Patent Application
20210253614
The immune system plays a critical role in the identification and elimination of neoplastic cells. Tumor cells use various mechanisms for evading the immune-mediated destruction of tumor cells. Among those pathways, adenosine has been identified as a highly effective inhibitor of effector T cell function, and the enzyme CD73 (ecto-5′-nucleotidase, NT5E) has been identified as the enzyme responsible for generating adenosine.
As tumor cells undergo cell death as a result of metabolic or hypoxic stress, they release intracellular stores of ATP into the extracellular space. CD39 and CD73 are two ecto-enzymes that work together in a two-step reaction to convert pro-inflammatory ATP into immunosuppressive adenosine. CD39 hydrolyzes ATP into AMP, which is further hydrolyzed by CD73 into adenosine. Adenosine binds A2A receptors on T cells and activates an intracellular signaling cascade leading to the suppression of T cell activation and function. Activation of A2A receptors inhibits IFNg production, as well as cytotoxic killing by CD8+ cells, and also promotes the differentiation of CD4+ cells into T-regulatory cells (Jin, et al. (2010) Cancer Res. 70:2245-55). Adenosine can also inhibit differentiation and function of dendritic cells, as well as proliferation and cytolytic function of NK cells (Hoskin, et. al. (2008) Int J Oncol 32:527-35). Activation of A2A receptors on tumor cells has also been suggested to promote tumor cell metastasis (Beavis et al. (2013) Proc Natl Acad Sci USA 110:14711-14716).
CD73 is expressed primarily in endothelial cells and a subset of hematopoietic cells. CD73 expression has been observed in tumor cells in leukemia, bladder cancer, glioma, glioblastoma, lung cancer, ovarian cancer, melanoma, prostate cancer, thyroid cancer, esophageal cancer and breast cancer. CD73 expression in non-small-cell lung cancer and triple-negative breast cancer is a prognostic marker for lower survival rate (Inoue, et al. (2017) Oncotarget 5:8738-8751; and Loi, et al. (2013) Proc Natl Acad Sci USA 110:11091-11096). In the mouse, knock-down using siRNA or overexpression of CD73 on mouse tumor cells can modulate tumor growth and metastasis (Beavis et al. (2013) Proc Natl Acad Sci USA 110:14711-14716; Stagg et al. (2010) Cancer Res. 71:2892-2900; and Jin et al. (2010) Cancer Res. 70: 2245-55). CD73 plays a key role in promoting tumor growth in the tumor microenvironment, as CD73−/− mice are protected from transplanted and spontaneous tumors (Stagg et al. (2010) Cancer Res. 71:2892-2900). Inhibition of CD73 has been proposed as a therapeutic approach for the treatment of cancer, and antibodies to CD73 have been reported to inhibit tumor growth by restoring immune response to the tumors (Hay, et al. (2016) Oncoimmunology; 5(8):e1208875).
A better understanding of the complex interactions between the immune system and tumors has allowed for the identification of key molecules that govern the tumor immune evasion. These findings have revitalized interest in cancer immunotherapeutics designed to overcome these checkpoint mechanisms. There is a need in the art for novel CD73 small molecule inhibitors. The present disclosure addresses this need by providing CD73 inhibitors as described herein.
In certain aspects, the present disclosure provides a compound of Formula (I):
or a pharmaceutically acceptable salt thereof, wherein:
In some embodiments, for a compound of Formula (I), R15 is selected from —NR1R2; and C3-12 membered carbocycle and 3- to 12-membered heterocycle, each of which is optionally substituted with one or more R7. In some embodiments, R15 is —NR1R2, such as R15 is selected from
each of which is optionally substituted with one or more R7. In some embodiments, R1 and R2 are taken together with the nitrogen atom to which they are attached to form a 3- to 12-membered heterocycle, optionally substituted with one or more R7. In some embodiments, R1 and R2 are taken together with the nitrogen atom to which they are attached to form a 3- to 12-membered heterocycle, optionally substituted with one or more substituents independently selected from halogen, —CN, C1-4 alkyl, C1-3 haloalkyl, —OH and —NH2. In some embodiments, R1 and R2 are taken together with the nitrogen atom to which they are attached to form optionally substituted 3- to 7-membered monocyclic heterocycloalkyl or optionally substituted 5- to 12-membered fused bicyclic heterocycloalkyl. In some embodiments, R2 is selected from C1-6 alkyl, C3-12 carbocycle, 3- to 12-membered heterocycle and benzyl, each of which is optionally substituted with one or more substituents independently selected from halogen, —CN, C1-4 alkyl, C1-3 haloalkyl, —OH and —NH2. In some embodiments, R2 is benzyl, optionally substituted with one or more R7. In some embodiments, R2 is benzyl, optionally substituted with one or more substituents independently selected from halogen, —CN, C1-4 alkyl, C1-3 haloalkyl, —OH and —NH2. In some embodiments, R1 and R2 are taken together with the nitrogen atom to which they are attached to form a 3- to 12-membered heterocycle, substituted with one or more substituents selected from halogen, optionally wherein said halogen is fluorine. In some embodiments, R2 is selected from C3-12 carbocycle and 3- to 12-membered heterocycle, each of which is substituted with one or more substituents selected from halogen, optionally wherein said halogen is fluorine.
In some embodiments, for a compound of Formula (I), R15 is substituted with one or more substituents selected from halogen, optionally wherein said halogen is fluorine. In some embodiments, R15 is selected from
In some embodiments, R15 is selected from
In certain aspects, the present disclosure provides a compound of Formula (I-A) or (I-B):
or a pharmaceutically acceptable salt thereof, wherein:
In some embodiments, for a compound of Formula (I-A) or (I-B), R11 is C1-4 alkyl. In some embodiments, R11 is selected from methyl, ethyl, iso-propyl and tert-butyl. In some embodiments, R11 is selected from C1-4 alkyl and C3-12 cycloalkyl, each of which is optionally substituted with one or more R7.
In some embodiments, for a compound of Formula (I-A) or (I-B), R12 is independently selected at each occurrence from halogen, —CN, C1-4 alkoxy, C1-4 haloalkoxy, C1-4 alkyl and C1-4 haloalkyl. In some embodiments, R12 is independently selected at each occurrence from halogen, —CN, C1-4 alkyl and C1-4 haloalkyl. In some embodiments, R12 is independently selected at each occurrence from F, —CN, —CH3 and —CF3. In some embodiments, n is an integer from 1 to 4.
In certain aspects, the present disclosure provides a compound of Formula (I-C):
or a pharmaceutically acceptable salt thereof, wherein:
In some embodiments, for a compound of Formula (I-C), Z is selected from C3-12 monocyclic cycloalkyl or C5-12 fused bicyclic cycloalkyl, each of which is optionally substituted with one or more R7. In some embodiments, Z is C5-12 fused bicyclic cycloalkyl, optionally substituted with one or more R7. In some embodiments, Z is substituted with one or more substituents independently selected from halogen, —CN, C1-4 alkyl and C1-3 haloalkyl. In some embodiments, Z is substituted with one or more substituents selected from fluorine.
In some embodiments, for a compound of Formula (I), (I-A), (I-B) or (I-C), R1 is selected from hydrogen and —CH3. In some embodiments, W3 is N and W4 is C. In some embodiments, W5 is N and W4 is C. In some embodiments, W6 and W1 are each independently CR6.
In some embodiments, for a compound of Formula (I), (I-A), (I-B) or (I-C), R13 is hydrogen and R17 is —OH. In some embodiments, R13 is fluorine and R17 is hydrogen. In some embodiments, R14 is selected from hydrogen and phenyl. In some embodiments, R14 is selected from —CH2OH, —N3 and NR8C(═O)R8.
In some embodiments, for a compound of Formula (I), (I-A), (I-B) or (I-C), A is —O—. In some embodiments, A is selected from —S—, —S(═O)— and —S(═O)2—. In some embodiments, A is —S(═O)2—. In some embodiments, A is —OP(═O)(OH)—.
In some embodiments, for a compound of Formula (I), (I-A), (I-B) or (I-C), R3 is selected from halogen, —CN, —N(R8)2 and —R8. In some embodiments, R3 is selected from halogen and —CN. In some embodiments, R3 is selected from —Cl and —CN. In some embodiments, R3 is selected from halogen. In some embodiments, R3 is selected from —Cl.
In some embodiments, for a compound of Formula (I), (I-A), (I-B) or (I-C), R16 is —CN. In some embodiments, R3 is —Cl and R16 is —CN; or R3 is —CN and R16 is —Cl. In some embodiments, R3 is —Cl and R16 is —CN. In some embodiments, R3 is —CN and R16 is —Cl.
In some embodiments, for a compound of Formula (I), (I-A), (I-B) or (I-C), at least one of R4 and R5 is C1-6 alkyl, optionally substituted at each occurrence with one or more substituents selected from halogen, —Ole, —S—C(═O)R8, —OC(═O)R8, —OC(═O)OR8 and —P(═O)(OR8)2. In some embodiments, R4 and R5 are independently selected from C1-6 alkyl, optionally substituted at each occurrence with one or more substituents selected from halogen, —OR8, —S—S—R8, —S—C(═O)R8, —OC(═O)R8, —OC(═O)OR8 and —P(═O)(OR8)2. In some embodiments, R4 and R5 are independently selected from hydrogen and C1-6 alkyl, wherein the C1-6 alkyl is optionally substituted at each occurrence with one or more substituents selected from halogen, —OR8, —S—S—R8, —S—C(═O)R8, —OC(═O)R8, —OC(═O)OR8 and —P(═O)(OR8)2. In some embodiments, R4 and R5 are independently selected from —CH2OC(═O)R8 and —CH2OC(═O)OR8. In some embodiments, one of R4 and R5 is phenyl. In some embodiments, R4 and R5 are independently selected from CH2OC(═O)C(CH3)3, CH2OC(═O)OCH(CH3)2, CH2OC(═O)CH3, CH2CH2—S—S—(CH2)2OH and CH2CH2—S—C(═O)CH3.
In some embodiments, for a compound of Formula (I), (I-A), (I-B) or (I-C), R4 is
wherein R18 is selected from C1-6 alkyl and C3-12 carbocycle, each of which is optionally substituted with one or more R7, or R11 is optionally taken together with R5 to form a 4- to 6-membered heterocycle; and m is 0, 1 or 2. In some embodiments, R4 is
In some embodiments, R4 is taken together with Oa to form a 3- to 20-membered heterocycle, optionally substituted with one or more R7.
In some embodiments, a compound of Formula (I) is represented by Formula (I-D):
In some embodiments, a compound of Formula (I) is represented by Formula (I-E):
wherein W is —(OCH2OC(═O))l; l is an integer from 0 to 5; and R19 is selected from hydrogen and R7.
In some embodiments, for a compound of Formula (I), (I-A), (I-B), (I-C), (I-D) or (I-E), R4 is phenyl, optionally substituted with OR8; R5 is C1-6 alkyl substituted with one or more substituents selected from —OC(═O)R8, —C(═O)OR8, and —OC(═O)OR8; and R8 is C1-6 alkyl.
In some embodiments, for a compound of Formula (I), (I-A), (I-B), (I-C), (I-D) or (I-E), X and Y are each —O—. In some embodiments, X and Y are each —O—; and R4 and R5 are independently selected from —OC(═O)R8, —OC(═O)OR8, —OC(═O)OR8OC(═O)R8, —OC(═O)OR8OC(═O)OR8, and —OC(═O)OR8OC(═O)R8OC(═O)R8, or R4 and R5 are taken together with the atoms to which they are attached to form a C3-20 carbocycle or 3- to 20-membered heterocycle, each of which is optionally substituted with one or more R7. In some embodiments, one of X and Y is —O— and the other one of X and Y is —NR8—. In some embodiments, —X—R4 and —Y—R5 are each —OH.
In some embodiments, for a compound of Formula (I), (I-A), (I-B), (I-C), (I-D) or (I-E), W1 is selected from N and CR6; W3 is N; W4 is C; W5 is N; W6 is CH; R3 is selected from halogen and —CN; and R16 is selected from halogen, —CN and C1-4 alkyl.
In certain aspects, the present disclosure provides a substantially pure stereoisomer of a compound of Formula (I), (I-A), (I-B), (I-C), (I-D), (I-E), (II), (III), (III-A), (III-B), (III-C), (IV), (IV-A), (IV-B) or (IV-C). In some embodiments, the stereoisomer is provided in at least 90% diastereomeric excess.
In certain aspects, the present disclosure provides a compound selected from Table 1.
In certain aspects, the present disclosure provides a pharmaceutical composition comprising a compound or salt described herein, such as a compound of Formula (I), (I-A), (I-B), (I-C), (I-D), (I-E), (II), (III), (III-A), (III-B), (III-C), (IV), (IV-A), (IV-B) or (IV-C) and a pharmaceutically acceptable carrier or diluent.
In certain aspects, the present disclosure provides a method of inhibiting CD73-catalyzed hydrolysis of adenosine monophosphate, comprising contacting CD73 with an effective amount of a compound described herein, such as a compound of Formula (I), (I-A), (I-B), (I-C), (I-D), (I-E), (II), (III), (III-A), (III-B), (III-C), (IV), (IV-A), (IV-B) or (IV-C). The contacting may comprise contacting a cell that expresses CD73. The contacting may take place in vivo.
In certain aspects, the present disclosure provides a method of treating cancer in a subject in need thereof, comprising administering to the subject an effective amount of a compound of any one of Formula (I), (I-A), (I-B), (I-C), (I-D), (I-E), (II), (III), (III-A), (III-B), (III-C), (IV), (IV-A), (IV-B), (IV-C), or Table 1 in combination with an immunotherapeutic agent. In some embodiments, the immunotherapeutic agent is a PD-1 inhibitor, a PD-L1 inhibitor or a CTLA-4 inhibitor. In a further embodiment, the immunotherapeutic agent is selected from nivolumab, pembrolizumab, tremelimumab and ipilimumab.
All publications, patents and patent applications mentioned in this specification are herein incorporated by reference to the same extent as if each individual publication, patent or patent application was specifically and individually indicated to be incorporated by reference.
While preferred embodiments of the present invention have been shown and described herein, it will be obvious to those skilled in the art that such embodiments are provided by way of example only. Numerous variations, changes and substitutions will now occur to those skilled in the art without departing from the invention. It should be understood that various alternatives to the embodiments of the invention described herein may be employed in practicing the invention. It is intended that the appended claims define the scope of the invention and that methods and structures within the scope of these claims and their equivalents be covered thereby.
Unless defined otherwise, all technical and scientific terms used herein have the same meaning as is commonly understood by one of skill in the art to which this invention belongs.
As used in the specification and claims, the singular form “a”, “an” and “the” include plural references unless the context clearly dictates otherwise.
The term “Cx-y” or “Cx-Cy” when used in conjunction with a chemical moiety, such as alkyl, alkenyl, or alkynyl is meant to include groups that contain from x to y carbons in the chain. For example, the term “Cx-y alkyl” refers to substituted or unsubstituted saturated hydrocarbon groups, including straight-chain alkyl and branched-chain alkyl groups that contain from x to y carbons in the chain.
“Alkyl” refers to substituted or unsubstituted saturated hydrocarbon groups, including straight-chain alkyl and branched-chain alkyl groups. An alkyl group may contain from one to twelve carbon atoms (e.g., C1-12 alkyl), such as one to eight carbon atoms (C1-8 alkyl) or one to six carbon atoms (C1-6 alkyl). Exemplary alkyl groups include methyl, ethyl, n-propyl, isopropyl, n-butyl, isobutyl, sec-butyl, tert-butyl, pentyl, isopentyl, neopentyl, hexyl, septyl, octyl, nonyl, and decyl. An alkyl group is attached to the rest of the molecule by a single bond. Unless stated otherwise specifically in the specification, an alkyl group is optionally substituted by one or more substituents such as those substituents described herein.
“Haloalkyl” refers to an alkyl group that is substituted by one or more halogens. Exemplary haloalkyl groups include trifluoromethyl, difluoromethyl, trichloromethyl, 2,2,2-trifluoroethyl, 1,2-difluoroethyl, 3-bromo-2-fluoropropyl, and 1,2-dibromoethyl.
“Alkenyl” refers to substituted or unsubstituted hydrocarbon groups, including straight-chain or branched-chain alkenyl groups containing at least one double bond. An alkenyl group may contain from two to twelve carbon atoms (e.g., C2-12 alkenyl). Exemplary alkenyl groups include ethenyl (i.e., vinyl), prop-1-enyl, but-1-enyl, pent-1-enyl, penta-1,4-dienyl, and the like. Unless stated otherwise specifically in the specification, an alkenyl group is optionally substituted by one or more substituents such as those substituents described herein.
“Alkynyl” refers to substituted or unsubstituted hydrocarbon groups, including straight-chain or branched-chain alkynyl groups containing at least one triple bond. An alkynyl group may contain from two to twelve carbon atoms (e.g., C2-12 alkynyl). Exemplary alkynyl groups include ethynyl, propynyl, butynyl, pentynyl, hexynyl, and the like. Unless stated otherwise specifically in the specification, an alkynyl group is optionally substituted by one or more substituents such as those substituents described herein.
“Alkylene” or “alkylene chain” refers to substituted or unsubstituted divalent saturated hydrocarbon groups, including straight-chain alkylene and branched-chain alkylene groups that contain from one to twelve carbon atoms. Exemplary alkylene groups include methylene, ethylene, propylene, and n-butylene. Similarly, “alkenylene” and “alkynylene” refer to alkylene groups, as defined above, which comprise one or more carbon-carbon double or triple bonds, respectively. The points of attachment of the alkylene, alkenylene or alkynylene chain to the rest of the molecule can be through one carbon or any two carbons within the chain. Unless stated otherwise specifically in the specification, an alkylene, alkenylene, or alkynylene group is optionally substituted by one or more substituents such as those substituents described herein.
“Heteroalkyl”, “heteroalkenyl” and “heteroalkynyl” refer to substituted or unsubstituted alkyl, alkenyl and alkynyl groups which respectively have one or more skeletal chain atoms selected from an atom other than carbon, e.g., 0, N, P, Si, S or combinations thereof, and wherein the nitrogen, phosphorus, and sulfur atoms may optionally be oxidized and the nitrogen heteroatom may optionally be quaternized. If given, a numerical range refers to the chain length in total. For example, a 3- to 8-membered heteroalkyl has a chain length of 3 to 8 atoms. Connection to the rest of the molecule may be through either a heteroatom or a carbon in the heteroalkyl, heteroalkenyl or heteroalkynyl chain. Unless stated otherwise specifically in the specification, a heteroalkyl, heteroalkenyl, or heteroalkynyl group is optionally substituted by one or more substituents such as those substituents described herein.
“Heteroalkylene”, “heteroalkenylene” and “heteroalkynylene” refer to substituted or unsubstituted alkylene, alkenylene and alkynylene groups which respectively have one or more skeletal chain atoms selected from an atom other than carbon, e.g., 0, N, P, Si, S or combinations thereof, and wherein the nitrogen, phosphorus, and sulfur atoms may optionally be oxidized and the nitrogen heteroatom may optionally be quaternized. The points of attachment of the heteroalkylene, heteroalkenylene or heteroalkynylene chain to the rest of the molecule can be through either one heteroatom or one carbon, or any two heteroatoms, any two carbons, or any one heteroatom and any one carbon in the heteroalkyl, heteroalkenyl or heteroalkynyl chain. Unless stated otherwise specifically in the specification, a heteroalkylene, heteroalkenylene, or heteroalkynylene group is optionally substituted by one or more substituents such as those substituents described herein.
“Carbocycle” refers to a saturated, unsaturated or aromatic ring in which each atom of the ring is a carbon atom. Carbocycle may include 3- to 10-membered monocyclic rings, 6- to 12-membered bicyclic rings, and 6- to 12-membered bridged rings. Each ring of a bicyclic carbocycle may be selected from saturated, unsaturated, and aromatic rings. In some embodiments, the carbocycle is an aryl. In some embodiments, the carbocycle is a cycloalkyl. In some embodiments, the carbocycle is a cycloalkenyl. In an exemplary embodiment, an aromatic ring, e.g., phenyl, may be fused to a saturated or unsaturated ring, e.g., cyclohexane, cyclopentane, or cyclohexene. Any combination of saturated, unsaturated and aromatic bicyclic rings, as valence permits, are included in the definition of carbocyclic. Exemplary carbocycles include cyclopentyl, cyclohexyl, cyclohexenyl, adamantyl, phenyl, indanyl, and naphthyl. Unless stated otherwise specifically in the specification, a carbocycle is optionally substituted by one or more substituents such as those substituents described herein.
“Heterocycle” refers to a saturated, unsaturated or aromatic ring comprising one or more heteroatoms. Exemplary heteroatoms include N, O, Si, P, B, and S atoms. Heterocycles include 3- to 10-membered monocyclic rings, 6- to 12-membered bicyclic rings, and 6- to 12-membered bridged rings. Each ring of a bicyclic heterocycle may be selected from saturated, unsaturated, and aromatic rings. The heterocycle may be attached to the rest of the molecule through any atom of the heterocycle, valence permitting, such as a carbon or nitrogen atom of the heterocycle. In some embodiments, the heterocycle is a heteroaryl. In some embodiments, the heterocycle is a heterocycloalkyl. In an exemplary embodiment, a heterocycle, e.g., pyridyl, may be fused to a saturated or unsaturated ring, e.g., cyclohexane, cyclopentane, or cyclohexene. Exemplary heterocycles include pyrrolidinyl, pyrrolyl, imidazolyl, pyrazolyl, triazolyl, piperidinyl, pyridinyl, pyrimidinyl, pyridazinyl, pyrazinyl, thiophenyl, oxazolyl, thiazolyl, morpholinyl, indazolyl, indolyl, and quinolinyl. Unless stated otherwise specifically in the specification, a heterocycle is optionally substituted by one or more substituents such as those substituents described herein.
“Heteroaryl” refers to a 3- to 12-membered aromatic ring that comprises at least one heteroatom wherein each heteroatom may be independently selected from N, O, and S. As used herein, the heteroaryl ring may be selected from monocyclic or bicyclic and fused or bridged ring systems wherein at least one of the rings in the ring system is aromatic, i.e., it contains a cyclic, delocalized (4n+2) π-celectron system in accordance with the Hückel theory. The heteroatom(s) in the heteroaryl may be optionally oxidized. One or more nitrogen atoms, if present, are optionally quaternized. The heteroaryl may be attached to the rest of the molecule through any atom of the heteroaryl, valence permitting, such as a carbon or nitrogen atom of the heteroaryl. Examples of heteroaryls include, but are not limited to, azepinyl, acridinyl, benzimidazolyl, benzindolyl, 1,3-benzodioxolyl, benzofuranyl, benzooxazolyl, benzo[d]thiazolyl, benzothiadiazolyl, benzo[b][1,4]dioxepinyl, benzo[b][1,4]oxazinyl, 1,4-benzodioxanyl, benzonaphthofuranyl, benzoxazolyl, benzodioxolyl, benzodioxinyl, benzopyranyl, benzopyranonyl, benzofuranyl, benzofuranonyl, benzothienyl (benzothiophenyl), benzothieno[3,2-d]pyrimidinyl, benzotriazolyl, benzo[4,6]imidazo[1,2-a]pyridinyl, carbazolyl, cinnolinyl, cyclopenta[d]pyrimidinyl, 6,7-dihydro-5H-cyclopenta[4,5]thieno[2,3-d]pyrimidinyl, 5,6-dihydrobenzo[h]quinazolinyl, 5,6-dihydrobenzo[h]cinnolinyl, 6,7-dihydro-5H-benzo[6,7]cyclohepta[1,2-c]pyridazinyl, dibenzofuranyl, dibenzothiophenyl, furanyl, furanonyl, furo[3,2-c]pyridinyl, 5,6,7,8,9,10-hexahydrocycloocta[d]pyrimidinyl, 5,6,7,8,9,10-hexahydrocycloocta[d]pyridazinyl, 5,6,7,8,9,10-hexahydrocycloocta[d]pyridinyl, isothiazolyl, imidazolyl, indazolyl, indolyl, indazolyl, isoindolyl, indolinyl, isoindolinyl, isoquinolyl, indolizinyl, isoxazolyl, 5,8-methano-5,6,7,8-tetrahydroquinazolinyl, naphthyridinyl, 1,6-naphthyridinonyl, oxadiazolyl, 2-oxoazepinyl, oxazolyl, oxiranyl, 5,6,6a,7,8,9,10,10a-octahydrobenzo[h]quinazolinyl, 1-phenyl-1H-pyrrolyl, phenazinyl, phenothiazinyl, phenoxazinyl, phthalazinyl, pteridinyl, purinyl, pyrrolyl, pyrazolyl, pyrazolo[3,4-d]pyrimidinyl, pyridinyl, pyrido[3,2-d]pyrimidinyl, pyrido[3,4-d]pyrimidinyl, pyrazinyl, pyrimidinyl, pyridazinyl, pyrrolyl, quinazolinyl, quinoxalinyl, quinolinyl, isoquinolinyl, tetrahydroquinolinyl, 5,6,7,8-tetrahydroquinazolinyl, 5,6,7,8-tetrahydrobenzo[4,5]thieno[2,3-d]pyrimidinyl, 6,7,8,9-tetrahydro-5H-cyclohepta[4,5]thieno[2,3-d]pyrimidinyl, 5,6,7,8-tetrahydropyrido[4,5-c]pyridazinyl, thiazolyl, thiadiazolyl, triazolyl, tetrazolyl, triazinyl, thieno[2,3-d]pyrimidinyl, thieno[3,2-d]pyrimidinyl, thieno[2,3-c]pridinyl, and thiophenyl (i.e. thienyl). Unless stated otherwise specifically in the specification, a heteroaryl is optionally substituted by one or more substituents such as those substituents described herein.
The term “substituted” refers to moieties having substituents replacing a hydrogen on one or more carbons or heteroatoms of the structure. It will be understood that “substitution” or “substituted with” includes the implicit proviso that such substitution is in accordance with permitted valence of the substituted atom and the substituent, and that the substitution results in a stable compound, e.g., which does not spontaneously undergo transformation such as by rearrangement, cyclization, elimination, etc. As used herein, the term “substituted” is contemplated to include all permissible substituents of organic compounds. In a broad aspect, the permissible substituents include acyclic and cyclic, branched and unbranched, carbocyclic and heterocyclic, aromatic and non-aromatic substituents of organic compounds. The permissible substituents can be one or more and the same or different for appropriate organic compounds. For purposes of this disclosure, the heteroatoms such as nitrogen may have hydrogen substituents and/or any permissible substituents of organic compounds described herein which satisfy the valences of the heteroatoms. Substituents can include any substituents described herein, for example, a halogen, a hydroxyl, a carbonyl (such as a carboxyl, an alkoxycarbonyl, a formyl, or an acyl), a thiocarbonyl (such as a thioester, a thioacetate, or a thioformate), an alkoxyl, a phosphoryl, a phosphate, a phosphonate, a phosphinate, an amino, an amido, an amidine, an imine, a cyano, a nitro, an azido, a sulfhydryl, an alkylthio, a sulfate, a sulfonate, a sulfamoyl, a sulfonamido, a sulfonyl, a heterocyclyl, an aralkyl, a carbocycle, a heterocycle, a cycloalkyl, a heterocycloalkyl, an aromatic and heteroaromatic moiety. In some embodiments, substituents may include any substituents described herein, for example: halogen, hydroxy, oxo (═O), thioxo (═S), cyano (—CN), nitro (—NO2), imino (═N—H), oximo (═N—OH), hydrazino (═N—NH2), —Rb—ORa, —Rb—OC(O)—Ra, —Rb—OC(═O)—ORa, —Rb—OC(═O)—N(Ra)2, —Rb—N(Ra)2, —Rb—C(═O)Ra, —Rb—C(═O)ORa, —Rb—C(═O)N(Ra)2, —Rb—O—Rc—C(═O)N(Ra)2, —Rb—N(Ra)C(═O)ORa, —Rb—N(Ra)C(═O)Ra, —Rb—N(Ra)S(═O)tRa (where t is 1 or 2), —Rb—S(═O)tRa (where t is 1 or 2), —Rb—S(═O)tORa (where t is 1 or 2), and —Rb—S(═O)tN(Ra)2 (where t is 1 or 2); and alkyl, alkenyl, alkynyl, aryl, aralkyl, aralkenyl, aralkynyl, cycloalkyl, cycloalkylalkyl, heterocycloalkyl, heterocycloalkylalkyl, heteroaryl, and heteroarylalkyl any of which may be optionally substituted by alkyl, alkenyl, alkynyl, halogen, hydroxy, haloalkyl, haloalkenyl, haloalkynyl, oxo (═O), thioxo (═S), cyano (—CN), nitro (—NO2), imino (═N—H), oximo (═N—OH), hydrazine (═N—NH2), —Rb—ORa, —Rb—OC(═O)—Ra, —Rb—OC(═O)—ORa, —Rb—OC(═O)—N(Ra)2, —Rb—N(Ra)2, —Rb—C(═O)Ra, —Rb—C(═O)ORa, —Rb—C(O)N(Ra)2, —Rb—O—Rc—C(═O)N(Ra)2, —Rb—N(Ra)C(═O)ORa, —Rb—N(Ra)C(═O)Ra, —Rb—N(Ra)S(═O)tRa (where t is 1 or 2), —Rb—S(═O)tRa (where t is 1 or 2), —Rb—S(═O)tORa (where t is 1 or 2) and —Rb—S(O)tN(Ra)2 (where t is 1 or 2); wherein each Ra is independently selected from hydrogen, alkyl, cycloalkyl, cycloalkylalkyl, aryl, aralkyl, heterocycloalkyl, heterocycloalkylalkyl, heteroaryl, or heteroarylalkyl, wherein each Ra, valence permitting, may be optionally substituted with alkyl, alkenyl, alkynyl, halogen, haloalkyl, haloalkenyl, haloalkynyl, oxo (═O), thioxo (═S), cyano (—CN), nitro (—NO2), imino (═N—H), oximo (═N—OH), hydrazine (═N—NH2), —Rb—ORa, —Rb—OC(═O)—Ra, —Rb—OC(═O)—ORa, —Rb—OC(═O)—N(Ra)2, —Rb—N(Ra)2, —Rb—C(═O)Ra, —Rb—C(═O)ORa, —Rb—C(═O)N(Ra)2, —Rb—O—Rc—C(═O)N(Ra)2, —Rb—N(Ra)C(═O)ORa, —Rb—N(Ra)C(═O)Ra, —Rb—N(Ra)S(═O)tRa (where t is 1 or 2), —Rb—S(═O)tRa (where t is 1 or 2), —Rb—S(O)tORa (where t is 1 or 2) and —Rb—S(═O)tN(Ra)2 (where t is 1 or 2); and wherein each Rb is independently selected from a direct bond or a straight or branched alkylene, alkenylene, or alkynylene chain, and each Rc is a straight or branched alkylene, alkenylene or alkynylene chain. In some embodiments, a substituent is selected from R7 as defined herein below.
It will be understood by those skilled in the art that substituents can themselves be substituted, if appropriate. Unless specifically stated as “unsubstituted,” references to chemical moieties herein are understood to include substituted variants. For example, reference to a “heteroaryl” group or moiety implicitly includes both substituted and unsubstituted variants.
Where substituent groups are specified by their conventional chemical formulae, written from left to right, they equally encompass the chemically identical substituents that would result from writing the structure from right to left, e.g., —CH2O— is equivalent to —OCH2—.
“Optional” or “optionally” means that the subsequently described event of circumstances may or may not occur, and that the description includes instances where the event or circumstance occurs and instances in which it does not. For example, “optionally substituted aryl” means that the aryl group may or may not be substituted and that the description includes both substituted aryl groups and aryl groups having no substitution.
Compounds of the present disclosure also include crystalline and amorphous forms of those compounds, pharmaceutically acceptable salts, and active metabolites of these compounds having the same type of activity, including, for example, polymorphs, pseudopolymorphs, solvates, hydrates, unsolvated polymorphs (including anhydrates), conformational polymorphs, and amorphous forms of the compounds, as well as mixtures thereof.
