Hu/GII/20205/2009/VNM

Norovirus
NC_001959
vertebrates,human
1
Caliciviridae,Norovirus,Norwalk virus
—
KC409277

Hu/GII/20206/2009/VNM

Norovirus
NC_001959
vertebrates,human
1
Caliciviridae,Norovirus,Norwalk virus
—
KC409278

Hu/GII/20208/2009/VNM

Norovirus
NC_001959
vertebrates,human
1
Caliciviridae,Norovirus,Norwalk virus
—
KC409279

Hu/GII/20215/2009/VNM

Norovirus
NC_001959
vertebrates,human
1
Caliciviridae,Norovirus,Norwalk virus
—
KC409280

Hu/GII/20217/2009/VNM

Norovirus
NC_001959
vertebrates,human
1
Caliciviridae,Norovirus,Norwalk virus
—
KC409281

Hu/GII/20229/2009/VNM

Norovirus
NC_001959
vertebrates,human
1
Caliciviridae,Norovirus,Norwalk virus
—
KC409282

Hu/GII/20230/2009/VNM

Norovirus
NC_001959
vertebrates,human
1
Caliciviridae,Norovirus,Norwalk virus
—
KC409283

Hu/GII/20233/2009/VNM

Norovirus
NC_001959
vertebrates,human
1
Caliciviridae,Norovirus,Norwalk virus
—
KC409284

Hu/GII/20248/2009/VNM

Norovirus
NC_001959
vertebrates,human
1
Caliciviridae,Norovirus,Norwalk virus
—
KC409285

Hu/GII/20258/2009/VNM

Norovirus
NC_001959
vertebrates,human
1
Caliciviridae,Norovirus,Norwalk virus
—
KC409286

Hu/GII/20263/2009/VNM

Norovirus
NC_001959
vertebrates,human
1
Caliciviridae,Norovirus,Norwalk virus
—
KC409287

Hu/GII/20271/2009/VNM

Norovirus
NC_001959
vertebrates,human
1
Caliciviridae,Norovirus,Norwalk virus
—
KC409288

Hu/GII/20276/2009/VNM

Norovirus
NC_001959
vertebrates,human
1
Caliciviridae,Norovirus,Norwalk virus
—
KC409289

Hu/GII/20302/2009/VNM

Norovirus
NC_001959
vertebrates,human
1
Caliciviridae,Norovirus,Norwalk virus
—
KC409290

Hu/GII/20344/2009/VNM

Norovirus
NC_001959
vertebrates,human
1
Caliciviridae,Norovirus,Norwalk virus
—
KC409291

Hu/GII/20350/2009/VNM

Norovirus
NC_001959
vertebrates,human
1
Caliciviridae,Norovirus,Norwalk virus
—
KC409292

Hu/GII/20357/2009/VNM

Norovirus
NC_001959
vertebrates,human
1
Caliciviridae,Norovirus,Norwalk virus
—
KC409293

Hu/GII/20365/2010/VNM

Norovirus
NC_001959
vertebrates,human
1
Caliciviridae,Norovirus,Norwalk virus
—
KC409294

Hu/GII/20373/2010/VNM

Norovirus
NC_001959
vertebrates,human
1
Caliciviridae,Norovirus,Norwalk virus
—
KC409295

Hu/GII/20407/2010/VNM

Norovirus
NC_001959
vertebrates,human
1
Caliciviridae,Norovirus,Norwalk virus
—
KC409296

Hu/GII/20413/2010/VNM

Norovirus
NC_001959
vertebrates,human
1
Caliciviridae,Norovirus,Norwalk virus
—
KC409297

Hu/GII/20424/2010/VNM

Norovirus
NC_001959
vertebrates,human
1
Caliciviridae,Norovirus,Norwalk virus
—
KC409298

Hu/GII/20448/2010/VNM

Norovirus
NC_001959
vertebrates,human
1
Caliciviridae,Norovirus,Norwalk virus
—
KC409299

Hu/GII/20457/2010/VNM

Norovirus
NC_001959
vertebrates,human
1
Caliciviridae,Norovirus,Norwalk virus
—
KC409300

Hu/GII/20460/2010/VNM

Norovirus
NC_001959
vertebrates,human
1
Caliciviridae,Norovirus,Norwalk virus
—
KC409301

Hu/GII/20469/2010/VNM

Norovirus
NC_001959
vertebrates,human
1
Caliciviridae,Norovirus,Norwalk virus
—
KC409302

Hu/GII/20477/2010/VNM

Norovirus
NC_001959
vertebrates,human
1
Caliciviridae,Norovirus,Norwalk virus
—
KC409303

Hu/GII/20478/2010/VNM

Norovirus
NC_001959
vertebrates,human
1
Caliciviridae,Norovirus,Norwalk virus
—
KC409304

Hu/GII/30017/2009/VNM

Norovirus
NC_001959
vertebrates,human
1
Caliciviridae,Norovirus,Norwalk virus
—
KC409305

Hu/GII/30026/2009/VNM

Norovirus
NC_001959
vertebrates,human
1
Caliciviridae,Norovirus,Norwalk virus
—
KC409306

Hu/GII/30040/2009/VNM

Norovirus
NC_001959
vertebrates,human
1
Caliciviridae,Norovirus,Norwalk virus
—
KC409307

Hu/GII/30045/2009/VNM

Norovirus
NC_001959
vertebrates,human
1
Caliciviridae,Norovirus,Norwalk virus
—
KC409309

Hu/GII/30113/2009/VNM

Norovirus
NC_001959
vertebrates,human
1
Caliciviridae,Norovirus,Norwalk virus
—
KC409310

Hu/GII/30129/2009/VNM

Norovirus
NC_001959
vertebrates,human
1
Caliciviridae,Norovirus,Norwalk virus
—
KC409311

Hu/GII/30199/2009/VNM

Norovirus
NC_001959
vertebrates,human
1
Caliciviridae,Norovirus,Norwalk virus
—
KC409312

Hu/GII/30201/2009/VNM

Norovirus
NC_001959
vertebrates,human
1
Caliciviridae,Norovirus,Norwalk virus
—
KC409313

Hu/GII/30206/2009/VNM

Norovirus
NC_001959
vertebrates,human
1
Caliciviridae,Norovirus,Norwalk virus
—
KC409315

Hu/GII/30211/2009/VNM

Norovirus
NC_001959
vertebrates,human
1
Caliciviridae,Norovirus,Norwalk virus
—
KC409316

Hu/GII/30212/2009/VNM

Norovirus
NC_001959
vertebrates,human
1
Caliciviridae,Norovirus,Norwalk virus
—
KC409318

Hu/GII/30266/2009/VNM

Norovirus
NC_001959
vertebrates,human
1
Caliciviridae,Norovirus,Norwalk virus
—
GU594162

Hu/G11/8610/Saga/

2008/JPN

Norovirus
NC_001959
vertebrates,human
1
Caliciviridae,Norovirus,Norwalk virus
—
DQ415279

Hu/GII/Carlow/2002/Ire

Norovirus
NC_001959
vertebrates,human
1
Caliciviridae,Norovirus,Norwalk virus
—
DQ369797

Hu/Guangzhou/

NVgz01/CHN

Norovirus
NC_001959
vertebrates,human
1
Caliciviridae,Norovirus,Norwalk virus
—
EU310927

Hu/Houston/TCH186/

2002/US

Norovirus
NC_001959
vertebrates,human
1
Caliciviridae,Norovirus,Norwalk virus
—
DQ456824

Hu/MK04/2004/JP

Norovirus
NC_001959
vertebrates,human
1
Caliciviridae,Norovirus,Norwalk virus
—
AY741811

Hu/NLV/Dresden174/pUS-

Nor11/1997/GE

Norovirus
NC_001959
vertebrates,human
1
Caliciviridae,Norovirus,Norwalk virus
—
AY772730

Hu/NLV/GII/

Neustrelitz260/2000/DE

Norovirus
NC_001959
vertebrates,human
1
Caliciviridae,Norovirus,Norwalk virus
—
AY587989

Hu/NLV/Oxford/

B2S16/2002/UK

Norovirus
NC_001959
vertebrates,human
1
Caliciviridae,Norovirus,Norwalk virus
—
AY587988

Hu/NLV/Oxford/

B4S1/2002/UK

Norovirus
NC_001959
vertebrates,human
1
Caliciviridae,Norovirus,Norwalk virus
—
AY587983

Hu/NLV/Oxford/

B452/2002/UK

Norovirus
NC_001959
vertebrates,human
1
Caliciviridae,Norovirus,Norwalk virus
—
AY587986

Hu/NLV/Oxford/

B454/2002/UK

Norovirus
NC_001959
vertebrates,human
1
Caliciviridae,Norovirus,Norwalk virus
—
AY587984

Hu/NLV/Oxford/

B455/2002/UK

Norovirus
NC_001959
vertebrates,human
1
Caliciviridae,Norovirus,Norwalk virus
—
AY587985

Hu/NLV/Oxford/

B456/2002/UK

Norovirus
NC_001959
vertebrates,human
1
Caliciviridae,Norovirus,Norwalk virus
—
AY587987

Hu/NLV/Oxford/

B457/2002/UK

Norovirus
NC_001959
vertebrates,human
1
Caliciviridae,Norovirus,Norwalk virus
—
DQ366347

Hu/OsakaNI/2004/JP

Norovirus
NC_001959
vertebrates,human
1
Caliciviridae,Norovirus,Norwalk virus
—
EU921344

Hu/Pune/PC15/2006/India

—

Norovirus
NC_001959
vertebrates,human
1
Caliciviridae,Norovirus,Norwalk virus
—
EU921388

Hu/Pune/PC51/2007/India

—

Norovirus
NC_001959
vertebrates,human
1
Caliciviridae,Norovirus,Norwalk virus
—
EU921389

Hu/Pune/PC52/2007/India

Norovirus
NC_001959
vertebrates,human
1
Caliciviridae,Norovirus,Norwalk virus
—
AB365435

Hu/Texas/TCHQ4-

577/2004/US

Norovirus genogroup 2
NC_001959
vertebrates,human
2
Caliciviridae,Norovirus,Norwalk virus
—
AY502020,AY502023

Norovirus genogroup 3
NC_001959
vertebrates,human
1
Caliciviridae,Norovirus,Norwalk virus
—
JX145650

Norovirus
NC_001959
vertebrates,human
1
Caliciviridae,Norovirus,Norwalk virus
—
EU854589

mouse/Hannover1/2007/D

EU

Norovirus
NC_001959
vertebrates,human
1
Caliciviridae,Norovirus,Norwalk virus
—
HQ392821

pig/GII/Ch6/China/2009

Norovirus swine/GII/OH-
NC_001959
vertebrates,human
1
Caliciviridae,Norovirus,Norwalk virus
—
AY823305

QW 125/03/US

North American arenavirus
NC_010700
vertebrates,human
3
Arenaviridae,Arenavirus,Whitewater Arroyo
seg. S
EU123331,EU123330

virus

,EU123329

Norwalk virus
NC_001959
vertebrates,human
3
Caliciviridae,Norovirus,Norwalk virus
—
AF093797,AF504671,

M87661

Norwalk-like virus
NC_001959
vertebrates,human
17
Caliciviridae,Norovirus,Norwalk virus
—
AB039780,AB083780

,AB039782,AB03977

9,AY126474,AB0397

77,AB044366,AB126

320,AB039776,AB08

3781,AB081723,AB0

45603,AB039774,AB

039778,AB084071,A

B039781,AB039775

Oliveros virus
NC_010248
vertebrates,human
1
Arenaviridae,Arenavirus,Oliveros virus
seg. S
U34248

Oliveros virus
NC_010250
vertebrates,human
1
Arenaviridae,Arenavirus,Oliveros virus
seg. L
AY216514

Oran virus
NC_003466
vertebrates,human
1
Bunyaviridae,Hantavirus,Andes virus
seg. S
AF482715

Oran virus
NC_003467
vertebrates,human
1
Bunyaviridae,Hantavirus,Andes virus
seg.
AF028024

M

Orangutan hepadnavirus
NC_003977
vertebrates,human
2
Hepadnaviridae,Orthohepadnavirus,Hepatitis
—
AF193863,AF193864

B virus

Parainfluenza virus 5
NC_006430
vertebrates,human
13
Paramyxoviridae,Rubulavirus,Parainfluenza
—
JQ743322,JQ743319,

virus 5

JQ743321,KC852177

,JQ743327,JQ743328

,JQ743318,JQ743325

,JQ743324,JQ743323

,AF052755,JQ743326

,JQ743320

Parana virus
NC_010756
vertebrates,human
2
Arenaviridae,Arenavirus,Parana virus
seg. S
AF485261,AF512829

Parana virus
NC_010761
vertebrates,human
1
Arenaviridae,Arenavirus,Parana virus
seg. L
EU627613

Pergamino virus
NC_003466
vertebrates,human
1
Bunyaviridae,Hantavirus,Andes virus
seg. S
AF482717

Peste-des-petits-ruminants
NC_006383
vertebrates,human
11
Paramyxoviridae,Morbillivirus,Peste-des-
—
HQ197753,JX217850

virus

petits-ruminants virus

,AJ849636,KF727981

,AY560591,EU26727

4,KC594074,X74443,

EU267273,FJ905304,

JF939201

Pichinde virus
NC_006439
vertebrates,human
3
Arenaviridae,Arenavirus,Pichinde virus
seg. L
AF427517,EF529745,

EF529747

Pichinde virus
NC_006447
vertebrates,human
10
Arenaviridae,Arenavirus,Pichinde virus
seg. S
U77602,EF529746,M

16734,EF529744,AF0

81552,K02734,AF081

553,AF081554,AF081

555,M16735

Pigeon paramyxovirus 1
NC_002617
vertebrates,human
18
Paramyxoviridae,Avulavirus,Newcastle
—
GQ429292,JX486557

disease virus

,JX901121,JX901120,

JX486555,JX486556,

FJ410145,JX901119,

JX486551,FJ410147,

JX901110,JX486552,

JX486554,JX901123,

JX486553,JX901122,

JX486550,JX901109

Pigeon paramyxovirus-1
NC_002617
vertebrates,human
1
Paramyxoviridae,Avulavirus,Newcastle
—
AJ880277

disease virus

Pirital virus
NC_005894
vertebrates,human
9
Arenaviridae,Arenavirus,Pirital virus
seg. S
AF485262,AY574571,

AF277659,AY573923,

AY574572,EU542420

,AY574573,AY57392

1,AY575850

Pirital virus
NC_005897
vertebrates,human
2
Arenaviridae,Arenavirus,Pirital virus
seg. L
AY216505,AY494081

Pneumonia virus of mice
NC_006579
vertebrates,human
1
Paramyxoviridae,Pneumovirus,Murine
—
AY743910

15

pneumonia virus

Pneumonia virus of mice
NC_006579
vertebrates,human
1
Paramyxoviridae,Pneumovirus,Murine
—
AY743909

J3666

pneumonia virus

Porcine enteric sapovirus
NC_000940
vertebrates,human
3
Caliciviridae,Sapovirus,Sapporo virus
—
AF182760,AB221130,

,NC_01062

AY425671

4,NC_0062

69,NC_006

554

Porcine rotavirus
NC_007543
vertebrates,human
3
Reoviridae,Rotavirus,Rotavirus C
seg. 6
EU169871,EU169870

,EU169869

Porcine rotavirus
NC_007544
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus C
seg. 7
X60546

Porcine rotavirus
NC_007545
vertebrates,human
2
Reoviridae,Rotavirus,Rotavirus C
seg. 9
EU169873,EU169872

Porcine rotavirus
NC_007569
vertebrates,human
3
Reoviridae,Rotavirus,Rotavirus C
seg.
EU169874,DQ003298

10,DQ003299

Porcine rotavirus
NC_007570
vertebrates,human
10
Reoviridae,Rotavirus,Rotavirus C
seg. 5
L29184,DQ534018,FJ

494692,M29287,FJ49

4691,DQ003294,AB5

76626,FJ494690,DQO

03295,L29186

Porcine rotavirus
NC_007571
vertebrates,human
101
Reoviridae,Rotavirus,Rotavirus C
seg. 8
EF474079,FJ807879,

FJ807796,DQ003292,

FJ807870,DQ534015,

FJ807815,FJ807854,

FJ807868,FJ807873,

FJ807840,FJ807874,

FJ807844,FJ807793,

FJ807823,FJ807817,

FJ807792,FJ807819,

FJ807803,FJ807797,

FJ807871,FJ807788,

FJ807790,FJ807836,

FJ807820,FJ807843,

FJ807829,FJ807863,

FJ807798,FJ807837,

FJ807839,FJ807825,

FJ807794,FJ807853,

FJ807808,FJ807842,

FJ807869,FJ807838,

FJ807809,FJ807867,

FJ807795,FJ807816,

FJ807806,FJ807822,

FJ807801,FJ807855,

FJ807833,AF192267,

FJ807835,FJ807802,

FJ807818,FJ807847,

FJ807789,FJ807810,

FJ807828,FJ807862,

FJ807832,FJ807851,

FJ807866,FJ807813,

FJ807831,FJ807848,

FJ807845,DQ003293,

FJ807877,FJ807852,

FJ807858,FJ807826,

FJ807859,FJ807811,

FJ807799,AY766085,

FJ807849,FJ807807,

FJ807830,FJ807878,

FJ807846,FJ807791,

FJ807861,FJ807821,

FJ807857,FJ807800,

FJ807865,FJ807856,

FJ807805,FJ807812,

FJ807860,EU445113,

FJ807804,FJ807824,

FJ807841,FJ807864,

FJ807876,FJ807875,

FJ807850,FJ807827,

FJ807834,FJ807814,

L10361,FJ807872, L1

0360

Porcine rotavirus
NC_007572
vertebrates,human
8
Reoviridae,Rotavirus,Rotavirus C
seg. 3
L10358,DQ003290,Li

0359,DQ536362,DQ7

86578,DQ003291,DQ

534016,AB576625

Porcine rotavirus
NC_007573
vertebrates,human
6
Reoviridae,Rotavirus,Rotavirus C
seg.
DQ003296,DQ0474,D

11
0003297,AB576628,

DQ534017,DQ82341

6

Porcine rotavirus A
NC_011501
vertebrates,human
7
Reoviridae,Rotavirus,Rotavirus A
seg. 7
JF796709,JF796698,

AB779644,AB779643

,JF796720,AB779642

,AB779645

Porcine rotavirus A
NC_011502
vertebrates,human
9
Reoviridae,Rotavirus,Rotavirus A
seg. 8
AB779639,AB779641

,JF796719,JF796697,

AB779638,JF796708,

JF781165,AB779640,

JF796730

Porcine rotavirus A
NC_011503
vertebrates,human
26
Reoviridae,Rotavirus,Rotavirus A
seg. 9
AB176680,AB779619

,DQ515961,JF796728

,DQ204743,AY70778

8,AB573873,DQ7865

77,AB176677,AY707

787,DQ786576,JF781

163,AB176678,DQ25

6502,AB573875,JF79

6739,AB573879,AB5

73877,AB176681,AB

176683,JF796706,KC

292205,DQ256503,JF

796717,AB605258,A

B176679

Porcine rotavirus A
NC_011504
vertebrates,human
11
Reoviridae,Rotavirus,Rotavirus A
seg.
JF796699,JF796721,

10
D88831,JF781167,JF

796710,JF796732,JN

650610,FJ492833,DQ

204740,FJ492834,JN

650611

Porcine rotavirus A
NC_011505
vertebrates,human
13
Reoviridae,Rotavirus,Rotavirus A
seg.
KC117150,DQ204739

11
,JF796733,JF781168,

JF796722,KC117151,

KC117152,JF796700,

KC117147,KC117149

,DQ916134,KC11714

8,JF796711

Porcine rotavirus A
NC_011506
vertebrates,human
5
Reoviridae,Rotavirus,Rotavirus A
seg. 2
AB779627,JF781159,

AB779628,AB779629

,AB779626

Porcine rotavirus A
NC_011507
vertebrates,human
9
Reoviridae,Rotavirus,Rotavirus A
seg. 1
AB779622,JF796712,

JF796701,AB779625,

JF781158,JF796723,

AB779624,JF796734,

AB779623

Porcine rotavirus A
NC_011508
vertebrates,human
11
Reoviridae,Rotavirus,Rotavirus A
seg. 3
AB779632,JF781160,

AB779631,JF796714,

AB779630,AY300922

,AB779633,AY27792

1,JF796703,JF79672

5,JF796736

Porcine rotavirus A
NC_011509
vertebrates,human
59
Reoviridae,Rotavirus,Rotavirus A
seg. 6
EU372751,EU372791

,EU372765,EU37275

3,EU372789,AB7796

21,EU372776,EU372

793,EU372764,EU37

2795,EU372797,EU3

72783,EU372774,JF7

96705,EU372787,KC

855062,EU372773,D

0119822,EU372756,

JF796716,EU372781,

EU372755,EU372772

,EU372785,JF796727

,EU372766,EU37276

2,EU372761,EU3727

63,EU372798,EU372

786,EU372767,EU37

2770,KC855061,EU3

72779,EU372799,EU

372768,EU372757,E

U372771,EU372796,

EU372777,EU372752

,EU372782,EU37278

0,EU372790,KC8550

60,EU372754,EU372

758,EU372794,EU37

2784,EU372769,EU3

72760,EU372759,EU

372792,AB779620,E

U372788,EU372778,

Porcine rotavirus A
NC_011510
vertebrates,human
10
Reoviridae,Rotavirus,Rotavirus A
seg. 4
JF781161,JF796737,

AB573878,DQ118979

,AB573876,JF796726

,JF796715,AB573874

,JF796704,FJ492835

Porcine rotavirus A
NC_011504
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg.
AF144799

A411/G3P[7]

10

Porcine rotavirus A strain
NC_011503
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 9
DQ062572

134/04-15

Porcine rotavirus A strain
NC_011510
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 4
DQ061053

134/04-15

Porcine rotavirus A34
NC_007573
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus C
seg.
AF165219

11

Porcine rotavirus B
NC_021542
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus B
seg. 9
AB490417

Porcine rotavirus B
NC_021546
vertebrates,human
15
Reoviridae,Rotavirus,Rotavirus B
seg. 5
AB646359,AB646363

,AB646364,AB64635

5,AB646360,AB6463

54,AB646350,AB646

361,AB646353,AB64

6351,AB646352,AB6

46358,AB646357,AB

646356,AB646362

Porcine rotavirus C
NC_007543
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus C
seg. 6
M69115

Porcine rotavirus C
NC_007546
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus C
seg. 2
M74217

Porcine rotavirus C
NC_007547
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus C
seg. 1
M74216

Porcine rotavirus C
NC_007570
vertebrates,human
2
Reoviridae,Rotavirus,Rotavirus C
seg. 5
HQ323754,M94157

Porcine rotavirus C
NC_007571
vertebrates,human
14
Reoviridae,Rotavirus,Rotavirus C
seg. 8
EF464648,EF464656,

EF464654,EF464651,

U31749,EF464652,E

F464653,EF464655,E

F464650,U31748,HQ

323753,EF464649,M

61101,EF464657

Porcine rotavirus C
NC_007573
vertebrates,human
2
Reoviridae,Rotavirus,Rotavirus C
seg.
AF093202,AF093203

11

Porcine rotavirus C
NC_007574
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus C
seg. 4
M74219

Porcine rotavirus CN86
NC_007570
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus C
seg. 5
U10031

Porcine rotavirus strain
NC_007571
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus C
seg. 8
DQ813658

344/04-1

Porcine rotavirus strain
NC_007573
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus C
seg.
AF144798

A131

11

Porcine rotavirus strain
NC_007573
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus C
seg.
AF144797

A253

11

Porcine rubulavirus
NC_009640
vertebrates,human
1
Paramyxoviridae,Rubulavirus,Porcine
—
BK005918

rubulavirus

Porcine torque teno virus 1
NC_014070
vertebrates,human
2
Anelloviridae,lotatorquevirus,Torque teno sus
—
JX173482,JX173481

virus 1a

Puumala virus
NC_005223
vertebrates,human
25
Bunyaviridae,Hantavirus,Puumala virus
seg.
JQ319172,JQ319174,

M
X61034,JQ319173,U

14136,AF442617,AF4

42614,JQ319175,AF3

67061,AB433850,AF4

42616,L08754,JN831

944,Z49214,M29979,

Z84205,AB433852,LO

8755,HE801634,JN83

1948,JN831951,AY52

6218,AF442615,U224

18,AB297666

Puumala virus
NC_005224
vertebrates,human
56
Bunyaviridae,Hantavirus,Puumala virus
seg. S
AJ314597,FN377822,

X61035,AF367069,AJ

238788,AF367070,H

E801633,U22423,AF

367068,JQ319170,JN

696371,JQ319163,JQ

319164,Z30708,JN83

1943,AB297665,AJ23

8790,JQ319166,Z699

85,JQ319162,Z30705

,AB433845,AJ314598

,JQ319168,AJ223371

,Z30707,Z30706,JQ3

19171,JN831950,Z30

703,AF442613,AJ314

599,JQ319161,AF367

064,JQ319167,AF367

071,JN696376,JN831

947,AF367066,AB433

843,Z84204,Z30702,J

0319169,JN696373,

AF367065,AF367067,

Z46942,JN696375,AY

526219,JQ319165,FN

377821,JN696372,Z2

1497,Z30704,AJ2387

89,JN696374

Puumala virus
NC_005225
vertebrates,human
12
Bunyaviridae,Hantavirus,Puumala virus
seg. L
JN831945,AB574183,

JN831946,M63194,H

E801635,AB574184,

AY526217,AB297667

,JN831952,JN831949

,EF405801,Z66548

Puumala-like virus isolate
NC_005224
vertebrates,human
1
Bunyaviridae,Hantavirus,Puumala virus
seg. S
EF442087

Fusong-Cr-247

Rabbit rotavirus
NC_011503
vertebrates,human
4
Reoviridae,Rotavirus,Rotavirus A
seg. 9
AF528202,AF528201,

AF528203,AF528204

Rabbit rotavirus
NC_011504
vertebrates,human
4
Reoviridae,Rotavirus,Rotavirus A
seg.
AF533536,AF533534,

10
AF533537,AF533535

Rabbit rotavirus
NC_011505
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg.
JQ4361

11

Rabbit rotavirus strain
NC_011504
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg.
AF144792

Alabama

10

Rabbitpox virus
NC_006998
vertebrates,human
1
Poxviridae,Orthopoxvirus,Vaccinia virus
—
AY484669

Rabies virus
NC_001542
vertebrates,human
204
Rhabdoviridae,Lyssavirus,Rabies virus
—
JQ685916,JQ685948,

EU293121,EF437215

,AF499686,DQ09952

5,EU182347,AB0858

28,JN786878,GU565

703,JQ685966,JX473

839,KC595283,JQ68

5962,GU345746,GU6

47092,EF542830,EF5

64174,AY956319,GU

565704,EU293115,J

0685975,JQ685893,

KF155000,EU877068

,JX473841,JQ685919

,EF206719,KC17164

5,EF206720,AB04482

4,JQ685964,EF20670

8,KC595281,JQ6859

59,JQ685926,JQ6858

92,JQ685897,JQ6859

05,HQ450386,JQ685

963,JQ944709,JQ685

942,JN609295,JQ685

895,HQ317918,JQ68

5945,KF154997,JQ68

5894,AB569299,FJ57

7895,KC171644,JQ6

85932,FJ712195,AB6

45847,HM535790,JQ

685930,JQ685940,AB

635373,EU293116,D

0099524,KC193267,

KC169986,JQ685901

,FJ913470,FJ959397,

JQ685967,FJ712193,

JQ685924,JQ685917,

JQ685958,JQ685934,

GU345747,KC737850

,JQ685941,HE80267

5,AY705373,JQ68595

4,JQ685909,EF20671

8,EF206714,M31046,

JQ685957,JQ685912,

JXQ88694,JQ685973,

KF154999,JQ685898,

JQ685968,JQ685946,

JQ685965,EF206713,

DQ875051,GU35865

3,KF154998,GQ9181

39,JQ685951,JQ7306

82,JQ685921,EF2067

09,JQ685902,EU877

071,JQ685937,AB519

642,JQ685910,AB128

149,JQ944707,JQ685

952,KC171643,JQ94

4708,EF206707,AB69

9220,JQ685928,AB51

7660,JQ685931,JQ68

5933,JQ685900,EF20

6710,JQ685974,EU3

11738,JQ423952,AB3

62483,JQ685913,JQ6

85977,JQ685903,AB5

17659,JQ685953,JX2

76550,JQ685914,FJ7

12194,JQ685911,JQ6

85906,JQ685915,AB6

08731,JQ685908,JQ6

85922,JQ685947,JQ6

85935,AB519641,HE

802676,JQ685956,E

U182346,JQ685976,J

0685950,EF206712,J

0685925,EU643590,

FJ866836,EU293113,

FJ866835,JQ685939,

AB009663,DQ875050

,KC595280,EF20671

1,EU877070,JQ6859

44,JQ685955,EF2067

16,JQ685929,EU549

783,EF206717,JQ685

961,JQ944704,JQ685

971,KF155002,GU34

5748,KC762941,JQ6

85918,JQ685920,JQ6

85970,JQ685969,JQ6

85936,HQ891318,JQ

685960,JQ685943,JQ

685896,JQ685927,JQ

685938,EF206715,JQ

647510,KF154996,FJ

712196,EU293111,JX

473840,KC595282,J

0685907,JQ946087,

KC196743,JX473838,

JN786877,JQ685972,

JQ685949,JN234411,

JQ944705,EU877067

,JQ944706,JQ685904

,JQ685899,HQ45038

5,M13215,EU877069,

JQ685923,KF155001

Ravn virus-Ravn,Kenya,
NC_001608
vertebrates,human
3
Filoviridae,Marburgvirus,Marburg
—
EU500828,EU500826

1987

marburgvirus

,EU500827

Recombinant Hepatitis C
NC_009827
vertebrates,human
1
Flaviviridae,Hepacivirus,Hepatitis C virus
—
FJ393024

Virus SA13/JFH1
,NC_00982

6,NC_0098

25,NC_009

824,NC_00

4102,NC_0

09823

Recombinant Hepatitis C
NC_009827
vertebrates,human
1
Flaviviridae,Hepacivirus,Hepatitis C virus
—
JX826592

virus 3a-2a (SA1/JFH1)
,NC_00982

6,NC_0098

25,NC_009

824,NC_00

4102,NC_0

09823

Recombinant Hepatitis C
NC_009827
vertebrates,human
1
Flaviviridae,Hepacivirus,Hepatitis C virus
—
HQ852457

virus DBN-JFH1
,NC_00982

6,NC_0098

25,NC_009

824,NC_00

4102,NC_0

09823

Recombinant Hepatitis C
NC_009827
vertebrates,human
1
Flaviviridae,Hepacivirus,Hepatitis C virus
—
HQ852455

virus DH1-JFH 1
,NC_00982

6,NC_0098

25,NC_009

824,NC_00

4102,NC_0

09823

Recombinant Hepatitis C
NC_009827
vertebrates,human
1
Flaviviridae,Hepacivirus,Hepatitis C virus
—
HQ852456

virus DH5-JFH1
,NC_00982

6,NC_0098

25,NC_009

824,NC_00

4102,NC_0

09823

Recombinant Hepatitis C
NC_009827
vertebrates,human
1
Flaviviridae,Hepacivirus,Hepatitis C virus
—
HQ852454

virus DH6-JFH1
,NC_00982

6,NC_0098

25,NC_009

824,NC_00

4102,NC_0

09823

Recombinant Hepatitis C
NC_009827
vertebrates,human
1
Flaviviridae,Hepacivirus,Hepatitis C virus
—
JF343785

virus ED43(5′UTR-
,NC_00982

NS2)/JFH1_T827A,T977S
6,NC_0098

25,NC_009

824,NC_00

4102,NC_0

09823

Recombinant Hepatitis C
NC_009827
vertebrates,human
1
Flaviviridae,Hepacivirus,Hepatitis C virus
—
JF343780

virus H77(5′UTR-
,NC_00982

NS2)/JFH1_V787A,Q1247
6,NC_0098

L
25,NC_009

824,NC_00

4102,NC_0

09823

Recombinant Hepatitis C
NC_009827
vertebrates,human
1
Flaviviridae,Hepacivirus,Hepatitis C virus
—
EU363761

virus H77C/JFH1
,NC_00982

6,NC_0098

25,NC_009

824,NC_00

4102,NC_0

09823

Recombinant Hepatitis C
NC_009827
vertebrates,human
1
Flaviviridae,Hepacivirus,Hepatitis C virus
—
JF343787

virus HK6a(5′UTR-
,NC_00982

NS2)/JFH1_F350S,N417T
6,NC_0098

25,NC_009

824,NC_00

4102,NC_0

09823

Recombinant Hepatitis C
NC_009827
vertebrates,human
1
Flaviviridae,Hepacivirus,Hepatitis C virus
—
FJ230883

virus HK6a/JFH-1
,NC_00982

6,NC_0098

25,NC_009

824,NC_00

4102,NC_0

09823

Recombinant Hepatitis C
NC_009827
vertebrates,human
1
Flaviviridae,Hepacivirus,Hepatitis C virus
—
JF343781

virus J4(5′UTR-
,NC_00982

NS2)/JFH1_F886L,01496L
6,NC_0098

25,NC_009

824,NC_00

4102,NC_0

09823

Recombinant Hepatitis C
NC_009827
vertebrates,human
1
Flaviviridae,Hepacivirus,Hepatitis C virus
—
FJ230881

virus J4/JFH1
,NC_00982

6,NC_0098

25,NC_009

824,NC_00

4102,NC_0

09823

Recombinant Hepatitis C
NC_009827
vertebrates,human
1
Flaviviridae,Hepacivirus,Hepatitis C virus
—
JF343793

virus J6(5′UTR(1b-E1)-
,NC_00982

NS2)/JFH1
6,NC_0098

25,NC_009

824,NC_00

4102,NC_0

09823

Recombinant Hepatitis C
NC_009827
vertebrates,human
1
Flaviviridae,Hepacivirus,Hepatitis C virus
—
JF343792

virus J6(5′UTR(2a-Dom1/11)-
,NC_00982

NS2)/JFH1
6,NC_0098

25,NC_009

824,NC_00

4102,NC_0

09823

Recombinant Hepatitis C
NC_009827
vertebrates,human
1
Flaviviridae,Hepacivirus,Hepatitis C virus
—
JF343791

virus J6(5′UTR(Cell-
,NC_00982

ATAD1)-NS2)/JFH1
6,NC_0098

25,NC_009

824,NC_00

4102,NC_0

09823

Recombinant Hepatitis C
NC_009827
vertebrates,human
1
Flaviviridae,Hepacivirus,Hepatitis C virus
—
JF343788

virus J6(5′UTR(Cell-U3)-
,NC_00982

NS2)/JFH1
6,NC_0098

25,NC_009

824,NC_00

4102,NC_0

09823

Recombinant Hepatitis C
NC_009827
vertebrates,human
1
Flaviviridae,Hepacivirus,Hepatitis C virus
—
JF343789

virus J6(5′UTR(Cell-
,NC_00982

U3WTS1)-NS2)/JFH1
6,NC_0098

25,NC_009

824,NC_00

4102,NC_0

09823

Recombinant Hepatitis C
NC_009827
vertebrates,human
1
Flaviviridae,Hepacivirus,Hepatitis C virus
—
JF343790

virus J6(5′UTR(Cell-U6)-
,NC_00982

NS2)/JFH1
6,NC_0098

25,NC_009

824,NC_00

4102,NC_0

09823

Recombinant Hepatitis C
NC_009827
vertebrates,human
1
Flaviviridae,Hepacivirus,Hepatitis C virus
—
JF343782

virus J6(5′UTR-NS2)/JFH1
,NC_00982

6,NC_0098

25,NC_009

824,NC_00

4102,NC_0

09823

Recombinant Hepatitis C
NC_009827
vertebrates,human
1
Flaviviridae,Hepacivirus,Hepatitis C virus
—
HQ852467

virus J6/JFH1(DH6-NS5A),
NC_00982

6,NC_0098

25,NC_009

824,NC_00

4102,NC_0

09823

Recombinant Hepatitis C
NC_009827
vertebrates,human
1
Flaviviridae,Hepacivirus,Hepatitis C virus
—
HQ852463

virus J6/JFH1(ED43-NS5A)
,NC_00982

6,NC_0098

25,NC_009

824,NC_00

4102,NC_0

09823

Recombinant Hepatitis C
NC_009827
vertebrates,human
1
Flaviviridae,Hepacivirus,Hepatitis C virus
—
HQ852458

virus J6/JFH1(H77C-NS5A)
,NC_00982

6,NC_0098

25,NC_009

824,NC_00

4102,NC_0

09823

Recombinant Hepatitis C
NC_009827
vertebrates,human
1
Flaviviridae,Hepacivirus,Hepatitis C virus
—
HQ852468

virus J6/JFH1(HCV1-
,NC_00982

NS5A)
6,NC_0098

25,NC_009

824,NC_00

4102,NC_0

09823

Recombinant Hepatitis C
NC_009827
vertebrates,human
1
Flaviviridae,Hepacivirus,Hepatitis C virus
—
HQ852465

virus J6/JFH1(HK6a-NS5A)
,NC_00982

6,NC_0098

25,NC_009

824,NC_00

4102,NC_0

09823

Recombinant Hepatitis C
NC_009827
vertebrates,human
1
Flaviviridae,Hepacivirus,Hepatitis C virus
—
HQ852469

virus J6/JFH1(J1-NS5A)
,NC_00982

6,NC_0098

25,NC_009

824,NC_00

4102,NC_0

09823

Recombinant Hepatitis C
NC_009827
vertebrates,human
1
Flaviviridae,Hepacivirus,Hepatitis C virus
—
HQ852460

virus J6/JFH1(J4-NS5A)
,NC_00982

6,NC_0098

25,NC_009

824,NC_00

4102,NC_0

09823

Recombinant Hepatitis C
NC_009827
vertebrates,human
1
Flaviviridae,Hepacivirus,Hepatitis C virus
—
HQ852461

virus J6/JFH1(J6-NS5A)
,NC_00982

6,NC_0098

25,NC_009

824,NC_00

4102,NC_0

09823

Recombinant Hepatitis C
NC_009827
vertebrates,human
1
Flaviviridae,Hepacivirus,Hepatitis C virus
—
HQ852466

virus J6/JFH1(0C69-
,NC_00982

NS5A)
6,NC_0098

25,NC_009

824,NC_00

4102,NC_0

09823

Recombinant Hepatitis C
NC_009827
vertebrates,human
1
Flaviviridae,Hepacivirus,Hepatitis C virus
—
HQ852462

virus J6/JFH1(S52-NS5A)
,NC_00982

6,NC_0098

25,NC_009

824,NC_00

4102,NC_0

09823

Recombinant Hepatitis C
NC_009827
vertebrates,human
1
Flaviviridae,Hepacivirus,Hepatitis C virus
—
HQ852464

virus J6/JFH1(SA13-NS5A)
,NC_00982

6,NC_0098

25,NC_009

824,NC_00

4102,NC_0

09823

Recombinant Hepatitis C
NC_009827
vertebrates,human
1
Flaviviridae,Hepacivirus,Hepatitis C virus
—
HQ852459

virus J6/JFH1(TN-NS5A)
,NC_00982

6,NC_0098

25,NC_009

824,NC_00

4102,NC_0

09823

Recombinant Hepatitis C
NC_009827
vertebrates,human
1
Flaviviridae,Hepacivirus,Hepatitis C virus
—
JN180456

virus J6/JFH 1-452
,NC_00982

6,NC_0098

25,NC_009

824,NC_00

4102,NC_0

09823

Recombinant Hepatitis C
NC_009827
vertebrates,human
1
Flaviviridae,Hepacivirus,Hepatitis C virus
—
JN180455

virus J6/JFH 1-H K6a
,NC_00982

6,NC_0098

25,NC_009

824,NC_00

4102,NC_0

09823

Recombinant Hepatitis C
NC_009827
vertebrates,human
1
Flaviviridae,Hepacivirus,Hepatitis C virus
—
JN180452

virus J6/JFH 1-J6
,NC_00982

6,NC_0098

25,NC_009

824,NC_00

4102,NC_0

09823

Recombinant Hepatitis C
NC_009827
vertebrates,human
1
Flaviviridae,Hepacivirus,Hepatitis C virus
—
JN180459

virus J6/JFH1-JCH2
,NC_00982

6,NC_0098

25,NC_009

824,NC_00

4102,NC_0

09823

Recombinant Hepatitis C
NC_009827
vertebrates,human
1
Flaviviridae,Hepacivirus,Hepatitis C virus
—
JN180460

virus J6/JFH1-JCH4
,NC_00982

6,NC_0098

25,NC_009

824,NC_00

4102,NC_0

09823

Recombinant Hepatitis C
NC_009827
vertebrates,human
1
Flaviviridae,Hepacivirus,Hepatitis C virus
—
JN180457

virus J6/JFH1-K3a,650
,NC_00982

6,NC_0098

25,NC_009

824,NC_00

4102,NC_0

09823

Recombinant Hepatitis C
NC_009827
vertebrates,human
1
Flaviviridae,Hepacivirus,Hepatitis C virus
—
JN180458

virus J6/JFH1-NZL1
,NC_00982

6,NC_0098

25,NC_009

824,NC_00

4102,NC_0

09823

Recombinant Hepatitis C
NC_009827
vertebrates,human
1
Flaviviridae,Hepacivirus,Hepatitis C virus
—
JN180453

virus J6/JFH 1-S52
,NC_00982

6,NC_0098

25,NC_009

824,NC_00

4102,NC_0

09823

Recombinant Hepatitis C
NC_009827
vertebrates,human
1
Flaviviridae,Hepacivirus,Hepatitis C virus
—
JN180454

virus J6/JFH 1-SA13
,NC_00982

6,NC_0098

25,NC_009

824,NC_00

4102,NC_0

09823

Recombinant Hepatitis C
NC_009827
vertebrates,human
1
Flaviviridae,Hepacivirus,Hepatitis C virus
—
JF343783

virus J8(5′UTR-NS2)/JFH1
,NC_00982

6,NC_0098

25,NC_009

824,NC_00

4102,NC_0

09823

Recombinant Hepatitis C
NC_009827
vertebrates,human
1
Flaviviridae,Hepacivirus,Hepatitis C virus
—
FJ230882

virus J8/JFH1
,NC_00982

6,NC_0098

25,NC_009

824,NC_00

4102,NC_0

09823

Recombinant Hepatitis C
NC_009827
vertebrates,human
1
Flaviviridae,Hepacivirus,Hepatitis C virus
—
FJ230884

virus 0C69/JFH1
,NC_00982

6,NC_0098

25,NC_009

824,NC_00

4102,NC_0

09823

Recombinant Hepatitis C
NC_009827
vertebrates,human
1
Flaviviridae,Hepacivirus,Hepatitis C virus
—
JF343784

virus S52(5′UTR-
,NC_00982

NS2)/JFH1_1793S,
6,NC_0098

K14040
25,NC_009

824,NC_00

4102,NC_0

09823

Recombinant Hepatitis C
NC_009827
vertebrates,human
1
Flaviviridae,Hepacivirus,Hepatitis C virus
—
EU204645

virus S52/JFH1
,NC_00982

6,NC_0098

25,NC_009

824,NC_00

4102,NC_0

09823

Recombinant Hepatitis C
NC_009827
vertebrates,human
1
Flaviviridae,Hepacivirus,Hepatitis C virus
—
JF343786

virus SA13(5′UTR-
,NC_00982

NS2)/JFH1_A1022G,K111
6,NC_0098

9R
25,NC_009

824,NC_00

4102,NC_0

09823

Recombinant Hepatitis C
NC_009827
vertebrates,human
1
Flaviviridae,Hepacivirus,Hepatitis C virus
—
HQ852453

virus TN-JFH1
,NC_00982

6,NC_0098

25,NC_009

824,NC_00

4102,NC_0

09823

Recombinant chimeric
NC_009827
vertebrates,human
1
Flaviviridae,Hepacivirus,Hepatitis C virus
—
HM049503

Hepatitis C virus 1b/2a
,NC_00982

432/JFH-1
6,NC_0098

25,NC_009

824,NC_00

4102,NC_0

09823

Respiratory syncytial virus
NC_001803
vertebrates,human
24
Paramyxoviridae,Pneumovirus,Respiratory
—
BD137600,BDQ81927

syncytial virus

,BDQ91237,BDQ8192

8,FJ614813,JN03211

5,BD137598,JN03211

9,U39661,BD137603,

BDQ81930,JX503100,

BDQ81932,BD137602

,JX503101,BD137601

,BD271636,JN032116

,BDQ81931,BD27163

5,BDQ81929,JN03211

7,BD137599,JN03212

0

Reston ebolavirus
NC_004161
vertebrates,human
4
Filoviridae,Ebolavirus,Reston ebolavirus
—
AF522874,JX477166,

AY769362,JX477165

Reston ebolavirus-Reston
NC_004161
vertebrates,human
4
Filoviridae,Ebolavirus,Reston ebolavirus
—
AB050936,FJ621585,

FJ621583,FJ621584

Retroperitoneal
NC_009333
vertebrates,human
1
Herpesviridae,Rhadinovirus,Human
—
KF703446

fibromatosis-associated

herpesvirus 8

herpesvirus

Rhesus rotavirus
NC_011500
vertebrates,human
8
Reoviridae,Rotavirus,Rotavirus A
seg. 5
AY117051,AY117052

,AY117049,AY11705

0,U08433,AY117053,

HQ665465,AY117048

Rhesus rotavirus
NC_011502
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 8
AY065842

Rhesus rotavirus
NC_011503
vertebrates,human
3
Reoviridae,Rotavirus,Rotavirus A
seg. 9
HQ665466,M21650,A

F295303

Rhesus rotavirus
NC_011505
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg.
HQ665467

11

Rhesus rotavirus
NC_011510
vertebrates,human
2
Reoviridae,Rotavirus,Rotavirus A
seg. 4
M18736,AY033150

Rhinovirus A
NC_001617
vertebrates,human
2
Picornaviridae,Enterovirus,Rhinovirus A
—
JXQ74050,GQ223229

Rhinovirus B
NC_001490
vertebrates,human
1
Picornaviridae,Enterovirus,Rhinovirus B
—
JX193795

Rinderpest virus
NC_006296
vertebrates,human
7
Paramyxoviridae,Morbillivirus,Rinderpest virus
—
JN234008,GU168576

,JN234010,AB547190

,Z30697,JN234009,A

B547189

Rinderpest virus (strain
NC_006296
vertebrates,human
1
Paramyxoviridae,Morbillivirus,Rinderpest virus
—
X98291

Kabete 0)

Rodent hepacivirus
NC_021153
vertebrates,human
1
Flaviviridae,Hepacivirus,Rodent hepacivirus
—
KC815310

Rotavirus A
NC_011500
vertebrates,human
94
Reoviridae,Rotavirus,Rotavirus A
seg. 5
JN258352,JN258790,

JXQ27770,JN651781,

JN258907,JXQ27881,

JN651846,JXQ27738,

HQ657144,JXQ27782

,JXQ27866,JXQ27902,

JXQ27662,JXQ27760,

JN258407,JN635549,

JXQ27837,JN651748,

JN258810,JN635538,

JN258951,JN635527,

JXQ27892,JN827248,

JXQ27811,JF521476,

JXQ27943,JXQ27815,

JN651857,JXQ27847,

JN258862,JN651813,

JXQ27756,HQ657133

,JN258944,JN651792

,JN258892,JN258337

,JN258833,JN872871

,JN258355,HQ65715

5,JXQ27947,JN25884

5,JXQ27672,JXQ2771

3,JN651879,JXQ2792

4,JN831204,JXQ2772

1,JN258395,JQ68867

7,JXQ27651,GU5650

69,JN831226,JXQ276

95,JN013975,JXQ276

91,JXQ27870,JXQ279

14,FN665692,JN2588

54,GU565047,JXQ27

966,GU827412,JN65

1803,JN651759,JN25

8801,GU565091,GU5

65058,JXQ27832,FN6

65681,JN831215,JXQ

27644,JXQ27726,JN6

51770,JN258377,JN6

51824,JXQ27793,JN6

51835,FJ169857,JN2

58372,JN258821,JN0

13974,JN258878,GU

565080,JN651874,JF

521465,JN258914,JN

258925,DQ838599,J

XQ27968,JN651890,J

N258887

Rotavirus A
NC_011501
vertebrates,human
387
Reoviridae,Rotavirus,Rotavirus A
seg. 7
KC443781,KC579550

,JN258391,KC579943

,EF990696,KC44292

5,KC443562,KC8346

92,KC580442,FJ7939

79,KC580343,KC580

465,KC443364,KC57

9572,KC443595,KC5

79710,KC443661,KC

580548,JXQ40431,KC

174896,KC580534,K

C769324,KC443617,

FJ793988,JX406753,

KC443342,KC579778

,KC443683,HQ66113

1,KC579925,JN60545

6,KC443771,KC1752

22,KC580035,KC175

255,EF990692,KC57

9495,EF990710,KCS

79627,KC579991,KC

769302,KC443716,JN

258358,KC580275,K

C769445,KC215570,

DQ492676,KC443551

,JN258334,KC175069

,KC443153,GU82741

4,JN258929,FJ79398

5,KC174940,KC5800

94,JN258840,KC4437

38,JN651750,KC5803

54,KC443529,KC579

957,KC579661,KC44

2971,KC580620,KC8

34691,DQ838610,KC

174874,KC443353,K

C443186,JQ688679,

KC580024,KC195766

,KC175244,JX965152

,KC769357,KC57975

4,KC769335,KC4436

06,KC579528,KC443

463,JN258881,KC580

105,HQ657135,KC17

5123,JF521467,KC57

9767,KC175047,FJ79

3976,DQ146678,KC5

80162,KC442948,KC

215526,KC443584,K

C175233,KC579483,

KC579594,KC442889

,KC834690,KC58025

1,KC580586,KC4434

52,KC175134,KC769

467,KC579944,KC58

0575,HQ661120,HQ6

61142,KC174929,KC

443419,JN258905,KC

443015,KC443518,K

C769478,HQ846860,

FJ793975,KC579605,

KC175189,FJ793990,

KC174863,KC580128

,KC579506,KC76940

1,JN258871,DQ4905

34,KC174972,KC175

266,HQ657146,KC44

3208,FN665684,GU1

99518,KC215537,KC

579877,JN651761,G

U565059,KC175112,J

N651881,KC443441,J

N258381,KC579811,

KC579660,KC580240

,KC175003,GU56508

1,KC443230,KC1936

20,KC443650,EF554

155,KC579688,KC44

3386,KC443573,JN25

8947,KC215494,FJ79

3973,KC580523,JN65

1868,JN651826,KC44

3639,JN831217,FJ79

3981,KC443252,JN87

2873,KC443296,KC4

43131,KC215516,KC

580207,FJ793969,KC

443285,KC580420,K

C175091,KC579822,

KC175025,KC443263

,KC175156,KC17490

7,KC769390,KC1751

67,KC442878,JN6054

45,KC579472,KC443

727,KC579911,KC58

0398,KC443219,KC5

79924,FJ793992,KC7

69379,KC443375,KC

443026,KC579699,K

C193609,JN258369,K

C580598,KC580276,

EF554144,KC580229

,KC443540,FJ793974

,GU565070,KC58015

0,FJ793971,JN65179

4,KC580319,KC5798

36,KC580185,KC174

962,GU565092,JN25

8828,KC580431,JX96

5151,KC442993,JN65

1805,KC580409,HQ6

57157,KC443672,KC

579616,KC580218,K

C579539,FJ169859,K

C175102,FJ793980,K

C579517,KC580365,J

N258859,KC579968,

KC174918,JN258896,

KC579583,KC580013

,JN635540,KC579852

,JN258402,HQ84687

1,KC443749,KC5806

09,KC174885,JN8312

06,KC580196,KC580

511,EF990700,KC44

3705,KC443408,KC5

79721,KC443004,JX2

71009,JQ988896,JX2

71006,KC175058,FJ7

93987,KC174993,JN6

05434,KC175036,FJ7

93978,DQ146703,KC

443485,DQ146645,E

F990688,JN651837,K

C442867,KC769346,J

N258781,KC443397,

KC580547,KC443197

,KC579835,JN013979

,KC580500,JN651859

,KC140595,KC17501

4,KC769423,GU2964

15,KC443331,KC174

951,FJ793983,KC443

496,KC580173,JN827

250,JN635551,KC443

175,JX965153,KC175

080,FJ793984,KC579

800,KC580071,JN258

938,HQ846882,KC58

0332,JN258848,KC44

3142,FJ793972,JN60

5423,KC580488,KC1

75178,KC580294,KC

442937,KC215474,K

C580631,KC579789,

FJ793986,JN258806,

KC579641,KC769456

,KC579677,KC76936

8,KC579561,JN63552

9,KC443760,JN01398

0,KC579743,GU1995

00,JN651783,KC5804

64,KC175145,KC443

164,KC769412,KC21

5483,FJ793977,KC17

5211,KC769313,KC5

79732,DQ146689,KC

769434,KC580053,K

C442900,KC443694,J

N651897,KC580453,

KC215548,KC215505

,KC580387,DQ14665

6,FJ793982,KC57988

8,DQ490558,KC5799

80,DQ490541,KC580

083,EF990704,JF835

114,JN605412,KC443

507,KC195757,JN258

918,KC175277,KC44

3628,FJ793991,JN83

1228,KC442911,FJ79

3970,KC579640,KC5

80476,FJ793989,KC4

42960,KC579865,KC

580318,JN651848,JN

258815,HQ846849,K

C580305,FN665695,

KC174982,KC443320

,JN258793,KC580564

,JN651815,KC580052

,DQ146696,KC17520

0,KC580376,KC4429

82,GU296414,KC580

002,KC443241,KC58

0262,JN651772,KC44

3274,JN258347,KC58

0117,KC443308,DQ1

46667,KC443430,GU

565048,JF521478,KC

579900,KC193630,K

C443474

Rotavirus A
NC_011502
vertebrates,human
410
Reoviridae,Rotavirus,Rotavirus A
seg. 8
KC579687,KC443528

,KC175243,KC58060

8,KC579582,JN63555

0,HQ846850,JXQ278

69,KC580353,JXQ404

28,KC442959,KC175

057,KC579482,JXQ27

640,KC579941,DQ14

6690,JN258782,KC57

9720,KC193608,KC1

75155,KC175133,JN6

51793,KC580206,KC

175232,KC175046,K

C443284,KC580161,J

F521468,KC175090,J

N258365,KC195765,

GU565082,KC174950

,DQ490559,KC44297

0,KC443141,KC5800

23,JXQ27665,KC4431

63,DQ490542,KC443

484,JN258945,JN651

858,KC769466,KC58

0463,JN651771,KC58

0574,JN258902,JN65

1836,KC580184,EF5

54145,JX406754,KC5

80138,KC443374,KC

443295,DQ146697,K

C443605,JXQ27956,J

X683000,HQ846861,

KC442888,KC580149

,HQ657145,JXQ2775

9,KC580487,JN83121

6,JXQ27715,KC17510

1,KC579639,KC4431

85,GU565093,KC215

536,KC175068,GU56

5071,KC443352,KC1

75013,DQ146704,KC

174884,JX965148,KC

443660,KC579777,JN

605455,KC193629,JX

027781,KC443473,JX

027825,KC443341,K

C834693,KC769400,

KC443273,GU199489

,KC442936,JN377717

,KC580522,KCO2003

3,KC579899,KC4437

37,KC443451,KC443

385,JXQ27967,GU19

9517,KC195754,KC1

74971,KC443003,FJ1

69860,KC174906,FN

665694,KC443363,K

C174992,JN872872,E

F990705,JN635528,K

C580342,KC442924,

KC175122,KC175276

,KC579659,GU19949

9,DQ146646,EF9906

89,KC442992,JX6829

98,KC442866,KC580

239,KC579788,KC58

0375,GU296413,KC5

79676,JN651891,KC5

79864,JXQ27836,JN2

58860,JN651782,KC4

43014,DQ492677,KC

020021,KC579942,K

C443726,KC140594,J

N651875,JXQ27923,K

C443262,JXQ27846,J

N258873,KC443407,

KC175166,KC769334

,KC580585,DQ14667

9,KC579887,JXQ2774

8,EF990693,KC4434

29,KC579922,KC175

079,JXQ27891,HQ66

1119,KC580012,KC4

43440,JN258387,JN2

58816,KC175177,JN6

51880,KC580316,JX2

71008,KC579799,JXQ

27698,KC579876,JXQ

27737,JXQ27814,KC5

80475,KC580317,KC

443693,JX965150,JN

605422,KC579834,K

C579990,JN377719,J

N258802,KC579604,J

F521479,HQ846883,

KC443152,DQ146668

,JN377721,KCO20031

,KC443561,KC76935

6,JN013977,KC58036

4,JN651847,KC44289

9,JF712584,KC57974

2,KC580273,KC5800

51,KC579753,JN2583

98,JN258824,KC5804

30,JN831205,KC4433

96,KC174939,KC443

748,KC443229,KC44

3025,KC580001,KC4

43196,JN258924,KC4

43462,KC579979,KC

443759,KC579731,JN

651749,KC443306,K

C579810,KC174862,

KC175265,GU565060

,KC443780,JQ98889

5,KC579494,JXQ2788

0,JXQ27946,KC58007

0,KC769323,JN25834

3,KC579910,KCO200

20,KC443616,KC443

638,KC580250,GU29

6412,KC580082,KC7

69345,JXQ27687,JXQ

27671,KC443506,JN8

27252,KC175002,JXQ

27703,KC579821,KC

442947,KC443251,K

C174961,KC579833,

GU199510,KC769433

,KC442877,EF13666

0,KC579549,JN37771

8,JXQ27858,KC83469

4,JN651814,KC57985

1,EF990711,KC4436

82,KC443517,JX9651

49,KC579560,KC579

967,KC580116,JN258

836,KC769422,EF55

4156,HQ657156,JXQ

27792,KC579626,JXQ

40429,GU565049,KC

579709,JX682999,JN

258913,JN258354,KC

769455,KC580533,K

C174895,KC769411,

KC579956,JN651760,

JN258794,KC174917,

KC175111,KC834695

,KC580093,KC44341

8,KC580408,KC7694

44,KC175024,KC769

378,KC443671,JN258

849,KC579863,KC44

3330,JN258882,KC58

0386,KC580050,KCO

20022,KC580034,KC

769301,HQ661130,K

C443715,JN651804,E

F990697,KC174873,J

N651825,GU827413,

JN605433,KC769389,

KC579471,KC175221

,JN258935,KC193619

,KC174981,KC57950

5,KC580172,JQ6886

80,JN258376,JN8312

27,JXQ27913,JN3777

20,KC580195,KC443

649,KC580499,KC57

9538,KC580510,KC1

75035,KC443572,KC

443704,JN635539,KC

443240,KC579766,K

C443130,HQ846872,

KC175210,KC580261

,KC579593,KC44377

0,KC175199,HQ6571

34,JF712573,JN0139

78,JN258891,KC4434

95,JXQ27769,KC4432

07,KC579923,KC579

571,HQ661141,JN60

5444,KC580274,JXQ2

7725,KCO20028,DQ8

38615,KC580452,KC

580127,KC442981,JN

013976,KC579527,K

C443627,KC580217,

KCO20032,KC580597

,KC174928,KC17525

4,KC442910,KC7694

77,KC443174,JX6829

97,JN258332,KC5801

04,KC580630,KC580

441,KC443594,KC17

5188,KC443307,KC5

79615,KC580228,DQ

490535,DQ146657,K

C443583,EF990701,

KC443539,JXQ27803,

JF712562,KC580545,

KC443319,KC579698

,KC443218,JXQ27934

,KC579516,KCO2002

7,KC580304,KC5806

19,KC580546,KC580

293,KC175144,KC76

9367,KC580563,KC7

69312,FN665683,KC

580419,JXQ27654,KC

580397,KC215493,JN

605411,JXQ27901,KC

443550,KC579638

Rotavirus A
NC_011503
vertebrates,human
429
Reoviridae,Rotavirus,Rotavirus A
seg. 9
KC442875,JX841120,

JN651889,AB081787,

KC580102,GU565068

,KC579977,KC58063

9,EF079066,KC8346

37,KC580313,KC443

249,KC579696,KC76

9332,JN258874,KC17

5230,KC580473,KC1

75241,KC175000,KC

580595,JN651845,JX

965176,AB081793,A

Y773003,HQ846862,

KC579613,AB526247

,KC175033,AB08179

4,KC834638,KC1751

09,GU296431,KC580

237,U26386,AB08179

5,KC580226,KC5795

91,JN258941,KC4436

14,JX965166,JN2589

17,KC579547,JN6518

02,AB081777,U26395

,KC443172,KC44363

6,KC443361,KC4434

16,KC174871,AB081

790,AB081798,AB08

1792,KC769321,KC4

43394,AB081780,KC

443304,KC580362,JN

258401,EF079069,AB

571046,KC580080,A

B081801,KC443227,

HQ846884,DQ47858

2,KC443647,KC4436

03,KC580204,FJ1698

61,KC579808,KC443

150,HE646643,JX965

177,KC174926,JN258

844,KC443449,JN831

236,U26388,KC5797

64,AB526249,JN0139

98,KC443161,KC580

170,AB081776,KC44

3724,AB081774,KC5

80561,JN258805,KC1

75208,U26387,KC83

4641,KC443702,HQ6

61117,JN635559,KC5

79751,KC174948,KC

443194,KC580091,K

C834635,JN258846,

HQ846873,KC580450

,JF712571,KC769398

,KC443789,KC58025

9,KC769475,JN82725

3,AB081785,KC1957

63,JN258338,JN6517

58,KC175285,KC443

293,KC443757,KC44

2886,DQ492674,JX9

65164,KC580182,KC

580485,AB081593,G

U565079,KC442968,

KC579685,KC443471

,KC443548,JN605453

,JX965174,KC174990

,JN014001,JN258390

,KC175022,KC44320

5,KC175044,KC5800

32,KC443328,JN2587

91,KC579707,KC174

915,KC442934,AB57

3651,KC175077,U26

389,JX965167,AB081

775,KC580136,KC58

0519,KC443183,JQ9

88904,U26382,KC58

0125,JX965180,JX96

5173,KC580340,KC7

69343,KC579849,AB

081779,KC443023,K

C769365,KC580351,

KC174882,JXQ40425,

KC175263,KC769354

,KC579480,JX841124

,KC579635,KC44342

7,KC175274,KC4429

8,KC769453,EF121

951,AB621363,KC44

3504,KC443680,JX96

5175,JQ688681,KC5

80531,KC175153,JXQ

40424,KC579503,KC

443592,KC175131,K

C580572,EF079065,

KC175197,AB081799

,JN831225,AB081782

,JN258362,KC579558

,KC580606,KC17489

3,U26390,KC579965,

KC174904,FN665696

,AB573647,JX841123

,HQ661139,KC57979

7,JX965160,DQ3214

97,JN651873,KC4435

70,JN605442,JN6054

9,KC443405,U2639

2,JN651780,KC57998

8,DQ321493,GU2964

30,KC443438,JN2588

27,KC443669,JX9651

79,KC579897,JN6355

48,JF521469,JX9651

71,JN258908,AB0817

81,JN651769,AB0817

89,DQ490550,U2638

0,U26393,GU199497,

JN872870,KC443034,

KC579718,KC579939

,KC579536,EF07906

8,KC442957,KC1749

37,KC443625,KC215

545,KC442990,JN258

368,KC443515,FN66

5685,AB081797,KC5

80248,KC175088,KC

175142,KC443383,JN

013999,KC443526,K

C580079,KC579624,

KC443282,KC580147

,KC174979,JN258813

,JX965170,KC443372

,KC579514,KC44376

8,KC579580,KC5798

85,AB081786,KC443

735,KC769387,KC58

0215,KC443746,KC5

80021,AB081594,GU

565090,KC580302,JN

258895,KC579860,G

U565057,KC443779,J

N635537,KC579999,J

N258380,JX841122,K

C580068,JN014000,K

C443012,DQ478583,

KC443658,KC175252

,KC769486,HQ65714

3,KC580159,KC5800

10,KC443460,KC442

919,AB081784,DQ32

1495,U26383,KC443

260,KC443581,JX965

181,KC443713,KC57

9729,KC579674,JX96

5169,KC443139,AB0

81791,KC443238,AB

573649,JF835112,KC

443271,KC580583,K

C580291,AB081796,

U26381,KC580114,K

C215502,JN651856,

U36242,JN605420,K

C579908,U36241,JN

258928,KC579830,K

C579919,KC443339,

KC769442,KC215513

,L14072,JX965178,K

C443216,KC580628,J

X406755,JN651896,K

C580497,KC579491,J

F712582,KC579786,

KC769464,JN651834,

KC443691,KC579525

,KC580373,AB08178

3,AB081800,KC5806

17,KC175055,KC442

897,KC443035,KC76

9310,KC580428,HQ6

57154,GU565046,KC

443350,DQ478584,K

C579656,EF079067,

KC579819,KC580406

,KC195774,KC44294

5,KC174959,HQ6571

65,KC442979,JX8411

19,KC579874,KC175

186,KC174969,KC58

0542,JX841121,KC76

9409,KC175164,JX96

5182,U26384,U26394

,GU199508,AB08178

8,KC175219,JN25834

6,KC580193,KC5797

75,KC443317,KC579

492,U26379,JN37770

9,KC580384,KC7693

76,KC579569,KC580

395,DQ490556,DQ83

8620,HQ661128,KC5

79602,JN831214,AB5

73645,KC769431,JN2

58953,HE646646,KC

140587,KC580417,JN

258786,KC580047,JN

651791,JF521480,KC

443537,EF990708,K

C769420,KC580439,

KC580461,JN605431,

KC443001,KC580270

,EF079064,KC57974

0,KC580520,JF71256

0,KC443493,HQ8468

51,JN258857,KC5803

29,KC175099,KC443

559,JN651823,JN651

867,KC579954,KC83

4646,KC580508,AB0

81778,JN258879,KC4

43482,GU827411,U2

6385

Rotavirus A
NC_011504
vertebrates,human
399
Reoviridae,Rotavirus,Rotavirus A
seg.
JN605446,KC689359,

10
JN377716,KC443309,

JXQ27849,KC580014,

EF990712,JN831229,

DQ270114,GU19950

1,GU565072,KC5797

68,JN258894,KC5803

06,KC580095,KC579

722,KC175223,KC57

9853,JN258367,KC58

0477,JN258345,KC58

0621,JXQ29832,HQ8

46885,JXQ27817,KC4

43629,KC580524,DQ

490543,KC443497,D

0146658,JN258804,

KC174897,KC443332

,JN258400,KC579867

,KC580025,KC17527

8,JXQ29831,KC44365

1,KC443354,KC1750

15,KC579912,KC443

607,KC443242,KC17

5037,KC580003,JN25

8339,KC579484,KC5

79473,KC443027,JN0

13982,KC580037,KC

443453,KC579606,K

C580174,GU199490,

KC174952,KC443508

,KC193621,KC44287

9,KC443431,JN25892

7,JXQ27904,KC58032

1,KC443563,HQ8468

63,JN635541,KC5803

44,KC579866,DQ492

678,JF521481,KC443

782,JXQ27689,JXQ27

827,KC769457,JN013

984,JXQ27705,KC580

054,KC580535,KC17

5092,KC580466,KC7

69336,KC579678,DQ

146680,JN605457,KC

580599,KC579662,J

0688682,KC443739,

DQ270104,KC580333

,JN605413,KC580295

,JN258838,KC579790

,KC175146,JXQ27949

,KC769314,JXQ29834

,AF093199,JN258389

,KC579507,KC17499

4,JN635552,KC44359

6,KC443154,KC1936

31,KC579733,KC769

347,KC175267,KC57

9969,KC443695,GU5

65050,KC443376,KC

175168,KC580355,K

C175081,KC195767,

KC443409,KC579992

,KC174930,KC44290

1,KC579889,KC4437

28,GU827415,KC442

912,JN651860,KC443

398,HQ657147,KC57

9981,KC442983,KC5

79755,KC175113,KC

579901,DQ270108,K

C442961,KC769468,

KC443750,KC443321

,KC443297,JXQ29835

,DQ838625,KC58054

9,KC442949,KC4430

16,KC580197,KC175

004,HQ661132,KC76

9435,DQ270103,KC1

75026,KC443253,KC

580277,KC579643,G

U565061,KC443618,

KC443275,KC580208

,KC580084,JXQ27860

,JXQ27728,JN258870

,KC443662,KC17494

1,JXQ27643,JN65177

3,JN651838,JN87287

4,JN651892,JX40675

6,JXQ27700,KC58025

2,JXQ27970,KC68935

8,JN258885,KC76944

6,KC580410,KC5804

43,KC443143,KC442

926,JXQ27883,JF712

586,KC443264,KC68

9361,JXQ27740,JXQ2

7772,JXQ27762,KC58

0278,KC579711,EF5

54146,KC215538,KC

579779,KC579812,K

C175212,KC579595,

KC174973,KC579642

,JQ988897,KC76935

8,KC442994,JF52147

0,KC443343,KC5795

29,KC580377,KC769

402,KC443552,JN651

816,HQ661143,KC76

9413,JXQ27958,KC58

0399,EU483088,KC5

79496,KC579837,KC

580512,KC579958,JX

027750,DQ492665,K

C580320,KC580241,

KC580118,KC580388

,KC442890,KC57966

3,JN651849,KC17520

1,JN651806,KC17490

8,KC443706,DQ2701

01,FJ169862,JN6517

62,JN651784,DQ146

669,KC443187,JN651

751,KC443640,KC14

0596,KC580501,KC5

80421,JN258852,KC5

80565,JN605435,KC4

43574,FN665697,KC

579838,JXQ27674,JX

965155,KC580576,K

C195756,DQ490560,

HQ657136,KC175157

,JF712575,KC769391

,JXQ27839,JN827254

,KC579617,KC58058

7,KC769380,KC1751

79,JN635530,HQ661

121,JXQ29836,KC443

365,KC579927,KC57

9801,KC580230,KC5

79573,KC443541,JN2

58357,FN665686,DQ

270102,JXQ27894,D

0270117,KC443486,

KC443220,KC175190

,KC175234,KC44344

2,JN651795,KC17486

4,JN013981,KC57974

4,KC580366,JN25882

0,JX271010,JN25837

9,KC175070,JXQ2766

7,JXQ27936,JN25891

6,JN258867,JXQ2765

6,KC443585,JXQ2779

5,KC579518,KC1749

19,KC769303,KC579

823,JX965156,KC443

761,KC580151,KC58

0454,JN258904,JN60

5424,GU565094,JN2

58826,KC175059,KC

443005,KC442972,K

C175245,KC580432,

KC579926,KC580055

,EF554157,KC17487

5,KC443198,KC4434

64,KC174983,JXQ277

84,JXQ27872,JXQ278

05,KC443475,KC769

424,KC580550,KC58

0036,KC193610,KC4

43519,KC580632,KC

579551,KC689360,K

C175135,KC580072,

KC443231,KC443530

,JXQ29833,KC769369

,KC175048,KC58016

3,KC579584,KC4431

76,JN258785,JN6518

69,KC580140,KC175

124,HQ657158,KC58

0107,GU565083,KC5

79700,KC580489,KC

769479,KC579628,A

F093200,KC443209,J

N831207,JX965154,K

C579945,JN831218,K

C580186,KC442938,

KC443286,KC443165

,JXQ27717,KC174963

,KC175103,JN258952

,DQ146691,GU19951

2,KC580263,KC5806

10,KC442868,KC443

684,KC580219,KC44

3132,KC443420,JXQ2

7916,JN651827,JXQ2

7926,HQ846874,KC1

75256,KC580129,JN6

51882,JN258937,KC4

43717,DQ146647,KC

579689,DQ492655,K

C443772,KC580106,

KC174886,HQ846852

,KC579540,JN013983

,KC579562,KC57987

8,JN258797,KC44367

3,KC443387

Rotavirus A
NC_011505
vertebrates,human
374
Reoviridae,Rotavirus,Rotavirus A
seg.
KC579679,KC443674

11
,KC195768,DQ83863

0,JN831219,KC19363

2,KC580490,KC7693

37,KC443783,JN6054

58,KC580334,FJ7940

20,KC580400,KC769

326,KC140597,KC57

9959,KC580096,JN25

8850,KC580323,KC5

79618,KC442880,KC

579530,KC443487,K

C769381,KC443188,

KC443355,KC769348

,DQ492679,KC44291

3,KC175224,JX27101

1,KC443310,KC5800

73,JXQ27948,KC5802

80,JXQ27826,KC5803

67,KC580085,KC443

166,KC442995,KC44

3641,KC443155,JN65

1828,JXQ27668,KC44

3421,JX406757,KC57

9508,KC443586,KC5

80322,KC443465,KC

579868,KC195755,JN

605425,KC174876,K

C579813,KC175268,

DQ146648,JN258333

,KC580187,KC58035

6,KC443696,KC4435

97,KC443254,KC579

723,JN651774,KC174

887,KC580455,KC57

9552,JF521482,JN25

8803,FJ794021,KC57

9701,JN258926,KC44

3006,KC442984,FJ79

4025,KC579645,KC4

43575,KC443432,DQ

146670,JXQ27848,JN

605414,KC580038,JN

258936,JN258388,KC

443564,EF990694,K

C580264,JN258837,E

F554147,KC443399,

HQ657137,KC579802

,KC580220,FJ794017

,KC580209,KC44376

2,JN258883,KC44333

3,KC579474,KC1750

82,KC579585,KC443

663,HQ657159,KC58

0015,HQ661133,JF71

2587,HQ846864,KC5

79824,KC579946,FJ7

94033,DQ490544,KC

443542,FJ794039,KC

580108,JN827255,KC

579690,JN258869,KC

769315,KC443210,G

U565073,JXQ27739,

GU827416,JN651817

,KC442869,KC58050

2,HQ661144,KC4432

87,KC579563,KC769

447,FJ169863,JN872

875,GU565084,KC58

0536,KC443553,KC5

80307,KC579607,JN8

31230,JN651861,KC5

80152,FJ794018,JN8

31208,KC580566,JXQ

27657,KC580345,JXQ

27704,JXQ27771,KC5

79791,EF990702,FJ7

94016,JN258344,KC5

80551,KC443454,JN2

58946,JN258893,FJ7

94019,JXQ27727,KC5

80026,JXQ27761,KC5

79879,KC579596,JF7

12576,FJ794034,KC4

43017,KC580525,KC

443729,KC580198,K

C579485,JXQ27816,J

N013986,KC769370,

KC580600,JXQ27642,

KC769425,JXQ27673,

GU565095,HQ84685

3,JXQ27804,JF52147

1,JN635542,JN65176

3,KC443133,JN25837

8,KC579734,JXQ2785

9,KC580231,JN60543

6,KC769403,KC4435

09,FJ794027,JXQ278

71,DQ146698,KC579

541,KC442973,KC57

9756,KC443276,KC4

42939,KC580389,KC

580478,KC443344,K

C580175,KC443740,J

XQ27783,KC769392,J

XQ27903,JN651752,J

N013985,JXQ27701,J

XQ27749,JXQ27969,G

U565051,KC443144,

KC580253,FJ794022,

KC193622,KC579891

,DQ146681,DQ14670

6,JXQ27690,JN65183

9,KC580119,GU1995

13,KC579970,KC443

718,JXQ27882,KC580

378,JQ988898,FJ794

026,KC579712,KC17

5235,KC769480,KC5

79902,KC443443,FJ7

94036,JN651796,FJ7

94031,KC579928,HQ

661122,KC579745,K

C580577,FJ794024,G

U199502,KC769414,

KC579664,JN258356,

JXQ27716,JXQ08870,

JXQ27893,FJ794032,

KC443685,KC443322

,KC580422,KC76946

9,GU296418,KC5804

33,KC580279,KC443

298,KC769304,KC44

2928,HQ846875,JN6

35553,KC580164,KC

443652,KC580004,K

C579574,JN258818,K

C580411,JXQ27915,K

C443476,KC443608,

KC769458,FJ794035,

KC579839,KC579497

,DQ146659,JN25836

6,EF990698,KC5806

11,KC443751,KC580

039,KC579913,KC44

3232,JXQ27838,KC44

3773,JXQ27925,JN25

8399,KC769359,KC5

80513,EF554158,GU

296419,KC443377,K

C174984,KC443366,J

X682996,KC443265,

KC443520,KC579993

,DQ490561,KC44322

1,KC769436,KC5797

80,KC442927,JN6054

47,FJ794037,KC4429

50,KC580467,FN665

687,HQ846886,FJ794

029,JN258825,HQ65

7148,FJ794038,JN65

1870,KC580056,KC5

80588,GU565062,KC

580633,KC443177,JN

258915,KC175213,JN

651883,KC580444,K

C579929,JN258796,K

C579769,KC579854,J

F712565,KC443630,F

J794028,KC579519,K

C442902,JXQ27935,K

C443388,KC579982,

KC442891,KC193611

,JN651807,JQ688683

,KC443410,KC44370

7,JN258903,FN66569

8,KC443199,KC5800

57,JN651893,KC5796

29,KC443531,FJ7940

23,EF990690,JXQ277

94,KC442962,JXQ279

57,JN258864,KC5798

90,JN258784,JXQ404

34,KC443498,KC443

619,KC580141,JN651

850,KC580622,EF99

0713,JN635531,KC57

9644,KC580242,KC5

80296,GU199491,KC

174865,KC580130,K

C175125,KC443243,J

N651785,KC443028,

FJ794030

Rotavirus A
NC_011506
vertebrates,human
388
Reoviridae,Rotavirus,Rotavirus A
seg. 2
KC443168,KC175062

,JXQ27660,KC443289

,KC442893,KC58044

6,KC443643,KC4437

53,KC580121,HQ846

844,KC580347,JN605

438,JN258406,JN831

221,KC580568,KC83

4709,JXQ27680,JN60

5416,KC579648,KC5

79487,KC580028,KC

769372,KC579598,K

C580527,KC580061,

KC443665,JN013989,

KC580255,KC443632

,KC579782,KC57999

5,KC579842,KC5795

43,EF560616,KC443

500,KC769317,KC21

5563,KC175259,KC4

43698,KC443179,KC

193634,JN258900,KC

175116,KC580017,G

U296423,KC580006,

KC443434,KC175051

,JF712567,JN651754,

KC443357,KC443731

,KC579692,KC17522

6,KC579666,GU5650

42,KC580538,DQ838

634,KC579932,JN258

385,KC579620,JXQ27

788,DQ492670,KC57

9949,DQ146661,KC1

74996,KC175193,KC

580060,JXQ27647,KC

443742,KC834708,JN

651819,KC769394,K

C443157,JXQ27777,K

C443522,KC769416,

KC443456,KC769306

,JN651898,KC443445

,KC175171,JXQ27745

,DQ146639,JF521462

,KC579499,KC58015

4,KC443764,KC4429

52,KC442882,JN2589

49,KC580624,KC579

631,HQ846877,DQ14

6700,KC579725,JN25

8350,KC579565,KC5

79649,JXQ27682,JX2

71002,JXQ27909,JX9

65138,KC174975,KC

579681,KC442941,K

C579736,KC580075,J

N258831,KC579826,J

XQ27855,JN651809,K

C580613,JN651877,J

N258911,KC442975,J

XQ27658,JN258374,K

C175248,KC579961,

KC769471,KC580166

,KC769405,KC44354

4,JQ988900,KC1750

95,KC580380,KC579

576,KC443533,DQ87

0486,JX406748,HQ6

61113,KC443346,KC

769427,KC175160,K

C769482,JXQ27801,J

XQ27693,KC140591,

KC443223,KC580391

,KC769350,KC58018

9,KC175182,FN6656

89,KC442930,KC442

964,KC579804,KC44

3008,KC443146,KC5

80244,KC580110,DQ

490536,EF554149,K

C580635,KC580480,J

0688674,EF560622,

GU565053,KC442997

,KC580283,KC17508

4,KC834710,KC5800

41,KC443676,JXQ277

12,KC443019,KC443

212,JXQ27977,JXQ27

863,JXQ27823,KC580

554,KC580435,KC57

9771,KC174933,JN65

1841,DQ870498,JXQ

27878,KC443478,KC

443785,KC579904,K

C769460,HQ846855,

KC175237,KC579984

,KC580266,JN831232

,KC195770,KC44336

8,KC580309,KC5796

67,JN651863,JN6517

76,KC580298,KC443

390,JN258921,KC580

504,KC579476,JN605

405,GU827407,JXQ2

7889,JN872866,EF55

4138,KC195761,KC4

43379,KC443775,KC

443312,EF560619,K

C769383,DQ146672,

JN258800,KC443335,

KC580284,KC193624

,JXQ27735,JN651765

,HQ657150,KC17521

5,KC443610,KC1752

81,KC580492,DQ146

683,JN651787,KC443

234,DQ146650,JN63

5533,JX965137,KC58

0336,KC174922,KC4

43300,KC443030,KC

769339,HQ657161,K

C579609,KC443201,

KC580469,KC175018

,KC175073,KC58042

4,JN258396,JXQ2783

4,GU199519,KC1752

04,KC443588,KC579

554,JN258943,KC580

098,KC580325,GU19

9515,KC443467,KC4

43566,KC442986,KC

443412,KC175007,K

C580178,KC579793,

KC579714,KC580602

,KC769361,KC58008

7,KC579587,KC5798

93,DQ490546,JN258

865,JXQ27810,KC443

687,JN258789,KC175

270,JXQ27754,KC443

324,DQ870494,KC17

4889,KC174965,KC5

80042,KC443511,KC

174944,KC580402,K

C580413,JXQ27724,

GU565075,KC579747

,JN651798,JXQ27768

,KC580591,KC44327

8,KC174986,DQ4905

52,KC174911,JN2588

77,KC580369,KC579

841,KC579703,KC44

2904,KC175040,DQ8

38633,KC442915,KC

769449,HQ846866,D

0838631,JN258823,

DQ870506,KC174900

,GU199504,JXQ2793

1,KC193613,KC4436

54,DQ870490,KC442

871,JN651852,KC175

029,JXQ27921,KC580

200,JN827245,KC579

521,KC579532,JN635

544,JX965136,JN651

830,KC443720,JN605

449,KC443555,JN258

843,KC443245,KC58

0457,KC443709,FN6

65678,KC174867,KC

175127,JN635555,JX

027955,KC580132,JN

258889,JF521473,KC

769328,KC443621,JF

712556,KC443401,G

U565086,KC175105,J

N605427,KC174955,

KC579856,GU199493

,JN258932,KC443489

,KC443577,KC57981

5,KC579915,KC4431

90,JN013990,DQ870

502,JN258363,KC579

510,KC443267,DQ83

8632,JN258812,KC57

9972,GU565064,DQ1

46694,DQ838635,KC

580358,FJ169854,KC

579933,KC443423,K

C769438,KC580233,

KC175149,HQ657139

,JN258341,JN831210

,KC443256,KC58057

9,JF712578,JN25885

1,KC580222,KC5802

11,JXQ27900,JXQ279

64,KC443135,JN6518

85,KC443599,JXQ279

42,KC175138,JXQ278

45,KC580515,KC579

881,KC174878,EF56

0613

Rotavirus A
NC_011507
vertebrates,human
383
Reoviridae,Rotavirus,Rotavirus A
seg. 1
JN635532,KC443029,