The compounds described herein may exhibit their natural isotopic abundance, or one or more of the atoms may be artificially enriched in a particular isotope having the same atomic number, but an atomic mass or mass number different from the atomic mass or mass number predominantly found in nature. All isotopic variations of the compounds of the present disclosure, whether radioactive or not, are encompassed within the scope of the present disclosure. For example, hydrogen has three naturally occurring isotopes, denoted 1H (protium), 2H (deuterium), and 3H (tritium). Protium is the most abundant isotope of hydrogen in nature. Enriching for deuterium may afford certain therapeutic advantages, such as increased in vivo half-life and/or exposure, or may provide a compound useful for investigating in vivo routes of drug elimination and metabolism. Isotopically-enriched compounds may be prepared by conventional techniques well known to those skilled in the art.
“Isomers” are different compounds that have the same molecular formula. “Stereoisomers” are isomers that differ only in the way the atoms are arranged in space. “Enantiomers” are a pair of stereoisomers that are non superimposable mirror images of each other. A 1:1 mixture of a pair of enantiomers is a “racemic” mixture. The term “(±)” is used to designate a racemic mixture where appropriate. “Diastereoisomers” or “diastereomers” are stereoisomers that have at least two asymmetric atoms but are not mirror images of each other. The absolute stereochemistry is specified according to the Cahn-Ingold-Prelog R-S system. When a compound is a pure enantiomer, the stereochemistry at each chiral carbon can be specified by either R or S. Resolved compounds whose absolute configuration is unknown can be designated (+) or (−) depending on the direction (dextro- or levorotatory) in which they rotate plane polarized light at the wavelength of the sodium D line. Certain compounds described herein contain one or more asymmetric centers and can thus give rise to enantiomers, diastereomers, and other stereoisomeric forms, the asymmetric centers of which can be defined, in terms of absolute stereochemistry, as (R)- or (S)-. The present chemical entities, pharmaceutical compositions and methods are meant to include all such possible stereoisomers, including racemic mixtures, optically pure forms, mixtures of diastereomers and intermediate mixtures. Optically active (R)- and (S)-isomers can be prepared using chiral synthons or chiral reagents, or resolved using conventional techniques. The optical activity of a compound can be analyzed via any suitable method, including but not limited to chiral chromatography and polarimetry, and the degree of predominance of one stereoisomer over the other isomer can be determined.
Chemical entities having carbon-carbon double bonds or carbon-nitrogen double bonds may exist in Z- or E-form (or cis- or trans-form). Furthermore, some chemical entities may exist in various tautomeric forms. Unless otherwise specified, chemical entities described herein are intended to include all Z-, E- and tautomeric forms as well.
Isolation and purification of the chemical entities and intermediates described herein can be affected, if desired, by any suitable separation or purification procedure such as, for example, filtration, extraction, crystallization, column chromatography, thin-layer chromatography or thick-layer chromatography, or a combination of these procedures. Specific illustrations of suitable separation and isolation procedures can be had by reference to the examples herein below. However, other equivalent separation or isolation procedures can also be used.
When stereochemistry is not specified, certain small molecules described herein include, but are not limited to, when possible, their isomers, such as enantiomers and diastereomers, mixtures of enantiomers, including racemates, mixtures of diastereomers, and other mixtures thereof, to the extent they can be made by one of ordinary skill in the art by routine experimentation. In those situations, the single enantiomers or diastereomers, i.e., optically active forms, can be obtained by asymmetric synthesis or by resolution of the racemates or mixtures of diastereomers. Resolution of the racemates or mixtures of diastereomers, if possible, can be accomplished, for example, by conventional methods such as crystallization in the presence of a resolving agent, or chromatography, using, for example, a chiral high-pressure liquid chromatography (HPLC) column. Furthermore, a mixture of two enantiomers enriched in one of the two can be purified to provide further optically enriched form of the major enantiomer by recrystallization and/or trituration. In addition, such certain small molecules include Z- and E-forms (or cis- and trans-forms) of certain small molecules with carbon-carbon double bonds or carbon-nitrogen double bonds. Where certain small molecules described herein exist in various tautomeric forms, the term “certain small molecule” is intended to include all tautomeric forms of the certain small molecule.
The term “salt” or “pharmaceutically acceptable salt” refers to salts derived from a variety of organic and inorganic counter ions well known in the art. Pharmaceutically acceptable acid addition salts can be formed with inorganic acids and organic acids. Inorganic acids from which salts can be derived include, for example, hydrochloric acid, hydrobromic acid, sulfuric acid, nitric acid, phosphoric acid, and the like. Organic acids from which salts can be derived include, for example, acetic acid, propionic acid, glycolic acid, pyruvic acid, oxalic acid, maleic acid, malonic acid, succinic acid, fumaric acid, tartaric acid, citric acid, benzoic acid, cinnamic acid, mandelic acid, methanesulfonic acid, ethanesulfonic acid, p-toluenesulfonic acid, salicylic acid, and the like. Pharmaceutically acceptable base addition salts can be formed with inorganic and organic bases. Inorganic bases from which salts can be derived include, for example, sodium, potassium, lithium, ammonium, calcium, magnesium, iron, zinc, copper, manganese, aluminum, and the like. Organic bases from which salts can be derived include, for example, primary, secondary, and tertiary amines, substituted amines including naturally occurring substituted amines, cyclic amines, basic ion exchange resins, and the like, specifically such as isopropylamine, trimethylamine, diethylamine, triethylamine, tripropylamine, and ethanolamine. In some embodiments, the pharmaceutically acceptable base addition salt is chosen from ammonium, potassium, sodium, calcium, and magnesium salts.
“Pharmaceutically acceptable carrier, diluent or excipient” includes without limitation any adjuvant, carrier, excipient, glidant, sweetening agent, diluent, preservative, dye, colorant, flavor enhancer, surfactant, wetting agent, dispersing agent, suspending agent, stabilizer, isotonic agent, solvent, or emulsifier which has been approved by the United States Food and Drug Administration as being acceptable for use in humans or domestic animals.
The term “effective amount” or “therapeutically effective amount” refers to that amount of a compound described herein that is sufficient to affect the intended application, including but not limited to disease treatment, as defined below. The therapeutically effective amount may vary depending upon the intended treatment application (in vivo), or the subject and disease condition being treated, e.g., the weight and age of the subject, the severity of the disease condition, the manner of administration and the like, which can readily be determined by one of ordinary skill in the art. The term also applies to a dose that will induce a particular response in target cells, e.g., reduction of platelet adhesion and/or cell migration. The specific dose will vary depending on the particular compounds chosen, the dosing regimen to be followed, whether it is administered in combination with other compounds, timing of administration, the tissue to which it is administered, and the physical delivery system in which it is carried.
As used herein, “treatment” or “treating” refers to an approach for obtaining beneficial or desired results with respect to a disease, disorder, or medical condition including but not limited to a therapeutic benefit and/or a prophylactic benefit. By therapeutic benefit is meant eradication or amelioration of the underlying disorder being treated. Also, a therapeutic benefit is achieved with the eradication or amelioration of one or more of the physiological symptoms associated with the underlying disorder such that an improvement is observed in the subject, notwithstanding that the subject may still be afflicted with the underlying disorder. In certain embodiments, for prophylactic benefit, the compositions are administered to a subject at risk of developing a particular disease, or to a subject reporting one or more of the physiological symptoms of a disease, even though a diagnosis of this disease may not have been made.
A “therapeutic effect,” as that term is used herein, encompasses a therapeutic benefit and/or a prophylactic benefit as described above. A prophylactic effect includes delaying or eliminating the appearance of a disease or condition, delaying or eliminating the onset of symptoms of a disease or condition, slowing, halting, or reversing the progression of a disease or condition, or any combination thereof.
The term “co-administration,” “administered in combination with,” and their grammatical equivalents, as used herein, encompass administration of two or more agents to an animal, including humans, so that both agents and/or their metabolites are present in the subject at the same time. Co-administration includes simultaneous administration in separate compositions, administration at different times in separate compositions, or administration in a composition in which both agents are present.
The terms “antagonist” and “inhibitor” are used interchangeably, and they refer to a compound having the ability to inhibit a biological function (e.g., activity, expression, binding, protein-protein interaction) of a target protein or enzyme (e.g., CD73). Accordingly, the terms “antagonist” and “inhibitor” are defined in the context of the biological role of the target protein. While preferred antagonists herein specifically interact with (e.g., bind to) the target, compounds that inhibit a biological activity of the target protein by interacting with other members of the signal transduction pathway of which the target protein is a member are also specifically included within this definition. A preferred biological activity inhibited by an antagonist is associated with the development, growth, or spread of a tumor.
The term “agonist” as used herein refers to a compound having the ability to initiate or enhance a biological function of a target protein, whether by inhibiting the activity or expression of the target protein. Accordingly, the term “agonist” is defined in the context of the biological role of the target polypeptide. While preferred agonists herein specifically interact with (e.g., bind to) the target, compounds that initiate or enhance a biological activity of the target polypeptide by interacting with other members of the signal transduction pathway of which the target polypeptide is a member are also specifically included within this definition.
“Signal transduction” is a process during which stimulatory or inhibitory signals are transmitted into and within a cell to elicit an intracellular response. A modulator of a signal transduction pathway refers to a compound which modulates the activity of one or more cellular proteins mapped to the same specific signal transduction pathway. A modulator may augment (agonist) or suppress (antagonist) the activity of a signaling molecule.
An “anti-cancer agent”, “anti-tumor agent” or “chemotherapeutic agent” refers to any agent useful in the treatment of a neoplastic condition. One class of anti-cancer agents comprises chemotherapeutic agents. “Chemotherapy” means the administration of one or more chemotherapeutic drugs and/or other agents to a cancer patient by various methods, including intravenous, oral, intramuscular, intraperitoneal, intravesical, subcutaneous, transdermal, buccal, or inhalation or in the form of a suppository.
The term “cell proliferation” refers to a phenomenon by which the cell number has changed as a result of division. This term also encompasses cell growth by which the cell morphology has changed (e.g., increased in size) consistent with a proliferative signal.
The term “selective inhibition” or “selectively inhibit” refers to the ability of a biologically active agent to preferentially reduce the target signaling activity as compared to off-target signaling activity, via direct or indirect interaction with the target.
“Subject” refers to an animal, such as a mammal, for example a human. The methods described herein can be useful in both human therapeutics and veterinary applications. In some embodiments, the subject is a mammal, and in some embodiments, the subject is human. “Mammal” includes humans and both domestic animals such as laboratory animals and household pets (e.g., cats, dogs, swine, cattle, sheep, goats, horses, rabbits), and non-domestic animals such as wildlife and the like.
“Prodrug” is meant to indicate a compound that may be converted under physiological conditions or by solvolysis to a biologically active compound described herein (e.g., compound of Formula (I), (I-A), (I-B), (I-C), (I-D), (I-E) or (II)). Thus, the term “prodrug” refers to a precursor of a biologically active compound that is pharmaceutically acceptable. In some aspects, a prodrug is inactive when administered to a subject but is converted in vivo to an active compound, for example, by hydrolysis. In some aspects, a prodrug has reduced activity compared to that of the parent compound. The prodrug compound often offers advantages of oral bioavailability, solubility, tissue compatibility or delayed release in a mammalian organism (see, e.g., Bundgard, H., Design of Prodrugs (1985), pp. 7-9, 21-24 (Elsevier, Amsterdam); Higuchi, T., et al., “Pro-drugs as Novel Delivery Systems,” (1987) A.C.S. Symposium Series, Vol. 14; and Bioreversible Carriers in Drug Design, ed. Edward B. Roche, American Pharmaceutical Association and Pergamon Press) each of which is incorporated in full by reference herein. The term “prodrug” is also meant to include any covalently bonded carriers, which release the active compound in vivo when such prodrug is administered to a mammalian subject. Prodrugs of an active compound, as described herein, are typically prepared by modifying functional groups present in the active compound in such a way that the modifications are cleaved, either in routine manipulation or in vivo, to the parent active compound. Prodrugs include compounds wherein a hydroxy, amino or mercapto group is bonded to any group that, when the prodrug of the active compound is administered to a mammalian subject, cleaves to form a free hydroxy, free amino or free mercapto group, respectively. Examples of prodrugs include, but are not limited to, acetate, formate and benzoate derivatives of a hydroxy functional group, or acetamide, formamide and benzamide derivatives of an amine functional group in the active compound and the like.
The term “in vivo” refers to an event that takes place in a subject's body.
The term “in vitro” refers to an event that takes places outside of a subject's body. For example, an in vitro assay encompasses any assay run outside of a subject. In vitro assays encompass cell-based assays in which cells alive or dead are employed. In vitro assays also encompass a cell-free assay in which no intact cells are employed.
The disclosure is also meant to encompass the in vivo metabolic products of the disclosed compounds. Such products may result from, for example, the oxidation, reduction, hydrolysis, amidation, esterification, and the like of the administered compound, primarily due to enzymatic processes. Accordingly, the disclosure includes compounds produced by a process comprising administering a compound of this disclosure to a mammal for a period of time sufficient to yield a metabolic product thereof. Such products are typically identified by administering a radiolabeled compound of the disclosure in a detectable dose to an animal, such as rat, mouse, guinea pig, monkey, or to human, allowing sufficient time for metabolism to occur, and isolating its conversion products from the urine, blood or other biological samples.
The chemical naming protocol and structure diagrams used herein are a modified form of the I.U.P.A.C. nomenclature system, using ChemDraw Professional 15.1 or OpenEye Scientific Software's mol2nam application. For complex chemical names employed herein, a substituent group is typically named before the group to which it attaches. For example, cyclopropylethyl comprises an ethyl backbone with a cyclopropyl substituent. Except as described below, all bonds are identified in the chemical structure diagrams herein, except for all bonds on some carbon atoms, which are assumed to be bonded to sufficient hydrogen atoms to complete the valency.
The present disclosure provides compounds that are capable of selectively binding to and/or modulating CD73. In some embodiments, the compounds modulate CD73 by binding to or interacting with one or more amino acids. The binding of these compounds may disrupt the ability of CD73 to hydrolyze adenosine monophosphate (AMP).
In certain aspects, the present disclosure provides a compound of Formula (I)
or a pharmaceutically acceptable salt thereof, wherein:
In some embodiments, the present disclosure provides a compound of Formula (X):
or a pharmaceutically acceptable salt thereof, wherein:
In some embodiments, for a compound of Formula (I):
In some embodiments, a compound of Formula (I) is represented by the structure
In some embodiments, a compound of Formula (I) is represented by the structure
In some embodiments, a compound of Formula (I) is represented by the structure
In some embodiments, a compound of Formula (I) is represented by the structure
In some embodiments, for a compound of Formula (I), one of W1 or W6 is S. In some embodiments, one of W1 or W6 is S and W5 is C. In some embodiments, W6 and W5 are N and W1 is CH. In some embodiments, W1 is N, W6 is CH, and W5 is C. In some embodiments, W3 is N and W4 is C. In some embodiments, W5 is N and W4 is C. In some embodiments, W6 and W1 are each independently CR6. In some embodiments, W3 and W5 are each N. In some embodiments, W1 is selected from N and CH; W3 is N; W4 is C; W5 is N; and W6 is selected from N and CH.
In some embodiments, for a compound of Formula (I), R15 is selected from —NR1R2; and C3-12 membered carbocycle and 3- to 12-membered heterocycle, each of which is optionally substituted with one or more R7. In some embodiments, R15 is —NR1R2.
In some embodiments, for a compound of Formula (I), R15 is —NR1R2, wherein R1 is selected from hydrogen and C1-6 alkyl, wherein the C1-6 alkyl is optionally substituted with one or more R7. In some embodiments, R1 is selected from hydrogen and —CH3.
In some embodiments, for a compound of Formula (I), R15 is —NR1R2, wherein R2 is selected from C1-6 alkyl, C3-12 carbocycle, 3- to 12-membered heterocycle and benzyl, each of which is optionally substituted with one or more substituents independently selected from halogen, —CN, C1-4 alkyl, C1-3 haloalkyl, —OH and —NH2. In some embodiments, R2 is benzyl, optionally substituted with one or more R7. In some embodiments, R2 is benzyl, optionally substituted with one or more substituents independently selected from halogen, —CN, C1-4 alkyl, C1-3 haloalkyl, —OH and —NH2. In some embodiments, R2 is C1-6 alkyl or C3-8 cycloalkyl, each of which is optionally substituted with one or more substituents independently selected from halogen, —CN, C1-3 haloalkyl, —OH, —NH2, optionally substituted phenyl and optionally substituted pyridyl. In some embodiments, R2 is C3-8 cycloalkyl, such as cyclopropyl, cyclobutyl, cyclopentyl or cyclohexyl. In some embodiments, R2 is C1-4 alkyl, such as methyl, ethyl, propyl, isopropyl, n-butyl, sec-butyl, isobutyl or tert-butyl. In some embodiments, R2 is C1-6 alkyl, C3-8 cycloalkyl, or benzyl, each of which is optionally substituted with one or more substituents independently selected from halogen, —CN, C1-4 alkyl, C1-3 haloalkyl, —OH and —NH2.
In some embodiments, for a compound of Formula (I), R15 is selected from
each of which is optionally substituted with one or more R7. In some embodiments, R15 is optionally substituted with one or more substituents independently selected from halogen, —CN, C1-4 alkyl, C1-3 haloalkyl, —OH and —NH2. In some embodiments, R15 is substituted with one or more substituents selected from halogen. In some embodiments, R15 is substituted with one or more substituents selected from fluorine or chlorine. In some embodiments, R15 is substituted with one or more fluorines.
In some embodiments, for a compound of Formula (I), R15 is selected from
In some embodiments, R15 is selected from
In some embodiments, R15 is selected from
In some embodiments, for a compound of Formula (I), R15 is —NR1R2, wherein R1 and R2 are taken together with the nitrogen atom to which they are attached to form a 3- to 12-membered heterocycle, optionally substituted with one or more R7. In some embodiments, le and R2 are taken together with the nitrogen atom to which they are attached to form a 3- to 12-membered heterocycle, optionally substituted with one or more substituents independently selected from halogen, —CN, C1-4 alkyl, C1-3 haloalkyl, —OH and —NH2. In some embodiments, the 3- to 12-membered heterocycle formed by R1, R2 and the nitrogen atom to which they are attached is selected from
In some embodiments, for a compound of Formula (I), R15 is —NR1R2, wherein R1 and R2 are taken together with the nitrogen atom to which they are attached to form optionally substituted 3- to 7-membered monocyclic heterocycloalkyl or optionally substituted 5- to 12-membered fused bicyclic heterocycloalkyl. In some embodiments, R1 and R2 are taken together with the nitrogen atom to which they are attached to form optionally substituted 3- to 7-membered monocyclic heterocyloalkyl. In some embodiments, the 3- to 7-membered monocyclic heterocyloalkyl may be selected from
In some embodiments, R1 and R2 are taken together with the nitrogen atom to which they are attached to form optionally substituted 5- to 12-membered fused bicyclic heterocycloalkyl. In some embodiments, the 5- to 12-membered fused bicyclic heterocycloalkyl may be selected from
In some embodiments, the 3- to 7-membered monocyclic heterocycloalkyl is substituted with halogen, —CN, C1-4 alkyl, C1-3 haloalkyl, —OH or —NH2. In some embodiments, the 5 to 12-membered fused bicyclic heterocycloalkyl is substituted with halogen, —CN, C1-4 alkyl, C1-3 haloalkyl, —OH or —NH2. In some embodiments, the 3- to 7-membered monocyclic heterocycloalkyl is substituted with fluorine or chlorine. In some embodiments, the 3- to 7-membered monocyclic heterocycloalkyl is substituted with fluorine. In some embodiments, the 5- to 12-membered fused bicyclic heterocycloalkyl is substituted with fluorine or chlorine. In some embodiments, the 5- to 12-membered fused bicyclic heterocycloalkyl is substituted with fluorine.
In some embodiments, for a compound of Formula (I), R15 is —NR1R2, wherein R2 is benzyl, optionally substituted with one or more R7. In some embodiments, R2 is benzyl, optionally substituted with one or more substituents independently selected from halogen, —CN, C1-4 alkyl, C1-3 haloalkyl, —OH and —NH2. In some embodiments, R2 is benzyl, substituted with one or more substituents independently selected from fluorine and chlorine. In some embodiments, R2 is benzyl, substituted with one or more substituents selected from fluorine.
In some embodiments, for a compound of Formula (I), R15 is —NR1R2, wherein R1 and R2 are taken together with the nitrogen atom to which they are attached to form a 3- to 12-membered heterocycle, substituted with one or more substituents selected from halogen. In some embodiments, the 3- to 12-membered heterocycle is substituted with fluorine or chlorine. In some embodiments, the 3- to 12-membered heterocycle is substituted with fluorine. In some embodiments, the one or more substituents are not attached to the same carbon.
In some embodiments, for a compound of Formula (I), R15 is —NR1R2, wherein R2 is selected from C3-12 carbocycle and 3- to 12-membered heterocycle, each of which is substituted with one or more substituents selected from halogen. In some embodiments, R2 is selected from C3-12 carbocycle substituted with one or more substituents selected from halogen. In some embodiments, the C3-12 carbocycle is selected from cyclopropyl, cyclobutyl, cyclopentyl, cyclohexyl, cycloheptyl, and cyclooctyl. In some embodiments, the C3-12 carbocycle is selected from
In some embodiments, R2 is selected from 3- to 12-membered heterocycle substituted with one or more substituents selected from halogen. In some embodiments R2 is selected from a 3- to 12-membered fused bicyclic heterocycle substituted with one or more substituents selected from halogen. In some embodiments, the 3- to 12-membered fused bicyclic heterocycle is selected from
In some embodiments, the halogen is fluorine or chlorine. In some embodiments, the halogen is fluorine.
In certain aspects, for a compound of Formula (I)
In some embodiments, for a compound of Formula (I), R15 is substituted. In some embodiments, R15 is substituted by at least one halogen. In some embodiments, R15 is substituted by at least one fluorine. In some embodiments, R15 is substituted by 1, 2 or 3 fluorines.
In some embodiments, a compound of Formula (I) is represented by Formula (I-A) or (I-B):
or a pharmaceutically acceptable salt thereof, wherein:
In some embodiments, a compound of Formula (I-A) or (I-B) is represented by the structure
In some embodiments, a compound of Formula (I-A) or (I-B) is represented by the structure
In some embodiments, a compound of Formula (I-A) or (I-B) is represented by the structure
In some embodiments, a compound of Formula (I-A) or (I-B) is represented by the structure
In some embodiments, for a compound of Formula (I-A) or (I-B), R11 is selected from C1-6 alkyl and C3-12 carbocycle, each of which is optionally substituted with one or more R7; R12 is independently selected at each occurrence from R7; and n is an integer from 0 to 3.
In some embodiments, for a compound of Formula (I-A) or (I-B), R11 is C1-6 alkyl, such as C1-4 alkyl. In some embodiments, R11 is selected from methyl, ethyl, iso-propyl and tert-butyl. In some embodiments, R11 is selected from C1-4 alkyl and C3-12 cycloalkyl, each of which is optionally substituted with one or more R7. In some embodiments, R11 is —CH3. In some embodiments, R11 is selected from R7.
In some embodiments, for a compound of Formula (I-A) or (I-B), R12 is independently selected at each occurrence from halogen, —CN, alkoxy, haloalkoxy, alkyl and haloalkyl. In some embodiments, R12 is independently selected at each occurrence from halogen, —CN, C1-4 alkoxy, C1-4 haloalkoxy, C1-4 alkyl and C1-4 haloalkyl. In some embodiments, R12 is independently selected at each occurrence from halogen, —CN, C1-4 alkoxy, C1-4 fluoroalkoxy, C1-4 alkyl and C1-4 haloalkyl. In some embodiments, R12 is independently selected at each occurrence from halogen, —CN, C1-4 alkyl and C1-3 haloalkyl. In some embodiments, R12 is independently selected at each occurrence from —F, —Cl, —CN, —CH3 and —CF3. In some embodiments, R12 is independently selected at each occurrence from halogen, —CN, —CH3 and —CF3. In some embodiments, R12 is independently selected at each occurrence from —F and —Cl. In some embodiments, R12 is —F.
In some embodiments, for a compound of Formula (I-A) or (I-B), n is an integer from 1 to 4, such as n is 1.
In some embodiments, for a compound of Formula (I-A) or (I-B):
In some embodiments, for a compound of Formula (I-A) or (I-B):
In some embodiments, for a compound of Formula (I-A) or (I-B), one of W1 or W6 is S. In some embodiments, one of W1 or W6 is S and W5 is C. In some embodiments, W6 and W5 are N and W1 is CH. In some embodiments, W1 is N, W6 is CH, and W5 is C. In some embodiments, W3 is N and W4 is C. In some embodiments, W5 is N and W4 is C. In some embodiments, W6 and W1 are each independently CR6. In some embodiments, W3 and W5 are each N. In some embodiments, W1 is selected from N and CH; W3 is N; W4 is C; W5 is N; and W6 is selected from N and CH.
In some embodiments, a compound of Formula (I) is represented by Formula (I-C):
or a pharmaceutically acceptable salt thereof, wherein:
In some embodiments, for a compound of Formula (I-C), Z is selected from C3-12 monocyclic cycloalkyl or C5-12 fused bicyclic cycloalkyl, each of which is optionally substituted with one or more R7. In some embodiments, Z is selected from
In some embodiments, Z is selected from C3-12 monocyclic cycloalkyl, optionally substituted with one or more R7. In some embodiments, the C3-12 monocyclic cycloalkyl is selected from
In some embodiments, Z is C5-12 fused bicyclic cycloalkyl, optionally substituted with one or more R7. In some embodiments, the C5-12 fused bicyclic cycloalkyl is selected from
In some embodiments, Z is substituted with one or more substituents independently selected from halogen, —CN, C1-4 alkyl and C1-3 haloalkyl. In some embodiments, Z is substituted with one or more substituents independently selected from halogen. In some embodiments, Z is substituted with one or more substituents independently selected from fluorine and chlorine. In some embodiments, Z is substituted with fluorine. In some embodiments, the one or more substituents are not attached to the same carbon. In some embodiments, the one or more substituents are fluorine, and are not attached to the same carbon.
In some embodiments, for a compound of Formula (I), (I-A), (I-B), or (I-C), R1 is selected from hydrogen and C1-6 alkyl, wherein the C1-6 alkyl is optionally substituted with one or more R7. In some embodiments, R1 is selected from hydrogen and —CH3. In some embodiments, R1 is C1-6 alkyl, such as —CH3.
In some embodiments, for a compound of Formula (I-C), one of W1 or W6 is S. In some embodiments, one of W1 or W6 is S and W5 is C. In some embodiments, W6 and W5 are N and W1 is CH. In some embodiments, W1 is N, W6 is CH, and W5 is C. In some embodiments, W3 is N and W4 is C. In some embodiments, W5 is N and W4 is C. In some embodiments, W6 and W1 are each independently CR6. In some embodiments, W3 and W5 are each N. In some embodiments, W1 is selected from N and CH; W3 is N; W4 is C; W5 is N; and W6 is selected from N and CH.
In certain aspects, for a compound of Formula (I-C)
In some embodiments, for a compound of Formula (I-C), Z is substituted. In some embodiments, Z is substituted by at least one halogen. In some embodiments, Z is substituted by at least one fluorine. In some embodiments, Z is substituted by 1, 2 or 3 fluorines.
In some aspects, the disclosure provides a compound of Formula (II):
or a pharmaceutically acceptable salt thereof, wherein:
In some embodiments, for a compound of Formula (II), W1 is selected from N, NR8, and CR6; W2 is selected from N and CR16; W3 is selected from N and CR6; W4 and W5 are each independently selected from N and C; and W6 is selected from N and CR6; wherein at least one of W1, W2, W3, W4, W5, and W6 is N, and provided that when W1, W2, W3, W5, and W6 are N, W4 is not N.
In some embodiments, for a compound of Formula (II), Z is represented by
each of which is substituted by one or more halogen. In some embodiments, Z is represented by
In some embodiments, for a compound of Formula (I), (I-A), (I-B) (I-C), (I-D), (I-E), or (II), R13 is hydrogen and R17 is —OH. In some embodiments, R13 is fluorine and R17 is hydrogen. In some embodiments, R13 is halogen and R17 is hydrogen. In some embodiments, R13 is selected from hydrogen and halogen, and R17 is selected from hydrogen and —OH. In some embodiments, one of R13 and R17 is hydrogen, and the other of R13 and R17 is selected from halogen and —OH. In some embodiments, one of R13 and R17 is not hydrogen.
In some embodiments, for a compound of Formula (I), (I-A), (I-B) (I-C), (I-D), (I-E), or (II), R14 is selected from hydrogen and phenyl. In some embodiments, R14 is hydrogen. In some embodiments, R14 is selected from hydrogen, —CH2OH, —N3 and —NR8C(═O)R8. In some embodiments, R14 is selected from —CH2OH, —N3 and —NR8C(═O)R8. In some embodiments, R14 is selected from hydrogen, phenyl, benzyl, —CH2OH, —N3 and —NR8C(═O)R8. In some embodiments, R14 is selected from hydrogen; and C3-12 carbocycle and 3- to 12-membered heterocycle each of which is optionally substituted with one or more substituents selected from halogen, —NO2, —CN, —SR8, —N(R8)2, —NR9R10, —S(═O)R8, —S(═O)2R8, —S(═O)2N(R8)2, —S(═O)2NR9R10, S(═O)2R8, S(═O)2N(R8)2, S(═O)2NR9R10, C(═O)R8, —C(═O)OR8, —OC(═O)R8, —OC(═O)OR8, —OC(═O)N(R8)2, —OC(═O)NR9R10, —NR8C(═O)OR8, —NR8C(═O)OR8, —NR8C(═O)N(R8)2, —NR8C(═O)NR9R10, —C(═O)N(R8, —C(═O)NR9R10, —P(═O)(OR8)2, —P(═O)(R8)2, ═O, ═S, ═N(R8), C1-6 alkyl, C1-6 haloalkyl, C2-6 alkenyl, and C2-6 alkynyl. In some embodiments, R14 is phenyl.
In some embodiments, for a compound of Formula (I), (I-A), (I-B) (I-E), or (II), W1 is selected from N and CR6; W2 is CR16; W3 is N; R1 is selected from hydrogen and C1-4 alkyl; R3 is selected from halogen and —CN; and R16 is selected from halogen, —CN and C1-4 alkyl.
In some embodiments, for a compound of Formula (I), (I-A), (I-B) (I-E), or (II), Oa is —OH. In some embodiments, Oa is taken together with R4 to form a 3- to 20-membered heterocycle, optionally substituted with one or more R7.
In some embodiments, for a compound of Formula (I), (I-A), (I-B) (I-E), or (II), R1 is selected from hydrogen and C1-6 alkyl, wherein the C1-6 alkyl is optionally substituted with one or more R7. In some embodiments, R1 is selected from hydrogen and —CH3. In some embodiments, R1 is C1-6 alkyl, such as —CH3.
In some embodiments, for a compound of Formula (I), (I-A), (I-B) (I-E), or (II), W3 is N. In some embodiments, W2 is CR16. In some embodiments, W1 is N or CH, such as W1 is N. In some embodiments, W1 is CH. In some embodiments, W3 is N and W2 is CR16, such as C—CN. In some embodiments, W1 is CH and W3 is N. In some embodiments, W1 is N, W2 is CCN and W3 is N. In some embodiments, W1 and W3 are each N. In some embodiments, W3 and W5 are each N. In some embodiments, W3 is N and W1 is S. In some embodiments, W3 is N and W6 is S. In some embodiments W3, W1, W6 and W5 are each N. In some embodiments, W5 is C. In some embodiments, W1 is N, W3 is N, W4 is C, W5 is C and W6 is CH. In some embodiments, W1 is S, W3 is N, W4 is C, W5 is C and W6 is CH. In some embodiments, W1 is selected from N, NH, CR6 and S. In some embodiments, W3 and W5 are each N. In some embodiments, W1 is selected from N and CH; W3 is N; W4 is C; W5 is N; and W6 is selected from N and CH. In some embodiments, W1 is selected from N, NR8, and CR6; W2 is selected from N and CR16; W3 is selected from N and CR6; W4 and W5 are each independently selected from N and C; and W6 is selected from N and CR6; wherein at least one of W′, W2, W3, W4, W5, and W6 is N, and provided that when W1, W2, W3, W5, and W6 are N, W4 is not N.
In some embodiments, for a compound of Formula (I), (I-A), (I-B) (I-E), or (II), A is selected from —O—, —S—, —S(═O)—, —S(═O)2— and —OP(═O)(OH)—. In some embodiments, A is selected from —S(═O)— and —S(═O)2—. In some embodiments, A is selected from —S— and —S(═O)2—. In some embodiments, A is selected from —S— and —S(═O)—. In some embodiments, A is —S—. In some embodiments, A is —S(═O)—. In some embodiments, A is —S(═O)2—. In some embodiments, A is selected from —OP(═O)(OH)— and —O—. In some embodiments, A is —OP(═O)(OH)—. In some embodiments, A is —O—. In some embodiments, A is selected from —O—, —S—, —S(═O)— and —S(═O)2—. In some embodiments, A is selected from —S—, —S(═O)— and —S(═O)2—.
In some embodiments, for a compound of Formula (I), (I-A), (I-B) (I-D), (I-E), or (II), R3 is selected from hydrogen, halogen and —CN; and C1-6 alkyl, aryl, heteroaryl and benzyl, each of which is optionally substituted with one or more R7. In some embodiments, R3 is selected from hydrogen, halogen, —CN, C1-3 alkyl and C1-3 haloalkyl. In some embodiments, R3 is selected from —H, —Cl and —CN. In some embodiments, R3 is selected from hydrogen, halogen and —CN.
In some embodiments, for a compound of Formula (I), (I-A), (I-B) (I-D), (I-E), or (II), R3 is selected from halogen and —CN; and C1-6 alkyl, aryl, heteroaryl and benzyl, each of which is optionally substituted with one or more R7. In some embodiments, R3 is selected from halogen, —CN, C1-3 alkyl and C1-3 haloalkyl. In some embodiments, R3 is selected from halogen, —CN, —N(R8)2, —OR8, and C2-10 alkynyl, wherein said C2-10 alkynyl is optionally substituted with one or more R7. In some embodiments, R3 is selected from halogen and —CN. In some embodiments, R3 is selected from —Cl and —CN. In some embodiments, R3 is selected from halogen and —CN. In some embodiments, R3 is selected from halogen. In some embodiments, R3 is selected from —Cl and —F. In some embodiments, R3 is —Cl.
In some embodiments, for a compound of Formula (I), (I-A), (I-B) (I-D), (I-E), or (II), R3 is selected from halogen, —CN, C2-10 alkynyl, and —OR8. In some embodiments, R3 is C2-alkynyl optionally substituted with one or more R7. In some embodiments, the C2-alkynyl is selected from
In some embodiments, R3 is —OR8. In some embodiments, R3 is selected from
In some embodiments, for a compound of Formula (I), (I-A), (I-B) (I-D), (I-E), or (II), R16 is selected from halogen, —CN, —C(═O)R7, and C1-6 alkyl, wherein said C1-6 alkyl is optionally substituted with one or more R7, such as —OH. In some embodiments, R16 is selected from —Cl, —F, —CN, —C(═O)NH2, —C(═O)NHMe, and C1-6 alkyl, wherein said C1-6 alkyl is optionally substituted with —OH. In some embodiments, R16 is selected from —Cl and —CN. In some embodiments, R16 is —CN.
In some embodiments, for a compound of Formula (I), (I-A), (I-B) (I-C), (I-D), (I-E), or (II), R3 is —Cl and R16 is —CN; or R3 is —CN or R16 is —Cl. In some embodiments, R3 is —Cl and R16 is —CN. In some embodiments, R3 is —CN or R16 is —Cl.
In some embodiments, for a compound of Formula (I), (I-A), (I-B) (I-C), (I-D), (I-E), or (II), at least one of R4 and R5 is C1-6 alkyl, optionally substituted at each occurrence with one or more substituents selected from halogen, —OR8, —S—S—R8, —S—C(═O)R8, —OC(═O)R8, —OC(═O)OR8 and —P(═O)(OR8)2. In some embodiments, R4 and R5 are independently selected from C1-6 alkyl, optionally substituted at each occurrence with one or more substituents selected from halogen, —OR8, —S—S—R8, —S—C(═O)R8, —OC(═O)R8, —OC(═O)OR8 and —P(═O)(OR8)2. In some embodiments, R4 and R5 are independently selected from hydrogen and C1-6 alkyl, wherein the C1-6 alkyl is optionally substituted at each occurrence with one or more substituents selected from halogen, —OR8, —S—S—R8, —S—C(═O)R8, —OC(═O)R8, —OC(═O)OR8 and —P(═O)(OR8)2. In some embodiments, R4 and R5 are independently selected from —CH2OC(═O)R8 and —CH2OC(═O)OR8. In some embodiments, one of R4 and R5 is phenyl. In some embodiments, R4 and R5 are independently selected from CH2OC(═O)C(CH3)3, CH2OC(═O)OCH(CH3)2, CH2OC(═O)CH3, CH2CH2—S—S—(CH2)2OH and CH2CH2—S—C(═O)CH3.
In some embodiments, for a compound of Formula (I), (I-A), (I-B) (I-C), (I-D), (I-E), or (II), R4 is
wherein:
In some embodiments, m is 0. In some embodiments, m is 1. In some embodiments, m is 2. In some embodiments, R4 is
In some embodiments, R4 is
In some embodiments, for a compound of Formula (I), (I-A), (I-B) (I-C), (I-D), (I-E), or (II), R4 is taken together with Oa to form a 3- to 20-membered heterocycle, optionally substituted with one or more R7. In some embodiments, a compound of Formula (I) is represented by Formula (I-D):
In some embodiments A is —O—. In some embodiments A is —S—. In some embodiments, a compound of Formula (I) is represented by Formula (I-E):
wherein W is —(OCH2OC(═O))l—; l is an integer from 0 to 5; and R19 is selected from hydrogen and R7.
In some embodiments, for a compound of Formula (I), (I-A), (I-B) (I-C), (I-D), (I-E), or (II), R4 is phenyl, optionally substituted with OR8; R5 is C1-6 alkyl substituted with one or more substituents selected from —OC(═O)R8, —C(═O)OR8, and —OC(═O)OR8; and R8 is C1-6 alkyl.
In some embodiments, for a compound of Formula (I), (I-A), (I-B) (I-C), (I-D), (I-E), or (II), R4 is a 3- to 12-membered heterocycle. In some embodiments, R4 is a 6-membered heterocycle, such as pyridyl. In some embodiments R4 is pyrimidyl. In some embodiments, R4 and R5 are taken together with the atoms to which they are attached to form a 3- to 12-membered heterocycle, optionally substituted with one or more R7.
In some embodiments, for a compound of Formula (I), (I-A), (I-B) (I-C), (I-D), (I-E), or (II), X and Y are each —O—. In some embodiments, one of X and Y is —O— and the other one of X and Y is —NR8—. In some embodiments, one of X and Y is —O— and the other one of X and Y is —NR8, and R4 and R5 are taken together with the atoms to which they are attached to form a 3- to 12-membered heterocycle, such as a 6-membered heterocycle, optionally substituted with one or more R7.
In some embodiments, for a compound of Formula (I), (I-A), (I-B) (I-C), (I-D), (I-E), or (II), —X—R4 and —Y—R5 are each —OH. In some embodiments, —X—R4 and —Y—R5 are each —OH and A is —OP(═O)(OH)—.
In some embodiments, for a compound of Formula (I), (I-A), (I-B) (I-C), (I-D), (I-E), or (II), at least one of R4 and R5 is selected from C1-6 alkyl, C2-6 alkenyl, and C2-6 alkynyl, each of which is independently optionally substituted at each occurrence with one or more substituents selected from halogen, —NO2, —CN, —OR8, —SR8, —N(R8)2, —NR9R10, —S(═O)R8, —S(═O)2R8, —S(═O)2N(R8)2, —S(═O)2NR9R10, —NR8S(═O)2R8, —NR8S(═O)2N(R8)2, —NR8(═O)2NR9R10, —S—S—R8, —S—C(═O)R8, —C(═O)R8, —C(═O)OR8, —OC(═O)R8, —OC(═O)OR8, —OC(═O)N(R8)2K, —OC(═O)NR9R10, —NR8C(═O)R8, —NR8C(═O)OR8, —NR8C(═O)N(R8)2, —NR8C(═O)NR9R10, —C(O)N(R8)2, —C(═O)NR9R10, —P(═O)(OR8)2, —P(═O)(R8)2, —OP(═O)(OR8)2, ═O, ═S, ═N(R8); and C3-12 carbocycle, and 3- to 12-membered heterocycle, each of which is independently optionally substituted at each occurrence with one or more substituents selected from halogen, C1-6 alkyl, —OR8, —OC(═O)R8, and —C(═O)R8.
In some embodiments, for a compound of Formula (I), (I-A), (I-B) (I-C), (I-D), (I-E), or (II), R4 and R5 are independently selected from C1-6 alkyl, C2-6 alkenyl, and C2-6 alkynyl, each of which is independently optionally substituted at each occurrence with one or more substituents selected from halogen, —NO2, —CN, —OR8, —SR8, —N(R8)2, —NR9R10, —S(O)R8, —S(═O)2R8, —S(═O)2N(R8)2, —S(═O)2NR9R10, —NR8S(═O)2R8, —NR8S(═O)2N(R8)2, —NR8(═O)2NR9R10, —S—S—R8, —S—C(═O)R8, —C(═O)R8, —C(═O)OR8, —OC(═O)R8, —OC(═O)OR8, —OC(═O)N(R8)2K, —OC(═O)NR9R10, —NR8C(═O)R8, —NR8C(═O)OR8, —NR8C(═O)N(R8)2, —NR8C(═O)NR9R10, —C(O)N(R8)2, —C(═O)NR9R10, —P(═O)(OR8)2, —P(═O)(R8)2, —OP(═O)(OR8)2, ═O, ═S, ═N(R8); and C3-12 carbocycle, and 3- to 12-membered heterocycle, each of which is independently optionally substituted at each occurrence with one or more substituents selected from halogen, C1-6 alkyl, —OR8, —OC(═O)R8, and —C(═O)R8.
In some embodiments, for a compound of Formula (I), (I-A), (I-B) (I-C), (I-D), (I-E), or (II), R4 and R5 are independently selected from C1-6 alkyl substituted with one or more substituents selected from halogen, —OC(═O)R8, —OC(═O)OR8, —S—S—R8, —S—C(═O)R8, —OR8, and —P(═O)(OR8)2. In some embodiments, R4 and R5 are independently selected from hydrogen and C1-6 alkyl, wherein each C1-6 alkyl is optionally substituted at each occurrence with one or more substituents selected from halogen, —OC(═O)R8, —OC(═O)OR8, —S—S—R8, —S—C(═O)R8, —OR8, and —P(═O)(OR8)2. In some embodiments, R4 and R5 are independently selected from C1-6 alkyl substituted with one or more substituents selected from —OC(═O)R8 and —OC(═O)OR8. In some embodiments, R4 and R5 are independently selected from C1-6 alkyl substituted with one or more substituents selected from —OC(═O)R8 and —OC(═O)OR8, wherein R8 is C1-6 alkyl. In some embodiments, R4 and R5 are independently selected from CH2OC(═O)C(CH3)3, CH2OC(═O)OCH(CH3)2, and CH2OC(═O)CH3. In some embodiments, R4 and R5 are each CH2OC(═O)C(CH3)3. In some embodiments, R4 and R5 are each CH2OC(═O)OCH(CH3)2.
In some embodiments, for a compound of Formula (I), (I-A), (I-B) (I-C), (I-D), (I-E), or (II), R4 and R5 are independently selected from C1-6 alkyl substituted with one or more substituents selected from and —S—C(═O)R8. In some embodiments, R4 and R5 are independently selected from CH2CH2—S—S—(CH2)2OH and CH2CH2—S—C(═O)CH3. In some embodiments, R4 and R5 are each CH2CH2—S—S—(CH2)2OH. In some embodiments, R4 and R5 are each CH2CH2—S—C(═O)CH3.
In some embodiments, for a compound of Formula (I), (I-A), (I-B) (I-C), (I-D), (I-E), or (II), R4 and R5 are independently selected from C3-12 carbocycle, such as phenyl, wherein the C3-12 carbocycle is optionally substituted with one or more substituents selected from halogen, C1-6 alkyl, —Ole, —OC(═O)R8, —C(═O)OR8, and C(═O)R8. In some embodiments, R4 and R5 are independently selected from phenyl, wherein the phenyl is optionally substituted with Ole, such as phenyl substituted with OCH2CH3. In some embodiments, one of R4 and R5 is selected from C3-12 carbocycle, such as phenyl and benzyl, and the other of R4 and R5 is selected from C1-6 alkyl substituted with one or more substituents selected from —OC(═O)R8, —C(═O)OR8, and —OC(═O)OR8, wherein R8 is C1-6 alkyl.
In some embodiments, for a compound of Formula (I), (I-A), (I-B) (I-C), (I-D), (I-E), or (II), R4 and R5 are independently selected from hydrogen and C1-6alkylene-OR20, wherein R20 at each occurrence is independently selected from C7-20 alkyl and C7-20 alkenyl. In some embodiments, one of R4 or R5 is selected from C1-3 alkylene-O—C7-20 alkyl and C1-3alkylene-O—C7-20 alkenyl, such as one of R4 or R5 is selected from hexadecyloxypropyl (—CH2(CH2)2O(CH2)15CH3), octadecyloxyethyl (—CH2CH2O(CH2)17CH3), oleyoxyethyl (—CH2CH2O(CH2)8CH═CH(CH2)7CH3), and oleyoxypropyl (—CH2(CH2)2O(CH2)8CH═CH(CH2)7CH3), and the other of R4 and R5 is hydrogen.
In some embodiments, for a compound of Formula (I), (I-A), (I-B) (I-C), (I-D), (I-E), or (II), R4 and R5 are taken together with the atoms to which they are attached to form a heterocycle, optionally substituted with one or more R7. In some embodiments, the heterocycle is a 5- or 6-membered heterocycle. In some embodiments, R4 and R5 are taken together with the atoms to which they are attached to form a heterocycle selected from:
In some embodiments, R7 is a halogen.
In some embodiments, for a compound of Formula (I), (I-A), (I-B) (I-C), (I-D), (I-E), or (II), X and Y are each —O—. In some embodiments, one of X and Y is —O— and the other one of X and Y is N(R8)—. In some embodiments, at least one of —X—R4 and —Y—R5 comprises an amino acid or an amino acid ester, such as an L-alanine ester, e.g., —NHCH(CH3)C(═O)OCH(CH3)2 and —NHCH(CH3)C(═O)OCH2CH3. In some embodiments, at least one of —X—R4 and —Y—R5 comprises alanine, serine, phenylalanine, valine, or two or more thereof.
In some embodiments, for a compound of Formula (I), (I-A), (I-B) (I-C), (I-D), (I-E), or (II), —X—R4 and —Y—R5 are independently selected from: —OH, —O—CH3, —O—CH2CH3, —O—CH2-Ph, —O-Ph,
In some embodiments, —X—R4 and —Y—R5 are different, such as —X—R4 is —OH and —Y—R5 is O(CH2)3O(CH2)15CH3. In some embodiments, one of —X—R4 and —Y—R5 is —OH, and the other one of —X—R4 and —Y—R5 is selected from
In some embodiments, —X—R4 and —Y—R5 are selected from the same moieties, for example, —X—R4 is
and —Y—R5 is
In some embodiments, —X—R4 and —Y—R5 are each —O—CH3, —O—CH2CH3, —O—CH2Ph, —OPh,
In some embodiments, for a compound of Formula (I), (I-A), (I-B) (I-C), (I-D), (I-E), or (II), —X—R4 is selected from: —OH, —OCH3, —OCH2CH3, —OCH2Ph, —OPh,
and —Y—R5 is selected from —OCH3, —OCH2CH3, —OCH2Ph, —OPh,
In some embodiments, for a compound of Formula (I), (I-A), (I-B) (I-C), (I-D), (I-E), or (II), W1 is selected from N and CR6; W3 is N; W4 is C; W5 is N; W6 is CH; R1 is selected from hydrogen and C1-4 alkyl; R3 is selected from halogen and —CN; and R16 is selected from halogen and —CN.
In some embodiments, for a compound of Formula (I), (I-A), (I-B) (I-C), (I-D), (I-E), or (II), X and Y are each —O—; and R4 and R5 are independently selected from —OC(═O)R8, —OC(═O)OR8, —OC(═O)OR8OC(═O)R8, —OC(═O)OR8OC(═O)OR8, and —OC(═O)OR8OC(O═)R8OC(═O)R8, or R4 and R5 are taken together with the atoms to which they are attached to form a C3-20 carbocycle or 3- to 20-membered heterocycle, each of which is optionally substituted with one or more R7. In some embodiments, this is accomplished via olefin metathesis, wherein both R4 and R5 bear an allyl group, are joined to form a cyclic alkene, and reduced to form a linear unsaturated alkyl group joining R4 and R5.
In some embodiments, for a compound of Formula (I), (I-A), (I-B) (I-C), (I-D), (I-E), or (II):
In some embodiments, for a compound of Formula (I), (I-A), (I-B) (I-C), (I-D), (I-E), or (II), —X—R4 is selected from —OH, —OCH3, —OCH2CH3, —OCH2Ph, —OPh,
and —Y—R5 is selected from —OH, —OCH3, —OCH2CH3, —OCH2Ph, —OPh,
In some embodiments, a compound of Formula (I), (I-A), (I-B) (I-C), (I-D), (I-E), or (II) may be a prodrug, e.g., wherein a phosphonic acid in the parent compound is presented as an ester, or carboxylic acid present in the parent compound is presented as an ester. The term “prodrug” is intended to encompass compounds which, under physiologic conditions, are converted into pharmaceutical agents, i.e., parent compound, of the present disclosure. One method for making a prodrug is to include one or more selected moieties which are hydrolyzed under physiologic conditions to reveal the desired molecule. In other embodiments, the prodrug is converted by an enzymatic activity of the host animal such as specific target cells in the host animal. For example, esters or carbonates (e.g., esters or carbonates of alcohols or carboxylic acids and esters of phosphonic acids) are preferred prodrugs of the present disclosure.
In certain aspects, the present disclosure provides a compound of Formula (III):
or a pharmaceutically acceptable salt thereof, wherein:
In some embodiments, a compound of Formula (III) is represented by a compound of Formula (III-A), Formula (III-B) or Formula (III-C):
In some embodiments, for a compound of any one of Formulae (III), (III-A), (III-B) and (III-C), R1 is hydrogen. In some other embodiments, R1 is C1-4 alkyl. In a further embodiment, R1 is methyl.
In some embodiments, for a compound of any one of Formulae (III), (III-A), (III-B) and (III-C), R2 is C3-12 carbocycle. In a further embodiment, R2 is C4-6 cycloalkyl, optionally substituted with one or more fluoros. Particular examples of C4-6 cycloalkyl include, but are not limited to, the followings:
In some embodiments, for a compound of any one of Formulae (III), (III-A), (III-B) and (III-C), R1 and R2 are taken together with the nitrogen atom to which they are attached to form a 4- to 6-membered heterocycle. Particular examples of 4- to 6-membered heterocycle include, but are not limited to, the followings:
wherein each of the 4- to 6-membered heterocycle is optionally substituted with one or more R7. In a further embodiment, R7 is fluoro. Particular examples of fluorinated 4- to 6-membered heterocycles include, but are not limited to, the followings:
In some embodiments, for a compound of any one of Formulae (III), (III-A), (III-B) and (III-C), R2 is benzyl or —(C1-4 alkyl)pyridyl, wherein the benzyl or —(C1-4 alkyl)pyridyl is optionally substituted with one or more R7. Particular examples of benzyl or —(C1-4 alkyl)pyridyl include, but not limited to, the followings:
wherein each of benzyl or —(C1-4 alkyl)pyridyl is optionally substituted with one or more R7. In a further embodiment, R7 is —CN or fluoro.
In some embodiments, for a compound of any one of Formulae (III), (III-A), (III-B) and (III-C),
is selected from the group consisting of:
In a further embodiment, R1 is hydrogen.
In some embodiments, for a compound of any one of Formulae (III), (III-A), (III-B) and (III-C), R3 is halogen. In a further embodiment, R3 is chloro. In some other embodiments, R3 is —CN.
In some embodiments, for a compound of any one of Formulae (III), (III-A), (III-B) and (III-C), R16 is halogen. In a further embodiment, R16 is chloro. In some other embodiments, R16 is —CN.
In some embodiments, for a compound of any one of Formulae (III), (III-A), (III-B) and (III-C), R13 is hydrogen. In some other embodiments, R13 is fluoro.
In some embodiments, for a compound of any one of Formulae (III), (III-A), (III-B) and (III-C), R17 is hydrogen. In some other embodiments, R17 is —OH.
In some embodiments, for a compound of any one of Formulae (III), (III-A), (III-B) and (III-C), R3 is halogen and R16 is —CN. In a further embodiment, R3 is chloro, R1 is hydrogen or C1-4 alkyl and R2 is C4-6 cycloalkyl, wherein said C4-6 cycloalkyl is optionally substituted with one ore more fluoros. Particular examples of C4-6 cycloalkyl include, but are not limited to, the followings:
In another further embodiment, R3 is chloro, R1 and R2 are taken together with the nitrogen atom to which they are attached to form a 4- to 6-membered heterocycle. Particular examples of 4- to 6-membered heterocycle include, but are not limited to, the followings:
wherein each of the 4- to 6-membered heterocycle is optionally substituted with one or more R7. In a further embodiment, R7 is fluoro. Particular examples of fluorinated 4- to 6-membered heterocycles include, but are not limited to, the followings:
In some embodiments, for a compound of any one of Formulae (III), (III-A), (III-B) and (III-C), R3 is —CN and R16 is halogen. In a further embodiment, R16 is chloro, R1 is hydrogen or C1-4 alkyl and R2 is C4-6 cycloalkyl, wherein said C4-6 cycloalkyl is optionally substituted with one ore more fluoros. Particular examples of C4-6 cycloalkyl include, but are not limited to, the followings:
In another further embodiment, R16 is chloro, R1 and R2 are taken together with the nitrogen atom to which they are attached to form a 4- to 6-membered heterocycle. Particular examples of 4- to 6-membered heterocycle include, but are not limited to, the followings:
wherein each of the 4- to 6-membered heterocycle is optionally substituted with one or more R7. In a further embodiment, R7 is fluoro. Particular examples of fluorinated 4- to 6-membered heterocycles include, but are not limited to, the followings:
In some embodiments, for a compound of any one of Formulae (III), (III-A), (III-B) and (III-C), R3 is chloro, R16 is —CN, R1 is hydrogen or C1-4 alkyl and R2 is C4-6 cycloalkyl, wherein said C4-6 cycloalkyl is optionally substituted with one ore more fluoros. Particular examples of C4-6 cycloalkyl include, but are not limited to, the followings:
In a further embodiment, R1 is hydrogen, R13 is hydrogen and R17 is —OH. In another further embodiment, R1 is hydrogen, R13 is fluoro and R17 is hydrogen.
In some embodiments, for a compound of any one of Formulae (III), (III-A), (III-B) and (III-C), R3 is chloro and R16 is —CN, R1 and R2 are taken together with the nitrogen atom to which they are attached to form a 4- to 6-membered heterocycle. Particular examples of 4- to 6-membered heterocycle include, but are not limited to, the followings:
wherein each of the 4- to 6-membered heterocycle is optionally substituted with one or more R7. In a further embodiment, R7 is fluoro. Particular examples of fluorinated 4- to 6-membered heterocycles include, but are not limited to, the followings:
In a still further embodiment, R13 is hydrogen and R17 is —OH. In another still further embodiment, R13 is fluoro and R17 is hydrogen.
In some embodiments, for a compound of any one of Formulae (III), (III-A), (III-B) and (III-C), R3 is chloro, R16 is —CN, and
is selected from the followings:
In a further embodiment, R13 is hydrogen and R17 is —OH. In another still further embodiment, R13 is fluoro and R17 is hydrogen.
In some embodiments, for a compound of any one of Formulae (III), (III-A), (III-B) and (III-C), R3 is —CN, R16 is chloro, R1 is hydrogen or C1-4 alkyl and R2 is C4-6 cycloalkyl, wherein said C4-6 cycloalkyl is optionally substituted with one or more fluoros. Particular examples of C4-6 cycloalkyl include, but are not limited to, the followings:
In a further embodiment, R13 is hydrogen and R17 is —OH. In another further embodiment, R13 is fluoro and R17 is hydrogen.
In some embodiments, for a compound of any one of Formulae (III), (III-A), (III-B) and (III-C), R3 is —CN and R16 is chloro, R1 and R2 are taken together with the nitrogen atom to which they are attached to form a 4- to 6-membered heterocycle. Particular examples of 4- to 6-membered heterocycle include, but are not limited to, the followings:
wherein each of the 4- to 6-membered heterocycle is optionally substituted with one or more R7. In a further embodiment, R7 is fluoro. Particular examples of fluorinated 4- to 6-membered heterocycle are selected from the group consisting of the followings:
In a still further embodiment, R13 is hydrogen and R17 is —OH. In another still further embodiment, R13 is fluoro and R17 is hydrogen.
In some embodiments, for a compound of any one of Formulae (III), (III-A), (III-B) and (III-C), R3 is —CN, R16 is chloro, and
is selected from the followings:
In a further embodiment, R13 is hydrogen and R17 is —OH. In another still further embodiment, R13 is fluoro and R17 is hydrogen.
In some embodiments, for a compound of any one of Formulae (III), (III-A), (III-B) and (III-C), R3 is halogen and R16 is —CN. In a further embodiment, R3 is chloro, R1 is hydrogen or C1-4 alkyl and R2 is benzyl or —(C1-4 alkyl)pyridyl, wherein the benzyl or —(C1-4 alkyl)pyridyl is optionally substituted with one ore more R7. Particular examples of benzyl or (C1-4 alkyl)pyridyl include, but are not limited to, the followings:
wherein each of benzyl or —(C1-4 alkyl)pyridyl is optionally substituted with one or more R7. In a further embodiment, R7 is fluoro or —CN.
In some embodiments, for a compound of any one of Formulae (III), (III-A), (III-B) and (III-C), R3 is chloro and R16 is —CN, R1 is hydrogen or C1-4 alkyl and R2 is benzyl or —(C1-4 alkyl)pyridyl, wherein the benzyl or —(C1-4 alkyl)pyridyl is optionally substituted with one or more R7. Particular examples of benzyl or —(C1-4 alkyl)pyridyl include, but are not limited to, the followings:
wherein each of benzyl or —(C1-4 alkyl)pyridyl is optionally substituted with one or more R7. In a further embodiment, R1 is hydrogen, R13 is hydrogen and R17 is —OH. In a still further embodiment, R7 is fluoro or —CN. In another further embodiment, R1 is hydrogen, R13 is fluoro and R17 is hydrogen. In a still further embodiment, R7 is fluoro or —CN.
In some embodiments, for a compound of any one of Formulae (III), (III-A), (III-B) and (III-C), R3 is —CN and R16 is halogen. In a further embodiment, R16 is chloro, R1 is hydrogen or C1-4 alkyl and R2 is benzyl or —(C1-4 alkyl)pyridyl, wherein the benzyl or —(C1-4 alkyl)pyridyl is optionally substituted with one or more R7. Particular examples of benzyl or (C1-4 alkyl)pyridyl include, but are not limited to, the followings:
wherein each of benzyl or —(C1-4 alkyl)pyridyl is optionally substituted with one or more R7. In a further embodiment, R7 is fluoro or —CN.
In some embodiments, for a compound of any one of Formulae (III), (III-A), (III-B) and (III-C), R3 is —CN and R16 is chloro, R1 is hydrogen or C1-4 alkyl and R2 is benzyl or (C1-4 alkyl)pyridyl, wherein the benzyl or —(C1-4 alkyl)pyridyl is optionally substituted with one or more R7. Particular examples of benzyl or —(C1-4 alkyl)pyridyl include, but are not limited to, the followings:
wherein each of benzyl or —(C1-4 alkyl)pyridyl is optionally substituted with one or more R7. In a further embodiment, R13 is hydrogen and R17 is —OH. In a still further embodiment, R7 is fluoro or —CN. In another further embodiment, R13 is fluoro and R17 is hydrogen. In a still further embodiment, R7 is fluoro or —CN.
In certain aspects, the present invention provides a compound of Formula (IV):
R4 and R5 are independently selected from hydrogen and
In some embodiments, a compound of Formula (IV) is represented by a compound of Formula (IV-A), Formula (IV-B) or Formula (IV-C):
In some embodiments, for a compound of any one of Formulae (IV), (IV-A), (IV-B) and (IV-C), R1 is hydrogen. In some other embodiments, R1 is C1-4 alkyl. In a further embodiment, R1 is methyl.
In some embodiments, for a compound of any one of Formulae (IV), (IV-A), (IV-B) and (IV-C), R2 is C3-12 carbocycle. Particular examples of C3-12 carbocycle include, but are not limited to, the followings:
wherein each of the C3-12 carbocycle is optionally substituted with one or more R7. In a further embodiment, R7 is fluoro. In another further embodiment, R2 is C4-6 cycloalkyl, optionally substituted with one or more fluoros. Particular examples of fluorinated C4-6 cycloalkyl include, but are not limited to, the followings:
In some embodiments, for a compound of any one of Formulae (IV), (IV-A), (IV-B) and (IV-C), R1 and R2 are taken together with the nitrogen atom to which they are attached to form a 4- to 6-membered heterocycle. Particular examples of 4- to 6-membered heterocycle include, but are not limited to, the followings:
wherein each of the 4- to 6-membered heterocycle is optionally substituted with one or more R7. In a further embodiment, R7 is halo, in particular fluoro. Particular examples of fluorinated 4- to 6-membered heterocycles include, but are not limited to, the followings:
In some embodiments, for a compound of any one of Formulae (IV), (IV-A), (M-B) and (III-C), R2 is benzyl or —(C1-4 alkyl)pyridyl, wherein the benzyl or —(C1-4 alkyl)pyridyl is optionally substituted with one or more R7. Particular examples of benzyl or —(C1-4 alkyl)pyridyl include, but are not limited to, the followings:
wherein each of benzyl or —(C1-4 alkyl)pyridyl is optionally substituted with one or more R7. In a further embodiment, R7 is halo or —CN. In a still further embodiment, R7 is fluoro.
In some embodiments, for a compound of any one of Formulae (IV), (IV-A), (IV-B) and (IV-C),
is selected from the group consisting of:
In some embodiments, for a compound of any one of Formulae (IV), (IV-A), (IV-B) and (IV-C), R3 is halogen. In a further embodiment, R3 is chloro. In some other embodiments, R3 is —CN.
In some embodiments, for a compound of any one of Formulae (IV), (IV-A), (IV-B) and (IV-C), R16 is halogen. In a further embodiment, R16 is chloro. In some other embodiments, R16 is —CN.
In some embodiments, for a compound of any one of Formulae (IV), (IV-A), (IV-B) and (IV-C), R13 is hydrogen. In some other embodiments, R13 is fluoro.
In some embodiments, for a compound of any one of Formulae (IV), (IV-A), (IV-B) and (IV-C), R17 is hydrogen. In some other embodiments, R17 is —OH.
In some embodiments, for a compound of any one of Formulae (IV), (IV-A), (IV-B) and (IV-C), R4 and R5 are hydrogen. In some other embodiments, R4 is
and R5 is hydrogen. In a further embodiment, R21 is unsubstituted C1-18 alkyl. In some other embodiments, R4 and R5 are each
In a further embodiment, R21 is selected from the group consisting of:
wherein n is selected from 1 to 17 inclusive.