KC580188,KC580005

,KC580390,KC58055

3,KC579665,JN63554

3,KC443708,KC4428

81,KC769382,EF554

148,KC174899,JN651

818,DQ490545,KC58

0040,KC580058,KC5

79792,KC175061,JN6

51829,KC140590,JX4

06747,KC443576,KC

175236,KC580434,K

C580601,JN258364,K

C579630,KC579803,

DQ146671,KC443389

,KC580165,KC58047

9,KC442951,KC5794

98,KC443189,DQ870

493,JN605404,JN258

835,JXQ27714,KC443

378,DQ870485,KC17

5159,KC443367,KC5

80401,JXQ27736,JX9

65134,KC579647,KC

443334,KC580297,G

U827406,JXQ27857,K

C174974,KC443730,J

XQ27758,KC579892,J

N258386,JN258795,J

XQ27681,KC443543,

KC579680,KC443167

,GU565063,JXQ2765

9,KC443222,KC4437

52,JN651775,KC5801

20,HQ657149,KC580

526,KC579619,GU56

5041,KC580254,KC5

80634,JN258950,KC5

80590,JXQ27641,KC5

80109,KC769338,JX9

65133,KC175203,KC

769415,KC769360,JN

827244,DQ838601,J

XQ27912,KC443422,

GU565052,JN258808

,KC579553,KC44351

0,KC579691,KC4431

78,JN831209,KC1750

72,JN872865,DQ838

639,JXQ27824,KC769

459,KC579542,KC44

3697,KC579713,KC5

79586,HQ846865,KC

579983,DQ146660,K

C579702,KC443784,

KC175258,JXQ27692,

JN651797,KC175269,

KC580176,KC443565

,JN651876,KC175104

,KC580086,DQ87049

7,JXQ27747,KC57981

4,JN605448,HQ6611

12,KC443598,KC580

612,KC195769,KC44

3675,KC443763,HQ6

57138,KC579735,KC

580552,KC580503,JX

027965,HQ846876,K

C174877,JN258901,F

J169853,GU296421,J

XQ27974,KC580265,

KC834711,KC443288

,KC443774,JN651894

,HQ846854,JXQ2793

0,JF712566,KC44355

4,JN651884,KC76934

9,KC579960,KC7694

48,KC579931,KC579

840,DQ870489,KC44

2892,KC175280,KC1

75225,KC175214,KC

769437,KC443609,K

C579509,JN258830,K

C443499,JX271001,J

XQ27945,KC193633,

DQ870505,JN258375

,KC580059,KC17493

2,KC443200,GU5650

74,KC580537,DQ146

693,KC443477,KC19

5753,DQ870501,EFS

60612,KC580346,JF5

21461,KC443719,KC

579948,KC580623,K

C769481,KC443686,

KC443411,DQ492669

,JXQ27648,KC580210

,JN651764,KC580282

,KC579869,JXQ27813

,KC443018,JN258342

,KC580368,KC44348

8,KC175181,EF5606

21,JXQ27802,KC5802

43,KC579724,KC443

741,JN258853,KC580

357,JXQ27732,KC769

404,JN605426,JN258

912,JXQ27791,KC580

589,JXQ27944,KC579

475,KC579597,JXQ27

780,KC443134,JQ98

8899,KC580221,KC1

74888,GU565085,KC

442985,KC443277,JN

651840,KC175192,JF

521472,KC580412,JN

605437,KC175115,K

C580177,EF560615,J

N258331,KC580324,

KC442903,KC193623

,JN013988,EF554137

,KC579746,KC57993

0,DQ838638,DQ8386

36,KC443642,KC579

971,KC443233,KC58

0074,KC579564,KC4

43311,JF712555,JN6

05415,KC442974,KC

580016,KC443400,K

C443356,EF576937,J

XQ27890,JN258861,K

C193612,KC769470,

KC443620,JXQ27908,

DQ146682,KC579903

,JN258868,KC443299

,KC443444,KC44287

0,JXQ27778,KC58037

9,JX965135,KC44324

4,KC579520,KC8347

12,KC580567,JN8312

31,KC769316,KC442

963,JXQ27670,KC769

327,KC834713,KC44

3433,DQ146699,KC4

42996,HQ661134,KC

443466,KC580456,JN

258934,FN665677,K

C443156,DQ146638,

KC579947,KC579575

,JN258397,KC580468

,KC174866,KC57964

6,DQ490551,KC7693

05,GU199514,DQ838

637,KC443532,KC44

3255,KC580423,KC1

75126,KC443266,KC

580153,KC580232,K

C175148,GU199492,

JN635554,JN258886,

KC579880,DQ838640

,KC174985,JF712577

,KC579770,JN258783

,KC580027,KC44345

5,JN013987,JN25881

7,JXQ27708,KC44352

1,KC442940,KC5798

25,KC579914,DQ490

533,KC579757,JXQ27

868,KC579855,KC44

2929,KC175083,JN65

1851,HQ661123,JN6

51786,KC443345,HQ

846843,HQ657160,K

C443587,KC580131,J

XQ27856,KC579608,

DQ146649,KC443664

,JN258353,JN651862

,KC580335,KC44363

1,KC443653,KC4429

14,KC769393,JN6518

08,KC580097,DQ490

539,KC175039,KC44

3211,JXQ27835,KC44

3145,KC580308,DQO

05109,EF560618,JN2

58923,JN651753,KC5

79531,KC579781,KC

769426,KC175028,K

C443007,KC580281,J

XQ27879,GU199503,

KC579994,KC580491

,JN831220,KC769371

,KC580578,JQ68867

3,KC443323,FN6656

88,GU296420,KC580

445,KC579486,JN258

890,KC580199,KC58

0514

Rotavirus A
NC_011508
vertebrates,human
392
Reoviridae,Rotavirus,Rotavirus A
seg. 3
JXQ27954,KC175128,

KC579844,KC579805

,KC580425,JN651777

,KC579772,KC44356

7,JQ688675,KC5800

88,KC443699,KC580

190,KC174868,GU56

5054,JXQ27844,KC58

0625,JN258842,KC44

3501,DQ838641,JXQ

27646,JN831222,DQ

146640,KC175260,JN

258888,KC443402,K

C579477,JN013991,K

C579588,KC580044,

KC443490,KC443479

,JXQ27694,JN258942

,JXQ27746,KC443457

,KC580493,DQ14668

4,KC580528,KC4432

02,KC580099,KC769

329,KC442942,KC76

9307,HQ661136,KC5

79794,KC443633,JXQ

27767,KC579816,JN2

58834,KC443677,JN6

05428,KC193614,KC

579748,KC579650,JX

027976,KC580267,K

C769461,GU565043,

HQ657151,KC579488

,KC769384,JXQ27649

,JXQ27711,EF554150

,EF560620,JN258384

,KC442965,JN605439

,KC580285,HQ65716

2,KC580029,KC5796

51,KC580370,KC580

337,KC442953,DQ87

0499,KC580470,KC5

80555,JN651831,FN6

65690,DQ838642,JN

651895,KC769318,K

C580111,JXQ27833,K

C580245,KC580256,

KC443721,KC195771

,KC443732,KC44318

0,KC769351,HQ8468

78,KC174912,KC580

179,KC769340,JXQ27

922,KC175117,JN258

955,KC579843,KC76

9439,DQ870503,JXQ

27962,KC580359,KC

579950,JN258405,KC

443413,JN258394,KC

769395,HQ661125,K

C580539,KC174879,

KC580286,KC580603

,DQ492671,KC58023

4,KC443688,KC4431

91,KC580155,KC174

956,GU565087,KC17

4890,KC579871,JN65

1886,JN013993,JN25

8822,KC443644,JN63

5556,KC443391,KC1

75216,KC580580,KC

579882,KC175238,D

0490547,KC195760,

KC175205,JXQ27683,

KC443743,JN635545,

KC580212,KC579632

,HQ846856,KC57959

9,JN258910,KC17492

3,KC769472,KC1749

45,JXQ27941,KC5799

35,KC175249,JXQ278

22,KC579610,KC579

682,KC175161,KC44

3347,KC443358,JN87

2867,KC579500,KC5

80447,JXQ27877,KC1

75030,JXQ27790,KC1

93635,KC769483,KC

175074,KC580018,K

C443600,KC175052,

KC443512,KC769428

,KC580392,HQ65714

0,KC580614,KC4428

94,KC215499,JXQ277

57,KC579715,KC443

765,EF560614,KC44

3290,DQ146673,KC4

43224,KC579704,KC

174901,KC443776,E

F560617,KC580201,

KC579934,JXQ27809,

KC579737,KC579996

,KC579533,KC44332

5,JN258931,JQ98890

1,JN827246,KC58004

3,KC580458,KC1752

27,KC443786,KC443

158,KC442998,KC58

0122,KC579962,KC1

75019,KC175063,HQ

846867,JXQ27776,KC

580505,JN651788,KC

443435,KC580133,K

C443589,FJ169855,K

C443147,KC174934,

KC443369,KC579522

,KC834706,KC57976

0,KC175085,JN25878

8,KC443301,KC5796

21,KC580414,KC579

511,KC579974,DQ83

8645,KC174997,KC1

75172,KC175150,FN

665679,KC443268,K

C579857,JN258373,

DQ838644,KC175106

,JN258811,GU19949

4,KC443556,KC7694

06,JXQ27723,KC5803

48,JN258863,KC5796

69,KC443020,KC442

872,KC580076,GU82

7408,JXQ27854,KC44

3622,JF712557,KC44

3313,JXQ27679,KC76

9450,KC579916,HQ6

61114,KC442987,DQ

870487,KC579555,JN

258799,KC443169,JN

258351,JN635534,D

0146701,KC443611,

DQ870491,KC443523

,JN258922,JF712568,

JN605450,KC443136,

KC175041,KC442905

,KC442916,KC58015

6,JN258856,DQ8704

95,KC443710,JN6054

17,KC443534,JN2588

76,KC579544,GU565

065,JN013992,JN651

820,KC443468,KC14

0592,KC580223,KC5

80556,KC580381,KC

443446,KC443336,K

C174966,GU296424,

DQ838643,KC443246

,KC580481,JXQ27867

,KC175194,KC58000

7,KC580636,KC8347

05,JN258361,KC5805

92,KC443279,KC580

326,KC580516,KC58

0436,JXQ27899,KC17

5139,JN651871,JX96

5140,KC443666,KC7

69373,EF554139,KC

175271,JN831233,JN

605406,KC579985,JX

027734,KC174976,JN

651810,KC175008,K

C579577,KC443655,

KC579566,KC579894

,JXQ27888,KC580403

,JX271003,KC579668

,JN831211,KC579827

,KC580299,DQ14666

2,KC579905,DQ8386

00,JXQ27932,KC4434

24,JX965139,KC4432

57,HQ846845,JN258

336,KC443380,KC44

2883,KC580569,KC1

75282,JF712579,KC4

42976,DQ490537,GU

296425,KC443754,K

C442931,KC769362,J

N651853,JN651864,K

C579951,DQ490553,

KC580167,KC174987

,KC443545,KC19362

5,JN651766,JXQ2780

0,KC215510,KC4432

35,JX965141,JN6517

99,JX406749,KC5800

62,GU199488,KC579

693,KC580310,KC17

5183,GU565076,EF5

60623,JXQ27669,JN6

51842,KC443578,KC

769417,KC443009,K

C579783,KC580063,

DQ146651,JF521463,

JXQ27910,JN258899,

JF521474,KC443213,

KC579726,JN651755

Rotavirus A
NC_011509
vertebrates,human
366
Reoviridae,Rotavirus,Rotavirus A
seg. 6
JX965142,KC443668,

KC580192,KC580301

,AB040055,KC57960

1,KC174925,KC4430

00,KC769353,DQ146

702,KC215544,KC57

9987,KC442907,JN63

5547,HQ846870,KC4

43591,KC580571,KC

579774,KC580066,K

C193616,JN651768,K

C443646,KC579847,J

X271005,JN258814,J

XQ40422,KC769397,

KC443679,KC442874

,JN651757,JN258872

,HQ846881,KC58060

5,KC443393,JX84114

4,JF521466,KC17489

2,KC443270,KC5805

07,KC443481,JN6054

30,KC834700,JN2587

80,JF712581,KC4429

18,JN258335,KC4437

45,KC579976,GU199

496,JN831213,DQ49

2673,AY456527,KC1

75108,DQ870504,KC

175021,KC580372,K

C443778,KC580627,

KC834699,JN872869,

KC175240,KC580135

,JN014004,KC195758

,JN014006,KC175043

,JX965143,KC443690

,KC443248,JQ98890

3,KC443514,HQ8468

48,KC580638,KC579

579,KC174989,KC44

3580,KC580289,KC1

74958,GU565056,KC

140589,JN827249,JN

651812,KC579859,G

U296428,KC580582,

KC769474,KC175130

,KC579873,KC17516

3,KC443360,KC5797

63,KC579998,KC442

896,DQ146695,KC58

0101,KC443437,KC5

79818,KC443602,DQ

870492,KC579568,K

C443734,KC443503,

KC580383,JX841180,

KC174999,JN651844,

JN635536,KC769419,

KC175152,KC580339

,DQ490538,KC44320

4,KC443149,KC5798

07,KC443492,JN2589

48,KC443316,KC442

944,KC579634,KC44

3303,KC443635,JN25

8392,JN258906,KC58

0078,JF712570,KC44

3657,KC579896,DQ1

46686,KC443404,KC

580616,KC443292,JN

258839,KC579717,H

0661116,KC443448,

KC580438,KC580594

,KC443237,GU56507

8,KC174870,DQ8705

00,KC443701,JN6518

22,KC579654,JF7125

59,KC580541,KC175

119,EF554152,KC58

0427,KC580560,KC1

75284,KC579623,KC

834701,KC580203,K

C442956,JN258370,

DQ870507,KC580472

,KC175087,KC19362

7,HQ661127,JX8411

43,JN831224,KC5795

02,KC174914,KC580

046,KC443022,DQ49

0555,KC579590,KC5

79938,KC580405,KC

580225,KC175273,K

C580124,KC580394,

KC443011,KC443193

,KC175141,KC17501

0,JN605441,JN83123

5,KC580361,JN60541

9,KC580031,KC5802

36,JN014003,KC5799

64,KC443788,JN2588

97,KC443426,JX9651

44,GU565045,KC443

569,KC443536,FJ169

858,JN651866,KC443

171,KC579655,KC76

9430,KC175185,JN65

1900,KC580484,JF52

1477,KC442933,KC5

79907,HQ657142,KC

580158,KC579953,K

C580269,JN258359,K

C579937,KC580518,

HQ661138,KC579796

,KC579728,KC58011

3,KC443138,KC4437

67,KC193637,KC580

020,KC443160,JN651

801,KC769331,KC57

9918,KC443226,KC5

79695,DQ146675,KC

579829,KC579490,K

C579672,KC175207,

KC579750,JN258847,

KC443281,JN651779,

KC769463,JN651855,

KC579524,JN605408,

JN258880,KC580090,

KC174936,KC580247

,KC443338,JN014005

,KC580169,JN651888

,KC580312,KC44354

7,DQ870488,JN2589

19,JQ688678,KC443

349,KC579546,KC19

5773,JX406752,KC17

4903,JN651872,KC44

3215,KC175065,JN25

8348,KC769408,KC7

69309,HQ657164,KC

443382,KC769342,K

C175076,KC174881,J

N651790,KC443624,

KC443415,KC175262

,KC579513,KC76945

2,KC580067,KC4433

27,KC175218,KC579

479,KC175196,KC76

9364,KC175098,KC5

80496,KC443712,JN6

35558,JX841142,KC5

79673,KC580416,KC

580460,AY456528,K

C443259,GU565067,

KC215501,DQ870496

,GU827410,KC58032

8,KC443558,KC5798

48,JN258807,KC5797

39,KC580559,KC175

229,KC443756,KC17

5251,DQ146664,KC4

42885,U36240,EF554

141,KC580530,GU29

6429,KC580495,KC4

43459,FN665682,KC

443723,DQ146642,K

C580214,HQ846859,

KC175054,KC442989

,KC579535,KC58025

8,KC580483,JN25882

9,KC580449,KC4430

33,KC769375,KC579

684,FN665693,HQ65

7153,KC580181,KC5

79557,KC442978,KC

443182,DQ146653,K

C769386,KC769441,

KC215512,JN605452,

GU565089,JN014002

,U85998,DQ490549,J

N258382,KC579706,

KC442967,KC443470

,DQ838650,KC44361

3,KC580290,KC4433

71,JN258403,KC1751

74,JN258858,KC5800

09,KC175032,KC174

947,KC579884,JN258

930,JN258792,JN651

833,KC443525,KC57

9785,JN258939,KC76

9485,KC769320,KC5

80350,KC579612

Rotavirus A
NC_011510
vertebrates,human
352
Reoviridae,Rotavirus,Rotavirus A
seg. 4
JN258809,JN605451,

JXQ27799,KC175042,

JN635546,JN872868,

KC443348,KC174988

,KC579556,KC57969

4,KC580168,KC5802

02,AB526248,JN6518

78,JXQ27744,GU565

044,KC580134,KC57

9895,KC580180,DQ3

21496,KC443546,KC

580123,KC579761,K

C580581,JN258349,K

C174902,KC442906,

KC580287,KC769418

,KC443021,KC57954

5,KC174967,JXQ2793

3,KC579589,KC4437

87,JN258875,KC1749

13,JN258832,JN6518

65,KC769440,KC443

214,GU565077,AB52

6246,KC443159,KC4

43436,KC193636,KC

443524,JN651887,JX

027702,KC579986,F

N665680,JN013997,K

C443590,KC580626,

KC579762,KC443579

,KC443733,JN831223

,KC443667,KC57951

2,KC443370,KC5798

17,KC443315,KC443

414,KC443645,HQ66

1126,JN258383,JN65

1811,KC443568,JN25

8340,JN258360,JXQ2

7887,JN605407,JXQ2

7975,JN635535,KC57

9653,KC443403,KC5

80517,KC175206,KC

579795,KC443634,K

C443744,KC769396,J

N651767,JN258884,J

XQ27953,DQ838602,

AB573650,GU565066

,KC580557,HQ65715

2,KC442943,JXQ2776

6,JN013995,KC57950

1,KC580257,KC4437

66,KC443010,JXQ277

22,KC769385,HQ657

163,KC443032,JN258

787,KC579716,KC44

3225,KC579936,KC5

80448,U65924,KC76

9462,KC580570,KC5

79975,JN258855,KC5

80008,AB573872,JN6

35557,JN258404,AB5

73648,KC580371,KC

579846,KC580349,K

C175184,KC580604,

KC579611,KC769363

,DQ841262,KC57987

2,KC579534,KC4429

88,KC442954,JXQ276

45,KC580338,KC443

236,KC174924,JN258

798,KC443148,JXQ27

898,GU565055,KC58

0157,KC443326,JQ6

88676,JN651756,KC7

69484,KC580540,KC

580482,KC579567,K

C443678,KC443623,

HQ846857,KC580246

,KC579652,KC44346

9,KC579952,JXQ2782

1,KC580593,GU5650

88,JX271004,KC7693

30,JXQ27789,JXQ276

84,JN651800,KC5797

49,DQ492672,KC580

235,DQ490548,JXQ2

7831,KC579845,KC5

79683,KC443557,JXQ

27853,JN651854,KC5

80089,FJ169856,KCS

79633,JN258866,JN2

58954,JF521475,KC1

93615,JN258371,JN8

31212,KC579727,KC

443247,KC769429,K

C443535,JXQ27940,J

N258920,JXQ27779,K

C443137,KC443337,

KC579705,AB571047

,DQ838604,JXQ2775

5,JN258898,KC57948

9,KC442884,KC4433

92,KC443689,JXQ279

11,KC442977,JN6517

78,KC580112,JXQ279

63,KC580100,KC580

637,FN665691,JN258

819,KC580393,KC17

5020,KC579828,KC5

79523,KC579738,KC

580224,JXQ27661,KC

769473,KC580558,K

C579963,JN651832,K

C580426,KC175097,J

XQ27843,EF990707,K

C443302,KC579806,

KC769308,KC580360

,KC579478,JN831234

,KC175151,KC58019

1,KC769451,KC5804

59,KC579773,KC580

382,KC443491,KC58

0494,KC580415,KC4

43269,JN258841,JN6

51789,KC580030,KC

443425,KC579917,JN

605418,KC174946,K

C579671,HQ846879,

KC580404,KC443447

,JF521464,HQ661137

,JXQ27733,KC580506

,KC580437,JXQ27812

,KC443612,DQ24261

5,KC443170,KC4437

55, KC443722,KC443

513,KC579670,HQ84

6868,KC442955,KC4

43777,KC174977,KC

580065,JN651821,JX

027876, KC442966,K

C579906,EF554151 ,J

N258393,KC443181,KC

442873,KC443291

,KC193626,JXQ27920,

KC579622, KC58061

5,JQ988902,AB57364

6,KC442917,KC5804

71, KC174957, DQ490

554,JXQ27650,AY773

004,EF554140,KC44

3359,KC769374,KC5

79578, JN651843,KC5

79883,KC195759,KC

442895,KC580045,D

Q321494,JXQ27707,

DQ321492,KC579997

,KC769319,KC44331

4,AB055967,KC7693

41, KC580311 ,JN2589

40, KC579858,KC769

352,JN013994,JN258

933,KC443203,KC44

3700,KC443601 ,KC5

80064, KC443502, HQ

657141 ,KC443280,D

Q838603, KC579784,

KC443192,KC442999 ,

DQ838605, J XQ2786

5,KC175195,KC5803

00,JN827247,KC5800

19, KC443711 ,JN6054

40,JX406750,KC5802

88, KC443656,HQ846

846,KC443480,HQ66

1115,GU827409,KC4

42932,KC579600,KC

580077,JN258909,KC

580529, KC443458JX

027678, KC580327,JN

013996, KC443381 ,K

C580268,KC580213,

KC443258,KC175250

,JN605429,JN651899

Rotavirus A 1290xU K
NC_011500
vertebrates,human
3
Reoviridae,Rotavirus,Rotavirus A
seg. 5
JF693219,J F693184,

reassortant (UKg91290)

JF693118

Rotavirus A 1290xUK
NC_011501
vertebrates,human
2
Reoviridae,Rotavirus,Rotavirus A
seg. 7
JF693121 ,JF693187

reassortant (UKg91290)

Rotavirus A 1290x11 K
NC_011502
vertebrates,human
3
Reoviridae,Rotavirus,Rotavirus A
seg. 8
JF693186,JF693120,

reassortant (UKg91290)

JF693220

Rotavirus A 1290xUK
NC_011503
vertebrates,human
3
Reoviridae,Rotavirus,Rotavirus A
seg. 9
JF693188,JF693122,

reassortant (UKg91290)

JF693221

Rotavirus A 1290xUK
NC_011504
vertebrates,human
2
Reoviridae,Rotavirus,Rotavirus A
seg.
JF693123,JF693189

reassortant (UKg91290)

10

Rotavirus A 1290xUK
NC_011505
vertebrates,human
2
Reoviridae,Rotavirus,Rotavirus A
seg.
JF693124,JF693190

reassortant (UKg91290)

11

Rotavirus A 1290xUK
NC_011506
vertebrates,human
2
Reoviridae,Rotavirus,Rotavirus A
seg. 2
JF693181 ,JF693115

reassortant (UKg91290)

Rotavirus A 1290xUK
NC_011507
vertebrates,human
2
Reoviridae,Rotavirus,Rotavirus A
seg. 1
JF693180,JF693114

reassortant (UKg91290)

Rotavirus A 1290xUK
NC_011508
vertebrates,hum
2
Reoviridae,Rotavirus,Rotavirus A
seg. 3
JF693182,JF693116

reassortant (UKg91290)

Rotavirus A 1290xUK
NC_011500
vertebrates,human
3
Reoviridae,Rotavirus,Rotavirus A
seg. 5
JF693219,J F693184,

reassortant (UKg91290)

JF693118

Rotavirus A 1290xUK
NC_011509
vertebrates,human
2
Reoviridae,Rotavirus,Rotavirus A
seg. 6
JF693119,JF693185

reassortant (UKg91290)

Rotavirus A 1290xUK
NC_011510
vertebrates,human
3
Reoviridae,Rotavirus,Rotavirus A
seg. 4
JF693117,JF693183,

reassortant (UKg91290)

JF693218

Rotavirus A AU32xUK
NC_011500
vertebrates,human
3
Reoviridae,Rotavirus,Rotavirus A
seg. 5
JF693129,JF693223,

reassortant (UKg9AU32)

JF693195

Rotavirus A AU32xUK
NC_011501
vertebrates,human
2
Reoviridae,Rotavirus,Rotavirus A
seg. 7
JF693198,JF693132

reassortant (UKg9AU32)

Rotavirus A AU32xUK
NC_011502
vertebrates,human
3
Reoviridae,Rotavirus,Rotavirus A
seg. 8
JF693131,JF693224,

reassortant (UKg9AU32)

JF693197

Rotavirus A AU32xUK
NC_011503
vertebrates,human
3
Reoviridae,Rotavirus,Rotavirus A
seg. 9
JF693199,JF693133,

reassortant (UKg9AU32)

JF693225

Rotavirus A AU32xUK
NC_011504
vertebrates,human
2
Reoviridae,Rotavirus,Rotavirus A
seg.
JF693134,JF693200

reassortant (UKg9AU32)

10

Rotavirus A AU32xUK
NC_011505
vertebrates,human
2
Reoviridae,Rotavirus,Rotavirus A
seg.
JF693201,JF693135

reassortant (UKg9AU32)

11

Rotavirus A AU32xUK
NC_011506
vertebrates,human
2
Reoviridae,Rotavirus,Rotavirus A
seg. 2
JF693192,JF693126

reassortant (UKg9AU32)

Rotavirus A AU32xUK
NC_011507
vertebrates,human
2
Reoviridae,Rotavirus,Rotavirus A
seg. 1
JF693191,JF693125

reassortant (UKg9AU32)

Rotavirus A AU32xUK
NC_011508
vertebrates,human
2
Reoviridae,Rotavirus,Rotavirus A
seg. 3
JF693127,JF693193

reassortant (UKg9AU32)

Rotavirus A AU32xUK
NC_011509
vertebrates,human
2
Reoviridae,Rotavirus,Rotavirus A
seg. 6
JF693130,JF693196

reassortant (UKg9AU32)

Rotavirus A AU32xUK
NC_011510
vertebrates,human
3
Reoviridae,Rotavirus,Rotavirus A
seg. 4
JF693194,JF693128,

reassortant (UKg9AU32)

JF693222

Rotavirus A DS-1xUK
NC_011500
vertebrates,human
3
Reoviridae,Rotavirus,Rotavirus A
seg. 5
JF693207,JF693151,

reassortant (UKg9DS-1)

JF693085

Rotavirus A DS-1xUK
NC_011501
vertebrates,human
2
Reoviridae,Rotavirus,Rotavirus A
seg. 7
JF693154,JF693088

reassortant (UKg9DS-1)

Rotavirus A DS-1xUK
NC_011502
vertebrates,human
3
Reoviridae,Rotavirus,Rotavirus A
seg. 8
JF693087,JF693208,

reassortant (UKg9DS-1)

JF693153

Rotavirus A DS-1xUK
NC_011503
vertebrates,human
3
Reoviridae,Rotavirus,Rotavirus A
seg. 9
JF693089,JF693209,

reassortant (UKg9DS-1)

JF693155

Rotavirus A DS-1xUK
NC_011504
vertebrates,human
2
Reoviridae,Rotavirus,Rotavirus A
seg.
JF693156,JF693090

reassortant (UKg9DS-1)

10

Rotavirus A DS-1xUK
NC_011505
vertebrates,human
2
Reoviridae,Rotavirus,Rotavirus A
seg.
JF693091,JF693157

reassortant (UKg9DS-1)

11

Rotavirus A DS-1xUK
NC_011506
vertebrates,human
2
Reoviridae,Rotavirus,Rotavirus A
seg. 2
JF693082,JF693148

reassortant (UKg9DS-1)

Rotavirus A DS-1xUK
NC_011507
vertebrates,human
2
Reoviridae,Rotavirus,Rotavirus A
seg. 1
JF693147,JF693081

reassortant (UKg9DS-1)

Rotavirus A DS-1xUK
NC_011508
vertebrates,human
2
Reoviridae,Rotavirus,Rotavirus A
seg. 3
JF693149,JF693083

reassortant (UKg9DS-1)

Rotavirus A DS-1xUK
NC_011509
vertebrates,human
2
Reoviridae,Rotavirus,Rotavirus A
seg. 6
JF693152,JF693086

reassortant (UKg9DS-1)

Rotavirus A DS-1xUK
NC_011510
vertebrates,human
3
Reoviridae,Rotavirus,Rotavirus A
seg. 4
JF693150,JF693206,

reassortant (UKg9DS-1)

JF693084

Rotavirus A DxUK
NC_011500
vertebrates,human
3
Reoviridae,Rotavirus,Rotavirus A
seg. 5
JF693140,JF693203,

reassortant (UKg9D)

JF693074

Rotavirus A DxUK
NC_011501
vertebrates,human
2
Reoviridae,Rotavirus,Rotavirus A
seg. 7
JF693143,JF693077

reassortant (UKg9D)

Rotavirus A DxUK
NC_011502
vertebrates,human
3
Reoviridae,Rotavirus,Rotavirus A
seg. 8
JF693142,JF693076,

reassortant (UKg9D)

JF693204

Rotavirus A DxUK
NC_011503
vertebrates,human
3
Reoviridae,Rotavirus,Rotavirus A
seg. 9
JF693205,JF693144,

reassortant (UKg9D)

JF693078

Rotavirus A DxUK
NC_011504
vertebrates,human
2
Reoviridae,Rotavirus,Rotavirus A
seg.
JF693079,JF693145

reassortant (UKg9D)

10

Rotavirus A DxUK
NC_011505
vertebrates,human
2
Reoviridae,Rotavirus,Rotavirus A
seg.
JF693080,JF693146

reassortant (UKg9D)

11

Rotavirus A DxUK
NC_011506
vertebrates,human
2
Reoviridae,Rotavirus,Rotavirus A
seg. 2
JF693137,JF693071

reassortant (UKg9D)

Rotavirus A DxUK
NC_011507
vertebrates,human
2
Reoviridae,Rotavirus,Rotavirus A
seg. 1
JF693136,JF693070

reassortant (UKg9D)

Rotavirus A DxUK
NC_011508
vertebrates,human
2
Reoviridae,Rotavirus,Rotavirus A
seg. 3
JF693072,JF693138

reassortant (UKg9D)

Rotavirus A DxUK
NC_011509
vertebrates,human
2
Reoviridae,Rotavirus,Rotavirus A
seg. 6
JF693141,JF693075

reassortant (UKg9D)

Rotavirus A DxUK
NC_011510
vertebrates,human
3
Reoviridae,Rotavirus,Rotavirus A
seg. 4
JF693139,JF693202,

reassortant (UKg9D)

JF693073

Rotavirus A
NC_011501
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 7
GQ149098

EC2184/ECU/G11P[6]

Rotavirus A
NC_011502
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 8
GQ149101

EC2184/ECU/G11P[6]

Rotavirus A
NC_011504
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg.
GQ149099

EC2184/ECU/G11P[6]

10

Rotavirus A
NC_011505
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg.
GQ149100

EC2184/ECU/G11P[6]

11

Rotavirus A
NC_011509
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 6
GQ149095

EC2184/ECU/G11P[6]

Rotavirus A
NC_011503
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 9
EU488721

Hu/1290/Kenya/1991/G8

Rotavirus A
NC_011502
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 8
JQ993325

Hu/BE UBE2001/2009/G9P

[6]

Rotavirus A
NC_011503
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 9
JQ993318

Hu/BE UBE2001/2009/G9P

[6]

Rotavirus A
NC_011504
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg.
JQ993327

Hu/BE UBE2001/2009/G9P

10

[6]

Rotavirus A
NC_011506
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 2
JQ993322

Hu/BE UBE2001/2009/G9P

[6]

Rotavirus A
NC_011507
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 1
JQ993321

Hu/BE UBE2001/2009/G9P

[6]

Rotavirus A
NC_011508
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 3
JQ993323

Hu/BE UBE2001/2009/G9P

[6]

Rotavirus A
NC_011500
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 5
JF460829

Hu/BEUF01322/2009/G3P

[6]

Rotavirus A
NC_011501
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 7
JF460831

Hu/BEUF01322/2009/G3P

[6]

Rotavirus A
NC_011502
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 8
JF460830

Hu/BEUF01322/2009/G3P

[6]

Rotavirus A
NC_011503
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 9
JF460828

Hu/BEUF01322/2009/G3P

[6]

Rotavirus A
NC_011504
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg.
JF460832

Hu/BEUF01322/2009/G3P

10

[6]

Rotavirus A
NC_011505
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg.
JF460833

Hu/BEUF01322/2009/G3P

11

[6]

Rotavirus A
NC_011506
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 2
JF460824

Hu/BEUF01322/2009/G3P

[6]

Rotavirus A
NC_011507
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 1
JF460823

Hu/BEUF01322/2009/G3P

[6]

Rotavirus A
NC_011508
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 3
JF460825

Hu/BEUF01322/2009/G3P

[6]

Rotavirus A
NC_011509
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 6
JF460827

Hu/BEUF01322/2009/G3P

[6]

Rotavirus A
NC_011510
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 4
JF460826

Hu/BEUF01322/2009/G3P

[6]

Rotavirus A
NC_011500
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 5
JF460840

Hu/BEUF01498/2009/G3P

[6]

Rotavirus A
NC_011501
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 7
JF460842

Hu/BEUF01498/2009/G3P

[6]

Rotavirus A
NC_011502
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 8
JF460841

Hu/BEUF01498/2009/G3P

[6]

Rotavirus A
NC_011503
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 9
JF460839

Hu/BEUF01498/2009/G3P

[6]

Rotavirus A
NC_011504
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg.
JF460843

Hu/BEUF01498/2009/G3P

10

[6]

Rotavirus A
NC_011505
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg.
JF460844

Hu/BEUF01498/2009/G3P

11

[6]

Rotavirus A
NC_011506
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 2
JF460835

Hu/BEUF01498/2009/G3P

[6]

Rotavirus A
NC_011507
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 1
JF460834

Hu/BEUF01498/2009/G3P

[6]

Rotavirus A
NC_011508
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 3
JF460836

Hu/BEUF01498/2009/G3P

[6]

Rotavirus A
NC_011509
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 6
JF460838

Hu/BEUF01498/2009/G3P

[6]

Rotavirus A
NC_011510
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 4
JF460837

Hu/BEUF01498/2009/G3P

[6]

Rotavirus A Hu/CI-
NC_011501
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 7
JN887815

81/2011/KOR

Rotavirus A Hu/CI-
NC_011503
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 9
JN887818

81/2011/KOR

Rotavirus A Hu/CI-
NC_011504
vertebrates,human
2
Reoviridae,Rotavirus,Rotavirus A
seg.
JN887814,JN887816

81/2011/KOR

10

Rotavirus A Hu/CI-
NC_011505
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg.
JN887813

81/2011/KOR

11

Rotavirus A Hu/CI-
NC_011506
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 2
JN887811

81/2011/KOR

Rotavirus A Hu/CI-
NC_011507
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 1
JN887812

81/2011/KOR

Rotavirus A Hu/CI-
NC_011508
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 3
JN887810

81/2011/KOR

Rotavirus A Hu/CI-
NC_011509
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 6
JN887819

81/2011/KOR

Rotavirus A
NC_011503
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 9
FJ348353

Hu/Cm15/2008/Cuba/G9P

[8]

Rotavirus A
NC_011503
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 9
FJ348352

Hu/Cm42/2008/Cuba/G9P

[8]

Rotavirus A
NC_011503
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 9
EU153553

Hu/DC706/USA/1980/G9

Rotavirus A
NC_011501
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 7
EF560709

Hu/Dhaka6/BGD/2001/G11

P25

Rotavirus A
NC_011502
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 8
EF560710

Hu/Dhaka6/BGD/2001/G11

P25

Rotavirus A
NC_011504
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg.
EF560711

Hu/Dhaka6/BGD/2001/G11

10

P25

Rotavirus A
NC_011505
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg.
EF560712

Hu/Dhaka6/BGD/2001/G11

11

P25

Rotavirus A
NC_011507
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 1
EF560705

Hu/Dhaka6/BGD/2001/G11

P25

Rotavirus A
NC_011508
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 3
EF560706

Hu/Dhaka6/BGD/2001/G11

P25

Rotavirus A
NC_011509
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 6
EF560707

Hu/Dhaka6/BGD/2001/G11

P25

Rotavirus A
NC_011503
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 9
EU153554

Hu/G2275/USA/1980/G9

Rotavirus A
NC_011503
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 9
JN699034

Hu/HK69/CN/1978/G5

Rotavirus A
NC_011503
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 9
JN699033

Hu/HK75/CN/1978/G9

Rotavirus A
NC_011503
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 9
FJ348346

Hu/Ha1/2006/Cuba/G1P[6]

Rotavirus A
NC_011503
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 9
FJ348355

Hu/Ha100/2008/Cuba/G9P

[8]

Rotavirus A
NC_011503
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 9
FJ348351

Hu/Ha16/2006/Cuba/G9P[8]

Rotavirus A
NC_011503
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 9
FJ348354

Hu/Ha21/2006/Cuba/G9P[8]

Rotavirus A
NC_011503
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 9
FJ348348

Hu/Ha45/2006/Cuba/G1P[8]

Rotavirus A
NC_011503
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 9
FJ348347

Hu/Ha5/2006/Cuba/G1P[6]

Rotavirus A
NC_011503
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 9
FJ348349

Hu/Ha67/2007/Cuba/G1P[8]

Rotavirus A
NC_011503
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 9
FJ348350

Hu/Ha95/2008/Cuba/G1P[8]

Rotavirus A
NC_011503
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 9
AB525798

Hu/NhaTrang/V141/2006/V

NM/G3

Rotavirus A
NC_011503
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 9
AB525799

Hu/NhaTrang/V152/2006/V

NM/G3

Rotavirus A
NC_011503
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 9
AB605602

Hu/NhaTrang/V17/2006/VN

M

Rotavirus A
NC_011509
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 6
AB605598

Hu/NhaTrang/V17/2006/VN

M

Rotavirus A
NC_011503
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 9
AB525800

Hu/NhaTrang/V173/2006/V

NM/G3

Rotavirus A
NC_011503
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 9
AB525801

Hu/NhaTrang/V182/2006/V

NM/G3

Rotavirus A
NC_011503
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 9
AB605603

Hu/NhaTrang/V20/2006/VN

M

Rotavirus A
NC_011509
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 6
AB605599

Hu/NhaTrang/V20/2006/VN

M

Rotavirus A
NC_011503
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 9
AB605604

Hu/NhaTrang/V30/2006/VN

M

Rotavirus A
NC_011509
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 6
AB605600

Hu/NhaTrang/V30/2006/VN

M

Rotavirus A
NC_011503
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 9
AB605605

Hu/NhaTrang/V32/2006/VN

M

Rotavirus A
NC_011509
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 6
AB605601

Hu/NhaTrang/V32/2006/VN

M

Rotavirus A
NC_011503
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 9
AB525797

Hu/NhaTrang/V88/2006/VN

M/G3

Rotavirus A
NC_011503
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 9
EU284736

Hu/SA3426DGM/04/G12P

[6]

Rotavirus A Hu/USA/06-
NC_011500
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 5
JF460818

242/2006/G2P[6]

Rotavirus A Hu/USA/06-
NC_011501
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 7
JF460820

242/2006/G2P[6]

Rotavirus A Hu/USA/06-
NC_011502
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 8
JF460819

242/2006/G2P[6]

Rotavirus A Hu/USA/06-
NC_011503
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 9
JF460817

242/2006/G2P[6]

Rotavirus A Hu/USA/06-
NC_011504
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg.
JF460821

242/2006/G2P[6]

10

Rotavirus A Hu/USA/06-
NC_011505
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg.
JF460822

242/2006/G2P[6]

11

Rotavirus A Hu/USA/06-
NC_011506
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 2
JF460813

242/2006/G2P[6]

Rotavirus A Hu/USA/06-
NC_011507
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 1
JF460812

242/2006/G2P[6]

Rotavirus A Hu/USA/06-
NC_011508
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 3
JF460814

242/2006/G2P[6]

Rotavirus A Hu/USA/06-
NC_011509
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 6
JF460816

242/2006/G2P[6]

Rotavirus A Hu/USA/06-
NC_011510
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 4
JF460815

242/2006/G2P[6]

Rotavirus A IAL28xUK
NC_011506
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 2
JF990818

reassortant (UKg9IAL28)

Rotavirus A IAL28xUK
NC_011507
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 1
JF990817

reassortant (UKg9IAL28)

Rotavirus A IAL28xUK
NC_011508
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 3
JF990819

reassortant (UKg9IAL28)

Rotavirus A Ind/Bo/HR/B85
NC_011502
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 8
JF831950

Rotavirus A Ind/Bo/HR/B85
NC_011505
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg.
JF831951

11

Rotavirus A Ind/HR/B111
NC_011504
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg.
JF831958

10

Rotavirus A Ind/HR/B91
NC_011504
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg.
JF831955

10

Rotavirus A Ind/MP/13100
NC_011503
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 9
JF831944

Rotavirus A
NC_011504
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg.
JF831954

Ind/MP/Buffalo/6212

10

Rotavirus A Ind/MP/C1
NC_011504
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg.
JF831956

10

Rotavirus A Ind/UKD/C5
NC_011504
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg.
JF831947

10

Rotavirus A Ind/UP/13E4
NC_011504
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg.
JF831945

10

Rotavirus A PxUK
NC_011500
vertebrates,human
3
Reoviridae,Rotavirus,Rotavirus A
seg. 5
JF693096,JF693162,

reassortant (UKg9P)

JF693211

Rotavirus A PxUK
NC_011501
vertebrates,human
2
Reoviridae,Rotavirus,Rotavirus A
seg. 7
JF693099,JF693165

reassortant (UKg9P)

Rotavirus A PxUK
NC_011502
vertebrates,human
3
Reoviridae,Rotavirus,Rotavirus A
seg. 8
JF693212,JF693164,

reassortant (UKg9P)

JF693098

Rotavirus A PxUK
NC_011503
vertebrates,human
3
Reoviridae,Rotavirus,Rotavirus A
seg. 9
JF693166,JF693213,

reassortant (UKg9P)

JF693100

Rotavirus A PxUK
NC_011504
vertebrates,human
2
Reoviridae,Rotavirus,Rotavirus A
seg.
JF693101,JF693167

reassortant (UKg9P)

10

Rotavirus A PxUK
NC_011505
vertebrates,human
2
Reoviridae,Rotavirus,Rotavirus A
seg.
JF693102,JF693168

reassortant (UKg9P)

11

Rotavirus A PxUK
NC_011506
vertebrates,human
2
Reoviridae,Rotavirus,Rotavirus A
seg. 2
JF693159,JF693093

reassortant (UKg9P)

Rotavirus A PxUK
NC_011507
vertebrates,human
2
Reoviridae,Rotavirus,Rotavirus A
seg. 1
JF693092,JF693158

reassortant (UKg9P)

Rotavirus A PxUK
NC_011508
vertebrates,human
2
Reoviridae,Rotavirus,Rotavirus A
seg. 3
JF693094,JF693160

reassortant (UKg9P)

Rotavirus A PxUK
NC_011509
vertebrates,human
2
Reoviridae,Rotavirus,Rotavirus A
seg. 6
JF693097,JF693163

reassortant (UKg9P)

Rotavirus A PxUK
NC_011510
vertebrates,human
3
Reoviridae,Rotavirus,Rotavirus A
seg. 4
JF693095,JF693161,

reassortant (UKg9P)

JF693210

Rotavirus A RVA/Human-
NC_011500
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 5
HQ650120

tc/USA/DS-1/1976/G2P[4]

Rotavirus A RVA/Human-
NC_011501
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 7
HQ650122

tc/USA/DS-1/1976/G2P[4]

Rotavirus A RVA/Human-
NC_011502
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 8
HQ650123

tc/USA/DS-1/1976/G2P[4]

Rotavirus A RVA/Human-
NC_011503
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 9
HQ650124

tc/USA/DS-1/1976/G2P[4]

Rotavirus A RVA/Human-
NC_011504
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg.
HQ650125

tc/USA/DS-1/1976/G2P[4]

10

Rotavirus A RVA/Human-
NC_011505
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg.
HQ650126

tc/USA/DS-1/1976/G2P[4]

11

Rotavirus A RVA/Human-
NC_011506
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 2
HQ650117

tc/USA/DS-1/1976/G2P[4]

Rotavirus A RVA/Human-
NC_011507
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 1
HQ650116

tc/USA/DS-1/1976/G2P[4]

Rotavirus A RVA/Human-
NC_011508
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 3
HQ650118

tc/USA/DS-1/1976/G2P[4]

Rotavirus A RVA/Human-
NC_011509
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 6
HQ650121

tc/USA/DS-1/1976/G2P[4]

Rotavirus A RVA/Human-
NC_011510
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 4
HQ650119

tc/USA/DS-1/1976/G2P[4]

Rotavirus A RVA/Human-
NC_011501
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 7
JX185766

wt/ITA/ASTI23/2007/G9P8

Rotavirus A RVA/Human-
NC_011502
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 8
JX185765

wt/ITA/ASTI23/2007/G9P8

Rotavirus A RVA/Human-
NC_011503
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 9
JX185763

wt/ITA/ASTI23/2007/G9P8

Rotavirus A RVA/Human-
NC_011504
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg.
JX185767

wt/ITA/ASTI23/2007/G9P8

10

Rotavirus A RVA/Human-
NC_011505
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg.
JX185768

wt/ITA/ASTI23/2007/G9P8

11

Rotavirus A RVA/Human-
NC_011506
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 2
JX185759

wt/ITA/ASTI23/2007/G9P8

Rotavirus A RVA/Human-
NC_011507
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 1
JX185758

wt/ITA/ASTI23/2007/G9P8

Rotavirus A RVA/Human-
NC_011508
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 3
JX185760

wt/ITA/ASTI23/2007/G9P8

Rotavirus A RVA/Human-
NC_011509
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 6
JX185762

wt/ITA/ASTI23/2007/G9P8

Rotavirus A RVA/Human-
NC_011510
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 4
JX185761

wt/ITA/ASTI23/2007/G9P8

Rotavirus A RVA/Human-
NC_011501
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 7
JX195071

wt/ITA/AV21/2010/G9P8

Rotavirus A RVA/Human-
NC_011502
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 8
JX195070

wt/ITA/AV21/2010/G9P8

Rotavirus A RVA/Human-
NC_011503
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 9
JX195068

wt/ITA/AV21/2010/G9P8

Rotavirus A RVA/Human-
NC_011504
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg.
JX195072

wt/ITA/AV21/2010/G9P8

10

Rotavirus A RVA/Human-
NC_011505
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg.
JX195073

wt/ITA/AV21/2010/G9P8

11

Rotavirus A RVA/Human-
NC_011506
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 2
JX195064

wt/ITA/AV21/2010/G9P8

Rotavirus A RVA/Human-
NC_011507
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 1
JX195063

wt/ITA/AV21/2010/G9P8

Rotavirus A RVA/Human-
NC_011508
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 3
JX195065

wt/ITA/AV21/2010/G9P8

Rotavirus A RVA/Human-
NC_011509
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 6
JX195067

wt/ITA/AV21/2010/G9P8

Rotavirus A RVA/Human-
NC_011510
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 4
JX195066

wt/ITA/AV21/2010/G9P8

Rotavirus A RVA/Human-
NC_011501
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 7
JX195082

wt/ITA/AV28/2010/G9P8

Rotavirus A RVA/Human-
NC_011502
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 8
JX195081

wt/ITA/AV28/2010/G9P8

Rotavirus A RVA/Human-
NC_011503
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 9
JX195079

wt/ITA/AV28/2010/G9P8

Rotavirus A RVA/Human-
NC_011504
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg.
JX195083

wt/ITA/AV28/2010/G9P8

10

Rotavirus A RVA/Human-
NC_011505
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg.
JX195084

wt/ITA/AV28/2010/G9P8

11

Rotavirus A RVA/Human-
NC_011506
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 2
JX195075

wt/ITA/AV28/2010/G9P8

Rotavirus A RVA/Human-
NC_011507
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 1
JX195074

wt/ITA/AV28/2010/G9P8

Rotavirus A RVA/Human-
NC_011508
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 3
JX195076

wt/ITA/AV28/2010/G9P8

Rotavirus A RVA/Human-
NC_011509
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 6
JX195078

wt/ITA/AV28/2010/G9P8

Rotavirus A RVA/Human-
NC_011510
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 4
JX195077

wt/ITA/AV28/2010/G9P8

Rotavirus A RVA/Human-
NC_011501
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 7
JX195093

wt/ITA/JES11/2010/G9P8

Rotavirus A RVA/Human-
NC_011502
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 8
JX195092

wt/ITA/JES11/2010/G9P8

Rotavirus A RVA/Human-
NC_011503
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 9
JX195090

wt/ITA/JES11/2010/G9P8

Rotavirus A RVA/Human-
NC_011504
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg.
JX195094

wt/ITA/JES11/2010/G9P8

10

Rotavirus A RVA/Human-
NC_011505
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg.
JX195095

wt/ITA/JES11/2010/G9P8

11

Rotavirus A RVA/Human-
NC_011506
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 2
JX195086

wt/ITA/JES11/2010/G9P8

Rotavirus A RVA/Human-
NC_011507
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 1
JX195085

wt/ITA/JES11/2010/G9P8

Rotavirus A RVA/Human-
NC_011508
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 3
JX195087

wt/ITA/JES11/2010/G9P8

Rotavirus A RVA/Human-
NC_011509
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 6
JX195089

wt/ITA/JES11/2010/G9P8

Rotavirus A RVA/Human-
NC_011510
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 4
JX195088

wt/ITA/JES11/2010/G9P8

Rotavirus A
NC_011500
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 5
JN128984

RVA/Human/NCA/125L/20

10/G3P[8]

Rotavirus A
NC_011501
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 7
JN129012

RVA/Human/NCA/125L/20

10/G3P[8]

Rotavirus A
NC_011502
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 8
JN128998

RVA/Human/NCA/125L/20

10/G3P[8]

Rotavirus A
NC_011503
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 9
JN129124

RVA/Human/NCA/125L/20

10/G3P[8]

Rotavirus A
NC_011504
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg.
JN129026

RVA/Human/NCA/125L/20

10

10/G3P[8]

Rotavirus A
NC_011505
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg.
JN129040

RVA/Human/NCA/125L/20

11

10/G3P[8]

Rotavirus A
NC_011506
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 2
JN129068

RVA/Human/NCA/125L/20

10/G3P[8]

Rotavirus A
NC_011507
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 1
JN129054

RVA/Human/NCA/125L/20

10/G3P[8]

Rotavirus A
NC_011508
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 3
JN129082

RVA/Human/NCA/125L/20

10/G3P[8]

Rotavirus A
NC_011509
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 6
JN129110

RVA/Human/NCA/125L/20

10/G3P[8]

Rotavirus A
NC_011510
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 4
JN129096

RVA/Human/NCA/125L/20

10/G3P[8]

Rotavirus A
NC_011500
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 5
JN128974

RVA/Human/NCA/18J/201

0/G1P[8]

Rotavirus A
NC_011501
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 7
JN129002

RVA/Human/NCA/18J/201

0/G1P[8]

Rotavirus A
NC_011502
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 8
JN128988

RVA/Human/NCA/18J/201

0/G1P[8]

Rotavirus A
NC_011503
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 9
JN129114

RVA/Human/NCA/18J/201

0/G1P[8]

Rotavirus A
NC_011504
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg.
JN129016

RVA/Human/NCA/18J/201

10

0/G1P[8]

Rotavirus A
NC_011505
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg.
JN129030

RVA/Human/NCA/18J/201

11

0/G1P[8]

Rotavirus A
NC_011506
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 2
JN129058

RVA/Human/NCA/18J/201

0/G1P[8]

Rotavirus A
NC_011507
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 1
JN129044

RVA/Human/NCA/18J/201

0/G1P[8]

Rotavirus A
NC_011508
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 3
JN129072

RVA/Human/NCA/18J/201

0/G1P[8]

Rotavirus A
NC_011509
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 6
JN129100

RVA/Human/NCA/18J/201

0/G1P[8]

Rotavirus A
NC_011510
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 4
JN129086

RVA/Human/NCA/18J/201

0/G1P[8]

Rotavirus A
NC_011500
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 5
JN128975

RVA/Human/NCA/22J/201

0/G1P[8]

Rotavirus A
NC_011501
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 7
JN129003

RVA/Human/NCA/22J/201

0/G1P[8]

Rotavirus A
NC_011502
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 8
JN128989

RVA/Human/NCA/22J/201

0/G1P[8]

Rotavirus A
NC_011503
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 9
JN129115

RVA/Human/NCA/22J/201

0/G1P[8]

Rotavirus A
NC_011504
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg.
JN129017

RVA/Human/NCA/22J/201

10

0/G1P[8]

Rotavirus A
NC_011505
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg.
JN129031

RVA/Human/NCA/22J/201

11

0/G1P[8]

Rotavirus A
NC_011506
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 2
JN129059

RVA/Human/NCA/22J/201

0/G1P[8]

Rotavirus A
NC_011507
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 1
JN129045

RVA/Human/NCA/22J/201

0/G1P[8]

Rotavirus A
NC_011508
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 3
JN129073

RVA/Human/NCA/22J/201

0/G1P[8]

Rotavirus A
NC_011509
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 6
JN129101

RVA/Human/NCA/22J/201

0/G1P[8]

Rotavirus A
NC_011510
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 4
JN129087

RVA/Human/NCA/22J/201

0/G1P[8]

Rotavirus A
NC_011500
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 5
JN128976

RVA/Human/NCA/24J/201

0/G1P[8]

Rotavirus A
NC_011501
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 7
JN129004

RVA/Human/NCA/24J/201

0/G1P[8]

Rotavirus A
NC_011502
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 8
JN128990

RVA/Human/NCA/24J/201

0/G1P[8]

Rotavirus A
NC_011503
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 9
JN129116

RVA/Human/NCA/24J/201

0/G1P[8]

Rotavirus A
NC_011504
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg.
JN129018

RVA/Human/NCA/24J/201

10

0/G1P[8]

Rotavirus A
NC_011505
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg.
JN129032

RVA/Human/NCA/24J/201

11

0/G1P[8]

Rotavirus A
NC_011506
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 2
JN129060

RVA/Human/NCA/24J/201

0/G1P[8]

Rotavirus A
NC_011507
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 1
JN129046

RVA/Human/NCA/24J/201

0/G1P[8]

Rotavirus A
NC_011508
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 3
JN129074

RVA/Human/NCA/24J/201

0/G1P[8]

Rotavirus A
NC_011509
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 6
JN129102

RVA/Human/NCA/24J/201

0/G1P[8]

Rotavirus A
NC_011510
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 4
JN129088

RVA/Human/NCA/24J/201

0/G1P[8]

Rotavirus A
NC_011500
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 5
JN128977

RVA/Human/NCA/25J/201

0/G1P[8]

Rotavirus A
NC_011501
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 7
JN129005

RVA/Human/NCA/25J/201

0/G1P[8]

Rotavirus A
NC_011502
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 8
JN128991

RVA/Human/NCA/25J/201

0/G1P[8]

Rotavirus A
NC_011503
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 9
JN129117

RVA/Human/NCA/25J/201

0/G1P[8]

Rotavirus A
NC_011504
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg.
JN129019

RVA/Human/NCA/25J/201

10

0/G1P[8]

Rotavirus A
NC_011505
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg.
JN129033

RVA/Human/NCA/25J/201

11

0/G1P[8]

Rotavirus A
NC_011506
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 2
JN129061

RVA/Human/NCA/25J/201

0/G1P[8]

Rotavirus A
NC_011507
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 1
JN129047

RVA/Human/NCA/25J/201

0/G1P[8]

Rotavirus A
NC_011508
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 3

JN129075

RVA/Human/NCA/25J/201

0/G1P[8]

Rotavirus A
NC_011509
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 6
JN129103

RVA/Human/NCA/25J/201

0/G1P[8]

Rotavirus A
NC_011510
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 4
JN129089

RVA/Human/NCA/25J/201

0/G1P[8]

Rotavirus A
NC_011500
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 5
JN128978

RVA/Human/NCA/26J/201

0/G1P[8]

Rotavirus A
NC_011501
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 7
JN129006

RVA/Human/NCA/26J/201

0/G1P[8]

Rotavirus A
NC_011502
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 8
JN128992

RVA/Human/NCA/26J/201

0/G1P[8]

Rotavirus A
NC_011503
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 9
JN129118

RVA/Human/NCA/26J/201

0/G1P[8]

Rotavirus A
NC_011504
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg.
JN129020

RVA/Human/NCA/26J/201

10

0/G1P[8]

Rotavirus A
NC_011505
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg.
JN129034

RVA/Human/NCA/26J/201

11

0/G1P[8]

Rotavirus A
NC_011506
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 2
JN129062

RVA/Human/NCA/26J/201

0/G1P[8]

Rotavirus A
NC_011507
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 1
JN129048

RVA/Human/NCA/26J/201

0/G1P[8]

Rotavirus A
NC_011508
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 3
JN129076

RVA/Human/NCA/26J/201

0/G1P[8]

Rotavirus A
NC_011509
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 6
JN129104

RVA/Human/NCA/26J/201

0/G1P[8]

Rotavirus A
NC_011510
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 4
JN129090

RVA/Human/NCA/26J/201

0/G1P[8]

Rotavirus A
NC_011500
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 5
JN128979

RVA/Human/NCA/28J/201

0/G1P[8]

Rotavirus A
NC_011501
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 7
JN129007

RVA/Human/NCA/28J/201

0/G1P[8]

Rotavirus A
NC_011502
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 8
JN128993

RVA/Human/NCA/28J/201

0/G1P[8]

Rotavirus A
NC_011503
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 9
JN129119

RVA/Human/NCA/28J/201

0/G1P[8]

Rotavirus A
NC_011504
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg.
JN129021

RVA/Human/NCA/28J/201

10

0/G1P[8]

Rotavirus A
NC_011505
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg.
JN129035

RVA/Human/NCA/28J/201

11

0/G1P[8]

Rotavirus A
NC_011506
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 2
JN129063

RVA/Human/NCA/28J/201

0/G1P[8]

Rotavirus A
NC_011507
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 1
JN129049

RVA/Human/NCA/28J/201

0/G1P[8]

Rotavirus A
NC_011508
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 3
JN129077

RVA/Human/NCA/28J/201

0/G1P[8]

Rotavirus A
NC_011509
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 6
JN129105

RVA/Human/NCA/28J/201

0/G1P[8]

Rotavirus A
NC_011510
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 4
JN129091

RVA/Human/NCA/28J/201

0/G1P[8]

Rotavirus A
NC_011500
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 5
JN128980

RVA/Human/NCA/41J/201

0/G1P[8]

Rotavirus A
NC_011501
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 7
JN129008

RVA/Human/NCA/41J/201

0/G1P[8]

Rotavirus A
NC_011502
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 8
JN128994

RVA/Human/NCA/41J/201

0/G1P[8]

Rotavirus A
NC_011503
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 9
JN129120

RVA/Human/NCA/41J/201

0/G1P[8]

Rotavirus A
NC_011504
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg.
JN129022

RVA/Human/NCA/41J/201

10

0/G1P[8]

Rotavirus A
NC_011505
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg.
JN129036

RVA/Human/NCA/41J/201

11

0/G1P[8]

Rotavirus A
NC_011506
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 2
JN129064

RVA/Human/NCA/41J/201

0/G1P[8]

Rotavirus A
NC_011507
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 1
JN129050

RVA/Human/NCA/41J/201

0/G1P[8]

Rotavirus A
NC_011508
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 3
JN129078

RVA/Human/NCA/41J/201

0/G1P[8]

Rotavirus A
NC_011509
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 6
JN129106

RVA/Human/NCA/41J/201

0/G1P[8]

Rotavirus A
NC_011510
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 4
JN129092

RVA/Human/NCA/41J/201

0/G1P[8]

Rotavirus A
NC_011500
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 5
JN128981

RVA/Human/NCA/45J/201

0/G1P[8]

Rotavirus A
NC_011501
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 7
JN129009

RVA/Human/NCA/45J/201

0/G1P[8]

Rotavirus A
NC_011502
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 8
JN128995

RVA/Human/NCA/45J/201

0/G1P[8]

Rotavirus A
NC_011503
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 9
JN129121

RVA/Human/NCA/45J/201

0/G1P[8]

Rotavirus A
NC_011504
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg.
JN129023

RVA/Human/NCA/45J/201

10

0/G1P[8]

Rotavirus A
NC_011505
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg.
JN129037

RVA/Human/NCA/45J/201

11

0/G1P[8]

Rotavirus A
NC_011506
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 2
JN129065

RVA/Human/NCA/45J/201

0/G1P[8]

Rotavirus A
NC_011507
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 1
JN129051

RVA/Human/NCA/45J/201

0/G1P[8]

Rotavirus A
NC_011508
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 3
JN129079

RVA/Human/NCA/45J/201

0/G1P[8]

Rotavirus A
NC_011509
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 6
JN129107

RVA/Human/NCA/45J/201

0/G1P[8]

Rotavirus A
NC_011510
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 4
JN129093

RVA/Human/NCA/45J/201

0/G1P[8]

Rotavirus A
NC_011500
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 5
JN128982

RVA/Human/NCA/64J/201

0/G3P[8]

Rotavirus A
NC_011501
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 7
JN129010

RVA/Human/NCA/64J/201

0/G3P[8]

Rotavirus A
NC_011502
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 8
JN128996

RVA/Human/NCA/64J/201

0/G3P[8]

Rotavirus A
NC_011503
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 9
JN129122

RVA/Human/NCA/64J/201

0/G3P[8]

Rotavirus A
NC_011504
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg.
JN129024

RVA/Human/NCA/64J/201

10

0/G3P[8]

Rotavirus A
NC_011505
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg.
JN129038

RVA/Human/NCA/64J/201

11

0/G3P[8]

Rotavirus A
NC_011506
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 2
JN129066

RVA/Human/NCA/64J/201

0/G3P[8]

Rotavirus A
NC_011507
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 1
JN129052

RVA/Human/NCA/64J/201

0/G3P[8]

\Rotavirus A
NC_011508
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 3
JN129080

RVA/Human/NCA/64J/201

0/G3P[8]

Rotavirus A
NC_011509
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 6
JN129108

RVA/Human/NCA/64J/201

0/G3P[8]

Rotavirus A
NC_011510
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 4
JN129094

RVA/Human/NCA/64J/201

0/G3P[8]

Rotavirus A
NC_011500
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 5
JN128983

RVA/Human/NCA/72J/201

0/G1P[8]

Rotavirus A
NC_011501
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 7
JN129011

RVA/Human/NCA/72J/201

0/G1P[8]

Rotavirus A
NC_011502
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 8
JN128997

RVA/Human/NCA/72J/201

0/G1P[8]

Rotavirus A
NC_011503
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 9
JN129123

RVA/Human/NCA/72J/201

0/G1P[8]

Rotavirus A
NC_011504
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg.
JN129025

RVA/Human/NCA/72J/201

10

0/G1P[8]

Rotavirus A
NC_011505
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg.
JN129039

RVA/Human/NCA/72J/201

11

0/G1P[8]

Rotavirus A
NC_011506
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 2
JN129067

RVA/Human/NCA/72J/201

0/G1P[8]

Rotavirus A
NC_011507
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 1
JN129053

RVA/Human/NCA/72J/201

0/G1P[8]

Rotavirus A
NC_011508
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 3
JN129081

RVA/Human/NCA/72J/201

0/G1P[8]

Rotavirus A
NC_011509
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 6
JN129109

RVA/Human/NCA/72J/201

0/G1P[8]

Rotavirus A
NC_011510
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 4
JN129095

RVA/Human/NCA/72J/201

0/G1P[8]

Rotavirus A
NC_011500
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 5
JN128972

RVA/Human/NCA/7J/2010/

G1P[8]

Rotavirus A
NC_011501
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 7
JN129000

RVA/Human/NCA/7J/2010/

G1P[8]

Rotavirus A
NC_011502
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 8
JN128986

RVA/Human/NCA/7J/2010/

G1P[8]

Rotavirus A
NC_011503
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 9
JN129112

RVA/Human/NCA/7J/2010/

G1P[8]

Rotavirus A
NC_011504
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg.
JN129014

RVA/Human/NCA/7J/2010/

10

G1P[8]

Rotavirus A
NC_011505
vertebrates,human
2
Reoviridae,Rotavirus,Rotavirus A
seg.
JN129028,JN129042

RVA/Human/NCA/7J/2010/

11

G1P[8]

Rotavirus A
NC_011506
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 2
JN129056

RVA/Human/NCA/7J/2010/

G1P[8]

Rotavirus A
NC_011508
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 3
JN129070

RVA/Human/NCA/7J/2010/

G1P[8]

Rotavirus A
NC_011509
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 6
JN129098

RVA/Human/NCA/7J/2010/

G1P[8]

Rotavirus A
NC_011510
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 4
JN129084

RVA/Human/NCA/7J/2010/

G1P[8]

Rotavirus A
NC_011500
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 5
JN128973

RVA/Human/NCA/9J/2010/

G1P[8]

Rotavirus A
NC_011501
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 7
JN129001

RVA/Human/NCA/9J/2010/

G1P[8]

Rotavirus A
NC_011502
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 8
JN128987

RVA/Human/NCA/9J/2010/

G1P[8]

Rotavirus A
NC_011503
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 9
JN129113

RVA/Human/NCA/9J/2010/

G1P[8]

Rotavirus A
NC_011504
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg.
JN129015

RVA/Human/NCA/9J/2010/

10

G1P[8]

Rotavirus A
NC_011505
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg.
JN129029

RVA/Human/NCA/9J/2010/

11

G1P[8]

Rotavirus A
NC_011506
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 2
JN129057

RVA/Human/NCA/9J/2010/

G1P[8]

Rotavirus A
NC_011507
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 1
JN129043

RVA/Human/NCA/9J/2010/

G1P[8]

Rotavirus A
NC_011508
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 3
JN129071

RVA/Human/NCA/9J/2010/

G1P[8]

Rotavirus A
NC_011509
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 6
JN129099

RVA/Human/NCA/9J/2010/

G1P[8]

Rotavirus A
NC_011510
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 4
JN129085

RVA/Human/NCA/9J/2010/

G1P[8]

Rotavirus A
NC_011500
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 5
JN128985

RVA/Human/NCA/0U2010/

G4P[6]

Rotavirus A
NC_011501
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 7
JN129013

RVA/Human/NCA/0U2010/

G4P[6]

Rotavirus A
NC_011502
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 8
JN128999

RVA/Human/NCA/0U2010/

G4P[6]

Rotavirus A
NC_011503
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 9
JN129125

RVA/Human/NCA/0U2010/

G4P[6]

Rotavirus A
NC_011504
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg.
JN129027

RVA/Human/NCA/0U2010/

10

G4P[6]

Rotavirus A
NC_011505
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg.
JN129041

RVA/Human/NCA/0U2010/

11

G4P[6]

Rotavirus A
NC_011506
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 2
JN129069

RVA/Human/NCA/0U2010/

G4P[6]

Rotavirus A
NC_011507
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 1
JN129055

RVA/Human/NCA/0U2010/

G4P[6]

Rotavirus A
NC_011508
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 3
JN129083

RVA/Human/NCA/0U2010/

G4P[6]

Rotavirus A
NC_011509
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 6
JN129111

RVA/Human/NCA/0U2010

/G4P[6]

Rotavirus A
NC_011510
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 4
JN129097

RVA/Human/NCA/0U2010

/G4P[6]

Rotavirus A ST3xUK
NC_011500
vertebrates,human
3
Reoviridae,Rotavirus,Rotavirus A
seg. 5
JF693215,JF693107,

reassortant (UKg9ST3)

JF693173

Rotavirus A ST3xUK
NC_011501
vertebrates,human
2
Reoviridae,Rotavirus,Rotavirus A
seg. 7
JF693176,JF693110

reassortant (UKg9ST3)

Rotavirus A ST3xUK
NC_011502
vertebrates,human
3
Reoviridae,Rotavirus,Rotavirus A
seg. 8
JF693109,JF693175,

reassortant (UKg9ST3)

JF693216

Rotavirus A ST3xUK
NC_011503
vertebrates,human
3
Reoviridae,Rotavirus,Rotavirus A
seg. 9
JF693217,JF693111,

reassortant (UKg9ST3)

JF693177

Rotavirus A ST3xUK
NC_011504
vertebrates,human
2
Reoviridae,Rotavirus,Rotavirus A
seg.
JF693112,JF693178

reassortant (UKg9ST3)

10

Rotavirus A ST3xUK
NC_011505
vertebrates,human
2
Reoviridae,Rotavirus,Rotavirus A
seg.
JF693113,JF693179

reassortant (UKg9ST3)

11

Rotavirus A ST3xUK
NC_011506
vertebrates,human
2
Reoviridae,Rotavirus,Rotavirus A
seg. 2
JF693104,JF693170

reassortant (UKg9ST3)

Rotavirus A ST3xUK
NC_011507
vertebrates,human
2
Reoviridae,Rotavirus,Rotavirus A
seg. 1
JF693169,JF693103

reassortant (UKg9ST3)

Rotavirus A ST3xUK
NC_011508
vertebrates,human
2
Reoviridae,Rotavirus,Rotavirus A
seg. 3
JF693171,JF693105

reassortant (UKg9ST3)

Rotavirus A ST3xUK
NC_011509
vertebrates,human
2
Reoviridae,Rotavirus,Rotavirus A
seg. 6
JF693174,JF693108

reassortant (UKg9ST3)

Rotavirus A ST3xUK
NC_011510
vertebrates,human
3
Reoviridae,Rotavirus,Rotavirus A
seg. 4
JF693214,JF693106,

reassortant (UKg9ST3)

JF693172

Rotavirus A UK WT BR-3
NC_011506
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 2
JF990806

Rotavirus A UK WT BR-3
NC_011507
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 1
JF990805

Rotavirus A UK WT BR-3
NC_011508
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 3
JF990807

Rotavirus A WaxUK
NC_011506
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 2
JF990829

reassortant (UKg4Wa)

Rotavirus A WaxUK
NC_011507
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 1
JF990828

reassortant (UKg4Wa)

Rotavirus A WaxUK
NC_011508
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 3
JF990830

reassortant (UKg4Wa)

Rotavirus A
NC_011501
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 7
FJ347119

bovine/Arg/B383/1998

Rotavirus A
NC_011502
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 8
FJ347118

bovine/Arg/B383/1998

Rotavirus A
NC_011503
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 9
FJ347116

bovine/Arg/B383/1998

Rotavirus A
NC_011504
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg.
FJ347120

bovine/Arg/B383/1998

10

Rotavirus A
NC_011505
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg.
FJ347121

bovine/Arg/B383/1998

11

Rotavirus A
NC_011506
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 2
FJ347112

bovine/Arg/B383/1998

Rotavirus A
NC_011507
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 1
FJ347111

bovine/Arg/B383/1998

Rotavirus A
NC_011508
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 3
FJ347113

bovine/Arg/B383/1998

Rotavirus A
NC_011509
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 6
FJ347115

bovine/Arg/B383/1998

Rotavirus A
NC_011504
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg.
AF144805

bovine/B223/G10

10

Rotavirus A
NC_011501
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 7
FJ347108

guanaco/Arg/Chubut/1999

Rotavirus A
NC_011502
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 8
FJ347107

guanaco/Arg/Chubut/1999

Rotavirus A
NC_011503
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 9
FJ347105

guanaco/Arg/Chubut/1999

Rotavirus A
NC_011504
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg.
FJ347109

guanaco/Arg/Chubut/1999

10

Rotavirus A
NC_011505
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg.
FJ347110

guanaco/Arg/Chubut/1999

11

Rotavirus A
NC_011506
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 2
FJ347101

guanaco/Arg/Chubut/1999

Rotavirus A
NC_011507
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 1
FJ347100

guanaco/Arg/Chubut/1999

Rotavirus A
NC_011508
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 3
FJ347102

guanaco/Arg/Chubut/1999

Rotavirus A
NC_011509
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 6
FJ347104

guanaco/Arg/Chubut/1999

Rotavirus A
NC_011510
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 4
FJ347103

guanaco/Arg/Chubut/1999

Rotavirus A
NC_011501
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 7
FJ347130

guanaco/Arg/Rio

Negro/1998

Rotavirus A
NC_011502
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 8
FJ347129

guanaco/Arg/Rio

Negro/1998

Rotavirus A
NC_011503
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 9
FJ347127

guanaco/Arg/Rio

Negro/1998

Rotavirus A
NC_011504
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg.
FJ347131

guanaco/Arg/Rio

10

Negro/1998

Rotavirus A
NC_011505
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg.
FJ347132

guanaco/Arg/Rio

11

Negro/1998

Rotavirus A
NC_011506
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 2
FJ347123

guanaco/Arg/Rio

Negro/1998

Rotavirus A
NC_011507
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 1
FJ347122

guanaco/Arg/Rio

Negro/1998

Rotavirus A
NC_011508
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 3
FJ347124

guanaco/Arg/Rio

Negro/1998

Rotavirus A
NC_011509
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 6
FJ347126

guanaco/Arg/Rio

Negro/1998

Rotavirus A
NC_011510
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 4
FJ347125

guanaco/Arg/Rio

Negro/1998

Rotavirus A human-
NC_011503
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 9
KC782524

wt/USA/LB1562/2010/G9P

4

Rotavirus A human-
NC_011506
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 2
KC782520

wt/USA/LB1562/2010/G9P

4

Rotavirus A human-
NC_011507
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 1
KC782519

wt/USA/LB1562/2010/G9P

4

Rotavirus A human-
NC_011508
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 3
KC782521

wt/USA/LB1562/2010/G9P

4

Rotavirus A
NC_011500
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 5
FJ947432

human/Bethesda/CH5446/

1991/G3P[8]

Rotavirus A
NC_011501
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 7
FJ947434

human/Bethesda/CH5446/

1991/G3P[8]

Rotavirus A
NC_011502
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 8
FJ947435

human/Bethesda/CH5446/

1991/G3P[8]

Rotavirus A
NC_011504
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg.
FJ947437

human/Bethesda/CH5446/

10

1991/G3P[8]

Rotavirus A
NC_011505
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg.
FJ947438

human/Bethesda/CH5446/

11

1991/G3P[8]

Rotavirus A
NC_011506
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 2
FJ947429

human/Bethesda/CH5446/

1991/G3P[8]

Rotavirus A
NC_011508
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 3
FJ947430

human/Bethesda/CH5446/

1991/G3P[8]

Rotavirus A
NC_011509
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 6
FJ947433

human/Bethesda/CH5446/

1991/G3P[8]

Rotavirus A
NC_011510
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 4
FJ947431

human/Bethesda/CH5446/

1991/G3P[8]

Rotavirus A
NC_011500
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 5
FJ947896

human/Bethesda/CH5455/

1991/G3P[8]

Rotavirus A
NC_011501
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 7
FJ947898

human/Bethesda/CH5455/

1991/G3P[8]

Rotavirus A
NC_011502
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 8
FJ947899

human/Bethesda/CH5455/

1991/G3P[8]

Rotavirus A
NC_011504
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg.
FJ947901

human/Bethesda/CH5455/

10

1991/G3P[8]

Rotavirus A
NC_011505
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg.
FJ947902

human/Bethesda/CH5455/

11

1991/G3P[8]

Rotavirus A
NC_011506
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 2
FJ947893

human/Bethesda/CH5455/

1991/G3P[8]

Rotavirus A
NC_011508
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 3
FJ947894

human/Bethesda/CH5455/

1991/G3P[8]

Rotavirus A
NC_011509
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 6
FJ947897

human/Bethesda/CH5455/

1991/G3P[8]

Rotavirus A
NC_011510
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 4
FJ947895

human/Bethesda/CH5455/

1991/G3P[8]

Rotavirus A
NC_011500
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 5
FJ947443

human/Bethesda/CH5459/

1991/G3P[8]

Rotavirus A
NC_011501
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 7
FJ947445

human/Bethesda/CH5459/

1991/G3P[8]

Rotavirus A
NC_011502
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 8
FJ947446

human/Bethesda/CH5459/

1991/G3P[8]

Rotavirus A
NC_011504
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg.
FJ947448

human/Bethesda/CH5459/

10

1991/G3P[8]

Rotavirus A
NC_011505
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg.
FJ947449

human/Bethesda/CH5459/

11

1991/G3P[8]

Rotavirus A
NC_011508
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 3
FJ947441

human/Bethesda/CH5459/

1991/G3P[8]

Rotavirus A
NC_011509
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 6
FJ947444

human/Bethesda/CH5459/

1991/G3P[8]

Rotavirus A
NC_011510
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 4
FJ947442

human/Bethesda/CH5459/

1991/G3P[8]

Rotavirus A
NC_011501
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 7
FJ947909

human/Bethesda/CH5470/

1991/G3P[8]

Rotavirus A
NC_011502
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 8
FJ947910

human/Bethesda/CH5470/

1991/G3P[8]

Rotavirus A
NC_011504
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg.
FJ947912

human/Bethesda/CH5470/

10

1991/G3P[8]

Rotavirus A
NC_011505
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg.
FJ947913

human/Bethesda/CH5470/

11

1991/G3P[8]

Rotavirus A
NC_011508
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 3
FJ947905

human/Bethesda/CH5470/

1991/G3P[8]

Rotavirus A
NC_011509
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 6
FJ947908

human/Bethesda/CH5470/

1991/G3P[8]

Rotavirus A
NC_011510
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 4
FJ947906

human/Bethesda/CH5470/

1991/G3P[8]

Rotavirus A
NC_011500
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 5
FJ947454

human/Bethesda/CH5475/

1991/G3P[8]

Rotavirus A
NC_011501
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 7
FJ947456

human/Bethesda/CH5475/

1991/G3P[8]

Rotavirus A
NC_011502
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 8
FJ947457

human/Bethesda/CH5475/

1991/G3P[8]

Rotavirus A
NC_011504
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg.
FJ947459

human/Bethesda/CH5475/

10

1991/G3P[8]

Rotavirus A
NC_011505
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg.
FJ947460

human/Bethesda/CH5475/

11

1991/G3P[8]

Rotavirus A
NC_011508
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 3
FJ947452

human/Bethesda/CH5475/

1991/G3P[8]

Rotavirus A
NC_011509
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 6
FJ947455

human/Bethesda/CH5475/

1991/G3P[8]

Rotavirus A
NC_011510
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 4
FJ947453

human/Bethesda/CH5475/

1991/G3P[8]

Rotavirus A
NC_011501
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 7
FJ947467

human/Bethesda/CH5477/

1991/G3P[8]

Rotavirus A
NC_011502
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 8
FJ947468

human/Bethesda/CH5477/

1991/G3P[8]

Rotavirus A
NC_011504
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg.
FJ947470

human/Bethesda/CH5477/

10

1991/G3P[8]

Rotavirus A
NC_011505
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg.
FJ947471

human/Bethesda/CH5477/

11

1991/G3P[8]

Rotavirus A
NC_011506
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 2
FJ947462

human/Bethesda/CH5477/

1991/G3P[8]

Rotavirus A
NC_011508
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 3
FJ947463

human/Bethesda/CH5477/

1991/G3P[8]

Rotavirus A
NC_011509
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 6
FJ947466

human/Bethesda/CH5477/

1991/G3P[8]

Rotavirus A
NC_011510
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 4
FJ947464

human/Bethesda/CH5477/

1991/G3P[8]

Rotavirus A
NC_011501
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 7
FJ947920

human/Bethesda/CH5483/

1991/G3P[8]

Rotavirus A
NC_011502
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 8
FJ947921

human/Bethesda/CH5483/

1991/G3P[8]

Rotavirus A
NC_011504
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg.
FJ947923

human/Bethesda/CH5483/

10

1991/G3P[8]

Rotavirus A
NC_011505
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg.
FJ947924

human/Bethesda/CH5483/

11

1991/G3P[8]

Rotavirus A
NC_011508
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 3
FJ947916

human/Bethesda/CH5483/

1991/G3P[8]

Rotavirus A
NC_011509
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 6
FJ947919

human/Bethesda/CH5483/

1991/G3P[8]

Rotavirus A
NC_011510
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 4
FJ947917

human/Bethesda/CH5483/

1991/G3P[8]

Rotavirus A
NC_011500
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 5
FJ947476

human/Bethesda/CH5484/

1991/G3P[8]

Rotavirus A
NC_011501
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 7
FJ947478

human/Bethesda/CH5484/

1991/G3P[8]

Rotavirus A
NC_011502
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 8
FJ947479

human/Bethesda/CH5484/

1991/G3P[8]

Rotavirus A
NC_011504
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg.
FJ947481

human/Bethesda/CH5484/

10

1991/G3P[8]

Rotavirus A
NC_011505
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg.
FJ947482

human/Bethesda/CH5484/

11

1991/G3P[8]

Rotavirus A
NC_011508
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 3
FJ947474

human/Bethesda/CH5484/

1991/G3P[8]

Rotavirus A
NC_011509
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 6
FJ947477

human/Bethesda/CH5484/

1991/G3P[8]

Rotavirus A
NC_011510
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 4
FJ947475

human/Bethesda/CH5484/

1991/G3P[8]

Rotavirus A
NC_011500
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 5
FJ947487

human/Bethesda/CH5488/

1991/G3P[8]

Rotavirus A
NC_011501
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 7
FJ947489

human/Bethesda/CH5488/

1991/G3P[8]

Rotavirus A
NC_011502
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 8
FJ947490

human/Bethesda/CH5488/

1991/G3P[8]

Rotavirus A
NC_011504
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg.
FJ947492

human/Bethesda/CH5488/

10

1991/G3P[8]

Rotavirus A
NC_011505
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg.
FJ947493

human/Bethesda/CH5488/

11

1991/G3P[8]

Rotavirus A
NC_011508
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 3
FJ947485

human/Bethesda/CH5488/

1991/G3P[8]

Rotavirus A
NC_011509
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 6
FJ947488

human/Bethesda/CH5488/

1991/G3P[8]

Rotavirus A
NC_011510
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 4
FJ947486

human/Bethesda/CH5488/

1991/G3P[8]

Rotavirus A
NC_011501
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 7
FJ947931

human/Bethesda/CH5498/

1991/G3P[8]

Rotavirus A
NC_011502
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 8
FJ947932

human/Bethesda/CH5498/

1991/G3P[8]

Rotavirus A
NC_011504
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg.
FJ947934

human/Bethesda/CH5498/

10

1991/G3P[8]

Rotavirus A
NC_011505
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg.
FJ947935

human/Bethesda/CH5498/

11

1991/G3P[8]

Rotavirus A
NC_011506
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 2
FJ947926

human/Bethesda/CH5498/

1991/G3P[8]

Rotavirus A
NC_011508
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 3
FJ947927

human/Bethesda/CH5498/

1991/G3P[8]

Rotavirus A
NC_011509
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 6
FJ947930

human/Bethesda/CH5498/

1991/G3P[8]

Rotavirus A
NC_011510
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 4
FJ947928

human/Bethesda/CH5498/

1991/G3P[8]

Rotavirus A
NC_011500
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 5
HM773858

human/Bethesda/DC1208/

1980/G4P[8]

Rotavirus A
NC_011501
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 7
HM773860

human/Bethesda/DC1208/

1980/G4P[8]

Rotavirus A
NC_011502
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 8
HM773861

human/Bethesda/DC1208/

1980/G4P[8]

Rotavirus A
NC_011503
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 9
HM773862

human/Bethesda/DC1208/

1980/G4P[8]

Rotavirus A
NC_011504
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg.
HM773863

human/Bethesda/DC1208/

10

1980/G4P[8]

Rotavirus A
NC_011505
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg.
HM773864

human/Bethesda/DC1208/

11

1980/G4P[8]

Rotavirus A
NC_011506
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 2
HM773855

human/Bethesda/DC1208/

1980/G4P[8]

Rotavirus A
NC_011507
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 1
HM773854

human/Bethesda/DC1208/

1980/G4P[8]

Rotavirus A
NC_011508
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 3
HM773856

human/Bethesda/DC1208/

1980/G4P[8]

Rotavirus A
NC_011509
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 6
HM773859

human/Bethesda/DC1208/

1980/G4P[8]

Rotavirus A
NC_011510
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 4
HM773857

human/Bethesda/DC1208/

1980/G4P[8]

Rotavirus A
NC_011500
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 5
FJ947168

human/Bethesda/DC1285/

1980/G4P[8]

Rotavirus A
NC_011501
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 7
FJ947170

human/Bethesda/DC1285/

1980/G4P[8]

Rotavirus A
NC_011502
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 8
FJ947171

human/Bethesda/DC1285/

1980/G4P[8]

Rotavirus A
NC_011503
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 9
FJ947172

human/Bethesda/DC1285/

1980/G4P[8]

Rotavirus A
NC_011504
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg.
FJ947173

human/Bethesda/DC1285/

10

1980/G4P[8]

Rotavirus A
NC_011505
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg.
FJ947174

human/Bethesda/DC1285/

11

1980/G4P[8]

Rotavirus A
NC_011506
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 2
FJ947165

human/Bethesda/DC1285/

1980/G4P[8]

Rotavirus A
NC_011507
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 1
FJ947164

human/Bethesda/DC1285/

1980/G4P[8]

Rotavirus A
NC_011508
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 3
FJ947166

human/Bethesda/DC1285/

1980/G4P[8]

Rotavirus A
NC_011509
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 6
FJ947169

human/Bethesda/DC1285/

1980/G4P[8]

Rotavirus A
NC_011510
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 4
FJ947167

human/Bethesda/DC1285/

1980/G4P[8]

Rotavirus A
NC_011500
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 5
FJ947234

human/Bethesda/DC129/1

976/G3P[8]

Rotavirus A
NC_011501
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 7
FJ947236

human/Bethesda/DC129/1

976/G3P[8]

Rotavirus A
NC_011502
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 8
FJ947237

human/Bethesda/DC129/1

976/G3P[8]

Rotavirus A
NC_011504
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg.
FJ947239

human/Bethesda/DC129/1

10

976/G3P[8]

Rotavirus A
NC_011505
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg.
FJ947240

human/Bethesda/DC129/1

11

976/G3P[8]

Rotavirus A
NC_011506
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 2
FJ947231

human/Bethesda/DC129/1

976/G3P[8]

Rotavirus A
NC_011508
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 3
FJ947232

human/Bethesda/DC129/1

976/G3P[8]

Rotavirus A
NC_011509
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 6
FJ947235

human/Bethesda/DC129/1

976/G3P[8]

Rotavirus A
NC_011510
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 4
FJ947233

human/Bethesda/DC129/1

976/G3P[8]

Rotavirus A
NC_011500
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 5
FJ947245

human/Bethesda/DC130/1

976/G3P[8]

Rotavirus A
NC_011501
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 7
FJ947247

human/Bethesda/DC130/1

976/G3P[8]

Rotavirus A
NC_011502
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 8
FJ947248

human/Bethesda/DC130/1

976/G3P[8]

Rotavirus A
NC_011504
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg.
FJ947250

human/Bethesda/DC130/1

10

976/G3P[8]

Rotavirus A
NC_011505
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg.
FJ947251

human/Bethesda/DC130/1

11

976/G3P[8]

Rotavirus A
NC_011506
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 2
FJ947242

human/Bethesda/DC130/1

976/G3P[8]

Rotavirus A
NC_011508
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 3
FJ947243

human/Bethesda/DC130/1

976/G3P[8]

Rotavirus A
NC_011509
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 6
FJ947246

human/Bethesda/DC130/1

976/G3P[8]

Rotavirus A
NC_011510
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 4
FJ947244

human/Bethesda/DC130/1

976/G3P[8]

Rotavirus A
NC_011500
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 5
FJ947256

human/Bethesda/DC131/1

976/G3P[8]

Rotavirus A
NC_011501
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 7
FJ947258

human/Bethesda/DC131/1

976/G3P[8]

Rotavirus A
NC_011502
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 8
FJ947259

human/Bethesda/DC131/1

976/G3P[8]

Rotavirus A
NC_011503
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 9
FJ947260

human/Bethesda/DC131/1

976/G3P[8]

Rotavirus A
NC_011504
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg.
FJ947261

human/Bethesda/DC131/1

10

976/G3P[8]

Rotavirus A
NC_011505
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg.
FJ947262

human/Bethesda/DC131/1

11

976/G3P[8]

Rotavirus A
NC_011508
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 3
FJ947254

human/Bethesda/DC131/1

976/G3P[8]

Rotavirus A
NC_011509
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 6
FJ947257

human/Bethesda/DC131/1

976/G3P[8]

Rotavirus A
NC_011510
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 4
FJ947255

human/Bethesda/DC131/1

976/G3P[8]

Rotavirus A
NC_011500
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 5
FJ947267

human/Bethesda/DC133/1

976/G3P[8]

Rotavirus A
NC_011501
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 7
FJ947269

human/Bethesda/DC133/1

976/G3P[8]

Rotavirus A
NC_011502
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 8
FJ947270

human/Bethesda/DC133/1

976/G3P[8]

Rotavirus A
NC_011504
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg.
FJ947272

human/Bethesda/DC133/1

10

976/G3P[8]

Rotavirus A
NC_011505
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg.
FJ947273

human/Bethesda/DC133/1

11

976/G3P[8]

Rotavirus A
NC_011506
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 2
FJ947264

human/Bethesda/DC133/1

976/G3P[8]

Rotavirus A
NC_011508
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 3
FJ947265

human/Bethesda/DC133/1

976/G3P[8]

Rotavirus A
NC_011509
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 6
FJ947268

human/Bethesda/DC133/1

976/G3P[8]

Rotavirus A
NC_011510
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 4
FJ947266

human/Bethesda/DC133/1

976/G3P[8]

Rotavirus A
NC_011500
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 5
FJ947311

human/Bethesda/DC135/1

979/G3P[8]

Rotavirus A
NC_011501
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 7
FJ947313

human/Bethesda/DC135/1

979/G3P[8]

Rotavirus A
NC_011502
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 8
FJ947314

human/Bethesda/DC135/1

979/G3P[8]

Rotavirus A
NC_011504
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg.
FJ947316

human/Bethesda/DC135/1

10

979/G3P[8]

Rotavirus A
NC_011505
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg.
FJ947317

human/Bethesda/DC135/1

11

979/G3P[8]

Rotavirus A
NC_011506
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 2
FJ947308

human/Bethesda/DC135/1

979/G3P[8]

Rotavirus A
NC_011509
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 6
FJ947312

human/Bethesda/DC135/1

979/G3P[8]

Rotavirus A
NC_011510
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 4
FJ947310

human/Bethesda/DC135/1

979/G3P[8]

Rotavirus A
NC_011500
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 5
HM773869

human/Bethesda/DC1359/

1980/G4P[8]

Rotavirus A
NC_011501
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 7
HM773871

human/Bethesda/DC1359/

1980/G4P[8]

Rotavirus A
NC_011502
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 8
HM773872

human/Bethesda/DC1359/

1980/G4P[8]

Rotavirus A
NC_011503
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 9
HM773873

human/Bethesda/DC1359/

1980/G4P[8]

Rotavirus A
NC_011504
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg.
HM773874

human/Bethesda/DC1359/

10

1980/G4P[8]

Rotavirus A
NC_011505
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg.
HM773875

human/Bethesda/DC1359/

11

1980/G4P[8]

Rotavirus A
NC_011506
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 2
HM773866

human/Bethesda/DC1359/

1980/G4P[8]

Rotavirus A
NC_011507
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 1
HM773865

human/Bethesda/DC1359/

1980/G4P[8]

Rotavirus A
NC_011508
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 3
HM773867

human/Bethesda/DC1359/

1980/G4P[8]

Rotavirus A
NC_011509
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 6
HM773870

human/Bethesda/DC1359/

1980/G4P[8]

Rotavirus A
NC_011510
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 4
HM773868

human/Bethesda/DC1359/

1980/G4P[8]

Rotavirus A
NC_011500
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 5
FJ947223

human/Bethesda/DC139/1

976/G3P[8]

Rotavirus A
NC_011501
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 7
FJ947225

human/Bethesda/DC139/1

976/G3P[8]

Rotavirus A
NC_011502
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 8
FJ947226

human/Bethesda/DC139/1

976/G3P[8]

Rotavirus A
NC_011504
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg.
FJ947228

human/Bethesda/DC139/1

10

976/G3P[8]

Rotavirus A
NC_011505
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg.
FJ947229

human/Bethesda/DC139/1

11

976/G3P[8]

Rotavirus A
NC_011506
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 2
FJ947220

human/Bethesda/DC139/1

976/G3P[8]

Rotavirus A
NC_011508
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 3
FJ947221

human/Bethesda/DC139/1

976/G3P[8]

Rotavirus A
NC_011509
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 6
FJ947224

human/Bethesda/DC139/1

976/G3P[8]

Rotavirus A
NC_011510
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 4
FJ947222

human/Bethesda/DC139/1

976/G3P[8]

Rotavirus A
NC_011500
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 5
FJ947742

human/Bethesda/DC140/1

975/G3P[8]

Rotavirus A
NC_011501
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 7
FJ947744

human/Bethesda/DC140/1

975/G3P[8]

Rotavirus A
NC_011502
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 8
FJ947745

human/Bethesda/DC140/1

975/G3P[8]

Rotavirus A
NC_011503
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 9
FJ947746

human/Bethesda/DC140/1

975/G3P[8]

Rotavirus A
NC_011504
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg.
FJ947747

human/Bethesda/DC140/1

10

975/G3P[8]

Rotavirus A
NC_011505
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg.
FJ947748

human/Bethesda/DC140/1

11

975/G3P[8]

Rotavirus A
NC_011507
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 1
FJ947738

human/Bethesda/DC140/1

975/G3P[8]

Rotavirus A
NC_011508
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 3
FJ947740

human/Bethesda/DC140/1

975/G3P[8]

Rotavirus A
NC_011510
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 4
FJ947741

human/Bethesda/DC140/1

975/G3P[8]

Rotavirus A
NC_011500
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 5
FJ947190

human/Bethesda/DC1455/

1975/G3P[8]

Rotavirus A
NC_011501
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 7
FJ947192

human/Bethesda/DC1455/

1975/G3P[8]

Rotavirus A
NC_011502
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 8
FJ947193

human/Bethesda/DC1455/

1975/G3P[8]

Rotavirus A
NC_011504
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg.
FJ947195

human/Bethesda/DC1455/

10

1975/G3P[8]

Rotavirus A
NC_011505
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg.
FJ947196

human/Bethesda/DC1455/

11

1975/G3P[8]

Rotavirus A
NC_011506
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 2
FJ947187

human/Bethesda/DC1455/

1975/G3P[8]

Rotavirus A
NC_011507
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 1
FJ947186

human/Bethesda/DC1455/

1975/G3P[8]

Rotavirus A
NC_011508
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 3
FJ947188

human/Bethesda/DC1455/

1975/G3P[8]

Rotavirus A
NC_011509
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 6
FJ947191

human/Bethesda/DC1455/

1975/G3P[8]

Rotavirus A
NC_011510
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 4
FJ947189

human/Bethesda/DC1455/

1975/G3P[8]

Rotavirus A
NC_011500
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 5
FJ947278

human/Bethesda/DC1494/

1976/G3P[8]

Rotavirus A
NC_011501
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 7
FJ947280

human/Bethesda/DC1494/

1976/G3P[8]

Rotavirus A
NC_011502
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 8
FJ947281

human/Bethesda/DC1494/

1976/G3P[8]

Rotavirus A
NC_011504
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg.
FJ947283

human/Bethesda/DC1494/

10

1976/G3P[8]

Rotavirus A
NC_011505
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg.
FJ947284

human/Bethesda/DC1494/

11

1976/G3P[8]

Rotavirus A
NC_011506
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 2
FJ947275

human/Bethesda/DC1494/

1976/G3P[8]

Rotavirus A
NC_011508
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 3
FJ947276

human/Bethesda/DC1494/

1976/G3P[8]

Rotavirus A
NC_011509
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 6
FJ947279

human/Bethesda/DC1494/

1976/G3P[8]

Rotavirus A
NC_011510
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 4
FJ947277

human/Bethesda/DC1494/

1976/G3P[8]

Rotavirus A
NC_011500
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 5
FJ947289

human/Bethesda/DC1496/

1976/G3P[8]

Rotavirus A
NC_011501
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 7
FJ947291

human/Bethesda/DC1496/

1976/G3P[8]

Rotavirus A
NC_011502
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 8
FJ947292

human/Bethesda/DC1496/

1976/G3P[8]

Rotavirus A
NC_011504
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg.
FJ947294

human/Bethesda/DC1496/

10

1976/G3P[8]

Rotavirus A
NC_011505
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg.
FJ947295

human/Bethesda/DC1496/

11

1976/G3P[8]

Rotavirus A
NC_011506
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 2
FJ947286

human/Bethesda/DC1496/

1976/G3P[8]

Rotavirus A
NC_011508
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 3
FJ947287

human/Bethesda/DC1496/

1976/G3P[8]

Rotavirus A
NC_011509
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 6
FJ947290

human/Bethesda/DC1496/

1976/G3P[8]

Rotavirus A
NC_011510
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 4
FJ947288

human/Bethesda/DC1496/

1976/G3P[8]

Rotavirus A
NC_011500
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 5
FJ947344

human/Bethesda/DC1497/

1976/G3P[8]

Rotavirus A
NC_011501
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 7
FJ947346

human/Bethesda/DC1497/

1976/G3P[8]

Rotavirus A
NC_011502
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 8
FJ947347

human/Bethesda/DC1497/

1976/G3P[8]

Rotavirus A
NC_011504
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg.
FJ947349

human/Bethesda/DC1497/

10

1976/G3P[8]

Rotavirus A
NC_011505
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg.
FJ947350

human/Bethesda/DC1497/

11

1976/G3P[8]

Rotavirus A
NC_011507
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 1
FJ947340

human/Bethesda/DC1497/

1976/G3P[8]

Rotavirus A
NC_011508
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 3
FJ947342

human/Bethesda/DC1497/

1976/G3P[8]

Rotavirus A
NC_011509
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 6
FJ947345

human/Bethesda/DC1497/

1976/G3P[8]

Rotavirus A
NC_011510
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 4
FJ947343

human/Bethesda/DC1497/

1976/G3P[8]

Rotavirus A
NC_011500
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 5
FJ947355

human/Bethesda/DC1505/

1976/G3P[8]

Rotavirus A
NC_011501
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 7
FJ947357

human/Bethesda/DC1505/

1976/G3P[8]

Rotavirus A
NC_011502
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 8
FJ947358

human/Bethesda/DC1505/

1976/G3P[8]

Rotavirus A
NC_011504
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg.
FJ947360

human/Bethesda/DC1505/

10

1976/G3P[8]

Rotavirus A
NC_011505
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg.
FJ947361

human/Bethesda/DC1505/

11

1976/G3P[8]

Rotavirus A
NC_011507
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 1
FJ947351

human/Bethesda/DC1505/

1976/G3P[8]

Rotavirus A
NC_011508
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 3
FJ947353

human/Bethesda/DC1505/

1976/G3P[8]

Rotavirus A
NC_011509
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 6
FJ947356

human/Bethesda/DC1505/

1976/G3P[8]

Rotavirus A
NC_011510
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 4
FJ947354

human/Bethesda/DC1505/

1976/G3P[8]

Rotavirus A
NC_011500
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 5
FJ947179

human/Bethesda/DC1563/

1974/G3P[8]

Rotavirus A
NC_011501
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 7
FJ947181

human/Bethesda/DC1563/

1974/G3P[8]

Rotavirus A
NC_011502
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 8
FJ947182

human/Bethesda/DC1563/

1974/G3P[8]

Rotavirus A
NC_011504
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg.
FJ947184

human/Bethesda/DC1563/

10

1974/G3P[8]

Rotavirus A
NC_011505
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg.
FJ947185

human/Bethesda/DC1563/

11

1974/G3P[8]

Rotavirus A
NC_011506
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 2
FJ947176

human/Bethesda/DC1563/

1974/G3P[8]

Rotavirus A
NC_011508
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 3
FJ947177

human/Bethesda/DC1563/

1974/G3P[8]

Rotavirus A
NC_011509
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 6
FJ947180

human/Bethesda/DC1563/

1974/G3P[8]

Rotavirus A
NC_011510
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 4
FJ947178

human/Bethesda/DC1563/

1974/G3P[8]

Rotavirus A
NC_011500
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 5
FJ947775

human/Bethesda/DC1600/

1980/G3P[8]

Rotavirus A
NC_011501
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 7
FJ947777

human/Bethesda/DC1600/

1980/G3P[8]

Rotavirus A
NC_011502
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 8
FJ947778

human/Bethesda/DC1600/

1980/G3P[8]

Rotavirus A
NC_011504
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg.
FJ947780

human/Bethesda/DC1600/

10

1980/G3P[8]

Rotavirus A
NC_011505
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg.
FJ947781

human/Bethesda/DC1600/

11

1980/G3P[8]

Rotavirus A
NC_011506
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 2
FJ947772

human/Bethesda/DC1600/

1980/G3P[8]

Rotavirus A
NC_011507
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 1
FJ947771

human/Bethesda/DC1600/

1980/G3P[8]

Rotavirus A
NC_011508
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 3
FJ947773

human/Bethesda/DC1600/

1980/G3P[8]

Rotavirus A
NC_011509
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 6
FJ947776

human/Bethesda/DC1600/

1980/G3P[8]

Rotavirus A
NC_011510
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 4
FJ947774

human/Bethesda/DC1600/

1980/G3P[8]

Rotavirus A
NC_011500
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 5
FJ947753

human/Bethesda/DC168/1

976/G3P[8]

Rotavirus A
NC_011501
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 7
FJ947755

human/Bethesda/DC168/1

976/G3P[8]

Rotavirus A
NC_011502
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 8
FJ947756

human/Bethesda/DC168/1

976/G3P[8]

Rotavirus A
NC_011503
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 9
FJ947757

human/Bethesda/DC168/1

976/G3P[8]

Rotavirus A
NC_011504
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg.
FJ947758

human/Bethesda/DC168/1

10

976/G3P[8]

Rotavirus A
NC_011505
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg.
FJ947759

human/Bethesda/DC168/1

11

976/G3P[8]

Rotavirus A
NC_011508
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 3
FJ947751

human/Bethesda/DC168/1

976/G3P[8]

Rotavirus A
NC_011509
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 6
FJ947754

human/Bethesda/DC168/1

976/G3P[8]

Rotavirus A
NC_011510
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 4
FJ947752

human/Bethesda/DC168/1

976/G3P[8]

Rotavirus A
NC_011500
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 5
FJ947322

human/Bethesda/DC1730/

1979/G3P[8]

Rotavirus A
NC_011501
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 7
FJ947324

human/Bethesda/DC1730/

1979/G3P[8]

Rotavirus A
NC_011502
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 8
FJ947325

human/Bethesda/DC1730/

1979/G3P[8]

Rotavirus A
NC_011504
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg.
FJ947327

human/Bethesda/DC1730/

10

1979/G3P[8]

Rotavirus A
NC_011505
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg.
FJ947328

human/Bethesda/DC1730/

11

1979/G3P[8]

Rotavirus A
NC_011509
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 6
FJ947323

human/Bethesda/DC1730/

1979/G3P[8]

Rotavirus A
NC_011510
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 4
FJ947321

human/Bethesda/DC1730/

1979/G3P[8]

Rotavirus A
NC_011500
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 5
FJ947300

human/Bethesda/DC1898/

1976/G3P[8]

Rotavirus A
NC_011501
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 7
FJ947302

human/Bethesda/DC1898/

1976/G3P[8]

Rotavirus A
NC_011502
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 8
FJ947303

human/Bethesda/DC1898/

1976/G3P[8]

Rotavirus A
NC_011504
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg.
FJ947305

human/Bethesda/DC1898/

10

1976/G3P[8]

Rotavirus A
NC_011505
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg.
FJ947306

human/Bethesda/DC1898/

11

1976/G3P[8]

Rotavirus A
NC_011508
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 3
FJ947298

human/Bethesda/DC1898/

1976/G3P[8]

Rotavirus A
NC_011509
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 6
FJ947301

human/Bethesda/DC1898/

1976/G3P[8]

Rotavirus A
NC_011510
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 4
FJ947299

human/Bethesda/DC1898/

1976/G3P[8]

Rotavirus A
NC_011500
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 5
FJ947808

human/Bethesda/DC2069/

1976/G3P[8]

Rotavirus A
NC_011501
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 7
FJ947810

human/Bethesda/DC2069/

1976/G3P[8]

Rotavirus A
NC_011502
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 8
FJ947811

human/Bethesda/DC2069/

1976/G3P[8]

Rotavirus A
NC_011504
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg.
FJ947813

human/Bethesda/DC2069/

10

1976/G3P[8]

Rotavirus A
NC_011505
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg.
FJ947814

human/Bethesda/DC2069/

11

1976/G3P[8]

Rotavirus A
NC_011507
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 1
FJ947804

human/Bethesda/DC2069/

1976/G3P[8]

Rotavirus A
NC_011508
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 3
FJ947806

human/Bethesda/DC2069/

1976/G3P[8]

Rotavirus A
NC_011509
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 6
FJ947809

human/Bethesda/DC2069/

1976/G3P[8]

Rotavirus A
NC_011510
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 4
FJ947807

human/Bethesda/DC2069/

1976/G3P[8]

Rotavirus A
NC_011500
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 5
FJ947819

human/Bethesda/DC2081/

1976/G3P[8]

Rotavirus A
NC_011501
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 7
FJ947821

human/Bethesda/DC2081/

1976/G3P[8]

Rotavirus A
NC_011502
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 8
FJ947822

human/Bethesda/DC2081/

1976/G3P[8]

Rotavirus A
NC_011504
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg.
FJ947824

human/Bethesda/DC2081/

10

1976/G3P[8]

Rotavirus A
NC_011505
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg.
FJ947825

human/Bethesda/DC2081/

11

1976/G3P[8]

Rotavirus A
NC_011508
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 3
FJ947817

human/Bethesda/DC2081/

1976/G3P[8]

Rotavirus A
NC_011509
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 6
FJ947820

human/Bethesda/DC2081/

1976/G3P[8]

Rotavirus A
NC_011510
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 4
FJ947818

human/Bethesda/DC2081/

1976/G3P[8]

Rotavirus A
NC_011500
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 5
FJ947830

human/Bethesda/DC2102/

1976/G3P[8]

Rotavirus A
NC_011501
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 7
FJ947832

human/Bethesda/DC2102/

1976/G3P[8]

Rotavirus A
NC_011502
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 8
FJ947833

human/Bethesda/DC2102/

1976/G3P[8]

Rotavirus A
NC_011504
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg.
FJ947835

human/Bethesda/DC2102/

10

1976/G3P[8]

Rotavirus A
NC_011505
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg.
FJ947836

human/Bethesda/DC2102/

11

1976/G3P[8]

Rotavirus A
NC_011506
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 2
FJ947827

human/Bethesda/DC2102/

1976/G3P[8]

Rotavirus A
NC_011508
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 3
FJ947828

human/Bethesda/DC2102/

1976/G3P[8]

Rotavirus A
NC_011509
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 6
FJ947831

human/Bethesda/DC2102/

1976/G3P[8]

Rotavirus A
NC_011510
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 4
FJ947829

human/Bethesda/DC2102/

1976/G3P[8]

Rotavirus A
NC_011500
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 5
FJ947841

human/Bethesda/DC2106/

1976/G3P[8]

Rotavirus A
NC_011501
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 7
FJ947843

human/Bethesda/DC2106/

1976/G3P[8]

Rotavirus A
NC_011502
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 8
FJ947844

human/Bethesda/DC2106/

1976/G3P[8]

Rotavirus A
NC_011504
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg.
FJ947846

human/Bethesda/DC2106/

10

1976/G3P[8]

Rotavirus A
NC_011505
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg.
FJ947847

human/Bethesda/DC2106/

11

1976/G3P[8]

Rotavirus A
NC_011506
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 2
FJ947838

human/Bethesda/DC2106/

1976/G3P[8]

Rotavirus A
NC_011507
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 1
FJ947837

human/Bethesda/DC2106/

1976/G3P[8]

Rotavirus A
NC_011508
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 3
FJ947839

human/Bethesda/DC2106/

1976/G3P[8]

Rotavirus A
NC_011509
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 6
FJ947842

human/Bethesda/DC2106/

1976/G3P[8]

Rotavirus A
NC_011510
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 4
FJ947840

human/Bethesda/DC2106/

1976/G3P[8]

Rotavirus A
NC_011500
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 5
FJ947377

human/Bethesda/DC2109/

1976/G3P[8]

Rotavirus A
NC_011501
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 7
FJ947379

human/Bethesda/DC2109/

1976/G3P[8]

Rotavirus A
NC_011502
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 8
FJ947380

human/Bethesda/DC2109/

1976/G3P[8]

Rotavirus A
NC_011504
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg.
FJ947382

human/Bethesda/DC2109/

10

1976/G3P[8]

Rotavirus A
NC_011505
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg.
FJ947383

human/Bethesda/DC2109/

11

1976/G3P[8]

Rotavirus A
NC_011506
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 2
FJ947374

human/Bethesda/DC2109/

1976/G3P[8]

Rotavirus A
NC_011509
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 6
FJ947378

human/Bethesda/DC2109/

1976/G3P[8]

Rotavirus A
NC_011510
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 4
FJ947376

human/Bethesda/DC2109/

1976/G3P[8]

Rotavirus A
NC_011500
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 5
FJ947388

human/Bethesda/DC2114/

1976/G3P[8]

Rotavirus A
NC_011501
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 7
FJ947390

human/Bethesda/DC2114/

1976/G3P[8]

Rotavirus A
NC_011502
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 8
FJ947391

human/Bethesda/DC2114/

1976/G3P[8]

Rotavirus A
NC_011504
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg.
FJ947393

human/Bethesda/DC2114/

10

1976/G3P[8]

Rotavirus A
NC_011505
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg.
FJ947394

human/Bethesda/DC2114/

11

1976/G3P[8]

Rotavirus A
NC_011506
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 2
FJ947385

human/Bethesda/DC2114/

1976/G3P[8]

Rotavirus A
NC_011508
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 3
FJ947386

human/Bethesda/DC2114/

1976/G3P[8]

Rotavirus A
NC_011509
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 6
FJ947389

human/Bethesda/DC2114/

1976/G3P[8]

Rotavirus A
NC_011510
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 4
FJ947387

human/Bethesda/DC2114/

1976/G3P[8]

Rotavirus A
NC_011500
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 5
FJ947399

human/Bethesda/DC2119/

1976/G3P[8]

Rotavirus A
NC_011501
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 7
FJ947401

human/Bethesda/DC2119/

1976/G3P[8]

Rotavirus A
NC_011502
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 8
FJ947402

human/Bethesda/DC2119/

1976/G3P[8]

Rotavirus A
NC_011504
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg.
FJ947404

human/Bethesda/DC2119/

10

1976/G3P[8]

Rotavirus A
NC_011505
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg.
FJ947405

human/Bethesda/DC2119/

11

1976/G3P[8]

Rotavirus A
NC_011508
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 3
FJ947397

human/Bethesda/DC2119/

1976/G3P[8]

Rotavirus A
NC_011509
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 6
FJ947400

human/Bethesda/DC2119/

1976/G3P[8]

Rotavirus A
NC_011510
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 4
FJ947398

human/Bethesda/DC2119/

1976/G3P[8]

Rotavirus A
NC_011500
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 5
FJ947410

human/Bethesda/DC2171/

1976/G3P[8]

Rotavirus A
NC_011501
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 7
FJ947412

human/Bethesda/DC2171/

1976/G3P[8]

Rotavirus A
NC_011502
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 8
FJ947413

human/Bethesda/DC2171/

1976/G3P[8]

Rotavirus A
NC_011504
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg.
FJ947415

human/Bethesda/DC2171/

10

1976/G3P[8]

Rotavirus A
NC_011505
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg.
FJ947416

human/Bethesda/DC2171/

11

1976/G3P[8]

Rotavirus A
NC_011508
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 3
FJ947408

human/Bethesda/DC2171/

1976/G3P[8]

Rotavirus A
NC_011509
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 6
FJ947411

human/Bethesda/DC2171/

1976/G3P[8]

Rotavirus A
NC_011510
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 4
FJ947409

human/Bethesda/DC2171/

1976/G3P[8]

Rotavirus A
NC_011500
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 5
FJ947852

human/Bethesda/DC2212/

1976/G3P[8]

Rotavirus A
NC_011501
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 7
FJ947854

human/Bethesda/DC2212/

1976/G3P[8]

Rotavirus A
NC_011502
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 8
FJ947855

human/Bethesda/DC2212/

1976/G3P[8]

Rotavirus A
NC_011504
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg.
FJ947857

human/Bethesda/DC2212/

10

1976/G3P[8]

Rotavirus A
NC_011505
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg.
FJ947858

human/Bethesda/DC2212/

11

1976/G3P[8]

Rotavirus A
NC_011506
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 2
FJ947849

human/Bethesda/DC2212/

1976/G3P[8]

Rotavirus A
NC_011508
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 3
FJ947850

human/Bethesda/DC2212/

1976/G3P[8]

Rotavirus A
NC_011509
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 6
FJ947853

human/Bethesda/DC2212/

1976/G3P[8]

Rotavirus A
NC_011510
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 4
FJ947851

human/Bethesda/DC2212/

1976/G3P[8]

Rotavirus A
NC_011500
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 5
FJ947421

human/Bethesda/DC2238/

1976/G3P[8]

Rotavirus A
NC_011501
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 7
FJ947423

human/Bethesda/DC2238/

1976/G3P[8]

Rotavirus A
NC_011502
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 8
FJ947424

human/Bethesda/DC2238/

1976/G3P[8]

Rotavirus A
NC_011504
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg.
FJ947426

human/Bethesda/DC2238/

10

1976/G3P[8]

Rotavirus A
NC_011505
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg.
FJ947427

human/Bethesda/DC2238/

11

1976/G3P[8]

Rotavirus A
NC_011508
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 3
FJ947419

human/Bethesda/DC2238/

1976/G3P[8]

Rotavirus A
NC_011509
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 6
FJ947422

human/Bethesda/DC2238/

1976/G3P[8]

Rotavirus A
NC_011510
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 4
FJ947420

human/Bethesda/DC2238/

1976/G3P[8]

Rotavirus A
NC_011500
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 5
FJ947863

human/Bethesda/DC2239/

1976/G3P[8]

Rotavirus A
NC_011501
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 7
FJ947865

human/Bethesda/DC2239/

1976/G3P[8]

Rotavirus A
NC_011502
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 8
FJ947866

human/Bethesda/DC2239/

1976/G3P[8]

Rotavirus A
NC_011504
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg.
FJ947868

human/Bethesda/DC2239/

10

1976/G3P[8]

Rotavirus A
NC_011505
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg.
FJ947869

human/Bethesda/DC2239/

11

1976/G3P[8]

Rotavirus A
NC_011506
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 2
FJ947860

human/Bethesda/DC2239/

1976/G3P[8]

Rotavirus A
NC_011508
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 3
FJ947861

human/Bethesda/DC2239/

1976/G3P[8]

Rotavirus A
NC_011509
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 6
FJ947864

human/Bethesda/DC2239/

1976/G3P[8]

Rotavirus A
NC_011510
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 4
FJ947862

human/Bethesda/DC2239/

1976/G3P[8]

Rotavirus A
NC_011500
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 5
HM773880

human/Bethesda/DC2241/

1977/G4P[8]

Rotavirus A
NC_011501
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 7
HM773882

human/Bethesda/DC2241/

1977/G4P[8]

Rotavirus A
NC_011502
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 8
HM773883

human/Bethesda/DC2241/

1977/G4P[8]

Rotavirus A
NC_011503
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 9
HM773884

human/Bethesda/DC2241/

1977/G4P[8]

Rotavirus A
NC_011504
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg.
HM773885

human/Bethesda/DC2241/

10

1977/G4P[8]

Rotavirus A
NC_011505
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg.
HM773886

human/Bethesda/DC2241/

11

1977/G4P[8]

Rotavirus A
NC_011506
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 2
HM773877

human/Bethesda/DC2241/

1977/G4P[8]

Rotavirus A
NC_011507
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 1
HM773876

human/Bethesda/DC2241/

1977/G4P[8]

Rotavirus A
NC_011508
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 3
HM773878

human/Bethesda/DC2241/

1977/G4P[8]

Rotavirus A
NC_011509
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 6
HM773881

human/Bethesda/DC2241/

1977/G4P[8]

Rotavirus A
NC_011510
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 4
HM773879

human/Bethesda/DC2241/

1977/G4P[8]

Rotavirus A
NC_011500
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 5
FJ947874

human/Bethesda/DC2262/

1976/G3P[8]

Rotavirus A
NC_011501
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 7
FJ947876

human/Bethesda/DC2262/

1976/G3P[8]

Rotavirus A
NC_011502
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 8
FJ947877

human/Bethesda/DC2262/

1976/G3P[8]

Rotavirus A
NC_011504
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg.
FJ947879

human/Bethesda/DC2262/

10

1976/G3P[8]

Rotavirus A
NC_011505
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg.
FJ947880

human/Bethesda/DC2262/

11

1976/G3P[8]

Rotavirus A
NC_011506
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 2
FJ947871

human/Bethesda/DC2262/

1976/G3P[8]

Rotavirus A
NC_011508
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 3
FJ947872

human/Bethesda/DC2262/

1976/G3P[8]

Rotavirus A
NC_011509
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 6
FJ947875

human/Bethesda/DC2262/

1976/G3P[8]

Rotavirus A
NC_011510
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 4
FJ947873

human/Bethesda/DC2262/

1976/G3P[8]

Rotavirus A
NC_011500
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 5
FJ947885

human/Bethesda/DC2266/

1976/G3P[8]

Rotavirus A
NC_011501
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 7
FJ947887

human/Bethesda/DC2266/

1976/G3P[8]

Rotavirus A
NC_011502
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 8
FJ947888

human/Bethesda/DC2266/

1976/G3P[8]

Rotavirus A
NC_011504
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg.
FJ947890

human/Bethesda/DC2266/

10

1976/G3P[8]

Rotavirus A
NC_011505
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg.
FJ947891

human/Bethesda/DC2266/

11

1976/G3P[8]

Rotavirus A
NC_011508
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 3
FJ947883

human/Bethesda/DC2266/

1976/G3P[8]

Rotavirus A
NC_011509
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 6
FJ947886

human/Bethesda/DC2266/

1976/G3P[8]

Rotavirus A
NC_011510
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 4
FJ947884

human/Bethesda/DC2266/

1976/G3P[8]

Rotavirus A
NC_011500
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 5
FJ947212

human/Bethesda/DC23/19

76/G3P[8]

Rotavirus A
NC_011501
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 7
FJ947214

human/Bethesda/DC23/19

76/G3P[8]

Rotavirus A
NC_011502
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 8
FJ947215

human/Bethesda/DC23/19

76/G3P[8]

Rotavirus A
NC_011503
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 9
FJ947216

human/Bethesda/DC23/19

76/G3P[8]

Rotavirus A
NC_011504
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg.
FJ947217

human/Bethesda/DC23/19

10

76/G3P[8]

Rotavirus A
NC_011505
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg.
FJ947218

human/Bethesda/DC23/19

11

76/G3P[8]

Rotavirus A
NC_011507
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 1
FJ947208

human/Bethesda/DC23/19

76/G3P[8]

Rotavirus A
NC_011509
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 6
FJ947213

human/Bethesda/DC23/19

76/G3P[8]

Rotavirus A
NC_011510
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 4
FJ947211

human/Bethesda/DC23/19

76/G3P[8]

Rotavirus A
NC_011500
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 5
HM773891

human/Bethesda/DC4320/

1988/G4P[8]

Rotavirus A
NC_011501
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 7
HM773893

human/Bethesda/DC4320/

1988/G4P[8]

Rotavirus A
NC_011502
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 8
HM773894

human/Bethesda/DC4320/

1988/G4P[8]

Rotavirus A
NC_011503
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 9
HM773895

human/Bethesda/DC4320/

1988/G4P[8]

Rotavirus A
NC_011504
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg.
HM773896

human/Bethesda/DC4320/

10

1988/G4P[8]

Rotavirus A
NC_011505
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg.
HM773897

human/Bethesda/DC4320/

11

1988/G4P[8]

Rotavirus A
NC_011506
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 2
HM773888

human/Bethesda/DC4320/

1988/G4P[8]

Rotavirus A
NC_011507
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 1
HM773887

human/Bethesda/DC4320/

1988/G4P[8]

Rotavirus A
NC_011508
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 3
HM773889

human/Bethesda/DC4320/

1988/G4P[8]

Rotavirus A
NC_011509
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 6
HM773892

human/Bethesda/DC4320/

1988/G4P[8]

Rotavirus A
NC_011510
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 4
HM773890

human/Bethesda/DC4320/

1988/G4P[8]

Rotavirus A
NC_011500
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 5
HM773902

human/Bethesda/DC4608/

1980/G4P[8]

Rotavirus A
NC_011501
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 7
HM773904

human/Bethesda/DC4608/

1980/G4P[8]

Rotavirus A
NC_011502
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 8
HM773905

human/Bethesda/DC4608/

1980/G4P[8]

Rotavirus A
NC_011503
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 9
HM773906

human/Bethesda/DC4608/

1980/G4P[8]

Rotavirus A
NC_011504
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg.
HM773907

human/Bethesda/DC4608/

10

1980/G4P[8]

Rotavirus A
NC_011505
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg.
HM773908

human/Bethesda/DC4608/

11

1980/G4P[8]

Rotavirus A
NC_011506
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 2
HM773899

human/Bethesda/DC4608/

1980/G4P[8]

Rotavirus A
NC_011507
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 1
HM773898

human/Bethesda/DC4608/

1980/G4P[8]

Rotavirus A
NC_011508
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 3
HM773900

human/Bethesda/DC4608/

1980/G4P[8]

Rotavirus A
NC_011509
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 6
HM773903

human/Bethesda/DC4608/

1980/G4P[8]

Rotavirus A
NC_011510
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 4
HM773901

human/Bethesda/DC4608/

1980/G4P[8]

Rotavirus A
NC_011500
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 5
HM773913

human/Bethesda/DC4613/

1980/G4P[8]

Rotavirus A
NC_011501
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 7
HM773915

human/Bethesda/DC4613/

1980/G4P[8]

Rotavirus A
NC_011502
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 8
HM773916

human/Bethesda/DC4613/

1980/G4P[8]

Rotavirus A
NC_011503
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 9
HM773917

human/Bethesda/DC4613/

1980/G4P[8]

Rotavirus A
NC_011504
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg.
HM773918

human/Bethesda/DC4613/

10

1980/G4P[8]

Rotavirus A
NC_011505
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg.
HM773919

human/Bethesda/DC4613/

11

1980/G4P[8]

Rotavirus A
NC_011506
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 2
HM773910

human/Bethesda/DC4613/

1980/G4P[8]

Rotavirus A
NC_011507
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 1
HM773909

human/Bethesda/DC4613/

1980/G4P[8]

Rotavirus A
NC_011508
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 3
HM773911

human/Bethesda/DC4613/

1980/G4P[8]

Rotavirus A
NC_011509
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 6
HM773914

human/Bethesda/DC4613/

1980/G4P[8]

Rotavirus A
NC_011510
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 4
HM773912

human/Bethesda/DC4613/

1980/G4P[8]

Rotavirus A
NC_011500
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 5
FJ947366

human/Bethesda/DC4772/

1976/G3P[8]

Rotavirus A
NC_011501
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 7
FJ947368

human/Bethesda/DC4772/

1976/G3P[8]

Rotavirus A
NC_011502
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 8
FJ947369

human/Bethesda/DC4772/

1976/G3P[8]

Rotavirus A
NC_011504
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg.
FJ947371

human/Bethesda/DC4772/

10

1976/G3P[8]

Rotavirus A
NC_011505
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg.
FJ947372

human/Bethesda/DC4772/

11

1976/G3P[8]

Rotavirus A
NC_011506
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 2
FJ947363

human/Bethesda/DC4772/

1976/G3P[8]

Rotavirus A
NC_011507
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 1
FJ947362

human/Bethesda/DC4772/

1976/G3P[8]

Rotavirus A
NC_011508
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 3
FJ947364

human/Bethesda/DC4772/

1976/G3P[8]

Rotavirus A
NC_011509
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 6
FJ947367

human/Bethesda/DC4772/

1976/G3P[8]

Rotavirus A
NC_011510
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 4
FJ947365

human/Bethesda/DC4772/

1976/G3P[8]

Rotavirus A
NC_011500
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 5
HM773924

human/Bethesda/DC4996/

1977/G4P[8]

Rotavirus A
NC_011501
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 7
HM773926

human/Bethesda/DC4996/

1977/G4P[8]

Rotavirus A
NC_011502
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 8
HM773927

human/Bethesda/DC4996/

1977/G4P[8]

Rotavirus A
NC_011503
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 9
HM773928

human/Bethesda/DC4996/

1977/G4P[8]

Rotavirus A
NC_011504
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg.
HM773929

human/Bethesda/DC4996/

10

1977/G4P[8]

Rotavirus A
NC_011505
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg.
HM773930

human/Bethesda/DC4996/

11

1977/G4P[8]

Rotavirus A
NC_011506
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 2
HM773921

human/Bethesda/DC4996/

1977/G4P[8]

Rotavirus A
NC_011507
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 1
HM773920

human/Bethesda/DC4996/

1977/G4P[8]

Rotavirus A
NC_011508
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 3
HM773922

human/Bethesda/DC4996/

1977/G4P[8]

Rotavirus A
NC_011509
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 6
HM773925

human/Bethesda/DC4996/

1977/G4P[8]

Rotavirus A
NC_011510
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 4
HM773923

human/Bethesda/DC4996/

1977/G4P[8]

Rotavirus A
NC_011500
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 5
HM773935

human/Bethesda/DC5064/

1977/G4P[8]

Rotavirus A
NC_011501
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 7
HM773937

human/Bethesda/DC5064/

1977/G4P[8]

Rotavirus A
NC_011502
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 8
HM773938

human/Bethesda/DC5064/

1977/G4P[8]

Rotavirus A
NC_011503
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 9
HM773939

human/Bethesda/DC5064/

1977/G4P[8]

Rotavirus A
NC_011504
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg.
HM773940

human/Bethesda/DC5064/

10

1977/G4P[8]

Rotavirus A
NC_011505
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg.
HM773941

human/Bethesda/DC5064/

11

1977/G4P[8]

Rotavirus A
NC_011506
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 2
HM773932

human/Bethesda/DC5064/

1977/G4P[8]

Rotavirus A
NC_011507
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 1
HM773931

human/Bethesda/DC5064/

1977/G4P[8]

Rotavirus A
NC_011508
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 3
HM773933

human/Bethesda/DC5064/

1977/G4P[8]

Rotavirus A
NC_011509
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 6
HM773936

human/Bethesda/DC5064/

1977/G4P[8]

Rotavirus A
NC_011510
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 4
HM773934

human/Bethesda/DC5064/

1977/G4P[8]

Rotavirus A
NC_011500
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 5
HM773946

human/Bethesda/DC5115/

1977/G4P[8]

Rotavirus A
NC_011501
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 7
HM773948

human/Bethesda/DC5115/

1977/G4P[8]

Rotavirus A
NC_011502
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 8
HM773949

human/Bethesda/DC5115/

1977/G4P[8]

Rotavirus A
NC_011503
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 9
HM773950

human/Bethesda/DC5115/

1977/G4P[8]

Rotavirus A
NC_011504
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg.
HM773951

human/Bethesda/DC5115/

10

1977/G4P[8]

Rotavirus A
NC_011505
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg.
HM773952

human/Bethesda/DC5115/

11

1977/G4P[8]

Rotavirus A
NC_011506
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 2
HM773943

human/Bethesda/DC5115/

1977/G4P[8]

Rotavirus A
NC_011507
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 1
HM773942

human/Bethesda/DC5115/

1977/G4P[8]

Rotavirus A
NC_011508
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 3
HM773944

human/Bethesda/DC5115/

1977/G4P[8]

Rotavirus A
NC_011509
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 6
HM773947

human/Bethesda/DC5115/

1977/G4P[8]

Rotavirus A
NC_011510
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 4
HM773945

human/Bethesda/DC5115/

1977/G4P[8]

Rotavirus A
NC_011500
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 5
FJ947201

human/Bethesda/DC5142/

1975/G3P[8]

Rotavirus A
NC_011501
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 7
FJ947203

human/Bethesda/DC5142/

1975/G3P[8]

Rotavirus A
NC_011502
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 8
FJ947204

human/Bethesda/DC5142/

1975/G3P[8]

Rotavirus A
NC_011503
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 9
FJ947205

human/Bethesda/DC5142/

1975/G3P[8]

Rotavirus A
NC_011504
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg.
FJ947206

human/Bethesda/DC5142/

10

1975/G3P[8]

Rotavirus A
NC_011505
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg.
FJ947207

human/Bethesda/DC5142/

11

1975/G3P[8]

Rotavirus A
NC_011507
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 1
FJ947197

human/Bethesda/DC5142/

1975/G3P[8]

Rotavirus A
NC_011508
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 3
FJ947199

human/Bethesda/DC5142/

1975/G3P[8]

Rotavirus A
NC_011509
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 6
FJ947202

human/Bethesda/DC5142/

1975/G3P[8]

Rotavirus A
NC_011510
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 4
FJ947200

human/Bethesda/DC5142/

1975/G3P[8]

Rotavirus A
NC_011500
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 5
FJ947498

human/Bethesda/DC5491/

1991/G3P[8]

Rotavirus A
NC_011501
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 7
FJ947500

human/Bethesda/DC5491/

1991/G3P[8]

Rotavirus A
NC_011502
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 8
FJ947501

human/Bethesda/DC5491/

1991/G3P[8]

Rotavirus A
NC_011504
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg.
FJ947503

human/Bethesda/DC5491/

10

1991/G3P[8]

Rotavirus A
NC_011505
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg.
FJ947504

human/Bethesda/DC5491/

11

1991/G3P[8]

Rotavirus A
NC_011506
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 2
FJ947495

human/Bethesda/DC5491/

1991/G3P[8]

Rotavirus A
NC_011508
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 3
FJ947496

human/Bethesda/DC5491/

1991/G3P[8]

Rotavirus A
NC_011509
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 6
FJ947499

human/Bethesda/DC5491/

1991/G3P[8]

Rotavirus A
NC_011510
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 4
FJ947497

human/Bethesda/DC5491/

1991/G3P[8]

Rotavirus A
NC_011500
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 5
FJ947509

human/Bethesda/DC5544/

1991/G3P[8]

Rotavirus A
NC_011501
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 7
FJ947511

human/Bethesda/DC5544/

1991/G3P[8]

Rotavirus A
NC_011502
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 8
FJ947512

human/Bethesda/DC5544/

1991/G3P[8]

Rotavirus A
NC_011504
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg.
FJ947514

human/Bethesda/DC5544/

10

1991/G3P[8]

Rotavirus A
NC_011505
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg.
FJ947515

human/Bethesda/DC5544/

11

1991/G3P[8]

Rotavirus A
NC_011506
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 2
FJ947506

human/Bethesda/DC5544/

1991/G3P[8]

Rotavirus A
NC_011507
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 1
FJ947505

human/Bethesda/DC5544/

1991/G3P[8]

Rotavirus A
NC_011508
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 3
FJ947507

human/Bethesda/DC5544/

1991/G3P[8]

Rotavirus A
NC_011509
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 6
FJ947510

human/Bethesda/DC5544/

1991/G3P[8]

Rotavirus A
NC_011510
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 4
FJ947508

human/Bethesda/DC5544/

1991/G3P[8]

Rotavirus A
NC_011500
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 5
FJ947520

human/Bethesda/DC5549/

1991/G3P[8]

Rotavirus A
NC_011501
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 7
FJ947522

human/Bethesda/DC5549/

1991/G3P[8]

Rotavirus A
NC_011502
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 8
FJ947523

human/Bethesda/DC5549/

1991/G3P[8]

Rotavirus A
NC_011504
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg.
FJ947525

human/Bethesda/DC5549/

10

1991/G3P[8]

Rotavirus A
NC_011505
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg.
FJ947526

human/Bethesda/DC5549/

11

1991/G3P[8]

Rotavirus A
NC_011506
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 2
FJ947517

human/Bethesda/DC5549/

1991/G3P[8]

Rotavirus A
NC_011507
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 1
FJ947516

human/Bethesda/DC5549/

1991/G3P[8]

Rotavirus A
NC_011508
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 3
FJ947518

human/Bethesda/DC5549/

1991/G3P[8]

Rotavirus A
NC_011509
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 6
FJ947521

human/Bethesda/DC5549/

1991/G3P[8]

Rotavirus A
NC_011510
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 4
FJ947519

human/Bethesda/DC5549/

1991/G3P[8]

Rotavirus A
NC_011500
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 5
FJ947940

human/Bethesda/DC5553/

1991/G3P[8]

Rotavirus A
NC_011501
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 7
FJ947942

human/Bethesda/DC5553/

1991/G3P[8]

Rotavirus A
NC_011502
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 8
FJ947943

human/Bethesda/DC5553/

1991/G3P[8]

Rotavirus A
NC_011504
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg.
FJ947945

human/Bethesda/DC5553/

10

1991/G3P[8]

Rotavirus A
NC_011505
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg.
FJ947946

human/Bethesda/DC5553/

11

1991/G3P[8]

Rotavirus A
NC_011506
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 2
FJ947937

human/Bethesda/DC5553/

1991/G3P[8]

Rotavirus A
NC_011507
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 1
FJ947936

human/Bethesda/DC5553/

1991/G3P[8]

Rotavirus A
NC_011508
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 3
FJ947938

human/Bethesda/DC5553/

1991/G3P[8]

Rotavirus A
NC_011509
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 6
FJ947941

human/Bethesda/DC5553/

1991/G3P[8]

Rotavirus A
NC_011510
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 4
FJ947939

human/Bethesda/DC5553/

1991/G3P[8]

Rotavirus A
NC_011500
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 5
FJ947786

human/Bethesda/DC5710/

1991/G3P[8]

Rotavirus A
NC_011501
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 7
FJ947788

human/Bethesda/DC5710/

1991/G3P[8]

Rotavirus A
NC_011502
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 8
FJ947789

human/Bethesda/DC5710/

1991/G3P[8]

Rotavirus A
NC_011504
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg.
FJ947791

human/Bethesda/DC5710/

10

1991/G3P[8]

Rotavirus A
NC_011505
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg.
FJ947792

human/Bethesda/DC5710/

11

1991/G3P[8]

Rotavirus A
NC_011506
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 2
FJ947783

human/Bethesda/DC5710/

1991/G3P[8]

Rotavirus A
NC_011507
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 1
FJ947782

human/Bethesda/DC5710/

1991/G3P[8]

Rotavirus A
NC_011508
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 3
FJ947784

human/Bethesda/DC5710/

1991/G3P[8]

Rotavirus A
NC_011509
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 6
FJ947787

human/Bethesda/DC5710/

1991/G3P[8]

Rotavirus A
NC_011510
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 4
FJ947785

human/Bethesda/DC5710/

1991/G3P[8]

Rotavirus A
NC_011500
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 5
FJ947333

human/Bethesda/DC5728/

1991/G3P[8]

Rotavirus A
NC_011501
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 7
FJ947335

human/Bethesda/DC5728/

1991/G3P[8]

Rotavirus A
NC_011502
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 8
FJ947336

human/Bethesda/DC5728/

1991/G3P[8]

Rotavirus A
NC_011504
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg.
FJ947338

human/Bethesda/DC5728/

10

1991/G3P[8]

Rotavirus A
NC_011505
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg.
FJ947339

human/Bethesda/DC5728/

11

1991/G3P[8]

Rotavirus A
NC_011506
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 2
FJ947330

human/Bethesda/DC5728/

1991/G3P[8]

Rotavirus A
NC_011507
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 1
FJ947329

human/Bethesda/DC5728/

1991/G3P[8]

Rotavirus A
NC_011509
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 6
FJ947334

human/Bethesda/DC5728/

1991/G3P[8]

Rotavirus A
NC_011510
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 4
FJ947332

human/Bethesda/DC5728/

1991/G3P[8]

Rotavirus A
NC_011500
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 5
FJ947797

human/Bethesda/DC5751/

1991/G3P[8]

Rotavirus A
NC_011501
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 7
FJ947799

human/Bethesda/DC5751/

1991/G3P[8]

Rotavirus A
NC_011502
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 8
FJ947800

human/Bethesda/DC5751/

1991/G3P[8]

Rotavirus A
NC_011503
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 9
FJ947801

human/Bethesda/DC5751/

1991/G3P[8]

Rotavirus A
NC_011504
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg.
FJ947802

human/Bethesda/DC5751/

10

1991/G3P[8]

Rotavirus A
NC_011505
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg.
FJ947803

human/Bethesda/DC5751/

11

1991/G3P[8]

Rotavirus A
NC_011507
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 1
FJ947793

human/Bethesda/DC5751/

1991/G3P[8]

Rotavirus A
NC_011508
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 3
FJ947795

human/Bethesda/DC5751/

1991/G3P[8]

Rotavirus A
NC_011509
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 6
FJ947798

human/Bethesda/DC5751/

1991/G3P[8]

Rotavirus A
NC_011510
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 4
FJ947796

human/Bethesda/DC5751/

1991/G3P[8]

Rotavirus A
NC_011500
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 5
FJ947764

human/Bethesda/DC792/1

980/G3P[8]

Rotavirus A
NC_011501
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 7
FJ947766

human/Bethesda/DC792/1

980/G3P[8]

Rotavirus A
NC_011502
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 8
FJ947767

human/Bethesda/DC792/1

980/G3P[8]

Rotavirus A
NC_011504
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg.
FJ947769

human/Bethesda/DC792/1

10

980/G3P[8]

Rotavirus A
NC_011505
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg.
FJ947770

human/Bethesda/DC792/1

11

980/G3P[8]

Rotavirus A
NC_011506
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 2
FJ947761

human/Bethesda/DC792/1

980/G3P[8]

Rotavirus A
NC_011507
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 1
FJ947760

human/Bethesda/DC792/1

980/G3P[8]

Rotavirus A
NC_011508
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 3
FJ947762

human/Bethesda/DC792/1

980/G3P[8]

Rotavirus A
NC_011509
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 6
FJ947765

human/Bethesda/DC792/1

980/G3P[8]

Rotavirus A
NC_011510
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 4
FJ947763

human/Bethesda/DC792/1

980/G3P[8]

Rotavirus A
NC_011500
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 5
HM773957

human/Bethesda/DC827/1

978/G4P[8]

Rotavirus A
NC_011501
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 7
HM773959

human/Bethesda/DC827/1

978/G4P[8]

Rotavirus A
NC_011502
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 8
HM773960

human/Bethesda/DC827/1

978/G4P[8]

Rotavirus A
NC_011503
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 9
HM773961

human/Bethesda/DC827/1

978/G4P[8]

Rotavirus A
NC_011504
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg.
HM773962

human/Bethesda/DC827/1

10

978/G4P[8]

Rotavirus A
NC_011505
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg.
HM773963

human/Bethesda/DC827/1

11

978/G4P[8]

Rotavirus A
NC_011506
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 2
HM773954

human/Bethesda/DC827/1

978/G4P[8]

Rotavirus A
NC_011507
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 1
HM773953

human/Bethesda/DC827/1

978/G4P[8]

Rotavirus A
NC_011508
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 3
HM773955

human/Bethesda/DC827/1

978/G4P[8]

Rotavirus A
NC_011509
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 6
HM773958

human/Bethesda/DC827/1

978/G4P[8]

Rotavirus A
NC_011510
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 4
HM773956

human/Bethesda/DC827/1

978/G4P[8]

Rotavirus A
NC_011500
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 5
HM773770

human/USA/2007719698/2

007/G1P[8]

Rotavirus A
NC_011501
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 7
HM773772

human/USA/2007719698/2

0071G1P[8]

Rotavirus A
NC_011502
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 8
HM773773

human/USA/2007719698/2

007/G1P[8]

Rotavirus A
NC_011503
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 9
HM773774

human/USA/2007719698/2

007/G1P[8]

Rotavirus A
NC_011504
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg.
HM773775

human/USA/2007719698/2

10

007/G1P[8]

Rotavirus A
NC_011505
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg.
HM773776

human/USA/2007719698/2

11

007/G1P[8]

Rotavirus A
NC_011506
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 2
HM773767

human/USA/2007719698/2

007/G1P[8]

Rotavirus A
NC_011507
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 1
HM773766

human/USA/2007719698/2

007/G1P[8]

Rotavirus A
NC_011508
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 3
HM773768

human/USA/2007719698/2

007/G1P[8]

Rotavirus A
NC_011509
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 6
HM773771

human/USA/2007719698/2

007/G1P[8]

Rotavirus A
NC_011510
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 4
HM773769

human/USA/2007719698/2

007/G1P[8]

Rotavirus A
NC_011500
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 5
HM773759

human/USA/2007719739/2

007/G1P[8]

Rotavirus A
NC_011501
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 7
HM773761

human/USA/2007719739/2

007/G1P[8]

Rotavirus A
NC_011502
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 8
HM773762

human/USA/2007719739/2

007/G1P[8]

Rotavirus A
NC_011503
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 9
HM773763

human/USA/2007719739/2

007/G1P[8]

Rotavirus A
NC_011504
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg.
HM773764

human/USA/2007719739/2

10

007/G1P[8]

Rotavirus A
NC_011505
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg.
HM773765

human/USA/2007719739/2

11

007/G1P[8]

Rotavirus A
NC_011506
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 2
HM773756

human/USA/2007719739/2

007/G1P[8]

Rotavirus A
NC_011507
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 1
HM773755

human/USA/2007719739/2

007/G1P[8]

Rotavirus A
NC_011508
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 3
HM773757

human/USA/2007719739/2

007/G1P[8]

Rotavirus A
NC_011509
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 6
HM773760

human/USA/2007719739/2

007/G1P[8]

Rotavirus A
NC_011510
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 4
HM773758

human/USA/2007719739/2

007/G1P[8]

Rotavirus A
NC_011500
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 5
HM773748

human/USA/2007719825/2

007/G1P[8]

Rotavirus A
NC_011501
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 7
HM773750

human/USA/2007719825/2

007/G1P[8]

Rotavirus A
NC_011502
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 8
HM773751

human/USA/2007719825/2

007/G1P[8]

Rotavirus A
NC_011503
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 9
HM773752

human/USA/2007719825/2

007/G1P[8]

Rotavirus A
NC_011504
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg.
HM773753

human/USA/2007719825/2

10

007/G1P[8]

Rotavirus A
NC_011505
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg.
HM773754

human/USA/2007719825/2

11

007/G1P[8]

Rotavirus A
NC_011506
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 2
HM773745

human/USA/2007719825/2

007/G1P[8]

Rotavirus A
NC_011507
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 1
HM773744

human/USA/2007719825/2

007/G1P[8]

Rotavirus A
NC_011508
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 3
HM773746

human/USA/2007719825/2

007/G1P[8]

Rotavirus A
NC_011508
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 3
JF490334

human/Victoria/CK00026/2

005/G1P[8]

Rotavirus A
NC_011509
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 6
JF490332

human/Victoria/CK00026/2

005/G1P[8]

Rotavirus A
NC_011510
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 4
JF490333

human/Victoria/CK00026/2

005/G1P[8]

Rotavirus A
NC_011500
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 5
JF490338

human/Victoria/CK00027/2

054/G1P[8]

Rotavirus A
NC_011501
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 7
JF490342

human/Victoria/CK00027/2

054/G1P[8]

Rotavirus A
NC_011502
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 8
JF490337

human/Victoria/CK00027/2

054/G1P[8]

Rotavirus A
NC_011503
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 9
JF490341

human/Victoria/CK00027/2

054/G1P[8]

Rotavirus A
NC_011504
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg.
JF490340

human/Victoria/CK00027/2

10

054/G1P[8]

Rotavirus A
NC_011505
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg.
JF490339

human/Victoria/CK00027/2

11

054/G1P[8]

Rotavirus A
NC_011506
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 2
JF490345

human/Victoria/CK00027/2

054/G1P[8]

Rotavirus A
NC_011507
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 1
JF490336

human/Victoria/CK00027/2

054/G1P[8]

Rotavirus A
NC_011508
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 3
JF490346

human/Victoria/CK00027/2

054/G1P[8]

Rotavirus A
NC_011509
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 6
JF490343

human/Victoria/CK00027/2

054/G1P[8]

Rotavirus A
NC_011510
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 4
JF490344

human/Victoria/CK00027/2

054/G1P[8]

Rotavirus A
NC_011500
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 5
JF490357

human/Victoria/CK00028/2

005/G1P[8]

Rotavirus A
NC_011501
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 7
JF490352

human/Victoria/CK00028/2

005/G1P[8]

Rotavirus A
NC_011502
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 8
JF490348

human/Victoria/CK00028/2

005/G1P[8]

Rotavirus A
NC_011503
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 9
JF490351

human/Victoria/CK00028/2

005/G1P[8]

Rotavirus A
NC_011504
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg.
JF490350

human/Victoria/CK00028/2

10

005/G1P[8]

Rotavirus A
NC_011505
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg.
JF490349

human/Victoria/CK00028/2

11

005/G1P[8]

Rotavirus A
NC_011506
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 2
JF490356

human/Victoria/CK00028/2

005/G1P[8]

Rotavirus A
NC_011507
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 1
JF490347

human/Victoria/CK00028/2

005/G1P[8]

Rotavirus A
NC_011508
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 3
JF490355

human/Victoria/CK00028/2

005/G1P[8]

Rotavirus A
NC_011509
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 6
JF490353

human/Victoria/CK00028/2

005/G1P[8]

Rotavirus A
NC_011510
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 4
JF490354

human/Victoria/CK00028/2

005/G1P[8]

Rotavirus A
NC_011500
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 5
JF490360

human/Victoria/CK00029/2

006/G1P[8]

Rotavirus A
NC_011501
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 7
JF490363

human/Victoria/CK00029/2

006/G1P[8]

Rotavirus A
NC_011502
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 8
JF490359

human/Victoria/CK00029/2

006/G1P[8]

Rotavirus A
NC_011503
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 9
JF490368

human/Victoria/CK00029/2

006/G1P[8]

Rotavirus A
NC_011504
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg.
JF490362

human/Victoria/CK00029/2

10

006/G1P[8]

Rotavirus A
NC_011505
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg.
JF490361

human/Victoria/CK00029/2

11

006/G1P[8]

Rotavirus A
NC_011506
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 2
JF490367

human/Victoria/CK00029/2

006/G1P[8]

Rotavirus A
NC_011507
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 1
JF490358

human/Victoria/CK00029/2

006/G1P[8]

Rotavirus A
NC_011508
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 3
JF490366

human/Victoria/CK00029/2

006/G1P[8]

Rotavirus A
NC_011509
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 6
JF490364

human/Victoria/CK00029/2

006/G1P[8]

Rotavirus A
NC_011510
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 4
JF490365

human/Victoria/CK00029/2

006/G1P[8]

Rotavirus A
NC_011500
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 5
JF490371

human/Victoria/CK00030/2

006/G1P[8]

Rotavirus A
NC_011501
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 7
JF490375

human/Victoria/CK00030/2

006/G1P[8]

Rotavirus A
NC_011502
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 8
JF490370

human/Victoria/CK00030/2

006/G1P[8]

Rotavirus A
NC_011503
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 9
JF490374

human/Victoria/CK00030/2

006/G1P[8]

Rotavirus A
NC_011504
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg.
JF490373

human/Victoria/CK00030/2

10

006/G1P[8]

Rotavirus A
NC_011505
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg.
JF490372

human/Victoria/CK00030/2

11

006/G1P[8]

Rotavirus A
NC_011506
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 2
JF490379

human/Victoria/CK00030/2

006/G1P[8]

Rotavirus A
NC_011507
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 1
JF490369

human/Victoria/CK00030/2

006/G1P[8]

Rotavirus A
NC_011508
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 3
JF490377

human/Victoria/CK00030/2

006/G1P[8]

Rotavirus A
NC_011509
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 6
JF490376

human/Victoria/CK00030/2

006/G1P[8]

Rotavirus A
NC_011510
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 4
JF490378

human/Victoria/CK00030/2

006/G1P[8]

Rotavirus A
NC_011500
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 5
JF490382

human/Victoria/CK00032/2

006/G1P[8]

Rotavirus A
NC_011501
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 7
JF490386

human/Victoria/CK00032/2

006/G1P[8]

Rotavirus A
NC_011502
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 8
JF490381

human/Victoria/CK00032/2

006/G1P[8]

Rotavirus A
NC_011503
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 9
JF490385

human/Victoria/CK00032/2

006/G1P[8]

Rotavirus A
NC_011504
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg.
JF490384

human/Victoria/CK00032/2

10

006/G1P[8]

Rotavirus A
NC_011505
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg.
JF490383

human/Victoria/CK00032/2

11

006/G1P[8]

Rotavirus A
NC_011506
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 2
JF490390

human/Victoria/CK00032/2

006/G1P[8]

Rotavirus A
NC_011507
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 1
JF490380

human/Victoria/CK00032/2

006/G1P[8]

Rotavirus A
NC_011508
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 3
JF490389

human/Victoria/CK00032/2

006/G1P[8]

Rotavirus A
NC_011509
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 6
JF490387

human/Victoria/CK00032/2

006/G1P[8]

Rotavirus A
NC_011510
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 4
JF490388

human/Victoria/CK00032/2

006/G1P[8]

Rotavirus A
NC_011500
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 5
JF490393

human/Victoria/CK00033/2

007/G1P[8]

Rotavirus A
NC_011501
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 7
JF490397

human/Victoria/CK00033/2

007/G1P[8]

Rotavirus A
NC_011502
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 8
JF490392

human/Victoria/CK00033/2

007/G1P[8]

Rotavirus A
NC_011503
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 9
JF490396

human/Victoria/CK00033/2

007/G1P[8]

Rotavirus A
NC_011504
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg.
JF490395

human/Victoria/CK00033/2

10

007/G1P[8]

Rotavirus A
NC_011505
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg.
JF490394

human/Victoria/CK00033/2

11

007/G1P[8]

Rotavirus A
NC_011506
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 2
JF490401

human/Victoria/CK00033/2

007/G1P[8]

Rotavirus A
NC_011507
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 1
JF490391

human/Victoria/CK00033/2

007/G1P[8]

Rotavirus A
NC_011508
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 3
JF490400

human/Victoria/CK00033/2

007/G1P[8]

Rotavirus A
NC_011509
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 6
JF490398

human/Victoria/CK00033/2

007/G1P[8]

Rotavirus A
NC_011510
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 4
JF490399

human/Victoria/CK00033/2

007/G1P[8]

Rotavirus A
NC_011500
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 5
JF490410

human/Victoria/CK00034/2

007/G1P[8]

Rotavirus A
NC_011501
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 7
JF490407

human/Victoria/CK00034/2

007/G1P[8]

Rotavirus A
NC_011502
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 8
JF490403

human/Victoria/CK00034/2

007/G1P[8]

Rotavirus A
NC_011503
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 9
JF490406

human/Victoria/CK00034/2

007/G1P[8]

Rotavirus A
NC_011504
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg.
JF490405

human/Victoria/CK00034/2

10

007/G1P[8]

Rotavirus A
NC_011505
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg.
JF490404

human/Victoria/CK00034/2

11

007/G1P[8]

Rotavirus A
NC_011506
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 2
JF490412

human/Victoria/CK00034/2

007/G1P[8]

Rotavirus A
NC_011507
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 1
JF490402

human/Victoria/CK00034/2

007/G1P[8]

Rotavirus A
NC_011508
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 3
JF490411

human/Victoria/CK00034/2

007/G1P[8]

Rotavirus A
NC_011509
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 6
JF490408

human/Victoria/CK00034/2

007/G1P[8]

Rotavirus A
NC_011510
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 4
JF490409

human/Victoria/CK00034/2

007/G1P[8]

Rotavirus A
NC_011500
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 5
JF490415

human/Victoria/CK00035/2

005/G1P[8]

Rotavirus A
NC_011501
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 7
JF490419

human/Victoria/CK00035/2

005/G1P[8]

Rotavirus A
NC_011502
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 8
JF490414

human/Victoria/CK00035/2

005/G1P[8]

Rotavirus A
NC_011503
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 9
JF490418

human/Victoria/CK00035/2

005/G1P[8]

Rotavirus A
NC_011504
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg.
JF490417

human/Victoria/CK00035/2

10

005/G1P[8]

Rotavirus A
NC_011505
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg.
JF490416

human/Victoria/CK00035/2

11

005/G1P[8]

Rotavirus A
NC_011506
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 2
JF490423

human/Victoria/CK00035/2

005/G1P[8]

Rotavirus A
NC_011507
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 1
JF490413

human/Victoria/CK00035/2

005/G1P[8]

Rotavirus A
NC_011508
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 3
JF490422

human/Victoria/CK00035/2

005/G1P[8]

Rotavirus A
NC_011509
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 6
JF490420

human/Victoria/CK00035/2

005/G1P[8]

Rotavirus A
NC_011510
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 4
JF490421

human/Victoria/CK00035/2

005/G1P[8]

Rotavirus A
NC_011500
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 5
JF490434

human/Victoria/CK00036/2

005/G1P[8]

Rotavirus A
NC_011501
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 7
JF490429

human/Victoria/CK00036/2

005/G1P[8]

Rotavirus A
NC_011502
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 8
JF490425

human/Victoria/CK00036/2

005/G1P[8]

Rotavirus A
NC_011503
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 9
JF490428

human/Victoria/CK00036/2

005/G1P[8]

Rotavirus A
NC_011504
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg.
JF490427

human/Victoria/CK00036/2

10

005/G1P[8]

Rotavirus A
NC_011505
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg.
JF490426

human/Victoria/CK00036/2

11

005/G1P[8]

Rotavirus A
NC_011506
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 2
JF490433

human/Victoria/CK00036/2

005/G1P[8]

Rotavirus A
NC_011507
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 1
JF490424

human/Victoria/CK00036/2

005/G1P[8]

Rotavirus A
NC_011508
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 3
JF490432

human/Victoria/CK00036/2

005/G1P[8]

Rotavirus A
NC_011509
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 6
JF490430

human/Victoria/CK00036/2

005/G1P[8]

Rotavirus A
NC_011510
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 4
JF490431

human/Victoria/CK00036/2

005/G1P[8]

Rotavirus A
NC_011500
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 5
JF490443

human/Victoria/CK00037/2

006/G1P[8]

Rotavirus A
NC_011501
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 7
JF490439

human/Victoria/CK00037/2

006/G1P[8]

Rotavirus A
NC_011502
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 8
JF490436

human/Victoria/CK00037/2

006/G1P[8]

Rotavirus A
NC_011503
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 9
JF490444

human/Victoria/CK00037/2

006/G1P[8]

Rotavirus A
NC_011504
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg.
JF490438

human/Victoria/CK00037/2

10

006/G1P[8]

Rotavirus A
NC_011505
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg.
JF490437

human/Victoria/CK00037/2

11

006/G1P[8]

Rotavirus A
NC_011506
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 2
JF490445

human/Victoria/CK00037/2

006/G1P[8]

Rotavirus A
NC_011507
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 1
JF490435

human/Victoria/CK00037/2

006/G1P[8]

Rotavirus A
NC_011508
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 3
JF490442

human/Victoria/CK00037/2

006/G1P[8]

Rotavirus A
NC_011509
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 6
JF490440

human/Victoria/CK00037/2

006/G1P[8]

Rotavirus A
NC_011510
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 4
JF490441

human/Victoria/CK00037/2

006/G1P[8]

Rotavirus A
NC_011500
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 5
JF490448

human/Victoria/CK00039/2

006/G1P[8]

Rotavirus A
NC_011501
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 7
JF490452

human/Victoria/CK00039/2

006/G1P[8]

Rotavirus A
NC_011502
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 8
JF490447

human/Victoria/CK00039/2

006/G1P[8]

Rotavirus A
NC_011503
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 9
JF490451

human/Victoria/CK00039/2

006/G1P[8]

Rotavirus A
NC_011504
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg.
JF490450

human/Victoria/CK00039/2

10

006/G1P[8]

Rotavirus A
NC_011505
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg.
JF490449

human/Victoria/CK00039/2

11

006/G1P[8]

Rotavirus A
NC_011506
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 2
JF490456

human/Victoria/CK00039/2

006/G1P[8]

Rotavirus A
NC_011507
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 1
JF490446

human/Victoria/CK00039/2

006/G1P[8]

Rotavirus A
NC_011508
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 3
JF490455

human/Victoria/CK00039/2

006/G1P[8]

Rotavirus A
NC_011509
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 6
JF490453

human/Victoria/CK00039/2

006/G1P[8]

Rotavirus A
NC_011510
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 4
JF490454

human/Victoria/CK00039/2

006/G1P[8]

Rotavirus A
NC_011500
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 5
JF490459

human/Victoria/CK00040/2

006/G1P[8]

Rotavirus A
NC_011501
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 7
JF490463

human/Victoria/CK00040/2

006/G1P[8]

Rotavirus A
NC_011502
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 8
JF490458

human/Victoria/CK00040/2

006/G1P[8]

Rotavirus A
NC_011503
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 9
JF490462

human/Victoria/CK00040/2

006/G1P[8]

Rotavirus A
NC_011504
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg.
JF490461

human/Victoria/CK00040/2

10

006/G1P[8]

Rotavirus A
NC_011505
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg.
JF490460

human/Victoria/CK00040/2

11

006/G1P[8]

Rotavirus A
NC_011506
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 2
JF490467

human/Victoria/CK00040/2

006/G1P[8]

Rotavirus A
NC_011507
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 1
JF490457

human/Victoria/CK00040/2

006/G1P[8]

Rotavirus A
NC_011508
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 3
JF490466

human/Victoria/CK00040/2

006/G1P[8]

Rotavirus A
NC_011509
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 6
JF490464

human/Victoria/CK00040/2

006/G1P[8]

Rotavirus A
NC_011510
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 4
JF490465

human/Victoria/CK00040/2

006/G1P[8]

Rotavirus A
NC_011500
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 5
JF490470

human/Victoria/CK00041/2

006/G1P[8]

Rotavirus A
NC_011501
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 7
JF490474

human/Victoria/CK00041/2

006/G1P[8]

Rotavirus A
NC_011502
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 8
JF490469

human/Victoria/CK00041/2

006/G1P[8]

Rotavirus A
NC_011503
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 9
JF490473

human/Victoria/CK00041/2

006/G1P[8]

Rotavirus A
NC_011504
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg.
JF490472

human/Victoria/CK00041/2

10

006/G1P[8]

Rotavirus A
NC_011505
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg.
JF490471

human/Victoria/CK00041/2

11

006/G1P[8]

Rotavirus A
NC_011506
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 2
JF490478

human/Victoria/CK00041/2

006/G1P[8]

Rotavirus A
NC_011507
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 1
JF490468

human/Victoria/CK00041/2

006/G1P[8]

Rotavirus A
NC_011508
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 3
JF490477

human/Victoria/CK00041/2

006/G1P[8]

Rotavirus A
NC_011509
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 6
JF490475

human/Victoria/CK00041/2

006/G1P[8]

Rotavirus A
NC_011510
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 4
JF490476

human/Victoria/CK00041/2

006/G1P[8]

Rotavirus A
NC_011500
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 5
JF490481

human/Victoria/CK00043/2

006/G1P[8]

Rotavirus A
NC_011501
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 7
JF490485

human/Victoria/CK00043/2

006/G1P[8]

Rotavirus A
NC_011502
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 8
JF490480

human/Victoria/CK00043/2

006/G1P[8]

Rotavirus A
NC_011503
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 9
JF490484

human/Victoria/CK00043/2

006/G1P[8]

Rotavirus A
NC_011504
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg.
JF490483

human/Victoria/CK00043/2

10

006/G1P[8]

Rotavirus A
NC_011505
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg.
JF490482

human/Victoria/CK00043/2

11

006/G1P[8]

Rotavirus A
NC_011506
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 2
JF490489

human/Victoria/CK00043/2

006/G1P[8]

Rotavirus A
NC_011507
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 1
JF490479

human/Victoria/CK00043/2

006/G1P[8]

Rotavirus A
NC_011508
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 3
JF490488

human/Victoria/CK00043/2

006/G1P[8]

Rotavirus A
NC_011509
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 6
JF490486

human/Victoria/CK00043/2

006/G1P[8]

Rotavirus A
NC_011510
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 4
JF490487

human/Victoria/CK00043/2

006/G1P[8]

Rotavirus A
NC_011500
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 5
JF490495

human/Victoria/CK00045/2

006/G1P[8]

Rotavirus A
NC_011501
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 7
JF490499

human/Victoria/CK00045/2

006/G1P[8]

Rotavirus A
NC_011502
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 8
JF490494

human/Victoria/CK00045/2

006/G1P[8]

Rotavirus A
NC_011503
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 9
JF490498

human/Victoria/CK00045/2

006/G1P[8]

Rotavirus A
NC_011504
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg.
JF490497

human/Victoria/CK00045/2

10

006/G1P[8]

Rotavirus A
NC_011505
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg.
JF490496

human/Victoria/CK00045/2

11

006/G1P[8]

Rotavirus A
NC_011506
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 2
JF490493

human/Victoria/CK00045/2

006/G1P[8]

Rotavirus A
NC_011507
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 1
JF490490

human/Victoria/CK00045/2

006/G1P[8]

Rotavirus A
NC_011508
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 3
JF490492

human/Victoria/CK00045/2

006/G1P[8]

Rotavirus A
NC_011509
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 6
JF490500

human/Victoria/CK00045/2

006/G1P[8]

Rotavirus A
NC_011510
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 4
JF490491

human/Victoria/CK00045/2

006/G1P[8]

Rotavirus A
NC_011500
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 5
JF490503

human/Victoria/CK00046/2

006/G1P[8]

Rotavirus A
NC_011501
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 7
JF490507

human/Victoria/CK00046/2

006/G1P[8]

Rotavirus A
NC_011502
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 8
JF490502

human/Victoria/CK00046/2

006/G1P[8]

Rotavirus A
NC_011503
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 9
JF490506

human/Victoria/CK00046/2

006/G1P[8]

Rotavirus A
NC_011504
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg.
JF490505

human/Victoria/CK00046/2

10

006/G1P[8]

Rotavirus A
NC_011505
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg.
JF490504

human/Victoria/CK00046/2

11

006/G1P[8]

Rotavirus A
NC_011506
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 2
JF490511

human/Victoria/CK00046/2

006/G1P[8]

Rotavirus A
NC_011507
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 1
JF490501

human/Victoria/CK00046/2

006/G1P[8]

Rotavirus A
NC_011508
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 3
JF490510

human/Victoria/CK00046/2

006/G1P[8]

Rotavirus A
NC_011509
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 6
JF490508

human/Victoria/CK00046/2

006/G1P[8]

Rotavirus A
NC_011510
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 4
JF490509

human/Victoria/CK00046/2

006/G1P[8]

Rotavirus A
NC_011500
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 5
JF490514

human/Victoria/CK00047/2

006/G1P[8]

Rotavirus A
NC_011501
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 7
JF490518

human/Victoria/CK00047/2

006/G1P[8]

Rotavirus A
NC_011502
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 8
JF490513

human/Victoria/CK00047/2

006/G1P[8]

Rotavirus A
NC_011503
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 9
JF490517

human/Victoria/CK00047/2

006/G1P[8]

Rotavirus A
NC_011504
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg.
JF490516

human/Victoria/CK00047/2

10

006/G1P[8]

Rotavirus A
NC_011505
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg.
JF490515

human/Victoria/CK00047/2

11

006/G1P[8]

Rotavirus A
NC_011506
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 2
JF490522

human/Victoria/CK00047/2

006/G1P[8]

Rotavirus A
NC_011507
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 1
JF490512

human/Victoria/CK00047/2

006/G1P[8]

Rotavirus A
NC_011508
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 3
JF490521

human/Victoria/CK00047/2

006/G1P[8]

Rotavirus A
NC_011509
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 6
JF490519

human/Victoria/CK00047/2

006/G1P[8]

Rotavirus A
NC_011510
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 4
JF490520

human/Victoria/CK00047/2

006/G1P[8]

Rotavirus A
NC_011500
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 5
JF490525

human/Victoria/CK00048/2

004/G1P[8]

Rotavirus A
NC_011501
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 7
JF490529

human/Victoria/CK00048/2

004/G1P[8]

Rotavirus A
NC_011502
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 8
JF490524

human/Victoria/CK00048/2

004/G1P[8]

Rotavirus A
NC_011503
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 9
JF490528

human/Victoria/CK00048/2

004/G1P[8]

Rotavirus A
NC_011504
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg.
JF490527

human/Victoria/CK00048/2

10

004/G1P[8]

Rotavirus A
NC_011505
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg.
JF490526

human/Victoria/CK00048/2

11

004/G1P[8]

Rotavirus A
NC_011506
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 2
JF490533

human/Victoria/CK00048/2

004/G1P[8]

Rotavirus A
NC_011507
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 1
JF490523

human/Victoria/CK00048/2

004/G1P[8]

Rotavirus A
NC_011508
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 3
JF490532

human/Victoria/CK00048/2

004/G1P[8]

Rotavirus A
NC_011509
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 6
JF490530

human/Victoria/CK00048/2

004/G1P[8]

Rotavirus A
NC_011510
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 4
JF490531

human/Victoria/CK00048/2

004/G1P[8]

Rotavirus A
NC_011500
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 5
JF490536

human/Victoria/CK00049/2

004/G1P[8]

Rotavirus A
NC_011501
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 7
JF490540

human/Victoria/CK00049/2

004/G1P[8]

Rotavirus A
NC_011502
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 8
JF490535

human/Victoria/CK00049/2

004/G1P[8]

Rotavirus A
NC_011503
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 9
JF490539

human/Victoria/CK00049/2

004/G1P[8]

Rotavirus A
NC_011504
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg.
JF490538

human/Victoria/CK00049/2

10

004/G1P[8]

Rotavirus A
NC_011505
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg.
JF490537

human/Victoria/CK00049/2

11

004/G1P[8]

Rotavirus A
NC_011506
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 2
JF490544

human/Victoria/CK00049/2

004/G1P[8]

Rotavirus A
NC_011507
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 1
JF490534

human/Victoria/CK00049/2

004/G1P[8]

Rotavirus A
NC_011508
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 3
JF490542

human/Victoria/CK00049/2

004/G1P[8]

Rotavirus A
NC_011509
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 6
JF490541

human/Victoria/CK00049/2

004/G1P[8]

Rotavirus A
NC_011510
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 4
JF490543

human/Victoria/CK00049/2

004/G1P[8]

Rotavirus A
NC_011500
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 5
JF490553

human/Victoria/CK00050/2

005/G1P[8]

Rotavirus A
NC_011501
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 7
JF490550

human/Victoria/CK00050/2

005/G1P[8]

Rotavirus A
NC_011502
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 8
JF490546

human/Victoria/CK00050/2

005/G1P[8]

Rotavirus A
NC_011503
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 9
JF490549

human/Victoria/CK00050/2

005/G1P[8]

Rotavirus A
NC_011504
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg.
JF490548

human/Victoria/CK00050/2

10

005/G1P[8]

Rotavirus A
NC_011505
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg.
JF490547

human/Victoria/CK00050/2

11

005/G1P[8]

Rotavirus A
NC_011506
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 2
JF490555

human/Victoria/CK00050/2

005/G1P[8]

Rotavirus A
NC_011507
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 1
JF490545

human/Victoria/CK00050/2

005/G1P[8]

Rotavirus A
NC_011508
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 3
JF490552

human/Victoria/CK00050/2

005/G1P[8]

Rotavirus A
NC_011509
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 6
JF490551

human/Victoria/CK00050/2

005/G1P[8]

Rotavirus A
NC_011510
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 4
JF490554

human/Victoria/CK00050/2

005/G1P[8]

Rotavirus A pheasant-
NC_011502
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 8
JX204816

tc/GER/10V0112H5/2010/

G23P[37]

Rotavirus A pheasant-
NC_011503
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 9
JX204818

tc/GER/10V0112H5/2010/

G23P[37]

Rotavirus A pheasant-
NC_011506
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 2
JX204812

tc/GER/10V0112H5/2010/

G23P[37]

Rotavirus A pheasant-
NC_011507
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 1
JX204811

tc/GER/10V0112H5/2010/

G23P[37]

Rotavirus A pheasant-
NC_011508
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 3
JX204813

tc/GER/10V0112H5/2010/

G23P[37]

Rotavirus A pheasant-
NC_011509
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 6
JX204815

tc/GER/10V0112H5/2010/

G23P[37]

Rotavirus A pheasant-
NC_011510
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 4
JX204814

tc/GER/10V0112H5/2010/

G23P[37]

Rotavirus A
NC_011503
vertebrates,human
3
Reoviridae,Rotavirus,Rotavirus A
seg. 9
FN393054,FN393055

pheasant/HUN/2008

,FN393056

Rotavirus A sable
NC_011500
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 5
FJ495130

antelope/G6P[14]

Rotavirus A sable
NC_011501
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 7
FJ495134

antelope/G6P[14]

Rotavirus A sable
NC_011502
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 8
FJ495132

antelope/G6P[14]

Rotavirus A sable
NC_011503
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 9
FJ495133

antelope/G6P[14]

Rotavirus A sable
NC_011504
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg.
FJ495135

antelope/G6P[14]

10

Rotavirus A sable
NC_011505
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg.
FJ495136

antelope/G6P[14]

11

Rotavirus A sable
NC_011506
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 2
FJ495127

antelope/G6P[14]

Rotavirus A sable
NC_011507
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 1
FJ495126

antelope/G6P[14]

Rotavirus A sable
NC_011508
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 3
FJ495128

antelope/G6P[14]

Rotavirus A sable
NC_011509
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 6
FJ495131

antelope/G6P[14]

Rotavirus A sable
NC_011510
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 4
FJ495129

antelope/G6P[14]

Rotavirus A strain 116E/AG
NC_011500
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 5
FJ361205

Rotavirus A strain 116E/AG
NC_011501
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 7
FJ361207

Rotavirus A strain 116E/AG
NC_011502
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 8
FJ361208

Rotavirus A strain 116E/AG
NC_011503
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 9
FJ361209

Rotavirus A strain 116E/AG
NC_011504
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg.
FJ361210

10

Rotavirus A strain 116E/AG
NC_011505
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg.
FJ361211

11

Rotavirus A strain 116E/AG
NC_011506
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 2
FJ361202

Rotavirus A strain 116E/AG
NC_011507
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 1
FJ361201

Rotavirus A strain 116E/AG
NC_011508
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 3
FJ361203

Rotavirus A strain 116E/AG
NC_011509
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 6
FJ361206

Rotavirus A strain 116E/AG
NC_011510
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 4
FJ361204

Rotavirus A turkey-
NC_011502
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 8
JX204827

tc/GER/03V0002E10/2003/

G22P[35]

Rotavirus A turkey-
NC_011503
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 9
JX204829

tc/GER/03V0002E10/2003/

G22P[35]

Rotavirus A turkey-
NC_011506
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 2
JX204823

tc/GER/03V0002E10/2003/

G22P[35]

Rotavirus A turkey-
NC_011507
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 1
JX204822

tc/GER/03V0002E10/2003/

G22P[35]

Rotavirus A turkey-
NC_011508
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 3
JX204824

tc/GER/03V0002E10/2003/

G22P[35]

Rotavirus A turkey-
NC_011509
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 6
JX204826

tc/GER/03V0002E10/2003/

G22P[35]

Rotavirus A turkey-
NC_011510
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 4
JX204825

tc/GER/03V0002E10/2003/

G22P[35]

Rotavirus B
NC_021541
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus B
seg. 1
M97203

Rotavirus B
NC_021544
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus B
seg. 6
AF079157

Rotavirus B
NC_021549
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus B
seg.
AF079158

11

Rotavirus C
NC_007543
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus C
seg. 6
AJ132203

Rotavirus C
NC_007544
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus C
seg. 7
AJ132204

Rotavirus C
NC_007545
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus C
seg. 9
AJ132205

Rotavirus C
NC_007546
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus C
seg. 2
AJ303139

Rotavirus C
NC_007547
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus C
seg. 1
AJ304859

Rotavirus C
NC_007569
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus C
seg.
M81488

10

Rotavirus C
NC_007570
vertebrates,human
4
Reoviridae,Rotavirus,Rotavirus C
seg. 5
AF162434,M88768,E

F528570,X59843

Rotavirus C
NC_007571
vertebrates,human
15
Reoviridae,Rotavirus,Rotavirus C
seg. 8
U20990,U20989,U20

994,U20991,U20993,

X77257,U20992,X772

58,EF528571,X77256

,AJ549087,U20996,U

20987,U20995,U2098

8

Rotavirus C
NC_007572
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus C
seg. 3
X79442

Rotavirus C
NC_007573
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus C
seg.
X83967

11

Rotavirus C
NC_007574
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus C
seg. 4
X96697