In some embodiments, for a compound of any one of Formulae (IV), (IV-A), (IV-B) and (IV-C), R3 is halogen and R16 is —CN. In a further embodiment, R3 is chloro, R1 is hydrogen or C1-4 alkyl and R2 is C4-6 cycloalkyl, wherein the C4-6 cycloalkyl is optionally substituted with one or more fluoros. Particular examples of C4-6 cycloalkyl include, but are not limited to, the followings:
In another further embodiment, R3 is chloro, R1 and R2 are taken together with the nitrogen atom to which they are attached to form a 4- to 6-membered heterocycle. Particular examples of 4- to 6-membered heterocycle include, but are not limited to, the followings:
wherein each of the 4- to 6-membered heterocycle is optionally substituted with one or more R7. In a still further embodiment, R7 is halo, in particular fluoro. Particular examples of fluorinated 4- to 6-membered heterocycles include, but are not limited to, the followings:
In some embodiments, for a compound of any one of Formulae (IV), (IV-A), (IV-B) and (IV-C), R3 is —CN and R16 is halogen. In a further embodiment, R16 is chloro, R1 is hydrogen or C1-4 alkyl and R2 is C4-6 cycloalkyl, wherein said C4-6 cycloalkyl is optionally substituted with one ore more fluoros. Particular examples of C4-6 cycloalkyl include, but are not limited to, the followings:
In another further embodiment, R16 is chloro, R1 and R2 are taken together with the nitrogen atom to which they are attached to form a 4- to 6-membered heterocycle. Particular examples of 4- to 6-membered heterocycle include, but are not limited to, the followings:
wherein each of the 4- to 6-membered heterocycle is optionally substituted with one or more R7. In a still further embodiment, R7 is halo, in particular fluoro. Particular examples of fluorinated 4- to 6-membered heterocycles include, but are not limited to, the followings:
In some embodiments, for a compound of any one of Formulae (IV), (IV-A), (IV-B) and (IV-C), R3 is chloro, R16 is —CN, R1 is hydrogen or C1-4 alkyl and R2 is C4-6 cycloalkyl, wherein the C4-6 cycloalkyl is optionally substituted with one or more fluoros. Particular examples of C4-6 cycloalkyl include, but are not limited to, the followings:
In a further embodiment, R13 is hydrogen and R17 is —OH. In another further embodiment, R13 is fluoro and R17 is hydrogen.
In some embodiments, for a compound of any one of Formulae (IV), (IV-A), (IV-B) and (IV-C), R3 is chloro, R16 is —CN, R1 is hydrogen or C1-4 alkyl, R2 is C4-6 cycloalkyl, R13 is hydrogen, R17 is —OH, R4 is
and R5 is hydrogen, wherein the C4-6 cycloalkyl is optionally substituted with one or more fluoros. Particular examples of C4-6 cycloalkyl include, but are not limited to, the followings:
In a further embodiment, R1 is hydrogen and R21 is unsubstituted C1-18 alkyl. In another further embodiment, R1 is C1-4 alkyl and R21 is unsubstituted C1-18 alkyl.
In some embodiments, for a compound of any one of Formulae (IV), (IV-A), (IV-B) and (IV-C), R3 is chloro, R16 is —CN, R1 is hydrogen or C1-4 alkyl, R2 is C4-6 cycloalkyl, R13 is hydrogen, R17 is —OH, and R4 and R5 are each
wherein the C4-6 cycloalkyl is optionally substituted with one or more fluoros. Particular examples of C4-6 cycloalkyl include, but are not limited to, the followings:
In a further embodiment, R1 is hydrogen or C1-4 alkyl and R21 is selected from the group consisting of:
wherein n is selected from 1 to 17 inclusive.
In some embodiments, for a compound of any one of Formulae (IV), (IV-A), (IV-B) and (IV-C), R3 is chloro, R16 is —CN, R1 is hydrogen or C1-4 alkyl, R2 is C4-6 cycloalkyl, R13 is hydrogen, R17 is —OH, and R4 and R5 are each hydrogen, wherein the C4-6 cycloalkyl is optionally substituted with one or more fluoros. Particular examples of C4-6 cycloalkyl include, but are not limited to, the followings:
In a further embodiment, R1 is hydrogen. In another further embodiment, R1 is C1-4 alkyl.
In some embodiments, for a compound of any one of Formulae (IV), (IV-A), (IV-B) and (IV-C), R3 is halogen and R16 is —CN, R1 and R2 are taken together with the nitrogen atom to which they are attached to form a 4- to 6-membered heterocycle. Particular examples of 4- to 6-membered heterocycle include, but are not limited to, the followings:
wherein each of the 4- to 6-membered heterocycle is optionally substituted with one or more R7, such as halo, in particular fluoro. Particular examples of fluorinated 4- to 6-membered heterocycles include, but are not limited to, the followings:
In a further embodiment, R3 is chloro, R13 is hydrogen and R17 is —OH. In another further embodiment, R3 is chloro, R13 is fluoro and R17 is hydrogen.
In some embodiments, for a compound of any one of Formulae (IV), (IV-A), (IV-B) and (IV-C), R3 is halogen, R16 is —CN, R1 is hydrogen or C1-4 alkyl and R2 is C4-6 cycloalkyl, wherein the C4-6 cycloalkyl is optionally substituted with one or more fluoros. Particular examples of C4-6 cycloalkyl include, but are not limited to, the followings:
In a further embodiment, R3 is chloro, R13 is hydrogen and R17 is —OH. In another further embodiment, R3 is chloro, R13 is fluoro and R17 is hydrogen.
In some embodiments, for a compound of any one of Formulae (IV), (IV-A), (IV-B) and (IV-C), R3 is —CN, R16 is halogen, R1 is hydrogen or C1-4 alkyl and R2 is C4-6 cycloalkyl, wherein the C4-6 cycloalkyl is optionally substituted with one or more fluoros. Particular examples of C4-6 cycloalkyl include, but are not limited to, the followings:
In a further embodiment, R16 is chloro, R13 is hydrogen and R17 is —OH. In another further embodiment, R16 is chloro, R13 is fluoro and R17 is hydrogen.
In some embodiments, for a compound of any one of Formulae (IV), (IV-A), (IV-B) and (IV-C), R3 is —CN and R16 is halogen, R1 and R2 are taken together with the nitrogen atom to which they are attached to form a 4- to 6-membered heterocycle. Particular examples of 4- to 6-membered heterocycle include, but are not limited to, the followings:
wherein each of the 4- to 6-membered heterocycle is optionally substituted with one or more R7, such as halo, in particular fluoro. Particular examples of fluorinated 4- to 6-membered heterocycles include, but are not limited to, the followings:
In a further embodiment, R16 is chloro, R13 is hydrogen and R17 is —OH. In another further embodiment, R16 is chloro, R13 is fluoro and R17 is hydrogen.
In some embodiments, for a compound of any one of Formulae (IV), (IV-A), (IV-B) and (IV-C), R3 is halogen and R16 is —CN. In a further embodiment, R3 is chloro, R1 is hydrogen or C1-4 alkyl and R2 is benzyl or —(C1-4 alkyl)pyridyl, wherein the benzyl or —(C1-4 alkyl)pyridyl is optionally substituted with one or more R7. Particular examples of benzyl or —(C1-4 alkyl)pyridyl include, but are not limited to, the followings:
wherein each of benzyl or —(C1-4 alkyl)pyridyl is optionally substituted with one or more R7. In a further embodiment, R7 is fluoro or —CN.
In some embodiments, for a compound of any one of Formulae (IV), (IV-A), (IV-B) and (IV-C), R3 is chloro and R16 is —CN, R1 is hydrogen or C1-4 alkyl and R2 is benzyl or —(C1-4 alkyl)pyridyl, wherein the benzyl or —(C1-4 alkyl)pyridyl is optionally substituted with one or more R7. Particular examples of benzyl or —(C1-4 alkyl)pyridyl include, but are not limited to, the followings:
wherein each of benzyl or —(C1-4 alkyl)pyridyl is optionally substituted with one or more R7, in particular fluoro or —CN. In a further embodiment, R13 is hydrogen and R17 is —OH. In another further embodiment, R13 is fluoro and R17 is hydrogen.
In some embodiments, for a compound of any one of Formulae (IV), (IV-A), (IV-B) and (IV-C), R3 is —CN and R16 is halogen. In a further embodiment, R16 is chloro, R1 is hydrogen or C1-4 alkyl and R2 is benzyl or —(C1-4 alkyl)pyridyl, wherein the benzyl or —(C1-4 alkyl)pyridyl is optionally substituted with one or more R7. Particular examples of benzyl or —(C1-4 alkyl)pyridyl include, but are not limited to, the followings:
wherein each of benzyl or —(C1-4 alkyl)pyridyl is optionally substituted with one or more R7. In a further embodiment, R7 is fluoro or —CN.
In some embodiments, for a compound of any one of Formulae (III), (III-A), (III-B) and (III-C), R3 is —CN and R16 is chloro, R1 is hydrogen or C1-4 alkyl and R2 is benzyl or —(C1-4 alkyl)pyridyl, wherein the benzyl or —(C1-4 alkyl)pyridyl is optionally substituted with one or more R7. Particular examples of benzyl or —(C1-4 alkyl)pyridyl include, but are not limited to, the followings:
wherein each of benzyl or —(C1-4 alkyl)pyridyl is optionally substituted with one or more R7. In a further embodiment, R7 is fluoro or —CN. In another further embodiment, R13 is hydrogen and R17 is —OH. In yet another further embodiment, R13 is fluoro and R17 is hydrogen.
In some embodiments, for a compound of any one of Formulae (III), (III-A), (III-B) and (III-C), R3 is halogen and R16 is —CN, R1 is hydrogen or C1-4 alkyl, R2 is benzyl or —(C1-4 alkyl)pyridyl, and R4 and R5 are each hydrogen, wherein the benzyl or —(C1-4 alkyl)pyridyl is optionally substituted with one or more R7. Particular examples of benzyl or —(C1-4 alkyl)pyridyl include, but are not limited to, the followings:
wherein each of benzyl or —(C1-4 alkyl)pyridyl is optionally substituted with one or more R7. In a further embodiment, R7 is fluoro or —CN. In another further embodiment, R13 is hydrogen and R17 is —OH. In yet another further embodiment, R13 is fluoro and R17 is hydrogen.
In some embodiments, for a compound of any one of Formulae (III), (III-A), (III-B) and (III-C), R3 is halogen, R16 is —CN, R1 is hydrogen or C1-4 alkyl, R2 is benzyl or —(C1-4alkyl)pyridyl, R4 is
R5 is hydrogen, R13 is hydrogen and R17 is —OH, wherein the benzyl or —(C1-4 alkyl)pyridyl is optionally substituted with one or more R7. Particular examples of benzyl or —(C1-4 alkyl)pyridyl include, but are not limited to, the followings:
wherein each of benzyl or —(C1-4 alkyl)pyridyl is optionally substituted with one or more R7. In a further embodiment, R7 is fluoro or —CN. In another further embodiment, R3 is chloro, R21 is unsubstituted C1-18 alkyl and R22 is hydrogen. In yet another further embodiment, R3 is chloro, R21 is unsubstituted C1-18 alkyl and R22 is C1-4 alkyl.
In some embodiments, for a compound of any one of Formulae (III), (III-A), (III-B) and (III-C), R3 is halogen, R16 is —CN, R1 is hydrogen or C1-4 alkyl, R2 is benzyl or —(C1-4 alkyl)pyridyl, R4 and R5 are each
R13 is R17 hydrogen and is —OH, wherein the benzyl or —(C1-4 alkyl)pyridyl is optionally substituted with one or more R7. Particular examples of benzyl or —(C1-4 alkyl)pyridyl include, but are not limited to, the followings:
wherein each of benzyl or —(C1-4 alkyl)pyridyl is optionally substituted with one or more R7. In a further embodiment, R7 is fluoro or —CN. In another further embodiment, R3 is chloro, R22 is hydrogen and R21 is selected from the group consisting of:
wherein n is selected from 1-17 inclusive.
In yet another further embodiment, R3 is chloro, R22 is C1-4 alkyl and R21 is selected from the group consisting of:
wherein n is selected from 1-17 inclusive.
In some embodiments, for a compound of any one of Formulae (III), (III-A), (III-B) and (III-C), R3 is halogen, R16 is —CN, R1 is hydrogen or C1-4 alkyl, R2 is benzyl or —(C1-4 alkyl)pyridyl, R4 and R5 are each hydrogen, R13 is hydrogen and R17 is —OH, wherein the benzyl or —(C1-4 alkyl)pyridyl is optionally substituted with one or more R7. Particular examples of benzyl or —(C1-4 alkyl)pyridyl include, but are not limited to, the followings:
wherein each of benzyl or —(C1-4 alkyl)pyridyl is optionally substituted with one or more R7. In a further embodiment, R7 is fluoro or —CN. In another further embodiment, R3 is chloro and R22 is hydrogen. In yet another further embodiment, R3 is chloro and R22 is C1-4 alkyl.
Phosphonic acids are typically ionized at physiological pH (6.5-7.4). Molecules containing this group may be highly charged, and thus may have poor oral bioavailability due to poor cell permeability. Prodrugs may overcome poor cell permeability of phosphonic acids to achieve oral bioavailability (see, e.g., Hecker and Erion, J. Med. Chem. 2008, 51, 2328, incorporated herein by reference). One or more cleavable masking group(s) may be attached to a phosphonic acid moiety to mask the charge of the acid at physiological pH, improving the cell permeability and oral bioavailability of the molecule. Upon entering systemic circulation, the masking group(s) are cleaved, releasing the phosphonic acid. Cleavable/masking groups include, but are not limited to: acyloxyalkyl diesters, alkyloxycarbonyloxyalkyl diesters, acyloxyalkyl monoesters, alkyloxycarbonyloxyalkyl monoesters, cyclic 1-aryl-1,3-propanyl esters, phosphonic diamides, phosphonic monoamides, benzyl esters, aryl phosphonamidates, dioxolenones, S-acylthioethyl esters, aryl esters, lipid esters, nitrofuranylmethyl amidates, and cyclosaligenyl prodrugs.
In some embodiments, for a compound of any one of Formulae (I), (I-A), (I-B) (I-C), (I-D), (I-E), (II), (III), (III-A), (III-B), (III-C), (IV), (IV-A), (IV-B) and (IV-C), a substantially pure stereoisomer is provided. The stereoisomer may be provided in at least 90% diastereomeric excess. In some embodiments, a compound of any one of Formulae (I), (I-A), (I-B) (I-C), (I-D), (I-E), (II), (III), (III-A), (III-B), (III-C), (IV), (IV-A), (IV-B) and (IV-C) may have an diastereomeric excess of at least about 80%, at least about 81%, at least about 82%, at least about 83%, at least about 84%, at least about 85%, at least about 86%, at least about 87%, at least about 88%, at least about 89%, at least about 90%, at least about 91%, at least about 92%, at least about 93%, at least about 94%, at least about 95%, at least about 96%, at least about 97%, at least about 98%, or even higher. In some embodiments, a compound of any one of Formulae (I), (I-A), (I-B), (I-C), (I-D), (I-E), (II), (III), (III-A), (III-B), (III-C), (IV), (IV-A), (IV-B) and (IV-C) may have a diastereomeric excess of about 80%, about 81%, about 82%, about 83%, about 84%, about 85%, about 86%, about 87%, about 88%, about 89%, about 90%, about 91%, about 92%, about 93%, about 94%, about 95%, about 96%, about 97%, about 98% or about 99%.
In certain aspects, the present disclosure provides a method of preparing a compound of Formula (V):
Comprising:
(c) oxidation of a compound of Formula (C) to give a compound of Formula (D)
In some embodiments, R2′ is unsubstituted C1-18 alkyl or unsubstituted C3-6 cycloalkyl.
In some embodiments, for step (b), the alkylation is carried out in the presence of an inorganic base. Particular examples of inorganic base include, but are not limited to, cesium carbonate, cesium bicarbonate, sodium carbonate, sodium bicarbonate, potassium carbonate, potassium bicarbonate, potassium phosphate, potassium hydrogen phosphate, magnesium t-butoxide and silver(I) oxide. In some other embodiments, the alkylation is carried out in the presence of an organic base. Particular examples of organic base include, but are not limited to, triethylamine, diisopropylethylamine, Dabco®, 1,5-Diazabicyclo[4.3.0]non-5-ene, Diazabicyclo[5.4.0]undec-7-ene, pyridine and 2,6-lutidine.
In some embodiments, for step (c), the oxidation is carried out with a reagent selected from hydrogen peroxide, Oxone®, and m-CPBA. In a further embodiment, the oxidation is carried out with Oxone®. In another further embodiment, the oxidation is carried out with m-CPBA.
The chemical entities described herein can be synthesized according to one or more illustrative schemes herein and/or techniques known in the art. Materials used herein are either commercially available or prepared by synthetic methods generally known in the art. These schemes are not limited to the compounds listed in the examples or by any particular substituents, which are employed for illustrative purposes. Although various steps are described and depicted in Schemes 1-7, the steps in some cases may be performed in a different order than the order shown in Schemes 1-7. Various modifications to these synthetic reaction schemes may be made and will be suggested to one skilled in the art having referred to the disclosure contained in this Application. Numberings or R groups in each scheme do not necessarily correspond to that of the claims or other schemes or tables herein.
Unless specified to the contrary, the reactions described herein take place at atmospheric pressure, generally within a temperature range from −10° C. to 200° C. Further, except as otherwise specified, reaction times and conditions are intended to be approximate, e.g., taking place at about atmospheric pressure within a temperature range of about −10° C. to about 110° C. over a period of about 1 to about 24 hours; reactions left to run overnight average a period of about 16 hours.
In some embodiments, compounds of the invention may be prepared by the following reaction schemes:
In some embodiments, a compound of Formula 1-5 may be prepared according to steps outlined in Scheme 1. For example, reaction of compound 1-1 with amine 1-2 (e.g., wherein R1 and R2 are alkyl or substituted alkyl) can provide intermediate 1-3. The reaction may be carried out in a suitable organic solvent in the presence of a base. Suitable bases for the reaction include, but are not limited to, organic bases, for example, triethylamine, N,N-dii sopropylethylamine, 1,4-diazabicyclo[2.2.2]octane, and inorganic bases, for example, cesium bicarbonate, cesium carbonate, sodium carbonate, and potassium carbonate. Compound 1-3 may be alkylated with a suitable alkylation reagent to give compound 1-4. Elevated temperature may be needed for the alkylation to occur. The temperature may be in a range of 50° C. to 100° C. Further substitution and hydrolysis of compound 1-4 can be carried out to afford phosphonic acid 1-5.
Alternatively, a compound of Formula 2-4 may be prepared according to steps outlined in Scheme 2. Alkylation of compound 2-1 with a suitable alkylation reagent can provide phosphonate 2-2. At this stage, amine 1-2 may be introduced to give compound 2-3. Elevated temperature may be needed for the alkylation to occur. The temperature may be in a range of 80° C. to 120° C. Further substitution and hydrolysis of compound 2-3 can be carried out to afford compound 2-4.
In some embodiments, a compound of Formula 3-8 may be prepared according to steps outlined in Scheme 3. For example, reaction of compound 3-1 with amine 3-2 (e.g., wherein R1 and R2 are independently alkyl or substituted alkyl) can provide intermediate 3-3. The reaction may be carried out in a suitable organic solvent in the presence of a base. Suitable bases for the reaction include, but are not limited to, organic bases, such as triethylamine, N,N-diisopropylethylamine, 1,4-diazabicyclo[2.2.2]octane, and inorganic bases, such as cesium bicarbonate, cesium carbonate, sodium carbonate, and potassium carbonate. Alcohol 3-3 may be reacted with a suitable sulfonyl chloride to give compound 3-4. The sulfur atom of the linker may be introduced by reacting compound 3-4 with reagent 3-5 in the presence of a base, such as sodium ethoxide, to give thioether 3-6. Oxidation of thioether 3-6 with an oxidation reagent, such as Oxone®, affords sulfone 3-7. Further substitution and hydrolysis of compound 3-7 can be carried out to afford compound 3-8.
Alternatively, a compound of Formula 4-6 may be prepared according to steps outlined in Scheme 4. Thioacetate 4-1 may be prepared from compound 4-3 under standard Mitsuobu conditions or by displacing a sulfonate intermediate, e.g., compound 3-4, with potassium thioacetate. Alkylation of compound 4-1 with bromide 4-2 in the presence of a base, such as sodium isopropoxide, can provide phosphonate 4-6.
In some embodiments, a compound of Formula 5-5 may be prepared by the steps outlined in Scheme 5. For example, reaction of 5-1 with P,P′-methylenebis-phosphonic dichloride in the presence of a suitable base can provide intermediate 5-2. Reaction of intermediate 5-2 with amine 5-3 in the presence of base generates intermediate 5-4. Deprotection of 5-4 using strong acid, such as formic acid, yields compound 5-5.
In some embodiments, a compound of Formula 6-8 may be prepared by the steps outlined in Scheme 6. For example, treatment of 6-1 with bis(4-nitrophenyl)phosphinic acid in the presence of (2S,3R,4R,5R)-5-(acetoxymethyl)tetrahydrofuran-2,3,4-triyl triacetate yields intermediate 6-2. Treatment of 6-2 in the presence of base with amine 6-3 can then yield intermediate 6-4. Subsequent protection of 6-4 with 2,2-dimethoxy propane under acidic conditions can yield intermediate 6-5. Treatment of 6-5 with 1-(diethoxyphosphorylmethylsulfonyl)-4-methyl-benzene in the presence of a strong base, such as magnesium tertbutoxide, then can produce intermediate 6-6. Deprotection of the phosphonate hydroxyls of 6-6 using bromotrimethysilane can produce intermediate 6-7. Finally, deprotection of the ribose hydroxyls in strong acid, such as formic acid, can yield compound 6-8.
In some embodiments, a compound of Formula 7-10 may be prepared by the steps outlined in Scheme 7. Iodination of 7-1 can yield intermediate 7-2. Reaction of intermediate 7-2 with amine 7-3 in the presence of base can yield intermediate 7-4. Deprotection of 7-4 with TBAF can yield intermediate 7-5. Treatment of 7-5 with 1-(diethoxyphosphorylmethylsulfonyl)-4-methyl-benzene in the presence of a strong base, such as magnesium tert-butoxide, can yield compound 7-6. Treatment of 7-6 under Sonogashira coupling conditions with alkyne 7-7 can then yield intermediate 7-8. Deprotection of the phosphonate hydroxyls of 7-8 with bromotrimethylsilane can produce intermediate 7-9. Finally, deprotection with a strong acid, such as formic acid, yields compound 7-10.
In some embodiments, a compound of the present invention, for example a compound of a formula given in Table 1, is synthesized according to one of the general routes outlined in Schemes 1-7, Examples 1-43 or by methods generally known in the art.
Method of Use: In one aspect, the present invention provides a method for treating a proliferative disorder in a subject in need thereof, comprising administering to said subject a CD73 inhibitor. In some embodiments, the proliferative disorder is a cancer condition. In some further embodiments, said cancer condition is a cancer selected from the group consisting of leukemia, bladder cancer, glioma, glioblastoma, lung cancer, ovarian cancer, melanoma, prostate cancer, thyroid cancer, esophageal cancer, non-small cell lung cancer and breast cancer.
In a further embodiment, the present invention provides a method of treating a cancer condition, wherein the CD73 inhibitor is effective in one or more of inhibiting proliferation of cancer cells, inhibiting metastasis of cancer cells, reducing severity or incidence of symptoms associated with the presence of cancer cells, promoting an immune response to tumor cells, and suppressing hydrolysis of adenosine monophosphate into adenosine. In some embodiments, said method comprises administering to the cancer cells a therapeutically effective amount of a CD73 inhibitor. In some embodiments, the administration takes place in vitro. In other embodiments, the administration takes place in vivo.
As used herein, a therapeutically effective amount of a CD73 inhibitor refers to an amount sufficient to affect the intended application, including but not limited to, disease treatment, as defined herein. Also contemplated in the subject methods is the use of a sub-therapeutic amount of a CD73 inhibitor for treating an intended disease condition.
The amount of the CD73 inhibitor administered may vary depending upon the intended application (in vitro or in vivo), or the subject and disease condition being treated, e.g., the weight and age of the subject, the severity of the disease condition, the manner of administration and the like, which can readily be determined by one of ordinary skill in the art.
Measuring inhibition of biological effects of CD73 can comprise performing an assay on a biological sample, such as a sample from a subject. Any of a variety of samples may be selected, depending on the assay. Examples of samples include, but are not limited to blood samples (e.g. blood plasma or serum), exhaled breath condensate samples, bronchoalveolar lavage fluid, sputum samples, urine samples, and tissue samples.
A subject being treated with a CD73 inhibitor may be monitored to determine the effectiveness of treatment, and the treatment regimen may be adjusted based on the subject's physiological response to treatment. For example, if inhibition of a biological effect of CD73 inhibition is above or below a threshold, the dosing amount or frequency may be decreased or increased, respectively. The methods can further comprise continuing the therapy if the therapy is determined to be efficacious. The methods can comprise maintaining, tapering, reducing, or stopping the administered amount of a compound in the therapy if the therapy is determined to be efficacious. The methods can comprise increasing the administered amount of a compound in the therapy if it is determined not to be efficacious. Alternatively, the methods can comprise stopping therapy if it is determined not to be efficacious. In some embodiments, treatment with a CD73 inhibitor is discontinued if inhibition of the biological effect is above or below a threshold, such as in a lack of response or an adverse reaction. The biological effect may be a change in any of a variety of physiological indicators.
In general, a CD73 inhibitor is a compound that inhibits one or more biological effects of CD73. Examples of biological effects of CD73 include, but are not limited to, production of adenosine and suppression of T cell activation. Such biological effects may be inhibited by about or more than about 10%, 20%, 30%, 40%, 50%, 60%, 70%, 80%, 90%, 95%, or more.
In some other embodiments, the subject methods are useful for treating a disease condition associated with CD73. Any disease condition that results directly or indirectly from an abnormal activity or expression level of CD73 can be an intended disease condition. In some embodiments, the disease condition is a proliferative disorder, such as described herein, including but not limited to cancer. A role of CD73 in tumorigenesis and tumor progression has been implicated in many human cancers. Constitutive activation of CD73 is emerging as a common theme in diverse human cancers, consequently agents that target CD73 have therapeutic value.
The data presented in the Examples herein below demonstrate the anti-cancer effects of a CD73 inhibitor. As such, the subject method is particularly useful for treating a proliferative disorder, such as a neoplastic condition. Non-limiting examples of such conditions include but are not limited to acanthoma, acinic cell carcinoma, acoustic neuroma, acral lentiginous melanoma, acrospiroma, acute eosinophilic leukemia, acute lymphoblastic leukemia, acute megakaryoblastic leukemia, acute monocytic leukemia, acute myeloblastic leukemia with maturation, acute myeloid dendritic cell leukemia, acute myeloid leukemia, acute promyelocytic leukemia, adamantinoma, adenocarcinoma, adenoid cystic carcinoma, adenoma, adenomatoid odontogenic tumor, adrenocortical carcinoma, adult T-cell leukemia, aggressive NK-cell leukemia, AIDS-related cancers, AIDS-related lymphoma, alveolar soft part sarcoma, ameloblastic fibroma, anal cancer, anaplastic large cell lymphoma, anaplastic thyroid cancer, angioimmunoblastic T-cell lymphoma, angiomyolipoma, angiosarcoma, appendix cancer, astrocytoma, atypical teratoid rhabdoid tumor, basal cell carcinoma, basal-like carcinoma, B-cell leukemia, B-cell lymphoma, bellini duct carcinoma, biliary tract cancer, bladder cancer, blastoma, bone cancer, bone tumor, brain stem glioma, brain tumor, breast cancer, brenner tumor, bronchial tumor, bronchioloalveolar carcinoma, brown tumor, Burkitt's lymphoma, carcinoid tumor, carcinoma, carcinosarcoma, Castleman's disease, central nervous system embryonal tumor, cerebellar astrocytoma, cerebral astrocytoma, cervical cancer, cholangiocarcinoma, chondroma, chondrosarcoma, chordoma, choriocarcinoma, choroid plexus papilloma, chronic lymphocytic leukemia, chronic monocytic leukemia, chronic myelogenous leukemia, chronic myeloproliferative disorder, chronic neutrophilic leukemia, clear cell renal cell carcinoma, clear-cell tumor, colon cancer, colorectal cancer, craniopharyngioma, cutaneous T-cell lymphoma, dermatofibrosarcoma protuberans, dermoid cyst, desmoplastic small round cell tumor, diffuse large B cell lymphoma, dysembryoplastic neuroepithelial tumor, embryonal carcinoma, endodermal sinus tumor, endometrial cancer, endometrial uterine cancer, endometrioid tumor, enteropathy-associated T-cell lymphoma, ependymoblastoma, ependymoma, epithelioid sarcoma, erythroleukemia,esophageal cancer, esthesioneuroblastoma, Ewing's sarcoma, extracranial germ cell tumor, extragonadal germ cell tumor, extrahepatic bile duct cancer, extramammary Paget's disease, fallopian tube cancer, fibroma, fibrosarcoma, follicular lymphoma, follicular thyroid cancer, gallbladder cancer, ganglioglioma, ganglioneuroma, gastric cancer, gastric lymphoma, gastrointestinal cancer, gastrointestinal carcinoid tumor, gastrointestinal stromal tumor, germ cell tumor, germinoma, gestational choriocarcinoma, gestational trophoblastic tumor, giant cell tumor of bone, glioblastoma multiforme, glioma, gliomatosis cerebri, glomus tumor, glucagonoma, gonadoblastoma, granulosa cell tumor, hairy cell leukemia, head and neck cancer, heart cancer, hemangioblastoma, hemangiopericytoma, hemangiosarcoma, hematological malignancy, hepatocellular carcinoma, hepatosplenic T-cell lymphoma, Hodgkin lymphoma, hypopharyngeal cancer, hypothalamic glioma, inflammatory breast cancer, intraocular melanoma, islet cell carcinoma, juvenile myelomonocytic leukemia, Kaposi's sarcoma, kidney cancer, klatskin tumor, krukenberg tumor, laryngeal cancer, lentigo maligna melanoma, leukemia, lip and oral cavity cancer, liposarcoma, lung cancer, luteoma, lymphangioma, lymphangiosarcoma, lymphoepithelioma, lymphoid leukemia, lymphoma, macroglobulinemia, malignant fibrous histiocytoma, malignant glioma, malignant mesothelioma, malignant peripheral nerve sheath tumor, malignant rhabdoid tumor, malignant triton tumor, malt lymphoma, mantle cell lymphoma, mast cell leukemia, mediastinal germ cell tumor, mediastinal tumor, medullary thyroid cancer, medulloblastoma, medulloepithelioma, melanoma, meningioma, merkel cell carcinoma, mesothelioma, metastatic squamous neck cancer with occult primary, metastatic urothelial carcinoma, mixed mullerian tumor, monocytic leukemia, mouth cancer, mucinous tumor, multiple endocrine neoplasia syndrome, multiple myeloma, mycosis fungoides, myelodysplastic disease, myeloid leukemia, myeloid sarcoma, myeloproliferative disease, myxoma, nasal cavity cancer, nasopharyngeal cancer, neoplasm, neurinoma, neuroblastoma, neurofibroma, neuroma, nodular melanoma, non-Hodgkin lymphoma, nonmelanoma skin cancer, non-small cell lung cancer, ocular oncology, oligoastrocytoma, oligodendroglioma, oncocytoma, optic nerve sheath meningioma, oral cancer, oropharyngeal cancer, osteosarcoma, ovarian cancer, ovarian epithelial cancer, ovarian germ cell tumor, ovarian low malignant potential tumor, pancoast tumor, pancreatic cancer, papillary thyroid cancer, papillomatosis, paraganglioma, paranasal sinus cancer, parathyroid cancer, penile cancer, perivascular epithelioid cell tumor, pharyngeal cancer, pheochromocytoma, pineal parenchymal tumor of intermediate differentiation, pineoblastoma, pituicytoma, pituitary adenoma, pituitary tumor, plasma cell neoplasm, pleuropulmonary blastoma, polyembryoma, precursor T-lymphoblastic lymphoma, primitive neuroectodermal tumor, prostate cancer, pseudomyxoma peritonei, rectal cancer, renal cell carcinoma, retinoblastoma, rhabdomyoma, rhabdomyosarcoma, Richter's transformation, sacrococcygeal teratoma, salivary gland cancer, sarcoma, schwannomatosis, sebaceous gland carcinoma, secondary neoplasm, seminoma, serous tumor, Sertoli-Leydig cell tumor, sex cord-stromal tumor, sezary syndrome, signet ring cell carcinoma, skin cancer, small blue round cell tumor, small cell carcinoma, small cell lung cancer, small cell lymphoma, small intestine cancer, soft tissue sarcoma, somatostatinoma, soot wart, spinal tumor, splenic marginal zone lymphoma, squamous cell carcinoma, stomach cancer, superficial spreading melanoma, supratentorial primitive neuroectodermal tumor, surface epithelial-stromal tumor, synovial sarcoma, T-cell acute lymphoblastic leukemia, T-cell large granular lymphocyte leukemia, T-cell leukemia, T-cell lymphoma, T-cell prolymphocytic leukemia, teratoma, terminal lymphatic cancer, testicular cancer, thecoma, throat cancer, thymic carcinoma, thymoma, thyroid cancer, transitional cell cancer of renal pelvis and ureter, transitional cell carcinoma, urachal cancer, urethral cancer, urogenital neoplasm, uterine sarcoma, uveal melanoma, vaginal cancer, verner morrison syndrome, verrucous carcinoma, visual pathway glioma, vulvar cancer, Waldenstrom's macroglobulinemia, Warthin's tumor, Wilms' tumor or any combination thereof.