Rotavirus F
NC_021625
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus F
seg. 1
JN596591

chicken/03V0568/DEU/2003

Rotavirus F
NC_021626
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus F
seg. 2
JQ919995

chicken/03V0568/DEU/2003

Rotavirus F
NC_021627
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus F
seg. 9
JQ919998

chicken/03V0568/DEU/2003

Rotavirus F
NC_021628
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus F
seg. 8
JQ920000

chicken/03V0568/DEU/2003

Rotavirus F
NC_021629
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus F
seg.
JQ920003

chicken/03V0568/DEU/2003

10

Rotavirus F
NC_021630
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus F
seg. 4
JQ919996

chicken/03V0568/DEU/2003

Rotavirus F
NC_021631
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus F
seg. 3
JQ919997

chicken/03V0568/DEU/2003

Rotavirus F
NC_021632
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus F
seg. 5
JQ919999

chicken/03V0568/DEU/2003

Rotavirus F
NC_021633
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus F
seg. 7
JQ920001

chicken/03V0568/DEU/2003

Rotavirus F
NC_021634
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus F
seg.
JQ920002

chicken/03V0568/DEU/2003

11

Rotavirus F
NC_021635
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus F
seg. 6
HQ403603

chicken/03V0568/DEU/2003

Rotavirus G
NC_021580
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus G
—
JQ920004

chicken/03V0567/DEU/2003

Rotavirus G
NC_021581
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus G
—
JQ920006

chicken/03V0567/DEU/2003

Rotavirus G
NC_021582
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus G
—
JQ920007

chicken/03V0567/DEU/2003

Rotavirus G
NC_021583
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus G
—
JQ920008

chicken/03V0567/DEU/2003

Rotavirus G
NC_021584
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus G
—
JQ920009

chicken/03V0567/DEU/2003

Rotavirus G
NC_021585
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus G
—
JQ920010

chicken/03V0567/DEU/2003

Rotavirus G
NC_021586
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus G
—
JQ920011

chicken/03V0567/DEU/2003

Rotavirus G
NC_021587
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus G
—
JQ920012

chicken/03V0567/DEU/2003

Rotavirus G
NC_021588
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus G
—
HQ403604

chicken/03V0567/DEU/2003

Rotavirus G
NC_021589
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus G
—
JQ920005

chicken/03V0567/DEU/2003

Rotavirus G
NC_021590
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus G
—
JN596592

chicken/03V0567/DEU/2003

Rotavirus G1
NC_011503
vertebrates,human
11
Reoviridae,Rotavirus,Rotavirus A
seg. 9
EU839916,EU839911

,EU839909,EU83991

3,EU839912,EU8399

10,EU839915,EU839

908,EU839907,EU83

9906,EU839914

19

Rotavirus G1
NC_011504
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg.
AY159645,AY159638

10
,AY159631,AY15963

6,AY159632,AY1596

46,AY159633,AY159

642,AY159643,AY15

9634,AY159644,AY1

59641,AY159640,AY

159630,AY159637,A

Y159639,AY159648,

AY159635,AY159647

Rotavirus G10
NC_011503
vertebrates,human
7
Reoviridae,Rotavirus,Rotavirus A
seg. 9
AY816181,JF681943,

AY843333,AY816182

,AY855063,JF681941

,AY843332

Rotavirus G10
NC_011504
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg.
AY855068

10

Rotavirus G12
NC_011501
vertebrates,human
2
Reoviridae,Rotavirus,Rotavirus A
seg. 7
EU839967,EU839973

Rotavirus G12
NC_011502
vertebrates,human
2
Reoviridae,Rotavirus,Rotavirus A
seg. 8
EU839968,EU839974

Rotavirus G12
NC_011503
vertebrates,human
18
Reoviridae,Rotavirus,Rotavirus A
seg. 9
AB436818,AB436813

,EU839943,EU83993

4,AB436814,EU8399

44,AB436815,EU839

942,EF059916,AB436

816,AB306271,AB43

6817,AB306270,EF05

9917,AB306268,EU8

39935,AB306269,AB

436819

Rotavirus G12
NC_011504
vertebrates,human
4
Reoviridae,Rotavirus,Rotavirus A
seg.
EU839969,EF059919

10
,EU839975,EF059918

Rotavirus G12
NC_011505
vertebrates,human
2
Reoviridae,Rotavirus,Rotavirus A
seg.
EU839970,EU839976

11

Rotavirus G12
NC_011509
vertebrates,human
2
Reoviridae,Rotavirus,Rotavirus A
seg. 6
EU839965,EU839971

Rotavirus G12
NC_011510
vertebrates,human
2
Reoviridae,Rotavirus,Rotavirus A
seg. 4
EF059921,EF059920

Rotavirus G2
NC_011503
vertebrates,human
16
Reoviridae,Rotavirus,Rotavirus A
seg. 9
AY707784,EU839925

,EU839919,EU83992

1,AY707785,EU8399

17,EU839926,EU839

918,EU839923,DQ47

8581,EU839924,EU8

39920,EU839922,EU

839928,AY707786,E

U839927

Rotavirus G2
NC_011504
vertebrates,human
3
Reoviridae,Rotavirus,Rotavirus A
seg.
AY159649,AF401756,

10
EU839964

Rotavirus G2
NC_011509
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 6
EU839963

Rotavirus G3
NC_011500
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 5
AY740735

Rotavirus G3
NC_011501
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 7
AY740734

Rotavirus G3
NC_011502
vertebrates,human
2
Reoviridae,Rotavirus,Rotavirus A
seg. 8
JQ358771,AY740733

Rotavirus G3
NC_011503
vertebrates,human
51
Reoviridae,Rotavirus,Rotavirus A
seg. 9
EF495119,EF495124,

AY707791,D86276,E

F495121,EF495127,D

0904498,D86266,D8

6280,D86264,D86282

,JQ358764,D86269,D

86265,AY707789,AY

707792,EF495122,D

0904499,DQ995488,

DQ995489,D86283,D

0904503,EF495118,

DQ904500,DQ90450

5,AY870661,DQ9045

06,EF495120,D86284

,D86281,DQ904502,

D86279,DQ904501,D

86271,DQ995490,D8

72,AY900173,AY707

794,EF495126,D8627

8,D86268,D86267,D8

6274,EF495123,AY74

0736,DQ904504,AY7

07793,EF495125,D86

275

Rotavirus G3
NC_011504
vertebrates,human
21
Reoviridae,Rotavirus,Rotavirus A
seg.
AB008240,AB008236

10
,AB008234,AB00824

6,AB008230,AB0082

33,AB008237,AY740

732,AB008242,AB0O

8238,AB008243,AB0

08231,AB008244,AB

008232,AB008245,A

B008248,AB008247,

AB008241,AB008239

,AB008229,AB00823

5

Rotavirus G3
NC_011505
vertebrates,human
2
Reoviridae,Rotavirus,Rotavirus A
seg.
JQ358774,AY740731

11

Rotavirus G3
NC_011506
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 2
AY740740

Rotavirus G3
NC_011507
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 1
AY740741

Rotavirus G3
NC_011508
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 3
AY740739

Rotavirus G3
NC_011509
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 6
AY740737

Rotavirus G3
NC_011510
vertebrates,human
20
Reoviridae,Rotavirus,Rotavirus A
seg. 4
AY740738,AB008277

,AB008279,AB00827

8,AB008290,AB0082

91,AB008282,AB0O8

289,AB008281,AB0O

8272,AB008273,AB0

08274,AB008285,AB

008275,AB008284,A

B008286,AB008283,

AB008280,AB008276

,AB008288

Rotavirus G4
NC_011503
vertebrates,human
33
Reoviridae,Rotavirus,Rotavirus A
seg. 9
AB012066,AB012074

,AF161822,AB039035

,AB012075,AB03902

6,AB039027,AB0120

71,AB039025,AB012

078,AF161821,AB039

029,AF161823,AB012

069,AF161817,AB012

065,AB012079,AB03

9028,AB012072,AF16

1818,AB039032,AB0

12077,AB012067,AB

012076,AB012073,A

B039031,AB012068,

AB012070,AF161820,

AB039030,AF161819,

AB039034,AB039033

Rotavirus G4
NC_011504
vertebrates,human
33
Reoviridae,Rotavirus,Rotavirus A
seg.
AB008255,AB008261

10
,AF161810,AB043069

,AF161815,AB043026

,AB008251,AB00826

0,AB008253,AB0082

62,AB008249,AF1618

11,AB043072,AB043

075,AF161813,AB0O8

258,AB043076,AF161

816,AB008259,AB0O

8252,AB008263,AB0

43077,AB008256,AB

043073,AB043070,A

B043078,AB043074,

AF161814,AB008250,

AB043071,AB008257

,AB008254,AF161812

Rotavirus G6
NC_011503
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 9
AF532202

Rotavirus G8
NC_011503
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 9
AY855064

Rotavirus G8
NC_011510
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 4
AF045228

Rotavirus G9
NC_011503
vertebrates,human
156
Reoviridae,Rotavirus,Rotavirus A
seg. 9
AY253834,AJ250544,

AB436831,AJ250276,

EF199728,AB436820,

AY699298,AB436832

,AY262748,AY69930

2,AY307092,AY3070

88,AY307094,AB436

833,AY866500,AY87

9296,AY699301,EF19

9729,AY253835,AY6

99291,FJ695604,EF1

99735,AJ250275,AY2

11065,AJ250270,EU8

39936,AJ250269,DQ

647423,EU839929,E

U839939,EF199736,

AB436821,DQ056298

,AY699292,AB09175

2,EF532837,AY69929

0,AB436822,EF19973

8,AB091755,EU8399

37,AY262747,AY211

067,AJ250268,AB364

369,EU839933,AY25

3836,AB436834,AJ25

0274,EU839932,AY6

99293,DQ056299,AJ

250277,DQ056300,E

F199737,HQ018933,J

F703095,DQ096290,

AY695811,AY211068

,HQ018932,AY25383

3,AY866504,EU8399

40,AY699294,AJ4911

79,DQ056297,EF199

730,AB091750,AJ491

177,AB436826,DQ05

6296,AY699297,AJ25

0272,EU839930,AB0

91751,JF703094,DQO

96288,EF199732,EF1

99726,AB091748,EF1

99734,AY253838,DQ

990318,AY262746,A

Y253839,EF687001,E

U839938,AY699296,

AY184813,AY307087

,AB436824,AJ491184

,AY699299,AB36438

0,AB045372,DQ0962

93,EF199727,AJ2502

73,EF059922,DQ096

292,AB436835,AY30

7086,AB436830,AB0

91754,AY307093,DQ

096289,AY699304,A

Y695809,AB091749,

AY262749,EF199725,

AB091756,DQ990319

,AY307091,AJ491175

,AY866502,AB43682

7,AB436825,AB0453

73,HQ018934,DQ096

294,AY699303,DQ99

0317,DQ096291,AB4

36829,AY866505,AY

253837,EU753963,A

B436823,AY866501,

AY866503,AB091747

,EU839941,EF19973

1,AB436828,AY3070

85,JF703096,AB0917

53,AF359358,AJ2505

40,AY307090,DQ490

173,EF199733,AB091

746,AY816184,AB04

5374,AJ250271,EU83

9931,AJ491172,AJ25

0545,AY699300,AY3

07089,AY699295,AY

211066,JF703097

Rotavirus G9
NC_011504
vertebrates,human
4
Reoviridae,Rotavirus,Rotavirus A
seg.
EF033203,EF059924,

10
EF033202,EF033204

Rotavirus G9
NC_011509
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 6
EU753964

Rotavirus G9
NC_011510
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 4
EF059923

Rotavirus
NC_011503
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 9
JX411969

RVA/G1/Human/India/UK-

HLD/2011/H14

Rotavirus
NC_011503
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 9
JX411970

RVA/G1/Human/India/UK-

HLD/2011/H180

Rotavirus
NC_011503
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 9
JX411968

RVA/G9/Human/India/UK-

HLD/2011/H140

Rotavirus str,US1205
NC_011503
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 9
AF060487

Rotavirus strain TUCH
NC_011509
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 6
AY594670

Rotavirus strain TUCH
NC_011510
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 4
AY596189

Rotavirus subgroup 1
NC_011503
vertebrates,human
2
Reoviridae,Rotavirus,Rotavirus A
seg. 9
K02028,L11605

Rotavirus subgroup 1
NC_011504
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg.
K03384

10

Rotavirus subgroup 1
NC_011505
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg.
K03385

11

Rotavirus subgroup 1
NC_011509
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 6
DQ0325

Rotavirus subgroup 2
NC_011501
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 7
X57944

Rotavirus subgroup 2
NC_011503
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 9
K02033

Rotavirus subgroup 2
NC_011504
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg.
K02032

10

Rotavirus subgroup 2
NC_011509
vertebrates,human
2
Reoviridae,Rotavirus,Rotavirus A
seg. 6
X57943,K02086

Rubella virus
NC_001545
vertebrates,human
47
Togaviridae,Rubivirus,Rubella virus
—
AY258323,JN635281,

JN635282,JN635292,

JN635285,AF435866,

JN635296,DQ085341

,AB047329,AF435865

,AB588193,DQ08534

0,L78917,JN635290,

AB588188,AB047330

,JN635293,JN635288

,AB222608,JN635284

,DQ388281,JN63529

1,JF727653,FJ21158

8,JN635287,AB22260

9,KF201674,AB58819

1,JN635295,JN63528

3,AB588192,JN63528

9,AF188704,AY25832

2,AB588189,JN63529

4,DQ388280,JF72765

4,DQ085342,AB5881

90,M15240,DQ08534

3,FJ211587,DQ08533

9,JN635286,DQ0853

38,DQ388279

SARS Coronavirus
NC_004718
vertebrates,human
1
Coronaviridae,Betacoronavirus,Severe acute
—
AY714217

CDC#200301157

respiratory syndrome-related coronavirus

SARS coronavirus
NC_004718
vertebrates,human
25
Coronaviridae,Betacoronavirus,Severe acute
—
AY545914,JX163925,

respiratory syndrome-related coronavirus

AY545917,CS569493

,C0918585,DQ89817

4,JX163923,C09185

84,CS079026,CS079

027,JX163924,JX163

926,AY545916,JX163

928,DQ497008,CS07

9029,JX163927,CS07

9028,CS254197,AY5

45918,C0918598,FJ9

59407,AY274119,AY

545919,AY545915

SARS coronavirus A022
NC_004718
vertebrates,human
1
Coronaviridae,Betacoronavirus,Severe acute
—
AY686863

respiratory syndrome-related coronavirus

SARS coronavirus AS
NC_004718
vertebrates,human
1
Coronaviridae,Betacoronavirus,Severe acute
—
AY427439

respiratory syndrome-related coronavirus

SARS coronavirus B039
NC_004718
vertebrates,human
1
Coronaviridae,Betacoronavirus,Severe acute
—
AY686864

respiratory syndrome-related coronavirus

SARS coronavirus BJQ1
NC_004718
vertebrates,human
1
Coronaviridae,Betacoronavirus,Severe acute
—
AY278488

respiratory syndrome-related coronavirus

SARS coronavirus BJQ2
NC_004718
vertebrates,human
1
Coronaviridae,Betacoronavirus,Severe acute
—
AY278487

respiratory syndrome-related coronavirus

SARS coronavirus BJQ3
NC_004718
vertebrates,human
1
Coronaviridae,Betacoronavirus,Severe acute
—
AY278490

respiratory syndrome-related coronavirus

SARS coronavirus BJQ4
NC_004718
vertebrates,human
1
Coronaviridae,Betacoronavirus,Severe acute
—
AY279354

respiratory syndrome-related coronavirus

SARS coronavirus BJ162
NC_004718
vertebrates,human
1
Coronaviridae,Betacoronavirus,Severe acute
—
AY864805

respiratory syndrome-related coronavirus

SARS coronavirus BJ182-
NC_004718
vertebrates,human
1
Coronaviridae,Betacoronavirus,Severe acute
—
EU371564

12

respiratory syndrome-related coronavirus

SARS coronavirus BJ182-4
NC_004718
vertebrates,human
1
Coronaviridae,Betacoronavirus,Severe acute
—
EU371562

respiratory syndrome-related coronavirus

SARS coronavirus BJ182-8
NC_004718
vertebrates,human
1
Coronaviridae,Betacoronavirus,Severe acute
—
EU371563

respiratory syndrome-related coronavirus

SARS coronavirus BJ182a
NC_004718
vertebrates,human
1
Coronaviridae,Betacoronavirus,Severe acute
—
EU371560

respiratory syndrome-related coronavirus

SARS coronavirus BJ182b
NC_004718
vertebrates,human
1
Coronaviridae,Betacoronavirus,Severe acute
—
EU371561

respiratory syndrome-related coronavirus

SARS coronavirus BJ202
NC_004718
vertebrates,human
1
Coronaviridae,Betacoronavirus,Severe acute
—
AY864806

respiratory syndrome-related coronavirus

SARS coronavirus CUHK-
NC_004718
vertebrates,human
1
Coronaviridae,Betacoronavirus,Severe acute
—
AY345986

AGO1

respiratory syndrome-related coronavirus

SARS coronavirus CUHK-
NC_004718
vertebrates,human
1
Coronaviridae,Betacoronavirus,Severe acute
—
AY345987

AGO2

respiratory syndrome-related coronavirus

SARS coronavirus CUHK-
NC_004718
vertebrates,human
1
Coronaviridae,Betacoronavirus,Severe acute
—
AY345988

AGO3

respiratory syndrome-related coronavirus

SARS coronavirus CUHK-
NC_004718
vertebrates,human
1
Coronaviridae,Betacoronavirus,Severe acute
—
AY282752

Sul 0

respiratory syndrome-related coronavirus

SARS coronavirus CUHK-
NC_004718
vertebrates,human
1
Coronaviridae,Betacoronavirus,Severe acute
—
AY278554

W1

respiratory syndrome-related coronavirus

SARS coronavirus ExoN1
NC_004718
vertebrates,human
33
Coronaviridae,Betacoronavirus,Severe acute
—
FJ882956,KF514395,

respiratory syndrome-related coronavirus

KF514410,FJ882950,

FJ882931,KF514412,

KF514406,KF514403,

FJ882955,KF514401,

KF514416,KF514391,

FJ882940,KF514417,

KF514420,KF514393,

KF514389,KF514405,

KF514390,KF514402,

FJ882926,KF514411,

FJ882928,FJ882930,

KF514414,FJ882941,

FJ882944,KF514407,

FJ882954,FJ882960,

JF292922,JX162087,

FJ882929

SARS coronavirus FRA
NC_004718
vertebrates,human
1
Coronaviridae,Betacoronavirus,Severe acute
—
AY310120

respiratory syndrome-related coronavirus

SARS coronavirus
NC_004718
vertebrates,human
2
Coronaviridae,Betacoronavirus,Severe acute
—
AB257344,AY291315

Frankfurt 1

respiratory syndrome-related coronavirus

SARS coronavirus GDQ1
NC_004718
vertebrates,human
1
Coronaviridae,Betacoronavirus,Severe acute
—
AY278489

respiratory syndrome-related coronavirus

SARS coronavirus GD69
NC_004718
vertebrates,human
1
Coronaviridae,Betacoronavirus,Severe acute
—
AY313906

respiratory syndrome-related coronavirus

SARS coronavirus GDH-
NC_004718
vertebrates,human
1
Coronaviridae,Betacoronavirus,Severe acute
—
DQ640652

BJHO1

respiratory syndrome-related coronavirus

SARS coronavirus GZ-A
NC_004718
vertebrates,human
1
Coronaviridae,Betacoronavirus,Severe acute
—
AY394977

respiratory syndrome-related coronavirus

SARS coronavirus GZ-B
NC_004718
vertebrates,human
1
Coronaviridae,Betacoronavirus,Severe acute
—
AY394978

respiratory syndrome-related coronavirus

SARS coronavirus GZ-C
NC_004718
vertebrates,human
1
Coronaviridae,Betacoronavirus,Severe acute
—
AY394979

respiratory syndrome-related coronavirus

SARS coronavirus GZ-D
NC_004718
vertebrates,human
1
Coronaviridae,Betacoronavirus,Severe acute
—
AY394980

respiratory syndrome-related coronavirus

SARS coronavirus GZO2
NC_004718
vertebrates,human
1
Coronaviridae,Betacoronavirus,Severe acute
—
AY390556

respiratory syndrome-related coronavirus

SARS coronavirus GZ0401
NC_004718
vertebrates,human
1
Coronaviridae,Betacoronavirus,Severe acute
—
AY568539

respiratory syndrome-related coronavirus

SARS coronavirus GZ0402
NC_004718
vertebrates,human
1
Coronaviridae,Betacoronavirus,Severe acute
—
AY613947

respiratory syndrome-related coronavirus

SARS coronavirus GZ50
NC_004718
vertebrates,human
1
Coronaviridae,Betacoronavirus,Severe acute
—
AY304495

respiratory syndrome-related coronavirus

SARS coronavirus
NC_004718
vertebrates,human
1
Coronaviridae,Betacoronavirus,Severe acute
—
AY515512

HC/SZ/61/03

respiratory syndrome-related coronavirus

SARS coronavirus
NC_004718
vertebrates,human
1
Coronaviridae,Betacoronavirus,Severe acute
—
AY394981

HGZ8L1-A

respiratory syndrome-related coronavirus

SARS coronavirus
NC_004718
vertebrates,human
1
Coronaviridae,Betacoronavirus,Severe acute
—
AY394982

HGZ8L1-B

respiratory syndrome-related coronavirus

SARS coronavirus HGZ8L2
NC_004718
vertebrates,human
1
Coronaviridae,Betacoronavirus,Severe acute
—
AY394993

respiratory syndrome-related coronavirus

SARS coronavirus HKU-
NC_004718
vertebrates,human
6
Coronaviridae,Betacoronavirus,Severe acute
—
JQ316196,JN854286,

39849

respiratory syndrome-related coronavirus

GU553365,AY278491

,GU553363,GU55336

4

SARS coronavirus HSR 1
NC_004718
vertebrates,human
1
Coronaviridae,Betacoronavirus,Severe acute
—
AY323977

respiratory syndrome-related coronavirus

SARS coronavirus HSZ-A
NC_004718
vertebrates,human
1
Coronaviridae,Betacoronavirus,Severe acute
—
AY394984

respiratory syndrome-related coronavirus

SARS coronavirus HSZ-Bb
NC_004718
vertebrates,human
1
Coronaviridae,Betacoronavirus,Severe acute
—
AY394985

respiratory syndrome-related coronavirus

SARS coronavirus HSZ-Bc
NC_004718
vertebrates,human
1
Coronaviridae,Betacoronavirus,Severe acute
—
AY394994

respiratory syndrome-related coronavirus

SARS coronavirus HSZ-Cb
NC_004718
vertebrates,human
1
Coronaviridae,Betacoronavirus,Severe acute
—
AY394986

respiratory syndrome-related coronavirus

SARS coronavirus HSZ-Cc
NC_004718
vertebrates,human
1
Coronaviridae,Betacoronavirus,Severe acute
—
AY394995

respiratory syndrome-related coronavirus

SARS coronavirus HSZ2-A
NC_004718
vertebrates,human
1
Coronaviridae,Betacoronavirus,Severe acute
—
AY394983

respiratory syndrome-related coronavirus

SARS coronavirus HZS2-
NC_004718
vertebrates,human
1
Coronaviridae,Betacoronavirus,Severe acute
—
AY395004

Bb

respiratory syndrome-related coronavirus

SARS coronavirus HZS2-C
NC_004718
vertebrates,human
1
Coronaviridae,Betacoronavirus,Severe acute
—
AY394992

respiratory syndrome-related coronavirus

SARS coronavirus HZS2-D
NC_004718
vertebrates,human
1
Coronaviridae,Betacoronavirus,Severe acute
—
AY394989

respiratory syndrome-related coronavirus

SARS coronavirus HZS2-E
NC_004718
vertebrates,human
1
Coronaviridae,Betacoronavirus,Severe acute
—
AY394990

respiratory syndrome-related coronavirus

SARS coronavirus HZS2-
NC_004718
vertebrates,human
1
Coronaviridae,Betacoronavirus,Severe acute
—
AY394987

Fb

respiratory syndrome-related coronavirus

SARS coronavirus HZS2-
NC_004718
vertebrates,human
1
Coronaviridae,Betacoronavirus,Severe acute
—
AY394991

Fc

respiratory syndrome-related coronavirus

SARS coronavirus JMD
NC_004718
vertebrates,human
1
Coronaviridae,Betacoronavirus,Severe acute
—
AY394988

respiratory syndrome-related coronavirus

SARS coronavirus LC1
NC_004718
vertebrates,human
1
Coronaviridae,Betacoronavirus,Severe acute
—
AY394998

respiratory syndrome-related coronavirus

SARS coronavirus LC2
NC_004718
vertebrates,human
1
Coronaviridae,Betacoronavirus,Severe acute
—
AY394999

respiratory syndrome-related coronavirus

SARS coronavirus LC3
NC_004718
vertebrates,human
1
Coronaviridae,Betacoronavirus,Severe acute
—
AY395000

respiratory syndrome-related coronavirus

SARS coronavirus LC4
NC_004718
vertebrates,human
1
Coronaviridae,Betacoronavirus,Severe acute
—
AY395001

respiratory syndrome-related coronavirus

SARS coronavirus LC5
NC_004718
vertebrates,human
1
Coronaviridae,Betacoronavirus,Severe acute
—
AY395002

respiratory syndrome-related coronavirus

SARS coronavirus LU-
NC_004718
vertebrates,human
1
Coronaviridae,Betacoronavirus,Severe acute
—
AY595412

2004

respiratory syndrome-related coronavirus

SARS coronavirus MA15
NC_004718
vertebrates,human
26
Coronaviridae,Betacoronavirus,Severe acute
—
FJ882958,JF292910,

respiratory syndrome-related coronavirus

FJ882961,JF292912,

FJ882948,JF292914,

JF292911,JF292908,

FJ882952,JF292915,

JF292918,HQ890546,

HQ890542,JF292917,

FJ882945,JF292913,

HQ890543,HQ89054

4,HQ890545,HQ8905

41,JF292916,JF2929

19,JF292909,JF2929

07,FJ882957,JF2929

20

SARS coronavirus MA15
NC_004718
vertebrates,human
26
Coronaviridae,Betacoronavirus,Severe acute
—
FJ882953,HQ890539,

ExoN1

respiratory syndrome-related coronavirus

JF292904,FJ882942,

HQ890527,HQ89052

9,HQ890538,HQ8905

36,HQ890540,JF2929

03,HQ890526,HQ890

537,FJ882959,FJ882

943,FJ882951,HQ890

530,HQ890535,JF292

902,HQ890532,HQ89

0533,HQ890531,HQ8

90534,HQ890528,JF2

92906,JF292905,FJ8

82962

SARS coronavirus NS-1
NC_004718
vertebrates,human
1
Coronaviridae,Betacoronavirus,Severe acute
—
AY508724

respiratory syndrome-related coronavirus

SARS coronavirus P2
NC_004718
vertebrates,human
1
Coronaviridae,Betacoronavirus,Severe acute
—
FJ882963

respiratory syndrome-related coronavirus

SARS coronavirus PC4-13
NC_004718
vertebrates,human
1
Coronaviridae,Betacoronavirus,Severe acute
—
AY613948

respiratory syndrome-related coronavirus

SARS coronavirus PC4-
NC_004718
vertebrates,human
1
Coronaviridae,Betacoronavirus,Severe acute
—
AY613949

136

respiratory syndrome-related coronavirus

SARS coronavirus PC4-
NC_004718
vertebrates,human
1
Coronaviridae,Betacoronavirus,Severe acute
—
AY613950

227

respiratory syndrome-related coronavirus

SARS coronavirus
NC_004718
vertebrates,human
1
Coronaviridae,Betacoronavirus,Severe acute
—
AY350750

PUMC01

respiratory syndrome-related coronavirus

SARS coronavirus
NC_004718
vertebrates,human
1
Coronaviridae,Betacoronavirus,Severe acute
—
AY357075

PUMCO2

respiratory syndrome-related coronavirus

SARS coronavirus
NC_004718
vertebrates,human
1
Coronaviridae,Betacoronavirus,Severe acute
—
AY357076

PUMC03

respiratory syndrome-related coronavirus

SARS coronavirus
NC_004718
vertebrates,human
1
Coronaviridae,Betacoronavirus,Severe acute
—
FJ588686

Rs_672/2006

respiratory syndrome-related coronavirus

SARS coronavirus
NC_004718
vertebrates,human
1
Coronaviridae,Betacoronavirus,Severe acute
—
AY463059

ShanghaiQXC1

respiratory syndrome-related coronavirus

SARS coronavirus
NC_004718
vertebrates,human
1
Coronaviridae,Betacoronavirus,Severe acute
—
AY463060

ShanghaiQXC2

respiratory syndrome-related coronavirus

SARS coronavirus Sin2500
NC_004718
vertebrates,human
1
Coronaviridae,Betacoronavirus,Severe acute
—
AY283794

respiratory syndrome-related coronavirus

SARS coronavirus Sin2677
NC_004718
vertebrates,human
1
Coronaviridae,Betacoronavirus,Severe acute
—
AY283795

respiratory syndrome-related coronavirus

SARS coronavirus Sin2679
NC_004718
vertebrates,human
1
Coronaviridae,Betacoronavirus,Severe acute
—
AY283796

respiratory syndrome-related coronavirus

SARS coronavirus Sin2748
NC_004718
vertebrates,human
1
Coronaviridae,Betacoronavirus,Severe acute
—
AY283797

respiratory syndrome-related coronavirus

SARS coronavirus Sin2774
NC_004718
vertebrates,human
1
Coronaviridae,Betacoronavirus,Severe acute
—
AY283798

respiratory syndrome-related coronavirus

SARS coronavirus Sin3408
NC_004718
vertebrates,human
1
Coronaviridae,Betacoronavirus,Severe acute
—
AY559083

respiratory syndrome-related coronavirus

SARS coronavirus
NC_004718
vertebrates,human
1
Coronaviridae,Betacoronavirus,Severe acute
—
AY559097

Sin3408L

respiratory syndrome-related coronavirus

SARS coronavirus
NC_004718
vertebrates,human
1
Coronaviridae,Betacoronavirus,Severe acute
—
AY559087

Sin3725V

respiratory syndrome-related coronavirus

SARS coronavirus
NC_004718
vertebrates,human
1
Coronaviridae,Betacoronavirus,Severe acute
—
AY559084

Sin3765V

respiratory syndrome-related coronavirus

SARS coronavirus Sin842
NC_004718
vertebrates,human
1
Coronaviridae,Betacoronavirus,Severe acute
—
AY559081

respiratory syndrome-related coronavirus

SARS coronavirus Sin845
NC_004718
vertebrates,human
1
Coronaviridae,Betacoronavirus,Severe acute
—
AY559093

respiratory syndrome-related coronavirus

SARS coronavirus Sin846
NC_004718
vertebrates,human
1
Coronaviridae,Betacoronavirus,Severe acute
—
AY559094

respiratory syndrome-related coronavirus

SARS coronavirus Sin847
NC_004718
vertebrates,human
1
Coronaviridae,Betacoronavirus,Severe acute
—
AY559095

respiratory syndrome-related coronavirus

SARS coronavirus Sin848
NC_004718
vertebrates,human
1
Coronaviridae,Betacoronavirus,Severe acute
—
AY559085

respiratory syndrome-related coronavirus

SARS coronavirus Sin849
NC_004718
vertebrates,human
1
Coronaviridae,Betacoronavirus,Severe acute
—
AY559086

respiratory syndrome-related coronavirus

SARS coronavirus Sin850
NC_004718
vertebrates,human
1
Coronaviridae,Betacoronavirus,Severe acute
—
AY559096

respiratory syndrome-related coronavirus

SARS coronavirus Sin852
NC_004718
vertebrates,human
1
Coronaviridae,Betacoronavirus,Severe acute
—
AY559082

respiratory syndrome-related coronavirus

SARS coronavirus SinP1
NC_004718
vertebrates,human
1
Coronaviridae,Betacoronavirus,Severe acute
—
AY559088

respiratory syndrome-related coronavirus

SARS coronavirus SinP2
NC_004718
vertebrates,human
1
Coronaviridae,Betacoronavirus,Severe acute
—
AY559089

respiratory syndrome-related coronavirus

SARS coronavirus SinP3
NC_004718
vertebrates,human
1
Coronaviridae,Betacoronavirus,Severe acute
—
AY559090

respiratory syndrome-related coronavirus

SARS coronavirus SinP4
NC_004718
vertebrates,human
1
Coronaviridae,Betacoronavirus,Severe acute
—
AY559091

respiratory syndrome-related coronavirus

SARS coronavirus SinP5
NC_004718
vertebrates,human
1
Coronaviridae,Betacoronavirus,Severe acute
—
AY559092

respiratory syndrome-related coronavirus

SARS coronavirus Sino1-
NC_004718
vertebrates,human
1
Coronaviridae,Betacoronavirus,Severe acute
—
AY485277

11

respiratory syndrome-related coronavirus

SARS coronavirus Sino3-
NC_004718
vertebrates,human
1
Coronaviridae,Betacoronavirus,Severe acute
—
AY485278

11

respiratory syndrome-related coronavirus

SARS coronavirus SoD
NC_004718
vertebrates,human
1
Coronaviridae,Betacoronavirus,Severe acute
—
AY461660

respiratory syndrome-related coronavirus

SARS coronavirus TJF
NC_004718
vertebrates,human
1
Coronaviridae,Betacoronavirus,Severe acute
—
AY654624

respiratory syndrome-related coronavirus

SARS coronavirus TW1
NC_004718
vertebrates,human
1
Coronaviridae,Betacoronavirus,Severe acute
—
AY291451

respiratory syndrome-related coronavirus

SARS coronavirus TW10
NC_004718
vertebrates,human
1
Coronaviridae,Betacoronavirus,Severe acute
—
AY502923

respiratory syndrome-related coronavirus

SARS coronavirus TW11
NC_004718
vertebrates,human
1
Coronaviridae,Betacoronavirus,Severe acute
—
AY502924

respiratory syndrome-related coronavirus

SARS coronavirus TW2
NC_004718
vertebrates,human
1
Coronaviridae,Betacoronavirus,Severe acute
—
AY502925

respiratory syndrome-related coronavirus

SARS coronavirus TW3
NC_004718
vertebrates,human
1
Coronaviridae,Betacoronavirus,Severe acute
—
AY502926

respiratory syndrome-related coronavirus

SARS coronavirus TW4
NC_004718
vertebrates,human
1
Coronaviridae,Betacoronavirus,Severe acute
—
AY502927

respiratory syndrome-related coronavirus

SARS coronavirus TW5
NC_004718
vertebrates,human
1
Coronaviridae,Betacoronavirus,Severe acute
—
AY502928

respiratory syndrome-related coronavirus

SARS coronavirus TW6
NC_004718
vertebrates,human
1
Coronaviridae,Betacoronavirus,Severe acute
—
AY502929

respiratory syndrome-related coronavirus

SARS coronavirus TW7
NC_004718
vertebrates,human
1
Coronaviridae,Betacoronavirus,Severe acute
—
AY502930

respiratory syndrome-related coronavirus

SARS coronavirus TW8
NC_004718
vertebrates,human
1
Coronaviridae,Betacoronavirus,Severe acute
—
AY502931

respiratory syndrome-related coronavirus

SARS coronavirus TW9
NC_004718
vertebrates,human
1
Coronaviridae,Betacoronavirus,Severe acute
—
AY502932

respiratory syndrome-related coronavirus

SARS coronavirus TWC
NC_004718
vertebrates,human
1
Coronaviridae,Betacoronavirus,Severe acute
—
AY321118

respiratory syndrome-related coronavirus

SARS coronavirus TWC2
NC_004718
vertebrates,human
1
Coronaviridae,Betacoronavirus,Severe acute
—
AY362698

respiratory syndrome-related coronavirus

SARS coronavirus TWC3
NC_004718
vertebrates,human
1
Coronaviridae,Betacoronavirus,Severe acute
—
AY362699

respiratory syndrome-related coronavirus

SARS coronavirus TWH
NC_004718
vertebrates,human
1
Coronaviridae,Betacoronavirus,Severe acute
—
AP006557

respiratory syndrome-related coronavirus

SARS coronavirus TWJ
NC_004718
vertebrates,human
1
Coronaviridae,Betacoronavirus,Severe acute
—
AP006558

respiratory syndrome-related coronavirus

SARS coronavirus TWK
NC_004718
vertebrates,human
1
Coronaviridae,Betacoronavirus,Severe acute
—
AP006559

respiratory syndrome-related coronavirus

SARS coronavirus TWS
NC_004718
vertebrates,human
1
Coronaviridae,Betacoronavirus,Severe acute
—
AP006560

respiratory syndrome-related coronavirus

SARS coronavirus TWY
NC_004718
vertebrates,human
1
Coronaviridae,Betacoronavirus,Severe acute
—
AP006561

respiratory syndrome-related coronavirus

SARS coronavirus Taiwan
NC_004718
vertebrates,human
1
Coronaviridae,Betacoronavirus,Severe acute
—
AY338174

TC1

respiratory syndrome-related coronavirus

SARS coronavirus Taiwan
NC_004718
vertebrates,human
1
Coronaviridae,Betacoronavirus,Severe acute
—
AY338175

TC2

respiratory syndrome-related coronavirus

SARS coronavirus Taiwan
NC_004718
vertebrates,human
1
Coronaviridae,Betacoronavirus,Severe acute
—
AY348314

TC3

respiratory syndrome-related coronavirus

SARS coronavirus Urbani
NC_004718
vertebrates,human
1
Coronaviridae,Betacoronavirus,Severe acute
—
AY278741

respiratory syndrome-related coronavirus

SARS coronavirus W H20
NC_004718
vertebrates,human
1
Coronaviridae,Betacoronavirus,Severe acute
—
AY772062

respiratory syndrome-related coronavirus

SARS coronavirus W HU
NC_004718
vertebrates,human
1
Coronaviridae,Betacoronavirus,Severe acute
—
AY394850

respiratory syndrome-related coronavirus

SARS coronavirus ZJO1
NC_004718
vertebrates,human
1
Coronaviridae,Betacoronavirus,Severe acute
—
AY297028

respiratory syndrome-related coronavirus

SARS coronavirus ZJO2
NC_004718
vertebrates,human
1
Coronaviridae,Betacoronavirus,Severe acute
—
EU371559

respiratory syndrome-related coronavirus

SARS coronavirus ZJO301
NC_004718
vertebrates,human
1
Coronaviridae,Betacoronavirus,Severe acute
—
DQ182595

respiratory syndrome-related coronavirus

SARS coronavirus ZMY 1
NC_004718
vertebrates,human
1
Coronaviridae,Betacoronavirus,Severe acute
—
AY351680

respiratory syndrome-related coronavirus

SARS coronavirus ZS-A
NC_004718
vertebrates,human
1
Coronaviridae,Betacoronavirus,Severe acute
—
AY394997

respiratory syndrome-related coronavirus

SARS coronavirus ZS-B
NC_004718
vertebrates,human
1
Coronaviridae,Betacoronavirus,Severe acute
—
AY394996

respiratory syndrome-related coronavirus

SARS coronavirus ZS-C
NC_004718
vertebrates,human
1
Coronaviridae,Betacoronavirus,Severe acute
—
AY395003

respiratory syndrome-related coronavirus

SARS coronavirus civet010
NC_004718
vertebrates,human
1
Coronaviridae,Betacoronavirus,Severe acute
—
AY572035

respiratory syndrome-related coronavirus

SARS coronavirus civet020
NC_004718
vertebrates,human
1
Coronaviridae,Betacoronavirus,Severe acute
—
AY572038

respiratory syndrome-related coronavirus

SARS coronavirus wtic-MB
NC_004718
vertebrates,human
31
Coronaviridae,Betacoronavirus,Severe acute
—
KF514421,FJ882932,

respiratory syndrome-related coronavirus

FJ882937,KF514413,

KF514400,KF514392,

KF514399,JF292921,

KF514415,FJ882927,

KF514398,KF514408,

KF514419,FJ882938,

KF514423,FJ882934,

KF514418,FJ882939,

KF514396,KF514397,

FJ882936,FJ882949,

FJ882946,FJ882933,

FJ882947,KF514394,

KF514409,KF514422,

KF514388,FJ882935,

KF514404

Sabia virus
NC_006313
vertebrates,human
3
Arenaviridae,Arenavirus,Sabia virus
seg. L
JN801475,AY358026,

AY216506

Sabia virus
NC_006317
vertebrates,human
2
Arenaviridae,Arenavirus,Sabia virus
seg. S
U41071,JN801474

Sapovirus Chanthaburi-
NC_000940
vertebrates,human
1
Caliciviridae,Sapovirus,Sapporo virus
—
AY646854

74/Thailand
,NC_01062

4,NC_0062

69,NC_006

554

Sapovirus
NC_000940
vertebrates,human
1
Caliciviridae,Sapovirus,Sapporo virus
—
DQ058829

Ehime1107/2002/JP
,NC_01062

4,NC_0062

69,NC_006

554

Sapovirus
NC_000940
vertebrates,human
1
Caliciviridae,Sapovirus,Sapporo virus
—
DQ125333

Hu/Angelholm/SW278/200
,NC_01062

4/SE
4,NC_0062

69,NC_006

554

Sapovirus
NC_000940
vertebrates,human
1
Caliciviridae,Sapovirus,Sapporo virus
—
DQ125334

Hu/Angelholm/5W314/200
,NC_01062

4/SE
4,NC_0062

69,NC_006

554

Sapovirus
NC_000940
vertebrates,human
1
Caliciviridae,Sapovirus,Sapporo virus
—
AJ249939

Hu/Bristo1/1998/UK
,NC_01062

4,NC_0062

69,NC_006

554

Sapovirus
NC_000940
vertebrates,human
1
Caliciviridae,Sapovirus,Sapporo virus
—
AJ786349

Hu/Chiba/000671/1999/JP
,NC_01062

4,NC_0062

69,NC_006

554

Sapovirus
NC_000940
vertebrates,human
1
Caliciviridae,Sapovirus,Sapporo virus
—
DQ366346

Hu/Ehime1596/1999/JP
, NC_01062

4,NC_0062

69,NC_006

554

Sapovirus
NC_000940
vertebrates,human
1
Caliciviridae,Sapovirus,Sapporo virus
—
DQ366344

Hu/Ehime475/2004/JP
,NC_01062

4,NC_0062

69,NC_006

554

Sapovirus
NC_000940
vertebrates,human
1
Caliciviridae,Sapovirus,Sapporo virus
—
DQ366345

Hu/Ehime643/March
,NC_01062

2000/JP
4,NC_0062

69,NC_006

554

Sapovirus Hu/G I,2/BR-
NC_000940
vertebrates,human
1
Caliciviridae,Sapovirus,Sapporo virus
—
AB614356

DF01/BRA/2009
,NC_01062

4,NC_0062

69,NC_006

554

Sapovirus
NC_000940
vertebrates,human
1
Caliciviridae,Sapovirus,Sapporo virus
—
HM002617

Hu/GI/Sapporo/MT-
,NC_01062

2010/1982
4,NC_0062

69,NC_006

554

Sapovirus Mc114
NC_000940
vertebrates,human
1
Caliciviridae,Sapovirus,Sapporo virus
—
AY237422

,NC_01062

4,NC_0062

69,NC_006

554

Sapovirus Mc2
NC_000940
vertebrates,human
1
Caliciviridae,Sapovirus,Sapporo virus
—
AY237419

,NC_01062

4,NC_0062

69,NC_006

554

Sapovirus N21
NC_000940
vertebrates,human
1
Caliciviridae,Sapovirus,Sapporo virus
—
AY237423

,NC_01062

4,NC_0062

69,NC_006

554

Sapovirus NongKhai-
NC_000940
vertebrates,human
1
Caliciviridae,Sapovirus,Sapporo virus
—
AY646856

24/Thailand
,NC_01062

4,NC_0062

69,NC_006

554

Sapovirus NongKhai-
NC_000940
vertebrates,human
1
Caliciviridae,Sapovirus,Sapporo virus
—
AY646853

50/Thailand
,NC_01062

4,NC_0062

69,NC_006

554

Sapovirus SaKaeo-
NC_000940
vertebrates,human
1
Caliciviridae,Sapovirus,Sapporo virus
—
AY646855

15/Thailand
,NC_01062

4,NC_0062

69,NC_006

554

Sapovirus
NC_000940
vertebrates,human
1
Caliciviridae,Sapovirus,Sapporo virus
—
KF204570

pig/Gansu/CH430/2012/CH
,NC_01062

N
4,NC_0062

69,NC_006

554

Sapovirus
NC_000940
vertebrates,human
1
Caliciviridae,Sapovirus,Sapporo virus
—
FJ387164

pig/sav1/2008/CHN
,NC_01062

4,NC_0062

69,NC_006

554

Sapporo rat virus
NC_005236
vertebrates,human
1
Bunyaviridae,Hantavirus,Seoul virus
seg. S
M34881

Sapporo rat virus
NC_005237
vertebrates,human
1
Bunyaviridae,Hantavirus,Seoul virus
seg. M
M34882

Sapporo virus-Manchester
NC_000940
vertebrates,human
1
Caliciviridae,Sapovirus,Sapporo virus
—
X86560

,NC_01062

4,NC_0062

69,NC_006

554

Seal anellovirus
NC_015212
vertebrates,human
1
Anelloviridae,Seal anellovirus
—
HQ287751

TFFN/USA/2006

TFFN/USA/2006

Sendai virus
NC_001552
vertebrates,human
20
Paramyxoviridae,Respirovirus,Sendai virus
—
AB855653,AB005795

,AB005796,AB06518

7,M69046,M30204,D

0219803,AB195967,

AB855655,EF679198,

AB275417,AB065188

,AB855654,AB03965

8,AB195968,AB2754

16,M30203,AB06518

9,AB065186,M30202

Seoul virus
NC_005236
vertebrates,human
13
Bunyaviridae,Hantavirus,Seoul virus
seg. S
AF406965,KC626089

,JX853575,JX879769,

JQ665912,HQ611980

,AY006465,EF192308

,AY766368,AY27379

1,JQ898106,JN37755

3,AY750171

Seoul virus
NC_005237
vertebrates,human
11
Bunyaviridae,Hantavirus,Seoul virus
seg. M
D17593,D17592,547

716,JN377554,JQ665

888,JX853576,D1759

4,DQ159911,JX8797

68,AB027521,EF1172

48

Seoul virus
NC_005238
vertebrates,human
5
Bunyaviridae,Hantavirus,Seoul virus
seg. L
JX879770,EF190551,

X56492,JX853574,EF

581094

Seoul virus 5CSG
NC_005237
vertebrates,human
1
Bunyaviridae,Hantavirus,Seoul virus
seg. M
AB618130

Seoul virus B-1
NC_005237
vertebrates,human
1
Bunyaviridae,Hantavirus,Seoul virus
seg. M
X53861

Seoul virus BjHDQ1
NC_005236
vertebrates,human
1
Bunyaviridae,Hantavirus,Seoul virus
seg. S
AY627049

Seoul virus BjHDQ1
NC_005237
vertebrates,human
1
Bunyaviridae,Hantavirus,Seoul virus
seg. M
DQ133505

Seoul virus CSG5
NC_005236
vertebrates,human
1
Bunyaviridae,Hantavirus,Seoul virus
seg. S
AB618112

Seoul virus Gou3-e5
NC_005237
vertebrates,human
1
Bunyaviridae,Hantavirus,Seoul virus
seg. M
AF288650

Seoul virus Hb8610
NC_005236
vertebrates,human
1
Bunyaviridae,Hantavirus,Seoul virus
seg. S
AF288643

Seoul virus K24-e7
NC_005236
vertebrates,human
1
Bunyaviridae,Hantavirus,Seoul virus
seg. S
AF288653

Seoul virus K24-e7
NC_005237
vertebrates,human
1
Bunyaviridae,Hantavirus,Seoul virus
seg. M
AF288652

Seoul virus K24-v2
NC_005236
vertebrates,human
1
Bunyaviridae,Hantavirus,Seoul virus
seg. S
AF288655

Seoul virus K24-v2
NC_005237
vertebrates,human
1
Bunyaviridae,Hantavirus,Seoul virus
seg. M
AF288654

Seoulvirus Gou3
NC_005236
vertebrates,human
1
Bunyaviridae,Hantavirus,Seoul virus
seg. S
AF184988

Seoulvirus Gou3
NC_005237
vertebrates,human
1
Bunyaviridae,Hantavirus,Seoul virus
seg. M
AF145977

Seoulvirus HB55
NC_005237
vertebrates,human
1
Bunyaviridae,Hantavirus,Seoul virus
seg. M
AF035832

Seoulvirus IR461
NC_005236
vertebrates,human
1
Bunyaviridae,Hantavirus,Seoul virus
seg. S
AF329388

Seoulvirus IR461
NC_005237
vertebrates,human
1
Bunyaviridae,Hantavirus,Seoul virus
seg. M
AF458104

Seoulvirus L99
NC_005236
vertebrates,human
1
Bunyaviridae,Hantavirus,Seoul virus
seg. S
AF288299

Seoulvirus L99
NC_005237
vertebrates,human
2
Bunyaviridae,Hantavirus,Seoul virus
seg. M
AF288298,AF035833

Seoulvirus L99
NC_005238
vertebrates,human
1
Bunyaviridae,Hantavirus,Seoul virus
seg. L
AF288297

Seoulvirus R22
NC_005236
vertebrates,human
2
Bunyaviridae,Hantavirus,Seoul virus
seg. S
AF488707,AF288295

Seoulvirus tchoupitoulas
NC_005236
vertebrates,human
1
Bunyaviridae,Hantavirus,Seoul virus
seg. S
AF329389

Simian Agent 10
NC_001796
vertebrates,human
1
Paramyxoviridae,Respirovirus,Human
—
HM583801

parainfluenza virus 3

Simian adenovirus 27,1
NC_011202
vertebrates,human
1
Adenoviridae,Mastadenovirus,Human
—
FJQ25909

adenovirus B

Simian adenovirus 27,1
NC_011203
vertebrates,human
1
Adenoviridae,Mastadenovirus,Human
—
FJQ25909

adenovirus B

Simian adenovirus 27,2
NC_011202
vertebrates,human
1
Adenoviridae,Mastadenovirus,Human
—
FJQ25928

adenovirus B

Simian adenovirus 27,2
NC_011203
vertebrates,human
1
Adenoviridae,Mastadenovirus,Human
—
FJQ25928

adenovirus B

Simian adenovirus 28,1
NC_011202
vertebrates,human
1
Adenoviridae,Mastadenovirus,Human
—
FJQ25914

adenovirus B

Simian adenovirus 28,1
NC_011203
vertebrates,human
1
Adenoviridae,Mastadenovirus,Human
—
FJQ25914

adenovirus B

Simian adenovirus 28,2
NC_011202
vertebrates,human
1
Adenoviridae,Mastadenovirus,Human
—
FJQ25915

adenovirus B

Simian adenovirus 28,2
NC_011203
vertebrates,human
1
Adenoviridae,Mastadenovirus,Human
—
FJQ25915

adenovirus B

Simian adenovirus 29
NC_011202
vertebrates,human
1
Adenoviridae,Mastadenovirus,Human
—
FJQ25916

adenovirus B

Simian adenovirus 29
NC_011203
vertebrates,human
1
Adenoviridae,Mastadenovirus,Human
—
FJQ25916

adenovirus B

Simian adenovirus 31,1
NC_001405
vertebrates,human
1
Adenoviridae,Mastadenovirus,Human
—
FJQ25906

adenovirus C

Simian adenovirus 31,2
NC_001405
vertebrates,human
1
Adenoviridae,Mastadenovirus,Human
—
FJQ25904

adenovirus C

Simian adenovirus 32
NC_011202
vertebrates,human
1
Adenoviridae,Mastadenovirus,Human
—
FJQ25911

adenovirus B

Simian adenovirus 32
NC_011203
vertebrates,human
1
Adenoviridae,Mastadenovirus,Human
—
FJQ25911

adenovirus B

Simian adenovirus 33
NC_011202
vertebrates,human
1
Adenoviridae,Mastadenovirus,Human
—
FJQ25908

adenovirus B

Simian adenovirus 33
NC_011203
vertebrates,human
1
Adenoviridae,Mastadenovirus,Human
—
FJQ25908

adenovirus B

Simian adenovirus 34
NC_001405
vertebrates,human
1
Adenoviridae,Mastadenovirus,Human
—
FJQ25905

adenovirus C

Simian adenovirus 35,1
NC_011202
vertebrates,human
1
Adenoviridae,Mastadenovirus,Human
—
FJQ25912

adenovirus B

Simian adenovirus 35,1
NC_011203
vertebrates,human
1
Adenoviridae,Mastadenovirus,Human
—
FJQ25912

adenovirus B

Simian adenovirus 35,2
NC_011202
vertebrates,human
1
Adenoviridae,Mastadenovirus,Human
—
FJQ25910

adenovirus B

Simian adenovirus 35,2
NC_011203
vertebrates,human
1
Adenoviridae,Mastadenovirus,Human
—
FJQ25910

adenovirus B

Simian adenovirus 40,1
NC_001405
vertebrates,human
1
Adenoviridae,Mastadenovirus,Human
—
FJQ25907

adenovirus C

Simian adenovirus 40,2
NC_001405
vertebrates,human
1
Adenoviridae,Mastadenovirus,Human
—
FJQ25926

adenovirus C

Simian adenovirus 41,1
NC_011202
vertebrates,human
1
Adenoviridae,Mastadenovirus,Human
—
FJQ25913

adenovirus B

Simian adenovirus 41,1
NC_011203
vertebrates,human
1
Adenoviridae,Mastadenovirus,Human
—
FJQ25913

adenovirus B

Simian adenovirus 41,2
NC_011202
vertebrates,human
1
Adenoviridae,Mastadenovirus,Human
—
FJQ25927

adenovirus B

Simian adenovirus 41,2
NC_011203
vertebrates,human
1
Adenoviridae,Mastadenovirus,Human
—
FJQ25927

adenovirus B

Simian adenovirus 42,1
NC_001405
vertebrates,human
1
Adenoviridae,Mastadenovirus,Human
—
FJQ25903

adenovirus C

Simian adenovirus 42,2
NC_001405
vertebrates,human
1
Adenoviridae,Mastadenovirus,Human
—
FJQ25902

adenovirus C

Simian adenovirus 42,3
NC_001405
vertebrates,human
1
Adenoviridae,Mastadenovirus,Human
—
FJQ25925

adenovirus C

Simian adenovirus 43
NC_001405
vertebrates,human
1
Adenoviridae,Mastadenovirus,Human
—
FJQ25900

adenovirus C

Simian adenovirus 44
NC_001405
vertebrates,human
1
Adenoviridae,Mastadenovirus,Human
—
FJQ25899

adenovirus C

Simian adenovirus 45
NC_001405
vertebrates,human
1
Adenoviridae,Mastadenovirus,Human
—
FJQ25901

adenovirus C

Simian adenovirus 46
NC_011202
vertebrates,human
1
Adenoviridae,Mastadenovirus,Human
—
FJQ25930

adenovirus B

Simian adenovirus 46
NC_011203
vertebrates,human
1
Adenoviridae,Mastadenovirus,Human
—
FJQ25930

adenovirus B

Simian adenovirus 47
NC_011202
vertebrates,human
1
Adenoviridae,Mastadenovirus,Human
—
FJQ25929

adenovirus B

Simian adenovirus 47
NC_011203
vertebrates,human
1
Adenoviridae,Mastadenovirus,Human
—
FJQ25929

adenovirus B

Simian agents
NC_001472
vertebrates,human
1
Picornaviridae,Enterovirus,Enterovirus B
—
AF326751

Simian enterovirus 19
NC_001612
vertebrates,human
1
Picornaviridae,Enterovirus,Enterovirus A
—
AF326754

Simian enterovirus 43
NC_001612
vertebrates,human
1
Picornaviridae,Enterovirus,Enterovirus A
—
AF326761

Simian enterovirus 46
NC_001612
vertebrates,human
2
Picornaviridae,Enterovirus,Enterovirus A
—
EF667343,AF326764

Simian rotavirus
NC_011500
vertebrates,human
6
Reoviridae,Rotavirus,Rotavirus A
seg. 5
AF290884,AF290883,

AF290882,Z32535,AF

290881,FJ422135

Simian rotavirus
NC_011501
vertebrates,human
2
Reoviridae,Rotavirus,Rotavirus A
seg. 7
GU550506,FJ422137

Simian rotavirus
NC_011502
vertebrates,human
2
Reoviridae,Rotavirus,Rotavirus A
seg. 8
X81426,FJ422138

Simian rotavirus
NC_011503
vertebrates,human
4
Reoviridae,Rotavirus,Rotavirus A
seg. 9
X66158,V01546,V011

90,FJ422139

Simian rotavirus
NC_011504
vertebrates,human
2
Reoviridae,Rotavirus,Rotavirus A
seg.
FJ422140,L41247

10

Simian rotavirus
NC_011505
vertebrates,human
4
Reoviridae,Rotavirus,Rotavirus A
seg.
AF306493,XQ7831,FJ

11
422141,M28347

Simian rotavirus
NC_011506
vertebrates,human
3
Reoviridae,Rotavirus,Rotavirus A
seg. 2
AF474406,L33364,FJ

422132

Simian rotavirus
NC_011507
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 1
FJ422131

Simian rotavirus
NC_011508
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 3
FJ422133

Simian rotavirus
NC_011509
vertebrates,human
5
Reoviridae,Rotavirus,Rotavirus A
seg. 6
L15384,FJ422136,L3

3365,XQ0421,M27824

Simian rotavirus
NC_011510
vertebrates,human
5
Reoviridae,Rotavirus,Rotavirus A
seg. 4
M23188,FJ422134,D

4

16345,D16346,X1420

Simian rotavirus A strain
NC_011506
vertebrates,human
2
Reoviridae,Rotavirus,Rotavirus A
seg. 2
EF583007,EU636925

RRV

Simian rotavirus A strain
NC_011507
vertebrates,human
2
Reoviridae,Rotavirus,Rotavirus A
seg. 1
EU636924,EF583006

RRV

Simian rotavirus A strain
NC_011508
vertebrates,human
2
Reoviridae,Rotavirus,Rotavirus A
seg. 3
EU636926,EF583008

RRV

Simian rotavirus A strain
NC_011509
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 6
EF583009

RRV

Simian rotavirus A strain
NC_011500
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 5
FJ816612

TUCH

Simian rotavirus A strain
NC_011501
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 7
FJ816613

TUCH

Simian rotavirus A strain
NC_011502
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 8
FJ816614

TUCH

Simian rotavirus A strain
NC_011503
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 9
FJ816615

TUCH

Simian rotavirus A strain
NC_011504
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg.
FJ816616

TUCH

10

Simian rotavirus A strain
NC_011505
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg.
FJ816617

TUCH

11

Simian rotavirus A strain
NC_011506
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 2
EF583011

TUCH

Simian rotavirus A strain
NC_011507
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 1
EF583010

TUCH

Simian rotavirus A strain
NC_011508
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 3
EF583012

TUCH

Simian rotavirus A strain
NC_011509
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 6
EF583013

TUCH

Simian rotavirus A strain
NC_011510
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 4
FJ816611

TUCH

Simian rotavirus A/SA11
NC_011500
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 5
X14914

Simian rotavirus A/SA11
NC_011501
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 7
JQ2353

Simian rotavirus A/SA11
NC_011502
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 8
XQ0355

Simian rotavirus A/SA11
NC_011504
vertebrates,human
2
Reoviridae,Rotavirus,Rotavirus A
seg.
AF087678,K01138

10

Simian rotavirus A/SA11
NC_011506
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 2
X16831

Simian rotavirus A/SA11
NC_011507
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 1
X16830

Simian rotavirus A/SA11
NC_011508
vertebrates,human
2
Reoviridae,Rotavirus,Rotavirus A
seg. 3
X16062,X16387

Simian rotavirus A/SA11
NC_011509
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 6
AY187029

Simian rotavirus A/SA11
NC_011510
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 4
Y00336

Simian rotavirus A/SA11-
NC_011502
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 8
AY065843

C14

Simian rotavirus A/SA11-L2
NC_011502
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 8
EF460843

Simian virus 40
NC_001669
vertebrates,human
35
Polyomaviridae,Polyomavirus,Simian virus 40
seg. 8
EF579662,EF579804,

AY271816,EF579661,

FN812745,AF155358,

AF156105,AY120890,

AF345345,JQ2400,AF

316141,EF579665,AF

345344,EF579663,AF

316140,EF579664,AF

156107,EF579659,AY

538779,EF579660,AF

180737,EF579667,AY

271817,AF156108,AF

332562,DQ660375,E

F579658,EF579666,A

F332699,DQ218418,

EF579803,AF155359,

AF316139,AF168994,

AF038616

Simian virus 41
NC_006428
vertebrates,human
1
Paramyxoviridae,Rubulavirus,Simian virus 41
—
X64275

Sin Nombre virus
NC_005215
vertebrates,human
6
Bunyaviridae,Hantavirus,Sin Nombre virus
seg. M
JQ690283,JQ690280,

JQ690279,JQ690284,

L25783, L37903

Sin Nombre virus
NC_005216
vertebrates,human
8
Bunyaviridae,Hantavirus,Sin Nombre virus
seg. S
L25784,JQ690281,JQ

690277,JQ690282,JQ

690278,JQ690276,AF

281851,L37904

Sin Nombre virus
NC_005217
vertebrates,human
2
Bunyaviridae,Hantavirus,Sin Nombre virus
seg. L
L37902,L37901

Small anellovirus 2
NC_007014
vertebrates,human
1
Anelloviridae,Small anellovirus
—
AY622909

,NC_00701

3

Snow Mountain virus
NC_001959
vertebrates,human
1
Caliciviridae,Norovirus,Norwalk virus
—
AY134748

Southampton virus
NC_001959
vertebrates,human
1
Caliciviridae,Norovirus,Norwalk virus
—
L07418

Sudan ebolavirus
NC_006432
vertebrates,human
9
Filoviridae,Ebolavirus,Sudan ebolavirus
—
KC545391,EU338380

,KC589025,KC24278

3,FJ968794,KC54539

0,AY729654,KC5453

89,KC545392

Sudan ebolavirus-
NC_006432
vertebrates,human
1
Filoviridae,Ebolavirus,Sudan ebolavirus
—
JN638998

Nakisamata

Swine hepatitis E virus
NC_001434
vertebrates,human
26
Hepeviridae,Hepevirus,Hepatitis E virus
—
GU361892,FJ998008,

GU188851,AB481228

,EU723514,AY59419

9,GU119961,FJ61023

2,GU119960,KF1763

51,AB097811,AB073

912,AB481227,EU72

3512,EU676172,EU7

23515,AY115488,EU

723513,AF082843,D

0279091,FJ426403,F

J426404,AB481229,J

X855794,EU723516,

AB481226

Swine vesicular disease
NC_001472
vertebrates,human
4
Picornaviridae,Enterovirus,Enterovirus B
—
AY429470,AF268065,

virus

D16364,X54521

Swine vesicular disease
NC_001472
vertebrates,human
1
Picornaviridae,Enterovirus,Enterovirus B
—
DQ0435

virus (STRAIN H/3 '76)

TT virus 51e1931
NC_015783
vertebrates,human
1
Anelloviridae,Torque teno virus
—
AM712003

TT virus 51e1932
NC_015783
vertebrates,human
1
Anelloviridae,Torque teno virus
—
AM712004

TT virus 51e1957
NC_015783
vertebrates,human
1
Anelloviridae,Torque teno virus
—
AM711976

TT virus 51e2057
NC_015783
vertebrates,human
1
Anelloviridae,Torque teno virus
—
AM712030

TT virus 51e2058
NC_015783
vertebrates,human
1
Anelloviridae,Torque teno virus
—
AM712031

TT virus 51e2061
NC_015783
vertebrates,human
1
Anelloviridae,Torque teno virus
—
AM712033

TT virus 51e2065
NC_015783
vertebrates,human
1
Anelloviridae,Torque teno virus
—
AM712034

TT virus 51e2072
NC_015783
vertebrates,human
1
Anelloviridae,Torque teno virus
—
AM712032

TTV-Iike mini virus
NC_020498
vertebrates,human
8
Anelloviridae,TTV-Iike mini virus
—
KF764702,JX134046,

AB026930,JX134044,

AB038628,AB038626

,KF764701,JX134045

Tacaribe virus
NC_004292
vertebrates,human
1
Arenaviridae,Arenavirus,Tacaribe virus
seg. L
JQ4340

Tacaribe virus
NC_004293
vertebrates,human
1
Arenaviridae,Arenavirus,Tacaribe virus
seg. S
M20304

Tamiami virus
NC_010701
vertebrates,human
3
Arenaviridae,Arenavirus,Tamiami virus
seg. S
AF512828,AF485263,

EU486821

Tamiami virus
NC_010702
vertebrates,human
2
Arenaviridae,Arenavirus,Tamiami virus
seg. L
AY924393,EU627614

Thottapalayam virus
NC_010704
vertebrates,human
1
Bunyaviridae,Hantavirus,Thottapalayam virus
seg. S
AY526097

Thottapalayam virus
NC_010707
vertebrates,human
2
Bunyaviridae,Hantavirus,Thottapalayam virus
seg. L
EU001330,DQ825770

Thottapalayam virus
NC_010708
vertebrates,human
2
Bunyaviridae,Hantavirus,Thottapalayam virus
seg. M
EU001329,DQ825771

Tioman virus
NC_004074
vertebrates,human
1
Paramyxoviridae,Rubulavirus,Tioman virus
—
AF298895

Torque teno canis virus
NC_014071
vertebrates,human
3
Anelloviridae,Thetatorquevirus,Torque teno
—
AB076002,GU951508

canis virus

,HM855265

Torque teno douroucouli
NC_014087
vertebrates,human
1
Anelloviridae,Zetatorquevirus,Torque teno
—
AB041961

virus

douroucouli virus

Torque teno felis virus
NC_014072
vertebrates,human
3
Anelloviridae,Etatorquevirus,Torque teno felis
—
HM142589,HM14258

virus

8,AB076003

Torque teno midi virus 1
NC_009225
vertebrates,human
2
Anelloviridae,Gammatorquevirus,Torque teno
—
AB290918,AB290917

midi virus 1

Torque teno midi virus 2
NC_014093
vertebrates,human
1
Anelloviridae,Gammatorquevirus,Torque teno
—
AB290919

midi virus 2

Torque teno mini virus 1
NC_014097
vertebrates,human
1
Anelloviridae,Betatorquevirus,Torque teno
—
AB026931

mini virus 1

Torque teno mini virus 2
NC_014086
vertebrates,human
1
Anelloviridae,Betatorquevirus,Torque teno
—
AB038629

mini virus 2

Torque teno mini virus 3
NC_014088
vertebrates,human
1
Anelloviridae,Betatorquevirus,Torque teno
—
AB038630

mini virus 3

Torque teno mini virus 4
NC_014090
vertebrates,human
1
Anelloviridae,Betatorquevirus,Torque teno
—
AB041963

mini virus 4

Torque teno mini virus 5
NC_014089
vertebrates,human
1
Anelloviridae,Betatorquevirus,Torque teno
—
AB041962

mini virus 5

Torque teno mini virus 6
NC_014095
vertebrates,human
1
Anelloviridae,Betatorquevirus,Torque teno
—
AB026929

mini virus 6

Torque teno mini virus 7
NC_014082
vertebrates,human
1
Anelloviridae,Betatorquevirus,Torque teno
—
AB038627

mini virus 7

Torque teno mini virus 8
NC_014068
vertebrates,human
1
Anelloviridae,Betatorquevirus,Torque teno
—
AF291073

mini virus 8

Torque teno mini virus 9
NC_002195
vertebrates,human
2
Anelloviridae,Betatorquevirus,Torque teno
—
AB038631,AB038625

mini virus 9

Torque teno sus virus 1
NC_014070
vertebrates,human
13
Anelloviridae,lotatorquevirus,Torque teno sus
—
HM633256,AB076001

virus 1a

,JF937662,JF937660,

JF937661,HM633251

,JN688927,AY823990

,JF694117,HM63324

9,HM633245,HM6332

43,JF694116

Torque teno sus virus la
NC_014070
vertebrates,human
3
Anelloviridae,lotatorquevirus,Torque teno sus
—
JX535326,JX535327,

virus la

JQ933527

Torque teno sus virus k2
NC_014092
vertebrates,human
1
Anelloviridae,Kappatorquevirus,Torque teno
—
AY823991

sus virus k2

Torque teno sus virus k2b
NC_014092
vertebrates,human
3
Anelloviridae,Kappatorquevirus,Torque teno
—
JQ406846,JQ406844,

sus virus k2

JQ406845

Torque teno tamarin virus
NC_014085
vertebrates,human
1
Anelloviridae,Epsilontorquevirus,Torque teno
—
AB041960

tamarin virus

Torque teno virus
NC_014070
vertebrates,human
4
Anelloviridae,lotatorquevirus,Torque teno sus
—
GQ120664,GU45638

virus 1a

3,GU456384,GU1880

45

Torque teno virus
NC_015783
vertebrates,human
114
Anelloviridae,Torque teno virus
—
AF351132,FR751478,

AF247138,FR751507,

FR751483,FR751485

,FR751472,AJ620233

,FR751470,AB02866

9,AB064603,FR7515

06,AF122915,FR7514

71,AB064597,FR751

463,AJ620216,FR751

495,AY823989,FR84

8325,AB054648,AF12

2916,AJ620228,AJ62

0212,FR848327,FR7

51479,FR751500,AF1

22914,AJ620224,FR7

51477,AJ620235,AB0

64599,FR751465,FR

751491,FR848323,F

R751502,AB017610,

FR751504,AB064606

,AJ620218,FR751493

,AJ620227,AF122917

,AJ620231,FR751480

,DQ003344,FR75147

5,AY823988,FR7514

69,AJ620219,AB0386

19,AF116842,FR7514

68,FR751490,FR751

501,AB064602,AJ620

221,AF298585,AJ620

226,AB038620,FR75

1503,FR751509,FR7

51481,AJ620214,FR7

51497,DQ003341,DO

003343,FR751476,AJ

620232,AJ620230,FR

751487,AJ620229,AB

064600,AF247137,AF

122921,FR751492,AF

122918,FR751508,AF

122920,FJ426280,FR

751484,AF122913,FR

751511,FR751489,F

R751496,AJ620234,A

F079173,FR751482,F

R751494,AB064601,

AB064596,AJ620223,

AJ620225,FR751510,

FR751486,AF129887,

AJ620213,DQ003342

,AJ620220,FR751473

,FR848324,AJ620222

,FR751505,FR75146

6,FR848326,FR7514

74,AB064604,FR751

498,FR751467,AJ620

215,AJ620217,FR751

464,FR751488,FR75

1499

Torque teno virus 1
NC_002076
vertebrates,human
2
Anelloviridae,Alphatorquevirus,Torque teno
—
AB041007,AB008394

virus 1

Torque teno virus 1
NC_014070
vertebrates,human
5
Anelloviridae,lotatorquevirus,Torque teno sus
—
GU570202,GU57019

virus 1a

8,GU570201,GU5701

99,GU570200

Torque teno virus 10
NC_014076
vertebrates,human
2
Anelloviridae,Alphatorquevirus,Torque teno
—
AB064607,GU797360

virus 10

Torque teno virus 12
NC_014075
vertebrates,human
1
Anelloviridae,Alphatorquevirus,Torque teno
—
AB064605

virus 12

Torque teno virus 14
NC_014077
vertebrates,human
1
Anelloviridae,Alphatorquevirus,Torque teno
—
AB037926

virus 14

Torque teno virus 15
NC_014096
vertebrates,human
1
Anelloviridae,Alphatorquevirus,Torque teno
—
AB028668

virus 15

Torque teno virus 16
NC_014091
vertebrates,human
1
Anelloviridae,Alphatorquevirus,Torque teno
—
AB017613

virus 16

Torque teno virus 19
NC_014078
vertebrates,human
1
Anelloviridae,Alphatorquevirus,Torque teno
—
AB025946

virus 19

Torque teno virus 2
NC_014480
vertebrates,human
1
Anelloviridae,Alphatorquevirus,Torque teno
—
AB049608

virus 2

Torque teno virus 25
NC_014083
vertebrates,human
1
Anelloviridae,Alphatorquevirus,Torque teno
—
AB041959

virus 25

Torque teno virus 26
NC_014079
vertebrates,human
1
Anelloviridae,Alphatorquevirus,Torque teno
—
AB041958

virus 26

Torque teno virus 27
NC_014074
vertebrates,human
1
Anelloviridae,Alphatorquevirus,Torque teno
—
AB064595

virus 27

Torque teno virus 28
NC_014073
vertebrates,human
1
Anelloviridae,Alphatorquevirus,Torque teno
—
AB064598

virus 28

Torque teno virus 3
NC_014081
vertebrates,human
1
Anelloviridae,Alphatorquevirus,Torque teno
—
AY666122

virus 3

Torque teno virus 4
NC_014069
vertebrates,human
1
Anelloviridae,Alphatorquevirus,Torque teno
—
AB041957

virus 4

Torque teno virus 6
NC_014094
vertebrates,human
1
Anelloviridae,Alphatorquevirus,Torque teno
—
AF435014

virus 6

Torque teno virus 7
NC_014080
vertebrates,human
1
Anelloviridae,Alphatorquevirus,Torque teno
—
AF261761

virus 7

Torque teno virus 8
NC_014084
vertebrates,human
1
Anelloviridae,Alphatorquevirus,Torque teno
—
AB054647

virus 8

Torque teno zalophus virus
NC_012126
vertebrates,human
1
Anelloviridae,Lambdatorquevirus,Torque teno
—
FJ459582

1

zalophus virus 1

Tula virus
NC_005226
vertebrates,human
1
Bunyaviridae,Hantavirus,Tula virus
seg. L
AJQ05637

Tula virus
NC_005227
vertebrates,human
18
Bunyaviridae,Hantavirus,Tula virus
seg. S
AM945877,Z30945,A

J223600,AF164093,Z

30942,AF017659,Z30

943,Z30944,Y13980,

AF164094,AJ223601,

AF442621,Z48573,Y1

3979,Z30941,Z48741,

Z48574,Z49915

Rotavirus A
NC_011508
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 3
JF490334

human/Victoria/CK00026/2

005/G1P[8]

Rotavirus A
NC_011509
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 6
JF490332

human/Victoria/CK00026/2

005/G1P[8]

Rotavirus A
NC_011510
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 4
JF490333

human/Victoria/CK00026/2

005/G1P[8]

Rotavirus A
NC_011500
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 5
JF490338

human/Victoria/CK00027/2

054/G1P[8]

Rotavirus A
NC_011501
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 7
JF490342

human/Victoria/CK00027/2

054/G1P[8]

Rotavirus A
NC_011502
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 8
JF490337

human/Victoria/CK00027/2

054/G1P[8]

Rotavirus A
NC_011503
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 9
JF490341

human/Victoria/CK00027/2

054/G1P[8]

Rotavirus A
NC_011504
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg.
JF490340

human/Victoria/CK00027/2

10

054/G1P[8]

Rotavirus A
NC_011505
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg.
JF490339

human/Victoria/CK00027/2

11

054/G1P[8]

Rotavirus A
NC_011506
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 2
JF490345

human/Victoria/CK00027/2

054/G1P[8]

Rotavirus A
NC_011507
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 1
JF490336

human/Victoria/CK00027/2

054/G1P[8]

Rotavirus A
NC_011508
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 3
JF490346

human/Victoria/CK00027/2

054/G1P[8]

Rotavirus A
NC_011509
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 6
JF490343

human/Victoria/CK00027/2

054/G1P[8]

Rotavirus A
NC_011510
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 4
JF490344

human/Victoria/CK00027/2

054/G1P[8]

Rotavirus A
NC_011500
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 5
JF490357

human/Victoria/CK00028/2

005/G1P[8]

Rotavirus A
NC_011501
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 7
JF490352

human/Victoria/CK00028/2

005/G1P[8]

Rotavirus A
NC_011502
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 8
JF490348

human/Victoria/CK00028/2

005/G1P[8]

Rotavirus A
NC_011503
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 9
JF490351

human/Victoria/CK00028/2

005/G1P[8]

Rotavirus A
NC_011504
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg.
JF490350

human/Victoria/CK00028/2

10

005/G1P[8]

Rotavirus A
NC_011505
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg.
JF490349

human/Victoria/CK00028/2

11

005/G1P[8]

Rotavirus A
NC_011506
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 2
JF490356

human/Victoria/CK00028/2

005/G1P[8]

Rotavirus A
NC_011507
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 1
JF490347

human/Victoria/CK00028/2

005/G1P[8]

Rotavirus A
NC_011508
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 3
JF490355

human/Victoria/CK00028/2

005/G1P[8]

Rotavirus A
NC_011509
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 6
JF490353

human/Victoria/CK00028/2

005/G1P[8]

Rotavirus A
NC_011510
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 4
JF490354

human/Victoria/CK00028/2

005/G1P[8]

Rotavirus A
NC_011500
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 5
JF490360

human/Victoria/CK00029/2

006/G1P[8]

Rotavirus A
NC_011501
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 7
JF490363

human/Victoria/CK00029/2

006/G1P[8]

Rotavirus A
NC_011502
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 8
JF490359

human/Victoria/CK00029/2

006/G1P[8]

Rotavirus A
NC_011503
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 9
JF490368

human/Victoria/CK00029/2

006/G1P[8]

Rotavirus A
NC_011504
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg.
JF490362

human/Victoria/CK00029/2

10

006/G1P[8]

Rotavirus A
NC_011505
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg.
JF490361

human/Victoria/CK00029/2

11

006/G1P[8]

Rotavirus A
NC_011506
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 2
JF490367

human/Victoria/CK00029/2

006/G1P[8]

Rotavirus A
NC_011507
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 1
JF490358

human/Victoria/CK00029/2

006/G1P[8]

Rotavirus A
NC_011508
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 3
JF490366

human/Victoria/CK00029/2

006/G1P[8]

Rotavirus A
NC_011509
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 6
JF490364

human/Victoria/CK00029/2

006/G1P[8]

Rotavirus A
NC_011510
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 4
JF490365

human/Victoria/CK00029/2

006/G1P[8]

Rotavirus A
NC_011500
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 5
JF490371

human/Victoria/CK00030/2

006/G1P[8]

Rotavirus A
NC_011501
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 7
JF490375

human/Victoria/CK00030/2

006/G1P[8]

Rotavirus A
NC_011502
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 8
JF490370

human/Victoria/CK00030/2

006/G1P[8]

Rotavirus A
NC_011503
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 9
JF490374

human/Victoria/CK00030/2

006/G1P[8]

Rotavirus A
NC_011504
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg.
JF490373

human/Victoria/CK00030/2

10

006/G1P[8]

Rotavirus A
NC_011505
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg.
JF490372

human/Victoria/CK00030/2

11

006/G1P[8]

Rotavirus A
NC_011506
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 2
JF490379

human/Victoria/CK00030/2

006/G1P[8]

Rotavirus A
NC_011507
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 1
JF490369

human/Victoria/CK00030/2

006/G1P[8]

Rotavirus A
NC_011508
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 3
JF490377

human/Victoria/CK00030/2

006/G1P[8]

Rotavirus A
NC_011509
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 6
JF490376

human/Victoria/CK00030/2

006/G1P[8]

Rotavirus A
NC_011510
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 4
JF490378

human/Victoria/CK00030/2

006/G1P[8]

Rotavirus A
NC_011500
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 5
JF490382

human/Victoria/CK00032/2

006/G1P[8]

Rotavirus A
NC_011501
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 7
JF490386

human/Victoria/CK00032/2

006/G1P[8]

Rotavirus A
NC_011502
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 8
JF490381

human/Victoria/CK00032/2

006/G1P[8]

Rotavirus A
NC_011503
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 9
JF490385

human/Victoria/CK00032/2

006/G1P[8]

Rotavirus A
NC_011504
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg.
JF490384

human/Victoria/CK00032/2

10

006/G1P[8]

Rotavirus A
NC_011505
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg.
JF490383

human/Victoria/CK00032/2

11

006/G1P[8]

Rotavirus A
NC_011506
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 2
JF490390

human/Victoria/CK00032/2

006/G1P[8]

Rotavirus A
NC_011507
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 1
JF490380

human/Victoria/CK00032/2

006/G1P[8]

Rotavirus A
NC_011508
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 3
JF490389

human/Victoria/CK00032/2

006/G1P[8]

Rotavirus A
NC_011509
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 6
JF490387

human/Victoria/CK00032/2

006/G1P[8]

Rotavirus A
NC_011510
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 4
JF490388

human/Victoria/CK00032/2

006/G1P[8]

Rotavirus A
NC_011500
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 5
JF490393

human/Victoria/CK00033/2

007/G1P[8]

Rotavirus A
NC_011501
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 7
JF490397

human/Victoria/CK00033/2

007/G1P[8]

Rotavirus A
NC_011502
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 8
JF490392

human/Victoria/CK00033/2

007/G1P[8]

Rotavirus A
NC_011503
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 9
JF490396

human/Victoria/CK00033/2

007/G1P[8]

Rotavirus A
NC_011504
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg.
JF490395

human/Victoria/CK00033/2

10

007/G1P[8]

Rotavirus A
NC_011505
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg.
JF490394

human/Victoria/CK00033/2

11

007/G1P[8]

Rotavirus A
NC_011506
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 2
JF490401

human/Victoria/CK00033/2

007/G1P[8]

Rotavirus A
NC_011507
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 1
JF490391

human/Victoria/CK00033/2

007/G1P[8]

Rotavirus A
NC_011508
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 3
JF490400

human/Victoria/CK00033/2

007/G1P[8]

Rotavirus A
NC_011509
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 6
JF490398

human/Victoria/CK00033/2

007/G1P[8]

Rotavirus A
NC_011510
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 4
JF490399

human/Victoria/CK00033/2

007/G1P[8]

Rotavirus A
NC_011500
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 5
JF490410

human/Victoria/CK00034/2

007/G1P[8]

Rotavirus A
NC_011501
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 7
JF490407

human/Victoria/CK00034/2

007/G1P[8]

Rotavirus A
NC_011502
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 8
JF490403

human/Victoria/CK00034/2

007/G1P[8]

Rotavirus A
NC_011503
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 9
JF490406

human/Victoria/CK00034/2

007/G1P[8]

Rotavirus A
NC_011504
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg.
JF490405

human/Victoria/CK00034/2

10

007/G1P[8]

Rotavirus A
NC_011505
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg.
JF490404

human/Victoria/CK00034/2

11

007/G1P[8]

Rotavirus A
NC_011506
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 2
JF490412

human/Victoria/CK00034/2

007/G1P[8]

Rotavirus A
NC_011507
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 1
JF490402

human/Victoria/CK00034/2

007/G1P[8]

Rotavirus A
NC_011508
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 3
JF490411

human/Victoria/CK00034/2

007/G1P[8]

Rotavirus A
NC_011509
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 6
JF490408

human/Victoria/CK00034/2

007/G1P[8]

Rotavirus A
NC_011510
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 4
JF490409

human/Victoria/CK00034/2

007/G1P[8]

Rotavirus A
NC_011500
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 5
JF490415

human/Victoria/CK00035/2

005/G1P[8]

Rotavirus A
NC_011501
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 7
JF490419

human/Victoria/CK00035/2

005/G1P[8]

Rotavirus A
NC_011502
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 8
JF490414

human/Victoria/CK00035/2

005/G1P[8]

Rotavirus A
NC_011503
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 9
JF490418

human/Victoria/CK00035/2

005/G1P[8]

Rotavirus A
NC_011504
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg.
JF490417

human/Victoria/CK00035/2

10

005/G1P[8]

Rotavirus A
NC_011505
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg.
JF490416

human/Victoria/CK00035/2

11

005/G1P[8]

Rotavirus A
NC_011506
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 2
JF490423

human/Victoria/CK00035/2

005/G1P[8]

Rotavirus A
NC_011507
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 1
JF490413

human/Victoria/CK00035/2

005/G1P[8]

Rotavirus A
NC_011508
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 3
JF490422

human/Victoria/CK00035/2

005/G1P[8]

Rotavirus A
NC_011509
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 6
JF490420

human/Victoria/CK00035/2

005/G1P[8]

Rotavirus A
NC_011510
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 4
JF490421

human/Victoria/CK00035/2

005/G1P[8]

Rotavirus A
NC_011500
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 5
JF490434

human/Victoria/CK00036/2

005/G1P[8]

Rotavirus A
NC_011501
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 7
JF490429

human/Victoria/CK00036/2

005/G1P[8]

Rotavirus A
NC_011502
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 8
JF490425

human/Victoria/CK00036/2

005/G1P[8]

Rotavirus A
NC_011503
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 9
JF490428

human/Victoria/CK00036/2

005/G1P[8]

Rotavirus A
NC_011504
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg.
JF490427

human/Victoria/CK00036/2

10

005/G1P[8]

Rotavirus A
NC_011505
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg.
JF490426

human/Victoria/CK00036/2

11

005/G1P[8]

Rotavirus A
NC_011506
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 2
JF490433

human/Victoria/CK00036/2

005/G1P[8]

Rotavirus A
NC_011507
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 1
JF490424

human/Victoria/CK00036/2

005/G1P[8]

Rotavirus A
NC_011508
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 3
JF490432

human/Victoria/CK00036/2

005/G1P[8]

Rotavirus A
NC_011509
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 6
JF490430

human/Victoria/CK00036/2

005/G1P[8]

Rotavirus A
NC_011510
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 4
JF490431

human/Victoria/CK00036/2

005/G1P[8]

Rotavirus A
NC_011500
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 5
JF490443

human/Victoria/CK00037/2

006/G1P[8]

Rotavirus A
NC_011501
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 7
JF490439

human/Victoria/CK00037/2

006/G1P[8]

Rotavirus A
NC_011502
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 8
JF490436

human/Victoria/CK00037/2

006/G1P[8]

Rotavirus A
NC_011503
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 9
JF490444

human/Victoria/CK00037/2

006/G1P[8]

Rotavirus A
NC_011504
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg.
JF490438

human/Victoria/CK00037/2

10

006/G1P[8]

Rotavirus A
NC_011505
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg.
JF490437

human/Victoria/CK00037/2

11

006/G1P[8]

Rotavirus A
NC_011506
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 2
JF490445

human/Victoria/CK00037/2

006/G1P[8]

Rotavirus A
NC_011507
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 1
JF490435

human/Victoria/CK00037/2

006/G1P[8]

Rotavirus A
NC_011508
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 3
JF490442

human/Victoria/CK00037/2

006/G1P[8]

Rotavirus A
NC_011509
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 6
JF490440

human/Victoria/CK00037/2

006/G1P[8]

Rotavirus A
NC_011510
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 4
JF490441

human/Victoria/CK00037/2

006/G1P[8]

Rotavirus A
NC_011500
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 5
JF490448

human/Victoria/CK00039/2

006/G1P[8]

Rotavirus A
NC_011501
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 7
JF490452

human/Victoria/CK00039/2

006/G1P[8]

Rotavirus A
NC_011502
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 8
JF490447

human/Victoria/CK00039/2

006/G1P[8]

Rotavirus A
NC_011503
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 9
JF490451

human/Victoria/CK00039/2

006/G1P[8]

Rotavirus A
NC_011504
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg.
JF490450

human/Victoria/CK00039/2

10

006/G1P[8]

Rotavirus A
NC_011505
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg.
JF490449

human/Victoria/CK00039/2

11

006/G1P[8]

Rotavirus A
NC_011506
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 2
JF490456

human/Victoria/CK00039/2

006/G1P[8]

Rotavirus A
NC_011507
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 1
JF490446

human/Victoria/CK00039/2

006/G1P[8]

Rotavirus A
NC_011508
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 3
JF490455

human/Victoria/CK00039/2

006/G1P[8]

Rotavirus A
NC_011509
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 6
JF490453

human/Victoria/CK00039/2

006/G1P[8]

Rotavirus A
NC_011510
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 4
JF490454

human/Victoria/CK00039/2

006/G1P[8]

Rotavirus A
NC_011500
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 5
JF490459

human/Victoria/CK00040/2

006/G1P[8]

Rotavirus A
NC_011501
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 7
JF490463

human/Victoria/CK00040/2

006/G1P[8]

Rotavirus A
NC_011502
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 8
JF490458

human/Victoria/CK00040/2

006/G1P[8]

Rotavirus A
NC_011503
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 9
JF490462

human/Victoria/CK00040/2

006/G1P[8]

Rotavirus A
NC_011504
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg.
JF490461

human/Victoria/CK00040/2

10

006/G1P[8]

Rotavirus A
NC_011505
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg.
JF490460

human/Victoria/CK00040/2

11

006/G1P[8]

Rotavirus A
NC_011506
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 2
JF490467

human/Victoria/CK00040/2

006/G1P[8]

Rotavirus A
NC_011507
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 1
JF490457

human/Victoria/CK00040/2

006/G1P[8]

Rotavirus A
NC_011508
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 3
JF490466

human/Victoria/CK00040/2

006/G1P[8]

Rotavirus A
NC_011509
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 6
JF490464

human/Victoria/CK00040/2

006/G1P[8]

Rotavirus A
NC_011510
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 4
JF490465

human/Victoria/CK00040/2

006/G1P[8]

Rotavirus A
NC_011500
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 5
JF490470

human/Victoria/CK00041/2

006/G1P[8]

Rotavirus A
NC_011501
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 7
JF490474

human/Victoria/CK00041/2

006/G1P[8]

Rotavirus A
NC_011502
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 8
JF490469

human/Victoria/CK00041/2

006/G1P[8]

Rotavirus A
NC_011503
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 9
JF490473

human/Victoria/CK00041/2

006/G1P[8]

Rotavirus A
NC_011504
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg.
JF490472

human/Victoria/CK00041/2

10

006/G1P[8]

Rotavirus A
NC_011505
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg.
JF490471

human/Victoria/CK00041/2

11

006/G1P[8]

Rotavirus A
NC_011506
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 2
JF490478

human/Victoria/CK00041/2

006/G1P[8]

Rotavirus A
NC_011507
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 1
JF490468

human/Victoria/CK00041/2

006/G1P[8]

Rotavirus A
NC_011508
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 3
JF490477

human/Victoria/CK00041/2

006/G1P[8]

Rotavirus A
NC_011509
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 6
JF490475

human/Victoria/CK00041/2

006/G1P[8]

Rotavirus A
NC_011510
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 4
JF490476

human/Victoria/CK00041/2

006/G1P[8]

Rotavirus A
NC_011500
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 5
JF490481

human/Victoria/CK00043/2

006/G1P[8]

Rotavirus A
NC_011501
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 7
JF490485

human/Victoria/CK00043/2

006/G1P[8]

Rotavirus A
NC_011502
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 8
JF490480

human/Victoria/CK00043/2

006/G1P[8]

Rotavirus A
NC_011503
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 9
JF490484

human/Victoria/CK00043/2

006/G1P[8]

Rotavirus A
NC_011504
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg.
JF490483

human/Victoria/CK00043/2

10

006/G1P[8]

Rotavirus A
NC_011505
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg.
JF490482

human/Victoria/CK00043/2

11

006/G1P[8]

Rotavirus A
NC_011506
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 2
JF490489

human/Victoria/CK00043/2

006/G1P[8]

Rotavirus A
NC_011507
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 1
JF490479

human/Victoria/CK00043/2

006/G1P[8]

Rotavirus A
NC_011508
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 3
JF490488

human/Victoria/CK00043/2

006/G1P[8]

Rotavirus A
NC_011509
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 6
JF490486

human/Victoria/CK00043/2

006/G1P[8]

Rotavirus A
NC_011510
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 4
JF490487

human/Victoria/CK00043/2

006/G1P[8]

Rotavirus A
NC_011500
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 5
JF490495

human/Victoria/CK00045/2

006/G1P[8]

Rotavirus A
NC_011501
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 7
JF490499

human/Victoria/CK00045/2

006/G1P[8]

Rotavirus A
NC_011502
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 8
JF490494

human/Victoria/CK00045/2

006/G1P[8]

Rotavirus A
NC_011503
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 9
JF490498

human/Victoria/CK00045/2

006/G1P[8]

Rotavirus A
NC_011504
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg.
JF490497

human/Victoria/CK00045/2

10

006/G1P[8]

Rotavirus A
NC_011505
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg.
JF490496

human/Victoria/CK00045/2

11

006/G1P[8]

Rotavirus A
NC_011506
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 2
JF490493

human/Victoria/CK00045/2

006/G1P[8]

Rotavirus A
NC_011507
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 1
JF490490

human/Victoria/CK00045/2

006/G1P[8]

Rotavirus A
NC_011508
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 3
JF490492

human/Victoria/CK00045/2

006/G1P[8]

Rotavirus A
NC_011509
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 6
JF490500

human/Victoria/CK00045/2

006/G1P[8]

Rotavirus A
NC_011510
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 4
JF490491

human/Victoria/CK00045/2

006/G1P[8]

Rotavirus A
NC_011500
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 5
JF490503

human/Victoria/CK00046/2

006/G1P[8]

Rotavirus A
NC_011501
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 7
JF490507

human/Victoria/CK00046/2

006/G1P[8]

Rotavirus A
NC_011502
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 8
JF490502

human/Victoria/CK00046/2

006/G1P[8]

Rotavirus A
NC_011503
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 9
JF490506

human/Victoria/CK00046/2

006/G1P[8]

Rotavirus A
NC_011504
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg.
JF490505

human/Victoria/CK00046/2

10

006/G1P[8]

Rotavirus A
NC_011505
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg.
JF490504

human/Victoria/CK00046/2

11

006/G1P[8]

Rotavirus A
NC_011506
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 2
JF490511

human/Victoria/CK00046/2

006/G1P[8]

Rotavirus A
NC_011507
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 1
JF490501

human/Victoria/CK00046/2

006/G1P[8]

Rotavirus A
NC_011508
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 3
JF490510

human/Victoria/CK00046/2

006/G1P[8]

Rotavirus A
NC_011509
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 6
JF490508

human/Victoria/CK00046/2

006/G1P[8]

Rotavirus A
NC_011510
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 4
JF490509

human/Victoria/CK00046/2

006/G1P[8]

Rotavirus A
NC_011500
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 5
JF490514

human/Victoria/CK00047/2

006/G1P[8]

Rotavirus A
NC_011501
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 7
JF490518

human/Victoria/CK00047/2

006/G1P[8]

Rotavirus A
NC_011502
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 8
JF490513

human/Victoria/CK00047/2

006/G1P[8]

Rotavirus A
NC_011503
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 9
JF490517

human/Victoria/CK00047/2

006/G1P[8]

Rotavirus A
NC_011504
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg.
JF490516

human/Victoria/CK00047/2

10

006/G1P[8]

Rotavirus A
NC_011505
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg.
JF490515

human/Victoria/CK00047/2

11

006/G1P[8]

Rotavirus A
NC_011506
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 2
JF490522

human/Victoria/CK00047/2

006/G1P[8]

Rotavirus A
NC_011507
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 1
JF490512

human/Victoria/CK00047/2

006/G1P[8]

Rotavirus A
NC_011508
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 3
JF490521

human/Victoria/CK00047/2

006/G1P[8]

Rotavirus A
NC_011509
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 6
JF490519

human/Victoria/CK00047/2

006/G1P[8]

Rotavirus A
NC_011510
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 4
JF490520

human/Victoria/CK00047/2

006/G1P[8]

Rotavirus A
NC_011500
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 5
JF490525

human/Victoria/CK00048/2

004/G1P[8]

Rotavirus A
NC_011501
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 7
JF490529

human/Victoria/CK00048/2

004/G1P[8]

Rotavirus A
NC_011502
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 8
JF490524

human/Victoria/CK00048/2

004/G1P[8]

Rotavirus A
NC_011503
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 9
JF490528

human/Victoria/CK00048/2

004/G1P[8]

Rotavirus A
NC_011504
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg.
JF490527

human/Victoria/CK00048/2

10

004/G1P[8]

Rotavirus A
NC_011505
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg.
JF490526

human/Victoria/CK00048/2

11

004/G1P[8]

Rotavirus A
NC_011506
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 2
JF490533

human/Victoria/CK00048/2

004/G1P[8]

Rotavirus A
NC_011507
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 1
JF490523

human/Victoria/CK00048/2

004/G1P[8]

Rotavirus A
NC_011508
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 3
JF490532

human/Victoria/CK00048/2

004/G1P[8]

Rotavirus A
NC_011509
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 6
JF490530

human/Victoria/CK00048/2

004/G1P[8]

Rotavirus A
NC_011510
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 4
JF490531

human/Victoria/CK00048/2

004/G1P[8]

Rotavirus A
NC_011500
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 5
JF490536

human/Victoria/CK00049/2

004/G1P[8]

Rotavirus A
NC_011501
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 7
JF490540

human/Victoria/CK00049/2

004/G1P[8]

Rotavirus A
NC_011502
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 8
JF490535

human/Victoria/CK00049/2

004/G1P[8]

Rotavirus A
NC_011503
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 9
JF490539

human/Victoria/CK00049/2

004/G1P[8]

Rotavirus A
NC_011504
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg.
JF490538

human/Victoria/CK00049/2

10

004/G1P[8]

Rotavirus A
NC_011505
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg.
JF490537

human/Victoria/CK00049/2

11

004/G1P[8]

Rotavirus A
NC_011506
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 2
JF490544

human/Victoria/CK00049/2

004/G1P[8]

Rotavirus A
NC_011507
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 1
JF490534

human/Victoria/CK00049/2

004/G1P[8]

Rotavirus A
NC_011508
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 3
JF490542

human/Victoria/CK00049/2

004/G1P[8]

Rotavirus A
NC_011509
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 6
JF490541

human/Victoria/CK00049/2

004/G1P[8]

Rotavirus A
NC_011510
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 4
JF490543

human/Victoria/CK00049/2

004/G1P[8]

Rotavirus A
NC_011500
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 5
JF490553

human/Victoria/CK00050/2

005/G1P[8]

Rotavirus A
NC_011501
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 7
JF490550

human/Victoria/CK00050/2

005/G1P[8]

Rotavirus A
NC_011502
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 8
JF490546

human/Victoria/CK00050/2

005/G1P[8]

Rotavirus A
NC_011503
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 9
JF490549

human/Victoria/CK00050/2

005/G1P[8]

Rotavirus A
NC_011504
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg.
JF490548

human/Victoria/CK00050/2

10

005/G1P[8]

Rotavirus A
NC_011505
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg.
JF490547

human/Victoria/CK00050/2

11

005/G1P[8]

Rotavirus A
NC_011506
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 2
JF490555

human/Victoria/CK00050/2

005/G1P[8]

Rotavirus A
NC_011507
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 1
JF490545

human/Victoria/CK00050/2

005/G1P[8]

Rotavirus A
NC_011508
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 3
JF490552

human/Victoria/CK00050/2

005/G1P[8]

Rotavirus A
NC_011509
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 6
JF490551

human/Victoria/CK00050/2

005/G1P[8]

Rotavirus A
NC_011510
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 4
JF490554

human/Victoria/CK00050/2

005/G1P[8]

Rotavirus A pheasant-
NC_011502
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 8
JX204816

tc/GER/10V0112H5/2010/

G23P[37]

Rotavirus A pheasant-
NC_011503
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 9
JX204818

tc/GER/10V0112H5/2010/

G23P[37]

Rotavirus A pheasant-
NC_011506
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 2
JX204812

tc/GER/10V0112H5/2010/

G23P[37]

Rotavirus A pheasant-
NC_011507
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 1
JX204811

tc/GER/10V0112H5/2010/

G23P[37]

Rotavirus A pheasant-
NC_011508
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 3
JX204813

tc/GER/10V0112H5/2010/

G23P[37]

Rotavirus A pheasant-
NC_011509
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 6
JX204815

tc/GER/10V0112H5/2010/

G23P[37]

Rotavirus A pheasant-
NC_011510
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 4
JX204814

tc/GER/10V0112H5/2010/

G23P[37]

Rotavirus A
NC_011503
vertebrates,human
3
Reoviridae,Rotavirus,Rotavirus A
seg. 9
FN393054,FN393055

pheasant/HUN/2008

,FN393056

Rotavirus A sable
NC_011500
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 5
FJ495130

antelope/G6P[14]

Rotavirus A sable
NC_011501
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 7
FJ495134

antelope/G6P[14]

Rotavirus A sable
NC_011502
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 8
FJ495132

antelope/G6P[14]

Rotavirus A sable
NC_011503
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 9
FJ495133

antelope/G6P[14]

Rotavirus A sable
NC_011504
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg.
FJ495135

antelope/G6P[14]

10

Rotavirus A sable
NC_011505
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg.
FJ495136

antelope/G6P[14]

11

Rotavirus A sable
NC_011506
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 2
FJ495127

antelope/G6P[14]

Rotavirus A sable
NC_011507
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 1
FJ495126

antelope/G6P[14]

Rotavirus A sable
NC_011508
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 3
FJ495128

antelope/G6P[14]

Rotavirus A sable
NC_011509
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 6
FJ495131

antelope/G6P[14]

Rotavirus A sable
NC_011510
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 4
FJ495129

antelope/G6P[14]

Rotavirus A strain 116E/AG
NC_011500
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 5
FJ361205

Rotavirus A strain 116E/AG
NC_011501
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 7
FJ361207

Rotavirus A strain 116E/AG
NC_011502
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 8
FJ361208

Rotavirus A strain 116E/AG
NC_011503
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 9
FJ361209

Rotavirus A strain 116E/AG
NC_011504
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg.
FJ361210

10

Rotavirus A strain 116E/AG
NC_011505
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg.
FJ361211

11

Rotavirus A strain 116E/AG
NC_011506
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 2
FJ361202

Rotavirus A strain 116E/AG
NC_011507
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 1
FJ361201

Rotavirus A strain 116E/AG
NC_011508
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 3
FJ361203

Rotavirus A strain 116E/AG
NC_011509
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 6
FJ361206

Rotavirus A strain 116E/AG
NC_011510
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 4
FJ361204

Rotavirus A turkey-
NC_011502
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 8
JX204827

tc/GER/03V0002E10/2003/

G22P[35]

Rotavirus A turkey-
NC_011503
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 9
JX204829

tc/GER/03V0002E10/2003/

G22P[35]

Rotavirus A turkey-
NC_011506
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 2
JX204823

tc/GER/03V0002E10/2003/

G22P[35]

Rotavirus A turkey-
NC_011507
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 1
JX204822

tc/GER/03V0002E10/2003/

G22P[35]

Rotavirus A turkey-
NC_011508
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 3
JX204824

tc/GER/03V0002E10/2003/

G22P[35]

Rotavirus A turkey-
NC_011509
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 6
JX204826

tc/GER/03V0002E10/2003/

G22P[35]

Rotavirus A turkey-
NC_011510
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 4
JX204825

tc/GER/03V0002E10/2003/

G22P[35]

Rotavirus B
NC_021541
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus B
seg. 1
M97203

Rotavirus B
NC_021544
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus B
seg. 6
AF079157

Rotavirus B
NC_021549
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus B
seg.
AF079158

11

Rotavirus C
NC_007543
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus C
seg. 6
AJ132203

Rotavirus C
NC_007544
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus C
seg. 7
AJ132204

Rotavirus C
NC_007545
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus C
seg. 9
AJ132205

Rotavirus C
NC_007546
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus C
seg. 2
AJ303139

Rotavirus C
NC_007547
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus C
seg. 1
AJ304859

Rotavirus C
NC_007569
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus C
seg.
M81488

10

Rotavirus C
NC_007570
vertebrates,human
4
Reoviridae,Rotavirus,Rotavirus C
seg. 5
AF162434,M88768,E

F528570,X59843

Rotavirus C
NC_007571
vertebrates,human
15
Reoviridae,Rotavirus,Rotavirus C
seg. 8
U20990,U20989,U20

994,U20991,U20993,

X77257,U20992,X772

58,EF528571,X77256

,AJ549087,U20996,U

20987,U20995,U2098

8

Rotavirus C
NC_007572
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus C
seg. 3
X79442

Rotavirus C
NC_007573
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus C
seg.
X83967

11

Rotavirus C
NC_007574
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus C
seg. 4
X96697

Rotavirus F
NC_021625
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus F
seg. 1
JN596591

chicken/03V0568/DEU/2003

Rotavirus F
NC_021626
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus F
seg. 2
JQ919995

chicken/03V0568/DEU/2003

Rotavirus F
NC_021627
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus F
seg. 9
JQ919998

chicken/03V0568/DEU/2003

Rotavirus F
NC_021628
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus F
seg. 8
JQ920000

chicken/03V0568/DEU/2003

Rotavirus F
NC_021629
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus F
seg.
JQ920003

chicken/03V0568/DEU/2003

10

Rotavirus F
NC_021630
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus F
seg. 4
JQ919996

chicken/03V0568/DEU/2003

Rotavirus F
NC_021631
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus F
seg. 3
JQ919997

chicken/03V0568/DEU/2003

Rotavirus F
NC_021632
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus F
seg. 5
JQ919999

chicken/03V0568/DEU/2003

Rotavirus F
NC_021633
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus F
seg. 7
JQ920001

chicken/03V0568/DEU/2003

Rotavirus F
NC_021634
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus F
seg.
JQ920002

chicken/03V0568/DEU/2003

11

Rotavirus F
NC_021635
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus F
seg. 6
HQ403603

chicken/03V0568/DEU/2003

Rotavirus G
NC_021580
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus G
—
JQ920004

chicken/03V0567/DEU/2003

Rotavirus G
NC_021581
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus G
—
JQ920006

chicken/03V0567/DEU/2003

Rotavirus G
NC_021582
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus G
—
JQ920007

chicken/03V0567/DEU/2003

Rotavirus G
NC_021583
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus G
—
JQ920008

chicken/03V0567/DEU/2003

Rotavirus G
NC_021584
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus G
—
JQ920009

chicken/03V0567/DEU/2003

Rotavirus G
NC_021585
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus G
—
JQ920010

chicken/03V0567/DEU/2003

Rotavirus G
NC_021586
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus G
—
JQ920011

chicken/03V0567/DEU/2003

Rotavirus G
NC_021587
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus G
—
JQ920012

chicken/03V0567/DEU/2003

Rotavirus G
NC_021588
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus G
—
HQ403604

chicken/03V0567/DEU/2003

Rotavirus G
NC_021589
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus G
—
JQ920005

chicken/03V0567/DEU/2003

Rotavirus G
NC_021590
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus G
—
JN596592

chicken/03V0567/DEU/2003

Rotavirus G1
NC_011503
vertebrates,human
11
Reoviridae,Rotavirus,Rotavirus A
seg. 9
EU839916,EU839911

,EU839909,EU83991

3,EU839912,EU8399

10,EU839915,EU839

908,EU839907,EU83

9906,EU839914

19

Rotavirus G1
NC_011504
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg.
AY159645,AY159638

10
,AY159631,AY15963

6,AY159632,AY1596

46,AY159633,AY159

642,AY159643,AY15

9634,AY159644,AY1

59641,AY159640,AY

159630,AY159637,A

Y159639,AY159648,

AY159635,AY159647

Rotavirus G10
NC_011503
vertebrates,human
7
Reoviridae,Rotavirus,Rotavirus A
seg. 9
AY816181,JF681943,

AY843333,AY816182

,AY855063,JF681941

,AY843332

Rotavirus G10
NC_011504
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg.
AY855068

10

Rotavirus G12
NC_011501
vertebrates,human
2
Reoviridae,Rotavirus,Rotavirus A
seg. 7
EU839967,EU839973

Rotavirus G12
NC_011502
vertebrates,human
2
Reoviridae,Rotavirus,Rotavirus A
seg. 8
EU839968,EU839974

Rotavirus G12
NC_011503
vertebrates,human
18
Reoviridae,Rotavirus,Rotavirus A
seg. 9
AB436818,AB436813

,EU839943,EU83993

4,AB436814,EU8399

44,AB436815,EU839

942,EF059916,AB436

816,AB306271,AB43

6817,AB306270,EF05

9917,AB306268,EU8

39935,AB306269,AB

436819

Rotavirus G12
NC_011504
vertebrates,human
4
Reoviridae,Rotavirus,Rotavirus A
seg.
EU839969,EF059919

10
,EU839975,EF05991

8

Rotavirus G12
NC_011505
vertebrates,human
2
Reoviridae,Rotavirus,Rotavirus A
seg.
EU839970,EU839976

11

Rotavirus G12
NC_011509
vertebrates,human
2
Reoviridae,Rotavirus,Rotavirus A
seg. 6
EU839965,EU839971

Rotavirus G12
NC_011510
vertebrates,human
2
Reoviridae,Rotavirus,Rotavirus A
seg. 4
EF059921,EF059920

Rotavirus G2
NC_011503
vertebrates,human
16
Reoviridae,Rotavirus,Rotavirus A
seg. 9
AY707784,EU839925

,EU839919,EU83992

1,AY707785,EU8399

17,EU839926,EU839

918,EU839923,DQ47

8581,EU839924,EU8

39920,EU839922,EU

839928,AY707786,E

U839927

Rotavirus G2
NC_011504
vertebrates,human
3
Reoviridae,Rotavirus,Rotavirus A
seg.
AY159649,AF401756,

10
EU839964

Rotavirus G2
NC_011509
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 6
EU839963

Rotavirus G3
NC_011500
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 5
AY740735

Rotavirus G3
NC_011501
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 7
AY740734

Rotavirus G3
NC_011502
vertebrates,human
2
Reoviridae,Rotavirus,Rotavirus A
seg. 8
JQ358771,AY740733

Rotavirus G3
NC_011503
vertebrates,human
51
Reoviridae,Rotavirus,Rotavirus A
seg. 9
EF495119,EF495124,

AY707791,D86276,E

F495121,EF495127,D

0904498,D86266,D8

6280,D86264,D86282

,JQ358764,D86269,D

86265,AY707789,AY

707792,EF495122,D

0904499,DQ995488,

DQ995489,D86283,D

0904503,EF495118,

DQ904500,DQ90450

5,AY870661,DQ9045

06,EF495120,D86284

,D86281,DQ904502,

D86279,DQ904501,D

86271,DQ995490,D8

72,AY900173,AY707

794,EF495126,D8627

8,D86268,D86267,D8

6274,EF495123,AY74

0736,DQ904504,AY7

07793,EF495125,D86

275

Rotavirus G3
NC_011504
vertebrates,human
21
Reoviridae,Rotavirus,Rotavirus A
seg.
AB008240,AB008236

10
,AB008234,AB00824

6,AB008230,AB0082

33,AB008237,AY740

732,AB008242,AB0O

8238,AB008243,AB0

08231,AB008244,AB

008232,AB008245,A

B008248,AB008247,

AB008241,AB008239

,AB008229,AB00823

5

Rotavirus G3
NC_011505
vertebrates,human
2
Reoviridae,Rotavirus,Rotavirus A
seg.
JQ358774,AY740731

11

Rotavirus G3
NC_011506
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 2
AY740740

Rotavirus G3
NC_011507
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 1
AY740741

Rotavirus G3
NC_011508
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 3
AY740739

Rotavirus G3
NC_011509
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 6
AY740737

Rotavirus G3
NC_011510
vertebrates,human
20
Reoviridae,Rotavirus,Rotavirus A
seg. 4
AY740738,AB008277

,AB008279,AB00827

8,AB008290,AB0082

91,AB008282,AB0O8

289,AB008281,AB0O

8272,AB008273,AB0

08274,AB008285,AB

008275,AB008284,A

B008286,AB008283,

AB008280,AB008276

,AB008288

Rotavirus G4
NC_011503
vertebrates,human
33
Reoviridae,Rotavirus,Rotavirus A
seg. 9
AB012066,AB012074

,AF161822,AB039035

,AB012075,AB03902

6,AB039027,AB0120

71,AB039025,AB012

078,AF161821,AB039

029,AF161823,AB012

069,AF161817,AB012

065,AB012079,AB03

9028,AB012072,AF16

1818,AB039032,AB0

12077,AB012067,AB

012076,AB012073,A

B039031,AB012068,

AB012070,AF161820,

AB039030,AF161819,

AB039034,AB039033

Rotavirus G4
NC_011504
vertebrates,human
33
Reoviridae,Rotavirus,Rotavirus A
seg.
AB008255,AB008261

10
,AF161810,AB043069

,AF161815,AB043026

,AB008251,AB00826

0,AB008253,AB0082

62,AB008249,AF1618

11,AB043072,AB043

075,AF161813,AB0O8

258,AB043076,AF161

816,AB008259,AB0O

8252,AB008263,AB0

43077,AB008256,AB

043073,AB043070,A

B043078,AB043074,

AF161814,AB008250,

AB043071,AB008257

,AB008254,AF161812

Rotavirus G6
NC_011503
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 9
AF532202

Rotavirus G8
NC_011503
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 9
AY855064

Rotavirus G8
NC_011510
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 4
AF045228

Rotavirus G9
NC_011503
vertebrates,human
156
Reoviridae,Rotavirus,Rotavirus A
seg. 9
AY253834,AJ250544,

AB436831,AJ250276,

EF199728,AB436820,

AY699298,AB436832

,AY262748,AY69930

2,AY307092,AY3070

88,AY307094,AB436

833,AY866500,AY87

9296,AY699301,EF19

9729,AY253835,AY6

99291,FJ695604,EF1

99735,AJ250275,AY2

11065,AJ250270,EU8

39936,AJ250269,DQ

647423,EU839929,E

U839939,EF199736,

AB436821,DQ056298

,AY699292,AB09175

2,EF532837,AY69929

0,AB436822,EF19973

8,AB091755,EU8399

37,AY262747,AY211

067,AJ250268,AB364

369,EU839933,AY25

3836,AB436834,AJ25

0274,EU839932,AY6

99293,DQ056299,AJ

250277,DQ056300,E

F199737,HQ018933,J

F703095,DQ096290,

AY695811,AY211068

,HQ018932,AY25383

3,AY866504,EU8399

40,AY699294,AJ4911

79,DQ056297,EF199

730,AB091750,AJ491

177,AB436826,DQ05

6296,AY699297,AJ25

0272,EU839930,AB0

91751,JF703094,DQO

96288,EF199732,EF1

99726,AB091748,EF1

99734,AY253838,DQ

990318,AY262746,A

Y253839,EF687001,E

U839938,AY699296,

AY184813,AY307087

,AB436824,AJ491184

,AY699299,AB36438

0,AB045372,DQ0962

93,EF199727,AJ2502

73,EF059922,DQ096

292,AB436835,AY30

7086,AB436830,AB0

91754,AY307093,DQ

096289,AY699304,A

Y695809,AB091749,

AY262749,EF199725,

AB091756,DQ990319

,AY307091,AJ491175

,AY866502,AB43682

7,AB436825,AB0453

73,HQ018934,DQ096

294,AY699303,DQ99

0317,DQ096291,AB4

36829,AY866505,AY

253837,EU753963,A

B436823,AY866501,

AY866503,AB091747

,EU839941,EF19973

1,AB436828,AY3070

85,JF703096,AB0917

53,AF359358,AJ2505

40,AY307090,DQ490

173,EF199733,AB091

746,AY816184,AB04

5374,AJ250271,EU83

9931,AJ491172,AJ25

0545,AY699300,AY3

07089,AY699295,AY

211066,JF703097

Rotavirus G9
NC_011504
vertebrates,human
4
Reoviridae,Rotavirus,Rotavirus A
seg.
EF033203,EF059924,

10
EF033202,EF033204

Rotavirus G9
NC_011509
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 6
EU753964

Rotavirus G9
NC_011510
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 4
EF059923

Rotavirus
NC_011503
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 9
JX411969

RVA/G1/Human/India/UK-

HLD/2011/H14

Rotavirus
NC_011503
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 9
JX411970

RVA/G1/Human/India/UK-

HLD/2011/H180

Rotavirus
NC_011503
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 9
JX411968

RVA/G9/Human/India/UK-

HLD/2011/H140

Rotavirus str,US1205
NC_011503
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 9
AF060487

Rotavirus strain TUCH
NC_011509
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 6
AY594670

Rotavirus strain TUCH
NC_011510
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 4
AY596189

Rotavirus subgroup 1
NC_011503
vertebrates,human
2
Reoviridae,Rotavirus,Rotavirus A
seg. 9
K02028,L11605

Rotavirus subgroup 1
NC_011504
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg.
K03384

10

Rotavirus subgroup 1
NC_011505
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg.
K03385

11

Rotavirus subgroup 1
NC_011509
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 6
DQ0325

Rotavirus subgroup 2
NC_011501
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 7
X57944

Rotavirus subgroup 2
NC_011503
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 9
K02033

Rotavirus subgroup 2
NC_011504
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg.
K02032

10

Rotavirus subgroup 2
NC_011509
vertebrates,human
2
Reoviridae,Rotavirus,Rotavirus A
seg. 6
X57943,K02086

Rubella virus
NC_001545
vertebrates,human
47
Togaviridae,Rubivirus,Rubella virus
—
AY258323,JN635281,

JN635282,JN635292,

JN635285,AF435866,

JN635296,DQ085341

,AB047329,AF435865

,AB588193,DQ08534

0,L78917,JN635290,

AB588188,AB047330

,JN635293,JN635288

,AB222608,JN635284

,DQ388281,JN63529

1,JF727653,FJ21158

8,JN635287,AB22260

9,KF201674,AB58819

1,JN635295,JN63528

3,AB588192,JN63528

9,AF188704,AY25832

2,AB588189,JN63529

4,DQ388280,JF72765

4,DQ085342,AB5881

90,M15240,DQ08534

3,FJ211587,DQ08533

9,JN635286,DQ0853

38,DQ388279

SARS Coronavirus
NC_004718
vertebrates,human
1
Coronaviridae,Betacoronavirus,Severe acute
—
AY714217

CDC#200301157

respiratory syndrome-related coronavirus

SARS coronavirus
NC_004718
vertebrates,human
25
Coronaviridae,Betacoronavirus,Severe acute
—
AY545914,JX163925,

respiratory syndrome-related coronavirus

AY545917,CS569493

,C0918585,DQ89817

4,JX163923,C09185

84,CS079026,CS079

027,JX163924,JX163

926,AY545916,JX163

928,DQ497008,CS07

9029,JX163927,CS07

9028,CS254197,AY5

45918,C0918598,FJ9

59407,AY274119,AY

545919,AY545915

SARS coronavirus A022
NC_004718
vertebrates,human
1
Coronaviridae,Betacoronavirus,Severe acute
—
AY686863

respiratory syndrome-related coronavirus

SARS coronavirus AS
NC_004718
vertebrates,human
1
Coronaviridae,Betacoronavirus,Severe acute
—
AY427439

respiratory syndrome-related coronavirus

SARS coronavirus B039
NC_004718
vertebrates,human
1
Coronaviridae,Betacoronavirus,Severe acute
—
AY686864

respiratory syndrome-related coronavirus

SARS coronavirus BJQ1
NC_004718
vertebrates,human
1
Coronaviridae,Betacoronavirus,Severe acute
—
AY278488

respiratory syndrome-related coronavirus

SARS coronavirus BJQ2
NC_004718
vertebrates,human
1
Coronaviridae,Betacoronavirus,Severe acute
—
AY278487

respiratory syndrome-related coronavirus

SARS coronavirus BJQ3
NC_004718
vertebrates,human
1
Coronaviridae,Betacoronavirus,Severe acute
—
AY278490

respiratory syndrome-related coronavirus

SARS coronavirus BJQ4
NC_004718
vertebrates,human
1
Coronaviridae,Betacoronavirus,Severe acute
—
AY279354

respiratory syndrome-related coronavirus

SARS coronavirus BJ162
NC_004718
vertebrates,human
1
Coronaviridae,Betacoronavirus,Severe acute
—
AY864805

respiratory syndrome-related coronavirus

SARS coronavirus BJ182-
NC_004718
vertebrates,human
1
Coronaviridae,Betacoronavirus,Severe acute
—
EU371564

12

respiratory syndrome-related coronavirus

SARS coronavirus BJ182-4
NC_004718
vertebrates,human
1
Coronaviridae,Betacoronavirus,Severe acute
—
EU371562

respiratory syndrome-related coronavirus

SARS coronavirus BJ182-8
NC_004718
vertebrates,human
1
Coronaviridae,Betacoronavirus,Severe acute
—
EU371563

respiratory syndrome-related coronavirus

SARS coronavirus BJ182a
NC_004718
vertebrates,human
1
Coronaviridae,Betacoronavirus,Severe acute
—
EU371560

respiratory syndrome-related coronavirus

SARS coronavirus BJ182b
NC_004718
vertebrates,human
1
Coronaviridae,Betacoronavirus,Severe acute
—
EU371561

respiratory syndrome-related coronavirus

SARS coronavirus BJ202
NC_004718
vertebrates,human
1
Coronaviridae,Betacoronavirus,Severe acute
—
AY864806

respiratory syndrome-related coronavirus

SARS coronavirus CUHK-
NC_004718
vertebrates,human
1
Coronaviridae,Betacoronavirus,Severe acute
—
AY345986

AGO1

respiratory syndrome-related coronavirus

SARS coronavirus CUHK-
NC_004718
vertebrates,human
1
Coronaviridae,Betacoronavirus,Severe acute
—
AY345987

AGO2

respiratory syndrome-related coronavirus

SARS coronavirus CUHK-
NC_004718
vertebrates,human
1
Coronaviridae,Betacoronavirus,Severe acute
—
AY345988

AGO3

respiratory syndrome-related coronavirus

SARS coronavirus CUHK-
NC_004718
vertebrates,human
1
Coronaviridae,Betacoronavirus,Severe acute
—
AY282752

Sul 0

respiratory syndrome-related coronavirus

SARS coronavirus CUHK-
NC_004718
vertebrates,human
1
Coronaviridae,Betacoronavirus,Severe acute
—
AY278554

W1

respiratory syndrome-related coronavirus

SARS coronavirus ExoN1
NC_004718
vertebrates,human
33
Coronaviridae,Betacoronavirus,Severe acute
—
FJ882956,KF514395,

respiratory syndrome-related coronavirus

KF514410,FJ882950,

FJ882931,KF514412,

KF514406,KF514403,

FJ882955,KF514401,

KF514416,KF514391,

FJ882940,KF514417,

KF514420,KF514393,

KF514389,KF514405,

KF514390,KF514402,

FJ882926,KF514411,

FJ882928,FJ882930,

KF514414,FJ882941,

FJ882944,KF514407,

FJ882954,FJ882960,

JF292922,JX162087,

FJ882929

SARS coronavirus FRA
NC_004718
vertebrates,human
1
Coronaviridae,Betacoronavirus,Severe acute
—
AY310120

respiratory syndrome-related coronavirus

SARS coronavirus
NC_004718
vertebrates,human
2
Coronaviridae,Betacoronavirus,Severe acute
—
AB257344,AY291315

Frankfurt 1

respiratory syndrome-related coronavirus

SARS coronavirus GDQ1
NC_004718
vertebrates,human
1
Coronaviridae,Betacoronavirus,Severe acute
—
AY278489

respiratory syndrome-related coronavirus

SARS coronavirus GD69
NC_004718
vertebrates,human
1
Coronaviridae,Betacoronavirus,Severe acute
—
AY313906

respiratory syndrome-related coronavirus

SARS coronavirus GDH-
NC_004718
vertebrates,human
1
Coronaviridae,Betacoronavirus,Severe acute
—
DQ640652

BJHO1

respiratory syndrome-related coronavirus

SARS coronavirus GZ-A
NC_004718
vertebrates,human
1
Coronaviridae,Betacoronavirus,Severe acute
—
AY394977

respiratory syndrome-related coronavirus

SARS coronavirus GZ-B
NC_004718
vertebrates,human
1
Coronaviridae,Betacoronavirus,Severe acute
—
AY394978

respiratory syndrome-related coronavirus

SARS coronavirus GZ-C
NC_004718
vertebrates,human
1
Coronaviridae,Betacoronavirus,Severe acute
—
AY394979

respiratory syndrome-related coronavirus

SARS coronavirus GZ-D
NC_004718
vertebrates,human
1
Coronaviridae,Betacoronavirus,Severe acute
—
AY394980

respiratory syndrome-related coronavirus

SARS coronavirus GZO2
NC_004718
vertebrates,human
1
Coronaviridae,Betacoronavirus,Severe acute
—
AY390556

respiratory syndrome-related coronavirus

SARS coronavirus GZ0401
NC_004718
vertebrates,human
1
Coronaviridae,Betacoronavirus,Severe acute
—
AY568539

respiratory syndrome-related coronavirus

SARS coronavirus GZ0402
NC_004718
vertebrates,human
1
Coronaviridae,Betacoronavirus,Severe acute
—
AY613947

respiratory syndrome-related coronavirus

SARS coronavirus GZ50
NC_004718
vertebrates,human
1
Coronaviridae,Betacoronavirus,Severe acute
—
AY304495

respiratory syndrome-related coronavirus

SARS coronavirus
NC_004718
vertebrates,human
1
Coronaviridae,Betacoronavirus,Severe acute
—
AY515512

HC/SZ/61/03

respiratory syndrome-related coronavirus

SARS coronavirus
NC_004718
vertebrates,human
1
Coronaviridae,Betacoronavirus,Severe acute
—
AY394981

HGZ8L1-A

respiratory syndrome-related coronavirus

SARS coronavirus
NC_004718
vertebrates,human
1
Coronaviridae,Betacoronavirus,Severe acute
—
AY394982

HGZ8L1-B

respiratory syndrome-related coronavirus

SARS coronavirus HGZ8L2
NC_004718
vertebrates,human
1
Coronaviridae,Betacoronavirus,Severe acute
—
AY394993

respiratory syndrome-related coronavirus

SARS coronavirus HKU-
NC_004718
vertebrates,human
6
Coronaviridae,Betacoronavirus,Severe acute
—
JQ316196,JN854286,

39849

respiratory syndrome-related coronavirus

GU553365,AY278491

,GU553363,GU55336

4

SARS coronavirus HSR 1
NC_004718
vertebrates,human
1
Coronaviridae,Betacoronavirus,Severe acute
—
AY323977

respiratory syndrome-related coronavirus

SARS coronavirus HSZ-A
NC_004718
vertebrates,human
1
Coronaviridae,Betacoronavirus,Severe acute
—
AY394984

respiratory syndrome-related coronavirus

SARS coronavirus HSZ-Bb
NC_004718
vertebrates,human
1
Coronaviridae,Betacoronavirus,Severe acute
—
AY394985

respiratory syndrome-related coronavirus

SARS coronavirus HSZ-Bc
NC_004718
vertebrates,human
1
Coronaviridae,Betacoronavirus,Severe acute
—
AY394994

respiratory syndrome-related coronavirus

SARS coronavirus HSZ-Cb
NC_004718
vertebrates,human
1
Coronaviridae,Betacoronavirus,Severe acute
—
AY394986

respiratory syndrome-related coronavirus

SARS coronavirus HSZ-Cc
NC_004718
vertebrates,human
1
Coronaviridae,Betacoronavirus,Severe acute
—
AY394995

respiratory syndrome-related coronavirus

SARS coronavirus HSZ2-A
NC_004718
vertebrates,human
1
Coronaviridae,Betacoronavirus,Severe acute
—
AY394983

respiratory syndrome-related coronavirus

SARS coronavirus HZS2-
NC_004718
vertebrates,human
1
Coronaviridae,Betacoronavirus,Severe acute
—
AY395004

Bb

respiratory syndrome-related coronavirus

SARS coronavirus HZS2-C
NC_004718
vertebrates,human
1
Coronaviridae,Betacoronavirus,Severe acute
—
AY394992

respiratory syndrome-related coronavirus

SARS coronavirus HZS2-D
NC_004718
vertebrates,human
1
Coronaviridae,Betacoronavirus,Severe acute
—
AY394989

respiratory syndrome-related coronavirus

SARS coronavirus HZS2-E
NC_004718
vertebrates,human
1
Coronaviridae,Betacoronavirus,Severe acute
—
AY394990

respiratory syndrome-related coronavirus

SARS coronavirus HZS2-
NC_004718
vertebrates,human
1
Coronaviridae,Betacoronavirus,Severe acute
—
AY394987

Fb

respiratory syndrome-related coronavirus

SARS coronavirus HZS2-
NC_004718
vertebrates,human
1
Coronaviridae,Betacoronavirus,Severe acute
—
AY394991

Fc

respiratory syndrome-related coronavirus

SARS coronavirus JMD
NC_004718
vertebrates,human
1
Coronaviridae,Betacoronavirus,Severe acute
—
AY394988

respiratory syndrome-related coronavirus

SARS coronavirus LC1
NC_004718
vertebrates,human
1
Coronaviridae,Betacoronavirus,Severe acute
—
AY394998

respiratory syndrome-related coronavirus

SARS coronavirus LC2
NC_004718
vertebrates,human
1
Coronaviridae,Betacoronavirus,Severe acute
—
AY394999

respiratory syndrome-related coronavirus

SARS coronavirus LC3
NC_004718
vertebrates,human
1
Coronaviridae,Betacoronavirus,Severe acute
—
AY395000

respiratory syndrome-related coronavirus

SARS coronavirus LC4
NC_004718
vertebrates,human
1
Coronaviridae,Betacoronavirus,Severe acute
—
AY395001

respiratory syndrome-related coronavirus

SARS coronavirus LC5
NC_004718
vertebrates,human
1
Coronaviridae,Betacoronavirus,Severe acute
—
AY395002

respiratory syndrome-related coronavirus

SARS coronavirus LU-
NC_004718
vertebrates,human
1
Coronaviridae,Betacoronavirus,Severe acute
—
AY595412

2004

respiratory syndrome-related coronavirus

SARS coronavirus MA15
NC_004718
vertebrates,human
26
Coronaviridae,Betacoronavirus,Severe acute
—
FJ882958,JF292910,

respiratory syndrome-related coronavirus

FJ882961,JF292912,

FJ882948,JF292914,

JF292911,JF292908,

FJ882952,JF292915,

JF292918,HQ890546,

HQ890542,JF292917,

FJ882945,JF292913,

HQ890543,HQ89054

4,HQ890545,HQ8905

41,JF292916,JF2929

19,JF292909,JF2929

07,FJ882957,JF2929

20

SARS coronavirus MA15
NC_004718
vertebrates,human
26
Coronaviridae,Betacoronavirus,Severe acute
—
FJ882953,HQ890539,

ExoN1

respiratory syndrome-related coronavirus

JF292904,FJ882942,

HQ890527,HQ89052

9,HQ890538,HQ8905

36,HQ890540,JF2929

03,HQ890526,HQ890

537,FJ882959,FJ882

943,FJ882951,HQ890

530,HQ890535,JF292

902,HQ890532,HQ89

0533,HQ890531,HQ8

90534,HQ890528,JF2

92906,JF292905,FJ8

82962

SARS coronavirus NS-1
NC_004718
vertebrates,human
1
Coronaviridae,Betacoronavirus,Severe acute
—
AY508724

respiratory syndrome-related coronavirus

SARS coronavirus P2
NC_004718
vertebrates,human
1
Coronaviridae,Betacoronavirus,Severe acute
—
FJ882963

respiratory syndrome-related coronavirus

SARS coronavirus PC4-13
NC_004718
vertebrates,human
1
Coronaviridae,Betacoronavirus,Severe acute
—
AY613948

respiratory syndrome-related coronavirus

SARS coronavirus PC4-
NC_004718
vertebrates,human
1
Coronaviridae,Betacoronavirus,Severe acute
—
AY613949

136

respiratory syndrome-related coronavirus

SARS coronavirus PC4-
NC_004718
vertebrates,human
1
Coronaviridae,Betacoronavirus,Severe acute
—
AY613950

227

respiratory syndrome-related coronavirus

SARS coronavirus
NC_004718
vertebrates,human
1
Coronaviridae,Betacoronavirus,Severe acute
—
AY350750

PUMC01

respiratory syndrome-related coronavirus

SARS coronavirus
NC_004718
vertebrates,human
1
Coronaviridae,Betacoronavirus,Severe acute
—
AY357075

PUMCO2

respiratory syndrome-related coronavirus

SARS coronavirus
NC_004718
vertebrates,human
1
Coronaviridae,Betacoronavirus,Severe acute
—
AY357076

PUMC03

respiratory syndrome-related coronavirus

SARS coronavirus
NC_004718
vertebrates,human
1
Coronaviridae,Betacoronavirus,Severe acute
—
FJ588686

Rs_672/2006

respiratory syndrome-related coronavirus

SARS coronavirus
NC_004718
vertebrates,human
1
Coronaviridae,Betacoronavirus,Severe acute
—
AY463059

ShanghaiQXC1

respiratory syndrome-related coronavirus

SARS coronavirus
NC_004718
vertebrates,human
1
Coronaviridae,Betacoronavirus,Severe acute
—
AY463060

ShanghaiQXC2

respiratory syndrome-related coronavirus

SARS coronavirus Sin2500
NC_004718
vertebrates,human
1
Coronaviridae,Betacoronavirus,Severe acute
—
AY283794

respiratory syndrome-related coronavirus

SARS coronavirus Sin2677
NC_004718
vertebrates,human
1
Coronaviridae,Betacoronavirus,Severe acute
—
AY283795

respiratory syndrome-related coronavirus

SARS coronavirus Sin2679
NC_004718
vertebrates,human
1
Coronaviridae,Betacoronavirus,Severe acute
—
AY283796

respiratory syndrome-related coronavirus

SARS coronavirus Sin2748
NC_004718
vertebrates,human
1
Coronaviridae,Betacoronavirus,Severe acute
—
AY283797

respiratory syndrome-related coronavirus

SARS coronavirus Sin2774
NC_004718
vertebrates,human
1
Coronaviridae,Betacoronavirus,Severe acute
—
AY283798

respiratory syndrome-related coronavirus

SARS coronavirus Sin3408
NC_004718
vertebrates,human
1
Coronaviridae,Betacoronavirus,Severe acute
—
AY559083

respiratory syndrome-related coronavirus

SARS coronavirus
NC_004718
vertebrates,human
1
Coronaviridae,Betacoronavirus,Severe acute
—
AY559097

Sin3408L

respiratory syndrome-related coronavirus

SARS coronavirus
NC_004718
vertebrates,human
1
Coronaviridae,Betacoronavirus,Severe acute
—
AY559087

Sin3725V

respiratory syndrome-related coronavirus

SARS coronavirus
NC_004718
vertebrates,human
1
Coronaviridae,Betacoronavirus,Severe acute
—
AY559084

Sin3765V

respiratory syndrome-related coronavirus

SARS coronavirus Sin842
NC_004718
vertebrates,human
1
Coronaviridae,Betacoronavirus,Severe acute
—
AY559081

respiratory syndrome-related coronavirus

SARS coronavirus Sin845
NC_004718
vertebrates,human
1
Coronaviridae,Betacoronavirus,Severe acute
—
AY559093

respiratory syndrome-related coronavirus

SARS coronavirus Sin846
NC_004718
vertebrates,human
1
Coronaviridae,Betacoronavirus,Severe acute
—
AY559094

respiratory syndrome-related coronavirus

SARS coronavirus Sin847
NC_004718
vertebrates,human
1
Coronaviridae,Betacoronavirus,Severe acute
—
AY559095

respiratory syndrome-related coronavirus

SARS coronavirus Sin848
NC_004718
vertebrates,human
1
Coronaviridae,Betacoronavirus,Severe acute
—
AY559085

respiratory syndrome-related coronavirus

SARS coronavirus Sin849
NC_004718
vertebrates,human
1
Coronaviridae,Betacoronavirus,Severe acute
—
AY559086

respiratory syndrome-related coronavirus

SARS coronavirus Sin850
NC_004718
vertebrates,human
1
Coronaviridae,Betacoronavirus,Severe acute
—
AY559096

respiratory syndrome-related coronavirus

SARS coronavirus Sin852
NC_004718
vertebrates,human
1
Coronaviridae,Betacoronavirus,Severe acute
—
AY559082

respiratory syndrome-related coronavirus

SARS coronavirus SinP1
NC_004718
vertebrates,human
1
Coronaviridae,Betacoronavirus,Severe acute
—
AY559088

respiratory syndrome-related coronavirus

SARS coronavirus SinP2
NC_004718
vertebrates,human
1
Coronaviridae,Betacoronavirus,Severe acute
—
AY559089

respiratory syndrome-related coronavirus

SARS coronavirus SinP3
NC_004718
vertebrates,human
1
Coronaviridae,Betacoronavirus,Severe acute
—
AY559090

respiratory syndrome-related coronavirus

SARS coronavirus SinP4
NC_004718
vertebrates,human
1
Coronaviridae,Betacoronavirus,Severe acute
—
AY559091

respiratory syndrome-related coronavirus

SARS coronavirus SinP5
NC_004718
vertebrates,human
1
Coronaviridae,Betacoronavirus,Severe acute
—
AY559092

respiratory syndrome-related coronavirus

SARS coronavirus Sino1-
NC_004718
vertebrates,human
1
Coronaviridae,Betacoronavirus,Severe acute
—
AY485277

11

respiratory syndrome-related coronavirus

SARS coronavirus Sino3-
NC_004718
vertebrates,human
1
Coronaviridae,Betacoronavirus,Severe acute
—
AY485278

11

respiratory syndrome-related coronavirus

SARS coronavirus SoD
NC_004718
vertebrates,human
1
Coronaviridae,Betacoronavirus,Severe acute
—
AY461660

respiratory syndrome-related coronavirus

SARS coronavirus TJF
NC_004718
vertebrates,human
1
Coronaviridae,Betacoronavirus,Severe acute
—
AY654624

respiratory syndrome-related coronavirus

SARS coronavirus TW1
NC_004718
vertebrates,human
1
Coronaviridae,Betacoronavirus,Severe acute
—
AY291451

respiratory syndrome-related coronavirus

SARS coronavirus TW10
NC_004718
vertebrates,human
1
Coronaviridae,Betacoronavirus,Severe acute
—
AY502923

respiratory syndrome-related coronavirus

SARS coronavirus TW11
NC_004718
vertebrates,human
1
Coronaviridae,Betacoronavirus,Severe acute
—
AY502924

respiratory syndrome-related coronavirus

SARS coronavirus TW2
NC_004718
vertebrates,human
1
Coronaviridae,Betacoronavirus,Severe acute
—
AY502925

respiratory syndrome-related coronavirus

SARS coronavirus TW3
NC_004718
vertebrates,human
1
Coronaviridae,Betacoronavirus,Severe acute
—
AY502926

respiratory syndrome-related coronavirus

SARS coronavirus TW4
NC_004718
vertebrates,human
1
Coronaviridae,Betacoronavirus,Severe acute
—
AY502927

respiratory syndrome-related coronavirus

SARS coronavirus TW5
NC_004718
vertebrates,human
1
Coronaviridae,Betacoronavirus,Severe acute
—
AY502928

respiratory syndrome-related coronavirus

SARS coronavirus TW6
NC_004718
vertebrates,human
1
Coronaviridae,Betacoronavirus,Severe acute
—
AY502929

respiratory syndrome-related coronavirus

SARS coronavirus TW7
NC_004718
vertebrates,human
1
Coronaviridae,Betacoronavirus,Severe acute
—
AY502930

respiratory syndrome-related coronavirus

SARS coronavirus TW8
NC_004718
vertebrates,human
1
Coronaviridae,Betacoronavirus,Severe acute
—
AY502931

respiratory syndrome-related coronavirus

SARS coronavirus TW9
NC_004718
vertebrates,human
1
Coronaviridae,Betacoronavirus,Severe acute
—
AY502932

respiratory syndrome-related coronavirus

SARS coronavirus TWC
NC_004718
vertebrates,human
1
Coronaviridae,Betacoronavirus,Severe acute
—
AY321118

respiratory syndrome-related coronavirus

SARS coronavirus TWC2
NC_004718
vertebrates,human
1
Coronaviridae,Betacoronavirus,Severe acute
—
AY362698

respiratory syndrome-related coronavirus

SARS coronavirus TWC3
NC_004718
vertebrates,human
1
Coronaviridae,Betacoronavirus,Severe acute
—
AY362699

respiratory syndrome-related coronavirus

SARS coronavirus TWH
NC_004718
vertebrates,human
1
Coronaviridae,Betacoronavirus,Severe acute
—
AP006557

respiratory syndrome-related coronavirus

SARS coronavirus TWJ
NC_004718
vertebrates,human
1
Coronaviridae,Betacoronavirus,Severe acute
—
AP006558

respiratory syndrome-related coronavirus

SARS coronavirus TWK
NC_004718
vertebrates,human
1
Coronaviridae,Betacoronavirus,Severe acute
—
AP006559

respiratory syndrome-related coronavirus

SARS coronavirus TWS
NC_004718
vertebrates,human
1
Coronaviridae,Betacoronavirus,Severe acute
—
AP006560

respiratory syndrome-related coronavirus

SARS coronavirus TWY
NC_004718
vertebrates,human
1
Coronaviridae,Betacoronavirus,Severe acute
—
AP006561

respiratory syndrome-related coronavirus

SARS coronavirus Taiwan
NC_004718
vertebrates,human
1
Coronaviridae,Betacoronavirus,Severe acute
—
AY338174

TC1

respiratory syndrome-related coronavirus

SARS coronavirus Taiwan
NC_004718
vertebrates,human
1
Coronaviridae,Betacoronavirus,Severe acute
—
AY338175

TC2

respiratory syndrome-related coronavirus

SARS coronavirus Taiwan
NC_004718
vertebrates,human
1
Coronaviridae,Betacoronavirus,Severe acute
—
AY348314

TC3

respiratory syndrome-related coronavirus

SARS coronavirus Urbani
NC_004718
vertebrates,human
1
Coronaviridae,Betacoronavirus,Severe acute
—
AY278741

respiratory syndrome-related coronavirus

SARS coronavirus W H20
NC_004718
vertebrates,human
1
Coronaviridae,Betacoronavirus,Severe acute
—
AY772062

respiratory syndrome-related coronavirus

SARS coronavirus W HU
NC_004718
vertebrates,human
1
Coronaviridae,Betacoronavirus,Severe acute
—
AY394850

respiratory syndrome-related coronavirus

SARS coronavirus ZJO1
NC_004718
vertebrates,human
1
Coronaviridae,Betacoronavirus,Severe acute
—
AY297028

respiratory syndrome-related coronavirus

SARS coronavirus ZJO2
NC_004718
vertebrates,human
1
Coronaviridae,Betacoronavirus,Severe acute
—
EU371559

respiratory syndrome-related coronavirus

SARS coronavirus ZJO301
NC_004718
vertebrates,human
1
Coronaviridae,Betacoronavirus,Severe acute
—
DQ182595

respiratory syndrome-related coronavirus

SARS coronavirus ZMY 1
NC_004718
vertebrates,human
1
Coronaviridae,Betacoronavirus,Severe acute
—
AY351680

respiratory syndrome-related coronavirus

SARS coronavirus ZS-A
NC_004718
vertebrates,human
1
Coronaviridae,Betacoronavirus,Severe acute
—
AY394997

respiratory syndrome-related coronavirus

SARS coronavirus ZS-B
NC_004718
vertebrates,human
1
Coronaviridae,Betacoronavirus,Severe acute
—
AY394996

respiratory syndrome-related coronavirus

SARS coronavirus ZS-C
NC_004718
vertebrates,human
1
Coronaviridae,Betacoronavirus,Severe acute
—
AY395003

respiratory syndrome-related coronavirus

SARS coronavirus civet010
NC_004718
vertebrates,human
1
Coronaviridae,Betacoronavirus,Severe acute
—
AY572035

respiratory syndrome-related coronavirus

SARS coronavirus civet020
NC_004718
vertebrates,human
1
Coronaviridae,Betacoronavirus,Severe acute
—
AY572038

respiratory syndrome-related coronavirus

SARS coronavirus wtic-MB
NC_004718
vertebrates,human
31
Coronaviridae,Betacoronavirus,Severe acute
—
KF514421,FJ882932,

respiratory syndrome-related coronavirus

FJ882937,KF514413,

KF514400,KF514392,

KF514399,JF292921,

KF514415,FJ882927,

KF514398,KF514408,

KF514419,FJ882938,

KF514423,FJ882934,

KF514418,FJ882939,

KF514396,KF514397,

FJ882936,FJ882949,

FJ882946,FJ882933,

FJ882947,KF514394,

KF514409,KF514422,

KF514388,FJ882935,

KF514404

Sabia virus
NC_006313
vertebrates,human
3
Arenaviridae,Arenavirus,Sabia virus
seg. L
JN801475,AY358026,

AY216506

Sabia virus
NC_006317
vertebrates,human
2
Arenaviridae,Arenavirus,Sabia virus
seg. S
U41071,JN801474

Sapovirus Chanthaburi-
NC_000940
vertebrates,human
1
Caliciviridae,Sapovirus,Sapporo virus
—
AY646854

74/Thailand
,NC_01062

4,NC_0062

69,NC_006

554

Sapovirus
NC_000940
vertebrates,human
1
Caliciviridae,Sapovirus,Sapporo virus
—
DQ058829

Ehime1107/2002/JP
,NC_01062

4,NC_0062

69,NC_006

554

Sapovirus
NC_000940
vertebrates,human
1
Caliciviridae,Sapovirus,Sapporo virus
—
DQ125333

Hu/Angelholm/SW278/200
,NC_01062 an

4/SE
4,NC_0062

69,NC_006

554

Sapovirus
NC_000940
vertebrates,human
1
Caliciviridae,Sapovirus,Sapporo virus
—
DQ125334

Hu/Angelholm/5W314/200
,NC_01062

4/SE
4,NC_0062

69,NC_006

554

Sapovirus
NC_000940
vertebrates,human
1
Caliciviridae,Sapovirus,Sapporo virus
—
AJ249939

Hu/Bristo1/1998/UK
,NC_01062

4,NC_0062

69,NC_006

554

Sapovirus
NC_000940
vertebrates,human
1
Caliciviridae,Sapovirus,Sapporo virus
—
AJ786349

Hu/Chiba/000671/1999/JP
,NC_01062

4,NC_0062

69,NC_006

554

Sapovirus
NC_000940
vertebrates,human
1
Caliciviridae,Sapovirus,Sapporo virus
—
DQ366346

Hu/Ehime1596/1999/JP
, NC_01062

4,NC_0062

69,NC_006

554

Sapovirus
NC_000940
vertebrates,human
1
Caliciviridae,Sapovirus,Sapporo virus
—
DQ366344

Hu/Ehime475/2004/JP
,NC_01062

4,NC_0062

69,NC_006

554

Sapovirus
NC_000940
vertebrates,human
1
Caliciviridae,Sapovirus,Sapporo virus
—
DQ366345

Hu/Ehime643/March
,NC_01062

2000/JP
4,NC_0062

69,NC_006

554

Sapovirus Hu/G I,2/BR-
NC_000940
vertebrates,human
1
Caliciviridae,Sapovirus,Sapporo virus
—
AB614356

DF01/BRA/2009
,NC_01062

4,NC_0062

69,NC_006

554

Sapovirus
NC_000940
vertebrates,human
1
Caliciviridae,Sapovirus,Sapporo virus
—
HM002617

Hu/GI/Sapporo/MT-
,NC_01062

2010/1982
4,NC_0062

69,NC_006

554

Sapovirus Mc114
NC_000940
vertebrates,human
1
Caliciviridae,Sapovirus,Sapporo virus
—
AY237422

,NC_01062

4,NC_0062

69,NC_006

554

Sapovirus Mc2
NC_000940
vertebrates,human
1
Caliciviridae,Sapovirus,Sapporo virus
—
AY237419

,NC_01062

4,NC_0062

69,NC_006

554

Sapovirus N21
NC_000940
vertebrates,human
1
Caliciviridae,Sapovirus,Sapporo virus
—
AY237423

,NC_01062

4,NC_0062

69,NC_006

554

Sapovirus NongKhai-
NC_000940
vertebrates,human
1
Caliciviridae,Sapovirus,Sapporo virus
—
AY646856

24/Thailand
,NC_01062

4,NC_0062

69,NC_006

554

Sapovirus NongKhai-
NC_000940
vertebrates,human
1
Caliciviridae,Sapovirus,Sapporo virus
—
AY646853

50/Thailand
,NC_01062

4,NC_0062

69,NC_006

554

Sapovirus SaKaeo-
NC_000940
vertebrates,human
1
Caliciviridae,Sapovirus,Sapporo virus
—
AY646855

15/Thailand
,NC_01062

4,NC_0062

69,NC_006

554

Sapovirus
NC_000940
vertebrates,human
1
Caliciviridae,Sapovirus,Sapporo virus
—
KF204570

pig/Gansu/CH430/2012/CH
,NC_01062

N
4,NC_0062

69,NC_006

554

Sapovirus
NC_000940
vertebrates,human
1
Caliciviridae,Sapovirus,Sapporo virus
—
FJ387164

pig/sav1/2008/CHN
,NC_01062

4,NC_0062

69,NC_006

554

Sapporo rat virus
NC_005236
vertebrates,human
1
Bunyaviridae,Hantavirus,Seoul virus
seg. S
M34881

Sapporo rat virus
NC_005237
vertebrates,human
1
Bunyaviridae,Hantavirus,Seoul virus
seg. M
M34882

Sapporo virus-Manchester
NC_000940
vertebrates,human
1
Caliciviridae,Sapovirus,Sapporo virus
—
X86560

,NC_01062

4,NC_0062

69,NC_006

554

Seal anellovirus
NC_015212
vertebrates,human
1
Anelloviridae,Seal anellovirus
—
HQ287751

TFFN/USA/2006

TFFN/USA/2006

Sendai virus
NC_001552
vertebrates,human
20
Paramyxoviridae,Respirovirus,Sendai virus
—
AB855653,AB005795

,AB005796,AB06518

7,M69046,M30204,D

0219803,AB195967,

AB855655,EF679198,

AB275417,AB065188

,AB855654,AB03965

8,AB195968,AB2754

16,M30203,AB06518

9,AB065186,M30202

Seoul virus
NC_005236
vertebrates,human
13
Bunyaviridae,Hantavirus,Seoul virus
seg. S
AF406965,KC626089

,JX853575,JX879769,

JQ665912,HQ611980

,AY006465,EF192308

,AY766368,AY27379

1,JQ898106,JN37755

3,AY750171

Seoul virus
NC_005237
vertebrates,human
11
Bunyaviridae,Hantavirus,Seoul virus
seg. M
D17593,D17592,547

716,JN377554,JQ665

888,JX853576,D1759

4,DQ159911,JX8797

68,AB027521,EF1172

48

Seoul virus
NC_005238
vertebrates,human
5
Bunyaviridae,Hantavirus,Seoul virus
seg. L
JX879770,EF190551,

X56492,JX853574,EF

581094

Seoul virus 5CSG
NC_005237
vertebrates,human
1
Bunyaviridae,Hantavirus,Seoul virus
seg. M
AB618130

Seoul virus B-1
NC_005237
vertebrates,human
1
Bunyaviridae,Hantavirus,Seoul virus
seg. M
X53861

Seoul virus BjHDQ1
NC_005236
vertebrates,human
1
Bunyaviridae,Hantavirus,Seoul virus
seg. S
AY627049

Seoul virus BjHDQ1
NC_005237
vertebrates,human
1
Bunyaviridae,Hantavirus,Seoul virus
seg. M
DQ133505

Seoul virus CSG5
NC_005236
vertebrates,human
1
Bunyaviridae,Hantavirus,Seoul virus
seg. S
AB618112

Seoul virus Gou3-e5
NC_005237
vertebrates,human
1
Bunyaviridae,Hantavirus,Seoul virus
seg. M
AF288650

Seoul virus Hb8610
NC_005236
vertebrates,human
1
Bunyaviridae,Hantavirus,Seoul virus
seg. S
AF288643

Seoul virus K24-e7
NC_005236
vertebrates,human
1
Bunyaviridae,Hantavirus,Seoul virus
seg. S
AF288653

Seoul virus K24-e7
NC_005237
vertebrates,human
1
Bunyaviridae,Hantavirus,Seoul virus
seg. M
AF288652

Seoul virus K24-v2
NC_005236
vertebrates,human
1
Bunyaviridae,Hantavirus,Seoul virus
seg. S
AF288655

Seoul virus K24-v2
NC_005237
vertebrates,human
1
Bunyaviridae,Hantavirus,Seoul virus
seg. M
AF288654

Seoulvirus Gou3
NC_005236
vertebrates,human
1
Bunyaviridae,Hantavirus,Seoul virus
seg. S
AF184988

Seoulvirus Gou3
NC_005237
vertebrates,human
1
Bunyaviridae,Hantavirus,Seoul virus
seg. M
AF145977

Seoulvirus HB55
NC_005237
vertebrates,human
1
Bunyaviridae,Hantavirus,Seoul virus
seg. M
AF035832

Seoulvirus IR461
NC_005236
vertebrates,human
1
Bunyaviridae,Hantavirus,Seoul virus
seg. S
AF329388

Seoulvirus IR461
NC_005237
vertebrates,human
1
Bunyaviridae,Hantavirus,Seoul virus
seg. M
AF458104

Seoulvirus L99
NC_005236
vertebrates,human
1
Bunyaviridae,Hantavirus,Seoul virus
seg. S
AF288299

Seoulvirus L99
NC_005237
vertebrates,human
2
Bunyaviridae,Hantavirus,Seoul virus
seg. M
AF288298,AF035833

Seoulvirus L99
NC_005238
vertebrates,human
1
Bunyaviridae,Hantavirus,Seoul virus
seg. L
AF288297

Seoulvirus R22
NC_005236
vertebrates,human
2
Bunyaviridae,Hantavirus,Seoul virus
seg. S
AF488707,AF288295

Seoulvirus tchoupitoulas
NC_005236
vertebrates,human
1
Bunyaviridae,Hantavirus,Seoul virus
seg. S
AF329389

Simian Agent 10
NC_001796
vertebrates,human
1
Paramyxoviridae,Respirovirus,Human
—
HM583801

parainfluenza virus 3

Simian adenovirus 27,1
NC_011202
vertebrates,human
1
Adenoviridae,Mastadenovirus,Human
—
FJQ25909

adenovirus B

Simian adenovirus 27,1
NC_011203
vertebrates,human
1
Adenoviridae,Mastadenovirus,Human
—
FJQ25909

adenovirus B

Simian adenovirus 27,2
NC_011202
vertebrates,human
1
Adenoviridae,Mastadenovirus,Human
—
FJQ25928

adenovirus B

Simian adenovirus 27,2
NC_011203
vertebrates,human
1
Adenoviridae,Mastadenovirus,Human
—
FJQ25928

adenovirus B

Simian adenovirus 28,1
NC_011202
vertebrates,human
1
Adenoviridae,Mastadenovirus,Human
—
FJQ25914

adenovirus B

Simian adenovirus 28,1
NC_011203
vertebrates,human
1
Adenoviridae,Mastadenovirus,Human
—
FJQ25914

adenovirus B

Simian adenovirus 28,2
NC_011202
vertebrates,human
1
Adenoviridae,Mastadenovirus,Human
—
FJQ25915

adenovirus B

Simian adenovirus 28,2
NC_011203
vertebrates,human
1
Adenoviridae,Mastadenovirus,Human
—
FJQ25915

adenovirus B

Simian adenovirus 29
NC_011202
vertebrates,human
1
Adenoviridae,Mastadenovirus,Human
—
FJQ25916

adenovirus B

Simian adenovirus 29
NC_011203
vertebrates,human
1
Adenoviridae,Mastadenovirus,Human
—
FJQ25916

adenovirus B

Simian adenovirus 31,1
NC_001405
vertebrates,human
1
Adenoviridae,Mastadenovirus,Human
—
FJQ25906

adenovirus C

Simian adenovirus 31,2
NC_001405
vertebrates,human
1
Adenoviridae,Mastadenovirus,Human
—
FJQ25904

adenovirus C

Simian adenovirus 32
NC_011202
vertebrates,human
1
Adenoviridae,Mastadenovirus,Human
—
FJQ25911

adenovirus B

Simian adenovirus 32
NC_011203
vertebrates,human
1
Adenoviridae,Mastadenovirus,Human
—
FJQ25911

adenovirus B

Simian adenovirus 33
NC_011202
vertebrates,human
1
Adenoviridae,Mastadenovirus,Human
—
FJQ25908

adenovirus B

Simian adenovirus 33
NC_011203
vertebrates,human
1
Adenoviridae,Mastadenovirus,Human
—
FJQ25908

adenovirus B

Simian adenovirus 34
NC_001405
vertebrates,human
1
Adenoviridae,Mastadenovirus,Human
—
FJQ25905

adenovirus C

Simian adenovirus 35,1
NC_011202
vertebrates,human
1
Adenoviridae,Mastadenovirus,Human
—
FJQ25912

adenovirus B

Simian adenovirus 35,1
NC_011203
vertebrates,human
1
Adenoviridae,Mastadenovirus,Human
—
FJQ25912

adenovirus B

Simian adenovirus 35,2
NC_011202
vertebrates,human
1
Adenoviridae,Mastadenovirus,Human
—
FJQ25910

adenovirus B

Simian adenovirus 35,2
NC_011203
vertebrates,human
1
Adenoviridae,Mastadenovirus,Human
—
FJQ25910

adenovirus B

Simian adenovirus 40,1
NC_001405
vertebrates,human
1
Adenoviridae,Mastadenovirus,Human
—
FJQ25907

adenovirus C

Simian adenovirus 40,2
NC_001405
vertebrates,human
1
Adenoviridae,Mastadenovirus,Human
—
FJQ25926

adenovirus C

Simian adenovirus 41,1
NC_011202
vertebrates,human
1
Adenoviridae,Mastadenovirus,Human
—
FJQ25913

adenovirus B

Simian adenovirus 41,1
NC_011203
vertebrates,human
1
Adenoviridae,Mastadenovirus,Human
—
FJQ25913

adenovirus B

Simian adenovirus 41,2
NC_011202
vertebrates,human
1
Adenoviridae,Mastadenovirus,Human
—
FJQ25927

adenovirus B

Simian adenovirus 41,2
NC_011203
vertebrates,human
1
Adenoviridae,Mastadenovirus,Human
—
FJQ25927

adenovirus B

Simian adenovirus 42,1
NC_001405
vertebrates,human
1
Adenoviridae,Mastadenovirus,Human
—
FJQ25903

adenovirus C

Simian adenovirus 42,2
NC_001405
vertebrates,human
1
Adenoviridae,Mastadenovirus,Human
—
FJQ25902

adenovirus C

Simian adenovirus 42,3
NC_001405
vertebrates,human
1
Adenoviridae,Mastadenovirus,Human
—
FJQ25925

adenovirus C

Simian adenovirus 43
NC_001405
vertebrates,human
1
Adenoviridae,Mastadenovirus,Human
—
FJQ25900

adenovirus C

Simian adenovirus 44
NC_001405
vertebrates,human
1
Adenoviridae,Mastadenovirus,Human
—
FJQ25899

adenovirus C

Simian adenovirus 45
NC_001405
vertebrates,human
1
Adenoviridae,Mastadenovirus,Human
—
FJQ25901

adenovirus C

Simian adenovirus 46
NC_011202
vertebrates,human
1
Adenoviridae,Mastadenovirus,Human
—
FJQ25930

adenovirus B

Simian adenovirus 46
NC_011203
vertebrates,human
1
Adenoviridae,Mastadenovirus,Human
—
FJQ25930

adenovirus B

Simian adenovirus 47
NC_011202
vertebrates,human
1
Adenoviridae,Mastadenovirus,Human
—
FJQ25929

adenovirus B

Simian adenovirus 47
NC_011203
vertebrates,human
1
Adenoviridae,Mastadenovirus,Human
—
FJQ25929

adenovirus B

Simian agents
NC_001472
vertebrates,human
1
Picornaviridae,Enterovirus,Enterovirus B
—
AF326751

Simian enterovirus 19
NC_001612
vertebrates,human
1
Picornaviridae,Enterovirus,Enterovirus A
—
AF326754

Simian enterovirus 43
NC_001612
vertebrates,human
1
Picornaviridae,Enterovirus,Enterovirus A
—
AF326761

Simian enterovirus 46
NC_001612
vertebrates,human
2
Picornaviridae,Enterovirus,Enterovirus A
—
EF667343,AF326764

Simian rotavirus
NC_011500
vertebrates,human
6
Reoviridae,Rotavirus,Rotavirus A
seg. 5
AF290884,AF290883,

AF290882,Z32535,AF

290881,FJ422135

Simian rotavirus
NC_011501
vertebrates,human
2
Reoviridae,Rotavirus,Rotavirus A
seg. 7
GU550506,FJ422137

Simian rotavirus
NC_011502
vertebrates,human
2
Reoviridae,Rotavirus,Rotavirus A
seg. 8
X81426,FJ422138

Simian rotavirus
NC_011503
vertebrates,human
4
Reoviridae,Rotavirus,Rotavirus A
seg. 9
X66158,V01546,V011

90,FJ422139

Simian rotavirus
NC_011504
vertebrates,human
2
Reoviridae,Rotavirus,Rotavirus A
seg.
FJ422140,L41247

10

Simian rotavirus
NC_011505
vertebrates,human
4
Reoviridae,Rotavirus,Rotavirus A
seg.
AF306493,XQ7831,FJ

11
422141,M28347

Simian rotavirus
NC_011506
vertebrates,human
3
Reoviridae,Rotavirus,Rotavirus A
seg. 2
AF474406,L33364,FJ

422132

Simian rotavirus
NC_011507
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 1
FJ422131

Simian rotavirus
NC_011508
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 3
FJ422133

Simian rotavirus
NC_011509
vertebrates,human
5
Reoviridae,Rotavirus,Rotavirus A
seg. 6
L15384,FJ422136,L3

3365,XQ0421,M27824

Simian rotavirus
NC_011510
vertebrates,human
5
Reoviridae,Rotavirus,Rotavirus A
seg. 4
M23188,FJ422134,D

4

16345,D16346,X1420

Simian rotavirus A strain
NC_011506
vertebrates,human
2
Reoviridae,Rotavirus,Rotavirus A
seg. 2
EF583007,EU636925

RRV

Simian rotavirus A strain
NC_011507
vertebrates,human
2
Reoviridae,Rotavirus,Rotavirus A
seg. 1
EU636924,EF583006

RRV

Simian rotavirus A strain
NC_011508
vertebrates,human
2
Reoviridae,Rotavirus,Rotavirus A
seg. 3
EU636926,EF583008

RRV

Simian rotavirus A strain
NC_011509
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 6
EF583009

RRV

Simian rotavirus A strain
NC_011500
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 5
FJ816612

TUCH

Simian rotavirus A strain
NC_011501
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 7
FJ816613

TUCH

Simian rotavirus A strain
NC_011502
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 8
FJ816614

TUCH

Simian rotavirus A strain
NC_011503
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 9
FJ816615

TUCH

Simian rotavirus A strain
NC_011504
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg.
FJ816616

TUCH

10

Simian rotavirus A strain
NC_011505
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg.
FJ816617

TUCH

11

Simian rotavirus A strain
NC_011506
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 2
EF583011

TUCH

Simian rotavirus A strain
NC_011507
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 1
EF583010

TUCH

Simian rotavirus A strain
NC_011508
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 3
EF583012

TUCH

Simian rotavirus A strain
NC_011509
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 6
EF583013

TUCH

Simian rotavirus A strain
NC_011510
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 4
FJ816611

TUCH

Simian rotavirus A/SA11
NC_011500
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 5
X14914

Simian rotavirus A/SA11
NC_011501
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 7
JQ2353

Simian rotavirus A/SA11
NC_011502
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 8
XQ0355

Simian rotavirus A/SA11
NC_011504
vertebrates,human
2
Reoviridae,Rotavirus,Rotavirus A
seg.
AF087678,K01138

10

Simian rotavirus A/SA11
NC_011506
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 2
X16831

Simian rotavirus A/SA11
NC_011507
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 1
X16830

Simian rotavirus A/SA11
NC_011508
vertebrates,human
2
Reoviridae,Rotavirus,Rotavirus A
seg. 3
X16062,X16387

Simian rotavirus A/SA11
NC_011509
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 6
AY187029

Simian rotavirus A/SA11
NC_011510
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 4
Y00336

Simian rotavirus A/SA11-
NC_011502
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 8
AY065843

C14

Simian rotavirus A/SA11-L2
NC_011502
vertebrates,human
1
Reoviridae,Rotavirus,Rotavirus A
seg. 8
EF460843

Simian virus 40
NC_001669
vertebrates,human
35
Polyomaviridae,Polyomavirus,Simian virus 40
seg. 8
EF579662,EF579804,

AY271816,EF579661,

FN812745,AF155358,

AF156105,AY120890,

AF345345,JQ2400,AF

316141,EF579665,AF

345344,EF579663,AF

316140,EF579664,AF

156107,EF579659,AY

538779,EF579660,AF

180737,EF579667,AY

271817,AF156108,AF

332562,DQ660375,E

F579658,EF579666,A

F332699,DQ218418,

EF579803,AF155359,

AF316139,AF168994,

AF038616

Simian virus 41
NC_006428
vertebrates,human
1
Paramyxoviridae,Rubulavirus,Simian virus 41
—
X64275

Sin Nombre virus
NC_005215
vertebrates,human
6
Bunyaviridae,Hantavirus,Sin Nombre virus
seg. M
JQ690283,JQ690280,

JQ690279,JQ690284,

L25783, L37903

Sin Nombre virus
NC_005216
vertebrates,human
8
Bunyaviridae,Hantavirus,Sin Nombre virus
seg. S
L25784,JQ690281,JQ

690277,JQ690282,JQ

690278,JQ690276,AF

281851,L37904

Sin Nombre virus
NC_005217
vertebrates,human
2
Bunyaviridae,Hantavirus,Sin Nombre virus
seg. L
L37902,L37901

Small anellovirus 2
NC_007014
vertebrates,human
1
Anelloviridae,Small anellovirus
—
AY622909

,NC_00701

3

Snow Mountain virus
NC_001959
vertebrates,human
1
Caliciviridae,Norovirus,Norwalk virus
—
AY134748

Southampton virus
NC_001959
vertebrates,human
1
Caliciviridae,Norovirus,Norwalk virus
—
L07418

Sudan ebolavirus
NC_006432
vertebrates,human
9
Filoviridae,Ebolavirus,Sudan ebolavirus
—
KC545391,EU338380

,KC589025,KC24278

3,FJ968794,KC54539

0,AY729654,KC5453

89,KC545392

Sudan ebolavirus-
NC_006432
vertebrates,human
1
Filoviridae,Ebolavirus,Sudan ebolavirus
—
JN638998

Nakisamata

Swine hepatitis E virus
NC_001434
vertebrates,human
26
Hepeviridae,Hepevirus,Hepatitis E virus
—
GU361892,FJ998008,

GU188851,AB481228

,EU723514,AY59419

9,GU119961,FJ61023

2,GU119960,KF1763

51,AB097811,AB073

912,AB481227,EU72

3512,EU676172,EU7

23515,AY115488,EU

723513,AF082843,D

0279091,FJ426403,F

J426404,AB481229,J

X855794,EU723516,

AB481226

Swine vesicular disease
NC_001472
vertebrates,human
4
Picornaviridae,Enterovirus,Enterovirus B
—
AY429470,AF268065,

virus

D16364,X54521

Swine vesicular disease
NC_001472
vertebrates,human
1
Picornaviridae,Enterovirus,Enterovirus B
—
DQ0435

virus (STRAIN H/3 '76)

TT virus 51e1931
NC_015783
vertebrates,human
1
Anelloviridae,Torque teno virus
—
AM712003

TT virus 51e1932
NC_015783
vertebrates,human
1
Anelloviridae,Torque teno virus
—
AM712004

TT virus 51e1957
NC_015783
vertebrates,human
1
Anelloviridae,Torque teno virus
—
AM711976

TT virus 51e2057
NC_015783
vertebrates,human
1
Anelloviridae,Torque teno virus
—
AM712030

TT virus 51e2058
NC_015783
vertebrates,human
1
Anelloviridae,Torque teno virus
—
AM712031

TT virus 51e2061
NC_015783
vertebrates,human
1
Anelloviridae,Torque teno virus
—
AM712033

TT virus 51e2065
NC_015783
vertebrates,human
1
Anelloviridae,Torque teno virus
—
AM712034

TT virus 51e2072
NC_015783
vertebrates,human
1
Anelloviridae,Torque teno virus
—
AM712032

TTV-Iike mini virus
NC_020498
vertebrates,human
8
Anelloviridae,TTV-Iike mini virus
—
KF764702,JX134046,

AB026930,JX134044,

AB038628,AB038626

,KF764701,JX134045

Tacaribe virus
NC_004292
vertebrates,human
1
Arenaviridae,Arenavirus,Tacaribe virus
seg. L
JQ4340

Tacaribe virus
NC_004293
vertebrates,human
1
Arenaviridae,Arenavirus,Tacaribe virus
seg. S
M20304

Tamiami virus
NC_010701
vertebrates,human
3
Arenaviridae,Arenavirus,Tamiami virus
seg. S
AF512828,AF485263,

EU486821

Tamiami virus
NC_010702
vertebrates,human
2
Arenaviridae,Arenavirus,Tamiami virus
seg. L
AY924393,EU627614

Thottapalayam virus
NC_010704
vertebrates,human
1
Bunyaviridae,Hantavirus,Thottapalayam virus
seg. S
AY526097

Thottapalayam virus
NC_010707
vertebrates,human
2
Bunyaviridae,Hantavirus,Thottapalayam virus
seg. L
EU001330,DQ825770

Thottapalayam virus
NC_010708
vertebrates,human
2
Bunyaviridae,Hantavirus,Thottapalayam virus
seg. M
EU001329,DQ825771

Tioman virus
NC_004074
vertebrates,human
1
Paramyxoviridae,Rubulavirus,Tioman virus
—
AF298895

Torque teno canis virus
NC_014071
vertebrates,human
3
Anelloviridae,Thetatorquevirus,Torque teno
—
AB076002,GU951508

canis virus

,HM855265

Torque teno douroucouli
NC_014087
vertebrates,human
1
Anelloviridae,Zetatorquevirus,Torque teno
—
AB041961

virus

douroucouli virus

Torque teno felis virus
NC_014072
vertebrates,human
3
Anelloviridae,Etatorquevirus,Torque teno felis
—
HM142589,HM14258

virus

8,AB076003

Torque teno midi virus 1
NC_009225
vertebrates,human
2
Anelloviridae,Gammatorquevirus,Torque teno
—
AB290918,AB290917

midi virus 1

Torque teno midi virus 2
NC_014093
vertebrates,human
1
Anelloviridae,Gammatorquevirus,Torque teno
—
AB290919

midi virus 2

Torque teno mini virus 1
NC_014097
vertebrates,human
1
Anelloviridae,Betatorquevirus,Torque teno
—
AB026931

mini virus 1

Torque teno mini virus 2
NC_014086
vertebrates,human
1
Anelloviridae,Betatorquevirus,Torque teno
—
AB038629

mini virus 2

Torque teno mini virus 3
NC_014088
vertebrates,human
1
Anelloviridae,Betatorquevirus,Torque teno
—
AB038630

mini virus 3

Torque teno mini virus 4
NC_014090
vertebrates,human
1
Anelloviridae,Betatorquevirus,Torque teno
—
AB041963

mini virus 4

Torque teno mini virus 5
NC_014089
vertebrates,human
1
Anelloviridae,Betatorquevirus,Torque teno
—
AB041962

mini virus 5

Torque teno mini virus 6
NC_014095
vertebrates,human
1
Anelloviridae,Betatorquevirus,Torque teno
—
AB026929

mini virus 6

Torque teno mini virus 7
NC_014082
vertebrates,human
1
Anelloviridae,Betatorquevirus,Torque teno
—
AB038627

mini virus 7

Torque teno mini virus 8
NC_014068
vertebrates,human
1
Anelloviridae,Betatorquevirus,Torque teno
—
AF291073

mini virus 8

Torque teno mini virus 9
NC_002195
vertebrates,human
2
Anelloviridae,Betatorquevirus,Torque teno
—
AB038631,AB038625

mini virus 9

Torque teno sus virus 1
NC_014070
vertebrates,human
13
Anelloviridae,lotatorquevirus,Torque teno sus
—
HM633256,AB076001

virus 1a

,JF937662,JF937660,

JF937661,HM633251

,JN688927,AY823990

,JF694117,HM63324

9,HM633245,HM6332

43,JF694116

Torque teno sus virus la
NC_014070
vertebrates,human
3
Anelloviridae,lotatorquevirus,Torque teno sus
—
JX535326,JX535327,

virus la

JQ933527

Torque teno sus virus k2
NC_014092
vertebrates,human
1
Anelloviridae,Kappatorquevirus,Torque teno
—
AY823991

sus virus k2

Torque teno sus virus k2b
NC_014092
vertebrates,human
3
Anelloviridae,Kappatorquevirus,Torque teno
—
JQ406846,JQ406844,

sus virus k2

JQ406845

Torque teno tamarin virus
NC_014085
vertebrates,human
1
Anelloviridae,Epsilontorquevirus,Torque teno
—
AB041960

tamarin virus

Torque teno virus
NC_014070
vertebrates,human
4
Anelloviridae,lotatorquevirus,Torque teno sus
—
GQ120664,GU45638

virus la

3,GU456384,GU1880

45

Torque teno virus
NC_015783
vertebrates,human
114
Anelloviridae,Torque teno virus
—
AF351132,FR751478,