In some embodiments, the methods of administering a CD73 inhibitor described herein are applied to the treatment of cancers of the adrenal glands, blood, bone marrow, brain, breast, cervix, colon, head and neck, kidney, liver, lung, ovary, pancreas, plasma cells, rectum, retina, skin, spine, throat or any combination thereof.
Certain embodiments contemplate a human subject such as a subject that has been diagnosed as having or being at risk for developing or acquiring a proliferative disorder condition. Certain other embodiments contemplate a non-human subject, for example a non-human primate such as a macaque, chimpanzee, gorilla, vervet, orangutan, baboon or other non-human primate, including such non-human subjects that can be known to the art as preclinical models. Certain other embodiments contemplate a non-human subject that is a mammal, for example, a mouse, rat, rabbit, pig, sheep, horse, bovine, goat, gerbil, hamster, guinea pig or other mammal. There are also contemplated other embodiments in which the subject or biological source can be a non-mammalian vertebrate, for example, another higher vertebrate, or an avian, amphibian or reptilian species, or another subject or biological source. In certain embodiments of the present invention, a transgenic animal is utilized. A transgenic animal is a non-human animal in which one or more of the cells of the animal includes a nucleic acid that is non-endogenous (i.e., heterologous) and is present as an extrachromosomal element in a portion of its cell or stably integrated into its germ line DNA (i.e., in the genomic sequence of most or all of its cells).
Therapeutic Efficacy: In some embodiments, therapeutic efficacy is measured based on an effect of treating a proliferative disorder, such as cancer. In general, therapeutic efficacy of the methods and compositions of the invention, with regard to the treatment of a proliferative disorder (e.g. cancer, whether benign or malignant), may be measured by the degree to which the methods and compositions promote inhibition of tumor cell proliferation, the inhibition of tumor vascularization, the eradication of tumor cells, the reduction in the rate of growth of a tumor, and/or a reduction in the size of at least one tumor. Several parameters to be considered in the determination of therapeutic efficacy are discussed herein. The proper combination of parameters for a particular situation can be established by the clinician. The progress of the inventive method in treating cancer (e.g., reducing tumor size or eradicating cancerous cells) can be ascertained using any suitable method, such as those methods currently used in the clinic to track tumor size and cancer progress. The primary efficacy parameter used to evaluate the treatment of cancer by the inventive method and compositions preferably is a reduction in the size of a tumor. Tumor size can be figured using any suitable technique, such as measurement of dimensions, or estimation of tumor volume using available computer software, such as FreeFlight software developed at Wake Forest University that enables accurate estimation of tumor volume. Tumor size can be determined by tumor visualization using, for example, CT, ultrasound, SPECT, spiral CT, MRI, photographs, and the like. In embodiments where a tumor is surgically resected after completion of the therapeutic period, the presence of tumor tissue and tumor size can be determined by gross analysis of the tissue to be resected, and/or by pathological analysis of the resected tissue.
In some desirable embodiments, the growth of a tumor is stabilized (i.e., one or more tumors do not increase more than 1%, 5%, 10%, 15%, or 20% in size, and/or do not metastasize) as a result of the inventive method and compositions. In some embodiments, a tumor is stabilized for at least about 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, or more weeks. In some embodiments, a tumor is stabilized for at least about 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, or more months. In some embodiments, a tumor is stabilized for at least about 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, or more years. Preferably, the inventive method reduces the size of a tumor at least about 5% (e.g., at least about 10%, 15%, 20%, or 25%). More preferably, tumor size is reduced at least about 30% (e.g., at least about 35%, 40%, 45%, 50%, 55%, 60%, or 65%). Even more preferably, tumor size is reduced at least about 70% (e.g., at least about 75%, 80%, 85%, 90%, or 95%). Most preferably, the tumor is completely eliminated, or reduced below a level of detection. In some embodiments, a subject remains tumor free (e.g. in remission) for at least about 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, or more weeks following treatment. In some embodiments, a subject remains tumor free for at least about 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, or more months following treatment. In some embodiments, a subject remains tumor free for at least about 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, or more years after treatment.
In some embodiments, the efficacy of the inventive method in reducing tumor size can be determined by measuring the percentage of necrotic (i.e., dead) tissue of a surgically resected tumor following completion of the therapeutic period. In some further embodiments, a treatment is therapeutically effective if the necrosis percentage of the resected tissue is greater than about 20% (e.g., at least about 30%, 40%, 50%, 60%, 70%, 80%, 90%, or 100%), more preferably about 90% or greater (e.g., about 90%, 95%, or 100%). Most preferably, the necrosis percentage of the resected tissue is 100%, that is, no tumor tissue is present or detectable.
The efficacy of the inventive method can be determined by a number of secondary parameters. Examples of secondary parameters include, but are not limited to, detection of new tumors, detection of tumor antigens or markers (e.g., CEA, PSA, or CA-125), biopsy, surgical downstaging (i.e., conversion of the surgical stage of a tumor from unresectable to resectable), PET scans, survival, disease progression-free survival, time to disease progression, quality of life assessments such as the Clinical Benefit Response Assessment, and the like, all of which can point to the overall progression (or regression) of cancer in a human. Biopsy is particularly useful in detecting the eradication of cancerous cells within a tissue. Radioimmunodetection (RAID) is used to locate and stage tumors using serum levels of markers (antigens) produced by and/or associated with tumors (“tumor markers” or “tumor-associated antigens”), and can be useful as a pre-treatment diagnostic predicate, a post-treatment diagnostic indicator of recurrence, and a post-treatment indicator of therapeutic efficacy. Examples of tumor markers or tumor-associated antigens that can be evaluated as indicators of therapeutic efficacy include, but are not limited to, carcinembryonic antigen (CEA), prostate-specific antigen (PSA), CA-125, CA19-9, ganglioside molecules (e.g., GM2, GD2, and GD3), MART-1, heat shock proteins (e.g., gp96), sialyl Tn (STn), tyrosinase, MUC-1, HER-2/neu, c-erb-B2, KSA, PSMA, p53, RAS, EGF-R, VEGF, MAGE, and gp100. Other tumor-associated antigens are known in the art. RAID technology in combination with endoscopic detection systems also can efficiently distinguish small tumors from surrounding tissue (see, for example, U.S. Pat. No. 4,932,412).
In additional desirable embodiments, the treatment of cancer in a human patient in accordance with the inventive method is evidenced by one or more of the following results: (a) the complete disappearance of a tumor (i.e., a complete response), (b) about a 25% to about a 50% reduction in the size of a tumor for at least four weeks after completion of the therapeutic period as compared to the size of the tumor before treatment, (c) at least about a 50% reduction in the size of a tumor for at least four weeks after completion of the therapeutic period as compared to the size of the tumor before the therapeutic period, and (d) at least a 2% decrease (e.g., about a 5%, 10%, 20%, 30%, 40%, 50%, 60%, 70%, 80% or 90% decrease) in a specific tumor-associated antigen level at about 4-12 weeks after completion of the therapeutic period as compared to the tumor-associated antigen level before the therapeutic period. While at least a 2% decrease in a tumor-associated antigen level is preferred, any decrease in the tumor-associated antigen level is evidence of treatment of a cancer in a patient by the inventive method. For example, with respect to unresectable, locally advanced pancreatic cancer, treatment can be evidenced by at least a 10% decrease in the CA19-9 tumor-associated antigen level at 4-12 weeks after completion of the therapeutic period as compared to the CA19-9 level before the therapeutic period. Similarly, with respect to locally advanced rectal cancer, treatment can be evidenced by at least a 10% decrease in the CEA tumor-associated antigen level at 4-12 weeks after completion of the therapeutic period as compared to the CEA level before the therapeutic period.
With respect to quality of life assessments, such as the Clinical Benefit Response Criteria, the therapeutic benefit of the treatment in accordance with the invention can be evidenced in terms of pain intensity, analgesic consumption, and/or the Karnofsky Performance Scale score. The treatment of cancer in a human patient alternatively, or in addition, is evidenced by (a) at least a 50% decrease (e.g., at least a 60%, 70%, 80%, 90%, or 100% decrease) in pain intensity reported by a patient, such as for any consecutive four week period in the 12 weeks after completion of treatment, as compared to the pain intensity reported by the patient before treatment, (b) at least a 50% decrease (e.g., at least a 60%, 70%, 80%, 90%, or 100% decrease) in analgesic consumption reported by a patient, such as for any consecutive four week period in the 12 weeks after completion of treatment as compared to the analgesic consumption reported by the patient before treatment, and/or (c) at least a 20 point increase (e.g., at least a 30 point, 50 point, 70 point, or 90 point increase) in the Karnofsky Performance Scale score reported by a patient, such as for any consecutive four week period in the 12 weeks after completion of the therapeutic period as compared to the Karnofsky Performance Scale score reported by the patient before the therapeutic period.
The treatment of a proliferative disorder (e.g. cancer, whether benign or malignant) in a human patient desirably is evidenced by one or more (in any combination) of the foregoing results, although alternative or additional results of the referenced tests and/or other tests can evidence treatment efficacy.
In some embodiments, tumor size is reduced as a result of the inventive method preferably without significant adverse events in the subject. Adverse events are categorized or “graded” by the Cancer Therapy Evaluation Program (CTEP) of the National Cancer Institute (NCI), with Grade 0 representing minimal adverse side effects and Grade 4 representing the most severe adverse events. Desirably, the inventive method is associated with minimal adverse events, e.g. Grade 0, Grade 1, or Grade 2 adverse events, as graded by the C IEP/NCI. However, as discussed herein, reduction of tumor size, although preferred, is not required in that the actual size of tumor may not shrink despite the eradication of tumor cells. Eradication of cancerous cells is sufficient to realize a therapeutic effect. Likewise, any reduction in tumor size is sufficient to realize a therapeutic effect.
Detection, monitoring and rating of various cancers in a human are further described in Cancer Facts and Figures 2001, American Cancer Society, New York, N.Y., and International Patent Application WO 01/24684. Accordingly, a clinician can use standard tests to determine the efficacy of the various embodiments of the inventive method in treating cancer. However, in addition to tumor size and spread, the clinician also may consider quality of life and survival of the patient in evaluating efficacy of treatment.
In some embodiments, administration of a CD73 inhibitor provides improved therapeutic efficacy. Improved efficacy may be measured using any method known in the art, including but not limited to those described herein. In some embodiments, the improved therapeutic efficacy is an improvement of at least about 10%, 20%, 30%, 40%, 50%, 60%, 70%, 75%, 80%, 90%, 95%, 100%, 110%, 120%, 150%, 200%, 300%, 400%, 500%, 600%, 700%, 1000% or more, using an appropriate measure (e.g. tumor size reduction, duration of tumor size stability, duration of time free from metastatic events, duration of disease-free survival). Improved efficacy may also be expressed as fold improvement, such as at least about 2-fold, 3-fold, 4-fold, 5-fold, 6-fold, 7-fold, 8-fold, 9-fold, 10-fold, 20-fold, 30-fold, 40-fold, 50-fold, 60-fold, 70-fold, 80-fold, 90-fold, 100-fold, 1000-fold, 10000-fold or more, using an appropriate measure (e.g. tumor size reduction, duration of tumor size stability, duration of time free from metastatic events, duration of disease-free survival).
Pharmaceutical compositions: A composition of the present disclosure may be formulated in any suitable pharmaceutical formulation. A pharmaceutical composition of the present disclosure typically contains an active ingredient (e.g., a compound of Formulas (I), (I-A), (I-B), (I-C), (I-D), (I-E), or (II)), or a pharmaceutically acceptable salt and/or coordination complex thereof), and one or more pharmaceutically acceptable excipients, carriers, including but not limited to, inert solid diluents and fillers, diluents, sterile aqueous solution and various organic solvents, permeation enhancers, solubilizers and adjuvants. A composition of the present disclosure may be formulated in any suitable pharmaceutical formulation. In some embodiments, the pharmaceutical acceptable carriers, excipients are selected from water, alcohol, glycerol, chitosan, alginate, chondroitin, Vitamin E, mineral oil, and dimethyl sulfoxide (DMSO).
Pharmaceutical formulations may be provided in any suitable form, which may depend on the route of administration. In some embodiments, the pharmaceutical composition disclosed herein can be formulated in dosage form for administration to a subject. In some embodiments, the pharmaceutical composition is formulated for oral, intravenous, intraarterial, aerosol, parenteral, buccal, topical, transdermal, rectal, intramuscular, subcutaneous, intraosseous, intranasal, intrapulmonary, transmucosal, inhalation, and/or intraperitoneal administration. In some embodiments, the dosage form is formulated for oral intervention administration. For example, the pharmaceutical composition can be formulated in the form of a pill, a tablet, a capsule, an inhaler, a liquid suspension, a liquid emulsion, a gel, or a powder. In some embodiments, the pharmaceutical composition can be formulated as a unit dosage in liquid, gel, semi-liquid, semi-solid, or solid form.
The amount of each compound administered will be dependent on the mammal being treated, the severity of the disorder or condition, the rate of administration, the disposition of the compound and the discretion of the prescribing physician. However, an effective dosage may be in the range of about 0.001 to about 100 mg per kg body weight per day, in single or divided doses. In some instances, dosage levels below the lower limit of the aforesaid range may be more than adequate, while in other cases still larger doses may be employed without causing any harmful side effect, e.g., by dividing such larger doses into several small doses for administration throughout the day.
In some embodiments, the disclosure provides a pharmaceutical composition comprising an amount of a CD73 inhibitor formulated for administration to a subject in need thereof. In some embodiments, the pharmaceutical composition comprises between about 0.0001-500 g, 0.001-250 g, 0.01-100 g, 0.1-50 g, or 1-10 g of CD73 inhibitor. In some embodiments, the pharmaceutical composition comprises about or more than about 0.0001 g, 0.001 g, 0.01 g, 0.1, 0.5 g, 1 g, 2 g, 3 g, 4 g, 5 g, 6 g, 7 g, 8 g, 9 g, 10 g, 15 g, 20 g, 25 g, 50 g, 100 g, 200 g, 250 g, 300 g, 350 g, 400 g, 450 g, 500 g, or more of a CD73 inhibitor. In some embodiments, the pharmaceutical composition comprises between 0.001-2 g of a CD73 inhibitor in a single dose. In some embodiments, the pharmaceutical composition comprises an amount between about 50-150 g of a CD73 inhibitor. In some embodiments, the therapeutic amount can be an amount between about 0.001-0.1 g of a CD73 inhibitor. In some embodiments, the therapeutic amount can be an amount between about 0.01-30 g of a CD73 inhibitor.
In some embodiments, a therapeutically effective amount of CD73 inhibitor, which can be a daily amount administered over the course of a period of treatment, can sufficiently provide any one or more of the therapeutic effects described herein. As an example, the therapeutic effective amount can be in the range of about 0.001-1000 mg/kg body weight, 0.01-500 mg/kg body weight, 0.01-100 mg/kg body weight, 0.01-30 mg/kg body weight, 0.1-200 mg/kg body weight, 3-200 mg/kg body weight, 5-500 mg/kg body weight, 10-100 mg/kg body weight, 10-1000 mg/kg body weight, 50-200 mg/kg body weight, 100-1000 mg/kg body weight, 200-500 mg/kg body weight, 250-350 mg/kg body weight, or 300-600 mg/kg body weight of a CD73 inhibitor. In some embodiments, the therapeutic amount can be about or more than about 0.001 mg/kg body weight, 0.01 mg/kg body weight, 0.1 mg/kg body weight, 0.5 mg/kg body weight, 1 mg/kg body weight, 2 mg/kg body weight, 3 mg/kg body weight, 4 mg/kg body weight, 5 mg/kg body weight, 6 mg/kg body weight, 7 mg/kg body weight, 8 mg/kg body weight, 9 mg/kg body weight, 10 mg/kg body weight, 15 mg/kg body weight, 20 mg/kg body weight, 25 mg/kg body weight, 50 mg/kg body weight, 100 mg/kg body weight, 200 mg/kg body weight, 250 mg/kg body weight, 300 mg/kg body weight, 350 mg/kg body weight, 400 mg/kg body weight, 450 mg/kg body weight, 500 mg/kg body weight, 600 mg/kg body weight, 800 mg/kg body weight, 1000 mg/kg body weight, or more of a CD73 inhibitor. In some embodiments, the effective amount is at least about 0.01 mg/kg body weight of a CD73 inhibitor. In some embodiments, the effective amount is an amount between about 0.01-30 mg/kg body weight of a CD73 inhibitor. In some embodiments, the therapeutic amount can be an amount between about 50-150 mg/kg body weight of a CD73 inhibitor.
In some embodiments, the composition is provided in one or more unit doses. For example, the composition can be administered in 1, 2, 3, 4, 5, 6, 7, 14, 30, 60, or more doses. Such amount can be administered each day, for example in individual doses administered once, twice, or three or more times a day. However, dosages stated herein on a per day basis should not be construed to require administration of the daily dose each and every day. For example, if one of the agents is provided in a suitably slow-release form, two or more daily dosage amounts can be administered at a lower frequency, e.g., as a depot every second day to once a month or even longer. Most typically and conveniently for the subject, a CD73 inhibitor can be administered once a day, for example in the morning, in the evening or during the day.
The unit doses can be administered simultaneously or sequentially. The composition can be administered for an extended treatment period. Illustratively, the treatment period can be at least about one month, for example at least about 3 months, at least about 6 months or at least about 1 year. In some cases, administration can continue for substantially the remainder of the life of the subject.
In some embodiments, the CD73 inhibitor can be administered as part of a therapeutic regimen that comprises administering one or more second agents (e.g. 1, 2, 3, 4, 5, or more second agents), either simultaneously or sequentially with the CD73 inhibitor. When administered sequentially, the CD73 inhibitor may be administered before or after the one or more second agents. When administered simultaneously, the CD73 inhibitor and the one or more second agents may be administered by the same route (e.g. injections to the same location; tablets taken orally at the same time), by a different route (e.g. a tablet taken orally while receiving an intravenous infusion), or as part of the same combination (e.g. a solution comprising a CD73 inhibitor and one or more second agents).
A combination treatment according to the invention may be effective over a wide dosage range. For example, in the treatment of adult humans, dosages from 0.01 to 1000 mg, from 0.5 to 100 mg, from 1 to 50 mg per day, and from 5 to 40 mg per day are examples of dosages that may be used. The exact dosage will depend upon the agent selected, the route of administration, the form in which the compound is administered, the subject to be treated, the body weight of the subject to be treated, and the preference and experience of the attending physician.
Pharmaceutical composition for oral administration: In some embodiments, the disclosure provides a pharmaceutical composition for oral administration containing at least one compound of the present disclosure and a pharmaceutical excipient suitable for oral administration. The composition may be in the form of a solid, liquid, gel, semi-liquid, or semi-solid. In some embodiments, the composition further comprises a second agent.
In some embodiments, the invention provides a solid pharmaceutical composition for oral administration containing: (i) a CD73 inhibitor; and (ii) a pharmaceutical excipient suitable for oral administration. In some embodiments, the composition further contains: (iii) a third agent or even a fourth agent. In some embodiments, each compound or agent is present in a therapeutically effective amount. In other embodiments, one or more compounds or agents is present in a sub-therapeutic amount, and the compounds or agents act synergistically to provide a therapeutically effective pharmaceutical composition.
Pharmaceutical compositions of the disclosure suitable for oral administration can be presented as discrete dosage forms, such as hard or soft capsules, cachets, troches, lozenges, or tablets, or liquids or aerosol sprays each containing a predetermined amount of an active ingredient as a powder or in granules, a solution, or a suspension in an aqueous or non-aqueous liquid, an oil-in-water emulsion, or a water-in-oil liquid emulsion, or dispersible powders or granules, or syrups or elixirs. Such dosage forms can be prepared by any of the methods of pharmacy, which typically include the step of bringing the active ingredient(s) into association with the carrier. In general, the compositions are prepared by uniformly and intimately admixing the active ingredient(s) with liquid carriers or finely divided solid carriers or both, and then, if necessary, shaping the product into the desired presentation. For example, a tablet can be prepared by compression or molding, optionally with one or more accessory ingredients.
Compressed tablets can be prepared by compressing in a suitable machine the active ingredient(s) in a free-flowing form such as powder or granules, optionally mixed with an excipient such as, but not limited to, a binder, a lubricant, an inert diluent, and/or a surface active or dispersing agent. Molded tablets can be made by molding in a suitable machine a mixture of the powdered compound moistened with an inert liquid diluent.
This disclosure further encompasses anhydrous pharmaceutical composition and dosage forms comprising an active ingredient, since water can facilitate the degradation of some compounds. For example, water may be added (e.g., 5%) in the pharmaceutical arts as a means of simulating long-term storage in order to determine characteristics such as shelf-life or the stability of formulations over time. Anhydrous pharmaceutical compositions and dosage forms of the disclosure can be prepared using anhydrous or low moisture containing ingredients and low moisture or low humidity conditions. Pharmaceutical compositions and dosage forms of the disclosure which contain lactose can be made anhydrous if substantial contact with moisture and/or humidity during manufacturing, packaging, and/or storage is expected. An anhydrous pharmaceutical composition may be prepared and stored such that its anhydrous nature is maintained. Accordingly, anhydrous compositions may be packaged using materials known to prevent exposure to water such that they can be included in suitable formulary kits. Examples of suitable packaging include, but are not limited to, hermetically sealed foils, plastic or the like, unit dose containers, blister packs, and strip packs.
An active ingredient can be combined in an intimate admixture with a pharmaceutical carrier according to conventional pharmaceutical compounding techniques. The carrier can take a wide variety of forms depending on the form of preparation desired for administration. In preparing the composition for an oral dosage form, any of the usual pharmaceutical media can be employed as carriers, such as, for example, water, glycols, oils, alcohols, flavoring agents, preservatives, coloring agents, and the like in the case of oral liquid preparations (such as suspensions, solutions, and elixirs) or aerosols; or carriers such as starches, sugars, micro-crystalline cellulose, diluents, granulating agents, lubricants, binders, and disintegrating agents can be used in the case of oral solid preparations, in some embodiments without employing the use of lactose. For example, suitable carriers include powders, capsules, and tablets, with the solid oral preparations. If desired, tablets can be coated by standard aqueous or nonaqueous techniques.
Binders suitable for use in pharmaceutical composition and dosage forms include, but are not limited to, corn starch, potato starch, or other starches, gelatin, natural and synthetic gums such as acacia, sodium alginate, alginic acid, other alginates, powdered tragacanth, guar gum, cellulose and its derivatives (e.g., ethyl cellulose, cellulose acetate, carboxymethyl cellulose calcium, sodium carboxymethyl cellulose), polyvinyl pyrrolidone, methyl cellulose, pre-gelatinized starch, hydroxypropyl methyl cellulose, microcrystalline cellulose, and mixtures thereof.
Examples of suitable fillers for use in the pharmaceutical composition and dosage forms disclosed herein include, but are not limited to, talc, calcium carbonate (e.g., granules or powder), microcrystalline cellulose, powdered cellulose, dextrates, kaolin, mannitol, silicic acid, sorbitol, starch, pre-gelatinized starch, and mixtures thereof.
Disintegrants may be used in the composition of the disclosure to provide tablets that disintegrate when exposed to an aqueous environment. Too much of a disintegrant may produce tablets which may disintegrate in the bottle. Too little may be insufficient for disintegration to occur and may alter the rate and extent of release of the active ingredient(s) from the dosage form. A sufficient amount of disintegrant that is neither too little nor too much to detrimentally alter the release of the active ingredient(s) may be used to form the dosage forms of the compounds disclosed herein. The amount of disintegrant used may vary based upon the type of formulation and mode of administration, and may be readily discernible to those of ordinary skill in the art. About 0.5 to about 15 weight percent of disintegrant, or about 1 to about 5 weight percent of disintegrant, may be used in the pharmaceutical composition. Disintegrants that can be used to form pharmaceutical composition and dosage forms of the disclosure include, but are not limited to, agar-agar, alginic acid, calcium carbonate, microcrystalline cellulose, croscarmellose sodium, crospovidone, polacrilin potassium, sodium starch glycolate, potato or tapioca starch, other starches, pre-gelatinized starch, other starches, clays, other algins, other celluloses, gums or mixtures thereof.
Lubricants which can be used to form pharmaceutical composition and dosage forms of the disclosure include, but are not limited to, calcium stearate, magnesium stearate, mineral oil, light mineral oil, glycerin, sorbitol, mannitol, polyethylene glycol, other glycols, stearic acid, sodium lauryl sulfate, talc, hydrogenated vegetable oil (e.g., peanut oil, cottonseed oil, sunflower oil, sesame oil, olive oil, corn oil, and soybean oil), zinc stearate, ethyl oleate, ethylaureate, agar, or mixtures thereof. Additional lubricants include, for example, a syloid silica gel, a coagulated aerosol of synthetic silica, or mixtures thereof. A lubricant can optionally be added, in an amount of less than about 1 weight percent of the pharmaceutical composition.
When aqueous suspensions and/or elixirs are desired for oral administration, the active ingredient therein may be combined with various sweetening or flavoring agents, coloring matter or dyes and, if so desired, emulsifying and/or suspending agents, together with such diluents as water, ethanol, propylene glycol, glycerin and various combinations thereof.
The tablets can be uncoated or coated by known techniques to delay disintegration and absorption in the gastrointestinal tract and thereby provide a sustained action over a longer period. For example, a time delay material such as glyceryl monostearate or glyceryl distearate can be employed. Formulations for oral use can also be presented as hard gelatin capsules wherein the active ingredient is mixed with an inert solid diluent, for example, calcium carbonate, calcium phosphate or kaolin, or as soft gelatin capsules wherein the active ingredient is mixed with water or an oil medium, for example, peanut oil, liquid paraffin or olive oil.
Surfactant which can be used to form pharmaceutical composition and dosage forms of the disclosure include, but are not limited to, hydrophilic surfactants, lipophilic surfactants, and mixtures thereof. That is, a mixture of hydrophilic surfactants may be employed, a mixture of lipophilic surfactants may be employed, or a mixture of at least one hydrophilic surfactant and at least one lipophilic surfactant may be employed.
A suitable hydrophilic surfactant may generally have an HLB value of at least 10, while suitable lipophilic surfactants may generally have an HLB value of or less than about 10. An empirical parameter used to characterize the relative hydrophilicity and hydrophobicity of non-ionic amphiphilic compounds is the hydrophilic-lipophilic balance (“HLB” value). Surfactants with lower HLB values are more lipophilic or hydrophobic, and have greater solubility in oils, while surfactants with higher HLB values are more hydrophilic, and have greater solubility in aqueous solutions. Hydrophilic surfactants are generally considered to be those compounds having an HLB value greater than about 10, as well as anionic, cationic, or zwitterionic compounds for which the HLB scale is not generally applicable. Similarly, lipophilic (i.e., hydrophobic) surfactants are compounds having an HLB value equal to or less than about 10. However, HLB value of a surfactant is merely a rough guide generally used to enable formulation of industrial, pharmaceutical and cosmetic emulsions.
Hydrophilic surfactants may be either ionic or non-ionic. Suitable ionic surfactants include, but are not limited to, alkylammonium salts; fusidic acid salts; fatty acid derivatives of amino acids, oligopeptides, and polypeptides; glyceride derivatives of amino acids, oligopeptides, and polypeptides; lecithins and hydrogenated lecithins; lysolecithins and hydrogenated lysolecithins; phospholipids and derivatives thereof; lysophospholipids and derivatives thereof; carnitine fatty acid ester salts; salts of alkylsulfates; fatty acid salts; sodium docusate; acylactylates; mono- and di-acetylated tartaric acid esters of mono- and di-glycerides; succinylated mono- and di-glycerides; citric acid esters of mono- and di-glycerides; and mixtures thereof.
Within the aforementioned group, ionic surfactants include, by way of example: lecithins, lysolecithin, phospholipids, lysophospholipids and derivatives thereof; carnitine fatty acid ester salts; salts of alkylsulfates; fatty acid salts; sodium docusate; acylactylates; mono- and di-acetylated tartaric acid esters of mono- and di-glycerides; succinylated mono- and di-glycerides; citric acid esters of mono- and di-glycerides; and mixtures thereof.
Ionic surfactants may be the ionized forms of lecithin, lysolecithin, phosphatidylcholine, phosphatidylethanolamine, phosphatidylglycerol, phosphatidic acid, phosphatidylserine, lysophosphatidylcholine, lysophosphatidylethanolamine, lysophosphatidylglycerol, lysophosphatidic acid, lysophosphatidylserine, PEG-phosphatidylethanolamine, PVP-phosphatidylethanolamine, lactylic esters of fatty acids, stearoyl-2-lactylate, stearoyl lactylate, succinylated monoglycerides, mono/diacetylated tartaric acid esters of mono/diglycerides, citric acid esters of mono/diglycerides, cholylsarcosine, caproate, caprylate, caprate, laurate, myristate, palmitate, oleate, ricinoleate, linoleate, linolenate, stearate, lauryl sulfate, teracecyl sulfate, docusate, lauroyl carnitines, palmitoyl carnitines, myristoyl carnitines, and salts and mixtures thereof.
Hydrophilic non-ionic surfactants may include, but not limited to, alkylglucosides; alkylmaltosides; alkylthioglucosides; lauryl macrogolglycerides; polyoxyalkylene alkyl ethers such as polyethylene glycol alkyl ethers; polyoxyalkylene alkylphenols such as polyethylene glycol alkyl phenols; polyoxyalkylene alkyl phenol fatty acid esters such as polyethylene glycol fatty acids monoesters and polyethylene glycol fatty acids diesters; polyethylene glycol glycerol fatty acid esters; polyglycerol fatty acid esters; polyoxyalkylene sorbitan fatty acid esters such as polyethylene glycol sorbitan fatty acid esters; hydrophilic transesterification products of a polyol with at least one member of the group of glycerides, vegetable oils, hydrogenated vegetable oils, fatty acids, and sterols; polyoxyethylene sterols, derivatives, and analogues thereof; polyoxyethylated vitamins and derivatives thereof; polyoxyethylene-polyoxypropylene block copolymers; and mixtures thereof, polyethylene glycol sorbitan fatty acid esters and hydrophilic transesterification products of a polyol with at least one member of the group of triglycerides, vegetable oils, and hydrogenated vegetable oils. The polyol may be glycerol, ethylene glycol, polyethylene glycol, sorbitol, propylene glycol, pentaerythritol, or a saccharide.
Other hydrophilic-non-ionic surfactants include, without limitation, PEG-10 laurate, PEG-12 laurate, PEG-20 laurate, PEG-32 laurate, PEG-32 dilaurate, PEG-12 oleate, PEG-15 oleate, PEG-20 oleate, PEG-20 dioleate, PEG-32 oleate, PEG-200 oleate, PEG-400 oleate, PEG-15 stearate, PEG-32 distearate, PEG-40 stearate, PEG-100 stearate, PEG-20 dilaurate, PEG-25 glyceryl trioleate, PEG-32 dioleate, PEG-20 glyceryl laurate, PEG-30 glyceryl laurate, PEG-20 glyceryl stearate, PEG-20 glyceryl oleate, PEG-30 glyceryl oleate, PEG-30 glyceryl laurate, PEG-40 glyceryl laurate, PEG-40 palm kernel oil, PEG-50 hydrogenated castor oil, PEG-40 castor oil, PEG-35 castor oil, PEG-60 castor oil, PEG-40 hydrogenated castor oil, PEG-60 hydrogenated castor oil, PEG-60 corn oil, PEG-6 caprate/caprylate glycerides, PEG-8 caprate/caprylate glycerides, polyglyceryl-10 laurate, PEG-30 cholesterol, PEG-25 phytosterol, PEG-30 soya sterol, PEG-20 trioleate, PEG-40 sorbitan oleate, PEG-80 sorbitan laurate, polysorbate 20, polysorbate 80, POE-9 lauryl ether, POE-23 lauryl ether, POE-10 oleyl ether, POE-20 oleyl ether, POE-20 stearyl ether, tocopheryl PEG-100 succinate, PEG-24 cholesterol, polyglyceryl-10 oleate, Tween 40, Tween 60, sucrose monostearate, sucrose monolaurate, sucrose monopalmitate, PEG 10-100 nonyl phenol series, PEG 15-100 octyl phenol series, and poloxamers.