AF247138,FR751507,

FR751483,FR751485

,FR751472,AJ620233

,FR751470,AB02866

9,AB064603,FR7515

06,AF122915,FR7514

71,AB064597,FR751

463,AJ620216,FR751

495,AY823989,FR84

8325,AB054648,AF12

2916,AJ620228,AJ62

0212,FR848327,FR7

51479,FR751500,AF1

22914,AJ620224,FR7

51477,AJ620235,AB0

64599,FR751465,FR

751491,FR848323,F

R751502,AB017610,

FR751504,AB064606

,AJ620218,FR751493

,AJ620227,AF122917

,AJ620231,FR751480

,DQ003344,FR75147

5,AY823988,FR7514

69,AJ620219,AB0386

19,AF116842,FR7514

68,FR751490,FR751

501,AB064602,AJ620

221,AF298585,AJ620

226,AB038620,FR75

1503,FR751509,FR7

51481,AJ620214,FR7

51497,DQ003341,DO

003343,FR751476,AJ

620232,AJ620230,FR

751487,AJ620229,AB

064600,AF247137,AF

122921,FR751492,AF

122918,FR751508,AF

122920,FJ426280,FR

751484,AF122913,FR

751511,FR751489,F

R751496,AJ620234,A

F079173,FR751482,F

R751494,AB064601,

AB064596,AJ620223,

AJ620225,FR751510,

FR751486,AF129887,

AJ620213,DQ003342

,AJ620220,FR751473

,FR848324,AJ620222

,FR751505,FR75146

6,FR848326,FR7514

74,AB064604,FR751

498,FR751467,AJ620

215,AJ620217,FR751

464,FR751488,FR75

1499

Torque teno virus 1
NC_002076
vertebrates,human
2
Anelloviridae,Alphatorquevirus,Torque teno
—
AB041007,AB008394

virus 1

Torque teno virus 1
NC_014070
vertebrates,human
5
Anelloviridae,lotatorquevirus,Torque teno sus
—
GU570202,GU57019

virus 1a

8,GU570201,GU5701

99,GU570200

Torque teno virus 10
NC_014076
vertebrates,human
2
Anelloviridae,Alphatorquevirus,Torque teno
—
AB064607,GU797360

virus 10

Torque teno virus 12
NC_014075
vertebrates,human
1
Anelloviridae,Alphatorquevirus,Torque teno
—
AB064605

virus 12

Torque teno virus 14
NC_014077
vertebrates,human
1
Anelloviridae,Alphatorquevirus,Torque teno
—
AB037926

virus 14

Torque teno virus 15
NC_014096
vertebrates,human
1
Anelloviridae,Alphatorquevirus,Torque teno
—
AB028668

virus 15

Torque teno virus 16
NC_014091
vertebrates,human
1
Anelloviridae,Alphatorquevirus,Torque teno
—
AB017613

virus 16

Torque teno virus 19
NC_014078
vertebrates,human
1
Anelloviridae,Alphatorquevirus,Torque teno
—
AB025946

virus 19

Torque teno virus 2
NC_014480
vertebrates,human
1
Anelloviridae,Alphatorquevirus,Torque teno
—
AB049608

virus 2

Torque teno virus 25
NC_014083
vertebrates,human
1
Anelloviridae,Alphatorquevirus,Torque teno
—
AB041959

virus 25

Torque teno virus 26
NC_014079
vertebrates,human
1
Anelloviridae,Alphatorquevirus,Torque teno
—
AB041958

virus 26

Torque teno virus 27
NC_014074
vertebrates,human
1
Anelloviridae,Alphatorquevirus,Torque teno
—
AB064595

virus 27

Torque teno virus 28
NC_014073
vertebrates,human
1
Anelloviridae,Alphatorquevirus,Torque teno
—
AB064598

virus 28

Torque teno virus 3
NC_014081
vertebrates,human
1
Anelloviridae,Alphatorquevirus,Torque teno
—
AY666122

virus 3

Torque teno virus 4
NC_014069
vertebrates,human
1
Anelloviridae,Alphatorquevirus,Torque teno
—
AB041957

virus 4

Torque teno virus 6
NC_014094
vertebrates,human
1
Anelloviridae,Alphatorquevirus,Torque teno
—
AF435014

virus 6

Torque teno virus 7
NC_014080
vertebrates,human
1
Anelloviridae,Alphatorquevirus,Torque teno
—
AF261761

virus 7

Torque teno virus 8
NC_014084
vertebrates,human
1
Anelloviridae,Alphatorquevirus,Torque teno
—
AB054647

virus 8

Torque teno zalophus virus
NC_012126
vertebrates,human
1
Anelloviridae,Lambdatorquevirus,Torque teno
—
FJ459582

1

zalophus virus 1

Tula virus
NC_005226
vertebrates,human
1
Bunyaviridae,Hantavirus,Tula virus
seg. L
AJQ05637

Tula virus
NC_005227
vertebrates,human
18
Bunyaviridae,Hantavirus,Tula virus
seg. S
AM945877,Z30945,A

J223600,AF164093,Z

30942,AF017659,Z30

943,Z30944,Y13980,

AF164094,AJ223601,

AF442621,Z48573,Y1

3979,Z30941,Z48741,

Z48574,Z49915

Bluetongue virus 1
NC_006014
vertebrates,invertebrates
11
Reoviridae,Orbivirus,Bluetongue virus
seg. 3
DQ186807,JN848761

,JN881987,DQ18682

2,DQ186811,AF5290

48,DQ186818,AF529

044,DQ186816,DQ18

6792,DQ186820

NC_006015
vertebrates,invertebrates
13
Reoviridae,Orbivirus,Bluetongue virus
seg.
AF512912,JX272388,

10
AF512911,JN848768,

KJQ19214,KC879624,

AF529057,FJ437561,

JN881994,AF135223,

AF529049,AF529052,

AF512910

Bluetongue virus 1
NC_006022
vertebrates,invertebrates
6
Reoviridae,Orbivirus,Bluetongue virus
seg. 7
AY789967,AY776331

,FJ437558,FJ437562,

JN881991,JN848765

Bluetongue virus 1
NC_006023
vertebrates,invertebrates
2
Reoviridae,Orbivirus,Bluetongue virus
seg. 1
JN881985,JN848759

Bluetongue virus 1
NC_006024
vertebrates,invertebrates
2
Reoviridae,Orbivirus,Bluetongue virus
seg. 4
JN881988,JN848762

Bluetongue virus 1
NC_006025
vertebrates,invertebrates
4
Reoviridae,Orbivirus,Bluetongue virus
seg. 5
JN881989,AM778437

,AM778438,JN84876

3

Bluetongue virus 10
NC_006007
vertebrates,invertebrates
1
Reoviridae,Orbivirus,Bluetongue virus
seg. 8
JQ740778

Bluetongue virus 10
NC_006010
vertebrates,invertebrates
3
Reoviridae,Orbivirus,Bluetongue virus
seg. 6
JQ740776,AJ586709,

JN704635

Bluetongue virus 10
NC_006013
vertebrates,invertebrates
2
Reoviridae,Orbivirus,Bluetongue virus
seg. 2
AJ585131,JQ740772

Bluetongue virus 10
NC_006014
vertebrates,invertebrates
1
Reoviridae,Orbivirus,Bluetongue virus
seg. 3
JQ740773

Bluetongue virus 10
NC_006015
vertebrates,invertebrates
2
Reoviridae,Orbivirus,Bluetongue virus
seg.
JQ740780,JX272528

10

Bluetongue virus 10
NC_006022
vertebrates,invertebrates
1
Reoviridae,Orbivirus,Bluetongue virus
seg. 7
JQ740777

Bluetongue virus 10
NC_006023
vertebrates,invertebrates
1
Reoviridae,Orbivirus,Bluetongue virus
seg. 1
JQ740771

Bluetongue virus 10
NC_006024
vertebrates,invertebrates
2
Reoviridae,Orbivirus,Bluetongue virus
seg. 4
L13726,JQ740774

Bluetongue virus 10
NC_006025
vertebrates,invertebrates
1
Reoviridae,Orbivirus,Bluetongue virus
seg. 5
JQ740775

Bluetongue virus 11
NC_006007
vertebrates,invertebrates
4
Reoviridae,Orbivirus,Bluetongue virus
seg. 8
JQ972838,JQ972858,

JQ972868,JQ972848

Bluetongue virus 11
NC_006008
vertebrates,invertebrates
4
Reoviridae,Orbivirus,Bluetongue virus
seg. 9
JQ972869,JQ972859,

JQ972849,JQ972839

Bluetongue virus 11
NC_006010
vertebrates,invertebrates
5
Reoviridae,Orbivirus,Bluetongue virus
seg. 6
JQ972866,JQ972856,

JQ972846,JQ972836,

AJ586710

Bluetongue virus 11
NC_006013
vertebrates,invertebrates
5
Reoviridae,Orbivirus,Bluetongue virus
seg. 2
AJ585132,JQ972832,

JQ972862,JQ972852,

JQ972842

Bluetongue virus 11
NC_006014
vertebrates,invertebrates
5
Reoviridae,Orbivirus,Bluetongue virus
seg. 3
L19968,JQ972833,JQ

972853,JQ972843,JQ

972863

Bluetongue virus 11
NC_006015
vertebrates,invertebrates
8
Reoviridae,Orbivirus,Bluetongue virus
seg.
JQ972870,AF512923,

10
JX272518,JQ972860,

AF512921,JQ972850,

JQ972840,AF512922

Bluetongue virus 11
NC_006022
vertebrates,invertebrates
4
Reoviridae,Orbivirus,Bluetongue virus
seg. 7
JQ972847,JQ972867,

JQ972837,JQ972857

Bluetongue virus 11
NC_006023
vertebrates,invertebrates
5
Reoviridae,Orbivirus,Bluetongue virus
seg. 1
JQ972841,L20445,JQ

972831,JQ972851,JQ

972861

Bluetongue virus 11
NC_006024
vertebrates,invertebrates
5
Reoviridae,Orbivirus,Bluetongue virus
seg. 4
JQ972854,JQ972864,

JQ972844,JQ972834,

L08638

Bluetongue virus 11
NC_006025
vertebrates,invertebrates
5
Reoviridae,Orbivirus,Bluetongue virus
seg. 5
JQ972835,M97681,J

0972865,JQ972845,J

0972855

Bluetongue virus 12
NC_006010
vertebrates,invertebrates
2
Reoviridae,Orbivirus,Bluetongue virus
seg. 6
AJ586711,AJ586712

Bluetongue virus 12
NC_006015
vertebrates,invertebrates
3
Reoviridae,Orbivirus,Bluetongue virus
seg.
KC662621,JX272508,

10
AF135227

Bluetongue virus 13
NC_006007
vertebrates,invertebrates
1
Reoviridae,Orbivirus,Bluetongue virus
seg. 8
AY855289

Bluetongue virus 13
NC_006010
vertebrates,invertebrates
2
Reoviridae,Orbivirus,Bluetongue virus
seg. 6
AY855280,AJ586713

Bluetongue virus 13
NC_006013
vertebrates,invertebrates
2
Reoviridae,Orbivirus,Bluetongue virus
seg. 2
L11874,L11741

Bluetongue virus 13
NC_006014
vertebrates,invertebrates
1
Reoviridae,Orbivirus,Bluetongue virus
seg. 3
L19969

Bluetongue virus 13
NC_006015
vertebrates,invertebrates
1
Reoviridae,Orbivirus,Bluetongue virus
seg.
JX272498

10

Bluetongue virus 13
NC_006022
vertebrates,invertebrates
1
Reoviridae,Orbivirus,Bluetongue virus
seg. 7
AY855283

Bluetongue virus 13
NC_006023
vertebrates,invertebrates
2
Reoviridae,Orbivirus,Bluetongue virus
seg. 1
L20446,JX272489

Bluetongue virus 13
NC_006024
vertebrates,invertebrates
2
Reoviridae,Orbivirus,Bluetongue virus
seg. 4
AY855274,L08640

Bluetongue virus 13
NC_006025
vertebrates,invertebrates
1
Reoviridae,Orbivirus,Bluetongue virus
seg. 5
M97762

Bluetongue virus 14
NC_006010
vertebrates,invertebrates
2
Reoviridae,Orbivirus,Bluetongue virus
seg. 6
AJ586714,AJ586715

Bluetongue virus 14
NC_006015
vertebrates,invertebrates
1
Reoviridae,Orbivirus,Bluetongue virus
seg.
JX272488

10

Bluetongue virus 15
NC_006007
vertebrates,invertebrates
2
Reoviridae,Orbivirus,Bluetongue virus
seg. 8
JQ086228,AM900379

Bluetongue virus 15
NC_006008
vertebrates,invertebrates
1
Reoviridae,Orbivirus,Bluetongue virus
seg. 9
JQ086229

Bluetongue virus 15
NC_006010
vertebrates,invertebrates
4
Reoviridae,Orbivirus,Bluetongue virus
seg. 6
AJ586716,AJ586717,

AJ586718,JQ086226

Bluetongue virus 15
NC_006013
vertebrates,invertebrates
1
Reoviridae,Orbivirus,Bluetongue virus
seg. 2
JQ086222

Bluetongue virus 15
NC_006014
vertebrates,invertebrates
1
Reoviridae,Orbivirus,Bluetongue virus
seg. 3
JQ086223

Bluetongue virus 15
NC_006015
vertebrates,invertebrates
3
Reoviridae,Orbivirus,Bluetongue virus
seg.
AF135228,JX272478,

10
JQ086230

Bluetongue virus 15
NC_006022
vertebrates,invertebrates
2
Reoviridae,Orbivirus,Bluetongue virus
seg. 7
Li1724,JQ086227

Bluetongue virus 15
NC_006023
vertebrates,invertebrates
1
Reoviridae,Orbivirus,Bluetongue virus
seg. 1
JQ086221

Bluetongue virus 15
NC_006024
vertebrates,invertebrates
1
Reoviridae,Orbivirus,Bluetongue virus
seg. 4
JQ086224

Bluetongue virus 15
NC_006025
vertebrates,invertebrates
1
Reoviridae,Orbivirus,Bluetongue virus
seg. 5
JQ086225

Bluetongue virus 16
NC_006007
vertebrates,invertebrates
3
Reoviridae,Orbivirus,Bluetongue virus
seg. 8
JQ086238,AM900386

,JQ924827

Bluetongue virus 16
NC_006008
vertebrates,invertebrates
2
Reoviridae,Orbivirus,Bluetongue virus
seg. 9
JQ086239,JQ924828

Bluetongue virus 16
NC_006010
vertebrates,invertebrates
10
Reoviridae,Orbivirus,Bluetongue virus
seg. 6
AJ586693,AJ586691,

AJ586692,AJ586689,

JQ924825,AJ586694,

JN572918,AJ586690,

AJ586719,JQ086236

Bluetongue virus 16
NC_006013
vertebrates,invertebrates
4
Reoviridae,Orbivirus,Bluetongue virus
seg. 2
JQ086232,DQ191260

,JQ924821,DQ19125

9

Bluetongue virus 16
NC_006014
vertebrates,invertebrates
11
Reoviridae,Orbivirus,Bluetongue virus
seg. 3
DQ186821,DQ18679

8, DQ186828,DQ1868

27, DQ186812,DQ186

814,DQ186819,JQ08

6233,JQ924822,DQ1

86796,DQ186791

Bluetongue virus 16
NC_006015
vertebrates,invertebrates
5
Reoviridae,Orbivirus,Bluetongue virus
seg.
JQ924829,JX272468,

10
KF387530,AF135229,

JQ086240

Bluetongue virus 16
NC_006022
vertebrates,invertebrates
2
Reoviridae,Orbivirus,Bluetongue virus
seg. 7
JQ086237,JQ924826

Bluetongue virus 16
NC_006023
vertebrates,invertebrates
2
Reoviridae,Orbivirus,Bluetongue virus
seg. 1
JQ086231,JQ924820

Bluetongue virus 16
NC_006024
vertebrates,invertebrates
2
Reoviridae,Orbivirus,Bluetongue virus
seg. 4
JQ924823,JQ086234

Bluetongue virus 16
NC_006025
vertebrates,invertebrates
8
Reoviridae,Orbivirus,Bluetongue virus
seg. 5
AM773694,JQ086235

,AM773692,AM77369

6,JQ924824,AM7736

95,KF387525,AM773

693

Bluetongue virus 17
NC_006007
vertebrates,invertebrates
1
Reoviridae,Orbivirus,Bluetongue virus
seg. 8
AY855290

Bluetongue virus 17
NC_006010
vertebrates,invertebrates
8
Reoviridae,Orbivirus,Bluetongue virus
seg. 6
DQ080914,AJ586720

,DQ080913,AY85528

1,DQ080912,DQ0809

10,DQ080911,DQ080

915

Bluetongue virus 17
NC_006013
vertebrates,invertebrates
3
Reoviridae,Orbivirus,Bluetongue virus
seg. 2
AJ585138,AY855269,

S72158

Bluetongue virus 17
NC_006015
vertebrates,invertebrates
1
Reoviridae,Orbivirus,Bluetongue virus
seg.
JX272458

10

Bluetongue virus 17
NC_006022
vertebrates,invertebrates
1
Reoviridae,Orbivirus,Bluetongue virus
seg. 7
AY855284

Bluetongue virus 17
NC_006023
vertebrates,invertebrates
1
Reoviridae,Orbivirus,Bluetongue virus
seg. 1
L20447

Bluetongue virus 17
NC_006024
vertebrates,invertebrates
2
Reoviridae,Orbivirus,Bluetongue virus
seg. 4
L08639,AY855275

Bluetongue virus 18
NC_006010
vertebrates,invertebrates
1
Reoviridae,Orbivirus,Bluetongue virus
seg. 6
AJ586721

Bluetongue virus 18
NC_006015
vertebrates,invertebrates
3
Reoviridae,Orbivirus,Bluetongue virus
seg.
JX272448,AF512915,

10
AF512914

Bluetongue virus 18
NC_006022
vertebrates,invertebrates
1
Reoviridae,Orbivirus,Bluetongue virus
seg. 7
AY606206

10

Bluetongue virus 2
NC_006007
vertebrates,invertebrates
12
Reoviridae,Orbivirus,Bluetongue virus
seg. 8
AM900382,AY855288

,AY138896,JN255879

,JN255869,JQ086248

,JN255939,AY855286

,JN255929,AY855287

,AY855285,JQ240328

Bluetongue virus 2
NC_006008
vertebrates,invertebrates
6
Reoviridae,Orbivirus,Bluetongue virus
seg. 9
JN255880,JN255930,

JN255870,JQ086249,

JN255940,JQ713562

Bluetongue virus 2
NC_006010
vertebrates,invertebrates
27
Reoviridae,Orbivirus,Bluetongue virus
seg. 6
AY129084,AY855277

,AY855279,AJ586674

,JN255877,JN255927

,AJ586673,AJ586669,

AJ586666,AJ586665,

JN255937,AY129083,

AJ586671,AJ586668,

AJ586675,JN255867,

AJ586672,JQ086246,

AJ783906,AY189951,

JQ240326,AJ586670,

AJ586696,AY855276,

AJ586667,AJ783904,

AY855278

Bluetongue virus 2
NC_006013
vertebrates,invertebrates
23
Reoviridae,Orbivirus,Bluetongue virus
seg. 2
DQ191275,JN255873

,DQ191273,JN25592

3,DQ191272,DQ1912

70, M21946,JQ08624

2,JN255933,DQ1912

66,DQ191263,AF481

096,DQ191267,DQ19

1274,DQ191261,DQ1

91265,AF356601,DQ

191264,DQ191271,D

0191268,DQ191262,

JN255863,DQ191269

Bluetongue virus 2
NC_006014
vertebrates,invertebrates
11
Reoviridae,Orbivirus,Bluetongue virus
seg. 3
L19967,JN255864,D

0186826,JN255934,J

N255924,JQ086243,

DQ186815,JN255874

,JQ713558,DQ18679

3,S78452

Bluetongue virus 2
NC_006015
vertebrates,invertebrates
15
Reoviridae,Orbivirus,Bluetongue virus
seg.
AF512913,JN255881,

10
AY438033,AF512916,

AF481094,AF135224,

JN255941,AF135230,

JQ240330,JQ086250,

JQ713563,JN255931,

AF512920,JX272608,

JN255871

Bluetongue virus 2
NC_006022
vertebrates,invertebrates
10
Reoviridae,Orbivirus,Bluetongue virus
seg. 7
JQ086247,M64997,D

0399837,JN255938,J

N255868,JN255878,A

Y855282,JN255928,J

0713561,AF481095

Bluetongue virus 2
NC_006023
vertebrates,invertebrates
8
Reoviridae,Orbivirus,Bluetongue virus
seg. 1
JN255872,JQ713557,

JQ240321,JQ086241,

L20508,JN255922,JN

255932,JN255862

Bluetongue virus 2
NC_006024
vertebrates,invertebrates
14
Reoviridae,Orbivirus,Bluetongue virus
seg. 4
AY855272,AY134477

,AY855271,L08637,J

N255865,JN255875,J

0240324,AY855273,J

N255925,JQ086244,

AY855270,JQ713559,

AY129085,JN255935

Bluetongue virus 2
NC_006025
vertebrates,invertebrates
15
Reoviridae,Orbivirus,Bluetongue virus
seg. 5
AM773687,AY138895

,AM773686,JQ24032

5,JQ086245,JQ71356

0,AM773689,M97680,

AM773685,JN255866

,JN255936,AM77368

4,JN255876,AM7736

88,JN255926

Bluetongue virus 20
NC_006007
vertebrates,invertebrates
2
Reoviridae,Orbivirus,Bluetongue virus
seg. 8
JQ086258,AM900380

Bluetongue virus 20
NC_006008
vertebrates,invertebrates
1
Reoviridae,Orbivirus,Bluetongue virus
seg. 9
JQ086259

Bluetongue virus 20
NC_006010
vertebrates,invertebrates
2
Reoviridae,Orbivirus,Bluetongue virus
seg. 6
AJ586723,JQ086256

Bluetongue virus 20
NC_006013
vertebrates,invertebrates
2
Reoviridae,Orbivirus,Bluetongue virus
seg. 2
JQ086252,AJ585141

Bluetongue virus 20
NC_006014
vertebrates,invertebrates
1
Reoviridae,Orbivirus,Bluetongue virus
seg. 3
JQ086253

Bluetongue virus 20
NC_006015
vertebrates,invertebrates
4
Reoviridae,Orbivirus,Bluetongue virus
seg.
AF529055,JQ086260,

10
AF529056,JX272428

Bluetongue virus 20
NC_006022
vertebrates,invertebrates
1
Reoviridae,Orbivirus,Bluetongue virus
seg. 7
JQ086257

Bluetongue virus 20
NC_006023
vertebrates,invertebrates
1
Reoviridae,Orbivirus,Bluetongue virus
seg. 1
JQ086251

Bluetongue virus 20
NC_006024
vertebrates,invertebrates
1
Reoviridae,Orbivirus,Bluetongue virus
seg. 4
JQ086254

Bluetongue virus 20
NC_006025
vertebrates,invertebrates
1
Reoviridae,Orbivirus,Bluetongue virus
seg. 5
JQ086255

Bluetongue virus 21
NC_006007
vertebrates,invertebrates
2
Reoviridae,Orbivirus,Bluetongue virus
seg. 8
JQ086268,AM900390

Bluetongue virus 21
NC_006008
vertebrates,invertebrates
1
Reoviridae,Orbivirus,Bluetongue virus
seg. 9
JQ086269

Bluetongue virus 21
NC_006010
vertebrates,invertebrates
3
Reoviridae,Orbivirus,Bluetongue virus
seg. 6
JQ086266,AJ586724,

JN572916

Bluetongue virus 21
NC_006013
vertebrates,invertebrates
1
Reoviridae,Orbivirus,Bluetongue virus
seg. 2
JQ086262

Bluetongue virus 21
NC_006014
vertebrates,invertebrates
3
Reoviridae,Orbivirus,Bluetongue virus
seg. 3
AF529046,AF529047,

JQ086263

Bluetongue virus 21
NC_006015
vertebrates,invertebrates
6
Reoviridae,Orbivirus,Bluetongue virus
seg.
AB473808,JQ086270,

10
AF529053,AF529054,

AF529058,JX272418

Bluetongue virus 21
NC_006022
vertebrates,invertebrates
2
Reoviridae,Orbivirus,Bluetongue virus
seg. 7
AB473807,JQ086267

Bluetongue virus 21
NC_006023
vertebrates,invertebrates
1
Reoviridae,Orbivirus,Bluetongue virus
seg. 1
JQ086261

Bluetongue virus 21
NC_006024
vertebrates,invertebrates
1
Reoviridae,Orbivirus,Bluetongue virus
seg. 4
JQ086264

Bluetongue virus 21
NC_006025
vertebrates,invertebrates
1
Reoviridae,Orbivirus,Bluetongue virus
seg. 5
JQ086265

Bluetongue virus 22
NC_006010
vertebrates,invertebrates
2
Reoviridae,Orbivirus,Bluetongue virus
seg. 6
AJ586725,AJ586726

Bluetongue virus 22
NC_006015
vertebrates,invertebrates
1
Reoviridae,Orbivirus,Bluetongue virus
seg.
JX272398

10

Bluetongue virus 23
NC_006007
vertebrates,invertebrates
4
Reoviridae,Orbivirus,Bluetongue virus
seg. 8
JQ771829,JQ086278,

AM900387,AM90038

1

Bluetongue virus 23
NC_006008
vertebrates,invertebrates
2
Reoviridae,Orbivirus,Bluetongue virus
seg. 9
JQ086279,JQ771830

Bluetongue virus 23
NC_006010
vertebrates,invertebrates
5
Reoviridae,Orbivirus,Bluetongue virus
seg. 6
AJ586729,AJ586728,

JQ086276,AJ586727,

AJ783907

Bluetongue virus 23
NC_006013
vertebrates,invertebrates
2
Reoviridae,Orbivirus,Bluetongue virus
seg. 2
JQ086272,L46685

Bluetongue virus 23
NC_006014
vertebrates,invertebrates
3
Reoviridae,Orbivirus,Bluetongue virus
seg. 3
JQ086273,JQ771825,

DQ186810

Bluetongue virus 23
NC_006015
vertebrates,invertebrates
5
Reoviridae,Orbivirus,Bluetongue virus
seg.
JX272408,AF529059,

10
JQ086280,AF529051,

JQ771831

Bluetongue virus 23
NC_006022
vertebrates,invertebrates
3
Reoviridae,Orbivirus,Bluetongue virus
seg. 7
AJ277802,JQ771828,

JQ086277

Bluetongue virus 23
NC_006023
vertebrates,invertebrates
2
Reoviridae,Orbivirus,Bluetongue virus
seg. 1
JQ771823,JQ086271

Bluetongue virus 23
NC_006024
vertebrates,invertebrates
2
Reoviridae,Orbivirus,Bluetongue virus
seg. 4
JQ086274,JQ771826

Bluetongue virus 23
NC_006025
vertebrates,invertebrates
2
Reoviridae,Orbivirus,Bluetongue virus
seg. 5
JQ771827,JQ086275

Bluetongue virus 24
NC_006010
vertebrates,invertebrates
1
Reoviridae,Orbivirus,Bluetongue virus
seg. 6
AJ586730

Bluetongue virus 24
NC_006013
vertebrates,invertebrates
1
Reoviridae,Orbivirus,Bluetongue virus
seg. 2
AJ585145

Bluetongue virus 24
NC_006015
vertebrates,invertebrates
1
Reoviridae,Orbivirus,Bluetongue virus
seg.
JX272378

10

Bluetongue virus 3
NC_006007
vertebrates,invertebrates
1
Reoviridae,Orbivirus,Bluetongue virus
seg. 8
JQ086288

Bluetongue virus 3
NC_006008
vertebrates,invertebrates
1
Reoviridae,Orbivirus,Bluetongue virus
seg. 9
JQ086289

Bluetongue virus 3
NC_006010
vertebrates,invertebrates
3
Reoviridae,Orbivirus,Bluetongue virus
seg. 6
AJ586698,JQ086286,

AJ586697

Bluetongue virus 3
NC_006013
vertebrates,invertebrates
2
Reoviridae,Orbivirus,Bluetongue virus
seg. 2
JQ086282,L42168

Bluetongue virus 3
NC_006014
vertebrates,invertebrates
2
Reoviridae,Orbivirus,Bluetongue virus
seg. 3
JQ086283,AF529045

Bluetongue virus 3
NC_006015
vertebrates,invertebrates
7
Reoviridae,Orbivirus,Bluetongue virus
seg.
AF135225,AF512917,

10
AF512918,JQ086290,

AF529050,JX272598,

AF512906

Bluetongue virus 3
NC_006022
vertebrates,invertebrates
1
Reoviridae,Orbivirus,Bluetongue virus
seg. 7
JQ086287

Bluetongue virus 3
NC_006023
vertebrates,invertebrates
1
Reoviridae,Orbivirus,Bluetongue virus
seg. 1
JQ086281

Bluetongue virus 3
NC_006024
vertebrates,invertebrates

Reoviridae,Orbivirus,Bluetongue virus
seg. 4
JQ086284

Bluetongue virus 3
NC_006025
vertebrates,invertebrates
1
Reoviridae,Orbivirus,Bluetongue virus
seg. 5
JQ086285

Bluetongue virus 4
NC_006007
vertebrates,invertebrates
5
Reoviridae,Orbivirus,Bluetongue virus
seg. 8
JN255889,JN255899,

AM900373,JN255949

,AM900372

Bluetongue virus 4
NC_006008
vertebrates,invertebrates
3
Reoviridae,Orbivirus,Bluetongue virus
seg. 9
JN255900,JN255950,

JN255890

Bluetongue virus 4
NC_006010
vertebrates,invertebrates
13
Reoviridae,Orbivirus,Bluetongue virus
seg. 6
JN255887,AJ586680,

AJ586682,AJ586677,

AJ586679,AJ586699,

AJ783909,AJ586678,

AJ783908,JN255947,

AJ586676,AJ586681,

JN255897

Bluetongue virus 4
NC_006013
vertebrates,invertebrates
11
Reoviridae,Orbivirus,Bluetongue virus
seg. 2
EF434176,JN255943,

DQ191276,JN255883

,DQ191281,DQ19127

7,AJ585125,DQ1912

80,DQ191279,DQ191

278,JN255893

Bluetongue virus 4
NC_006014
vertebrates,invertebrates
17
Reoviridae,Orbivirus,Bluetongue virus
seg. 3
JN255894,DQ186803

,DQ186801,DQ18681

3,DQ186806,DQ1868

00,DQ186809,DQ186

794,DQ186804,DQ18

6799,DQ186824,DQ1

86825,DQ186802,DQ

186817,JN255884,D

0186823,JN255944

Bluetongue virus 4
NC_006015
vertebrates,invertebrates
11
Reoviridae,Orbivirus,Bluetongue virus
seg.
JN255901,AF512908,

10
JN255951,JX272588,

JN255891,AJ783911,

AF512907,AF512909,

AJ783910,AF135226,

AF512905

Bluetongue virus 4
NC_006022
vertebrates,invertebrates
3
Reoviridae,Orbivirus,Bluetongue virus
seg. 7
JN255898,JN255888,

JN255948

Bluetongue virus 4
NC_006023
vertebrates,invertebrates
3
Reoviridae,Orbivirus,Bluetongue virus
seg. 1
JN255942,JN255882,

JN255892

Bluetongue virus 4
NC_006024
vertebrates,invertebrates
3
Reoviridae,Orbivirus,Bluetongue virus
seg. 4
JN255895,JN255945,

JN255885

Bluetongue virus 4
NC_006025
vertebrates,invertebrates
6
Reoviridae,Orbivirus,Bluetongue virus
seg. 5
AM778440,JN255886

,AM778439,JN25594

6,JN255896,AM7784

41

Bluetongue virus 5
NC_006007
vertebrates,invertebrates
1
Reoviridae,Orbivirus,Bluetongue virus
seg. 8
AM900378

Bluetongue virus 5
NC_006010
vertebrates,invertebrates
3
Reoviridae,Orbivirus,Bluetongue virus
seg. 6
AJ586702,AJ586700,

AJ586701

Bluetongue virus 5
NC_006015
vertebrates,invertebrates
1
Reoviridae,Orbivirus,Bluetongue virus
seg.
JX272578

10

Bluetongue virus 6
NC_006010
vertebrates,invertebrates
1
Reoviridae,Orbivirus,Bluetongue virus
seg. 6
AJ586703

Bluetongue virus 6
NC_006015
vertebrates,invertebrates
1
Reoviridae,Orbivirus,Bluetongue virus
seg.
JX272568

10

Bluetongue virus 7
NC_006007
vertebrates,invertebrates
1
Reoviridae,Orbivirus,Bluetongue virus
seg. 8
JQ086298

Bluetongue virus 7
NC_006008
vertebrates,invertebrates
1
Reoviridae,Orbivirus,Bluetongue virus
seg. 9
JQ086299

Bluetongue virus 7
NC_006010
vertebrates,invertebrates
2
Reoviridae,Orbivirus,Bluetongue virus
seg. 6
JQ086296,AJ586704

Bluetongue virus 7
NC_006013
vertebrates,invertebrates
1
Reoviridae,Orbivirus,Bluetongue virus
seg. 2
JQ086292

Bluetongue virus 7
NC_006014
vertebrates,invertebrates
1
Reoviridae,Orbivirus,Bluetongue virus
seg. 3
JQ086293

Bluetongue virus 7
NC_006015
vertebrates,invertebrates
2
Reoviridae,Orbivirus,Bluetongue virus
seg.
JQ086300,JX272558

10

Bluetongue virus 7
NC_006022
vertebrates,invertebrates
1
Reoviridae,Orbivirus,Bluetongue virus
seg. 7
JQ086297

Bluetongue virus 7
NC_006023
vertebrates,invertebrates
1
Reoviridae,Orbivirus,Bluetongue virus
seg. 1
JQ086291

Bluetongue virus 7
NC_006024
vertebrates,invertebrates
1
Reoviridae,Orbivirus,Bluetongue virus
seg. 4
JQ086294

Bluetongue virus 7
NC_006025
vertebrates,invertebrates
1
Reoviridae,Orbivirus,Bluetongue virus
seg. 5
JQ086295

Bluetongue virus 8
NC_006007
vertebrates,invertebrates
3
Reoviridae,Orbivirus,Bluetongue virus
seg. 8
FJ183381,AM900389,

AM498058

Bluetongue virus 8
NC_006008
vertebrates,invertebrates
2
Reoviridae,Orbivirus,Bluetongue virus
seg. 9
FJ183382,AM498059

Bluetongue virus 8
NC_006010
vertebrates,invertebrates
4
Reoviridae,Orbivirus,Bluetongue virus
seg. 6
FJ183379,AJ586707,

AJ586706,AJ586705

Bluetongue virus 8
NC_006013
vertebrates,invertebrates
1
Reoviridae,Orbivirus,Bluetongue virus
seg. 2
AM498052

Bluetongue virus 8
NC_006014
vertebrates,invertebrates
2
Reoviridae,Orbivirus,Bluetongue virus
seg. 3
AM498053,FJ183376

Bluetongue virus 8
NC_006015
vertebrates,invertebrates
6
Reoviridae,Orbivirus,Bluetongue virus
seg.
AY120938,AF512924,

10
FJ183383,JX272548,

AF512919,AM498060

Bluetongue virus 8
NC_006022
vertebrates,invertebrates
2
Reoviridae,Orbivirus,Bluetongue virus
seg. 7
AM498057,FJ183380

Bluetongue virus 8
NC_006023
vertebrates,invertebrates
2
Reoviridae,Orbivirus,Bluetongue virus
seg. 1
AM498051,FJ183374

Bluetongue virus 8
NC_006024
vertebrates,invertebrates
3
Reoviridae,Orbivirus,Bluetongue virus
seg. 4
FJ183377,AM498054,

JX680450

Bluetongue virus 8
NC_006025
vertebrates,invertebrates
3
Reoviridae,Orbivirus,Bluetongue virus
seg. 5
FJ183378,AM498055,

AM498056

Bluetongue virus 9
NC_006007
vertebrates,invertebrates
12
Reoviridae,Orbivirus,Bluetongue virus
seg. 8
JN255919,AM900375

,AM900374,JQ08630

8,JF443164,JN25596

9,AM900388,JN2559

09,AM900377,AM900

385,JN255959,AM90

0376

Bluetongue virus 9
NC_006008
vertebrates,invertebrates
11
Reoviridae,Orbivirus,Bluetongue virus
seg. 9
JF443161,JQ086309,

JN255960,JN2565970,

JN255910,JN255920

Bluetongue virus 9
NC_006010
vertebrates,invertebrates
14
Reoviridae,Orbivirus,Bluetongue virus
seg. 6
AJ586685,JN255967,

AJ586686,JF443160,

JQ086306,JN255957,

AJ586688,JN255917,

JN579709,AJ586683,

JN255907,AJ586684,

AJ586687,AJ586708

Bluetongue virus 9
NC_006013
vertebrates,invertebrates
13
Reoviridae,Orbivirus,Bluetongue virus
seg. 2
JF443157,JN255953,

DQ191285,DQ19128

4,JQ086302,JF44315

6,JN255913,DQ1912

82,JF443167,JN2559

63,JF443155,DQ1912

83,JN255903

Bluetongue virus 9
NC_006014
vertebrates,invertebrates
11
Reoviridae,Orbivirus,Bluetongue virus
seg. 3
DQ186797,DQ18680

5,JN255954,DQ1867

95,JQ086303,JN2559

04,JN255964,JF4431

58,DQ186808,DQ186

790,JN255914

Bluetongue virus 9
NC_006015
vertebrates,invertebrates
8
Reoviridae,Orbivirus,Bluetongue virus
seg.
JQ086310,JF443165,

10
AY438034,JN255961,

JX272538,JN255911,

JN255971,JN255921

Bluetongue virus 9
NC_006022
vertebrates,invertebrates
6
Reoviridae,Orbivirus,Bluetongue virus
seg. 7
JN255908,JQ086307,

JN255968,JN255918,

JN255958,JF443162

Bluetongue virus 9
NC_006023
vertebrates,invertebrates
6
Reoviridae,Orbivirus,Bluetongue virus
seg. 1
JN255902,JQ086301,

JN255952,JN255962,

JN255912,JF443166

Bluetongue virus 9
NC_006024
vertebrates,invertebrates
6
Reoviridae,Orbivirus,Bluetongue virus
seg. 4
JN255965,JN255905,

JN255955,JQ086304,

JN255915,JF443159

Bluetongue virus 9
NC_006025
vertebrates,invertebrates
10
Reoviridae,Orbivirus,Bluetongue virus
seg. 5
AM778443,JN255916

,AM778444,JN25595

6,JF443163,AM77844

2,JN255906,JQ08630

5,JN255966,AM7784

45

Boolarra virus
NC_004142
vertebrates,invertebrates
1
Nodaviridae,Alphanodavirus,Boolarra virus
seg. 2
AF329080

Boolarra virus
NC_004145
vertebrates,invertebrates
1
Nodaviridae,Alphanodavirus,Boolarra virus
seg.
X15960

RNA 2

Buggy Creek virus
NC_013528
vertebrates,invertebrates
1
Togaviridae,Alphavirus,Fort Morgan virus
—
HM147986

Changuinola virus
NC_022633
vertebrates,invertebrates
1
Reoviridae,Orbivirus,Changuinola virus
seg. 2
KF624615

Changuinola virus
NC_022634
vertebrates,invertebrates
1
Reoviridae,Orbivirus,Changuinola virus
seg. 3
KF624616

Changuinola virus
NC_022635
vertebrates,invertebrates
1
Reoviridae,Orbivirus,Changuinola virus
seg. 5
KF624618

Changuinola virus
NC_022636
vertebrates,invertebrates
1
Reoviridae,Orbivirus,Changuinola virus
seg. 7
KF624620

Changuinola virus
NC_022637
vertebrates,invertebrates
1
Reoviridae,Orbivirus,Changuinola virus
seg. 8
KF624621

Changuinola virus
NC_022638
vertebrates,invertebrates
1
Reoviridae,Orbivirus,Changuinola virus
seg.
KF624623

10

Changuinola virus
NC_022639
vertebrates,invertebrates
1
Reoviridae,Orbivirus,Changuinola virus
seg. 1
KF624614

Changuinola virus
NC_022640
vertebrates,invertebrates
1
Reoviridae,Orbivirus,Changuinola virus
seg. 4
KF624617

Changuinola virus
NC_022641
vertebrates,invertebrates
1
Reoviridae,Orbivirus,Changuinola virus
seg. 6
KF624619

Changuinola virus
NC_022642
vertebrates,invertebrates
1
Reoviridae,Orbivirus,Changuinola virus
seg. 9
KF624622

Chuzan virus
NC_005986
vertebrates,invertebrates
4
Reoviridae,Orbivirus,Palyam virus
seg. 2
AB177635,AB177632

,AB177634,AB17763

7

Chuzan virus
NC_005988
vertebrates,invertebrates
2
Reoviridae,Orbivirus,Palyam virus
seg. 7
AY078469,AY078470

Corsican bluetongue virus
NC_006007
vertebrates,invertebrates
1
Reoviridae,Orbivirus,Bluetongue virus
seg. 8
AY124372

Corsican bluetongue virus
NC_006008
vertebrates,invertebrates
1
Reoviridae,Orbivirus,Bluetongue virus
seg. 9
AY124373

Corsican bluetongue virus
NC_006014
vertebrates,invertebrates
1
Reoviridae,Orbivirus,Bluetongue virus
seg. 3
AY124371

Corsican bluetongue virus
NC_006015
vertebrates,invertebrates
2
Reoviridae,Orbivirus,Bluetongue virus
seg.
AF481092,AF481093

10

Corsican bluetongue virus
NC_006022
vertebrates,invertebrates
1
Reoviridae,Orbivirus,Bluetongue virus
seg. 7
AY079124

Corsican bluetongue virus
NC_006023
vertebrates,invertebrates
1
Reoviridae,Orbivirus,Bluetongue virus
seg. 1
AY154458

Eastern equine encephalitis
NC_003899
vertebrates,invertebrates
10
Togaviridae,Alphavirus,Eastern equine
—
DQ241303,DQ24130

virus

encephalitis virus

4,EF151503,AY70524

0,AY722102,U01034,

EF151502,AY705241,

X63135,EF568607

Eilat virus
NC_018615
vertebrates,invertebrates
1
Togaviridae,Alphavirus,Eilat virus
—
JX678730

Epizootic hemorrhagic
NC_013398
vertebrates,invertebrates
1
Reoviridae,Orbivirus,Epizootic hemorrhagic
seg. 3
S68010

disease of deer virus

disease virus

Epizootic hemorrhagic
NC_013402
vertebrates,invertebrates
3
Reoviridae,Orbivirus,Epizootic hemorrhagic
seg. 7
AY386683,U43560,A

disease of deer virus

disease virus

F188643

Epizootic hemorrhagic
NC_013396
vertebrates,invertebrates
3
Reoviridae,Orbivirus,Epizootic hemorrhagic
seg. 1
HM641772,HM63689

disease virus

disease virus

7,HM636907

Epizootic hemorrhagic

Reoviridae,Orbivirus,Epizootic hemorrhagic
seg. 2
AB030735,HM641773

NC_013397

vertebrates,invertebrates
3

disease virus

disease virus

,D10767

Epizootic hemorrhagic
NC_013398
vertebrates,invertebrates
6
Reoviridae,Orbivirus,Epizootic hemorrhagic
seg. 3
X61589,HM636909,H

disease virus

disease virus

M641774,AB041933,

EU856069,HM63689

Epizootic hemorrhagic
NC_013399
vertebrates,invertebrates
9
Reoviridae,Orbivirus,Epizootic hemorrhagic
seg. 4
HM641775,HM63690

disease virus

disease virus

0,HM636910

Epizootic hemorrhagic
NC_013400
vertebrates,invertebrates
3
Reoviridae,Orbivirus,Epizootic hemorrhagic
seg. 5
HM641776,AB030736

disease virus

disease virus

,X55782

Epizootic hemorrhagic
NC_013401
vertebrates,invertebrates
2
Reoviridae,Orbivirus,Epizootic hemorrhagic
seg. 6
X59000,HM641777

disease virus

disease virus

Epizootic hemorrhagic
NC_013402
vertebrates,invertebrates
9
Reoviridae,Orbivirus,Epizootic hemorrhagic
seg. 7
EF213556,D10766,E

disease virus

disease virus

U856070,HM641778,

AF484250,AY351653,

AB041934,HM636913

,HM636903

Epizootic hemorrhagic
NC_013403
vertebrates,invertebrates
3
Reoviridae,Orbivirus,Epizootic hemorrhagic
seg. 8
HM636914,HM64177

disease virus

disease virus

9,HM636904

Epizootic hemorrhagic
NC_013404
vertebrates,invertebrates
1
Reoviridae,Orbivirus,Epizootic hemorrhagic
seg. 9
HM641780

disease virus

disease virus

Epizootic hemorrhagic
NC_013405
vertebrates,invertebrates
4
Reoviridae,Orbivirus,Epizootic hemorrhagic
seg.
AY351654,HM636906

disease virus

disease virus
10
,HM641781,HM63691

6

Epizootic hemorrhagic
NC_013396
vertebrates,invertebrates
2
Reoviridae,Orbivirus,Epizootic hemorrhagic
seg. 1
AM745007,AM74501

disease virus (serotype 1/

disease virus

0

strain IbAr22619)

Epizootic hemorrhagic
NC_013397
vertebrates,invertebrates
1
Reoviridae,Orbivirus,Epizootic hemorrhagic
seg. 2
AM745008

disease virus (serotype 1/

disease virus

strain IbAr22619)

Epizootic hemorrhagic
NC_013398
vertebrates,invertebrates
1
Reoviridae,Orbivirus,Epizootic hemorrhagic
seg. 3
AM745009

disease virus (serotype 1/

disease virus

strain IbAr22619)

Epizootic hemorrhagic
NC_013400
vertebrates,invertebrates
1
Reoviridae,Orbivirus,Epizootic hemorrhagic
seg. 5
AM745011

disease virus (serotype 1/

disease virus

strain IbAr22619)

Epizootic hemorrhagic
NC_013401
vertebrates,invertebrates
1
Reoviridae,Orbivirus,Epizootic hemorrhagic
seg. 6
AM745012

vertebrates,invertebrates

disease virus (serotype 1/

disease virus

strain IbAr22619)

Epizootic hemorrhagic
NC_013402
vertebrates,invertebrates
1
Reoviridae,Orbivirus,Epizootic hemorrhagic
seg. 7
AM745013

disease virus (serotype 1/

disease virus

strain IbAr22619)

Epizootic hemorrhagic
NC_013403
vertebrates,invertebrates
1
Reoviridae,Orbivirus,Epizootic hemorrhagic
seg. 8
AM745014

disease virus (serotype 1/

disease virus

strain IbAr22619)

Epizootic hemorrhagic
NC_013404
vertebrates,invertebrates
1
Reoviridae,Orbivirus,Epizootic hemorrhagic
seg. 9
AM745015

disease virus (serotype 1/

disease virus

strain IbAr22619)

Epizootic hemorrhagic
NC_013405
vertebrates,invertebrates
1
Reoviridae,Orbivirus,Epizootic hemorrhagic
seg.
AM745016

disease virus (serotype 1/

disease virus
10

strain IbAr22619)

Epizootic hemorrhagic
NC_013396
vertebrates,invertebrates
1
Reoviridae,Orbivirus,Epizootic hemorrhagic
seg. 1
AM744977

disease virus (serotype 1/

disease virus

strain New Jersey)

Epizootic hemorrhagic
NC_013397
vertebrates,invertebrates
1
Reoviridae,Orbivirus,Epizootic hemorrhagic
seg. 2
AM744978

disease virus (serotype 1/

disease virus

strain New Jersey)

Epizootic hemorrhagic
NC_013398
vertebrates,invertebrates
1
Reoviridae,Orbivirus,Epizootic hemorrhagic
seg. 3
AM744979

disease virus (serotype 1/

disease virus

strain New Jersey)

Epizootic hemorrhagic
NC_013399
vertebrates,invertebrates
1
Reoviridae,Orbivirus,Epizootic hemorrhagic
seg. 4
AM744980

disease virus (serotype 1/

disease virus

strain New Jersey)

Epizootic hemorrhagic
NC_013400
vertebrates,invertebrates
1
Reoviridae,Orbivirus,Epizootic hemorrhagic
seg. 5
AM744981

disease virus (serotype 1/

disease virus

strain New Jersey)

Epizootic hemorrhagic
NC_013401
vertebrates,invertebrates
1
Reoviridae,Orbivirus,Epizootic hemorrhagic
seg. 6
AM744982

disease virus (serotype 1/

disease virus

strain New Jersey)

Epizootic hemorrhagic
NC_013402
vertebrates,invertebrates
1
Reoviridae,Orbivirus,Epizootic hemorrhagic
seg. 7
AM744983

disease virus (serotype 1/

disease virus

strain New Jersey)

Epizootic hemorrhagic
NC_013403
vertebrates,invertebrates
1
Reoviridae,Orbivirus,Epizootic hemorrhagic
seg. 8
AM744984

disease virus (serotype 1/

disease virus

strain New Jersey)

Epizootic hemorrhagic
NC_013404
vertebrates,invertebrates
1
Reoviridae,Orbivirus,Epizootic hemorrhagic
seg. 9
AM744985

disease virus (serotype 1/

disease virus

strain New Jersey)

Epizootic hemorrhagic
NC_013405
vertebrates,invertebrates
1
Reoviridae,Orbivirus,Epizootic hemorrhagic
seg.
AM744986

disease virus (serotype 1/

disease virus
10

strain New Jersey)

Epizootic hemorrhagic
NC_013396
vertebrates,invertebrates
1
Reoviridae,Orbivirus,Epizootic hemorrhagic
seg. 1
AM744987

disease virus (serotype 2/

disease virus

strain 439)

Epizootic hemorrhagic
NC_013397
vertebrates,invertebrates
1
Reoviridae,Orbivirus,Epizootic hemorrhagic
seg. 2
AM744988

disease virus (serotype 2/

disease virus

strain 439)

Epizootic hemorrhagic
NC_013398
vertebrates,invertebrates
1
Reoviridae,Orbivirus,Epizootic hemorrhagic
seg. 3
AM744989

disease virus (serotype 2/

disease virus

strain 439)

Epizootic hemorrhagic
NC_013399
vertebrates,invertebrates
1
Reoviridae,Orbivirus,Epizootic hemorrhagic
seg. 4
AM744990

disease virus (serotype 2/

disease virus

strain 439)

Epizootic hemorrhagic
NC_013400
vertebrates,invertebrates
1
Reoviridae,Orbivirus,Epizootic hemorrhagic
seg. 5
AM744991

disease virus (serotype 2/

disease virus

strain 439)

Epizootic hemorrhagic
NC_013401
vertebrates,invertebrates
1
Reoviridae,Orbivirus,Epizootic hemorrhagic
seg. 6
AM744992

disease virus (serotype 2/

disease virus

strain 439)

Epizootic hemorrhagic
NC_013402
vertebrates,invertebrates
1
Reoviridae,Orbivirus,Epizootic hemorrhagic
seg. 7
AM744993

disease virus (serotype 2/

disease virus

strain 439)

Epizootic hemorrhagic
NC_013403
vertebrates,invertebrates
1
Reoviridae,Orbivirus,Epizootic hemorrhagic
seg. 8
AM744994

disease virus (serotype 2/

disease virus

strain 439)

Epizootic hemorrhagic
NC_013404
vertebrates,invertebrates
1
Reoviridae,Orbivirus,Epizootic hemorrhagic
seg. 9
AM744995

disease virus (serotype 2/

disease virus

strain 439)

Epizootic hemorrhagic
NC_013405
vertebrates,invertebrates
1
Reoviridae,Orbivirus,Epizootic hemorrhagic
seg.
AM744996

disease virus (serotype 2/

disease virus
10

strain 439)

Epizootic hemorrhagic
NC_013396
vertebrates,invertebrates
1
Reoviridae,Orbivirus,Epizootic hemorrhagic
seg. 1
AM744997

disease virus (serotype 2/

disease virus

strain Alberta)

Epizootic hemorrhagic
NC_013397
vertebrates,invertebrates
1
Reoviridae,Orbivirus,Epizootic hemorrhagic
seg. 2
AM744998

disease virus (serotype 2/

disease virus

strain Alberta)

Epizootic hemorrhagic
NC_013398
vertebrates,invertebrates
1
Reoviridae,Orbivirus,Epizootic hemorrhagic
seg. 3
AM744999

disease virus (serotype 2/

disease virus

strain Alberta)

Epizootic hemorrhagic
NC_013399
vertebrates,invertebrates
1
Reoviridae,Orbivirus,Epizootic hemorrhagic
seg. 4
AM745000

disease virus (serotype 2/

disease virus

strain Alberta)

Epizootic hemorrhagic
NC_013400
vertebrates,invertebrates
1
Reoviridae,Orbivirus,Epizootic hemorrhagic
seg. 5
AM745001

disease virus (serotype 2/

disease virus

strain Alberta)

Epizootic hemorrhagic
NC_013401
vertebrates,invertebrates
1
Reoviridae,Orbivirus,Epizootic hemorrhagic
seg. 6
AM745002

disease virus (serotype 2/

disease virus

strain Alberta)

Epizootic hemorrhagic
NC_013402
vertebrates,invertebrates
1
Reoviridae,Orbivirus,Epizootic hemorrhagic
seg. 7
AM745003

disease virus (serotype 2/

disease virus

strain Alberta)

Epizootic hemorrhagic
NC_013403
vertebrates,invertebrates
1
Reoviridae,Orbivirus,Epizootic hemorrhagic
seg. 8
AM745004

disease virus (serotype 2/

disease virus

strain Alberta)

Epizootic hemorrhagic
NC_013404
vertebrates,invertebrates
1
Reoviridae,Orbivirus,Epizootic hemorrhagic
seg. 9
AM745005

disease virus (serotype 2/

disease virus

strain Alberta)

Epizootic hemorrhagic
NC_013405
vertebrates,invertebrates
1
Reoviridae,Orbivirus,Epizootic hemorrhagic
seg.
AM745006

disease virus (serotype 2/

disease virus
10

strain Alberta)

Epizootic hemorrhagic
NC_013396
vertebrates,invertebrates
1
Reoviridae,Orbivirus,Epizootic hemorrhagic
seg. 1
AM745077

disease virus (serotype 2/

disease virus

strain lbaraki)

Epizootic hemorrhagic
NC_013397
vertebrates,invertebrates
1
Reoviridae,Orbivirus,Epizootic hemorrhagic
seg. 2
AM745078

disease virus (serotype 2/

disease virus

strain lbaraki)

Epizootic hemorrhagic
NC_013398
vertebrates,invertebrates
1
Reoviridae,Orbivirus,Epizootic hemorrhagic
seg. 3
AM745079

disease virus (serotype 2/

disease virus

strain lbaraki)

Epizootic hemorrhagic
NC_013399
vertebrates,invertebrates
1
Reoviridae,Orbivirus,Epizootic hemorrhagic
seg. 4
AM745080

disease virus (serotype 2/

disease virus

strain lbaraki)

Epizootic hemorrhagic
NC_013400
vertebrates,invertebrates
1
Reoviridae,Orbivirus,Epizootic hemorrhagic
seg. 5
AM745081

disease virus (serotype 2/

disease virus

strain lbaraki)

Epizootic hemorrhagic
NC_013401
vertebrates,invertebrates
1
Reoviridae,Orbivirus,Epizootic hemorrhagic
seg. 6
AM745082

disease virus (serotype
2/

disease virus

strain lbaraki)

Epizootic hemorrhagic
NC_013402
vertebrates,invertebrates
1
Reoviridae,Orbivirus,Epizootic hemorrhagic
seg. 7
AM745083

disease virus (serotype 2/

disease virus

strain lbaraki)

Epizootic hemorrhagic
NC_013403
vertebrates,invertebrates
1
Reoviridae,Orbivirus,Epizootic hemorrhagic
seg. 8
AM745084

disease virus (serotype 2/

disease virus

strain lbaraki)

Epizootic hemorrhagic
NC_013404
vertebrates,invertebrates
1
Reoviridae,Orbivirus,Epizootic hemorrhagic
seg. 9
AM745085

disease virus (serotype 2/

disease virus

strain lbaraki)

Epizootic hemorrhagic
NC_013405
vertebrates,invertebrates
1
Reoviridae,Orbivirus,Epizootic hemorrhagic
seg.
AM745086

disease virus (serotype 2/

disease virus
10

strain lbaraki)

Epizootic hemorrhagic
NC_013396
vertebrates,invertebrates
1
Reoviridae,Orbivirus,Epizootic hemorrhagic
seg. 1
AM745017

disease virus (serotype 4/

disease virus

strain IbAr 33853)

Epizootic hemorrhagic
NC_013397
vertebrates,invertebrates
1
Reoviridae,Orbivirus,Epizootic hemorrhagic
seg. 2
AM745018

disease virus (serotype 4/

disease virus

strain IbAr 33853)

Epizootic hemorrhagic
NC_013398
vertebrates,invertebrates
1
Reoviridae,Orbivirus,Epizootic hemorrhagic
seg. 3
AM745019

disease virus (serotype 4/

disease virus

strain IbAr 33853)

Epizootic hemorrhagic
NC_013399
vertebrates,invertebrates
1
Reoviridae,Orbivirus,Epizootic hemorrhagic
seg. 4
AM745020

disease virus (serotype 4/

disease virus

strain IbAr 33853)

Epizootic hemorrhagic
NC_013400
vertebrates,invertebrates
1
Reoviridae,Orbivirus,Epizootic hemorrhagic
seg. 5
AM745021

disease virus (serotype 4/

disease virus

strain IbAr 33853)

Epizootic hemorrhagic
NC_013401
vertebrates,invertebrates
1
Reoviridae,Orbivirus,Epizootic hemorrhagic
seg. 6
AM745022

disease virus (serotype 4/

disease virus

strain IbAr 33853)

Epizootic hemorrhagic
NC_013402
vertebrates,invertebrates
1
Reoviridae,Orbivirus,Epizootic hemorrhagic
seg. 7
AM745023

disease virus (serotype 4/

disease virus

strain IbAr 33853)

Epizootic hemorrhagic
NC_013403
vertebrates,invertebrates
1
Reoviridae,Orbivirus,Epizootic hemorrhagic
seg. 8
AM745024

disease virus (serotype 4/

disease virus

strain IbAr 33853)

Epizootic hemorrhagic
NC_013404
vertebrates,invertebrates
1
Reoviridae,Orbivirus,Epizootic hemorrhagic
seg. 9
AM745025

disease virus (serotype 4/

disease virus

strain IbAr 33853)

Epizootic hemorrhagic
NC_013405
vertebrates,invertebrates
1
Reoviridae,Orbivirus,Epizootic hemorrhagic
seg.
AM745026

disease virus (serotype 4/

disease virus
10

strain IbAr 33853)

Epizootic hemorrhagic
NC_013396
vertebrates,invertebrates
2
Reoviridae,Orbivirus,Epizootic hemorrhagic
seg. 1
AM745028,AM74502

disease virus (serotype 5/

disease virus

7

strain CSIRO 157)

Epizootic hemorrhagic
NC_013397
vertebrates,invertebrates
1
Reoviridae,Orbivirus,Epizootic hemorrhagic
seg. 2
AM745029

disease virus (serotype 5/

disease virus

strain CSIRO 157)

Epizootic hemorrhagic
NC_013398
vertebrates,invertebrates
1
Reoviridae,Orbivirus,Epizootic hemorrhagic
seg. 3
AM745030

disease virus (serotype 5/

disease virus

strain CSIRO 157)

Epizootic hemorrhagic
NC_013400
vertebrates,invertebrates
1
Reoviridae,Orbivirus,Epizootic hemorrhagic
seg. 5
AM745031

disease virus (serotype 5/

disease virus

strain CSIRO 157)

Epizootic hemorrhagic
NC_013401
vertebrates,invertebrates
1
Reoviridae,Orbivirus,Epizootic hemorrhagic
seg. 6
AM745032

disease virus (serotype 5/

disease virus

strain CSIRO 157)

Epizootic hemorrhagic
NC_013402
vertebrates,invertebrates
1
Reoviridae,Orbivirus,Epizootic hemorrhagic
seg. 7
AM745033

disease virus (serotype 5/

disease virus

strain CSIRO 157)

Epizootic hemorrhagic
NC_013403
vertebrates,invertebrates
1
Reoviridae,Orbivirus,Epizootic hemorrhagic
seg. 8
AM745034

disease virus (serotype 5/

disease virus

strain CSIRO 157)

Epizootic hemorrhagic
NC_013404
vertebrates,invertebrates
1
Reoviridae,Orbivirus,Epizootic hemorrhagic
seg. 9
AM745035

disease virus (serotype 5/

disease virus

strain CSIRO 157)

Epizootic hemorrhagic
NC_013405
vertebrates,invertebrates
1
Reoviridae,Orbivirus,Epizootic hemorrhagic
seg.
AM745036

disease virus (serotype 5/

disease virus
10

strain CSIRO 157)

Epizootic hemorrhagic
NC_013396
vertebrates,invertebrates
1
Reoviridae,Orbivirus,Epizootic hemorrhagic
seg. 1
AM745067

disease virus (serotype 6/

disease virus

strain 318)

Epizootic hemorrhagic
NC_013397
vertebrates,invertebrates
1
Reoviridae,Orbivirus,Epizootic hemorrhagic
seg. 2
AM745068

disease virus (serotype 6/

disease virus

strain 318)

Epizootic hemorrhagic
NC_013398
vertebrates,invertebrates
1
Reoviridae,Orbivirus,Epizootic hemorrhagic
seg. 3
AM745069

disease virus (serotype 6/

disease virus

strain 318)

Epizootic hemorrhagic
NC_013399
vertebrates,invertebrates
1
Reoviridae,Orbivirus,Epizootic hemorrhagic
seg. 4
AM745070

disease virus (serotype 6/

disease virus

strain 318)

Epizootic hemorrhagic
NC_013400
vertebrates,invertebrates
1
Reoviridae,Orbivirus,Epizootic hemorrhagic
seg. 5
AM745071

disease virus (serotype 6/

disease virus

strain 318)

Epizootic hemorrhagic
NC_013401
vertebrates,invertebrates
1
Reoviridae,Orbivirus,Epizootic hemorrhagic
seg. 6
AM745072

disease virus (serotype 6/

disease virus

strain 318)

Epizootic hemorrhagic
NC_013402
vertebrates,invertebrates
1
Reoviridae,Orbivirus,Epizootic hemorrhagic
seg. 7
AM745073

disease virus (serotype 6/

disease virus

strain 318)

Epizootic hemorrhagic
NC_013403
vertebrates,invertebrates
1
Reoviridae,Orbivirus,Epizootic hemorrhagic
seg. 8
AM745074

disease virus (serotype 6/

disease virus

strain 318)

Epizootic hemorrhagic
NC_013404
vertebrates,invertebrates
1
Reoviridae,Orbivirus,Epizootic hemorrhagic
seg. 9
AM745075

disease virus (serotype 6/

disease virus

strain 318)

Epizootic hemorrhagic
NC_013405
vertebrates,invertebrates
1
Reoviridae,Orbivirus,Epizootic hemorrhagic
seg.
AM745076

disease virus (serotype 6/

disease virus
10

strain 318)

Epizootic hemorrhagic
NC_013396
vertebrates,invertebrates
2
Reoviridae,Orbivirus,Epizootic hemorrhagic
seg. 1
AM745038,AM74503

disease virus (serotype 6/

disease virus
7

strain CSIRO 753)

Epizootic hemorrhagic
NC_013397
vertebrates,invertebrates
1
Reoviridae,Orbivirus,Epizootic hemorrhagic
seg. 2
AM745039

disease virus (serotype 6/

disease virus

strain CSIRO 753)

Epizootic hemorrhagic
NC_013398
vertebrates,invertebrates
1
Reoviridae,Orbivirus,Epizootic hemorrhagic
seg. 3
AM745040

disease virus (serotype 6/

disease virus

strain CSIRO 753)

Epizootic hemorrhagic
NC_013400
vertebrates,invertebrates
1
Reoviridae,Orbivirus,Epizootic hemorrhagic
seg. 5
AM745041

disease virus (serotype 6/

disease virus

strain CSIRO 753)

Epizootic hemorrhagic
NC_013401
vertebrates,invertebrates
1
Reoviridae,Orbivirus,Epizootic hemorrhagic
seg. 6
AM745042

disease virus (serotype 6/

disease virus

strain CSIRO 753)

Epizootic hemorrhagic
NC_013402
vertebrates,invertebrates
1
Reoviridae,Orbivirus,Epizootic hemorrhagic
seg. 7
AM745043

disease virus (serotype 6/

disease virus

strain CSIRO 753)

Epizootic hemorrhagic
NC_013403
vertebrates,invertebrates
1
Reoviridae,Orbivirus,Epizootic hemorrhagic
seg. 8
AM745044

disease virus (serotype 6/

disease virus

strain CSIRO 753)

Epizootic hemorrhagic
NC_013404
vertebrates,invertebrates
1
Reoviridae,Orbivirus,Epizootic hemorrhagic
seg. 9
AM745045

disease virus (serotype 6/

disease virus

strain CSIRO 753)

Epizootic hemorrhagic
NC_013405
vertebrates,invertebrates
1
Reoviridae,Orbivirus,Epizootic hemorrhagic
seg.
AM745046

disease virus (serotype 6/

disease virus
10

strain CSIRO 753)

Epizootic hemorrhagic
NC_013396
vertebrates,invertebrates
1
Reoviridae,Orbivirus,Epizootic hemorrhagic
seg. 1
AM745047

disease virus (serotype 7/

disease virus

strain CSIRO 775)

Epizootic hemorrhagic
NC_013397
vertebrates,invertebrates
1
Reoviridae,Orbivirus,Epizootic hemorrhagic
seg. 2
AM745048

disease virus (serotype 7/

disease virus

strain CSIRO 775)

Epizootic hemorrhagic
NC_013398
vertebrates,invertebrates
1
Reoviridae,Orbivirus,Epizootic hemorrhagic
seg. 3
AM745049

disease virus (serotype 7/

disease virus

strain CSIRO 775)

Epizootic hemorrhagic
NC_013399
vertebrates,invertebrates
1
Reoviridae,Orbivirus,Epizootic hemorrhagic
seg. 4
AM745050

disease virus (serotype 7/

disease virus

strain CSIRO 775)

Epizootic hemorrhagic
NC_013400
vertebrates,invertebrates
1
Reoviridae,Orbivirus,Epizootic hemorrhagic
seg. 5
AM745051

disease virus (serotype 7/

disease virus

strain CSIRO 775)

Epizootic hemorrhagic
NC_013401
vertebrates,invertebrates
1
Reoviridae,Orbivirus,Epizootic hemorrhagic
seg. 6
AM745052

disease virus (serotype 7/

disease virus

strain CSIRO 775)

Epizootic hemorrhagic
NC_013402
vertebrates,invertebrates
1
Reoviridae,Orbivirus,Epizootic hemorrhagic
seg. 7
AM745053

disease virus (serotype 7/

disease virus

strain CSIRO 775)

Epizootic hemorrhagic
NC_013403
vertebrates,invertebrates
1
Reoviridae,Orbivirus,Epizootic hemorrhagic
seg. 8
AM745054

disease virus (serotype 7/

disease virus

strain CSIRO 775)

Epizootic hemorrhagic
NC_013404
vertebrates,invertebrates
1
Reoviridae,Orbivirus,Epizootic hemorrhagic
seg. 9
AM745055

disease virus (serotype 7/

disease virus

strain CSIRO 775)

Epizootic hemorrhagic
NC_013405
vertebrates,invertebrates
1
Reoviridae,Orbivirus,Epizootic hemorrhagic
seg.
AM745056

disease virus (serotype 7/

disease virus
10

strain CSIRO 775)

Epizootic hemorrhagic
NC_013396
vertebrates,invertebrates
1
Reoviridae,Orbivirus,Epizootic hemorrhagic
seg. 1
AM745057

disease virus (serotype 8/

disease virus

strain CPR 3961A)

Epizootic hemorrhagic
NC_013397
vertebrates,invertebrates
1
Reoviridae,Orbivirus,Epizootic hemorrhagic
seg. 2
AM745058

disease virus (serotype 8/

disease virus

strain CPR 3961A)

Epizootic hemorrhagic
NC_013398
vertebrates,invertebrates
1
Reoviridae,Orbivirus,Epizootic hemorrhagic
seg. 3
AM745059

disease virus (serotype 8/

disease virus

strain CPR 3961A)

Epizootic hemorrhagic
NC_013399
vertebrates,invertebrates
1
Reoviridae,Orbivirus,Epizootic hemorrhagic
seg. 4
AM745060

disease virus (serotype 8/

disease virus

strain CPR 3961A)

Epizootic hemorrhagic
NC_013400
vertebrates,invertebrates
1
Reoviridae,Orbivirus,Epizootic hemorrhagic
seg. 5
AM745061

disease virus (serotype 8/

disease virus

strain CPR 3961A)

Epizootic hemorrhagic
NC_013401
vertebrates,invertebrates
1
Reoviridae,Orbivirus,Epizootic hemorrhagic
seg. 6
AM745062

disease virus (serotype 8/

disease virus

strain CPR 3961A)

Epizootic hemorrhagic
NC_013402
vertebrates,invertebrates
1
Reoviridae,Orbivirus,Epizootic hemorrhagic
seg. 7
AM745063

disease virus (serotype 8/

disease virus

strain CPR 3961A)

Epizootic hemorrhagic
NC_013403
vertebrates,invertebrates
1
Reoviridae,Orbivirus,Epizootic hemorrhagic
seg. 8
AM745064

disease virus (serotype 8/

disease virus

strain CPR 3961A)

Epizootic hemorrhagic
NC_013404
vertebrates,invertebrates
1
Reoviridae,Orbivirus,Epizootic hemorrhagic
seg. 9
AM745065

disease virus (serotype 8/

disease virus

strain CPR 3961A)

Epizootic hemorrhagic
NC_013405
vertebrates,invertebrates
1
Reoviridae,Orbivirus,Epizootic hemorrhagic
seg.
AM745066

disease virus (serotype 8/

disease virus
10

strain CPR 3961A)

Epizootic hemorrhagic
NC_013398
vertebrates,invertebrates
1
Reoviridae,Orbivirus,Epizootic hemorrhagic
seg. 3
M76616

disease virus 1

disease virus

Epizootic hemorrhagic
NC_013401
vertebrates,invertebrates
1
Reoviridae,Orbivirus,Epizootic hemorrhagic
seg. 6
L27647

disease virus 1

disease virus

Epizootic hemorrhagic
NC_013402
vertebrates,invertebrates
6
Reoviridae,Orbivirus,Epizootic hemorrhagic
seg. 7
AY261511,AY261510

disease virus 1

disease virus

,AY261509,AY26150

7,AY261508,AY2615

06

Epizootic hemorrhagic
NC_013403
vertebrates,invertebrates
1
Reoviridae,Orbivirus,Epizootic hemorrhagic
seg. 8
L31764

disease virus 1

disease virus

Epizootic hemorrhagic
NC_013405
vertebrates,invertebrates
1
Reoviridae,Orbivirus,Epizootic hemorrhagic
seg.
L29023

disease virus 1

disease virus
10

Epizootic hemorrhagic
NC_013397
vertebrates,invertebrates
11
Reoviridae,Orbivirus,Epizootic hemorrhagic
seg. 2
AB078624,L33824,L3

disease virus 2

disease virus

3821,L33825,AB0786

32,L33823,AB078620

,L33818,AB078628,L

33822,L33826

Epizootic hemorrhagic
NC_013398
vertebrates,invertebrates
5
Reoviridae,Orbivirus,Epizootic hemorrhagic
seg. 3
AB078629,L33820,L3

disease virus 2

disease virus

3819,AB078621,AB0

78625

Epizootic hemorrhagic
NC_013400
vertebrates,invertebrates
1
Reoviridae,Orbivirus,Epizootic hemorrhagic
seg. 5
AB078633

disease virus 2

disease virus

Epizootic hemorrhagic
NC_013401
vertebrates,invertebrates
5
Reoviridae,Orbivirus,Epizootic hemorrhagic
seg. 6
AB078626,L27648,M

disease virus 2

disease virus

69085,AB078622,AB

078630

Epizootic hemorrhagic
NC_013402
vertebrates,invertebrates
40
Reoviridae,Orbivirus,Epizootic hemorrhagic
seg. 7
AY261505,AY261492

disease virus 2

disease virus

,AY261480,AY26149

8,AY261500,AY2614

96,AY261491,AY261

486,AB078623,AY26

1489,AY261485,AY2

61490,AY261502,AY

261494,AB078631,A

Y261475,AY261497,

AY261487,AY261495

,AY261476,AY26146

9,AY261504,AY2615

03,AY261488,AY261

482,AY261477,AY26

1479,AY261471,AY2

61483,AY261473,AY

261481,AY261478,A

Y261499,AY261470,

AY261472,AB078627

,AY261474,AY26149

3,AY261501,AY2614

84

Epizootic hemorrhagic
NC_013403
vertebrates,invertebrates
3
Reoviridae,Orbivirus,Epizootic hemorrhagic
seg. 8
M69091,AB084285,L

disease virus 2

disease virus

31765

Epizootic hemorrhagic
NC_013405
vertebrates,invertebrates
1
Reoviridae,Orbivirus,Epizootic hemorrhagic
seg.
L29022

disease virus 2

disease virus
10

Epizootic hemorrhagic
NC_013398
vertebrates,invertebrates
1
Reoviridae,Orbivirus,Epizootic hemorrhagic
seg. 3
KC986825

disease virus 6

disease virus

Epizootic hemorrhagic
NC_013401
vertebrates,invertebrates
1
Reoviridae,Orbivirus,Epizootic hemorrhagic
seg. 6
KC986823

disease virus 6

disease virus

Epizootic hemorrhagic
NC_013402
vertebrates,invertebrates
1
Reoviridae,Orbivirus,Epizootic hemorrhagic
seg. 7
KC986824

disease virus 6

disease virus

Fort Morgan virus
NC_013528
vertebrates,invertebrates
1
Togaviridae,Alphavirus,Fort Morgan virus
—
GQ281603

Getah virus
NC_006558
vertebrates,invertebrates
7
Togaviridae,Alphavirus,Getah virus
—
EU015061,AY702913

,EF631998,EU01506

2,AB859822,EU0150

63,EF631999

Highlands J virus
NC_012561
vertebrates,invertebrates
3
Togaviridae,Alphavirus,Highlands J virus
—
GU167952,GQ22778

9,FJ827631

lbaraki virus
NC_013396
vertebrates,invertebrates
1
Reoviridae,Orbivirus,Epizootic hemorrhagic
seg. 1
AB186040

disease virus

Midway virus
NC_012702
vertebrates,invertebrates
1
Midway virus
—
FJ554525

Mobuck virus
NC_022620
vertebrates,invertebrates
1
Reoviridae,Orbivirus,Mobuck virus
seg.
KF296323

segme

n2

Mobuck virus
NC_022621
vertebrates,invertebrates
1
Reoviridae,Orbivirus,Mobuck virus
seg.
KF296325

segme

n4

Mobuck virus
NC_022622
vertebrates,invertebrates
1
Reoviridae,Orbivirus,Mobuck virus
seg.
KF296327

n6

Mobuck virus
NC_022623
vertebrates,invertebrates
1
Reoviridae,Orbivirus,Mobuck virus
seg.
KF296328

segme

n7

Mobuck virus
NC_022624
vertebrates,invertebrates
1
Reoviridae,Orbivirus,Mobuck virus
seg.
KF296330

segme

n9

Mobuck virus
NC_022625
vertebrates,invertebrates
1
Reoviridae,Orbivirus,Mobuck virus
seg.
KF296331

10

Mobuck virus
NC_022626
vertebrates,invertebrates
1
Reoviridae,Orbivirus,Mobuck virus
seg.
KF296322

segme

n1

Mobuck virus
NC_022627
vertebrates,invertebrates
1
Reoviridae,Orbivirus,Mobuck virus
seg.
KF296324

segme

n3

Mobuck virus
NC_022628
vertebrates,invertebrates
1
Reoviridae,Orbivirus,Mobuck virus
seg.
KF296326

segme

n5

Mobuck virus
NC_022629
vertebrates,invertebrates
1
Reoviridae,Orbivirus,Mobuck virus
seg.
KF296329

segme

n8

Ndumu virus
NC_016959
vertebrates,invertebrates
1
Togaviridae,Alphavirus,Ndumu virus
—
HM147989

Nodamura virus
NC_002690
vertebrates,invertebrates
1
Nodaviridae,Alphanodavirus,Nodamura virus
seg.
AF174533

RNA
1

Nodamura virus
NC_002691
vertebrates,invertebrates
2
Nodaviridae,Alphanodavirus,Nodamura virus
seg.
AF174534,X15961

RNA
2

Nyamanini virus
NC_012703
vertebrates,invertebrates
1
Nyamanini virus
—
FJ554526

Ockelbo virus
NC_001547
vertebrates,invertebrates
1
Togaviridae,Alphavirus,Sindbjs virus
—
M69205

Palyam virus
NC_005986
vertebrates,invertebrates
1
Reoviridae,Orbivirus,Palyam virus
seg. 2
AB014725

Palyam virus
NC_005987
vertebrates,invertebrates
1
Reoviridae,Orbivirus,Palyam virus
seg. 6
AB014726

Palyam virus
NC_005988
vertebrates,invertebrates
1
Reoviridae,Orbivirus,Palyam virus
seg. 7
AB014727

Palyam virus
NC_005989
vertebrates,invertebrates
1
Reoviridae,Orbivirus,Palyam virus
seg. 3
AB014728

Palyam virus
NC_005990
vertebrates,invertebrates
1
Reoviridae,Orbivirus,Palyam virus
seg. 1
AB018086

Palyam virus
NC_005991
vertebrates,invertebrates
1
Reoviridae,Orbivirus,Palyam virus
seg. 4
AB018087

Palyam virus
NC_005992
vertebrates,invertebrates
1
Reoviridae,Orbivirus,Palyam virus
seg. 9
AB018088

Palyam virus
NC_005993
vertebrates,invertebrates
1
Reoviridae,Orbivirus,Palyam virus
seg. 5
AB018089

Palyam virus
NC_005994
vertebrates,invertebrates
1
Reoviridae,Orbivirus,Palyam virus
seg. 8
AB018090

Palyam virus
NC_005995
vertebrates,invertebrates
1
Reoviridae,Orbivirus,Palyam virus
seg.
AB018091

10

Peruvian horse sickness
NC_007748
vertebrates,invertebrates
1
Reoviridae,Orbivirus,Peruvian horse sickness
seg. 1
DQ248057

virus

virus

Peruvian horse sickness
NC_007749
vertebrates,invertebrates
1
Reoviridae,Orbivirus,Peruvian horse sickness
seg. 2
DQ248058

virus

virus

Peruvian horse sickness
NC_007750
vertebrates,invertebrates
1
Reoviridae,Orbivirus,Peruvian horse sickness
seg. 3
DQ248059

virus

virus

Peruvian horse sickness
NC_007751
vertebrates,invertebrates
1
Reoviridae,Orbivirus,Peruvian horse sickness
seg. 4
DQ248060

virus

virus

Peruvian horse sickness
NC_007752
vertebrates,invertebrates
1
Reoviridae,Orbivirus,Peruvian horse sickness
seg. 6
DQ248061

virus

virus

Peruvian horse sickness
NC_007753
vertebrates,invertebrates
2
Reoviridae,Orbivirus,Peruvian horse sickness
seg. 9
DQ248062,FJ225398

virus

virus

Peruvian horse sickness
NC_007754
vertebrates,invertebrates
1
Reoviridae,Orbivirus,Peruvian horse sickness
seg. 8
DQ248063

virus

virus

Peruvian horse sickness
NC_007755
vertebrates,invertebrates
1
Reoviridae,Orbivirus,Peruvian horse sickness
seg. 5
DQ248064

virus

virus

Peruvian horse sickness
NC_007756
vertebrates,invertebrates
1
Reoviridae,Orbivirus,Peruvian horse sickness
seg. 7
DQ248065

virus

virus

Peruvian horse sickness
NC_007757
vertebrates,invertebrates
2
Reoviridae,Orbivirus,Peruvian horse sickness
seg.
FJ225399,DQ248066

virus

virus
10

Salmon pancreas disease
NC_003930
vertebrates,invertebrates
1
Togaviridae,Alphavirus,Salmon pancreas

AJ316244

virus
,NC_00343

disease virus

3

Salmonid alphavirus
NC_003930
vertebrates,invertebrates
9
Togaviridae,Alphavirus,Salmon pancreas
—
KC122926,KC122919

subtype 3
,NC_00343

disease virus

,KC122923,KC12291

3

8,KC122920,KC1229

25,KC122922,KC122

924,KC122921

Semliki forest virus
NC_003215
vertebrates,invertebrates
7
Togaviridae,Alphavirus,Semliki forest virus
—
DQ189084,XQ4129,D

0189086,Z48163,DQ

189082,EU350586,A

Y112987

Sindbjs virus
NC_001547
vertebrates,invertebrates
14
Togaviridae,Alphavirus,Sindbjs virus
—
AF429428,KF737350,

JQ771793,JQ771797,

JQ771798,JQ771795,

JX570540,GU361116

,JQ2363,GU361118,A

F103728,JQ771794,J

0771799,JQ771796

Sindbjs-like virus
NC_001547
vertebrates,invertebrates
2
Togaviridae,Alphavirus,Sindbjs virus
—
U38304,U38305

Sindbjs-like virus YN87448
NC_001547
vertebrates,invertebrates
1
Togaviridae,Alphavirus,Sindbjs virus
—
AF103734

Southern elephant seal
NC_016960
vertebrates,invertebrates
1
Togaviridae,Alphavirus,Southern elephant
—
HM147990

virus

seal virus

St Croix River virus
NC_005997
vertebrates,invertebrates
1
Reoviridae,Orbivirus,St Croix River virus
seg. 1
AF133431

St Croix River virus
NC_005998
vertebrates,invertebrates
1
Reoviridae,Orbivirus,St Croix River virus
seg. 2
AF133432

St Croix River virus
NC_005999
vertebrates,invertebrates
1
Reoviridae,Orbivirus,St Croix River virus
seg. 3
AF145400

St Croix River virus
NC_006000
vertebrates,invertebrates
1
Reoviridae,Orbivirus,St Croix River virus
seg. 4
AF145401

St Croix River virus
NC_006001
vertebrates,invertebrates
1
Reoviridae,Orbivirus,St Croix River virus
seg. 5
AF145402

St Croix River virus
NC_006002
vertebrates,invertebrates
1
Reoviridae,Orbivirus,St Croix River virus
seg. 6
AF145403

St Croix River virus
NC_006003
vertebrates,invertebrates
1
Reoviridae,Orbivirus,St Croix River virus
seg. 7
AF145404

St Croix River virus
NC_006004
vertebrates,invertebrates
1
Reoviridae,Orbivirus,St Croix River virus
seg. 8
AF145405

St Croix River virus
NC_006005
vertebrates,invertebrates
1
Reoviridae,Orbivirus,St Croix River virus
seg. 9
AF145406

St Croix River virus
NC_006006
vertebrates,invertebrates
1
Reoviridae,Orbivirus,St Croix River virus
seg.
AF145407

10

Stretch Lagoon orbivirus
NC_012754
vertebrates,invertebrates
1
Reoviridae,Orbivirus,Stretch Lagoon orbivirus
seg. 1
EU718676

Stretch Lagoon orbivirus
NC_012755
vertebrates,invertebrates
1
Reoviridae,Orbivirus,Stretch Lagoon orbivirus
seg. 2
EU718677

Venezuelan equine
NC_001449
vertebrates,invertebrates
132
Togaviridae,Alphavirus,Venezuelan equine
—
U55362,KC344436,U

encephalitis virus

encephalitis virus

55360,KC344447,AF

075255,AF375051,K

C344486,L01442,KC

344510,KC344519,K

C344449,U55345,JQ4

332,KC344475,AF07

5251,KC344501,KC3

44471,AF069903,KC

344491,KC344490,K

C344430,U55350,KC

344455,KC344431,K

C344469,KC344478,

KC344446,KC344509

,KC344482,KC34446

2,AF075254,AF10056

6,AF004472,KC3445

26,KC344438,KC344

429,KC344498,KC34

4458,AF075259,KC3

44433,KC344450,KC

344443,KC344522,K

C344439,KC344485,

KC344483,U55347,K

C344467,AF075252,

KC344466,KC344441

,KC344484,KC34452

4,KC344503,KC3444

93,AY823299,KC344

495,KC344465,KC34

4474,AF004458,KC3

44513,KC344525,KC

344461,KC344442,K

C344473,KC344440,

KC344487,AF075257

,AF075258,KC34450

5,KC344437,KC3445

27,AF075256,KC344

489,KC344457,KC34

4445,KC344502,KC3

44460,KC344518,KC

344528,KC344453,K

C344515,KC344506,

AY986475,KC344444

,KC344468,KC34447

9,KC344464,KC3444

72,L04653,KC344463

,U55342,AY741139,D

0390224,KC344435,

AF075253,KC344432

,KC344499,KC34445

1,L01443,KC344452,

KC344496,KC344481

,KC344508,KC34445

6,KC344523,KC3444

88,KC344517,KC344

511,KC344494,KC34

4448,KC344514,KC3

44507,KC344480,AY

973944,KC344504,K

C344521,KC344470,

KC344492,KC344454

,KC344476,KC34450

0,KC344512,KC3445

20,AF004459,KC344

459,KC344516,KC34

4497,KC344477,KC3

44434,KF985959,L00

930

Wallal virus
NC_022553
vertebrates,invertebrates
1
Reoviridae,Orbivirus,Wallal virus
seg. 1
KF234259

Wallal virus
NC_022554
vertebrates,invertebrates
1
Reoviridae,Orbivirus,Wallal virus
seg.
KF234260

segme

n2

Wallal virus
NC_022555
vertebrates,invertebrates
1
Reoviridae,Orbivirus,Wallal virus
seg. 3
KF234261

Wallal virus
NC_022556
vertebrates,invertebrates
1
Reoviridae,Orbivirus,Wallal virus
seg.
KF234263

segme

n5

Wallal virus
NC_022557
vertebrates,invertebrates
1
Reoviridae,Orbivirus,Wallal virus
seg.
KF234265

segme

n7

Wallal virus
NC_022558
vertebrates,invertebrates
1
Reoviridae,Orbivirus,Wallal virus
seg.
KF234267

segme

n9

Wallal virus
NC_022559
vertebrates,invertebrates
1
Reoviridae,Orbivirus,Wallal virus
seg.
KF234268

10

Wallal virus
NC_022560
vertebrates,invertebrates
1
Reoviridae,Orbivirus,Wallal virus
seg.
KF234262

segme

n4

Wallal virus
NC_022561
vertebrates,invertebrates
1
Reoviridae,Orbivirus,Wallal virus
seg.
KF234264

segme

n6

Wallal virus
NC_022562
vertebrates,invertebrates
1
Reoviridae,Orbivirus,Wallal virus
seg.
KF234266

segme

n8

Western equine
NC_003908
vertebrates,invertebrates
9
Togaviridae,Alphavirus,Western equine
—
AF214040,GQ287640

encephalomyelitis virus

encephalitis virus

,GQ287641,GQ28764

5,GQ287643,GQ2876

44,GQ287642,GQ287

647,GQ287646

Whataroa virus
NC_016961
vertebrates,invertebrates
1
Togaviridae,Alphavirus,Whataroa virus
—
HM147993

Yunnan orbivirus
NC_007656
vertebrates,invertebrates
1
Reoviridae,Orbivirus,Yunnan orbivirus
seg. 1
AY701509

Yunnan orbivirus
NC_007657
vertebrates,invertebrates
1
Reoviridae,Orbivirus,Yunnan orbivirus
seg. 2
AY701510

Yunnan orbivirus
NC_007658
vertebrates,invertebrates
1
Reoviridae,Orbivirus,Yunnan orbivirus
seg. 3
AY701511

Yunnan orbivirus
NC_007659
vertebrates,invertebrates
1
Reoviridae,Orbivirus,Yunnan orbivirus
seg. 4
AY701512

Yunnan orbivirus
NC_007660
vertebrates,invertebrates
1
Reoviridae,Orbivirus,Yunnan orbivirus
seg. 5
AY701513

Yunnan orbivirus
NC_007661
vertebrates,invertebrates
1
Reoviridae,Orbivirus,Yunnan orbivirus
seg. 6
AY701514

Yunnan orbivirus
NC_007662
vertebrates,invertebrates
1
Reoviridae,Orbivirus,Yunnan orbivirus
seg. 7
AY701515

Yunnan orbivirus
NC_007663
vertebrates,invertebrates
1
Reoviridae,Orbivirus,Yunnan orbivirus
seg. 8
AY701516

Yunnan orbivirus
NC_007664
vertebrates,invertebrates
2
Reoviridae,Orbivirus,Yunnan orbivirus
seg. 9
AY701517,FJ225402

Yunnan orbivirus
NC_007665
vertebrates,invertebrates
1
Reoviridae,Orbivirus,Yunnan orbivirus
seg.
AY701518

10

Aedes flavivirus
NC_012932
vertebrates,invertebrates,
2
Flaviviridae,Flavivirus,Aedes flavivirus
—
KC181923,AB488408

human

Aguacate virus
NC_015450
vertebrates,invertebrates,
1
Bunyaviridae,Phlebovirus,Aguacate virus
seg. M
HM566137

human

Aguacate virus
NC_015451
vertebrates,invertebrates,
1
Bunyaviridae,Phlebovirus,Aguacate virus
seg. L
HM566138

human

Aguacate virus
NC_015452
vertebrates,invertebrates,
1
Bunyaviridae,Phlebovirus,Aguacate virus
seg. S
HM566139

human

Aino virus
NC_018459
vertebrates,invertebrates,
1
Bunyaviridae,Orthobunyavirus,Shuni virus
seg. M
HE795088

human

Aino virus
NC_018460
vertebrates,invertebrates,
1
Bunyaviridae,Orthobunyavirus,Shuni virus
seg. S
HE795089

human

Aino virus
NC_018465
vertebrates,invertebrates,
1
Bunyaviridae,Orthobunyavirus,Shuni virus
seg. L
HE795087

human

Akabane virus
NC_009894
vertebrates,invertebrates,
2
Bunyaviridae,Orthobunyavirus,Akabane virus
seg. L
JQ308779,AB190458

human

Akabane virus
NC_009895
vertebrates,invertebrates,
42
Bunyaviridae,Orthobunyavirus,Akabane virus
seg. M
AB297833,AB289324

human

,AB297822,AB29783

7,AB297831,AB2978

19,AB297844,AB297

839,AB426282,AB29

7834,AB297827,AB2

97821,AB297841,AB

297838,AB297824,A

B297842,AB297823,

AB297825,AB297845

,AB297829,AB29785

1,AB436954,AB2978

35,AB297828,AB297

850,AB297826,AB29

7832,AB297840,AB3

73233,AB297847,AB

297843,AB289323,A

B426281,AB100604,

AB297820,AB297846

,AB297836,AB29781

8,AB297849,AB2893

22,AB297848,AB297

830

Akabane virus
NC_009896
vertebrates,invertebrates,
21
Bunyaviridae,Orthobunyavirus,Akabane virus
seg. S
AB289319,AB426275

human

,AB426277,AB42627

4,AB289320,AB0008

51,AB426278,AB426

272,AF034939,AB373

232,AB373234,AB42

6279,AB426276,AF52

9883,AB426273,AB4

26271,AB426280,AF0

34942,AF034941,AF0

34940,AB289321

Alenquer virus
NC_015373
vertebrates,invertebrates,
1
Bunyaviridae,Phlebovirus,Candiru virus
seg. M
HM119402

human

Alenquer virus
NC_015374
vertebrates,invertebrates,
1
Bunyaviridae,Phlebovirus,Candiru virus
seg. L
HM119401

human

Alenquer virus
NC_015375
vertebrates,invertebrates,
1
Bunyaviridae,Phlebovirus,Candiru virus
seg. S
HM119403

human

Alfuy virus
NC_000943
vertebrates,invertebrates,
1
Flaviviridae,Flavivirus,Murray Valley
—
AY898809

human

encephalitis virus

Alkhumra hemorrhagic
NC_004355
vertebrates,invertebrates,
19
Flaviviridae,Flavivirus,Kyasanur forest disease
—
JF416955,JF416950,

fever virus

human

virus

JF416963,JF416956,

JX271893,JF416954,

JF416951,JN860200,

JF416961,JF416964,

JF416957,JF416967,

JF416949,JF416966,

JF416953,JF416965,

JX271892,JF416962,

JF416952

Alkhurma hemorrhagic
NC_004355
vertebrates,invertebrates,
1
Flaviviridae,Flavivirus,Kyasanur forest disease
—
AF331718

fever virus

human

virus

Alphavirus M1
NC_001544
vertebrates,invertebrates,
1
Togaviridae,Alphavirus,Ross River virus
—
EF011023

human

Apoi virus
NC_003676
vertebrates,invertebrates,
1
Flaviviridae,Flavivirus,Apoi virus
—
AF160193

human

Ariquemes virus
NC_015373
vertebrates,invertebrates,
1
Bunyaviridae,Phlebovirus,Candiru virus
seg. M
HM119405

human

Ariquemes virus
NC_015374
vertebrates,invertebrates,
1
Bunyaviridae,Phlebovirus,Candiru virus
seg. L
HM119404

human

Ariquemes virus
NC_015375
vertebrates,invertebrates,
1
Bunyaviridae,Phlebovirus,Candiru virus
seg. S
HM119406

human

Armero virus
NC_015450
vertebrates,invertebrates,
1
Bunyaviridae,Phlebovirus,Aguacate virus
seg. M
HQ661806

human

Armero virus
NC_015451
vertebrates,invertebrates,
2
Bunyaviridae,Phlebovirus,Aguacate virus
seg. L
HM566140,HQ66180

human
5

Armero virus
NC_015452
vertebrates,invertebrates,
2
Bunyaviridae,Phlebovirus,Aguacate virus
seg. S
HM566142,HQ66180

human
7

Aroa virus
NC_009026
vertebrates,invertebrates,
1
Flaviviridae,Flavivirus,Aroa virus
—
AY632536

human

Bagaza virus
NC_012534
vertebrates,invertebrates,
4
Flaviviridae,Flavivirus,Bagaza virus
—
AY632545,EU684972

human

,HQ644143,HQ64414

4

Banna virus
NC_004211
vertebrates,invertebrates,
2
Reoviridae,Seadornavirus,Banna virus
seg. 1
AF133430,AF168005

human

Banna virus
NC_004217
vertebrates,invertebrates,
3
Reoviridae,Seadornavirus,Banna virus
seg. 2
AF134528,AF134526,

human

AF134514

Banna virus
NC_004218
vertebrates,invertebrates,
2
Reoviridae,Seadornavirus,Banna virus
seg. 3
AF134515,AY549307

human

Banna virus
NC_004219
vertebrates,invertebrates,
3
Reoviridae,Seadornavirus,Banna virus
seg. 4
EU265698,AY549308

human

,AF134516

Banna virus
NC_004220
vertebrates,invertebrates,
2
Reoviridae,Seadornavirus,Banna virus
seg. 5

AF134517,AY549309

human

Banna virus
NC_004221
vertebrates,invertebrates,
1
Reoviridae,Seadornavirus,Banna virus
seg. 6
AF134521,AF168006,

5

human

AF134527,AF134524,

AF134518

Batai virus
NC_001926
vertebrates,invertebrates,
1
Bunyaviridae,Orthobunyavirus,Bunyamwera
seg. M
DQ436460

human

virus

Batai virus
NC_001927
vertebrates,invertebrates,
1
Bunyaviridae,Orthobunyavirus,Bunyamwera
seg. S
X73464

human

virus

Birao virus
NC_001927
vertebrates,invertebrates,
1
Bunyaviridae,Orthobunyavirus,Bunyamwera
seg. S
AM711131

human

virus

Bozo virus
NC_001927
vertebrates,invertebrates,
1
Bunyaviridae,Orthobunyavirus,Bunyamwera
seg. S
AM711132

human

virus

Brazoran virus
NC_022037
vertebrates,invertebrates,
1
Bunyaviridae,Orthobunyavirus,Brazoran virus
seg. S
KC854416

human

Brazoran virus
NC_022038
vertebrates,invertebrates,
1
Bunyaviridae,Orthobunyavirus,Brazoran virus
seg. M
KC854417

human

Brazoran virus
NC_022039
vertebrates,invertebrates,
1
Bunyaviridae,Orthobunyavirus,Brazoran virus
seg. L
KC854418

human

Bunyamwera virus
NC_001925
vertebrates,invertebrates,
1
Bunyaviridae,Orthobunyavirus,Bunyamwera
seg. L
X14383

human

virus

Bunyamwera virus
NC_001926
vertebrates,invertebrates,
1
Bunyaviridae,Orthobunyavirus,Bunyamwera
seg. M
M11852

human

virus

Bunyamwera virus
NC_001927
vertebrates,invertebrates,
4
Bunyaviridae,Orthobunyavirus,Bunyamwera
seg. S
DQ0353,AM711130,A

human

virus

M709778,AF325122

Cache Valley virus
NC_001926
vertebrates,invertebrates,
2
Bunyaviridae,Orthobunyavirus,Bunyamwera
seg. M
AF082739,AF082576

human

virus

Cache Valley virus
NC_001927
vertebrates,invertebrates,
1
Bunyaviridae,Orthobunyavirus,Bunyamwera
seg. S
X73465

human

virus

California encephalitis virus
NC_004109
vertebrates,invertebrates,
1
Bunyaviridae,Orthobunyavirus,California
seg. M
AF123483

human

encephalitis virus

California encephalitis virus
NC_004110
vertebrates,invertebrates,
2
Bunyaviridae,Orthobunyavirus,California
seg. S
U12797,U12800

human

encephalitis virus

Candiru virus
NC_015373
vertebrates,invertebrates,
1
Bunyaviridae,Phlebovirus,Candiru virus
seg. M
HM119408

human

Candiru virus
NC_015374
vertebrates,invertebrates,
1
Bunyaviridae,Phlebovirus,Candiru virus
seg. L
HM119407

human

Candiru virus
NC_015375
vertebrates,invertebrates,
1
Bunyaviridae,Phlebovirus,Candiru virus
seg. S
HM119409

human

Cell fusing agent virus
NC_001564
vertebrates,invertebrates,
1
Flaviviridae,Flavivirus,Cell fusing agent virus
—
M91671

human

Chaoyang virus
NC_017086
vertebrates,invertebrates,
2
Flaviviridae,Flavivirus,Chaoyang virus
—
JQ068102,JQ308185

human

Chatanga virus
NC_004108
vertebrates,invertebrates,
1
Bunyaviridae,Orthobunyavirus,California
seg. L
EU616903

human

encephalitis virus

Chatanga virus
NC_004109
vertebrates,invertebrates,
1
Bunyaviridae,Orthobunyavirus,California
seg. M
EU621834

human

encephalitis virus

Chikungunya virus
NC_004162
vertebrates,invertebrates,
161
Togaviridae,Alphavirus,Chikungunya virus
—
GQ42821 1,FR717336

human

,HM045789,JQ06762

4,FJ445510,FJ51365

4,GU301781,GU1993

51,FN295485,HM045

819,FJ445463,HM04

5787,HM045796,JQ8

61256,AM258994,FJ8

07899,HM045812,HM

045814,HE806461,J

0861253,HQ456253,

HM045803,EF027137

,EF027139,HM04579

0,FJ513637,AY72673

2,AM258991,EU7037

60,HM045820,GU301

780,JF274082,HM04

5816,FJ445431,HQ84

6357,HM045802,EU5

64335,GU301779,HM

045821,GU199350,H

0846356,FJQ00066,F

J513632,FJ445428,F

JQ00069,KC862329,J

0861260,FJ445433,F

J513629,HM045811,

HM045807,GU01352

9,FR717337,HM0458

13,HM045797,AM258

995,GU199352,FJ513

635,AM258992,HM04

5798,FJ513645,HQ84

6358,FJ445427,DQ44

3544,EF027136,EU7

03759,HQ456251,AF

369024,FJ513628,EF

452493,FJ445432,FN

295483,FJQ00062,GU

189061,HM045795,E

U703761,HQ846359,

FJQ00067,GQ428214

,HQ456252,GU19935

3,FJQ00064,HM0458

10,HM045822,HM045

823,FJ513673,FN295

487,JQ861254,EF210

157,HM045791,JQ86

1257,FJ445443,EF02

7141,JN558836,HMO

45805,FJQ00063,HM

045806,HM045786,E

F027135,GQ428215,

HM045817,HM04581

5,FN295484,FJ80789

8,EU372006,GQ4282

13,EF452494,FJ5136

75,HM045818,JN558

835,HM045801,GQ42

8212,GQ905863,HMO

45784,AF490259,EFO

27134,HQ456255,GU

013528,FJ959103,JQ

861258,FJ513679,H

M045793,EU703762,

HM045785,FJQ00068

,FJQ00065,FJ445430,

HM045804,FJ445426

,HM045809,AM25899

3,FJ807896,HM0457

99,HM045808,L3766

1,FJ445502,FJ44548

4,FJ807897,JN55883

4,AB455493,EF01235

9,EU244823,HM0458

00,FJ445511,HQ4562

54,HM045792,FJ513

657,GQ428210,HMO4

5788,GU908223,FJ44

5445,EF027140,KF31

8729,AM258990,EU5

64334,GU013530,JX

088705,HM045794,

EF027138,AB455494,J

0861255

Chikungunya virus
NC_004162
vertebrates,invertebrates,
1
Togaviridae,Alphavirus,Chikungunya virus

EU037962

Wuerzburg

human

Chize virus
NC_005214
vertebrates,invertebrates,
1
Bunyaviridae,Phlebovirus,Uukuniemi virus
seg. L
JF838324

human

Chize virus
NC_005220
vertebrates,invertebrates,
1
Bunyaviridae,Phlebovirus,Uukuniemi virus
seg. M
JF838325

human

Chize virus
NC_005221
vertebrates,invertebrates,
1
Bunyaviridae,Phlebovirus,Uukuniemi virus
seg. S
JF838326

human

Colorado tick fever virus
NC_004180
vertebrates,invertebrates,
1
Reoviridae,Coltivirus,Colorado tick fever virus
seg. 9
AF000720

human

Colorado tick fever virus
NC_004181
vertebrates,invertebrates,
1
Reoviridae,Coltivirus,Colorado tick fever virus
seg. 1
AF133428

human

Colorado tick fever virus
NC_004182
vertebrates,invertebrates,
1
Reoviridae,Coltivirus,Colorado tick fever virus
seg. 2
AF139758

human

Colorado tick fever virus
NC_004183
vertebrates,invertebrates,
1
Reoviridae,Coltivirus,Colorado tick fever virus
seg. 3
AF139759

human

Colorado tick fever virus
NC_004184
vertebrates,invertebrates,
1
Reoviridae,Coltivirus,Colorado tick fever virus
seg. 4
AF139760

human

Colorado tick fever virus
NC_004185
vertebrates,invertebrates,
1
Reoviridae,Coltivirus,Colorado tick fever virus
seg. 5
AF139761

human

Colorado tick fever virus
NC_004186
vertebrates,invertebrates,
1
Reoviridae,Coltivirus,Colorado tick fever virus
seg. 6
AF139762

human

Colorado tick fever virus
NC_004187
vertebrates,invertebrates,
1
Reoviridae,Coltivirus,Colorado tick fever virus
seg. 7
AF139763

human

Colorado tick fever virus
NC_004188
vertebrates,invertebrates,
1
Reoviridae,Coltivirus,Colorado tick fever virus
seg. 8
AF139764

human

Colorado tick fever virus
NC_004189
vertebrates,invertebrates,
1
Reoviridae,Coltivirus,Colorado tick fever virus
seg.
AF139765

human

10

Colorado tick fever virus
NC_004190
vertebrates,invertebrates,
1
Reoviridae,Coltivirus,Colorado tick fever virus
seg.
U53227

human

12

Colorado tick fever virus
NC_004191
vertebrates,invertebrates,
1
Reoviridae,Coltivirus,Colorado tick fever virus
seg.
U72694

human

11

Crimean-Congo
NC_005302
vertebrates,invertebrates,
4
Bunyaviridae,Nairovirus,Crimean-Congo
seg. S
AF358784,AF354296,

Hemorrhagic Fever virus

human

hemorrhagic fever virus

AF362080,AY029157

strain China

Crimean-Congo
NC_005300
vertebrates,invertebrates,
50
Bunyaviridae,Nairovirus,Crimean-Congo
seg. M
DQ211634,DQ21163

hemorrhagic fever virus

human

hemorrhagic fever virus

7,DQ206448,HQ3781

85,HQ378187,AB069

675,AF350448,AB069

672,DQ094832,AB06

9670,JN572085,AF46

7769,DQ157174,DQ2

11625,AY900145,AJ5

38199,AB069673,DQ

211631,AY900144,A

B069671,DQ211630,

AB069669,DQ157175

,AY900143,AY22347

6,DQ211635,AY9001

41,DQ211632,AF467

768,AF350449,AY900

142,DQ21 1626,DQ44

6216,JN572086,AB06

9674,DQ211627,EU0

37902,DQ211628,JN

572084,AJ538197,JN

572083,DQ21 1633,U

39455,AY675511,AY

179962,HQ378184,A

Y179961,DQ211636,

DQ446215,DQ21162

9

Crimean-Congo
NC_005301
vertebrates,invertebrates,
32
Bunyaviridae,Nairovirus,Crimean-Congo
seg. L
HQ378182,DQ21162

hemorrhagic fever virus

human

hemorrhagic fever virus

1,EU044832,AY3895

08,AY947890,DQ076

412,DQ21 1620,DQ21

1616,DQ211613,AY9

47891,DQ211614,DQ

211617,AY675240,A

Y995166,DQ211615,

HQ378180,DQ21162

2,KC344855,DQ2116

24,DQ076417,DQ211

619,DQ211612,HQ37

8183,DQ099335,DQ2

11623,AY389361,AY

720893,AY422209,D

0076414,HQ378181,

DQ211618,AY422208

Crimean-Congo
NC_005302
vertebrates,invertebrates,
52
Bunyaviridae,Nairovirus,Crimean-Congo
seg. S
DQ227495,JN572088

hemorrhagic fever virus

human

hemorrhagic fever virus

,DQ076415,AY27767

2,DQ211639,AY2976

92,DQ446214,DQ217

602,U88414,DQ2116

42,DQ211647,U8841

3,JN572089,DQ2116

40,EF123122,JN5720

87,U88410,DQ21164

4,AF481799,AY04908

3,DQ076416,DQ2116

43,AJ538198,DQ076

413,DQ227496,DQ44

6213,DQ211638,AJO

10648,M86625,AF48

1802,DQ21 1649,U88

415,DQ206447,U049

58,AF415236,DQ211

645,AF527810,AY223

475,AY297691,AJQ10

649,U88412,DQ2116

46,DQ211641,DQ211

650,HQ3781 79,DQ44

6212,AJ538196,DQ2

11648,U8841 1,U8841

6,DQ133507,AY2776

76

Crimean-Congo
NC_005300
vertebrates,invertebrates,
1
Bunyaviridae,Nairovirus,Crimean-Congo
seg. M
AF338470

hemorrhagic fever virus

human

hemorrhagic fever virus

strain BA88166

Culex flavivirus
NC_008604
vertebrates,invertebrates,
22
Flaviviridae,Flavivirus,Culex flavivirus
—
FJ663034,AB701770,

human

AB701767,AB701775

,JQ308186,AB701769

AB701768,EU87906 0,

JQ308189,AB70176 6,

AB701774,AB7017 72,

AB377213,AB701 776,

HQ678513,AB70 1771,

JQ308187,JQ30

8190,AB262759,AB7

01773,JQ308188,FJ5

02995

Deer tick virus
NC_003687
vertebrates, invertebrates,
1
Flaviviridae,Flavivirus,Powassan virus
—
AF311056

human

Dengue virus
NC_002640,
vertebrates, invertebrates,
22
Flaviviridae,Flavivirus,Dengue virus
—
CS805346,CS479167,

NC_001475,
human

CS477304,CS477305,

NC_001474,

CS477264,CS479203,

NC_001477

JN054255,CS805343,

JN054256,CS477263,

CS477302,CS477265,

CS479165,CS479202,

CS479204,CS805344,

CS479206,CS479205,

CS805348,CS805345,

CS477306, CS805347

Dengue virus 1
NC_002640
vertebrates, invertebrates,
1456
Flaviviridae,Flavivirus,Dengue virus
—
EU482708,GU131721,

,NC_001475
human

HM181969,FJQ24443,

,NC_001474

FJ744701,GU056031,

NC_001477

HM488255,FJ8984 12,

FJ410186,FJ6398 02,

EU081229,KJ1893 62,

JQ045632,GQ199 842,

EU081244,FJ639 682,

JN638340,GU13 1827,

JQ915079,EUO 81254,

FJ410274,GU1 31834,

GQ868505,GQ 199800,

FJ432746,FJ 410206,

FJ410213,EU 482789,

GU 131695,G U131839,

GU131820,FJQ24447,

FJ639683,FJQ24439,

GQ 199849 , F J850099,

F J898408, GU131716,

GU13175 6,JQ915077,

GU1319 26,DQ672557,

GU131 749,JQ045664,

GQ19 9772,FJ410201,

FJ89 8418, JQ045642,

FJ46 1340,FJ432727,

HM1 81953,FJ639806,

JQ0 45658,GU131835,

FJ8 82531 ,AY732480,

KJ1 89303, FJ898420,

KF9 21911 ,JQ048541 ,

FJ8 50114,GQ199823,

HM 181949, AY732482,

JN819417,AY145122,

E U482615,GU131863,

EU081248,FJ639693,

FJ687433, FJ882533,

FJ882557,JQ045650,

FJ410204,EU482529,

AV732476,FJ882558,

FJ410179,GQ199797 ,

FJ410267,GU131770 ,

EF025110,FJ410194 ,

HQ891315,HM18193 6,

JQ045628,FJ37329

7,FJ639812,EU66039

7,GQ868539,EU6604

18,GQ868633,FJ639

685,EU596501,FJ461

308,JF937606,FJ205

874,AB195673,EU08

1241,AB608787,EU0

81276,KJ189354,FJ4

10181,KJ189336,JN6

97058,GQ199840,JQ

045631,EF457905,AF

514889,DQ285558,G

0199806,FJ882579,F

J882543,GQ868520,

EU081251,GU131893

,EU482795,EU08125

7,GU131751,FJ41023

6,GQ199814,GQ8686

12,EU677161,EU677

152,GU131681,KJ18

9321,GU131718,FJ85

0071,EU081250,GU1

31971,EU677160,GU

131779,HM631850,E

U482480,GQ199788,

FJQ24455,FJQ24472,

FJ432737,HM181945

,EU081263,GU13168

5,EU482534,FJQ2443

4,KF184975,FJ88255

4,FJ461324,EU48281

0,HM181965,EU0812

28,FJ906963,GU1319

79,FJ384655,GQ199

832,EU482478,GU13

1792,JF937598,KJ18

9325,FJ176780,FJ41

0254,FJ410214,GQ1

99785,GU131742,FJ1

82003,HQ332177,GU

131748,FJ898433,FJ

850073,FJ410209,EU

482804,GU131895,D

0672560,GQ199853,

GU131773,FJ810419,

FJ882528,FJ205881,

GQ199815,FJ432719

,JN205310,AB189120

,GU131782,FJQ24433

,GQ868632,FJ41021

6,GU131713,GU1319

58,GU131734,FJ8984

28,FJ410225,HG3164

82,FJ410180,KJ1893

68,GQ868537,HM181

937,FJ469908,EU660

419,KJ189302,FJQ24

431,EU482527,FJ410

248,FJ410175,FJ882

522,FJ547088,EU081

274,GU131964,EU48

2616,FJ410187,JN63

8341,EU482711,FJ41

0207,GU131833,EU6

77155,GQ868506,GQ

199808,EU081267,FJ

410238,KJ189342,EU

677164,FJ898384,KJ

189357,EU482528,G

U131706,KJ189335,F

J410220,GU131831,

EU081240,JQ045656

,FJ882555,FJQ24425,

FJ882536,GU056033,

GU131890,FJ182024,

JF937645,FJ882524,

EU081232,JQ045666

,HQ624983,GU13178

8,GU131762,EU4827

14,FJ461317,FJ8825

49,GU131961,GU131

714,HM469968,EU67

7170,EU482801,GU1

31772,GU131760,DQ

285562,GU131694,A

F311956,AY726552,F

J410230,FJ850103,J

0287662,GQ199802,

JF937597,EU596503,

JF937603,FJ182036,

FJ461307,HQ332182,

GU131682,EU482493

,FJ882518,HM18196

8,FJ205875,AY71347

3,GU131811,HM1819

55,FJQ24423,AY7324

79,FJ850090,FJ8984

31,FJ410253,EU6771

39,FJ410276,EU0812

49,GU131755,GU131

746,GQ868529,FJ88

2529,JQ915076,FJ88

2521,GU131704,FJ63

9677,AB608788,JF93

7612,GQ199851,FJ4

10182,FJ373305,FJ8

50102,DQ672562,FJO

24435,EU677174,GU

131806,EF122231,E

U482536,HM181966,

FJ410245,JF937651,

AY732481,GU131740

,KJ189334,FJ205882,

GU131744,AF350498

,KJ189341,EU482797

,GQ199833,GQ19981

1,DQ672558,FJ41026

4,FJ882534,JQ04565

2,FJ898398,FJ39038

2,JF937618,KJ18930

4,EU677150,GQ8685

67,FJ410240,FJQ244

48,FJ882559,GQ868

510,GQ868610,FJ41

0235,EU677176,EU4

82790,GU131699,EU

482824,JQ045662,AF

514883,FJ882538,H

M181944,GQ199786,

GQ199828,GU13195

7,EU596502,GQ8686

02,JN819423,FJ8983

87,FJ432744,FJ4613

10,KJ189322,GQ199

839,FJ182022,GQ19

9812,AY722803,FJO2

4444,GU131697,FJ89

8383,FJ182034,GU05

6032,HM181947,EU4

82812,GQ868561,FJ

639673,FJ410231,GU

131790,AF298808,H

G316481,FJ898382,

GQ868607,EU48248

7,FJ639687,EU48279

8,FJ547068,HQ33218

1,FJ410289,GU13168

0,FJ639691,GU13196

5,JF937602,AF51311

0,JN819415,GU1317

66,JQ675358,FJ4327

36,EU482591,AB178

040,FJ898416,GU131

803,FJ461327,FJ410

239,FJ898430,KF955

446,FJ639821,KJ189

367,JQ045648,FJ873

810,EU081246,GU13

1759,EU482715,FJ88

2526,GQ868605,GU1

31715,FJ850077,GU1

31810,FJ639688,FJ4

32732,GU131977,FJ4

61339,EU081226,GU

131817,GU131778,FJ

898429,EU482507,A

Y713476,FJ390383,H

M181961,JQ287663,

FJ639797,EU677172,

FJ898379,GQ199859

,FJ850100,GU131750

,HM469966,FJ54706

5,GQ199777,JF9376

14,GU131757,FJ4613

06,GQ868524,GU131

894,GQ199844,EU08

1270,FJ461336,JN63

8344,GQ199807,EU6

77154,GU131727,DQ

285559,EU660403,E

U677163,FJ205873,F

JQ24480,GU131919,F

JQ24445,EU482540,

GQ199816,FJ461316

,FJ898388,EU482793

,EU081231,JQ04566

7,GU131805,GU1317

84,FJ461313,FJ4102

34,JQ045638,EU081

265,FJ410188,AY835

999,FJ898413,HM18

1950,GQ199850,GU1

31722,KF921935,FJ8

98419,FJQ24436,FJ3

90381,FJQ24479,EU4

82491,AB074760,FJ8

98392,JF937650,KC1

31141,JQ915075,GU

131796,EU687251,E

U677173,GQ199781,

EU482809,FJ898397,

AF514885,EU677171

,FJ478458,FJ410275,

GU131783,EU482511

,GU131826,GQ86851

4,FJ410281,JQ04566

0,FJ882556,GU13170

8,GQ868535,HM4699

67,GQ199783,FJ432

723,FJ898422,EU482

828,GU131693,FJ562

106,GQ199771,GU13

1753,EU726779,GQ1

99846,FJ882515,FJ4

10174,GQ199792,EU

280167,FJ850093,HQ

166035,GQ199829,G

0868500,GU131728,

KJ189346,FJ432734,

FJ390374,JQ045636,

DQ672563,JQ045647

,FJ898376,FJQ24441,

GQ868618,JN638342

,GU131696,FJ882520

,FJ639735,HM18196

7,EU482817,GQ1998

31,JF937611,FJ4699

09,GQ199775,FJ410

192,JQ045626,FJ410

263,KJ189318,FJ182

027,GU131822,GQ86

8637,GQ868522,JF9

37619,FJ687428,GU1

31921,FJ410290,EU4

82592,FJ898374,GQ

868502,EU677140,G

U131764,EU482520,

GQ199824,GQ19982

1,FJ882516,GQ8686

14,GU131836,FJ8984

26,JF937609,EU4825

31,JQ915072,FJ6396

79,GU131980,GQ868

512,FJQ24485,KJ189

329,GU131687,FJ639

820,FJ410262,JQ045

649,AF514878,EU72

6777,JQ045668,EU0

81234,GQ199773,FJ

639678,FJ410198,KJ

189359,GU131963,G

0868525,FJ432739,

GQ199827,AB519681

,AY713475,FJ882563

,JQ045643,FJ639811

,FJQ24427,EU482820

,KJ189338,EU081262

,FJ410232,FJ461303,

FJ639672,FJ687430,

AY732474,JN903581,

FJ410279,GQ868639

,FJ461332,GUO56029

,EU482476,GQ19979

1,GU131889,GQ1998

43,JQ287664,EU081

260,KJ189332,FJ906

965,JQ045644,GU13

1769,EU249492,EU4

82516,JN819411,GQ

199799,JQ287660,JF

937613,AY726551,FJ

182031,DQ285560,G

U131798,GU131922,

GQ199836,KJ189327

,KJ189339,EU482796

,GQ199798,AY72280

2,FJ639676,GU13195

6,EU482823,EU4828

03,GU131774,HM181

954,AY708047,EU66

0394,EU482619,GQ1

99793,JN000935,GQ

868519,FJ410227,G

0868532,GQ868517,

GQ868560,FJ410255

,KJ189344,EU482537

,EU081271,FJ410185

,GQ868564,EU72678

1,KJ189337,FJ87380

9,EU081253,GU1318

18,HM181948,JQ045

665,FJ639694,FJ410

286,GU131887,GU13

1829,FJ882570,FJ63

9823,FJ461312,FJ88

2568,EU482501,FJ41

0273,JQ045630,GQ1

99805,GQ868513,FJ

410282,EU482819,FJ

410197,GU131786,K

J189345,GU131733,F

J898403,HQ891314,F

JQ24457,EU081238,K

J189348,FJ898377,E

U726780,HQ166036,

FJ898411,FJ410242,

FJ882540,GQ199810

,FJ882517,KJ189364,

JF937610,GU131812,

GQ868504,FJ410256

,GU131807,HM18196

4,AY722801,FJ18203

2,JQ045637,FJ43274

2,EU081256,FJ89839

9,GQ868501,FJ8983

89,EU482611,EU660

390,KJ189340,GU13

1698,GQ868530,FJO

24442,EU482490,FJO

24478,EU482513,GU

131830,FJ898400,G

0199780,GQ868559,

FJ898371,FJ461331,

FJ410284,JF937601,

FJQ24429,GQ868563

,FJ898423,GU131966

,GU131741,GU13182

3,GU131730,FJQ2445

1,EU179860,KJ18935

8,EU249494,JN69705

6,FJ547060,GU13184

2,GU131752,EU4828

06,GU131802,DQ672

559,EU482521,EU48

2815,KJ189366,KJ18

9347,EU081264,FJ88

2551,GU131809,FJ20

5876,GU131720,FJ20

5883,KC759167,GU1

31972,GQ868619,GU

131703,HM631855,K

C131140,HM181959,

AF514876,FJ432725,

JN638343,GQ199787

,EU482811,FJQ24437

,EF032590,FJ882542

,FJ461325,EU482525

,GU131799,JF937616

,FJ639681,DQ672556

,FJ182020,FJ898401,

JQ287661,FJ410247,

EU482822,EU482517

,EU660412,JQ04563

5,FJ859029,HM6318

52,JN903580,GQ199

803,EU081259,EU08

1273,HQ332178,FJ18

2033,GU131725,GU1

31808,KJ189349,FJ5

47063,AB189121,EU

482483,FJQ24463,GU

131692,GQ199852,F

J639675,GU131819,J

F937608,EU081279,

GQ199819,FJ882548

,EU482518,FJ410261

,GU131981,FJ687426

,EU677165,FJQ24432

,GQ868499,KJ18931

6,GU131777,KJ1893

56,FJ639796,FJ4102

78,FJ182025,KJ1893

52,EU081233,GQ868

611,EU482538,GU13

1962,KF955427,JN81

9405,AF309641,HQ8

91313,FJ898381,EU4

82712,GU131960,AB

608786,GU131723,E

U081277,EU482800,

FJ850104,EU081252,

FJQ24430,EU726782,

KJ189331,FJ898417,

EU596504,GU131678

,GU131838,EU48250

0,HQ332183,GU1319

67,JF937604,FJ4613

18,FJ182030,FJ1820

18,FJ432729,FJ4102

50,GU131739,AY726

550,KF921942,JN819

410,KF921933,EU48

2530,GQ199796,GU1

31712,AY726554,FJO

24440,FJ461319,EU2

49491,EU482509,GQ

868536,FJQ24426,GU

131795,GU131781,E

U660393,KJ189343,

GU131735,EU482713

,EU482482,FJ410226

,EU081239,GQ86851

1,FJQ24453,HM1819

63,FJ882560,JF9376

44,FJ547086,FJ8825

44,GQ199834,GQ199

779,EU482514,GQ86

8508,EF122232,FJ89

8391,EU482505,JN81

9425,FJ639670,FJ20

5884,GU131804,FJ89

8404,FJ410190,FJ41

0196,GU131732,AY1

45123,FJ687431,EU0

81278,FJ810415,EU4

82503,FJ873814,FJ8

98410,FJ882525,EU0

81235,GQ199809,FJ

639680,FJ410257,KF

955444,JF937635,EU

482717,FJQ24481,FJ

882539,JF937617,FJ

410243,AF180818,JQ

045661,GQ199873,J

0045640,FJ882530,F

J182002,FJ882562,J

N819412,GU131828,

JN819402,GU131738

,HM181958,EU67715

1,GU131888,JQ0456

54,EU482526,EU482

535,KJ189317,FJQ24

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EU482808

Dengue virus 2
NC_002640
vertebrates,invertebrates,
1024
Flaviviridae,Flavivirus,Dengue virus
—
FJ850074,JF730051,

,NC_00147
human

EU596490,EU482725

5,NC_0014

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74,NC_001

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477

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148,EU687246,EU59

6500,EU482444,EU5

29701,GQ868552,EU

660398,GQ398270,F

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EU569695,EU569699

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74,FM210237,EU482

772,GQ398296,JN81

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31900,EU482761,EF

105381,EU920836,E

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70,JF730054,EU6871

99,GQ398267,EU482

594,HQ332188,EU92

0850,HM582115,EU4

82745,FM210202,FJ6

39822,FJ850050,FJ4

78455,JX286524,EU4

82627,FJ390387,EF1

05378,FJ687440,AF0

22436,EF105390,HM

582112,EU569705,JX

286520,EU482719,JX

286516,EU482448,E

F105379,FM210217,

FJ850066,JF730044,

EU482630,HQ541793

,EU482645,EU05681

1,EU482469,EU4827

33,EU482636,FJ4102

91,GQ199901,JX286

522,GU131932,FJ898

451,JF730047,EU482

557,KJ189310,AY702

039,EU482639,FM21

0212,EU482683,GQ1

99874,FM210209,FJ6

39832,HM582102,KC

294204,KF041233,H

M582105,EU687248,

FJ461311,FJ744745,

FM210228,AF022441

,KF955395,EU56971

9,FM210246,JF73004

8,EU482588,EU6604

05,HQ891023,GQ398

292,AF100468,GQ39

8274,FM210242,KC2

94208,GQ398294,EU

482652,EU482690,H

M582099,JX966379,

EU081180,JN819422,

EU482600,JN819424,

HQ332187,HQ89102

4,EU482562,EU6872

32,FJ906966,EU6604

15,EU687213,HM181

971,EU482546,KF95

5402,GQ398264,EU6

87244,AY702036,EU

482753,EU482621,FJ

547090,AY702038,F

M210206,EU529694,

FM210229,JQ955624

,FJ898478,EU482640

,FJ882594,EU482661

,FJ744741,GQ86862

3,EU482608,GQ3983

07,FJ859028,JXQ796

94,AF169687,GU131

897,EU569692,AJ487

271,EU920828,EU48

2593,GQ868589,FJ7

44707,FM210203,FJ6

39783,EU482655,EU

482728,FJ639835,DQ

181804,M29095,EU6

87223,EU920837,FM

210234,FJ898466,EU

482750,GQ398303,F

M210243,EU569709,

EU854293,EU482653

,EU482746,FJ410259

,EU081177,EU48265

1,FJ850062,GQ8685

44,HQ332189,EU677

146,EU482736,EU68

7230,GQ868597,EU4

82575,EU482738,EU

482740,FM210236,E

U482604,AF489932,F

J898449,HQ541786,

EU482731,EU569704

,FJ687442,EF105380

,FJ639733,EU781135

,FJ850078,FJ410202,

JF730052,FJ410195,

EU529700,AF022438

,AF100469,EU48270

3,GQ398269,FJ7447

17,EU482598,JN3684

76,HM582100,FM210

230,FM210241,AF11

9661,HM631866,EU4

82680,GU131843,EU

482589,FM210204,E

U687220,GQ199869,

EU596484,AF100462

,GU131955,EU48266

3,EU482607,FJ87380

8,EU482686,GQ3982

87,GQ868541,FJ906

961,EU569714,EU48

2549,EU482447,EU4

82574,EU920848,EU

920842,FJ410223,EU

482648,FM210235,E

U529695,EU081178,

KC294220,FM210214

,EU482756,FJ410237

,EU482692,FJ744742

,JF357907,EU569717

,FJ850107,FJ461309,

EU482786,EU482732

,EU482693,FJ744744

,DQ181803,AF27661

9,EU569710,EU5964

91,FJ850115,EU4826

35,EU569712,HQ332

186,FJ639830,HM58

2117,EU482597,EU6

60400,FJ873811,HM

582110,FJ467493,JF

730055,GQ868497,F

J810412,EU482565,

GQ398286,FM21020

5,GQ398277,EU4825

45,GQ398313,GQ398

306,M20558,EU4827

78,EU482727,EU482

681,EU687229,AF16

9684,FJ810411,AF02

2434,EU569693,EU4

82561,JN819419,FJ8

82593,KC964095,FJ8

98452,FJ744711,EF1

05388,EU482771,FM

210222,AF022440

Dengue virus 3
NC_002640
vertebrates,invertebrates,
785
Flaviviridae,Flavivirus,Dengue virus
—
HQ705619,KF955479

,NC_00147
human

,GQ199887,EU48255

5,NC_0014

8,EU081202,FJ88257

74,NC_001

8,FJ639714,KJ18929

477

3,EU081219,FJ46133

8,KF955457,EU6872

39,GU131954,FJ6397

24,EU660407,EU529

704,AB214882,FJ639

779,KF041258,FJ850

080,AB189125,FJ639

760,EU687221,GQ86

8617,EU482460,HM6

31859,JF937624,FJ1

82040,KF955463,GQ

868572,GU131867,FJ

850086,HM181977,A

Y676351,EU660408,

EU081221,AY858043

,HQ541791,EU48245

7,JF937643,FJ18200

5,JF937631,JF93763

3,FJ639789,M93130,

FJ547074,JQ045691,

GU131933,FJ432743,

FJ547069,FJ373302,

GQ868629,KJ189299

,JQ045693,FJ639762

,JF808126,GU131873

,EU482596,JF920408

,FJ432731,FJ744726,

KF955333,FJ639758,

FJ639803,GU131859,

HQ705611,FJ432741,

FJ205871,JF937636,

FJ639798,KJ189265,

JQ920482,FJ639793,

EU529692,FJ639713,

EU529705,AY662691

,GU131937,FJ850049

,JF937625,KF955473

,AY676348,EF629370

,EU529688,AY67914

7,JF937648,AY49687

1,EU081214,AY8580

47,HG316483,JQ920

484,FJ882571,GQ86

8627,KJ189296,FJ54

7081,FJ182041,FJ63

9801,FJ547083,GQ8

68574,EU081190,KF

955461,EF629368,FJ

547062,GU131907,H

M631864,EU482563,

FJ639769,JN000936,

FJ410229,FJ182015,

FJ639761,KJ189283,

HQ705621,KJ189273

,KJ189269,GU13195

3,FJ639795,FJ63972

3,FJ182038,KJ18925

8,HQ671178,JQ0456

92, FJ898459,GU1319

11,HM756277,GU131

870,GU131905,FJ882

572,KJ189262,FJ850

098,GQ199862,JF93

7630,JF920399,JF80

8121,HM756282,JF8

08118,JF808119,HQ5

41789,FJ639720,EU0

81220,JQ920485,KF9

55458,KJ189280,EU4

82453,GU131857,EU

081181,DQ675519,E

U660411,JQ920488,F

J547076,AY770511,J

Q920487,JF937634,J

F937637,GU131872,

EU081189,EU726774

,FJ873813,HM18193

5,FJ547066,GU13194

4,FJ639731,FJ54707

7,EU482461,FJ85007

9,HM631854,GQ8685

78,JF937646,FJQ244

65,EU081215,AY858

041,FJ913015,HQ705

615,AY496873,GU13

1853,KF824902,GU1

31862,JQ920476,FJ5

62107,KJ189263,FJ7

44740,EU687219,KJ1

89292,AY744682,KJ1

89277,JN093517,EU4

82454,FJ562102,EU0

81223,EU081203,FJ6

39774,GU131869,EU

529703, HQ705623,FJ

744727,JF937626,AB

214881,AY858044,EF

629369,EF629373,FJ

390375,FJ898470,KJ

189268,JN093515,FJ

898445,JQ920478,H

M631861,HM756281,

EU529690,GU131904

,KJ189298,FJ639750,

FJ54 7061,KJ189256,

FJ882577,DQ675528,

FJ562097,KJ189278,

FJ898446,GU131951,

KJ189271,GU131848

,FJ898462,EU081195

, DQ675520, HQ70562

2,EU529698,KJ18926

6,FJ639784,FJ63979

2,GQ868593,AY7446

83,FJ898444,GU1318

76,FJ639778,FJ432722,

FJ639755,EU081186,

HQ705617,GU131847,

FJ639770,EU529 699,

EU726769,FJ850097,

JQ920480,EU596494,

EU081192,KF9

55466,FJ898472,AB2

14880,HQ166032,KF

921916,JF808122,DQ

863638,FJ744734,GU

131915,JF937647,JF

295012,GQ199886,F

J850094,JF808120,E

U482613,EU529686,J

F920404,FJ639768,H

0166033,HQ332170,

JF920396,FJ744729,

DQ675525,EU081196

,KJ189274,EU529683

,EU482559,HM18193

3,HM181934,FJ5470

78,EU081194,FJ6397

76,GQ868548,FJ461

334,KJ189291,HQ70

5610,GQ252678,GU1

31913,GU131871,JF8

08124,FJ639805,GQ

868577,GU131934,E

U081206,HQ705613,

JQ045694,AB189127,

FJ639756,FJ744735,

EU482566,GU131941

,EU081208,EU72677

2,JF937638,FJ88257

4,EU854298,DQ4016

90,EU687218,HM181

975,FJ461326,FJ898

457,HM631857,JF93

7620,FJ644564,FJ74

4737,GU131939,KF9

55471,AY744677,HM

631869,FJ562099,KJ

189288,FJ898475,G

0466079,JF937623,J

0920486,EU081205,

GU131855,GU13185

6,FJQ24466,GQ8685

47,AY744684,FJ4613

37,HM631862,AY676

352,GU131952,HM18

1972,FJ182006,GU13

1877,GU131846,HM6

31860,JF920402,KJ1

89270,FJ205870,KJ1

89285,GU131938,JF9

37632,FJ182013,FJ8

82575,AY923865,HM

631858,JQ045690,E

U482614,JF920405,F

J639751,FJ898469,F

J744731,KJ189260,A

Y496874,FJ432728,D

Q675531,EU482452,

EF643017,EU482595

,EU596493,EU66040

9,EU726773,FJ85009

6,FJ898464,EU56969

1,FJ810416,FJ89846

3,GU131861,KF9554

76,FJ547085,EU0812

25,JF920409,GU1318

66,EU854291,EU932

688,JF808127,JQ045

689,AY858042,EU08

1212,GQ199891,JF9

37639,FJ898476,DQ4

01692,AY744679,DQ

675527,JF808128,JF

920393,FJ639763,FJ

461322,FJ547079,G

0868626,KJ189289,J

F920407,HQ541796,

FJ182037,KJ189259,

EU687198,GQ86854

6,GQ199861,EU5297

02,FJ898458,JF5046

79,HQ705609,AY676

350,HM631863,FJ74

4732,AY099337,FJ63

9817,JF937621,KJ18

9261,EU482612,EU4

82564,GU131874,EU

482459,KJ189300,AY

496879,JF937640,JF

920401,FJ850056,KJ

189290,EU081201,FJ

898441,FJ390377,H

M756276,EUO81204,

GU131903,GQ19988

9,EU569690,GQ1998

63,JN662391,FJ8500

89,DQ401693,JF9203

98,FJ639826,GQ199

870,FJ898468,EU081

198,FJ639721,KJ189

282,KF955332,DQ67

5523,EU781136,FJ54

7072,FJ373306,GQ8

68587,EU482455,FJ5

62103,AY744685,FJ6

39827,FJ898456,EU6

60410,FJ390376,GU1

31860,GU131852,GU

131850,FJ898474,EU

932687,GU131878,H

M181978,EU081182,

GU131942,FJ182007,

EU081210,KF041257

,EU081224,KJ189276

,FJ639730,HQ166031

,KF955487,EU08118

4,GU131844,EU4824

58,JN093513,JQ0456

88,JF920406,EU5296

96,FJ873812,AY8580

38,KF955472,GQ199

864,KJ189272,HQ54

1806,EU596492,DQ6

75529,FJ850109,KF9

55465,AY858040,FJ5

47075,FJ744700,EU5

69689,JF937641,FJ5

47082,EU687197,HQ

671177,FJ639804,AY

858045,HQ541797,K

F824903,HQ705618,

FJ639753,FJ390372,

JF937629,GU131908,

FJ639716,GU131865,

JQ411814,FJ639790,

KF041254,EU529684

,KJ189301,HM18197

6,FJ639725,FJ89845

5,FJ639754,FJ63981

6,FJ639759,GQ8686

28,HQ332171,JQ920

483,FJ182008,AY858

039,EU081197,AY67

6353,DQ675524,FJ63

9799,AY744681,EU6

87233,KF955451,JF8

08129,HQ891025,FJ6

39727,EU081191,JF9

37652,HQ705612,FJ8

50111,FJ639787,HM

756279,JQ920489,H

0166030,FJ898440,

GU131943,JF920395,

FJ182011,FJ639782,

AY858046,FJ850048,

FJ639786,GU131916,

HQ705614,EU687196

,EU529697,JF920400

,FJ639757,EU081207

,FJ744736,KC425219

,FJ373303,EU529685

,KJ189297,EU081209

,FJ639752,KF955453

,FJ639749,EU726771

,HQ166034,KF95550

7,DQ675521,FJQ2447

0,EU081185,KJ18925

7,JQ920481,FJQ2446

8,GU131854,EU3679

62,AY766104,FJ6397

19,FJ639722,EU5296

87,DQ675526,JF8081

25,FJQ24467,HQ5417

85,GU131918,GU131

945,GU131912,GU13

1946,HQ705620,HM7

56274,HM756278,FJ

850083,GQ868571,J

N183884,EF629367,

DQ401695,KF955454

,FJ744738,EU660420

,DQ401691,GU13191

4,AY744678,HQ6711

76,FJ461329,FJ6397

15,AY776329,FJ7447

30,FJ687448,KF9554

77,GU131851,FJ3733

04,KF955456,KJ1892

95,FJ639766,JF9204

03,FJ639781,DQ6755

30,JN368477,FJ8500

55,AY858048,HM181

973,FJ562100,FJ850

052,KF041255,JF808

123,GQ252674,EU68

7234,FJ639726,FJ63

9772,FJ410176,EU48

2555,GU131868,JF92

0394,JF937622,FJ47

8456,FJ639780,EU48

2462,FJ182010,KJ18

9284,KF955505,EUS

69688,AY648961,KF9

55468,GU131849,EU

081188,EU687226,G

U131950,JF937628,J

NO00938,KF955459,F

J547080,FJ898442,F

J182039,GU189648,F

J547084,EU854292,K

J189267,EU081216,

GQ868616,EU08121

3,FJ639785,EF62936

6,FJ810413,JN40651

5,KJ189286,GU1319

40,EU529691,FJ1820

09,FJ639746,KJ1892

64,AY744680,FJ5470

71,FJQ24469,CS8053

42,FJ898473,GU1318

58,FJ744733,KF0412

59,FJ639765,FJ7447

39,JQ045687,EU529

689,FJ898471,FJ639

728,EU081211,EU78

1137,FJ639800,GQ1

99860,JN093514,AY6

76349,KF955460,EU

081218,FJ390373,KJ

189294,HM756280,K

F041256,GQ868586,

GU131906,KJ189279

,GQ199888,JQ92047

9,EU081222,GU3635

49,AY496877,FJ6397

67,JN000937,DQ675

532,FJ410178,EU081

187,DQ675522,HQ54

1790,EU081199,GQ1

99871,GQ868634,FJ

882576,FJ547073,AF

317645,GU131910,FJ

898443,AY858037,JQ

920477,FJ639807,FJ

639771,FJ850110,AY

876494,KF955464,G

U131909,HQ705616,

FJ810414,HM756275

,EU081193,AB21487

9,GU131935,AB1891

28,JF937627,FJ6397

91,JF920397,FJ6398

25,KF955462,FJ6397

75,GQ868573,FJ639

747,GQ199865,HM63

1856,FJ182004,FJO2

4471,EU081183,FJ54

7070,EU482456,EU7

26768,DQ401694,GU

131845,GU131875,FJ

744728,JF937642,JQ

045695,KJ189287,G

U131936,JN406514,K

F955474,HQ235027,

KF955449,EU081217

,KJ189275,KJ189281,

FJ898447,FJ639810,

FJ639712,EU081200,

FJ850092,DQ401689,

GQ868575,FJ639777

,FJ882573,KF955486

,FJ639729,FJ390371,

HM181974,JN697379

,FJ410177,DQ675533

,AB189126,GU13191

7,GQ868576,HG3164

84,HQ541795

Dengue virus 4
NC_002640
vertebrates,invertebrates,
134
Flaviviridae,Flavivirus,Dengue virus

FJ882587,FJQ24476,

,NC_00147
human

FJ882589,AY618992,

5,NC_0014

EU854295,KF041260

74,NC_001

,JQ513333,FJ639745

477

,GQ199880,JQ51334

5,JN819409,AY61899

1,JQ513339,JN55974

0,JQ915087,FJ81041

7,JQ513332,JQ51333

7,FJ882581,JQ51334

0,JN819406,JQ51334

2,JF262780,FJ63973

6,FJ882583,GQ1998

79,GQ398256,GQ868

585,JQ513344,FJ882

595,JQ915089,FJ882

592,JQ513341,HQ33

2176,JQ915082,FJ63

9738,JQ513331,JQ51

3343,AF375822,EF45

7906,JXQ24758,FJ88

2585,FJQ24424,GQ8

68594,GQ868581,AY

947539,EU854297,G

0199885,FJ882591,

GQ868579,FJ882598

,EU854301,GQ86858

0,AY618990,FJ22606

7,HQ332172,JQ9150

84,AF326825,FJ8500

59,GQ199882,KC333

651,JQ513338,FJ639

744,GQ199884,AY85

8050,FJ882584,FJ63

9773,JQ513330,JF74

1967,FJ882588,FJ63

9737,JF262782,GQ8

68584,FJ882590,FJ8

50095,HQ332173,FJ8

82596,GQ868643,FJ

882600,GQ199883,G

0868583,FJ882580,F

J639748,FJ882599,J

0915081,AY618993,

GQ868644,AF289029

,GQ252675,JQ91508

5,GQ199876,M14931

,GQ868642,GQ86858

2,JN559741,JQ91508

6,FJ882582,JXQ2475

7,AF326827,EU8542

96,FJ639764,FJ1820

16,JF262779,GU2899

13,GQ199881,AF326

826,AY618988,FJ882

601,JQ513336,FJ850

058,GQ868645,EU85

4300,GQ199878,JF2

62783,JQ915088,HQ

332175,FJ639742,FJ

639739,JQ915090,AF

326573,JQ915083,FJ

850057,FJ182017,JQ

513334,FJ882586,AY

618989,FJ882597,JQ

513335,EU854299,JN

983813,JF262781,HQ

332174,AY776330,A

Y762085

Donggang virus
NC_016997
vertebrates,invertebrates,
1
Flaviviridae,Flavivirus,Donggang virus
—
JQ086551

human

Douglas virus
NC_018461
vertebrates,invertebrates,
1
Bunyaviridae,Orthobunyavirus,Sathuperi virus
seg. L
HE795090

human

Douglas virus
NC_018462
vertebrates,invertebrates,
1
Bunyaviridae,Orthobunyavirus,Sathuperi virus
seg. S
HE795092

human

Douglas virus
NC_018466
vertebrates,invertebrates,
1
Bunyaviridae,Orthobunyavirus,Sathuperi virus
seg. M
HE795091

human

Duck Tembusu virus
NC_015843
vertebrates,invertebrates,
6
Flaviviridae,Flavivirus,Tembusu virus
—
KC990541,KC990544

human

,KC990545,KC99054

3,KC990542,KC9905

40

Duck egg-drop syndrome
NC_015843
vertebrates,invertebrates,
7
Flaviviridae,Flavivirus,Tembusu virus
—
JQ920426,JQ920421,

virus

human

JQ920423,JQ920425,

JQ920424,JQ920420,

JQ920422

Duck flavivirus TA
NC_015843
vertebrates,invertebrates,
1
Flaviviridae,Flavivirus,Tembusu virus
—
JQ289550

human

Dugbe virus
NC_004157
vertebrates,invertebrates,
6
Bunyaviridae,Nairovirus,Dugbe virus
seg. S
M25150,AF434161,A

human

F434164,AF434163,A

F434165,AF434162

Dugbe virus
NC_004158
vertebrates,invertebrates,
1
Bunyaviridae,Nairovirus,Dugbe virus
seg. M
M94133

human

Dugbe virus
NC_004159
vertebrates,invertebrates,
1
Bunyaviridae,Nairovirus,Dugbe virus
seg. L
U15018

human

Durania virus
NC_015450
vertebrates,invertebrates,
1
Bunyaviridae,Phlebovirus,Aguacate virus
seg. M
HM566157

human

Durania virus
NC_015451
vertebrates,invertebrates,
1
Bunyaviridae,Phlebovirus,Aguacate virus
seg. L
HM566155

human

Durania virus
NC_015452
vertebrates,invertebrates,
1
Bunyaviridae,Phlebovirus,Aguacate virus
seg. S
HM566156

human

Echarate virus
NC_015373
vertebrates,invertebrates,
1
Bunyaviridae,Phlebovirus,Candiru virus
seg. M
HM119411

human

Echarate virus
NC_015374
vertebrates,invertebrates,
1
Bunyaviridae,Phlebovirus,Candiru virus
seg. L
HM119410

human

Echarate virus
NC_015375
vertebrates,invertebrates,
1
Bunyaviridae,Phlebovirus,Candiru virus
seg. S
HM119412

human

Entebbe bat virus
NC_008718
vertebrates,invertebrates,
2
Flaviviridae,Flavivirus,Entebbe bat virus
seg. S
DQ837641,AY632537

human

Eyach virus
NC_003696
vertebrates,invertebrates,
1
Reoviridae,Coltivirus,Eyach virus
seg. 1
AF282467

human

Eyach virus
NC_003697
vertebrates,invertebrates,
1
Reoviridae,Coltivirus,Eyach virus
seg. 2
AF282468

human

Eyach virus
NC_003698
vertebrates,invertebrates,
1
Reoviridae,Coltivirus,Eyach virus
seg. 3
AF282469

human

Eyach virus
NC_003699
vertebrates,invertebrates,
1
Reoviridae,Coltivirus,Eyach virus
seg. 4
AF282470

human

Eyach virus
NC_003700
vertebrates,invertebrates,
1
Reoviridae,Coltivirus,Eyach virus
seg. 5
AF282471

human

Eyach virus
NC_003701
vertebrates,invertebrates,
1
Reoviridae,Coltivirus,Eyach virus
seg. 6
AF282472

human

Eyach virus
NC_003702
vertebrates,invertebrates,
1
Reoviridae,Coltivirus,Eyach virus
seg. 7
AF282473

human

Eyach virus
NC_003703
vertebrates,invertebrates,
1
Reoviridae,Coltivirus,Eyach virus
seg. 8
AF282474

human

Eyach virus
NC_003704
vertebrates,invertebrates,
1
Reoviridae,Coltivirus,Eyach virus
seg. 9
AF282475

human

Eyach virus
NC_003705
vertebrates,invertebrates,
1
Reoviridae,Coltivirus,Eyach virus
seg.
AF282476

human

10

Eyach virus
NC_003706
vertebrates,invertebrates,
1
Reoviridae,Coltivirus,Eyach virus
seg.
AF282477

human

11

Eyach virus
NC_003707
vertebrates,invertebrates,
1
Reoviridae,Coltivirus,Eyach virus
seg.
AF282478

human

12

Flavivirus White Kaiya
NC_015843
vertebrates,invertebrates,
1
Flaviviridae,Flavivirus,Tembusu virus
—
JX196334

duck/WR/China/2010

human

Flavivirus
NC_015843
vertebrates,invertebrates,
1
Flaviviridae,Flavivirus,Tembusu virus
—
JN232077

muscovy/SD/China/2011

human

Fort Sherman virus
NC_001927
vertebrates,invertebrates,
1
Bunyaviridae,Orthobunyavirus,Bunyamwera
seg. S
EU564829

human

virus

Germiston virus
NC_001926
vertebrates,invertebrates,
1
Bunyaviridae,Orthobunyavirus,Bunyamwera
seg. M
M21951

human

virus

Grand Arbaud virus
NC_005214
vertebrates,invertebrates,
1
Bunyaviridae,Phlebovirus,Uukuniemi virus
seg. L
JF838327

human

Grand Arbaud virus
NC_005220
vertebrates,invertebrates,
1
Bunyaviridae,Phlebovirus,Uukuniemi virus
seg. M
JF838328

human

Great Island virus
NC_014522
vertebrates,invertebrates,
1
Reoviridae,Orbivirus,Great Island virus
seg. 1
HM543465

human

Great Island virus
NC_014523
vertebrates,invertebrates,
1
Reoviridae,Orbivirus,Great Island virus
seg. 2
HM543466

human

Great Island virus
NC_014524
vertebrates,invertebrates,
1
Reoviridae,Orbivirus,Great Island virus
seg. 3
HM543467

human

Great Island virus
NC_014525
vertebrates,invertebrates,
1
Reoviridae,Orbivirus,Great Island virus
seg. 4
HM543468

human

Great Island virus
NC_014526
vertebrates,invertebrates,
1
Reoviridae,Orbivirus,Great Island virus
seg. 5
HM543469

human

Great Island virus
NC_014527
vertebrates,invertebrates,
\1
Reoviridae,Orbivirus,Great Island virus
seg. 6
HM543470

human

Great Island virus
NC_014528
vertebrates,invertebrates,
1
Reoviridae,Orbivirus,Great Island virus
seg. 7
HM543471

human

Great Island virus
NC_014529
vertebrates,invertebrates,
1
Reoviridae,Orbivirus,Great Island virus
seg. 8
HM543472

human

Great Island virus
NC_014530
vertebrates,invertebrates,
1
Reoviridae,Orbivirus,Great Island virus
seg. 9
HM543473

human

Great Island virus
NC_014531
vertebrates,invertebrates,
1
Reoviridae,Orbivirus,Great Island virus
seg.
HM543474

human

10

Hazara virus
NC_005300
vertebrates,invertebrates,
1
Bunyaviridae,Nairovirus,Crimean-Congo
seg. M
DQ813514

human

hemorrhagic fever virus

Hazara virus
NC_005301
vertebrates,invertebrates,
1
Bunyaviridae,Nairovirus,Crimean-Congo
seg. L
DQ076419

human

hemorrhagic fever virus

Hazara virus
NC_005302
vertebrates,invertebrates,
1
Bunyaviridae,Nairovirus,Crimean-Congo
seg. S
M86624

human

hemorrhagic fever virus

Huaiyangshan virus
NC_018136
vertebrates,invertebrates,
1
Bunyaviridae,Phlebovirus,Severe fever with
seg. L
JF906056

human

thrombocytopenia syndrome virus

Huaiyangshan virus
NC_018137
vertebrates,invertebrates,
1
Bunyaviridae,Phlebovirus,Severe fever with
seg. S
JF906058

human

thrombocytopenia syndrome virus

Huaiyangshan virus
NC_018138
vertebrates,invertebrates,
3
Bunyaviridae,Phlebovirus,Severe fever with
seg. M
JF951394,JF906057,

human

thrombocytopenia syndrome virus

JF951393

Igbo Ora virus
NC_001512
vertebrates,invertebrates,
1
Togaviridae,Alphavirus,O'nyong-nyong virus
—
AF079457

human

Iguape virus
NC_009026
vertebrates,invertebrates,
1
Flaviviridae,Flavivirus,Aroa virus
—
AY632538

human

Ilesha virus
NC_001926
vertebrates,invertebrates,
1
Bunyaviridae,Orthobunyavirus,Bunyamwera
seg. M
AY859372

human

virus

Ilesha virus
NC_001927
vertebrates,invertebrates,
3
Bunyaviridae,Orthobunyavirus,Bunyamwera
seg. S
AM709780,AM70977

human

virus

9,AY729651

Ilheus virus
NC_009028
vertebrates,invertebrates,
2
Flaviviridae,Flavivirus,Ilheus virus

KC481679,AY632539

human

Inkoo virus
NC_004108
vertebrates,invertebrates,
1
Bunyaviridae,Orthobunyavirus,California
seg. L
EU789573

human

encephalitis virus

Inkoo virus
NC_004109
vertebrates,invertebrates,
2
Bunyaviridae,Orthobunyavirus,California
seg. M
U88059,U88060

human

encephalitis virus

Inkoo virus
NC_004110
vertebrates,invertebrates,
2
Bunyaviridae,Orthobunyavirus,California
seg. S
U47137,U47138

human

encephalitis virus

Israel turkey
NC_012534
vertebrates,invertebrates,
5
Flaviviridae,Flavivirus,Bagaza virus
seg. M
KC734553,KC734550

meningoencephalomyelitis

human

,KC734552,KC73454

virus

9,KC734551

Itaituba virus
NC_015373
vertebrates,invertebrates,
1
Bunyaviridae,Phlebovirus,Candiru virus
seg. M
HM119417

human

Itaituba virus
NC_015374
vertebrates,invertebrates,
1
Bunyaviridae,Phlebovirus,Candiru virus
seg. L
HM119416

human

Itaituba virus
NC_015375
vertebrates,invertebrates,
1
Bunyaviridae,Phlebovirus,Candiru virus
seg. S
HM119418

human

Ixcanal virus
NC_015450
vertebrates,invertebrates,
1
Bunyaviridae,Phlebovirus,Aguacate virus
seg. M
HM566163

human

Ixcanal virus
NC_015451
vertebrates,invertebrates,
1
Bunyaviridae,Phlebovirus,Aguacate virus
seg. L
HM566162

human

Ixcanal virus
NC_015452
vertebrates,invertebrates,
1
Bunyaviridae,Phlebovirus,Aguacate virus
seg. S
HM566161

human

Jacunda virus
NC_015373
vertebrates,invertebrates,
1
Bunyaviridae,Phlebovirus,Candiru virus
seg. M
HM466935

human

Jacunda virus
NC_015374
vertebrates,invertebrates,
1
Bunyaviridae,Phlebovirus,Candiru virus
seg. L
HM466934

human

Jacunda virus
NC_015375
vertebrates,invertebrates,
1
Bunyaviridae,Phlebovirus,Candiru virus
seg. S
HM466936

human

Jamestown Canyon virus
NC_004109
vertebrates,invertebrates,
1
Bunyaviridae,Orthobunyavirus,California
seg. M
U88058

human

encephalitis virus

Jamestown Canyon virus
NC_004110
vertebrates,invertebrates,
1
Bunyaviridae,Orthobunyavirus,California
seg. S
U12796

human

encephalitis virus

Japanese encephalitis virus
NC_001437
vertebrates,invertebrates,
171
Flaviviridae,Flavivirus,Japanese encephalitis
—
JN381857,JF706274,

human

virus

AB551990,AF254452,

JN381837,M18370,K

F297915,JQ086763,J

N381858,KC915016,J

N381855,JN381861,J

XQ72965,JF706281,J

N381862,D90195,JF7

06278,FJ185037,JXQ

50179,U14163,AY849

939,JN381869,JN381

832,AB698906,AB69

8907,JF706269,AB05

1292,JN381849,JN38

1870,EF571853,JN38

1859,JF499790,JF70

6282,JN381831,M555

06,JN381851,JF7062

80,JN711458,AY5852

42,JN381844,GQ902

061,JN381863,AY303

798,JF706272,HQ652

538,AF075723,JF706

270,JF706283,AY508

813,JN381840,JN381

830,JN381850,AF221

500,AY303792,AB24

1118,AF254453,AB55

1991,AY508812,JN64

4310,AB241119,AF48

6638,AB830335,JN38

1864,JN381847,KF29

7916,HM228921,JF7

06284,AF315119,JF7

06277,JN381860,AF4

16457,AF069076,GU

205163,GQ918133,A

F221499,JF706267,J

N381833,JN381843,J

N381871,JF706286,A

B698905,JN381854,J

N381873,JN381848,J

F706275,FJ495189,A

Y316157,EF623987,J

F706268,HM366552,

AF014161,GU556217

,JN381834,JN381842

,AY303794,JN381853

,JF499788,JX131374,

AF014160,HM596272

,AY585243,JN711459

,AF098735,AF045551

,AF098737,GQ90205

9,AB196926,JN60498

6,AY303796,AF21762

0,AY303797,EF62398

8,JN381841,GQ9020

60,JN381856,JN3818

52,JF706273,JQ0867

62,JF706276,D90194

,EU429297,AY30379

1,AB196925,KC5174

97,JN381866,JN8640

64,JF706279,AB5948

29,L48961,FJ185036,

AB698908,JN381846,

AB853904,AF080251,

JF499789,JN381845,

JN381867,AB196924,

JN381872,HE861351,

GQ902062,EF623989

,EU880214,HQ89354

5,GQ199609,AY3037

93,JN381836,KC1961

15,JN381835,U15763

,AB196923,EF543861

,AB698909,EU69389

9,JF706271,JF70628

5,JN381838,L78128,J

N381839,GU187972,

AY303795,U47032,G

0902058,EF107523,J

F915894,AB551992,

GQ902063,JN381868

,AY184212,JN381865

,AF098736

Jerry Slough virus
NC_004109
vertebrates,invertebrates,
1
Bunyaviridae,Orthobunyavirus,California
seg. M
AF123487

human

encephalitis virus

Kadipiro virus
NC_004199
vertebrates,invertebrates,
2
Reoviridae,Seadornavirus,Kadipiro virus
seg.
AF019909,FJ159105

human

12

Kadipiro virus
NC_004205
vertebrates,invertebrates,
1
Reoviridae,Seadornavirus,Kadipiro virus
seg.
AF052019

human

11

Kadipiro virus
NC_004206
vertebrates,invertebrates,
1
Reoviridae,Seadornavirus,Kadipiro virus
seg.
AF052020

human

10

Kadipiro virus
NC_004207
vertebrates,invertebrates,
1
Reoviridae,Seadornavirus,Kadipiro virus
seg. 9
AF052021

human

Kadipiro virus
NC_004208
vertebrates,invertebrates,
1
Reoviridae,Seadornavirus,Kadipiro virus
seg. 8
AF052022

human

Kadipiro virus
NC_004209
vertebrates,invertebrates,
1
Reoviridae,Seadornavirus,Kadipiro virus
seg. 7
AF052023

human

Kadipiro virus
NC_004210
vertebrates,invertebrates,
1
Reoviridae,Seadornavirus,Kadipiro virus
seg. 1
AF133429

human

Kadipiro virus
NC_004212
vertebrates,invertebrates,
1
Reoviridae,Seadornavirus,Kadipiro virus
seg. 2
AF134509

human

Kadipiro virus
NC_004213
vertebrates,invertebrates,
1
Reoviridae,Seadornavirus,Kadipiro virus
seg. 3
AF134510

human

Kadipiro virus
NC_004214
vertebrates,invertebrates,
1
Reoviridae,Seadornavirus,Kadipiro virus
seg. 4
AF134511

human

Kadipiro virus
NC_004215
vertebrates,invertebrates,
1
Reoviridae,Seadornavirus,Kadipiro virus
seg. 5
AF134512

human

Kadipiro virus
NC_004216
vertebrates,invertebrates,
1
Reoviridae,Seadornavirus,Kadipiro virus
seg. 6
AF134513

human

Kama virus
NC_023439
vertebrates,invertebrates,
1
Flaviviridae,Flavivirus,Kama virus
—
KF815940

human

Kamiti River virus
NC_005064
vertebrates,invertebrates,
2
Flaviviridae,Flavivirus,Kamiti River virus
—
AY149905,AY149904

human

Karshi virus
NC_006947
vertebrates,invertebrates,
3
Flaviviridae,Flavivirus,Royal Farm virus
—
DQ235147,AY863002

human

,DQ462443

Kedougou virus
NC_012533
vertebrates,invertebrates,
1
Flaviviridae,Flavivirus,Kedougou virus
—
AY632540

human

Kemerovo virus
NC_014522
vertebrates,invertebrates,
2
Reoviridae,Orbivirus,Great Island virus
seg. 1
HQ266591,HM54348

human

1

Kemerovo virus
NC_014523
vertebrates,invertebrates,
2
Reoviridae,Orbivirus,Great Island virus
seg. 2
HQ266592,HM54348

human
2

Kemerovo virus
NC_014524
vertebrates,invertebrates,
1
Reoviridae,Orbivirus,Great Island virus
seg. 3
HQ266593

human

Kemerovo virus
NC_014525
vertebrates,invertebrates,
1
Reoviridae,Orbivirus,Great Island virus
seg. 4
HQ266594

human

Kemerovo virus
NC_014526
vertebrates,invertebrates,
2
Reoviridae,Orbivirus,Great Island virus
seg. 5
HQ266596,HQ26659

human
5

Kemerovo virus
NC_014527
vertebrates,invertebrates,
1
Reoviridae,Orbivirus,Great Island virus
seg. 6
HM543483

human

Kemerovo virus
NC_014528
vertebrates,invertebrates,
1
Reoviridae,Orbivirus,Great Island virus
seg. 7
HQ266597

human

Kemerovo virus
NC_014529
vertebrates,invertebrates,
1
Reoviridae,Orbivirus,Great Island virus
seg. 8
HQ266598

human

Kemerovo virus
NC_014530
vertebrates,invertebrates,
1
Reoviridae,Orbivirus,Great Island virus
seg. 9
HQ266599

human

Kemerovo virus
NC_014531
vertebrates,invertebrates,
1
Reoviridae,Orbivirus,Great Island virus
seg.
HQ266600

human

10

Keystone virus
NC_004109
vertebrates,invertebrates,
1
Bunyaviridae,Orthobunyavirus,California
seg. M
AF123489

human

encephalitis virus

Keystone virus
NC_004110
vertebrates,invertebrates,
1
Bunyaviridae,Orthobunyavirus,California
seg. S
U12801

human

encephalitis virus

Kokobera virus
NC_009029
vertebrates,invertebrates,
1
Flaviviridae,Flavivirus,Kokobera virus
—
AY632541

human

Kunjin virus
NC_001563
vertebrates,invertebrates,
3
Flaviviridae,Flavivirus,West Nile virus
—
DQ0246,AY274505,A

human

Y274504

Kunjin virus
NC_009942
vertebrates,invertebrates,
3
Flaviviridae,Flavivirus,West Nile virus
—
DQ0246,AY274505,A

human

Y274504

Kyasanur forest disease
NC_004355
vertebrates,invertebrates,
6
Flaviviridae,Flavivirus,Kyasanur forest disease
—
EU480689,JF416960,

virus

human

virus

AY323490,JF416959,

JF416958,HM055369

La Crosse virus
NC_004108
vertebrates,invertebrates,
7
Bunyaviridae,Orthobunyavirus,California
seg. L
AF525489,EF485038,

human

encephalitis virus

EF485035,AF528165,

U12396,EF485032, D

0196118

La Crosse virus
NC_004109
vertebrates,invertebrates,
13
Bunyaviridae,Orthobunyavirus,California
seg. M
EF485031,DQ196119

human

encephalitis virus

,U70207,EF485037,U

70205,U 18980,U 7020

8,EF485034,M87664,

D10370,U70206,U18

979,AF528166

La Crosse virus
NC_004110
vertebrates,invertebrates,
7
Bunyaviridae,Orthobunyavirus,California
seg. S
DQ196120,EF485030

human

encephalitis virus

,EF485036,AF528167

,K00610,EF485033,K

00108

Langat virus
NC_003690
vertebrates,invertebrates,
3
Flaviviridae,Flavivirus,Langat virus
—
EU790644,AF253420

human

,AF253419

Liao ning virus
NC_007736
vertebrates,invertebrates,
1
Reoviridae,Seadornavirus,Liao ning virus
seg. 1
AY701339

human

Liao ning virus
NC_007737
vertebrates,invertebrates,
1
Reoviridae,Seadornavirus,Liao ning virus
seg. 2
AY701340

human

Liao ning virus
NC_007738
vertebrates,invertebrates,
1
Reoviridae,Seadornavirus,Liao ning virus
seg. 3
AY701341

human

Liao ning virus
NC_007739
vertebrates,invertebrates,
1
Reoviridae,Seadornavirus,Liao ning virus
seg. 4
AY701342

human

Liao ning virus
NC_007740
vertebrates,invertebrates,
1
Reoviridae,Seadornavirus,Liao ning virus
seg. 5
AY701343

human

Liao ning virus
NC_007741
vertebrates,invertebrates,
1
Reoviridae,Seadornavirus,Liao ning virus
seg. 6
AY701344

human

Liao ning virus
NC_007742
vertebrates,invertebrates,
1
Reoviridae,Seadornavirus,Liao ning virus
seg. 7
AY701345

human

Liao ning virus
NC_007743
vertebrates,invertebrates,
1
Reoviridae,Seadornavirus,Liao ning virus
seg. 8
AY701346

human

Liao ning virus
NC_007744
vertebrates,invertebrates,
1
Reoviridae,Seadornavirus,Liao ning virus
seg. 9
AY701347

human

Liao ning virus
NC_007745
vertebrates,invertebrates,
1
Reoviridae,Seadornavirus,Liao ning virus
seg.
AY701348

human

10

Liao ning virus
NC_007746
vertebrates,invertebrates,
1
Reoviridae,Seadornavirus,Liao ning virus
seg.
AY701349

human

11

Liao ning virus
NC_007747
vertebrates,invertebrates,
1
Reoviridae,Seadornavirus,Liao ning virus
seg.
AY701350

human

12

Lipovnik virus
NC_014522
vertebrates,invertebrates,
1
Reoviridae,Orbivirus,Great Island virus
seg. 1
HM543475

human

Lipovnik virus
NC_014523
vertebrates,invertebrates,
1
Reoviridae,Orbivirus,Great Island virus
seg. 2
HM543476

human

Louping ill virus
NC_001809
vertebrates,invertebrates,
2
Flaviviridae,Flavivirus,Louping ill virus
—
Y07863,KF056331

human

Lumbo virus
NC_004109
vertebrates,invertebrates,
1
Bunyaviridae,Orthobunyavirus,California
seg. M
AF123484

human

encephalitis virus

Lumbo virus
NC_004110
vertebrates,invertebrates,
1
Bunyaviridae,Orthobunyavirus,California
seg. S
X73468

human

encephalitis virus

Maguari virus
NC_001926
vertebrates,invertebrates,
4
Bunyaviridae,Orthobunyavirus,Bunyamwera
seg. M
AY286444,AY286443

human

virus

,AY286445,AY28644

6

Maldonado virus
NC_015373
vertebrates,invertebrates,
1
Bunyaviridae,Phlebovirus,Candiru virus
seg. M
HM119414

human

Maldonado virus
NC_015374
vertebrates,invertebrates,
1
Bunyaviridae,Phlebovirus,Candiru virus
seg. L
HM119413

human

Maldonado virus
NC_015375
vertebrates,invertebrates,
1
Bunyaviridae,Phlebovirus,Candiru virus
seg. S
HM119415

human

Massilia virus
NC_006318
vertebrates,invertebrates,
1
Bunyaviridae,Phlebovirus,Sandfly fever
seg. S
EU725773

human

Naples virus

Massilia virus
NC_006319
vertebrates,invertebrates,
1
Bunyaviridae,Phlebovirus,Sandfly fever
seg. L
EU725771

human

Naples virus

Massilia virus
NC_006320
vertebrates,invertebrates,
1
Bunyaviridae,Phlebovirus,Sandfly fever
seg. M
EU725772

human

Naples virus

Mayaro virus
NC_003417
vertebrates,invertebrates,
2
Togaviridae,Alphavirus,Mayaro virus
—
DQ001069,AF237947

human

Mboke virus
NC_001927
vertebrates,invertebrates,
1
Bunyaviridae,Orthobunyavirus,Bunyamwera
seg. S
AY593727

human

virus

Melao virus
NC_004109
vertebrates,invertebrates,
1
Bunyaviridae,Orthobunyavirus,California
seg. M
U88057

human

encephalitis virus

Modoc virus
NC_003635
vertebrates,invertebrates,
1
Flaviviridae,Flavivirus,Modoc virus
—
AJ242984

human

Montana myotis
NC_004119
vertebrates,invertebrates,
1
Flaviviridae,Flavivirus,Montana myotis
—
AJ299445

leukoencephalitis virus

human

leukoencephalitis virus

Morro Bay virus
NC_004110
vertebrates,invertebrates,
1
Bunyaviridae,Orthobunyavirus,California
seg. S
U31989

human

encephalitis virus

Morumbi virus
NC_015373
vertebrates,invertebrates,
1
Bunyaviridae,Phlebovirus,Candiru virus
seg. M
HM119423

human

Morumbi virus
NC_015374
vertebrates,invertebrates,
1
Bunyaviridae,Phlebovirus,Candiru virus
seg. L
HM119422

human

Morumbi virus
NC_015375
vertebrates,invertebrates,
1
Bunyaviridae,Phlebovirus,Candiru virus
seg. S
HM119424

human

Mosquito flavivirus
NC_021069
vertebrates,invertebrates, 1

Flaviviridae,Flavivirus,Mosquito flavivirus
—
KC464457

human

Mucura virus
NC_015373
vertebrates,invertebrates,
1
Bunyaviridae,Phlebovirus,Candiru virus
seg. M
HM119420

human

Mucura virus
NC_015374
vertebrates,invertebrates,
1
Bunyaviridae,Phlebovirus,Candiru virus
seg. L
HM119419

human

Mucura virus
NC_015375
vertebrates,invertebrates,
1
Bunyaviridae,Phlebovirus,Candiru virus
seg. S
HM119421

human

Murray Valley encephalitis
NC_000943
vertebrates,invertebrates,
10
Flaviviridae,Flavivirus,Murray Valley
—
KC852193,JX123032,

virus

human

encephalitis virus

AF161266,KC852192

,KC852194,KC85219

5,KC852189,KC8521

90,KC852191,KC852

196

Murre virus
NC_005214
vertebrates,invertebrates,
1
Bunyaviridae,Phlebovirus,Uukuniemi virus
seg. L
JF838330

human

Murre virus
NC_005220
vertebrates,invertebrates,
1
Bunyaviridae,Phlebovirus,Uukuniemi virus
seg. M
JF838331

human

Ngari virus
NC_001926
vertebrates,invertebrates,
1
Bunyaviridae,Orthobunyavirus,Bunyamwera
seg. M
AY593725

human

virus

Ngari virus
NC_001927
vertebrates,invertebrates,
1
Bunyaviridae,Orthobunyavirus,Bunyamwera
seg. S
AY593729

human

virus

Nique virus
NC_015373
vertebrates,invertebrates,
1
Bunyaviridae,Phlebovirus,Candiru virus
seg. M
HM119426

human

Nique virus
NC_015374
vertebrates,invertebrates,
1
Bunyaviridae,Phlebovirus,Candiru virus
seg. L
HM119425

human

Nique virus
NC_015375
vertebrates,invertebrates,
1
Bunyaviridae,Phlebovirus,Candiru virus
seg. S
HM119427

human

Northway virus
NC_001927
vertebrates,invertebrates,
1
Bunyaviridae,Orthobunyavirus,Bunyamwera
seg. S
X73470

human

virus

Ntaya virus
NC_018705
vertebrates,invertebrates,
1
Flaviviridae,Flavivirus,Ntaya virus
—
JX236040

human

O'nyong-nyong virus
NC_001512
vertebrates,invertebrates,
2
Togaviridae,Alphavirus,O'nyong-nyong virus
—
AF079456,M20303

human

Omsk hemorrhagic fever
NC_005062
vertebrates,invertebrates,
4
Flaviviridae,Flavivirus,Omsk hemorrhagic
—
AY323489,AB507800

virus

human

fever virus

,AY438626,AY19380

5

Oriximina virus
NC_015373
vertebrates,invertebrates,
1
Bunyaviridae,Phlebovirus,Candiru virus
seg. M
HM119435

human

Oriximina virus
NC_015374
vertebrates,invertebrates,
1
Bunyaviridae,Phlebovirus,Candiru virus
seg. L
HM119434

human

Oriximina virus
NC_015375
vertebrates,invertebrates,
1
Bunyaviridae,Phlebovirus,Candiru virus
seg. S
HM119436

human

Oropouche virus
NC_005775
vertebrates,invertebrates,
2
Bunyaviridae,Orthobunyavirus,Oropouche
seg. M
AF312381,AF441119

human

virus

Oropouche virus
NC_005776
vertebrates,invertebrates,
1
Bunyaviridae,Orthobunyavirus,Oropouche
seg. L
AF484424

human

virus

Oropouche virus
NC_005777
vertebrates,invertebrates,
2
Bunyaviridae,Orthobunyavirus,Oropouche
seg. S
AY237111,AY117135

human

virus

Orthobunyavirus BX-
NC_018136
vertebrates,invertebrates,
3
Bunyaviridae,Phlebovirus,Severe fever with
seg. L
HQ642766,JF682773,