Suitable lipophilic surfactants include, by way of example only: fatty alcohols; glycerol fatty acid esters; acetylated glycerol fatty acid esters; lower alcohol fatty acids esters; propylene glycol fatty acid esters; sorbitan fatty acid esters; polyethylene glycol sorbitan fatty acid esters; sterols and sterol derivatives; polyoxyethylated sterols and sterol derivatives; polyethylene glycol alkyl ethers; sugar esters; sugar ethers; lactic acid derivatives of mono- and di-glycerides; hydrophobic transesterification products of a polyol with at least one member of the group of glycerides, vegetable oils, hydrogenated vegetable oils, fatty acids and sterols; oil-soluble vitamins/vitamin derivatives; and mixtures thereof. Within this group, preferred lipophilic surfactants include glycerol fatty acid esters, propylene glycol fatty acid esters, and mixtures thereof, or are hydrophobic transesterification products of a polyol with at least one member of the group of vegetable oils, hydrogenated vegetable oils, and triglycerides.
In one embodiment, the composition may include a solubilizer to ensure good solubilization and/or dissolution of the compound of the present disclosure and to minimize precipitation of the compound of the present disclosure. This can be especially important for composition for non-oral use, e.g., composition for injection. A solubilizer may also be added to increase the solubility of the hydrophilic drug and/or other components, such as surfactants, or to maintain the composition as a stable or homogeneous solution or dispersion.
Examples of suitable solubilizers include, but are not limited to, the following: alcohols and polyols, such as ethanol, isopropanol, butanol, benzyl alcohol, ethylene glycol, propylene glycol, butanediols and isomers thereof, glycerol, pentaerythritol, sorbitol, mannitol, transcutol, dimethyl isosorbide, polyethylene glycol, polypropylene glycol, polyvinylalcohol, hydroxypropyl methylcellulose and other cellulose derivatives, cyclodextrins and cyclodextrin derivatives; ethers of polyethylene glycols having an average molecular weight of about 200 to about 6000, such as tetrahydrofurfuryl alcohol PEG ether (glycofurol) or methoxy PEG; amides and other nitrogen-containing compounds such as 2-pyrrolidone, 2-piperidone, ε-caprolactam, N-alkylpyrrolidone, N-hydroxyalkylpyrrolidone, N-alkylpiperidone, N-alkylcaprolactam, dimethylacetamide and polyvinylpyrrolidone; esters such as ethyl propionate, tributylcitrate, acetyl triethylcitrate, acetyl tributyl citrate, triethylcitrate, ethyl oleate, ethyl caprylate, ethyl butyrate, triacetin, propylene glycol monoacetate, propylene glycol diacetate, ε-caprolactone and isomers thereof, δ-valerolactone and isomers thereof, β-butyrolactone and isomers thereof; and other solubilizers known in the art, such as dimethyl acetamide, dimethyl isosorbide, N-methyl pyrrolidones, monooctanoin, diethylene glycol monoethyl ether, and water.
Mixtures of solubilizers may also be used. Examples include, but not limited to, triacetin, triethylcitrate, ethyl oleate, ethyl caprylate, dimethylacetamide, N-methylpyrrolidone, N-hydroxyethylpyrrolidone, polyvinylpyrrolidone, hydroxypropyl methylcellulose, hydroxypropyl cyclodextrins, ethanol, polyethylene glycol 200-100, glycofurol, transcutol, propylene glycol, and dimethyl isosorbide. Particularly preferred solubilizers include sorbitol, glycerol, triacetin, ethyl alcohol, PEG-400, glycofurol and propylene glycol.
The amount of solubilizer that can be included is not particularly limited. The amount of a given solubilizer may be limited to a bioacceptable amount, which may be readily determined by one of skill in the art. In some circumstances, it may be advantageous to include amounts of solubilizers far in excess of bioacceptable amounts, for example to maximize the concentration of the drug, with excess solubilizer removed prior to providing the composition to a patient using conventional techniques, such as distillation or evaporation. If present, the solubilizer can be in a weight ratio of 10%, 25%, 50%, 100%, or up to about 200% by weight, based on the combined weight of the drug, and other excipients. If desired, very small amounts of solubilizer may also be used, such as 5%, 2%, 1% or even less. Typically, the solubilizer may be present in an amount of about 1% to about 100%, more typically about 5% to about 25% by weight.
The composition can further include one or more pharmaceutically acceptable additives and excipients. Such additives and excipients include, without limitation, detackifiers, anti-foaming agents, buffering agents, polymers, antioxidants, preservatives, chelating agents, viscomodulators, tonicifiers, flavorants, colorants, odorants, opacifiers, suspending agents, binders, fillers, plasticizers, lubricants, and mixtures thereof.
In addition, an acid or a base may be incorporated into the composition to facilitate processing, to enhance stability, or for other reasons. Examples of pharmaceutically acceptable bases include amino acids, amino acid esters, ammonium hydroxide, potassium hydroxide, sodium hydroxide, sodium hydrogen carbonate, aluminum hydroxide, calcium carbonate, magnesium hydroxide, magnesium aluminum silicate, synthetic aluminum silicate, synthetic hydrocalcite, magnesium aluminum hydroxide, diisopropylethylamine, ethanolamine, ethylenediamine, triethanolamine, triethylamine, triisopropanolamine, trimethylamine, tris(hydroxymethyl)aminomethane (TRIS) and the like. Also suitable are bases that are salts of a pharmaceutically acceptable acid, such as acetic acid, acrylic acid, adipic acid, alginic acid, alkanesulfonic acid, amino acids, ascorbic acid, benzoic acid, boric acid, butyric acid, carbonic acid, citric acid, fatty acids, formic acid, fumaric acid, gluconic acid, hydroquinosulfonic acid, isoascorbic acid, lactic acid, maleic acid, oxalic acid, para-bromophenylsulfonic acid, propionic acid, p-toluenesulfonic acid, salicylic acid, stearic acid, succinic acid, tannic acid, tartaric acid, thioglycolic acid, toluenesulfonic acid, uric acid, and the like. Salts of polyprotic acids, such as sodium phosphate, disodium hydrogen phosphate, and sodium dihydrogen phosphate can also be used. When the base is a salt, the cation can be any convenient and pharmaceutically acceptable cation, such as ammonium, alkali metals, alkaline earth metals, and the like. Example may include, but not limited to, sodium, potassium, lithium, magnesium, calcium and ammonium.
Suitable acids are pharmaceutically acceptable organic or inorganic acids. Examples of suitable inorganic acids include hydrochloric acid, hydrobromic acid, hydriodic acid, sulfuric acid, nitric acid, boric acid, phosphoric acid, and the like. Examples of suitable organic acids include acetic acid, acrylic acid, adipic acid, alginic acid, alkanesulfonic acids, amino acids, ascorbic acid, benzoic acid, boric acid, butyric acid, carbonic acid, citric acid, fatty acids, formic acid, fumaric acid, gluconic acid, hydroquinosulfonic acid, isoascorbic acid, lactic acid, maleic acid, methanesulfonic acid, oxalic acid, para-bromophenylsulfonic acid, propionic acid, p-toluenesulfonic acid, salicylic acid, stearic acid, succinic acid, tannic acid, tartaric acid, thioglycolic acid, toluenesulfonic acid, uric acid and the like.
Pharmaceutical composition for injection: In some embodiments, the disclosure provides a pharmaceutical composition for injection containing a compound of the present disclosure and a pharmaceutical excipient suitable for injection. Components and amounts of agents in the composition are as described herein.
The forms in which the novel composition of the present disclosure may be incorporated for administration by injection include aqueous or oil suspensions, or emulsions, with sesame oil, corn oil, cottonseed oil, or peanut oil, as well as elixirs, mannitol, dextrose, or a sterile aqueous solution, and similar pharmaceutical vehicles.
Aqueous solutions in saline are also conventionally used for injection. Ethanol, glycerol, propylene glycol, liquid polyethylene glycol, and the like (and suitable mixtures thereof), cyclodextrin derivatives, and vegetable oils may also be employed. The proper fluidity can be maintained, for example, by the use of a coating, such as lecithin, for the maintenance of the required particle size in the case of dispersion and by the use of surfactants. The prevention of the action of microorganisms can be brought about by various antibacterial and antifungal agents, for example, parabens, chlorobutanol, phenol, sorbic acid, thimerosal, and the like.
Sterile injectable solutions are prepared by incorporating the compound of the present disclosure in the required amount in the appropriate solvent with various other ingredients as enumerated above, as required, followed by filtered sterilization. Generally, dispersions are prepared by incorporating the various sterilized active ingredients into a sterile vehicle which contains the basic dispersion medium and the required other ingredients from those enumerated above. In the case of sterile powders for the preparation of sterile injectable solutions, certain desirable methods of preparation are vacuum-drying and freeze-drying techniques which yield a powder of the active ingredient plus any additional desired ingredient from a previously sterile-filtered solution thereof.
Other pharmaceutical compositions: Pharmaceutical compositions may also be prepared from composition described herein and one or more pharmaceutically acceptable excipients suitable for transdermal, inhalative, sublingual, buccal, rectal, intraosseous, intraocular, intranasal, epidural, or intraspinal administration. Preparations for such pharmaceutical composition are well-known in the art. See, e.g., See, e.g., Anderson, Philip O.; Knoben, James E.; Troutman, William G, eds., Handbook of Clinical Drug Data, Tenth Edition, McGraw-Hill, 2002; Pratt and Taylor, eds., Principles of Drug Action, Third Edition, Churchill Livingston, N.Y., 1990; Katzung, ed., Basic and Clinical Pharmacology, Ninth Edition, McGraw Hill, 2003; Goodman and Gilman, eds., The Pharmacological Basis of Therapeutics, Tenth Edition, McGraw Hill, 2001; Remingtons Pharmaceutical Sciences, 20th Ed., Lippincott Williams & Wilkins, 2000; Martindale, The Extra Pharmacopoeia, Thirty-Second Edition (The Pharmaceutical Press, London, 1999); all of which are incorporated by reference herein in their entirety.
The compounds of the present invention can also be administered in the form of liposomes. As is known in the art, liposomes are generally derived from phospholipids or other lipid substances. Liposomes are formed by mono- or multilamellar hydrated liquid crystals that are dispersed in an aqueous medium. Any non-toxic, physiologically acceptable and metabolizable lipid capable of forming liposomes can be used. The present compositions in liposome form can contain, in addition to a compound of the present invention, stabilizers, preservatives, excipients, and the like. The preferred lipids are the phospholipids and phosphatidyl cholines (lecithins), both natural and synthetic. Methods to form liposomes are known in the art. See, for example, Prescott, Ed., “Methods in Cell Biology”, Volume XIV, ISBN: 978-0-12-564114-2, Academic Press, New York, N.W., p. 33 (1976) and Medina, Zhu, and Kairemo, “Targeted liposomal drug delivery in cancer”, Current Pharm. Des. 10: 2981-2989, 2004. For additional information regarding drug formulation and administration, see “Remington: The Science and Practice of Pharmacy,” Lippincott Williams & Wilkins, Philadelphia, ISBN-10: 0781746736, 21st Edition (2005).
The invention also provides kits. The kits may include a CD73 inhibitor and one or more additional agents in suitable packaging with written material that can include instructions for use, discussion of clinical studies, listing of side effects, and the like. Such kits may also include information, such as scientific literature references, package insert materials, clinical trial results, and/or summaries of these and the like, which indicate or establish the activities and/or advantages of the composition, and/or which describe dosing, administration, side effects, drug interactions, or other information useful to the health care provider. Such information may be based on the results of various studies, for example, studies using experimental animals involving in vivo models and studies based on human clinical trials. The kit may further contain another agent. In some embodiments, the compound of the present invention and the agent are provided as separate compositions in separate containers within the kit. In some embodiments, the compound of the present invention and the agent are provided as a single composition within a container in the kit. Suitable packaging and additional articles for use (e.g., measuring cup for liquid preparations, foil wrapping to minimize exposure to air, and the like) are known in the art and may be included in the kit. Kits described herein can be provided, marketed and/or promoted to health providers, including physicians, nurses, pharmacists, formulary officials, and the like. Kits may also, in some embodiments, be marketed directly to the consumer.
Combination therapies: The present invention also provides methods for further combination therapies in which, in addition to a CD73 inhibitor, one or more second agents known to modulate other pathways, or other components of the same pathway, or even overlapping sets of target proteins is used, or a pharmaceutically acceptable salt, ester, prodrug, solvate, hydrate or derivative thereof. In one aspect, such therapy includes but is not limited to the combination of the composition comprising a CD73 inhibitor as described herein with one or more of other CD73 inhibitors as described herein, chemotherapeutic agents, therapeutic antibodies, immunotherapeutic agents, and radiation treatment, to provide, where desired, a synergistic or additive therapeutic effect.
Second agents useful in the methods of the invention include any agent capable of modulating a target molecule, either directly or indirectly. Non-limiting examples of target molecules modulated by second agents include enzymes, enzyme substrates, products of transitions, antibodies, antigens, membrane proteins, nuclear proteins, cytosolic proteins, mitochondrial proteins, lysosomal proteins, scaffold proteins, lipid rafts, phosphoproteins, glycoproteins, membrane receptors, G-protein-coupled receptors, nuclear receptors, protein tyrosine kinases, protein serine/threonine kinases, phosphatases, proteases, hydrolases, lipases, phospholipases, ligases, reductases, oxidases, synthases, transcription factors, ion channels, RNA, DNA, RNAse, DNAse, phospholipids, sphingolipids, nuclear receptors, ion channel proteins, nucleotide-binding proteins, calcium-binding proteins, chaperones, DNA binding proteins, RNA binding proteins, scaffold proteins, tumor suppressors, cell cycle proteins, and histones.
Second agents may target one or more signaling molecules including but not limited to the following: 4EPB-1, 5-lipoxygenase, A1, Ab1, Acetyl-CoAa Carboxylase, actin, adaptor/scaffold proteins, adenylyl cyclase receptors, adhesion molecules, AFT, Akt1, Akt2, Akt3, ALK, AMPKs, APC/C, ARaf, Arf-GAPs, Arfs, ASK, ASK1, asparagine hydroxylase FIE transferases, ATF2, ATF-2, ATM, ATP citrate lyase, ATR, Auroras, B cell adaptor for PI3-kinase (BCAP), Bad, Bak, Bax, Bc1-2, Bcl-B, Bcl-w, Bcl-XL, Bid, Bik, Bim, BLNK, Bmf, BMP receptors, Bok, BRAF, Btk, Bub, cadherins, CaMKs, Casein kinases, Caspase 2, Caspase 3, Caspase 6, Caspase 7, Caspase 8, Caspase 9, caspases, catenins, cathepsins, caveolins, Cbl, CBP/P300 family, CD45, CDCl25 phosphatases, Cdc42, Cdk 1, Cdk 2, Cdk 4, Cdk 6, Cdk 7, Cdks, CENPs, Chk1, Chk2, CLKs, Cot, cRaf, CREB, Crk, CrkL, Csk, Cyclin A, Cyclin B, Cyclin D, Cyclin E, Db1, deacetylases, DLK, DNA methyl transferases, DNA-PK, Dok, Dual Specificity phosphatases (DUSPs), E2Fs, eg5/KSP, Egr-1, eIF4E-binding protein, Elk, elongation factors, endosomal sorting complex required for transport (ESCRT) proteins, Eph receptors, Erks, esterases, Ets, Eyes absent (EYA) tyrosine phosphatases, FAK, Fas associated death domain (FADD), FGF receptors, Fgr, focal adhesion kinase, fodrin, Fos, FOXO, Fyn, GAD, Grb2, Grb2 associated binder (GAB), GSK3α, GSK3β, H-Ras, H3K27, Hdm, HER receptors, HIFs, histone acetylases, histone deacetylases, Histone H3K4 demethylases, HMGA, Hrk, Hsp27, Hsp70, Hsp90s, hydrolases, hydroxylases, IAPs, IGF receptors, IKKs, IL-2, IL-4, IL-6, IL-8, ILK, Immunoglobulin-like adhesion molecules, initiation factors, inositol phosphatases, Insulin receptor, integrins, interferon α, interferon β, IRAKs, Jak1, Jak2, Jak3, JHDM2A, Jnks, K-Ras, Kit receptor, KSR, LAR phosphatase, LAT, Lck, Lim kinase, LKB-1, Low molecular weight tyrosine phosphatase, Lyn, MAP kinase phosphatases (MKPs), MAPKAPKs, MARKs, Md-1, Mek 1, Mek 2, MEKKs, MELK, Met receptor, metabolic enzymes, metalloproteinases, MKK3/6, MKK4/7, MLKs, MNKs, molecular chaperones, Mos, mTOR, multi-drug resistance proteins, muscarinic receptors, Myc, MyD88, myosin, myosin binding proteins, myotubularins, MYST family, Myt 1, N-Ras, Nck, NFAT, NIK, nitric oxide synthase, Non receptor tyrosine phosphatases (NPRTPs), Noxa, nucleoside transporters, p130CAS, p14Arf, p16, p21CIP, p27KIP, p38s, p53, p70S6 Kinase, p90Rsks, PAKs, paxillin, PDGF receptors, PDK1, P-Glycoprotein, phopsholipases, phosphoinositide kinases, PI3-Kinase class 1, Pim1, Pim2, Pim3, Pin1 prolyl isomerase, PKAs, PKCs, PKR, potassium channels, PP1, PP2A, PP2B, PP2C, PPS, PRK, Prks, prolyl-hydroxylases PHD-1, prostaglandin synthases, pS6, PTEN, Puma, RABs, Rac, Ran, Ras-GAP, Rb, Receptor protein tyrosine phosphatases (RPTPs), Rel-A (p65-NFKB), Ret, RHEB, Rho, Rho-GAPs, RIP, RNA polymerase, ROCK 1, ROCK 2, SAPK/JNK1,2,3, SCF ubiquitination ligase complex, selectins, separase, serine phosphatases, SGK1, SGK2, SGK3, Shc, SHIPS, SHPs, sirtuins, SLAP, Slingshot phosphatases (SSH), Smac, SMADs, small molecular weight GTPases, sodium channels, Sos, Spl, sphingomyelinases, sphingosine kinases, Src, SRFs, STAT1, STAT5, STAT4, STAT5, STATE, suppressors of cytokine signaling (SOCs), Syk, T-bet, T-Cell leukemia family, TCFs, TGFβ receptors, Tiam, TIE1, TIE2, topoisomerases, Tp1, TRADD, TRAF2, Trk receptors, TSC1,2, tubulin, Tyk2, ubiquitin proteases, urokinase-type plasminogen activator (uPA) and uPA receptor (uPAR) system, UTX, Vav, VEGF receptors, vesicular protein sorting (Vsps), VHL, Weel, WT-1, WT-1, XIAP, Yes, ZAP70,13-adrenergic receptors and β-catenin.
Second agents useful in the methods of the disclosure include immunotherapeutic agents. In some embodiments, the immunotherapeutic agent is a checkpoint inhibitor. In some embodiments, the immunotherapeutic agent is a PD-1 inhibitor, a PD-L1 inhibitor, a CTLA-4 inhibitor, or a B7 inhibitor. In some embodiments, the immunotherapeutic agent comprises a PD-1 inhibitor. In some embodiments, the immunotherapeutic agent comprises a CTLA-4 inhibitor. In some embodiments, the immunotherapeutic agent comprises a B7 inhibitor. In some embodiments, the immunotherapeutic agent comprises a PD-L1 inhibitor.
Exemplary PD-1 inhibitors: A PD-1 inhibitor suitable for use in the subject methods can be selected from a variety of types of molecules. For example, the PD-1 inhibitor can be a biological or chemical compound, such as an organic or inorganic molecule, peptide, peptide mimetic, antibody or an antigen-binding fragment of an antibody. Some exemplary classes of agents suitable for use in the subject methods are detailed in the sections below. A PD-1 inhibitor for use in the present invention can be any PD-1 inhibitor that is known in the art, and can include any entity that, upon administration to a patient, results in inhibition of the PD-1 pathway in the patient. A PD-1 inhibitor can inhibit PD-1 by any biochemical mechanism, including disruption of any one or more of PD-1/PD-L1, PD-1/PD-L2 and PD-L1/CD80 interactions.
In some embodiments, the PD-1 inhibitor is a molecule that inhibits the binding of PD-1 to its ligand binding partners. In a specific aspect, the PD-1 ligand binding partners are PD-L1 and/or PD-L2. In another embodiment, a PD-1 inhibitor is a molecule that inhibits the binding of PD-L1 to its binding partners. In a specific aspect, PD-L1 binding partners are PD-1 and/or CD80. In another embodiment, the PD-1 inhibitor is a molecule that inhibits the binding of PD-L2 to its binding partners. In a specific aspect, a PD-L2 binding partner is PD-1. The inhibitor may be an antibody, an antigen binding fragment thereof, an immunoadhesin, a fusion protein or oligopeptide.
In some embodiments, the PD-1 inhibitor is an anti-PD-1 antibody. In some further embodiments, the anti-PD-1 antibody is capable of inhibiting binding between PD-1 and PD-L1. In another embodiment, the anti-PD-1 antibody is capable of inhibiting binding between PD-1 and PD-L2. In some embodiments, the PD-1 inhibitor is an anti-PD-L1 antibody. In some embodiments, the anti-PD-L1 antibody is capable of inhibiting binding between PD-L1 and PD-1 and/or between PD-L1 and CD80. In some embodiments, the PD-1 inhibitor is an anti-PD-L2 antibody. In some further embodiments, the anti-PD-L2 antibody is capable of inhibiting binding between PD-1 and PD-L2. In yet another embodiment, the PD-1 inhibitor is nivolumab or pembrolizumab.
Inhibition of the PD-1 pathway can enhance the immune response to cancerous cells in a patient. The interaction between PD-1 and PD-L1 impairs T cell response as manifested by a decrease in tumor-infiltrating lymphocytes (TILs) and a decrease in T-cell receptor mediated proliferation, resulting in T cell anergy, exhaustion or apoptosis, and immune evasion by the cancerous cells. This immune suppression can be reversed by inhibiting the local interaction between PD-L1 and PD-1 using a PD-1 inhibitor, including, for example, an anti-PD-1 and/or an anti-PD-L1 Ab. A PD-1 inhibitor may improve or restore antitumor T-cell functions.
Anti-PD-1 antibodies suitable for use in the invention can be generated using methods well known in the art. Exemplary PD-1 inhibitors include, but are not limited to: nivolumab (BMS936558), pembrolizumab (MK-3475), pidilizumab (CT-011), AMP-224, AMP-514, BMS-936559, RG7446 (MPDL3280A), MDX-1106 (Medarex Inc.), MSB0010718C, MEDI4736, and HenGrui mABOO5 (WO 15/085847). Further PD-1 antibodies and other PD-1 inhibitors include those described in WO 04/056875, WO 06/121168, WO 07/005874, WO 08/156712, WO 09/014708, WO 09/114335, WO 09/101611, WO 10/036959, WO 10/089411, WO 10/027827, WO 10/077634, WO 11/066342, WO 12/145493, WO 13/019906, WO 13/181452, WO 14/022758, WO 14/100079, WO 14/206107, WO 15/036394, WO 15/085847, WO 15/112900, WO 15/112805, WO 15/112800, WO 15/109124, WO 15/061668, WO 15/048520, WO 15/044900, WO 15/036927, WO 15/035606; U.S. Pub. No. 2015/0071910; and U.S. Pat. Nos. 7,488,802; 7,521,051; 7,595,048; 7,722,868; 7,794,710; 8,008,449; 8,354,509; 8,383,796; 8,652,465; and 8,735,553; all of which are incorporated herein by reference. Some anti-PD-1 antibodies are commercially available, for example from ABCAM® (AB137132), BIOLEGEND® (EH12.2H7, RMP1-14) and AFFYMETRIX EBIOSCIENCE (J105, J116, M1H4).
Exemplary CTLA-4 inhibitors: A CTLA-4 inhibitor suitable for use in the subject methods can be selected from a variety of types of molecules. For example, the CTLA-4 inhibitor can be a biological or chemical compound, such as an organic or inorganic molecule, peptide, peptide mimetic, antibody or an antigen-binding fragment of an antibody. Some exemplary classes of agents suitable for use in the subject methods are detailed in the sections below. A CTLA-4 inhibitor for use in the present invention can be any CTLA-4 inhibitor that is known in the art, and can include any entity that, upon administration to a patient, results in inhibition of the CTLA-4 pathway in the patient. A CTLA-4 inhibitor can inhibit CTLA-4 by any biochemical mechanism, including disruption of either one or both of CTLA-4/CD80 and CTLA-4/CD86 interactions.
In some embodiments, the CTLA-4 inhibitor is a molecule that inhibits the binding of CTLA-4 to its ligand binding partners. In a specific aspect, the CTLA-4 ligand binding partners are CD80 and/or CD86. In another embodiment, a CTLA-4 inhibitor is a molecule that inhibits the binding of CD80 to its binding partners. In a specific aspect, a CD80 binding partner is CTLA-4. In another embodiment, the CTLA-4 inhibitor is a molecule that inhibits the binding of CD86 to its binding partners. In a specific aspect, a CD86 binding partner is CTLA-4. The inhibitor may be an antibody, an antigen binding fragment thereof, an immunoadhesin, a fusion protein or oligopeptide.
In some embodiments, the CTLA-4 inhibitor is an anti-CTLA-4 antibody. In some further embodiments, the anti-CTLA-4 antibody is capable of inhibiting binding between CTLA-4 and CD80. In another embodiment, the anti-CTLA-4 antibody is capable of inhibiting binding between CTLA-4 and CD86. In some embodiments, the CTLA-4 inhibitor is an anti-CD80 antibody. In some embodiments, the anti-CD80 antibody is capable of inhibiting binding between CTLA-4 and CD80. In some embodiments, the CTLA-4 inhibitor is an anti-CD86 antibody. In some further embodiments, the anti-CD86 antibody is capable of inhibiting binding between CTLA-4 and CD86. In yet another embodiment, the CTLA-4 inhibitor is tremelimumab or ipilimumab.
Inhibition of the CTLA-4 pathway can enhance the immune response to cancerous cells in a patient. The interaction between CTLA-4 and one of its natural ligands, CD80 and CD86, delivers a negative regulatory signal to T cells. This immune suppression can be reversed by inhibiting the local interaction between CD80 or CD86 and CTLA-4 using a CTLA-4 inhibitor, including, for example, an anti-CTLA-4 Ab, anti-CD80 Ab or an anti-CD86 Ab. A CTLA-4 inhibitor may improve or restore antitumor T-cell functions.
Anti-CTLA-4 antibodies suitable for use in the invention can be generated using methods well known in the art. Exemplary CTLA-4 inhibitors include but are not limited to tremelimumab and ipilimumab (also known as 10D1 or MDX-010). Further CTLA-4 antibodies and other CTLA-4 inhibitors include those described in WO 98/042752, WO 00/037504, WO 01/014424 and WO 04/035607; U.S. Pub. Nos. 2002/0039581, 2002/086014 and 2005/0201994; U.S. Pat. Nos. 5,811,097; 5,855,887; 5,977,318; 6,051,227; 6,207,156; 6,682,736; 6,984,720; 7,109,003; 7,132,281; 7,605,238; 8,143,379; 8,318,916; 8,435,516; 8,784,815; and 8,883,984; EP Pat. No. 1212422; Hurwitz et al., PNAS 1998, 95(17): 10067-10071; Camacho et al., J Clin Oncology 2004, 22(145): abstract no. 2505 (antibody CP-675206); and Mokyr, et al., Cancer Research 1998, 58:5301-5304; all of which are incorporated herein by reference.
Exemplary PD-L1 inhibitors: A PD-L1 inhibitor suitable for use in the subject methods can be selected from a variety of types of molecules. For example, the PD-L1 inhibitor can be a biological or chemical compound, such as an organic or inorganic molecule, peptide, peptide mimetic, antibody or an antigen-binding fragment of an antibody. In some embodiments, the PD-L1 inhibitor is a PD-L1 antibody. In a further embodiment, the PD-L1 antibody is selected from BMS-936559 (also known as MDX1105), MEDI4736, MPDL3280A and MSB0010718C.
In some embodiments, the PD-1 or PD-L1 inhibitor is a small molecule PD-1 or PD-L1 inhibitor. Examples of small molecule PD-1 or PD-L1 inhibitor include those described in WO2018/009505, WO2017/066227, WO2018/044963, WO2018/026971, WO2018/045142, WO2018/005374, WO2017/202275, WO2017/202273, WO2017/202276, WO2018/006795, WO2015/033301, WO2016/142852, WO2016/142894, WO2015/033299, WO2016/142886, WO2016/142833, WO2018/051255, WO2018/051254, WO2017/205464, US2017/0107216, WO2017/070089, WO2017/106634, US2017/0174679, US2018/0057486, WO2018/013789, US2017/0362253, WO2017/192961, WO2017/118762, US2014/199334, WO2015/036927; all of which are incorporated herein by reference. In some embodiments, the PD-1 or PD-L1 inhibitor is a macrocyclic peptide or peptidomimetic PD-1 or PD-L1 inhibitor. Examples of macrocyclic peptide or peptidomimetic PD-1 or PD-L1 inhibitor include those described in US2014/0294898, US2016/0340391, WO2016/039749, WO2017/176608, WO2016/077518, WO2016/100608, US2017/0252432, WO2016/126646, WO2015/044900, WO2015/033303, WO2016/142835; all of which are incorporated herein by reference.
In one aspect, this invention also relates to methods and pharmaceutical compositions for inhibiting abnormal cell growth in a mammal which comprises an amount of a CD73 inhibitor, or a pharmaceutically acceptable salt, ester, prodrug, solvate, hydrate or derivative thereof, in combination with an amount of an anti-cancer agent (e.g., a chemotherapeutic agent). Many chemotherapeutics are presently known in the art and can be used in combination with the compounds of the invention.
In some embodiments, the chemotherapeutic is selected from mitotic inhibitors, alkylating agents, anti-metabolites, intercalating antibiotics, growth factor inhibitors, cell cycle inhibitors, enzymes, topoisomerase inhibitors, biological response modifiers, anti-hormones, angiogenesis inhibitors, immunotherapeutic agents, proapoptotic agents, and anti-androgens. Non-limiting examples are chemotherapeutic agents, cytotoxic agents, and non-peptide small molecules such as Tykerb/Tyverb (lapatinib), Gleevec (Imatinib Mesylate), Velcade (bortezomib), Casodex (bicalutamide), Iressa (gefitinib), and Adriamycin as well as a host of chemotherapeutic agents. Non-limiting examples of chemotherapeutic agents include 2,2′,2″-trichlorotriethylamine; 2-ethylhydrazide; aceglatone; aldophosphamide glycoside; alkyl sulfonates such as busulfan, improsulfan and piposulfan; alkylating agents such as thiotepa and cyclosphosphamide (CYTOXAN™); aminolevulinic acid; amsacrine; anti-adrenals such as aminoglutethimide, mitotane, trilostane; antibiotics such as anthracyclins, actinomycins and bleomycins including aclacinomysins, actinomycin, anthramycin, azaserine, bleomycins, cactinomycin, calicheamicin, carabicin, carminomycin, carzinophilin, Casodex™, chromomycins, dactinomycin, daunorubicin, detorubicin, 6-diazo-5-oxo-L-norleucine, doxorubicin, epirubicin, esorubicin, idarubicin, marcellomycin, mitomycins, mycophenolic acid, nogalamycin, olivomycins, peplomycin, potfiromycin, puromycin, quelamycin, rodorubicin, streptonigrin, streptozocin, tubercidin, ubenimex, zinostatin, zorubicin; anti-metabolites such as methotrexate and 5-fluorouracil (5-FU); arabinoside (“Ara-C”); aziridines such as benzodopa, carboquone, meturedopa, and uredopa; bestrabucil; bisantrene; capecitabine; cyclophosphamide; dacarbazine; defofamine; demecolcine; diaziquone; edatraxate; elfomithine; elliptinium acetate; esperamicins; ethylenimines and methylamelamines including altretamine, triethylenemelamine, trietylenephosphoramide, triethylenethiophosphaoramide and trimethylolomelamine; etoglucid; folic acid analogues such as denopterin, methotrexate, pteropterin, trimetrexate; folic acid replenisher such as frolinic acid; gacytosine; gallium nitrate; gemcitabine; hydroxyurea; lentinan; lonidamine; mannomustine; mitobronitol; mitoguazone; mitolactol; mitoxantrone; mopidamol; nitracrine; nitrogen mustards such as chlorambucil, chlornaphazine, cholophosphamide, estramustine, ifosfamide, mechlorethamine, mechlorethamine oxide hydrochloride, melphalan, novembichin, phenesterine, prednimustine, trofosfamide, uracil mustard; nitrosoureas; nitrosoureas such as carmustine, chlorozotocin, fotemustine, lomustine, nimustine, ranimustine; oxazaphosphorines; pentostatin; phenamet; pipobroman; pirarubicin; podophyllinic acid; procarbazine; PSK®; purine analogs such as fludarabine, 6-mercaptopurine, thiamiprine, thioguanine; pyrimidine analogs such as ancitabine, azacitidine, 6-azauridine, carmofur, cytarabine, dideoxyuridine, doxifluridine, enocitabine, floxuridine, androgens such as calusterone, dromostanolone propionate, epitiostanol, mepitiostane, testolactone; razoxane; retinoic acid; sizofiran; spirogermanium; taxanes, e.g., paclitaxel (TAXOL™, Bristol-Myers Squibb Oncology, Princeton, N.J.) and docetaxel (TAXOTERE™, Rhone-Poulenc Rorer, Antony, France); tenuazonic acid; thiotepa; triazenes; triaziquone, urethan; vindesine; and pharmaceutically acceptable salts, acids or derivatives of any of the above. Also included as suitable chemotherapeutic cell conditioners are anti-hormonal agents that act to regulate or inhibit hormone action on tumors such as anti-estrogens including for example tamoxifen (Nolvadex™), raloxifene, aromatase inhibiting 4(5)-imidazoles, 4-hydroxytamoxifen, trioxifene, keoxifene, LY 117018, onapristone, and toremifene (Fareston); and anti-androgens such as flutamide, nilutamide, bicalutamide, leuprolide, and goserelin; chlorambucil; gemcitabine; 6-thioguanine; mercaptopurine; methotrexate; platinum or platinum analogs and complexes such as cisplatin and carboplatin; anti-microtubule such as diterpenoids, including paclitaxel and docetaxel, or Vinca alkaloids including vinblastine, vincristine, vinflunine, vindesine, and vinorelbine; etoposide (VP-16); ifosfamide; mitomycin C; mitoxantrone; vincristine; vinorelbine; navelbine; novantrone; teniposide; daunomycin; aminopterin; xeloda; ibandronate; topoisomerase I and II inhibitors including camptothecins (e.g., camptothecin-11), topotecan, irinotecan, and epipodophyllotoxins; topoisomerase inhibitor RFS 2000; epothilone A or B; difluoromethylornithine (DMFO); histone deacetylase inhibitors; compounds which induce cell differentiation processes; gonadorelin agonists; methionine aminopeptidase inhibitors; compounds targeting/decreasing a protein or lipid kinase activity; compounds which target, decrease or inhibit the activity of a protein or lipid phosphatase; anti-androgens; bisphosphonates; biological response modifiers; antiproliferative antibodies; heparanase inhibitors; inhibitors of Ras oncogenic isoforms; telomerase inhibitors; proteasome inhibitors; compounds used in the treatment of hematologic malignancies; compounds which target, decrease or inhibit the activity of Flt-3; Hsp90 inhibitors; temozolomide (TEMODAL®); Hsp90 inhibitors such as 17-AAG (17-allylaminogeldanamycin, NSC330507), 17-DMAG (17-dimethylaminoethylamino-17-demethoxy-geldanamycin, NSC707545), IPI-504, CNF1010, CNF2024, CNF1010 from Conforma Therapeutics; temozolomide (TEMODAL®); kinesin spindle protein inhibitors, such as SB715992 or SB743921 from GlaxoSmithKline, or pentamidine/chlorpromazine from CombinatoRx; MEK inhibitors such as ARRY142886 from Array PioPharma, AZD6244 from AstraZeneca, PD181461 or PD0325901 from Pfizer, leucovorin, EDG binders, antileukemia compounds, ribonucleotide reductase inhibitors, S-adenosylmethionine decarboxylase inhibitors, antiproliferative antibodies or other chemotherapeutic compounds. Where desired, the compounds or pharmaceutical composition of the present invention can be used in combination with commonly prescribed anti-cancer drugs such as Herceptin®, Avastin®, Erbitux®, Rituxan®, Taxol®, Arimidex®, Taxotere®, and Velcade®.
This invention further relates to a method for using the compounds or pharmaceutical composition in combination with other tumor treatment approaches, including surgery, ionizing radiation, photodynamic therapy, or implants, e.g., with corticosteroids, hormones, or used as radiosensitizers.
One such approach may be, for example, radiation therapy in inhibiting abnormal cell growth or treating the proliferative disorder in the mammal. Techniques for administering radiation therapy are known in the art, and these techniques can be used in the combination therapy described herein. The administration of the compound of the invention in this combination therapy can be determined as described herein.
Radiation therapy can be administered through one of several methods, or a combination of methods, including without limitation external-beam therapy, internal radiation therapy, implant radiation, stereotactic radiosurgery, systemic radiation therapy, radiotherapy and permanent or temporary interstitial brachytherapy. The term “brachytherapy,” as used herein, refers to radiation therapy delivered by a spatially confined radioactive material inserted into the body at or near a tumor or other proliferative tissue disease site. The term is intended without limitation to include exposure to radioactive isotopes (e.g., At-211, I-131, I-125, Y-90, Re-186, Re-188, Sm-153, Bi-212, P-32, and radioactive isotopes of Lu). Suitable radiation sources for use as a cell conditioner of the present invention include both solids and liquids. By way of non-limiting example, the radiation source can be a radionuclide, such as 1-125, I-131, Yb-169, Ir-192 as a solid source, 1-125 as a solid source, or other radionuclides that emit photons, beta particles, gamma radiation, or other therapeutic rays. The radioactive material can also be a fluid made from any solution of radionuclide(s), e.g., a solution of I-125 or I-131, or a radioactive fluid can be produced using a slurry of a suitable fluid containing small particles of solid radionuclides, such as Au-198, Y-90. Moreover, the radionuclide(s) can be embodied in a gel or radioactive micro spheres.
Without being limited by any theory, the compounds of the present invention can render abnormal cells more sensitive to treatment with radiation for purposes of killing and/or inhibiting the growth of such cells. Accordingly, this invention further relates to a method for sensitizing abnormal cells in a mammal to treatment with radiation, which comprises administering to the mammal an amount of a CD73 inhibitor or a pharmaceutically acceptable salt, ester, prodrug, solvate, hydrate or derivative thereof, which is effective in sensitizing abnormal cells to treatment with radiation. The amount of the compound in this method can be determined according to the means for ascertaining effective amounts of such compounds described herein.
Further therapeutic agents that can be combined with a subject compound may be found in Goodman and Gilman's “The Pharmacological Basis of Therapeutics” Tenth Edition edited by Hardman, Limbird and Gilman or the Physician's Desk Reference, both of which are incorporated herein by reference in their entirety.
In some embodiments, the compositions and methods further comprise administering, separately or simultaneously one or more additional agents (e.g. 1, 2, 3, 4, 5, or more). Additional agents can include those useful in wound healing. Non-limiting examples of additional agents include antibiotics (e.g. Aminoglycosides, Cephalosporins, Chloramphenicol, Clindamycin, Erythromycins, Fluoroquinolones, Macrolides, Azolides, Metronidazole, Penicillin's, Tetracycline's, Trimethoprim-sulfamethoxazole, Vancomycin), steroids (e.g. Andranes (e.g. Testosterone), Cholestanes (e.g. Cholesterol), Cholic acids (e.g. Cholic acid), Corticosteroids (e.g. Dexamethasone), Estraenes (e.g. Estradiol), Pregnanes (e.g. Progesterone), narcotic and non-narcotic analgesics (e.g. Morphine, Codeine, Heroin, Hydromorphone, Levorphanol, Meperidine, Methadone, Oxydone, Propoxyphene, Fentanyl, Methadone, Naloxone, Buprenorphine, Butorphanol, Nalbuphine, Pentazocine), chemotherapy (e.g. anti-cancer drugs such as but not limited to Altretamine, Asparaginase, Bleomycin, Busulfan, Carboplatin, Carmustine, Chlorambucil, Cisplatin, Cladribine, Cyclophosphamide, Cytarabine, Dacarbazine, Diethylstilbesterol, Ethinyl estradiol, Etoposide, Floxuridine, Fludarabine, Fluorouracil, Flutamide, Goserelin, Hydroxyurea, Idarubicin, Ifosfamide, Leuprolide, Levamisole, Lomustine, Mechlorethamine, Medroxyprogesterone, Megestrol, Melphalan, Mercaptopurine, Methotrexate, Mitomycin, Mitotane, Mitoxantrone, Paclitaxel, pentastatin, Pipobroman, Plicamycin, Prednisone, Procarbazine, Streptozocin, Tamoxifen, Teniposide, Vinblastine, Vincristine), anti-inflammatory agents (e.g. Alclofenac; Alclometasone Dipropionate; Algestone Acetonide; alpha Amylase; Amcinafal; Amcinafide; Amfenac Sodium; Amiprilose Hydrochloride; Anakinra; Anirolac; Anitrazafen; Apazone; Balsalazide Disodium; Bendazac; Benoxaprofen; Benzydamine Hydrochloride; Bromelains; Broperamole; Budesonide; Carprofen; Cicloprofen; Cintazone; Cliprofen; Clobetasol Propionate; Clobetasone Butyrate; Clopirac; Cloticasone Propionate; Cormethasone Acetate; Cortodoxone; Decanoate; Deflazacort; Delatestryl; Depo-Testosterone; Desonide; Desoximetasone; Dexamethasone Dipropionate; Diclofenac Potassium; Diclofenac Sodium; Diflorasone Diacetate; Diflumidone Sodium; Diflunisal; Difluprednate; Diftalone; Dimethyl Sulfoxide; Drocinonide; Endrysone; Enlimomab; Enolicam Sodium; Epirizole; Etodolac; Etofenamate; Felbinac; Fenamole; Fenbufen; Fenclofenac; Fenclorac; Fendosal; Fenpipalone; Fentiazac; Flazalone; Fluazacort; Flufenamic Acid; Flumizole; Flunisolide Acetate; Flunixin; Flunixin Meglumine; Fluocortin Butyl; Fluorometholone Acetate; Fluquazone; Flurbiprofen; Fluretofen; Fluticasone Propionate; Furaprofen; Furobufen; Halcinonide; Halobetasol Propionate; Halopredone Acetate; Ibufenac; Ibuprofen; Ibuprofen Aluminum; Ibuprofen Piconol; Ilonidap; Indomethacin; Indomethacin Sodium; Indoprofen; Indoxole; Intrazole; Isoflupredone Acetate; Isoxepac; Isoxicam; Ketoprofen; Lofemizole Hydrochloride; Lomoxicam; Loteprednol Etabonate; Meclofenamate Sodium; Meclofenamic Acid; Meclorisone Dibutyrate; Mefenamic Acid; Mesalamine; Meseclazone; Mesterolone; Methandrostenolone; Methenolone; Methenolone Acetate; Methylprednisolone Suleptanate; Morniflumate; Nabumetone; Nandrolone; Naproxen; Naproxen Sodium; Naproxol; Nimazone; Olsalazine Sodium; Orgotein; Orpanoxin; Oxandrolane; Oxaprozin; Oxyphenbutazone; Oxymetholone; Paranyline Hydrochloride; Pentosan Polysulfate Sodium; Phenbutazone Sodium Glycerate; Pirfenidone; Piroxicam; Piroxicam Cinnamate; Piroxicam Olamine; Pirprofen; Prednazate; Prifelone; Prodolic Acid; Proquazone; Proxazole; Proxazole Citrate; Rimexolone; Romazarit; Salcolex; Salnacedin; Salsalate; Sanguinarium Chloride; Seclazone; Sermetacin; Stanozolol; Sudoxicam; Sulindac; Suprofen; Talmetacin; Talniflumate; Talosalate; Tebufelone; Tenidap; Tenidap Sodium; Tenoxicam; Tesicam; Tesimide; Testosterone; Testosterone Blends; Tetrydamine; Tiopinac; Tixocortol Pivalate; Tolmetin; Tolmetin Sodium; Triclonide; Triflumidate; Zidometacin; Zomepirac Sodium), or anti-histaminic agents (e.g. Ethanolamines (like diphenhydrmine carbinoxamine), Ethylenediamine (like tripelennamine pyrilamine), Alkylamine (like chlorpheniramine, dexchlorpheniramine, brompheniramine, triprolidine), other anti-histamines like astemizole, loratadine, fexofenadine, Bropheniramine, Clemastine, Acetaminophen, Pseudoephedrine, Triprolidine).
Preparative thin layer chromatography (PTLC) separations described herein were typically performed on 20×20 cm plates (500 micron thick silica gel).
Chromatographic purifications were typically performed using Biotage Isolera One automated system running Biotage Isolera One 2.0.6 software (Biotage LLC, Charlotte, N.C.). Flow rates were the default values specified for the particular column in use. Reverse phase chromatography was performed using elution gradients of water and acetonitrile on KP-C18-HS Flash+ columns (Biotage LLC) of various sizes. Typical loading was between 1:50 and 1:1000 crude sample: RP SiO2 by weight. Normal phase chromatography was performed using elution gradients of various solvents (e.g. hexane, ethyl acetate, methylene chloride, methanol, acetone, chloroform, MTBE, etc.). The columns were SNAP Cartridges containing KP-SIL or SNAP Ultra (25 μm spherical particles) of various sizes (Biotage LLC). Typical loading was between 1:10 to 1:150 crude sample: SiO2 by weight. Alternatively, silica gel chromatography was performed on a Biotage Horizon flash chromatography system.
1H NMR analyses of intermediates and exemplified compounds were typically performed on an Agilent Technologies 400/54 or Broker Ascend™ 400 spectrometer (operating at 400 MHz) at 298° K following standard operating procedure suggested by manufacturer. Reference frequency was set using TMS as an internal standard. Typical deuterated solvents were utilized as indicated in the individual examples.
LCMS analysis were typically performed using one of the two conditions listed below:
(1) LCMS spectra were taken on an Agilent Technologies 1260 Infinity coupled to 6120 Quadrupole spectrometer. The mobile phase for the LC was acetontrile (A) and water (B) with 0.01% formic acid, and the eluent gradient was from 5-95% A in 6.0 min, 60-95% A in 5.0 min, 80-100% A in 5.0 min and 85-100% A in 10 min using a SBC18 50 mm×4.6 mm×2.7 capillary column. Mass spectra (MS) were measured by electrospray ion-mass spectroscopy (ESI). All temperatures are in degrees Celsius unless otherwise noted.
(2) LCMS analysis of intermediates and exemplified compounds was performed on an Agilent Technologies 1200 Series HPLC system coupled to an Agilent Technologies 6150 Quadrapole LC/MS detector. Analytes were detected by UV absorbance at 220 and 254 nm. Analyte ions were detected by mass spectrometry in both negative and positive modes (110-800 amu scan range, API-ES ionization). A long HPLC method was run on a Phenomenex® Kinetex 2.6μ C18 100 Å, 30×3.00 mm column. The column temperature was set at 40° C. UV absorptions were detected at 220 and 254 nm. Samples were prepared as a solution in about 1:1 (v/v) acetonitrile:water mixture. Flow rate was about 0.80 mL/minute. Elution solvents were acetonitrile and water each containing 0.1% formic acid. In a typical run, a linear gradient starting with 5% acetonitrile and 95% water and ending with 95% acetonitrile and 5% water over 12 minutes was carried out. At the end of each run, the column was washed with 95% acetonitrile and 5% water for 2 minutes.
Typically, analytical HPLC mass spectrometry conditions were as follows:
LC1: Column: SB-C18 50 mm×4.6 mm×2.7 μm; Temperature: 50° C.; Eluent: 5:95 v/v acetonitrile/water+0.1% formic acid in 3 min; Flow Rate: 1.5 mL/min; Injection 5 Detection: PDA, 200-600 nm; MS: mass range 150-750 amu; positive or negative ion electrospray ionization.
LC2: Column: SB-C18 50 mm×4.6 mm×2.7 μm; Temperature: 50° C.; Eluent: 5:95 to 95:5 v/v acetonitrile/water+0.05% TFA over 3.00 min; Flow Rate: 1.5 mL/min; Injection 5 μL; Detection: PDA, 200-600 nm; MS: mass range 150-750 amu; positive ion electrospray ionization.
LC3: Column: SB-C18 50 mm×4.6 mm×2.7 μm; Temperature: 50° C.; Eluent: 10:90 to 98:2 v acetonitrile/water+0.05% TFA over 3.75 min; Flow Rate: 1.0 mL/min; Injection 10 μL; Detection: PDA, 200-600 nm; MS: mass range 150-750 amu; positive ion electrospray ionization.
Preparative HPLC were carried out with one of the two conditions listed below:
Condition 1: GILSON Preparative HPLC System; Column: SHISEIDO CAPCELL PAK, MG; C18, 20 mm×250 mm, 5 m; Mobile phase: Water+0.1% trifluoroacetic acid; ACN+0.1% trifluoroacetic acid; Method: 15 minutes gradient elution; Initial organic: 10%; Final organic: 80%; UV1: 240; UV2: 230; Flow: 15 ml/min.
Condition 2: GILSON Preparative HPLC System; Column: SunFire® Prep C18 OBD™ 5 uM, 19 mm×150 mm; Mobile phase: Water+0.1% trifluoroacetic acid; ACN+0.1% trifluoroacetic acid; Method: 20 minutes gradient elution; Initial organic: 10%; Final organic: 80%; UV1: 220; UV2: 254; Flow: 15 ml/min.
Compound names were generated with ChemDraw Professional or OpenEye Scientific Software's mol2nam application.
Step A: A mixture of ((((3aR,4R,6R,6aR)-6-(6-chloro-5-cyano-4-(cyclopentylamino)-1H-pyrrolo[2,3-b]pyridin-1-yl)-2,2-dimethyltetrahydrofuro[3,4-d][1,3]dioxol-4-yl)methoxy)methyl)phosphonic acid (0.27 g, 0.51 mmol), silver oxide (Ag2O) (0.71 g, 3.07 mmol) and methanol, 1-chloro-, 1-acetate (222 mg, 2.1 mmol) in N,N-dimethylformamide (4 mL) was heated at 70° C. for 4 h. The reaction mixture was diluted with EtOAc, filtered through celite. The organic layer was dried over Na2SO4, filtered, and concentrated. The residue was purified by reverse phase column chromatography with CH3CN/water (20% to 90%) to give ((((((3aR,4R,6R,6aR)-6-(6-chloro-5-cyano-4-(cyclopentylamino)-1H-pyrrolo[2,3-b]pyridin-1-yl)-2,2-dimethyltetrahydrofuro[3,4-d][1,3]dioxol-4-yl)methoxy)methyl)phosphoryl)bis(oxy))bis(methylene) diacetate. LCMS ESI (+) m/z 671 (M+H).
Step B: A mixture of ((((((3aR,4R,6R,6aR)-6-(6-chloro-5-cyano-4-(cyclopentylamino)-1H-pyrrolo[2,3-b]pyridin-1-yl)-2,2-dimethyltetrahydrofuro[3,4-d][1,3]dioxol-4-yl)methoxy)methyl)phosphoryl)bis(oxy))bis(methylene) diacetate in 80% aqueous formic acid (5 mL) was stirred at room temperature for 2 h. The reaction mixture was concentrated with a stream of nitrogen and purified by preparative HPLC with CH3CN/water (5% to 95% with 0.1% TFA) to give ((((((2R,3S,4R,5R)-5-(6-chloro-5-cyano-4-(cyclopentylamino)-1H-pyrrolo[2,3-b]pyridin-1-yl)-3,4-dihydroxytetrahydrofuran-2-yl)methoxy)methyl)phosphoryl)bis(oxy))bis(methylene) diacetate (30 mg). LCMS ESI (+) m/z 631 (M+H).
Step A: A mixture of silver oxide (0.71 g, 3.1 mmol), (((((3aS,4S,6R,6aR)-6-(6-chloro-5-cyano-4-(cyclopentylamino)-1H-pyrrolo[2,3-b]pyridin-1-yl)-2,2-dimethyltetrahydrofuro[3,4-d][1,3]dioxol-4-yl)methyl)thio)methyl)phosphonic acid (0.27 g, 0.51 mmol), and chloromethyl acetate (334 mg, 3.1 mmol) in N,N-dimethylformamide (4 mL) were heated at 70° C. for 4 h. After cooling to room temperature, the reaction mixture was diluted with EtOAc and filtered through celite. The filtrate was washed with brine, dried over Na2SO4, filtered and concentrated. The residue was purified by reverse phase column chromatography with CH3CN/water (20% to 90%) to give (((((((3aS,4S,6R,6aR)-6-(6-chloro-5-cyano-4-(cyclopentylamino)-1H-pyrrolo[2,3-b]pyridin-1-yl)-2,2-dimethyltetrahydrofuro[3,4-d][1,3]dioxol-4-yl)methyl)thio)methyl)phosphoryl)bis(oxy))bis(methylene) diacetate. LCMS ESI (+) m/z 687 (M+H).
Step B: To a solution of (((((((3aS,4S,6R,6aR)-6-(6-chloro-5-cyano-4-(cyclopentylamino)-1H-pyrrolo[2,3-b]pyridin-1-yl)-2,2-dimethyltetrahydrofuro[3,4-d][1,3]dioxol-4-yl)methyl)thio)methyl)phosphoryl)bis(oxy))bis(methylene) diacetate in a mixture of acetonitrile (6 mL)/water (2 mL) was added Oxone® (400 mg, 1.3 mmol). The reaction mixture was stirred at room temperature for 6 h, diluted with water, and extracted with EtOAc. The organic layer was dried over Na2SO4, filtered, and concentrated. The residue was purified by flash column chromatography with CH3CN/water (20% to 90%) to give (((((((3aS,4S,6R,6aR)-6-(6-chloro-5-cyano-4-(cyclopentylamino)-1H-pyrrolo[2,3-b]pyridin-1-yl)-2,2-dimethyltetrahydrofuro[3,4-d][1,3]dioxol-4-yl)methyl)sulfonyl)methyl)phosphoryl)bis(oxy))bis(methylene) diacetate. LCMS ESI (+) m/z 719 (M+H).
Step C: A mixture of (((((((3aS,4S,6R,6aR)-6-(6-chloro-5-cyano-4-(cyclopentylamino)-1H-pyrrolo[2,3-b]pyridin-1-yl)-2,2-dimethyltetrahydrofuro[3,4-d][1,3]dioxol-4-yl)methyl)sulfonyl)methyl)phosphoryl)bis(oxy))bis(methylene) diacetate in 80% aqueous formic acid (5 mL) was stirred at room temperature for 2 h. The reaction mixture was concentrated with a stream of nitrogen and purified by preparative HPLC with CH3CN/water (5% to 95% with 0.1% TFA) to give (((((((2S,3S,4R,5R)-5-(6-chloro-5-cyano-4-(cyclopentylamino)-1H-pyrrolo[2,3-b]pyridin-1-yl)-3,4-dihydroxytetrahydrofuran-2yl)methyl)sulfonyl)methyl)phosphoryl)bis(oxy))bis(methylene) diacetate (25 mg). LCMS ESI (+) m/z 679 (M+H).
Step A: A mixture of rhodium acetate dimer (0.04 g, 0.09 mmol), 6-chloro-4-(hexahydrocyclopenta[c]pyrrol-2(1H)-yl)-1-((3aR,4R,6R,6aR)-6-(hydroxymethyl)-2,2-dimethyltetrahydrofuro[3,4-d][1,3]dioxol-4-yl)-1H-pyrrolo[2,3-b]pyridine-5-carbonitrile (0.4 g, 0.87 mmol), and ethyl 2-diazo-2-diethoxyphosphoryl-acetate (0.87 g, 3.5 mmol) in degassed anhydrous toluene (40 mL) was heated at 95° C. overnight. The reaction mixture was concentrated under reduced pressure. The residue was purified by flash column chromatography with EtOAc/hexane (50% to 100%) to give ethyl 2-(((3aR,4R,6R,6aR)-6-(6-chloro-5-cyano-4-(hexahydrocyclopenta[c]pyrrol-2(1H)-yl)-1H-pyrrolo[2,3-b]pyridin-1-yl)-2,2-dimethyltetrahydrofuro[3,4-d][1,3]dioxol-4-yl)methoxy)-2-(diethoxyphosphoryl)acetate. LCMS ESI (+) m/z 681 (M+H).
Step B: To a solution of ethyl 2-(((3aR,4R,6R,6aR)-6-(6-chloro-5-cyano-4-(hexahydrocyclopenta[c]pyrrol-2(1H)-yl)-1H-pyrrolo[2,3-b]pyridin-1-yl)-2,2-dimethyltetrahydrofuro[3,4-d][1,3]dioxol-4-yl)methoxy)-2-(diethoxyphosphoryl)acetate (0.88 g, 1.3 mmol) in THF (5 mL) at room temperature was added lithium borohydride (1.0 M in THF, 4.15 mL, 4.15 mmol). The reaction mixture was stirred at room temperature for 3 h, quenched carefully with saturated aqueous NaH2PO4, and extracted with EtOAc. The organic layer was dried over MgSO4, filtered, and concentrated. The residue was purified by flash column chromatography with MeOH/EtOAc (0% to 5%) to give diethyl (1-4(3aR,4R,6R,6aR)-6-(6-chloro-5-cyano-4-(hexahydrocyclopenta[c]pyrrol-2(1H)-yl)-1H-pyrrolo[2,3-b]pyridin-1-yl)-2,2-dimethyltetrahydrofuro[3,4-d][1,3]dioxol-4-yl)methoxy)-2-hydroxyethyl)phosphonate (300 mg) as a mixture of diastereomers. LCMS ESI (+) m/z 639 (M+H). One of the diastereomers was separated and used in the next step.
Step C: A mixture of diethyl ((1S)-1-(((3aR,4R,6R,6aR)-6-(6-chloro-5-cyano-4-(hexahydrocyclopenta[c]pyrrol-2(1H)-yl)-1H-pyrrolo[2,3-b]pyridin-1-yl)-2,2-dimethyltetrahydrofuro[3,4-d][1,3]dioxol-4-yl)methoxy)-2-hydroxyethyl)phosphonate (30 mg, 0.05 mmol), 2,6-lutidine (0.16 mL, 1.4 mmol), and bromotrimethylsilane (0.19 mL, 1.41 mmol) in anhydrous CH3CN (3 mL) was stirred at room temperature overnight. The reaction mixture was concentrated under reduced pressure, diluted with CH3OH and concentrated. The residue was dissolved in 80% aqueous formic acid (5 mL) and stirred at room temperature for 2.5 h. The reaction mixture was concentrated under a stream of nitrogen. The residue was purified by prep HPLC with CH3CN/water (5% to 95% with 0.1% TFA) to give ((1S)-1-(((2R,3S,4R,5R)-5-(6-chloro-5-cyano-4-(hexahydrocyclopenta[c]pyrrol-2(1H)-yl)-1H-pyrrolo[2,3-b]pyridin-1-yl)-3,4-dihydroxytetrahydrofuran-2-yl)methoxy)-2-hydroxyethyl)phosphonic acid (1.5 mg). LCMS ESI (+) m/z 543 (M+H).
Step A: A mixture of ((((3aR,4R,6R,6aR)-6-(6-chloro-5-cyano-4-(cyclopentylamino)-1H-pyrrolo[2,3-b]pyridin-1-yl)-2,2-dimethyltetrahydrofuro[3,4-d][1,3]dioxol-4-yl)methoxy)methyl)phosphonic acid (0.2 g, 0.38 mmol), chloromethyl 3-(allyl oxy)-2,2-dimethylpropanoate (0.235 g, 1.14 mmol), and silver oxide (Ag2O) (0.44 g, 1.9 mmol) in N,N-dimethylformamide (5 mL) was stirred at 70° C. for 4 h. The reaction mixture was diluted with EtOAc, filtered through celite, washed with brine, and dried over Na2SO4. The filtrate was concentrated under reduced pressure. The residue was purified by flash column chromatography with EtOAc/hexane (10% to 60%) to give ((((((3aR,4R,6R,6aR)-6-(6-chloro-5-cyano-4-(cyclopentylamino)-1H-pyrrolo[2,3-b]pyridin-1-yl)-2,2-dimethyltetrahydrofuro[3,4-d][1,3]dioxol-4-yl)methoxy)methyl)phosphoryl)bis(oxy))bis(methylene) bis(3-(allyloxy)-2,2-dimethylpropanoate) (85 mg). LCMS ESI (+) m/z 867 (M+H).
Step B: A mixture of ((((((3aR,4R,6R,6aR)-6-(6-chloro-5-cyano-4-(cyclopentylamino)-1H-pyrrolo[2,3-b]pyridin-1-yl)-2,2-dimethyltetrahydrofuro[3,4-d][1,3]dioxol-4-yl)methoxy)methyl)phosphoryl)bis(oxy))bis(methylene) bis(3-(allyloxy)-2,2-dimethylpropanoate) and (1,3-bis-(2,4,6-trimethylphenyl)-2-imidazolidinylidene)dichloro(o-isopropoxyphenylmethylene)ruthenium (10 mg) in degassed toluene (100 mL) was heated at 80° C. overnight. The reaction mixture was concentrated under reduced pressure. The residue was purified by flash column chromatography with EtOAc/hexane (0% to 80%) to give 6-chloro-4-(cyclopentylamino)-1-((3aR,4R,6R,6aR)-2,2-dimethyl-6-(((7,7,16,16-tetramethyl-2-oxido-6,17-dioxo-1,3,5,9,14,18-hexaoxa-2-phosphacyclononadec-11-en-2-yl)methoxy)methyl)tetrahydrofuro[3,4-d][1,3]dioxol-4-yl)-1H-pyrrolo[2,3-b]pyridine-5-carbonitrile (0.07 g). LCMS ESI (+) m/z 839 (M+H).
Step C: A mixture of 6-chloro-4-(cyclopentylamino)-1-((3aR,4R,6R,6aR)-2,2-dimethyl-6-(((7,7,16,16-tetramethyl-2-oxido-6,17-dioxo-1,3,5,9,14,18-hexaoxa-2-phosphacyclononadec-11-en-2-yl)methoxy)methyl)tetrahydrofuro[3,4-d][1,3]dioxol-4-yl)-1H-pyrrolo[2,3-b]pyridine-5-carbonitrile and PtO2 (10 mg) in methanol (5 mL) was stirred under hydrogen (1 atmosphere) for 2 h. The reaction mixture was filtered through celite and concentrated. The residue was used in the next step without further purification.
Step D: A mixture of 6-chloro-4-(cyclopentylamino)-1-((3aR,4R,6R,6aR)-2,2-dimethyl-6-(((7,7,16,16-tetramethyl-2-oxido-6,17-dioxo-1,3,5,9,14,18-hexaoxa-2-phosphacyclononadecan-2-yl)methoxy)methyl)tetrahydrofuro[3,4-d][1,3]dioxol-4-yl)-1H-pyrrolo[2,3-b]pyridine-5-carbonitrile (crude from Step C) in aqueous formic acid (80%) was stirred at room temperature for 1.5 h. The reaction mixture was directly purified by prep HPLC with water/CH3CN (5% to 95% with 0.1% TFA) to give 6-chloro-4-(cyclopentylamino)-1-((2R,3R,4S,5R)-3,4-dihydroxy-5-(((7,7,16,16-tetramethyl-2-oxido-6,17-dioxo-1,3,5,9,14,18-hexaoxa-2-phosphacyclononadecan-2-yl)methoxy)methyl)tetrahydrofuran-2-yl)-1H-pyrrolo[2,3-b]pyridine-5-carbonitrile (4.1 mg). LCMS ESI (+) m/z 801 (M+H).