2010/Henan/CHN

human

thrombocytopenia syndrome virus

JF682776

Orthobunyavirus BX-
NC_018137
vertebrates,invertebrates,
3
Bunyaviridae,Phlebovirus,Severe fever with
seg. S
HQ642768,JF682778,

2010/Henan/CHN

human

thrombocytopenia syndrome virus

JF682775

Orthobunyavirus BX-
NC_018138
vertebrates,invertebrates,
3
Bunyaviridae,Phlebovirus,Severe fever with
seg. M
JF682774,JF682777,

2010/Henan/CHN

human

thrombocytopenia syndrome virus

HQ642767

Peaton virus
NC_018463
vertebrates,invertebrates,
1
Bunyaviridae,Orthobunyavirus,Shamonda
seg. L
HE795093

human

virus

Peaton virus
NC_018464
vertebrates,invertebrates,
1
Bunyaviridae,Orthobunyavirus,Shamonda
seg. S
HE795095

human

virus

Peaton virus
NC_018467
vertebrates,invertebrates,
1
Bunyaviridae,Orthobunyavirus,Shamonda
seg. M
HE795094

human

virus

Phlebovirus J52007-01
NC_018136
vertebrates,invertebrates,
1
Bunyaviridae,Phlebovirus,Severe fever with
seg. L
JF837593

human

thrombocytopenia syndrome virus

Phlebovirus J52007-01
NC_018138
vertebrates,invertebrates,
1
Bunyaviridae,Phlebovirus,Severe fever with
seg. M
JF837594

human

thrombocytopenia syndrome virus

Phlebovirus J52010-014
NC_018136
vertebrates,invertebrates,
1
Bunyaviridae,Phlebovirus,Severe fever with
seg. L
JQ317169

human

thrombocytopenia syndrome virus

Phlebovirus J52010-014
NC_018137
vertebrates,invertebrates,
1
Bunyaviridae,Phlebovirus,Severe fever with
seg. S
JQ317171

human

thrombocytopenia syndrome virus

Phlebovirus J52010-014
NC_018138
vertebrates,invertebrates,
1
Bunyaviridae,Phlebovirus,Severe fever with
seg. M
JQ317170

human

thrombocytopenia syndrome virus

Phlebovirus J52010-015
NC_018136
vertebrates,invertebrates,
1
Bunyaviridae,Phlebovirus,Severe fever with
seg. L
JQ317172

human

thrombocytopenia syndrome virus

Phlebovirus J52010-015
NC_018137
vertebrates,invertebrates,
1
Bunyaviridae,Phlebovirus,Severe fever with
seg. S
JQ317174

human

thrombocytopenia syndrome virus

Phlebovirus J52010-015
NC_018138
vertebrates,invertebrates,
1
Bunyaviridae,Phlebovirus,Severe fever with
seg. M
JQ317173

human

thrombocytopenia syndrome virus

Phlebovirus J52010-018
NC_018136
vertebrates,invertebrates,
1
Bunyaviridae,Phlebovirus,Severe fever with
seg. L
JQ317175

human

thrombocytopenia syndrome virus

Phlebovirus JS2010-018
NC_018137
vertebrates,invertebrates,
1
Bunyaviridae,Phlebovirus,Severe fever with
seg. S
JQ317177

human

thrombocytopenia syndrome virus

Phlebovirus JS2010-018
NC_018138
vertebrates,invertebrates,
1
Bunyaviridae,Phlebovirus,Severe fever with
seg. M
JQ317176

human

thrombocytopenia syndrome virus

Phlebovirus JS2010-019
NC_018136
vertebrates,invertebrates,
1
Bunyaviridae,Phlebovirus,Severe fever with
seg. L
JQ317178

human

thrombocytopenia syndrome virus

Phlebovirus JS2010-019
NC_018137
vertebrates,invertebrates,
1
Bunyaviridae,Phlebovirus,Severe fever with
seg. S
JQ317180

human

thrombocytopenia syndrome virus

Phlebovirus JS2010-019
NC_018138
vertebrates,invertebrates,
1
Bunyaviridae,Phlebovirus,Severe fever with
seg. M
JQ317179

human

thrombocytopenia syndrome virus

Phlebovirus JS24
NC_018136
vertebrates,invertebrates,
1
Bunyaviridae,Phlebovirus,Severe fever with
seg. L
HQ830163

human

thrombocytopenia syndrome virus

Phlebovirus JS24
NC_018137
vertebrates,invertebrates,
1
Bunyaviridae,Phlebovirus,Severe fever with
seg. S
HQ830165

human

thrombocytopenia syndrome virus

Phlebovirus JS24
NC_018138
vertebrates,invertebrates,
1
Bunyaviridae,Phlebovirus,Severe fever with
seg. M
HQ830164

human

thrombocytopenia syndrome virus

Phlebovirus JS26
NC_018136
vertebrates,invertebrates,
1
Bunyaviridae,Phlebovirus,Severe fever with
seg. L
HQ830166

human

thrombocytopenia syndrome virus

Phlebovirus JS26
NC_018137
vertebrates,invertebrates,
1
Bunyaviridae,Phlebovirus,Severe fever with
seg. S
HQ830168

human

thrombocytopenia syndrome virus

Phlebovirus JS26
NC_018138
vertebrates,invertebrates,
1
Bunyaviridae,Phlebovirus,Severe fever with
seg. M
HQ830167

human

thrombocytopenia syndrome virus

Phlebovirus JS6
NC_018136
vertebrates,invertebrates,
1
Bunyaviridae,Phlebovirus,Severe fever with
seg. L
HQ830169

human

thrombocytopenia syndrome virus

Phlebovirus JS6
NC_018137
vertebrates,invertebrates,
1
Bunyaviridae,Phlebovirus,Severe fever with
seg. S
HQ830171

human

thrombocytopenia syndrome virus

Phlebovirus JS6
NC_018138
vertebrates,invertebrates,
1
Bunyaviridae,Phlebovirus,Severe fever with
seg. M
HQ830170

human

thrombocytopenia syndrome virus

Powassan virus
NC_003687
vertebrates,invertebrates,
12
Flaviviridae,Flavivirus,Powassan virus
—
HM440560,HM44056

human

3,HM440559,HM4405

58,HQ231415,EU770

575,EU543649,L0643

6,HQ231414,HM4405

62,HM440561,EU670

438

Precarious point virus
NC_005214
vertebrates,invertebrates,
1
Bunyaviridae,Phlebovirus,Uukuniemi virus
seg. L
HM566181

human

Precarious point virus
NC_005220
vertebrates,invertebrates,
1
Bunyaviridae,Phlebovirus,Uukuniemi virus
seg. M
HM566179

human

Precarious point virus
NC_005221
vertebrates,invertebrates,
1
Bunyaviridae,Phlebovirus,Uukuniemi virus
seg. S
HM566180

human

Quang Binh virus
NC_012671
vertebrates,invertebrates,
1
Flaviviridae,Flavivirus,Quang Binh virus
—
FJ644291

human

RML-105355 virus
NC_005214
vertebrates,invertebrates,
1
Bunyaviridae,Phlebovirus,Uukuniemi virus
seg. L
JF838333

human

RML-105355 virus
NC_005220
vertebrates,invertebrates,
1
Bunyaviridae,Phlebovirus,Uukuniemi virus
seg. M
JF838334

human

Razdan virus
NC_022630
vertebrates,invertebrates,
1
Bunyaviridae,Phlebovirus,Razdan virus
seg. L
KC335496

human

Razdan virus
NC_022631
vertebrates,invertebrates,
1
Bunyaviridae,Phlebovirus,Razdan virus
seg. M
KC335497

human

Razdan virus
NC_022632
vertebrates,invertebrates,
1
Bunyaviridae,Phlebovirus,Razdan virus
seg. S
KC335498

human

Rift Valley fever virus
NC_014395
vertebrates,invertebrates,
50
Bunyaviridae,Phlebovirus,Rift Valley fever
seg. S
DQ380155,DQ38015

human

virus

9,DQ380143,DQ3801

50,JF311390,DQ3801

74,DQ380161,DQ380

158,DQ380182,DQ38

0171,DQ380170,JF31

1389,JF311393,DQ38

0178,JF311394,JF31

1388,DQ380172,DQ3

80169,DQ380145,DQ

380163,DQ380144,D

Q380147,JF311387,D

Q380152,DQ380165,

DQ380149,DQ38014

6,DQ380168,DQ3801

60,DQ380154,DQ380

175,DQ380173,DQ38

0181,DQ380148,DQ3

80176,DQ380156,DQ

380153,JF311391,JF

311392,DQ380164,JF

311386,X53771,DQ3

80179,DQ380162,DQ

380157,DQ380151,D

0380177,DQ380180,

DQ380166,DQ38016

7

Rift Valley fever virus
NC_014396
vertebrates,invertebrates,
56
Bunyaviridae,Phlebovirus,Rift Valley fever
seg. M
DQ380204,DQ38020

human

virus

9,JF311382,JF31137

9,JF311384,DQ38018

9,DQ380203,DQ3801

98,DQ380220,DQ380

206,DQ380195,DQ38

0184,JF311385,DQ38

0202,DQ380188,M25

276,DQ380196,JF309

200,DQ380208,DQ38

0218,DQ380185,JF31

1377,JF311381,DQ38

0193,DQ380214,DQ3

80187,JF311380,DQ3

80186,DQ380190,JF3

11378,DQ380197,DQ

380199,DQ380200,D

0380183,M11157,DQ

380219,DQ380221,D

0380210,DQ380215,

DQ380201,DQ38021

6,DQ380207,JF31138

3,DQ380211,EF4671

77,DQ3801 94,DQ380

212,DQ380192,DQ38

0222,DQ380191,EF4

67178,DQ380217,EF

460404,HQ00951 2,D

0380213,DQ380205

Rift Valley fever virus
NC_014397
vertebrates,invertebrates,
50
Bunyaviridae,Phlebovirus,Rift Valley fever
seg. L
DQ375400,DQ37542

human

virus

6,DQ375421,DQ3754

07,DQ375431,DQ375

398,DQ375397,JF311

371,JF311373,DQ375

419,DQ375409,DQ37

5399,JF311368,DQ37

5406,DQ375403,DQ3

75410,DQ375429,DQ

375414,JF311375,DQ

375401,DQ375417,D

0375425,JF311369,D

0375420,DQ375424,

DQ375395,DQ37541

5,DQ375432,DQ3754

22,DQ375412,DQ375

418,X56464,DQ3754

05,DQ375423,DQ375

413,DQ375427,DQ37

5434,JF311376,JF31

1372,DQ375408,DQ3

75396,JF311370,JF3

11374,DQ375433,DQ

375416,DQ375404,D

0375411,DQ375428,

DQ375402,DQ37543

0

Rio Bravo virus
NC_003675
vertebrates,invertebrates,
2
Flaviviridae,Flavivirus,Rio Bravo virus
—
JQ582840,AF144692

human

Rocio virus
NC_009028
vertebrates,invertebrates,
1
Flaviviridae,Flavivirus,Ilheus virus
—
AY632542

human

Ross River virus
NC_001544
vertebrates,invertebrates,
9
Togaviridae,Alphavirus,Ross River virus
—
GQ433355,GQ43335

human

7,GQ433359,GQ4333

54,GQ433356,DQ226

993,GQ433360,M201

62,GQ433358

Royal Farm virus
NC_006947
vertebrates,invertebrates,
1
Flaviviridae,Flavivirus,Royal Farm virus
—
DQ235149

human

SFTS virus AH12
NC_018136
vertebrates,invertebrates,
1
Bunyaviridae,Phlebovirus,Severe fever with
seg. L
HQ116417

human

thrombocytopenia syndrome virus

SFTS virus AH12
NC_018137
vertebrates,invertebrates,
1
Bunyaviridae,Phlebovirus,Severe fever with
seg. S
HQ141591

human

thrombocytopenia syndrome virus

SFTS virus AH12
NC_018138
vertebrates,invertebrates,
1
Bunyaviridae,Phlebovirus,Severe fever with
seg. M
HQ141590

human

thrombocytopenia syndrome virus

SFTS virus AH15
NC_018136
vertebrates,invertebrates,
1
Bunyaviridae,Phlebovirus,Severe fever with
seg. L
HQ141592

human

thrombocytopenia syndrome virus

SFTS virus AH15
NC_018137
vertebrates,invertebrates,
1
Bunyaviridae,Phlebovirus,Severe fever with
seg. S
HQ141594

human

thrombocytopenia syndrome virus

SFTS virus AH15
NC_018138
vertebrates,invertebrates,
1
Bunyaviridae,Phlebovirus,Severe fever with
seg. M
HQ141593

human

thrombocytopenia syndrome virus

SFTS virus HB29
NC_018136
vertebrates,invertebrates,
1
Bunyaviridae,Phlebovirus,Severe fever with
seg. L
HM745930

human

thrombocytopenia syndrome virus

SFTS virus HB29
NC_018137
vertebrates,invertebrates,
1
Bunyaviridae,Phlebovirus,Severe fever with
seg. S
HM745932

human

thrombocytopenia syndrome virus

SFTS virus HB29
NC_018138
vertebrates,invertebrates,
1
Bunyaviridae,Phlebovirus,Severe fever with
seg. M
HM745931

human

thrombocytopenia syndrome virus

SFTS virus HN13
NC_018136
vertebrates,invertebrates,
1
Bunyaviridae,Phlebovirus,Severe fever with
seg. L
HQ141598

human

thrombocytopenia syndrome virus

SFTS virus HN13
NC_018137
vertebrates,invertebrates,
1
Bunyaviridae,Phlebovirus,Severe fever with
seg. S
HQ141600

human

thrombocytopenia syndrome virus

SFTS virus HN13
NC_018138
vertebrates,invertebrates,
1
Bunyaviridae,Phlebovirus,Severe fever with
seg. M
HQ141599

human

thrombocytopenia syndrome virus

SFTS virus HN6
NC_018136
vertebrates,invertebrates,
1
Bunyaviridae,Phlebovirus,Severe fever with
seg. L
HQ141595

human

thrombocytopenia syndrome virus

SFTS virus HN6
NC_018137
vertebrates,invertebrates,
1
Bunyaviridae,Phlebovirus,Severe fever with
seg. S
HQ141597

human

thrombocytopenia syndrome virus

SFTS virus HN6
NC_018138
vertebrates,invertebrates,
1
Bunyaviridae,Phlebovirus,Severe fever with
seg. M
HQ141596

human

thrombocytopenia syndrome virus

SFTS virus HNXY_115
NC_018136
vertebrates,invertebrates,
1
Bunyaviridae,Phlebovirus,Severe fever with
seg. L
KC292338

human

thrombocytopenia syndrome virus

SFTS virus HNXY_115
NC_018137
vertebrates,invertebrates,
1
Bunyaviridae,Phlebovirus,Severe fever with
seg. S
KC292285

human

thrombocytopenia syndrome virus

SFTS virus HNXY_115
NC_018138
vertebrates,invertebrates,
1
Bunyaviridae,Phlebovirus,Severe fever with
seg. M
KC292312

human

thrombocytopenia syndrome virus

SFTS virus HNXY_130
NC_018136
vertebrates,invertebrates,
1
Bunyaviridae,Phlebovirus,Severe fever with
seg. L
KC292342

human

thrombocytopenia syndrome virus

SFTS virus HNXY_130
NC_018137
vertebrates,invertebrates/
1
Bunyaviridae,Phlebovirus,Severe fever with
seg. S
KC292289

human

thrombocytopenia syndrome virus

SFTS virus HNXY_130
NC_018138
vertebrates,invertebrates,
1
Bunyaviridae,Phlebovirus,Severe fever with
seg. M
KC292316

human

thrombocytopenia syndrome virus

SFTS virus HNXY_144
NC_018136
vertebrates,invertebrates,
1
Bunyaviridae,Phlebovirus,Severe fever with
seg. L
KC292333

human

thrombocytopenia syndrome virus

SFTS virus HNXY_144
NC_018137
vertebrates,invertebrates,
1
Bunyaviridae,Phlebovirus,Severe fever with
seg. S
KC292280

human

thrombocytopenia syndrome virus

SFTS virus HNXY_144
NC_018138
vertebrates,invertebrates,
1
Bunyaviridae,Phlebovirus,Severe fever with
seg. M
KC292307

human

thrombocytopenia syndrome virus

SFTS virus HNXY_157
NC_018136
vertebrates,invertebrates,
1
Bunyaviridae,Phlebovirus,Severe fever with
seg. L
KC292331

human

thrombocytopenia syndrome virus

SFTS virus HNXY_157
NC_018137
vertebrates,invertebrates,
1
Bunyaviridae,Phlebovirus,Severe fever with
seg. S
KC292278

human

thrombocytopenia syndrome virus

SFTS virus HNXY_157
NC_018138
vertebrates,invertebrates,
1
Bunyaviridae,Phlebovirus,Severe fever with
seg. M
KC292305

human

thrombocytopenia syndrome virus

SFTS virus HNXY_164
NC_018136
vertebrates,invertebrates,
1
Bunyaviridae,Phlebovirus,Severe fever with
seg. L
KC292340

human

thrombocytopenia syndrome virus

SFTS virus HNXY_164
NC_018137
vertebrates,invertebrates,
1
Bunyaviridae,Phlebovirus,Severe fever with
seg. S
KC292287

human

thrombocytopenia syndrome virus

SFTS virus HNXY_164
NC_018138
vertebrates,invertebrates,
1
Bunyaviridae,Phlebovirus,Severe fever with
seg. M
KC292314

human

thrombocytopenia syndrome virus

SFTS virus HNXY_170
NC_018136
vertebrates,invertebrates,
1
Bunyaviridae,Phlebovirus,Severe fever with
seg. L
KC292353

human

thrombocytopenia syndrome virus

SFTS virus HNXY_170
NC_018137
vertebrates,invertebrates,
1
Bunyaviridae,Phlebovirus,Severe fever with
seg. S
KC292277

human

thrombocytopenia syndrome virus

SFTS virus HNXY_170
NC_018138
vertebrates,invertebrates,
1
Bunyaviridae,Phlebovirus,Severe fever with
seg. M
KC292304

human

thrombocytopenia syndrome virus

SFTS virus HNXY_174
NC_018136
vertebrates,invertebrates,
1
Bunyaviridae,Phlebovirus,Severe fever with
seg. L
KC292332

human

thrombocytopenia syndrome virus

SFTS virus HNXY_174
NC_018137
vertebrates,invertebrates,
1
Bunyaviridae,Phlebovirus,Severe fever with
seg. S
KC292279

human

thrombocytopenia syndrome virus

SFTS virus HNXY_174
NC_018138
vertebrates,invertebrates,
1
Bunyaviridae,Phlebovirus,Severe fever with
seg. M
KC292306

human

thrombocytopenia syndrome virus

SFTS virus HNXY_182
NC_018136
vertebrates,invertebrates,
1
Bunyaviridae,Phlebovirus,Severe fever with
seg. L
KC292350

human

thrombocytopenia syndrome virus

SFTS virus HNXY_182
NC_018137
vertebrates,invertebrates,
1
Bunyaviridae,Phlebovirus,Severe fever with
seg. S
KC292297

human

thrombocytopenia syndrome virus

SFTS virus HNXY_182
NC_018138
vertebrates,invertebrates,
1
Bunyaviridae,Phlebovirus,Severe fever with
seg. M
KC292324

human

thrombocytopenia syndrome virus

SFTS virus HNXY_186
NC_018136
vertebrates,invertebrates,
1
Bunyaviridae,Phlebovirus,Severe fever with
seg. L
KC292334

human

thrombocytopenia syndrome virus

SFTS virus HNXY_186
NC_018137
vertebrates,invertebrates,
1
Bunyaviridae,Phlebovirus,Severe fever with
seg. S
KC292281

human

thrombocytopenia syndrome virus

SFTS virus HNXY_186
NC_018138
vertebrates,invertebrates,
1
Bunyaviridae,Phlebovirus,Severe fever with
seg. M
KC292308

human

thrombocytopenia syndrome virus

SFTS virus HNXY_188
NC_018136
vertebrates,invertebrates,
1
Bunyaviridae,Phlebovirus,Severe fever with
seg. L
KC292328

human

thrombocytopenia syndrome virus

SFTS virus HNXY_188
NC_018137
vertebrates,invertebrates,
1
Bunyaviridae,Phlebovirus,Severe fever with
seg. S
KC292274

human

thrombocytopenia syndrome virus

SFTS virus HNXY_188
NC_018138
vertebrates,invertebrates,
1
Bunyaviridae,Phlebovirus,Severe fever with
seg. M
KC292301

human

thrombocytopenia syndrome virus

SFTS virus HNXY_191
NC_018136
vertebrates,invertebrates,
1
Bunyaviridae,Phlebovirus,Severe fever with
seg. L
KC292349

human

thrombocytopenia syndrome virus

SFTS virus HNXY_191
NC_018137
vertebrates,invertebrates,
1
Bunyaviridae,Phlebovirus,Severe fever with
seg. S
KC292296

human

thrombocytopenia syndrome virus

SFTS virus HNXY_191
NC_018138
vertebrates,invertebrates,
1
Bunyaviridae,Phlebovirus,Severe fever with
seg. M
KC292323

human

thrombocytopenia syndrome virus

SFTS virus HNXY_195
NC_018136
vertebrates,invertebrates,
1
Bunyaviridae,Phlebovirus,Severe fever with
seg. L
KC292352

human

thrombocytopenia syndrome virus

SFTS virus HNXY_195
NC_018137
vertebrates,invertebrates,
1
Bunyaviridae,Phlebovirus,Severe fever with
seg. S
KC292299

human

thrombocytopenia syndrome virus

SFTS virus HNXY_195
NC_018138
vertebrates,invertebrates,
1
Bunyaviridae,Phlebovirus,Severe fever with
seg. M
KC292326

human

thrombocytopenia syndrome virus

SFTS virus HNXY_2
NC_018136
vertebrates,invertebrates,
1
Bunyaviridae,Phlebovirus,Severe fever with
seg. L
KC292344

human

thrombocytopenia syndrome virus

SFTS virus HNXY_2
NC_018137
vertebrates,invertebrates,
1
Bunyaviridae,Phlebovirus,Severe fever with
seg. S
KC292291

human

thrombocytopenia syndrome virus

SFTS virus HNXY_2
NC_018138
vertebrates,invertebrates,
1
Bunyaviridae,Phlebovirus,Severe fever with
seg. M
KC292318

human

thrombocytopenia syndrome virus

SFTS virus HNXY_202
NC_018136
vertebrates,invertebrates,
1
Bunyaviridae,Phlebovirus,Severe fever with
seg. L
KC292351

human

thrombocytopenia syndrome virus

SFTS virus HNXY_202
NC_018137
vertebrates,invertebrates,
1
Bunyaviridae,Phlebovirus,Severe fever with
seg. S
KC292298

human

thrombocytopenia syndrome virus

SFTS virus HNXY_202
NC_018138
vertebrates,invertebrates,
1
Bunyaviridae,Phlebovirus,Severe fever with
seg. M
KC292325

human

thrombocytopenia syndrome virus

SFTS virus HNXY_206
NC_018136
vertebrates,invertebrates,
1
Bunyaviridae,Phlebovirus,Severe fever with
seg. L
KC292329

human

thrombocytopenia syndrome virus

SFTS virus HNXY_206
NC_018137
vertebrates,invertebrates,
1
Bunyaviridae,Phlebovirus,Severe fever with
seg. S
KC292275

human

thrombocytopenia syndrome virus

SFTS virus HNXY_206
NC_018138
vertebrates,invertebrates,
1
Bunyaviridae,Phlebovirus,Severe fever with
seg. M
KC292302

human

thrombocytopenia syndrome virus

SFTS virus HNXY_207
NC_018136
vertebrates,invertebrates,
1
Bunyaviridae,Phlebovirus,Severe fever with
seg. L
KC292341

human

thrombocytopenia syndrome virus

SFTS virus HNXY_207
NC_018137
vertebrates,invertebrates,
1
Bunyaviridae,Phlebovirus,Severe fever with
seg. S
KC292288

human

thrombocytopenia syndrome virus

SFTS virus HNXY_207
NC_018138
vertebrates,invertebrates,
1
Bunyaviridae,Phlebovirus,Severe fever with
seg. M
KC292315

human

thrombocytopenia syndrome virus

SFTS virus HNXY_212
NC_018136
vertebrates,invertebrates,
1
Bunyaviridae,Phlebovirus,Severe fever with
seg. L
KC292327

human

thrombocytopenia syndrome virus

SFTS virus HNXY_212
NC_018137
vertebrates,invertebrates,
1
Bunyaviridae,Phlebovirus,Severe fever with
seg. S
KC292273

human

thrombocytopenia syndrome virus

SFTS virus HNXY_212
NC_018138
vertebrates,invertebrates,
1
Bunyaviridae,Phlebovirus,Severe fever with
seg. M
KC292300

human

thrombocytopenia syndrome virus

SFTS virus HNXY_224
NC_018136
vertebrates,invertebrates,
1
Bunyaviridae,Phlebovirus,Severe fever with
seg. L
KC292343

human

thrombocytopenia syndrome virus

SFTS virus HNXY_224
NC_018137
vertebrates,invertebrates,
1
Bunyaviridae,Phlebovirus,Severe fever with
seg. S
KC292290

human

thrombocytopenia syndrome virus

SFTS virus HNXY_224
NC_018138
vertebrates,invertebrates,
1
Bunyaviridae,Phlebovirus,Severe fever with
seg. M
KC292317

human

thrombocytopenia syndrome virus

SFTS virus HNXY_231
NC_018136
vertebrates,invertebrates,
1
Bunyaviridae,Phlebovirus,Severe fever with
seg. L
KC292339

human

thrombocytopenia syndrome virus

SFTS virus HNXY_231
NC_018137
vertebrates,invertebrates,
1
Bunyaviridae,Phlebovirus,Severe fever with
seg. S
KC292286

human

thrombocytopenia syndrome virus

SFTS virus HNXY_231
NC_018138
vertebrates,invertebrates,
1
Bunyaviridae,Phlebovirus,Severe fever with
seg. M
KC292313

human

thrombocytopenia syndrome virus

SFTS virus HNXY_245
NC_018136
vertebrates,invertebrates,
1
Bunyaviridae,Phlebovirus,Severe fever with
seg. L
KC292346

human

thrombocytopenia syndrome virus

SFTS virus HNXY_245
NC_018137
vertebrates,invertebrates,
1
Bunyaviridae,Phlebovirus,Severe fever with
seg. S
KC292293

human

thrombocytopenia syndrome virus

SFTS virus HNXY_245
NC_018138
vertebrates,invertebrates,
1
Bunyaviridae,Phlebovirus,Severe fever with
seg. M
KC292320

human

thrombocytopenia syndrome virus

SFTS virus HNXY_262
NC_018136
vertebrates,invertebrates,
1
Bunyaviridae,Phlebovirus,Severe fever with
seg. L
KC292335

human

thrombocytopenia syndrome virus

SFTS virus HNXY_262
NC_018137
vertebrates,invertebrates,
1
Bunyaviridae,Phlebovirus,Severe fever with
seg. S
KC292282

human

thrombocytopenia syndrome virus

SFTS virus HNXY_262
NC_018138
vertebrates,invertebrates,
1
Bunyaviridae,Phlebovirus,Severe fever with
seg. M
KC292309

human

thrombocytopenia syndrome virus

SFTS virus HNXY_278
NC_018136
vertebrates,invertebrates,
1
Bunyaviridae,Phlebovirus,Severe fever with
seg. L
KC292348

human

thrombocytopenia syndrome virus

SFTS virus HNXY_278
NC_018137
vertebrates,invertebrates,
1
Bunyaviridae,Phlebovirus,Severe fever with
seg. S
KC292295

human

thrombocytopenia syndrome virus

SFTS virus HNXY_278
NC_018138
vertebrates,invertebrates,
1
Bunyaviridae,Phlebovirus,Severe fever with
seg. M
KC292322

human

thrombocytopenia syndrome virus

SFTS virus HNXY_293
NC_018136
vertebrates,invertebrates,
1
Bunyaviridae,Phlebovirus,Severe fever with
seg. L
KC292330

human

thrombocytopenia syndrome virus

SFTS virus HNXY_293
NC_018137
vertebrates,invertebrates,
1
Bunyaviridae,Phlebovirus,Severe fever with
seg. S
KC292276

human

thrombocytopenia syndrome virus

SFTS virus HNXY_293
NC_018138
vertebrates,invertebrates,
1
Bunyaviridae,Phlebovirus,Severe fever with
seg. M
KC292303

human

thrombocytopenia syndrome virus

SFTS virus HNXY_31
NC_018136
vertebrates,invertebrates,
1
Bunyaviridae,Phlebovirus,Severe fever with
seg. L
KC292336

human

thrombocytopenia syndrome virus

SFTS virus HNXY_31
NC_018137
vertebrates,invertebrates,
1
Bunyaviridae,Phlebovirus,Severe fever with
seg. S
KC292283

human

thrombocytopenia syndrome virus

SFTS virus HNXY_31
NC_018138
vertebrates,invertebrates,
1
Bunyaviridae,Phlebovirus,Severe fever with
seg. M
KC292310

human

thrombocytopenia syndrome virus

SFTS virus HNXY_319
NC_018136
vertebrates,invertebrates,
1
Bunyaviridae,Phlebovirus,Severe fever with
seg. L
KC292345

human

thrombocytopenia syndrome virus

SFTS virus HNXY_319
NC_018137
vertebrates,invertebrates,
1
Bunyaviridae,Phlebovirus,Severe fever with
seg. S
KC292292

human

thrombocytopenia syndrome virus

SFTS virus HNXY_319
NC_018138
vertebrates,invertebrates,
1
Bunyaviridae,Phlebovirus,Severe fever with
seg. M
KC292319

human

thrombocytopenia syndrome virus

SFTS virus HNXY_327
NC_018136
vertebrates,invertebrates,
1
Bunyaviridae,Phlebovirus,Severe fever with
seg. L
KC292347

human

thrombocytopenia syndrome virus

SFTS virus HNXY_327
NC_018137
vertebrates,invertebrates,
1
Bunyaviridae,Phlebovirus,Severe fever with
seg. S
KC292294

human

thrombocytopenia syndrome virus

SFTS virus HNXY_327
NC_018138
vertebrates,invertebrates,
1
Bunyaviridae,Phlebovirus,Severe fever with
seg. M
KC292321

human

thrombocytopenia syndrome virus

SFTS virus HNXY_93
NC_018136
vertebrates,invertebrates,
1
Bunyaviridae,Phlebovirus,Severe fever with
seg. L
KC292337

human

thrombocytopenia syndrome virus

SFTS virus HNXY_93
NC_018137
vertebrates,invertebrates,
1
Bunyaviridae,Phlebovirus,Severe fever with
seg. S
KC292284

human

thrombocytopenia syndrome virus

SFTS virus HNXY_93
NC_018138
vertebrates,invertebrates,
1
Bunyaviridae,Phlebovirus,Severe fever with
seg. M
KC292311

human

thrombocytopenia syndrome virus

SFTS virus JS3
NC_018136
vertebrates,invertebrates,
1
Bunyaviridae,Phlebovirus,Severe fever with
seg. L
HQ141601

human

thrombocytopenia syndrome virus

SFTS virus JS3
NC_018137
vertebrates,invertebrates,
1
Bunyaviridae,Phlebovirus,Severe fever with
seg. S
HQ141603

human

thrombocytopenia syndrome virus

SFTS virus JS3
NC_018138
vertebrates,invertebrates,
1
Bunyaviridae,Phlebovirus,Severe fever with
seg. M
HQ141602

human

thrombocytopenia syndrome virus

SFTS virus JS4
NC_018136
vertebrates,invertebrates,
1
Bunyaviridae,Phlebovirus,Severe fever with
seg. L
HQ141604

human

thrombocytopenia syndrome virus

SFTS virus JS4
NC_018137
vertebrates,invertebrates,
1
Bunyaviridae,Phlebovirus,Severe fever with
seg. S
HQ141606

human

thrombocytopenia syndrome virus

SFTS virus JS4
NC_018138
vertebrates,invertebrates,
1
Bunyaviridae,Phlebovirus,Severe fever with
seg. M
HQ141605

human

thrombocytopenia syndrome virus

SFTS virus LN2
NC_018136
vertebrates,invertebrates,
1
Bunyaviridae,Phlebovirus,Severe fever with
seg. L
HQ141607

human

thrombocytopenia syndrome virus

SFTS virus LN2
NC_018137
vertebrates,invertebrates,
1
Bunyaviridae,Phlebovirus,Severe fever with
seg. S
HQ141609

human

thrombocytopenia syndrome virus

SFTS virus LN2
NC_018138
vertebrates,invertebrates,
1
Bunyaviridae,Phlebovirus,Severe fever with
seg. M
HQ141608

human

thrombocytopenia syndrome virus

SFTS virus LN3
NC_018136
vertebrates,invertebrates,
1
Bunyaviridae,Phlebovirus,Severe fever with
seg. L
HQ141610

human

thrombocytopenia syndrome virus

SFTS virus LN3
NC_018137
vertebrates,invertebrates,
1
Bunyaviridae,Phlebovirus,Severe fever with
seg. S
HQ141612

human

thrombocytopenia syndrome virus

SFTS virus LN3
NC_018138
vertebrates,invertebrates,
1
Bunyaviridae,Phlebovirus,Severe fever with
seg. M
HQ141611

human

thrombocytopenia syndrome virus

SFTS virus SD24
NC_018136
vertebrates,invertebrates,
1
Bunyaviridae,Phlebovirus,Severe fever with
seg. L
HM802200

human

thrombocytopenia syndrome virus

SFTS virus SD24
NC_018137
vertebrates,invertebrates,
1
Bunyaviridae,Phlebovirus,Severe fever with
seg. S
HM802205

human

thrombocytopenia syndrome virus

SFTS virus SD24
NC_018138
vertebrates,invertebrates,
1
Bunyaviridae,Phlebovirus,Severe fever with
seg. M
HM802201

human

thrombocytopenia syndrome virus

SFTS virus SD4
NC_018136
vertebrates,invertebrates,
1
Bunyaviridae,Phlebovirus,Severe fever with
seg. L
HM802202

human

thrombocytopenia syndrome virus

SFTS virus SD4
NC_018137
vertebrates,invertebrates,
1
Bunyaviridae,Phlebovirus,Severe fever with
seg. S
HM802204

human

thrombocytopenia syndrome virus

SFTS virus SD4
NC_018138
vertebrates,invertebrates,
1
Bunyaviridae,Phlebovirus,Severe fever with
seg. M
HM802203

human

thrombocytopenia syndrome virus

Sabo virus
NC_009894
vertebrates,invertebrates,
1
Bunyaviridae,Orthobunyavirus,Akabane virus
seg. L
HE795096

human

Sabo virus
NC_009895
vertebrates,invertebrates,
1
Bunyaviridae,Orthobunyavirus,Akabane virus
seg. M
HE795097

human

Sabo virus
NC_009896
vertebrates,invertebrates,
1
Bunyaviridae,Orthobunyavirus,Akabane virus
seg. S
HE795098

human

Sagiyama virus
NC_001544
vertebrates,invertebrates,
1
Togaviridae,Alphavirus,Ross River virus
—
AB032553

human

San Angelo virus
NC_004109
vertebrates,invertebrates,
1
Bunyaviridae,Orthobunyavirus,California
seg. M
AF123486

human

encephalitis virus

San Angelo virus
NC_004110
vertebrates,invertebrates,
1
Bunyaviridae,Orthobunyavirus,California
seg. S
U47139

human

encephalitis virus

Sand fever Naples-like
NC_006318
vertebrates,invertebrates,
2
Bunyaviridae,Phlebovirus,Sandfly fever
seg. S
HM566182,HM56617

virus

human

Naples virus

8

Sand fever Naples-like
NC_006319
vertebrates,invertebrates,
2
Bunyaviridae,Phlebovirus,Sandfly fever
seg. L
HM566176,HM56618

virus

human

Naples virus

3

Sand fever Naples-like
NC_006320
vertebrates,invertebrates,
1
Bunyaviridae,Phlebovirus,Sandfly fever
seg. M
HM566177

virus

human

Naples virus

Sandfly Sicilian Turkey
NC_015411
vertebrates,invertebrates,
1
Bunyaviridae,Phlebovirus,Sandfly fever
seg. M
GQ847512

virus

human

Sicilian virus

Sandfly Sicilian Turkey
NC_015412
vertebrates,invertebrates,
1
Bunyaviridae,Phlebovirus,Sandfly fever
seg. L
GQ847513

virus

human

Sicilian virus

Sandfly Sicilian Turkey
NC_015413
vertebrates,invertebrates,
1
Bunyaviridae,Phlebovirus,Sandfly fever
seg. S
GQ847511

virus

human

Sicilian virus

Sandfly fever Naples virus
NC_006318
vertebrates,invertebrates,
8
Bunyaviridae,Phlebovirus,Sandfly fever
seg. S
EF201831,HM566170

human

Naples virus

,HM566168,EF20182

8,EF201832,X53794,

EF201829,EF201830

Sandfly fever Naples virus
NC_006319
vertebrates,invertebrates,
3
Bunyaviridae,Phlebovirus,Sandfly fever
seg. L
HM566172,X68414,H

human

Naples virus

M566167

Sandfly fever Naples virus
NC_006320
vertebrates,invertebrates,
3
Bunyaviridae,Phlebovirus,Sandfly fever
seg. M
HM566171,HM56616

human

Naples virus

9,X89628

Sandfly fever sicilian virus
NC_015411
vertebrates,invertebrates,
1
Bunyaviridae,Phlebovirus,Sandfly fever
seg. M
U30500

human

Sicilian virus

Sandfly fever sicilian virus
NC_015413
vertebrates,invertebrates,
9
Bunyaviridae,Phlebovirus,Sandfly fever
seg. S
EF201826,AJ811547,

human

Sicilian virus

EF201825,EF201822,

JQ4418,EF201824,EF

201823,EF201827,G

U119908

Sango virus
NC_018463
vertebrates,invertebrates,
1
Bunyaviridae,Orthobunyavirus,Shamonda
seg. L
HE795099

human

virus

Sango virus
NC_018464
vertebrates,invertebrates,
1
Bunyaviridae,Orthobunyavirus,Shamonda
seg. S
HE795101

human

virus

Sango virus
NC_018467
vertebrates,invertebrates,
1
Bunyaviridae,Orthobunyavirus,Shamonda
seg. M
HE795100

human

virus

Sathuperi virus
NC_018461
vertebrates,invertebrates,
1
Bunyaviridae,Orthobunyavirus,Sathuperi virus
seg. L
HE795102

human

Sathuperi virus
NC_018462
vertebrates,invertebrates,
1
Bunyaviridae,Orthobunyavirus,Sathuperi virus
seg. S
HE795104

human

Sathuperi virus
NC_018466
vertebrates,invertebrates,
1
Bunyaviridae,Orthobunyavirus,Sathuperi virus
seg. M
HE795103

human

Sepik virus
NC_008719
vertebrates,invertebrates,
2
Flaviviridae,Flavivirus,Sepik virus
—
DQ837642,AY632543

human

Serra Norte virus
NC_015373
vertebrates,invertebrates,
1
Bunyaviridae,Phlebovirus,Candiru virus
seg. M
HM119429

human

Serra Norte virus
NC_015374
vertebrates,invertebrates,
1
Bunyaviridae,Phlebovirus,Candiru virus
seg. L
HM119428

human

Serra Norte virus
NC_015375
vertebrates,invertebrates,
1
Bunyaviridae,Phlebovirus,Candiru virus
seg. S
HM119430

human

Serra do Navio virus
NC_004110
vertebrates,invertebrates,
1
Bunyaviridae,Orthobunyavirus,California
seg. S
U47140

human

encephalitis virus

Severe fever with
NC_018136
vertebrates,invertebrates,
24
Bunyaviridae,Phlebovirus,Severe fever with
seg. L
KC505123,JQ733561

thrombocytopenia

human

thrombocytopenia syndrome virus

,KC505126,AB81798

syndrome virus

5,AB817984,JQ73356

4,JQ733567,JQ67093

4,KC505129,AB8179

83,KC473540,JQ684

871,KC505135,KC50

5132,AB817982,AB8

17979,AB817981,KC

505138,JQ670929,K

C505141,AB817980,

KC505144,KC473537

,AB817986

Severe fever with
NC_018137
vertebrates,invertebrates,
36
Bunyaviridae,Phlebovirus,Severe fever with
seg. S
AB817997,KC505131

thrombocytopenia

human

thrombocytopenia syndrome virus

,JQ693005,JQ693008

syndrome virus

,AB817996,KC50513

4,JQ670933,AB81800

2,KC505146,JQ6930

06,KC473539,JQ670

932,KC505140,KC50

5125,JQ733565,JQ69

3007,AB817998,JQ73

3562,AB818000,JQ73

3568,KC473542,JQ6

93010,AB817995,AB

818001,JQ693011,JQ

693002,KC505128,J

0693009,KC505143,

JQ693003,JQ693001,

JQ693012,AB817999,

JQ684873,JQ693004,

JQ693013

Severe fever with
NC_018138
vertebrates,invertebrates,
24
Bunyaviridae,Phlebovirus,Severe fever with
seg. M
KC473538,KC505136

thrombocytopenia

human

thrombocytopenia syndrome virus

,KC505145,JQ73356

syndrome virus

6,KC473541,KC5051

39,AB817992,AB817

994,JQ670930,AB817

990,AB817988,KC50

5142,AB817993,AB8

17989,JQ684872,JQ7

33563,KC505127,KC

505130,JQ733560,AB

817987,AB817991,K

C505133,KC505124,J

0670931

Shamonda virus
NC_018463
vertebrates,invertebrates,
1
Bunyaviridae,Orthobunyavirus,Shamonda
seg. L
HE795105

human

virus

Shamonda virus
NC_018464
vertebrates,invertebrates,
1
Bunyaviridae,Orthobunyavirus,Shamonda
seg. S
HE795107

human

virus

Shamonda virus
NC_018467
vertebrates,invertebrates,
1
Bunyaviridae,Orthobunyavirus,Shamonda
seg. M
HE795106

human

virus

Shokwe virus
NC_001927
vertebrates,invertebrates,
1
Bunyaviridae,Orthobunyavirus,Bunyamwera
seg. S
EU564831

human

virus

Simbu virus
NC_018476
vertebrates,invertebrates,
1
Bunyaviridae,Orthobunyavirus,Simbu virus
seg. L
HE795108

human

Simbu virus
NC_018477
vertebrates,invertebrates,
1
Bunyaviridae,Orthobunyavirus,Simbu virus
seg. S
HE795110

human

Simbu virus
NC_018478
vertebrates,invertebrates,
1
Bunyaviridae,Orthobunyavirus,Simbu virus
seg. M
HE795109

human

Sitiawan virus
NC_015843
vertebrates,invertebrates,
1
Flaviviridae,Flavivirus,Tembusu virus
—
JX477686

human

Snowshoe hare virus
NC_004108
vertebrates,invertebrates,
1
Bunyaviridae,Orthobunyavirus,California
seg. L
EU203678

human

encephalitis virus

Snowshoe hare virus
NC_004109
vertebrates,invertebrates,
2
Bunyaviridae,Orthobunyavirus,California
seg. M
K02539,EU262553

human

encephalitis virus

Snowshoe hare virus
NC_004110
vertebrates,invertebrates,
2
Bunyaviridae,Orthobunyavirus,California
seg. S
EU294510,JQ2390

human

encephalitis virus

South River virus
NC_004109
vertebrates,invertebrates,
1
Bunyaviridae,Orthobunyavirus,California
seg. M
AF123488

human

encephalitis virus

St,Louis encephalitis virus
NC_007580
vertebrates,invertebrates,
9
Flaviviridae,Flavivirus,St,Louis encephalitis
—
JQ957868,FJ753287,

human

virus

FJ753286,JF460774,

DQ359217,JQ957869

,EU566860,AY63254

4,DQ525916

Tahyna virus
NC_004109
vertebrates,invertebrates,
2
Bunyaviridae,Orthobunyavirus,California
seg. M
AF123485,AF229129

human

encephalitis virus

Tahyna virus
NC_004110
vertebrates,invertebrates,
2
Bunyaviridae,Orthobunyavirus,California
seg. S
U47142,Z68497

human

encephalitis virus

Tamana bat virus
NC_003996
vertebrates,invertebrates,
2
Flaviviridae,Flavivirus,Tamana bat virus
—
AF285080,AF346759

human

Tembusu virus
NC_015843
vertebrates,invertebrates,
18
Flaviviridae,Flavivirus,Tembusu virus
—
KF557894,KF192951,

human

JQ595407,JX477685,

JQ314464,JF895923,

KC333867,JX549382,

JX965381,JQ928189,

JN811558,JX273153,

JF270480,JF459991,

JQ314465,KF557893,

KC136210,JN811559

Thogoto virus
NC_006495
vertebrates,invertebrates,
1
Orthomyxoviridae,Thogotovirus,Thogoto virus
seg. 2
AF004985

human

Thogoto virus
NC_006496
vertebrates,invertebrates,
2
Orthomyxoviridae,Thogotovirus,Thogoto virus
seg. 3
AF006073,DQ0540

human

Thogoto virus
NC_006504
vertebrates,invertebrates,
4
Orthomyxoviridae,Thogotovirus,Thogoto virus
seg. 6
AF527531,AF527529,

human

AF236794,AF527530

Thogoto virus
NC_006506
vertebrates,invertebrates,
1
Orthomyxoviridae,Thogotovirus,Thogoto virus
seg. 4
M77280

human

Thogoto virus
NC_006507
vertebrates,invertebrates,
1
Orthomyxoviridae,Thogotovirus,Thogoto virus
seg. 5
X96872

human

Thogoto virus
NC_006508
vertebrates,invertebrates,
1
Orthomyxoviridae,Thogotovirus,Thogoto virus
seg. 1
Y17873

human

Tick-borne encephalitis
NC_001672
vertebrates,invertebrates,
78
Flaviviridae,Flavivirus,Tick-borne encephalitis
—
JQ825149,FJ402886,

virus

human

virus

EU816454,EU816452

,JQ825163,JF316707

,GQ228395,EU81645

3,U27495,KC422663,

EU816451,JQ825160

,FJ572210,GU183383

,KC414090,JQ82515

0,AY169390,AF52741

5,JQ654701,HM1208

75,HM535611,JN229

223,JQ650522,FJ968

751,GU183379,JQ82

5161,AB062064,HQ9

01366,EF469661,EF4

69662,JF316708,FJ4

02885,KC835596,FJ9

06622,JQ825146,GQ

266392,JX534167,FJ

997899,JQ825152,K

C422667,GU121642,

EU816450,L40361,K

C835595,JQ825147,

AB062063,HM859895

,AB753012,JQ825151

,JQ825145,JQ825144

,DQ401140,JQ82514

8,JQ650523,U39292,

JQ825159,GU183381

,KF151173,JQ825164

,HM535610,JQ82516

2,KC835597,JN00320

7,HQ201303,JQ8251

56,JQ825158,AF0690

66,AY182009,JQ8251

53,JQ825157,HM859

894,JQ825154,EU81

6455,U27491,JQ8251

55,GU183380,JF8196

48,HQ901367

Tinaroo virus
NC_009895
vertebrates,invertebrates,
1
Bunyaviridae,Orthobunyavirus,Akabane virus
seg. M
AB208700

human

Tinaroo virus
NC_009896
vertebrates,invertebrates,
1
Bunyaviridae,Orthobunyavirus,Akabane virus
seg. S
AB000819

human

Toscana virus
NC_006318
vertebrates,invertebrates,
9
Bunyaviridae,Phlebovirus,Sandfly fever
seg. S
EU327772,EF120631

human

Naples virus

,EF201833,JF330274

,KC776214,JF330275

,JX867536,FJ153285,

FJ153286

Toscana virus
NC_006319
vertebrates,invertebrates,
2
Bunyaviridae,Phlebovirus,Sandfly fever
seg. L
JX867534,KC776216

human

Naples virus

Toscana virus
NC_006320
vertebrates,invertebrates,
12
Bunyaviridae,Phlebovirus,Sandfly fever
seg. M
JF330280,EU003178,

human

Naples virus

EU003175,EU003179

,EU003180,EU00317

7,EU003174,JF33027

9,EU003176,KC7762

15,EU003173,JX8675

35

Tribec virus
NC_014522
vertebrates,invertebrates,,
2
Reoviridae,Orbivirus,Great Island virus
seg. 1
HQ266581,HM54347

human

8

Tribec virus
NC_014523
vertebrates,invertebrates,
2
Reoviridae,Orbivirus,Great Island virus
seg. 2
HQ266582,HM54347

human

9

Tribec virus
NC_014524
vertebrates,invertebrates,
1
Reoviridae,Orbivirus,Great Island virus
seg. 3
HQ266583

human

Tribec virus
NC_014525
vertebrates,invertebrates,
1
Reoviridae,Orbivirus,Great Island virus
seg. 4
HQ266584

human

Tribec virus
NC_014526
vertebrates,invertebrates,
1
Reoviridae,Orbivirus,Great Island virus
seg. 5
HQ266585

human

Tribec virus
NC_014527
vertebrates,invertebrates,
2
Reoviridae,Orbivirus,Great Island virus
seg. 6
HM543480,HQ26658

human

6

Tribec virus
NC_014528
vertebrates,invertebrates,
1
Reoviridae,Orbivirus,Great Island virus
seg. 7
HQ266587

human

Tribec virus
NC_014529
vertebrates,invertebrates,
1
Reoviridae,Orbivirus,Great Island virus
seg. 8
HQ266588

human

Tribec virus
NC_014530
vertebrates,invertebrates,
1
Reoviridae,Orbivirus,Great Island virus
seg. 9
HQ266589

human

Tribec virus
NC_014531
vertebrates,invertebrates,
1
Reoviridae,Orbivirus,Great Island virus
seg.
HQ266590

human

10

Trivittatus virus
NC_004109
vertebrates,invertebrates,
1
Bunyaviridae,Orthobunyavirus,California
seg. M
AF123491

human

encephalitis virus

Trivittatus virus
NC_004110
vertebrates,invertebrates,
1
Bunyaviridae,Orthobunyavirus,California
seg. S
U12803

human

encephalitis virus

Turuna virus
NC_015373
vertebrates,invertebrates,
1
Bunyaviridae,Phlebovirus,Candiru virus
seg. M
HM119432

human

Turuna virus
NC_015374
vertebrates,invertebrates,
1
Bunyaviridae,Phlebovirus,Candiru virus
seg. L
HM119431

human

Turuna virus
NC_015375
vertebrates,invertebrates,
1
Bunyaviridae,Phlebovirus,Candiru virus
seg. S
HM119433

human

Tyuleniy virus
NC_023424
vertebrates,invertebrates,
1
Flaviviridae,Flavivirus,Tyuleniy virus

KF815939

human

Usutu virus
NC_006551
vertebrates,invertebrates,
10
Flaviviridae,Flavivirus,Usutu virus

KC754957,EF206350

human

,KC754955,JF266698

,KC754958,AY45341

1,AY453412,JQ21984

3,KC754954,KC7549

56

Uukuniemi virus
NC_005214
vertebrates,invertebrates,
1
Bunyaviridae,Phlebovirus,Uukuniemi virus
seg. L
D10759

human

Uukuniemi virus
NC_005220
vertebrates,invertebrates,
1
Bunyaviridae,Phlebovirus,Uukuniemi virus
seg. M
M17417

human

Uukuniemi virus
NC_005221
vertebrates,invertebrates,
1
Bunyaviridae,Phlebovirus,Uukuniemi virus
seg. S
M33551

human

Wesselsbron virus
NC_012735
vertebrates,invertebrates,
2
Flaviviridae,Flavivirus,Wesselsbron virus
—
EU707555,JN226796

human

West Nile virus
NC_001563
vertebrates,invertebrates,
681
Flaviviridae,Flavivirus,West Nile virus
—
JN819317,FJ425721,

human

HQ671721,JN858069

,DQ080059,HQ67169

9,HM488219,JX5030

87,GQ507482,JF899

537,CS568918,JX503

084,HM488220,HM48

8126,DQ080062,DQ4

31701,JF957169,JF9

20749,EU068667,DQ

164187,JQ928174,H

M488211,JF920754,J

F415922,KF647249,J

F957167,HQ671688,

DQ080070,JF957180,

JF357960,JF899530,

KF588365,JF920746,

JF415927,HQ671670,

DQ411030,AF196835

,JF488096,HM48820

1,HQ671673,JF48808

7,HM488165,AF4047

56,GQ379156,JF730

043,HM488173,JF48

8086,HQ671718,HQ6

71720,KC736498,HM

488129,KC736486,M

12294,JF415919,HM

488181,AY262283,JF

920752,HQ671679,JF

920759,KC711059,H

M488132,GQ903680,

KC711057,GQ37915

8,HM756672,JF9571

62,DQ080067,JF9207

33,HM488156,DQ431

712,HM488135,JN81

9311,HM756649,HM4

88160,HQ705670,JF8

99534,JN819319,JF9

57182,JF920307,DQ4

31693,KC736493,HM

756656,JX503092,H

M488235,HM756663,

JN183885,JF415930,

JN819323,JXQ41628,

HM756664,HM75665

1,DQ080069,JF41592

6,JQ700439,HM4881

79,JF957185,KC7364

89,KJ145832,HM488

209,DQ411035,AB18

5916,JXQ15520,HQ6

71722,JF920747,HM

488207,HQ705671,H

M488170,GQ379161,

KC736487,HM48825

0,DQ374653,JF92073

8,JN819320,HQ6716

96,DQ411032,HQ671

700,HM488164,HQ67

1707,HQ671687,GQ5

07473,KC736492,DQ

080065,HQ705674,JF

415918,JX503093,H

M488233,HM488218,

AY795965,HQ671692

,HM488172,DQ37717

8,FJ151394,HM7566

57,AF260967,KC407

673,DQ431694,HQ67

1691,JF415929,HM4

88185,DQ116961,HM

488195,JF488089,JF

957171,HM756677,F

J527738,HQ671702,J

F899532,HM488197,

GQ507484,JF357958

,HM488159,DQ37718

0,HM488144,JQ7004

41,HQ671731,DQ431

708,DQ411031,JF957

176,JN183886,JXQ15

519,HM488131,KF64

7251,HM488230,DQO

80068,HM488232,DO

983578,HM756671,H

M488124,JF415925,

HQ671727,DQ37465

0,KC736501,DQ0800

51,JN819310,AF4047

53,HM488148,JF703

162,HM488134,DQ43

1703,HM756660,HM7

56648,JF730042,JF7

19068,HM488182,JF

415924,JF957184,H

M488163,HQ705675,

AY712945,JF920735,

HM488251,HM48824

5,JF920729,HQ70567

2,JN716371,HM1478

23,JF920739,HM488

189,HM488242,HM48

8246,DQ164204,HQ7

05660,HQ671719,GQ

507472,JF719067,JX

015521,FJ159129,JF

957175,HQ671671,D

0164198,HQ671695,

DQ411034,KC407666

,GQ507470,GQ50747

8,HM488217,HM4881

71,JX123031,HQ671

708,AF206518,HQ67

1681,HM488118,JF9

20731,DQ374652,DQ

164200,HQ671684,E

U081844,JN819305,J

F920744,AY278442,J

XQ15516,JF899536,K

C736495,DQ431702,

HM488137,DQ43171

0,HM488213,AY5326

65,HM488125,JX503

088,HM756654,JF41

5915,HQ705669,JF95

7179,HQ671728,JN8

19307,GQ507477,JN

183887,KC736500,H

0891013,HM488149,

HQ537483,JQ700438

,GQ507481,JF73004

0,AY277252,JF95716

4,HM488123,EF5718

54,HM756668,HQ671

732,JF957186,HM48

8130,AY268132,DQ1

64206,DQ431707,HQ

671677,HM147822,A

F404757,HQ671680,

GU828002,JF920740,

HM756670,EF657887

,JF957168,JXQ41632,

HQ671705,AY701413

,AY660002,GU01199

2,AF404755,HM4882

10,JF784158,HM488

154,HQ671694,JF920

757,HM488150,JX50

3089,CS568919,DQO

80054,JF920750,AY7

12946,AF260969,HM

488192,CS568917,H

M488147,KF179639,

DQ411033,HM48818

3,HQ671689,HM4882

05,HM488252,JF920

745,HQ671711,EF53

0047,GU828000,HQ6

71682,KF647253,HQ

671683,JN183888,H

0671742,JF415920,H

M488157,AY277251,

JF957161,HM488216

,FJ411043,GQ50748

0,JX503094,JF95718

1,HQ891012,HM7566

67,HQ671713,HM488

136,HQ671733,JF488

091,HM488187,HQ67

1674,AB185915,JF48

8093,GQ379159,HQ7

05677,DQ164195,HM

488248,KC736502,D

0164202,JF957165,H

M488184,HQ671730,

JF899533,DQ164186,

JQ700442,HM488228

,DQ176637,AF40475

4,JXQ15522,DQ1766

36,HM488146,AB185

917,KC601756,HM48

8222,HM756675,GU8

28003,HM756665,HM

488151,HM488115,H

0671706,GQ507474,

GU828001,EU249803

,AF533540,JXQ41631

,AF260968,KC73649

0,DQ431699,DQ0800

64,HM488234,DQ164

190,JN183896,HM48

8198,HM488253,JF7

07789,JF920737,HM

488208,JXQ70655,H

Q671717,JN183892,

HQ671693,FJ159131,

HM756652,DQ41102

9,DQ080060,KF1796

40,DQ666449,JX556

213,HQ891010,HM48

8249,HM488119,JN1

83894,HM488204,DO

080052,HM488145,J

0700440,HM488193,

HM488116,HM48817

4,JF920753,DQ08007

2,DQ377179,HM7566

66,GU827999,AY289

214,HM488229,HM48

8186,CS568914,HM7

56661,HM756678,JF

703161,HM488227,H

M756659,AF202541,

EU155484,DQ431695

,HQ671716,AF31720

3,DQ431709,JF92074

1,DQ431697,HM4881

77,HM488221,JX503

099,GQ507475,JXQ1

5523,DQ164194,HQ6

71703,HM488140,HQ

671669,HM488231,D

0164205,FJ159130,H

M488196,DQ164189,

HM488190,JF920748

,HQ671724,JN81931

6,HM488141,JX5030

95,DQ080061,JF9203

06,HQ671698,JN819

309,HM488226,HM48

8247,JF920728,JF89

9529,HM488254,DQ3

18020,JF920758,HM

488202,JF415914,HQ

671678,JF957166,DQ

431706,HQ671685,H

M488127,JF488088,

HM488117,JF488090

,HM488212,KF64725

0,JF357959,JF95717

4,JF920755,GQ5074

79,KC736497,JN1838

97,AY701412,HM488

139,HM488239,DQ08

0056,DQ256376,HM4

88152,JF488095,DQ6

66450,GQ507469,KC

736499,HQ671672,JF

920743,HM488120,D

0164188,JN819321,J

F920734,JXQ15515,D

0164192,JF899535,H

M488180,JN858070,

DQ786573,GU82799

8,JX503090,AY68894

8,JN393308,HQ6717

04,KF234080,JN8193

24,DQ080066,JF9207

42,JF703164,JXQ416

34,AY278441,HM756

662,DQ666452,HM48

8240,HM488199,KC7

36494,DQ786572,JF9

57183,HM756658,HM

488162,JN183889,H

M488155,JF920756,J

F899528,DQ666448,J

N183893,HM488225,

JN819313,HM488169

,GQ379160,HQ67166

8,DQ318019,JF48809

7,HM488167,HM4881

38,HQ671723,CS543

188,JN819315,HM75

6673,HM488153,HQ6

71690,HQ671697,HM

488238,HM488194,F

J483549,JX503091,H

M488158,JF719065,J

F415917,DQ080057,

HQ671729,DQ08005

5,JXQ41629,JX50309

6,DQ374651,HM0514

16,KC407667,DQ431

705,JF957170,JF957

178,JF920751,DQ431

711,HM488121,HM48

8191,HM488215,HQ6

71726,HQ891011,JF7

19069,DQ005530,DQ

164193,GQ507483,H

0671714,JF703163,D

0666451,HM488114,

JF488094,HM488142

,AB185914,HM48823

7,HQ671675,DQ1641

97,GQ507468,JF415

928,HQ671701,JX50

3085,AY765264,HM4

88223,JN183891,JF7

30041,DQ164203,JF9

57173,HM488241,AY

268133,KC736488,H

M488176,HQ671686,

JXQ15518,HM147824

,JF957177,HM48818

8,DQ164201,AY4902

40,KF647252,AY6036

54,HM756676,HM488

200,JF972636,HM48

8243,HM488178,HQ7

05678,CS568916,JN3

67277,HM488166,JF

957172,HQ705676,D

0431700,AY712947,J

0700437,AY712948,J

F415923,DQ080058,J

N819312,JF719066,J

F415916,HM488122,

JN183895,JX503098,

HM488244,JXQ41630

,JX123030,HQ70565

9,GQ507471,HM7566

53,KC736491,DQ164

191,HQ891009,HQ67

1710,JF920732,HM4

88168,JQ928175,DQ

080063,JF415921,DQ

164199,JF899531,HQ

671712,HQ705673,JF

488092,FJ483548,JF

920730,DQ431704,JF

920760,HM488206,D

0164196,HQ671709,

JX503097,JX503086,

AF481864,HQ671676

,JF957163,JXQ15517,

JN819306,HM488133

,GQ379157,HQ67172

5,DQ080053,HM4882

03,KC736496,KF647

248,DQ118127,HM75

6650,KC954092,HM4

88214,HM488175,JN

183890,DQ080071,D

0431696,DQ431698,

GU828004,GQ50747

6,HM488236,HM4882

24,HM488143,HQ671

715,HQ596519,HQ70

5663,JF920736,HM4

88161,AY646354,HM

488128,HM756669,J

N819318

West Nile virus
NC_009942
vertebrates,invertebrates,
681
Flaviviridae,Flavivirus,West Nile virus
—
JN819317,FJ425721,

human

HQ671721,JN858069

,DQ080059,HQ67169

9,HM488219,JX5030

87,GQ507482,JF899

537,CS568918,JX503

084,HM488220,HM48

8126,DQ080062,DQ4

31701,JF957169,JF9

20749,EU068667,DQ

164187,JQ928174,H

M488211,JF920754,J

F415922,KF647249,J

F957167,HQ671688,

DQ080070,JF957180,

JF357960,JF899530,

KF588365,JF920746,

JF415927,HQ671670,

DQ411030,AF196835

,JF488096,HM48820

1,HQ671673,JF48808

7,HM488165,AF4047

56,GQ379156,JF730

043,HM488173,JF48

8086,HQ671718,HQ6

71720,KC736498,HM

488129,KC736486,JF

415919,HM488181,A

Y262283,JF920752,H

0671679,JF920759,K

C711059,HM488132,

GQ903680,KC71105

7,GQ379158,HM7566

72,JF957162,DQ0800

67,JF920733,HM488

156,DQ431712,HM48

8135,JN819311,HM7

56649,HM488160,HQ

705670,JF899534,JN

819319,JF957182,JF

920307,DQ431693,K

C736493,HM756656,

JX503092,HM488235

,HM756663,JN18388

5,JF415930,JN81932

3,JXQ41628,HM7566

64,HM756651,DQ080

069,JF415926,JQ700

439,HM488179,JF95

7185,KC736489,KJ14

5832,HM488209,DQ4

11035,AB185916,JXQ

15520,HQ671722,JF9

20747,HM488207,HQ

705671,HM488170,G

0379161,KC736487,

HM488250,DQ37465

3,JF920738,JN81932

0,HQ671696,DQ4110

32,HQ671700,HM488

164,HQ671707,HQ67

1687,GQ507473,KC7

36492,DQ080065,HQ

705674,JF415918,JX

503093,HM488233,H

M488218,AY795965,

HQ671692,HM48817

2,DQ377178,FJ15139

4,HM756657,AF2609

67,KC407673,DQ431

694,HQ671691,JF415

929,HM488185,DQ11

6961,HM488195,JF4

88089,JF957171,HM

756677,FJ527738,HQ

671702,JF899532,H

M488197,GQ507484,

JF357958,HM488159

,DQ377180,HM48814

4,JQ700441,HQ6717

31,DQ431708,DQ411

031,JF957176,JN183

886,JXQ15519,HM48

8131,KF647251,HM4

88230,DQ080068,HM

488232,DQ983578,H

M756671,HM488124,

JF415925,HQ671727,

DQ374650,KC736501

,DQ080051,JN81931

0,AF404753,HM4881

48,JF703162,HM488

134,DQ431703,HM75

6660,HM756648,JF7

30042,JF719068,HM

488182,JF415924,JF

957184,HM488163,H

0705675,AY712945,J

F920735,HM488251,

HM488245,JF920729

,HQ705672,JN71637

1,HM147823,JF9207

39,HM488189,HM488

242,HM488246,DQ16

4204,HQ705660,HQ6

71719,GQ507472,JF

719067,JXQ15521,FJ

159129,JF957175,HQ

671671,DQ164198,H

0671695,DQ411034,

KC407666,GQ50747

0,GQ507478,HM4882

17,HM488171,JX123

031,HQ671708,AF20

6518,HQ671681,HM4

88118,JF920731,DQ3

74652,DQ164200,HQ

671684,EU081844,JN

819305,JF920744,AY

278442,JXQ15516,JF

899536,KC736495,D

0431702,HM488137,

DQ431710,HM48821

3,AY532665,HM4881

25,JX503088,HM756

654,JF415915,HQ705

669,JF957179,HQ671

728,JN819307,GQ50

7477,JN183887,KC73

6500,HQ891013,HM4

88149,HQ537483,JQ

700438,GQ507481,J

F730040,AY277252,J

F957164,HM488123,

EF571854,HM756668

,HQ671732,JF957186

,HM488130,AY26813

2,DQ164206,DQ4317

07,HQ671677,HM147

822,AF404757,HQ67

1680,GU828002,JF92

0740,HM756670,EF6

57887,JF957168,JXQ

41632,HQ671705,AY

701413,AY660002,G

U011992,AF404755,

HM488210,JF784158

,HM488154,HQ67169

4,JF920757,HM4881

50,JX503089,CS5689

19,DQ080054,JF9207

50,AY712946,AF2609

69,HM488192,CS568

917,HM488147,KF17

9639,DQ411033,HM4

88183,HQ671689,HM

488205,HM488252,J

F920745,HQ671711,

EF530047,GU828000

,HQ671682,KF64725

3,HQ671683,JN1838

88,HQ671742,JF4159

20,HM488157,AY277

251,JF957161,HM48

8216,FJ411043,GQ5

07480,JX503094,JF9

57181,HQ891012,HM

756667,HQ671713,H

M488136,HQ671733,

JF488091,HM488187

,HQ671674,AB18591

5,JF488093,GQ3791

59,HQ705677,DQ164

195,HM488248,KC73

6502,DQ164202,JF95

7165,HM488184,HQ6

71730,JF899533,DQ1

64186,JQ700442,HM

488228,DQ176637,A

F404754,JXQ15522,D

0176636,HM488146,

AB185917,KC601756

,HM488222,HM75667

5,GU828003,HM7566

65,HM488151,HM488

115,HQ671706,GQ50

7474,GU828001,EU2

49803,AF533540,JXQ

41631,AF260968,KC

736490,DQ431699,D

0080064,HM488234,

DQ164190,JN183896

,HM488198,HM48825

3,JF707789,JF92073

7,HM488208,JXQ706

55,HQ671717,JN183

892,HQ671693,FJ159

131,HM756652,DQ41

1029,DQ080060,KF1

79640,DQ666449,JX

556213,HQ891010,H

M488249,HM488119,

JN183894,HM488204

,DQ080052,HM48814

5,JQ700440,HM4881

93,HM488116,HM488

174,JF920753,DQ080

072,DQ377179,HM75

6666,GU827999,AY2

89214,HM488229,HM

488186,CS568914,H

M756661,HM756678,

JF703161,HM488227

,HM756659,AF20254

1,EU155484,DQ4316

95,HQ671716,AF317

203,DQ431709,JF920

741,DQ431697,HM48

8177,HM488221,JX5

03099,GQ507475,JX

015523,DQ164194,H

0671703,HM488140,

HQ671669,HM48823

1,DQ164205,FJ15913

0,HM488196,DQ1641

89,HM488190,JF920

748,HQ671724,JN81

9316,HM488141,JX5

03095,DQ080061,JF9

20306,HQ671698,JN

819309,HM488226,H

M488247,JF920728,J

F899529,HM488254,

DQ318020,JF920758,

HM488202,JF415914

,HQ671678,JF957166

,DQ431706,HQ67168

5,HM488127,JF4880

88,HM488117,JF488

090,HM488212,KF64

7250,JF357959,JF95

7174,JF920755,GQ5

07479,KC736497,JN1

83897,AY701412,HM

488139,HM488239,D

0080056,DQ256376,

HM488152,JF488095

,DQ666450,GQ50746

9,KC736499,HQ6716

72,JF920743,HM488

120,DQ164188,JN81

9321,JF920734,JXQ1

5515,DQ164192,JF89

9535,HM488180,JN8

58070,DQ786573,GU

827998,JX503090,AY

688948,JN393308,H

0671704,KF234080,J

N819324,DQ080066,

JF920742,JF703164,

JXQ41634,AY278441,

HM756662,DQ66645

2,HM488240,HM4881

99,KC736494,DQ786

572,JF957183,HM75

6658,HM488162,JN1

83889,HM488155,JF

920756,JF899528,DO

666448,JN183893,H

M488225,JN819313,

HM488169,GQ37916

0,HQ671668,DQ3180

19,JF488097,HM488

167,HM488138,HQ67

1723,CS543188,JN81

9315,HM756673,HM4

88153,HQ671690,HQ

671697,HM488238,H

M488194,FJ483549,J

X503091,HM488158,

JF719065,JF415917,

DQ080057,HQ67172

9,DQ080055,JXQ416

29,JX503096,DQ374

651,HM051416,KC40

7667,DQ431705,JF95

7170,JF957178,JF92

0751,DQ431711,HM4

88121,HM488191,DQ

211652,HM488215,H

0671726,HQ891011,

JF719069,DQ005530,

DQ164193,GQ50748

3,HQ671714,JF70316

3,DQ666451,HM4881

14,JF488094,HM488

142,AB185914,HM48

8237,HQ671675,DQ1

64197,GQ507468,JF

415928,HQ671701,J

X503085,AY765264,

HM488223,JN183891

,JF730041,DQ164203

,JF957173,HM48824

1,AY268133,KC7364

88,HM488176,HQ671

686,JXQ15518,HM14

7824,JF957177,HM4

88188,DQ164201,AY

490240,KF647252,AY

603654,HM756676,H

M488200,JF972636,

HM488243,HM48817

8,HQ705678,CS5689

16,JN367277,HM488

166,JF957172,HQ705

676,DQ431700,AY71

2947,JQ700437,AY71

2948,JF415923,DQ08

0058,JN819312,JF71

9066,JF415916,HM4

88122,JN183895,JX5

03098,HM488244,JX

041630,JX123030,H

0705659,GQ507471,

HM756653,KC73649

1,DQ164191,HQ8910

09,HQ671710,JF9207

32,HM488168,JQ928

175,DQ080063,JF415

921,DQ164199,JF899

531,HQ671712,HQ70

5673,JF488092,FJ48

3548,JF920730,DQ43

1704,JF920760,HM4

88206,DQ164196,HQ

671709,JX503097,JX

503086,AF481864,H

0671676,JF957163,J

XQ15517,JN819306,H

M488133,GQ379157,

HQ671725,DQ08005

3,HM488203,KC7364

96,KF647248,DQ118

127,HM756650,KC95

4092,HM488214,HM4

88175,JN183890,DQ

080071,DQ431696,D

0431698,GU828004,

GQ507476,HM48823

6,HM488224,HM4881

43,HQ671715,HQ596

519,HQ705663,JF920

736,HM488161,AY64

6354,HM488128,HM7

56669,JN819318

West Nile virus H442
NC_001563
vertebrates,invertebrates,
1
Flaviviridae,Flavivirus,West Nile virus
—
EF429200

human

West Nile virus H442
NC_009942
vertebrates,invertebrates,
1
Flaviviridae,Flavivirus,West Nile virus
—
EF429200

human

West Nile virus SA381/00
NC_001563
vertebrates,invertebrates,
1
Flaviviridae,Flavivirus,West Nile virus
—
EF429199

human

West Nile virus SA381/00
NC_009942
vertebrates,invertebrates,
1
Flaviviridae,Flavivirus,West Nile virus
—
EF429199

human

West Nile virus SA93/01
NC_001563
vertebrates,invertebrates,
1
Flaviviridae,Flavivirus,West Nile virus
—
EF429198

human

West Nile virus SA93/01
NC_009942
vertebrates,invertebrates,
1
Flaviviridae,Flavivirus,West Nile virus
—
EF429198

human

West Nile virus SPU116/89
NC_001563
vertebrates,invertebrates,
1
Flaviviridae,Flavivirus,West Nile virus
—
EF429197

human

West Nile virus SPU116/89
NC_009942
vertebrates,invertebrates,
1
Flaviviridae,Flavivirus,West Nile virus
—
EF429197

human

West Nile virus strain 385-
NC_001563
vertebrates,invertebrates,
5
Flaviviridae,Flavivirus,West Nile virus
—
DQ066423,AY848695

99

human

,AY842931,AY84869

6,AY848697

West Nile virus strain 385-
NC_009942
vertebrates,invertebrates,
5
Flaviviridae,Flavivirus,West Nile virus
—
DQ066423,AY848695

99

human

,AY842931,AY84869

6,AY848697

West Nile virus strain
NC_001563
vertebrates,invertebrates,
1
Flaviviridae,Flavivirus,West Nile virus
—
AJ965628

PT5,2

human

West Nile virus strain
NC_009942
vertebrates,invertebrates,
1
Flaviviridae,Flavivirus,West Nile virus
—
AJ965628

PT5,2

human

West Nile virus strain
NC_001563
vertebrates,invertebrates,
1
Flaviviridae,Flavivirus,West Nile virus
—
AJ965626

PT6,16

human

West Nile virus strain
NC_009942
vertebrates,invertebrates,
1
Flaviviridae,Flavivirus,West Nile virus
—
AJ965626

PT6,16

human

West Nile virus strain
NC_001563
vertebrates,invertebrates,
1
Flaviviridae,Flavivirus,West Nile virus
—
AM404308

PTRoxo

human

West Nile virus strain
NC_009942
vertebrates,invertebrates,
1
Flaviviridae,Flavivirus,West Nile virus
—
AM404308

PTRoxo

human

Yaba-7 virus
NC_009896
vertebrates,invertebrates,
1
Bunyaviridae,Orthobunyavirus,Akabane virus
seg. S
AF362392

human

Yellow fever virus
NC_002031
vertebrates,invertebrates,
61
Flaviviridae,Flavivirus,Yellow fever virus
—
JN811143,JF912190,

human

JF912189,AY968064,

JX898877,JF912186,

U21056,JF912182,JF

912181,JN811142,JF

912179,AY968065,JF

912180,JX898875,JX

898880,JF912183,JX

898870,U17066,JN62

8281,JX898872,DQ1

18157,JX503529,AF0

52439,U21055,JX898

871,JF912188,JF912

187,KF769015,DQ23

5229,JX898868,AF05

2444,JF912184,JX89

8874,JX898879,GQ3

79162,JN811140,JX8

98876,JX898878,AF0

52438,JF912185,JN8

11141,JN628280,AY6

03338,GQ379163,JX

898881,AF052446,D

0100292,X15062,KF

769016,AF052437,AY

640589,XQ3700,JN62

0362,JX898869,U547

98,AF052445,JN6282

79,U17067,AY572535

,JX898873,AF094612

Yellow fever virus
NC_002031
vertebrates,invertebrates,
1
Flaviviridae,Flavivirus,Yellow fever virus
—
FJ654700

17D/Tiantan

human

Yokose virus
NC_005039
vertebrates,invertebrates,
1
Flaviviridae,Flavivirus,Yokose virus
—
AB114858

human

Zaliv Terpenia virus
NC_005214
vertebrates,invertebrates,
1
Bunyaviridae,Phlebovirus,Uukuniemi virus
seg. L
HM566191

human

Zaliv Terpenia virus
NC_005220
vertebrates,invertebrates,
1
Bunyaviridae,Phlebovirus,Uukuniemi virus
seg. M
HM566193

human

Zaliv Terpenia virus
NC_005221
vertebrates,invertebrates,
1
Bunyaviridae,Phlebovirus,Uukuniemi virus
seg. S
HM566192

human

Zika virus
NC_012532
vertebrates,invertebrates,
1
Flaviviridae,Flavivirus,Zika virus
—
AY632535

human

TABLE 11

Percentages of human-mapped reads

S1
S1
S2
S2
S3
S3
S4
S4
S5
S5

Pre-
Post-
Pre-
Post-
Pre-
Post-
Pre-
Post-
Pre-
Post-

capture
capture
capture
capture
capture
capture
capture
capture
capture
capture

chr 1
8.22%
8.29%
7.93%
7.74%
5.56%
6.06%
9.30%
8.40%
8.10%
7.95%

chr 2
8.86%
8.75%
7.17%
8.33%
5.01%
5.22%
7.24%
7.61%
8.35%
8.29%

chr 3
6.64%
6.51%
4.98%
5.42%
4.29%
4.39%
5.84%
5.46%
6.06%
5.89%

chr 4
6.91%
6.83%
5.41%
5.85%
4.00%
4.11%
5.02%
5.23%
5.60%
5.59%

chr 5
6.16%
6.10%
5.60%
5.94%
4.39%
4.47%
5.40%
5.22%
5.64%
5.51%

chr 6
5.81%
5.74%
4.91%
4.81%
3.35%
3.45%
5.40%
5.60%
5.93%
5.70%

chr 7
5.28%
5.25%
4.93%
5.53%
3.18%
3.29%
7.11%
6.20%
5.04%
5.01%

chr 8
5.00%
4.95%
4.26%
4.22%
2.96%
3.03%
4.41%
4.30%
4.57%
4.52%

chr 9
3.89%
3.89%
3.10%
2.94%
2.43%
2.59%
3.52%
3.57%
3.63%
3.67%

chr 10
5.78%
5.76%
5.72%
5.40%
2.95%
3.24%
6.39%
6.48%
8.00%
7.99%

chr 11
4.26%
4.28%
4.72%
3.15%
3.07%
3.14%
3.88%
3.95%
4.40%
4.21%

chr 12
4.11%
4.10%
3.10%
4.02%
2.98%
2.99%
3.42%
3.61%
3.75%
3.78%

chr 13
3.15%
3.05%
2.60%
2.05%
2.54%
2.46%
2.69%
2.47%
2.42%
2.45%

chr 14
2.72%
2.71%
2.50%
2.20%
1.74%
1.74%
4.17%
3.26%
2.65%
2.60%

chr 15
2.20%
2.15%
2.22%
1.92%
1.39%
1.42%
2.87%
2.61%
2.46%
2.38%

chr 16
2.62%
2.70%
3.17%
2.92%
1.66%
1.79%
3.49%
3.94%
4.47%
4.76%

chr 17
1.65%
1.65%
1.69%
2.17%
1.14%
1.21%
2.16%
2.21%
2.35%
2.37%

chr 18
2.95%
2.89%
2.29%
2.20%
1.58%
1.60%
3.51%
3.57%
2.82%
2.74%

chr 19
1.35%
1.49%
2.10%
1.81%
0.74%
0.89%
1.98%
2.23%
1.91%
2.05%

chr 20
1.44%
1.42%
1.69%
1.78%
0.96%
0.95%
1.86%
1.84%
1.91%
1.83%

chr 21
1.20%
1.22%
1.24%
1.37%
0.83%
0.86%
1.09%
1.21%
1.21%
1.28%

chr 22
0.52%
0.53%
0.93%
1.15%
0.43%
0.44%
1.12%
1.08%
0.93%
0.91%

MT
0.22%
0.22%
10.65%
10.07%
27.65%
26.51%
0.79%
0.95%
0.44%
0.37%

X
6.57%
6.68%
2.76%
2.63%
1.87%
2.00%
2.41%
2.61%
2.71%
2.73%

Y
0.27%
0.33%
1.10%
1.52%
0.87%
1.16%
1.62%
2.26%
1.96%
2.36%

S6
S6
S7
S7
S8
S8
P1-14
P1-14

Pre-
Post-
Pre-
Post-
Pre-
Post-
Pre-
Post-

capture
capture
capture
capture
capture
capture
capture
capture

chr 1
7.58%
7.54%
8.37%
8.13%
7.45%
7.80%
8.80%
8.67%

chr 2
8.53%
8.11%
7.76%
8.07%
9.40%
8.89%
8.56%
8.44%

chr 3
7.00%
6.47%
6.04%
5.88%
6.27%
6.42%
6.22%
6.30%

chr 4
5.91%
5.93%
5.72%
5.57%
5.99%
6.12%
6.09%
6.18%

chr 5
5.50%
5.37%
5.19%
5.32%
5.63%
5.93%
5.72%
5.84%

chr 6
6.46%
6.20%
4.82%
4.95%
6.34%
6.43%
5.66%
5.71%

chr 7
4.72%
4.87%
5.62%
5.54%
5.44%
5.36%
5.46%
5.39%

chr 8
4.36%
4.34%
5.16%
4.76%
4.52%
4.80%
4.84%
4.82%

chr 9
3.53%
3.63%
3.80%
3.72%
3.72%
3.89%
3.86%
3.90%

chr 10
7.38%
7.31%
7.02%
6.94%
6.22%
5.46%
6.26%
5.87%

chr 11
4.87%
4.48%
4.43%
4.05%
3.84%
4.23%
4.28%
4.33%

chr 12
3.65%
3.76%
4.74%
4.13%
4.35%
4.45%
4.15%
4.22%

chr 13
2.34%
2.45%
2.49%
2.52%
3.20%
3.26%
2.82%
2.83%

chr 14
2.43%
2.56%
2.35%
2.44%
2.65%
2.84%
2.77%
2.80%

chr 15
2.97%
2.62%
2.50%
2.36%
2.31%
2.55%
2.50%
2.54%

chr 16
4.18%
4.46%
3.57%
3.59%
4.23%
3.64%
3.08%
3.04%

chr 17
2.04%
2.10%
2.01%
2.13%
2.05%
2.28%
2.20%
2.41%

chr 18
2.67%
2.59%
2.75%
2.88%
3.27%
2.98%
2.66%
2.60%

chr 19
1.67%
1.99%
1.89%
2.01%
1.77%
1.82%
2.13%
2.13%

chr 20
2.13%
2.01%
2.22%
1.98%
1.71%
1.92%
1.81%
1.84%

chr 21
1.34%
1.34%
1.08%
1.21%
1.17%
1.24%
1.20%
1.24%

chr 22
0.88%
0.90%
1.02%
1.01%
1.24%
1.28%
0.88%
0.90%

MT
0.42%
0.49%
1.87%
2.10%
0.29%
0.32%
0.43%
0.42%

X
2.49%
2.70%
2.50%
2.68%
2.46%
2.72%
4.55%
4.62%

Y
2.33%
2.86%
2.00%
2.79%
2.17%
1.68%
0.82%
0.94%

Number	Name	Date	Kind
6566495	Fodor et al.	May 2003	B1
10597736	Storch	Mar 2020	B2
20010053519	Fodor	Dec 2001	A1
20050244851	Blume	Nov 2005	A1
20060210967	Agan	Sep 2006	A1
20070092871	Lodes	Apr 2007	A1
20080003565	Baptista	Jan 2008	A1
20120164644	Neely et al.	Jun 2012	A1
20170218465	Storch et al.	Aug 2017	A1

	Number	Date	Country
Parent	15418207	Jan 2017	US
Child	16752205		US

Compositions and methods for detecting viruses in a sample

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Entry
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