Step A: Preparation of 4-chloro-5-cyano-1H-pyrrolo[2,3-b]pyridine 7-oxide: A suspension of 4-chloro-1H-Pyrrolo[2,3-b]pyridine-5-carbonitrile (10.0 g, 56.3 mmol) in ethyl acetate (150 mL) was added 3-chloroperbenzoic acid (18.9 g, 84.5 mmol) at ambient temperature. After addition, the reaction mixture was stirred at 52° C. (bath) for 3 hours. After cooling to ambient temperature, hexane (110 mL) was added and the mixture was stirred at ambient temperature for 10 minutes. Solid was collected by filtration, washed with MTBE and dried to give 4-chloro-7-oxo-1H-pyrrolo[2,3-b]pyridine-5-carbonitrile (8.2 g, 75%) as a solid. LCMS ESI (+) m/z 194 (M+H)
Step B: Preparation of 4,6-dichloro-1H-pyrrolo[2,3-b]pyridine-5-carbonitrile: A suspension of 4-chloro-7-oxo-1H-pyrrolo[2,3-b]pyridine-5-carbonitrile (8.2 g, 42.4 mmol), in NMP (80 mL) was added phosphorus (V) oxychloride (7.9 mL, 84.7 mmol) at 0° C. After addition, the reaction mixture was stirred at 0° C. for 1 hour. Ice-water (300 mL) was added and the mixture was stirred at ambient temperature for 30 minutes. Solid was collected by filtration, washed with water and dried to give 4,6-dichloro-1H-pyrrolo[2,3-b]pyridine-5-carbonitrile (9.0 g, 99%) as pink solid. LCMS ESI (−) m/z 210 (M−H).
Step C: Preparation of 6-chloro-4-(cyclopentylamino)-1H-pyrrolo[2,3-b]pyridine-5-carbonitrile: A mixture of triethyl amine (11.7 mL, 84.4 mmol), cyclopentanamine (10.8 g, 126.6 mmol) and 4,6-dichloro-1H-pyrrolo[2,3-b]pyridine-5-carbonitrile (8.95 g, 42.2 mmol) in NMP (40 mL) was stirred at 100° C. for 2 hours. After cooling to ambient temperature, water (200 mL) was added. The mixture was stirred at ambient temperature for 30 minutes. Solid was collected by filtration and washed with water, then dried. The resulting solid was suspended in IPA (60 mL) and stirred at ambient temperature for 30 minutes. The solid was collected by filtration, washed with IPA (20 mL) and dried to give 6-chloro-4-(cyclopentylamino)-1H-pyrrolo[2,3-b]pyridine-5-carbonitrile (9.3 g, 85%) as a solid. LCMS ESI (+) m/z 261 (M+H).
Step D: Preparation of 6-chloro-4-(cyclopentylamino)-1-((3aR,4R,6R,6aR)-6-(hydroxymethyl)-2,2-dimethyltetrahydrofuro[3,4-d][1,3]dioxol-4-yl)-1H-pyrrolo[2,3-b]pyridine-5-carbonitrile: (3aR,6R,6aR)-6-[[tert-butyl(dimethyl)silyl]oxymethyl]-2,2-dimethyl-3a,4,6,6a-tetrahydrofuro[3,4-d][1,3]dioxol-4-ol (5.7 g, 18.7 mmol) and carbon tetrachloride (1.99 mL, 20.6 mmol) was dissolved in toluene (50 mL) and the mixture was cooled to −10° C. Tris(dimethylamino)phosphine (3.6 mL, 19.7 mmol) was added slowly at −10° C. After addition, the mixture was stirred at 0˜−10° C. for 1 hour. Water (50 mL) was added. The organic layer was separated, dried (sodium sulfate), filtered and concentrated under reduced pressure to give tert-butyl(((3aR,4R,6R,6aR)-6-chloro-2,2-dimethyltetrahydrofuro[3,4-d][1,3]dioxol-4-yl)methoxy)dimethylsilane. The residue obtained was dissolved in acetonitrile (10 mL) which was used directly in the next step.
In a separate round bottom flask, 6-chloro-4-(cyclopentylamino)-1H-pyrrolo[2,3-b]pyridine-5-carbonitrile (2.44 g, 9.4 mmol) was dissolved in acetonitrile (25 mL). The mixture was cooled to 0° C. and sodium hydride, 60% dispersion in mineral oil (0.77 g, 19.2 mmol) was added. After addition, the mixture was warmed to ambient temperature and stirred at ambient temperature for 1 hour. A solution of the ribose mixture prepared above was added at ambient temperature and the reaction mixture was stirred at ambient temperature for 20 hours. Ice-water (30 mL) and MTBE (30 mL) were added. The organic layer was separated, washed with brine, dried (sodium sulfate) and concentrated under reduced pressure. The residue obtained was dissolved in THF (10 mL) and a solution of tetrabutyl ammonium fluoride (1.0 M in THF) (21.5 mL, 21.5 mmol) was added and the mixture was stirred at ambient temperature for 1 hour. Saturated sodium bicarbonate solution (20 mL) and ethyl acetate (20 mL) were added. The organic layer was separated, dried (sodium sulfate), filtered and concentrated under reduced pressure. The residue obtained was purified by flash chromatography on silica gel 5:1 DCM/ethyl acetate to give 1-[(3aR,4R,6R,6aR)-6-(hydroxymethyl)-2,2-dimethyl-3a,4,6,6a-tetrahydrofuro[3,4-d][1,3]dioxol-4-yl]-6-chloro-4-(cyclopentylamino)pyrrolo[2,3-b]pyridine-5-carbonitrile (2.27 g, 56%) as a solid. LCMS ESI (+) m/z 433 (M+H).
Step E: Preparation of diethyl ((((3aR,4R,6R,6aR)-6-(6-chloro-5-cyano-4-(cyclopentylamino)-1H-pyrrolo[2,3-b]pyridin-1-yl)-2,2-dimethyltetrahydrofuro[3,4-d][1,3]dioxol-4-yl)methoxy)methyl)phosphonate: A mixture of 1-[(3aR,4R,6R,6aR)-6-(hydroxymethyl)-2,2-dimethyl-3a,4,6,6a-tetrahydrofuro[3,4-d][1,3]dioxol-4-yl]-6-chloro-4-(cyclopentylamino)pyrrolo[2,3-b]pyridine-5-carbonitrile (3.07 g, 7.1 mmol), (diethoxyphosphoryl)methyl 4-methylbenzenesulfonate (4.57 g, 14.2 mmol) and magnesium tert-butoxide (4.84 g, 28.4 mmol) in dimethyl sulfoxide (20 mL) was stirred at 70° C. (bath) for 4 hours. After cooling to ambient temperature, saturated ammonium chloride solution (40 mL) and 1:1 MTBE/ethyl acetate (40 mL) were added. The organic layer was separated, washed with brine, dried (sodium sulfate), filtered and concentrated under reduced pressure. The residue obtained was purified by flash chromatography on silica gel 10:1 ethyl acetate/methanol to give diethyl ((((3aR,4R,6R,6aR)-6-(6-chloro-5-cyano-4-(cyclopentylamino)-1H-pyrrolo[2,3-b]pyridin-1-yl)-2,2-dimethyltetrahydrofuro[3,4-d][1,3]dioxol-4-yl)methoxy)methyl)phosphonate (2.87 g, 69%) as an oil. LCMS ESI (+) m/z 583 (M+H).
Step F: Preparation of ((((2R,3S,4R,5R)-5-(6-chloro-5-cyano-4-(cyclopentylamino)-1H-pyrrolo[2,3-b]pyridin-1-yl)-3,4-di hydroxytetrahydrofuran-2-yl)m ethoxy)methyl)phosphonic acid: Diethyl ((((3aR,4R,6R,6aR)-6-(6-chloro-5-cyano-4-(cyclopentylamino)-1H-pyrrolo[2,3-b]pyridin-1-yl)-2,2-dimethyltetrahydrofuro[3,4-d][1,3]dioxol-4-yl)methoxy)methyl)phosphonate (0.030 g, 0.051 mmol) in DCM (1 mL) was added bromotrimethyl silane (0.06 mL, 0.54 mmol) and 2,6-lutidine (0.064 mL, 0.54 mmol). The mixture was stirred at ambient temperature overnight. Solvent was removed under reduced pressure, and azeotroped with MeOH, two times. The residue obtained was dissolved in 80% aqueous formic acid solution (1 mL) and stirred at ambient temperature for 3 hours. Solvent was removed under reduced pressure. The residue obtained was purified by reverse phase HPLC (5 to 90% MeCN/H2O, 0.1% TFA) to give ((((2R,3S,4R,5R)-5-(6-chloro-5-cyano-4-(cyclopentylamino)-1H-pyrrolo[2,3-b]pyridin-1-yl)-3,4-dihydroxytetrahydrofuran-2-yl)methoxy)methyl)phosphonic acid (0.010 g, 30%) as a solid. LCMS ESI (+) m/z 487 (M+H).
Step A: Preparation of 6-chloro-4-(3,3-difluoropyrrolidin-1-yl)-1H-pyrrolo[2,3-b]pyridine-5-carbonitrile: To a solution of 4,6-dichloro-1H-pyrrolo[2,3-b]pyridine-5-carbonitrile (1.0 g, 4.7 mmol) in 1-methyl-2-pyrrolidone (4 mL) was added 3,3-difluoropyrrolidine (0.56 g, 5.2 mmol) and triethylamine (1.2 g, 11.8 mmol). The mixture was stirred at 100° C. for 14 hours, then the mixture was allowed to cool to ambient temperature; water was added and the mixture was stirred at ambient temperature for 30 minutes. Solid was collected by filtration, washed with water, MTBE and dried to give 6-chloro-4-(3,3-difluoropyrrolidin-1-yl)-1H-pyrrolo[2,3-b]pyridine-5-carbonitrile (1.1 g, 82%) as a solid. LCMS ESI (−) m/z 281 (M−H).
Step B: Preparation of 1-[(3aR,4R,6R,6aR)-6-(hydroxymethyl)-2,2-dimethyl-3a,4,6,6a-tetrahydrofuro[3,4-d][1,3]dioxol-4-yl]-6-chloro-4-(3,3-difluoropyrrolidin-1-yl)pyrrolo[2,3-b]pyridine-5-carbonitrile: To a solution of 6-chloro-4-(3,3-difluoropyrrolidin-1-yl)-1H-pyrrolo[2,3-b]pyridine-5-carbonitrile (0.80 g, 2.8 mmol) in acetonitrile (3 mL) was added sodium hydride, 60% dispersion in mineral oil (0.23 g, 5.7 mmol) at 0° C. The resulting solution was stirred at ambient temperature for 30 min. [(3 aR,4R,6R,6aR)-4-chloro-2,2-dimethyl-3a,4,6,6a-tetrahydrofuro[3,4-d][1,3]dioxol-6-yl]methoxy-tert-butyl-dimethyl-silane (1.8 g, 5.7 mmol) in acetonitrile (2 mL) was added. The reaction was stirred at ambient temperature for 16 hours. The mixture was concentrated under reduced pressure and diluted with 10 mL of ethyl acetate, washed with brine, dried (sodium sulfate), filtered and concentrated. The residue was dissolved in THF (3 mL) and 1.0 M TBAF (1.69 mL, 1.7 mmol) was added. The mixture was stirred at ambient temperature for 2 hours. The reaction mixture was diluted with ethyl acetate, and then filtered over celite. The filtrate was concentrated under reduced pressure. The residue was purified by flash chromatography on silica gel 1:1 hexane/ethyl acetate to give 1-[(3aR,4R,6R,6aR)-6-(hydroxymethyl)-2,2-dimethyl-3a,4,6,6a-tetrahydrofuro[3,4-d][1,3]dioxol-4-yl]-6-chloro-4-(3,3-difluoropyrrolidin-1-yl)pyrrolo[2,3-b]pyridine-5-carbonitrile (0.11 g, 28%) as a solid. LCMS ESI (+) m/z 455 (M+H).
Step C: Preparation of diethyl ((((3aR,4R,6R,6aR)-6-(6-chloro-5-cyano-4-(3,3-difluoropyrrolidin-1-yl)-1H-pyrrolo[2,3-b]pyridin-1-yl)-2,2-dimethyltetrahydrofuro[3,4-d][1,3]dioxol-4-yl)methoxy)methyl)phosphonate: To a solution of 1-[(3aR,4R,6R,6aR)-6-(hydroxymethyl)-2,2-dimethyl-3a,4,6,6a-tetrahydrofuro[3,4-d][1,3]dioxol-4-yl]-6-chloro-4-(3,3-difluoropyrrolidin-1-yl)pyrrolo[2,3-b]pyridine-5-carbonitrile (50.0 mg, 0.11 mmol) and (diethoxyphosphoryl)methyl 4-methylbenzenesulfonate (35.4 mg, 0.11 mmol) in DMSO (3 mL) was added magnesium tert-butoxide (75.2 mg, 0.44 mmol). The mixture was stirred at 80° C. for 3 hours. After cooling to ambient temperature, saturated ammonium chloride solution (10 mL) and MTBE (10 mL) were added. The organic layer was separated, washed with brine, dried (sodium sulfate), filtered and concentrated under reduced pressure. The residue was purified by PTLC 2:1 ethyl acetate/hexane to give diethyl ((((3aR,4R,6R,6aR)-6-(6-chloro-5-cyano-4-(3,3-difluoropyrrolidin-1-yl)-1H-pyrrolo[2,3-b]pyridin-1-yl)-2,2-dimethyltetrahydrofuro[3,4-d][1,3]dioxol-4-yl)methoxy)methyl)phosphonate (55 mg, 82%) as a solid.
Step D: Preparation of ((((2R,3S,4R,5R)-5-(6-chloro-5-cyano-4-(3,3-difluoropyrrolidin-1-yl)-1H-pyrrolo[2,3-b]pyridin-1-yl)-3,4-dihydroxytetrahydrofuran-2-yl)methoxy)methyl)phosphonic acid: To a mixture of diethyl ((((3aR,4R,6R,6aR)-6-(6-chloro-5-cyano-4-(3,3-difluoropyrrolidin-1-yl)-1H-pyrrolo[2,3-b]pyridin-1-yl)-2,2-dimethyltetrahydrofuro[3,4-d][1,3]dioxol-4-yl)methoxy)methyl)phosphonate (55 mg, 0.09 mmol) in dichloromethane (3 mL) were added 2,6-lutidine (194.8 mg, 1.82 mmol) and bromotrimethyl silane (278.4 mg, 1.82 mmol). The reaction mixture was stirred at ambient temperature overnight and then concentrated under reduced pressure. The residue was co-evaporated with acetonitrile twice to give the crude product, which was dissolved in 80% aqueous formic acid solution (3 mL) and stirred at ambient temperature for 2 hours. The mixture was concentrated under reduced pressure. The residue was purified by reverse phase HPLC (5 to 90% MeCN/H2O, 0.1% TFA) to give [(2R,3S,4R,5R)-5-[6-chloro-5-cyano-4-(3,3-difluoropyrrolidin-1-yl)pyrrolo[2,3-b]pyridin-1-yl]-3,4-dihydroxy-tetrahydrofuran-2-yl]methoxymethylphosphonic acid (29 mg, 63%) as a solid. LCMS ESI (−) m/z 507 (M−H).
Step A: Preparation of 6-chloro-4-((3S,4R)-3,4-difluoropyrrolidin-1-yl)-1H-pyrrolo[2,3-b]pyridine-5-carbonitrile: A mixture of triethylamine (2.36 mL, 17.0 mmol), (3S,4R)-3,4-difluoropyrrolidine hydrochloride (0.97 g, 6.79 mmol) and 4,6-dichloro-1H-pyrrolo[2,3-b]pyridine-5-carbonitrile (1.2 g, 5.66 mmol) in 1-methyl-2-pyrrolidone (5 mL) was stirred at 100° C. for 2 hours. After cooling to ambient temperature, water (40 mL) was added and stirred at ambient temperature for 30 minutes. The solid was collected by filtration and washed with water and dried. The resulting solid was stirred in MTBE (15 mL) at ambient temperature for 30 minutes. The solid was collected by filtration, washed with MTBE (10 mL) and dried to give 6-chloro-4-[(3R,4S)-3,4-difluoropyrrolidin-1-yl]-1H-pyrrolo[2,3-b]pyridine-5-carbonitrile (1.51 g, 94%) as a solid. LCMS ESI (+) m/z 283 (M+H).
Step B: Preparation of 6-chloro-4-((3S,4R)-3,4-difluoropyrrolidin-1-yl)-1-((3aR,4R,6R,6aR)-6-(hydroxymethyl)-2,2-dimethyltetrahydrofuro[3,4-d][1,3]dioxol-4-yl)-1H-pyrrolo[2,3-b]pyridine-5-carbonitrile: T a solution of (3aR,6R,6aR)-6-[[tert-butyl(dimethyl)silyl]oxymethyl]-2,2-dimethyl-3a,4,6,6a-tetrahydrofuro[3,4-d][1,3]dioxol-4-ol (3.25 g, 10.68 mmol) and carbon tetrachloride (1.14 mL, 11.75 mmol) in toluene (30 mL) was added tris(dimethylamino)phosphine (2.04 mL, 11.22 mmol) slowly at −10° C. After addition, the mixture was stirred at 0˜−10° C. for 1 hour. Water (20 mL) was added. The organic layer was separated, dried (sodium sulfate), filtered and concentrated under reduced pressure. The residue was dissolved in acetonitrile (5 mL) which was used directly in the next step.
In a separate round bottom flask, 6-chloro-4-[(3R,4S)-3,4-difluoropyrrolidin-1-yl]-1H-pyrrolo[2,3-b]pyridine-5-carbonitrile (1.51 g, 5.34 mmol) in acetonitrile (20 mL) was added sodium hydride, 60% dispersion in mineral oil (0.32 g, 8.01 mmol) at ambient temperature. The mixture was stirred at ambient temperature for 2 hours. The ribose mixture prepared above was added at ambient temperature and the reaction mixture was stirred at ambient temperature for 20 hours. Ice-water (30 mL) and MTBE (30 mL) were added. The organic layer was separated, washed with brine, dried (sodium sulfate) and concentrated under reduced pressure. The residue was dissolved in THF (10 mL) and triethylamine trihydrofluoride (2.61 mL, 16.03 mmol) was added at ambient temperature. After being stirred at ambient temperature for 5 hours, saturated sodium bicarbonate solution (20 mL) and ethyl acetate (20 mL) were added to the flask. The organic layer was separated, dried (sodium sulfate), filtered and concentrated under reduced pressure. The residue obtained was purified by flash chromatography on silica gel 1:1 hexane/ethyl acetate to give 6-chloro-4-((3S,4R)-3,4-difluoropyrrolidin-1-yl)-1-((3aR,4R,6R,6aR)-6-(hydroxymethyl)-2,2-dimethyltetrahydrofuro[3,4-d][1,3]dioxol-4-yl)-1H-pyrrolo[2,3-b]pyridine-5-carbonitrile (1.75 g, 72%) as a solid. LCMS ESI (+) m/z 455 (M+H).
Step C: Preparation of diethyl ((((3aR,4R,6R,6aR)-6-(6-chloro-5-cyano-4-((3S,4R)-3,4-difluoropyrrolidin-1-yl)-1H-pyrrolo[2,3-b]pyridin-1-yl)-2,2-dimethyltetrahydrofuro[3,4-d][1,3]dioxol-4-yl)methoxy)methyl)phosphonate: To a solution of 1-[(3aR,4R,6R,6aR)-6-(hydroxymethyl)-2,2-dimethyl-3a,4,6,6a-tetrahydrofuro[3,4-d][1,3]dioxol-4-yl]-6-chloro-4-[(3R,4S)-3,4-difluoropyrrolidin-1-yl]pyrrolo[2,3-b]pyridine-5-carbonitrile (52.0 mg, 0.11 mmol) and (diethoxyphosphoryl)methyl 4-methylbenzenesulfonate (90.0 mg, 0.28 mmol) in DMSO (3 mL) was added magnesium tert-butoxide (100.0 mg, 0.59 mmol). The mixture was stirred at 80° C. for 3 hours. After cooling to ambient temperature, saturated ammonium chloride solution and ethyl acetate were added. The organic layer was separated, dried (sodium sulfate), filtered and concentrated under reduced pressure. The residue was purified by PTLC (ethyl acetate:hexane=3:1) to give diethyl ((((3aR,4R,6R,6aR)-6-(6-chloro-5-cyano-4-((3S,4R)-3,4-difluoropyrrolidin-1-yl)-1H-pyrrolo[2,3-b]pyridin-1-yl)-2,2-dimethyltetrahydrofuro[3,4-d][1,3]dioxol-4-yl)methoxy)methyl)phosphonate (28 mg, 40%) as a solid.
Step D: Preparation of ((((2R,3S,4R,5R)-5-(6-chloro-5-cyano-4-((3S,4R)-3,4-difluoropyrrolidin-1-yl)-1H-pyrrolo[2,3-b]pyridin-1-yl)-3,4-dihydroxytetrahydrofuran-2-yl)methoxy)methyl)phosphonic acid: To a mixture of diethyl ((((3aR,4R,6R,6aR)-6-(6-chloro-5-cyano-4-((3S,4R)-3,4-difluoropyrrolidin-1-yl)-1H-pyrrolo[2,3-b]pyridin-1-yl)-2,2-dimethyltetrahydrofuro[3,4-d][1,3]dioxol-4-yl)methoxy)methyl)phosphonate (28.0 mg, 0.05 mmol) in dichloromethane (3 mL) were added 2,6-lutidine (80.0 mg, 0.75 mmol) and bromotrimethyl silane (120.0 mg, 0.78 mmol). The reaction mixture was stirred at ambient temperature overnight and then concentrated under reduced pressure. The residue was co-evaporated with acetonitrile twice to give the crude product, which was dissolved in 80% aqueous HCOOH solution (3 mL) and stirred at ambient temperature for 2 hours. The mixture was concentrated under reduced pressure and purified by reverse phase HPLC (0.05% TFA, 20% to 75% MeCN/H2O) to give [(2R,3S,4R,5R)-5-[6-chloro-5-cyano-4-[(3R,4S)-3,4-difluoropyrrolidin-1-yl]pyrrolo[2,3-b]pyridin-1-yl]-3,4-dihydroxy-tetrahydrofuran-2-yl]methoxymethylphosphonic acid (13 mg, 55%) as a solid. LCMS ESI (−) m/z 507 (M−H).
Step A: Preparation of diethyl (((((3aS,4S,6R,6aR)-6-(6-chloro-5-cyano-4-(cyclopentylamino)-1H-pyrrolo[2,3-b]pyridin-1-yl)-2,2-dimethyltetrahydrofuro[3,4-d][1,3]dioxol-4-yl)methyl)thio)methyl)phosphonate: 1-[(3aR,4R,6R,6aR)-6-(hydroxymethyl)-2,2-dimethyl-3a,4,6,6a-tetrahydrofuro[3,4-d][1,3]dioxol-4-yl]-6-chloro-4-(cyclopentylamino)pyrrolo[2,3-b]pyridine-5-carbonitrile (0.50 g, 1.2 mmol) and triethylamine (0.32 mL, 2.3 mmol) in dichloromethane (5.8 mL) was treated with methanesulfonyl chloride (0.18 mL, 2.3 mmol), then the mixture was stirred at ambient temperature for 2 hours. The reaction was quenched with saturated ammonium chloride solution. The aqueous separation was extracted with DCM (2×). The combined organic separations were washed with brine, then dried with MgSO4, filtered and concentrated to yield an orange oil. The oil was dissolved in DMF (8 mL), [amino(diethoxyphosphorylmethylsulfanyl)methylene]ammonium, 4-methylbenzenesulfonate (2.1 g, 5.3 mmol) and 21% sodium ethoxide in ethanol (3.9 mL, 10.4 mmol) were added at ambient temperature. The reaction mixture was stirred at ambient temperature overnight and then quenched with water and partitioned with ethyl acetate. The aqueous separation was extracted with ethyl acetate (3×). The combined organic separations were washed with brine, dried with MgSO4, filtered and then concentrated. The residue obtained was purified by flash chromatography on silica gel, 0 to 50% (3:1 EtOAc:EtOH)/hexanes to give diethyl (((((3aS,4S,6R,6aR)-6-(6-chloro-5-cyano-4-(cyclopentylamino)-1H-pyrrolo[2,3-b]pyridin-1-yl)-2,2-dimethyltetrahydrofuro[3,4-d][1,3]dioxol-4-yl)methyl)thio)methyl)phosphonate (0.44 g, 64%) as an oil. LCMS ESI (+) m/z 599 (M+H).
Step B: Preparation of diethyl (((((3aS,4S,6R,6aR)-6-(6-chloro-5-cyano-4-(cyclopentylamino)-1H-pyrrolo[2,3-b]pyridin-1-yl)-2,2-dimethyltetrahydrofuro[3,4-d][1,3]dioxol-4-yl)methyl)sulfonyl)methyl)phosphonate: Oxone® (0.076 g, 0.25 mmol) was added to a mixture of 1-[(3aR,4R,6S,6aS)-6-(diethoxyphosphorylmethylsulfanylmethyl)-2,2-dimethyl-3a,4,6,6a-tetrahydrofuro[3,4-d][1,3]dioxol-4-yl]-6-chloro-4-(cyclopentylamino)pyrrolo[2,3-b]pyridine-5-carbonitrile (49.3 mg, 0.08 mmol) in water (0.8 mL) and acetonitrile (0.8 mL). The reaction mixture was stirred at ambient temperature overnight. The mixture was diluted with ethyl acetate and water, and then separated. The aqueous phase was extracted with ethyl acetate (3×). The combined extracts were washed with brine, dried over MgSO4, filtered and concentrated. The residue obtained was purified by flash chromatography on silica gel with 0 to 100% (3:1 EtOAc:EtOH)/hexanes to give diethyl (((((3aS,4S,6R,6aR)-6-(6-chloro-5-cyano-4-(cyclopentylamino)-1H-pyrrolo[2,3-b]pyridin-1-yl)-2,2-dimethyltetrahydrofuro[3,4-d][1,3]dioxol-4-yl)methyl)sulfonyl)methyl)phosphonate (0.034 g, 67%) as an oil. LCMS ESI (+) m/z 631 (M+H).
Step C: Preparation of (((((2S,3S,4R,5R)-5-(6-chloro-5-cyano-4-(cyclopentylamino)-1H-pyrrolo[2,3-b]pyridin-1-yl)-3,4-di hydroxytetrahydrofuran-2-yl)methyl)sulfonyl)methyl)phosphonic acid: Diethyl (((((3aS,4S,6R,6aR)-6-(6-chloro-5-cyano-4-(cyclopentylamino)-1H-pyrrolo[2,3-b]pyridin-1-yl)-2,2-dimethyltetrahydrofuro[3,4-d][1,3]dioxol-4-yl)methyl)sulfonyl)methyl)phosphonate (0.035 g, 0.05 mmol) was dissolved in acetonitrile (0.18 mL) and then treated successively with 2,6-lutidine (0.04 mL, 0.32 mmol) and bromotrimethyl silane (0.04 mL, 0.32 mmol) at ambient temperature. The mixture was stirred at ambient temperature overnight. The reaction mixture was quenched with methanol and then concentrated. To the residue was added 80% aqueous formic acid solution (1 mL) and stirred at ambient temperature overnight. Solvent was removed under reduced pressure. The residue was purified by reverse phase HPLC (5 to 90% MeCN/H2O, 0.1% TFA) to give (((((2S,3S,4R,5R)-5-(6-chloro-5-cyano-4-(cyclopentylamino)-1H-pyrrolo[2,3-b]pyridin-1-yl)-3,4-dihydroxytetrahydrofuran-2-yl)methyl)sulfonyl)methyl)phosphonic acid (0.015 g, 50%) as a solid. LCMS ESI (+) m/z 535 (M+H). 1H NMR (400 MHz, CD3OD, δ): 7.43 (d, 1H), 6.82 (d, 1H), 6.17 (d, 1H), 4.62-4.58 (m, 1H), 4.50-4.44 (m, 2H), 4.29 (t, 1H), 4.09 (dd, 1H), 3.79-3.54 (m, 3H), 2.20-2.08 (m, 2H), 1.89-1.66 (m, 6H); 31P NMR (162 MHz, CD3OD, δ): 2.63.
Step A: To a solution of P, P′-methylenebis phosphonic dichloride (0.29 g, 1.1 mmol) in THF (3 mL) at 0° C. was added a solution of 1-[(3aR,4R,6R,6aR)-6-(hydroxymethyl)-2,2-dimethyl-3a,4,6,6a-tetrahydrofuro[3,4-d][1,3]dioxol-4-yl]-6-chloro-4-(cyclopentylamino)pyrrolo[2,3-b]pyridine-5-carbonitrile (0.17 g, 0.38 mmol) and 2,6-lutidine (0.13 mL, 1.1 mmol) in THF (3.0 mL) slowly. The reaction mixture was stirred at 0° C. for 2 hours. 1.0 M aqueous triethylammonium bicarbonate solution (1.5 mL) was added. The mixture was stirred at 0° C. for 30 minutes and ambient temperature for 1 hour. Saturated sodium bicarbonate solution (10 mL) and MTBE (30 mL) were added. The aqueous layer was separated, extracted with 3:1 DCM/IPA (50 mL), dried (sodium sulfate), filtered and concentrated under reduced pressure. The residue was dissolved in 80% formic acid (3 mL) in water and stirred at ambient temperature for 3 hours. Formic acid was removed under reduced pressure. Ammonium hydroxide (3 mL) and methanol (3 mL) were added. The mixture was stirred at ambient temperature for 30 minutes. Volatile material was removed under reduced pressure. 10 mL of saturated potassium hydrogen sulfate was added and the solution was extracted with 3:1 DCM/IPA, dried (sodium sulfate), filtered and concentrated under reduced pressure. The residue was purified by reverse phase HPLC CH3CN/water (10% to 95%, 0.1% TFA) to give [[(2R,3S,4R,5R)-5-[6-chloro-5-cyano-4-(cyclopentylamino)pyrrolo[2,3-b]pyridin-1-yl]-3,4-dihydroxy-tetrahydrofuran-2-yl]methoxy-hydroxy-phosphoryl]methylphosphonic acid (0.055 g, 22%) as a solid. LCMS ESI (+) m/z 551 (M+H).
Step A: Preparation of 6-amino-5-nitronicotinonitrile: To a solution of 4-bromo-2-nitro-aniline (40.0 g, 184.3 mmol), zinc cyanide (32.5 g, 276.5 mmol) and Pd(PPh3)4 (4.26 g, 3.7 mmol) in 1-methyl-2-pyrrolidone (50 mL) in a sealed tube was stirred at 100° C. for 6 hours. After cooling to ambient temperature, the mixture was diluted with ethyl acetate, filtered through celite and washed with ethyl acetate. The filtrate was washed with brine, dried (sodium sulfate), filtered and concentrated under reduced pressure. The residue obtained purified by flash chromatography on silica gel to give 4-amino-3-nitro-benzonitrile (16.1 g, 53%).
Step B: Preparation of 5,6-diaminonicotinonitrile: A suspension of 4-amino-3-nitro-benzonitrile (12.0 g, 73.6 mmol) and 10% Pt/C (1.2 g) in ethanol (30 mL) was charged with 1 atmosphere of hydrogen. The mixture was stirred under hydrogen for 18 hours at ambient temperature. The reaction mixture was filtered through a pad of celite and the filtrate was concentrated to give 3,4-diaminobenzonitrile (6.9 g, 70%).
Step C: Preparation of 3H-imidazo[4,5-b]pyridine-6-carbonitrile: To a solution of 5,6-diaminopyridine-3-carbonitrile (7.0 g, 52.2 mmol) in triethyl orthoformate (100 mL) was added formic acid (6.3 mL, 52.2 mmol) slowly at ambient temperature. After addition, the reaction mixture was stirred at 100° C. for 2 hours. After cooling to ambient temperature, the mixture was concentrated under reduced pressure. The residue was purified by recrystallization fromethyl acetate to give 3H-imidazo[4,5-b]pyridine-6-carbonitrile (6.9 g, 91%) as a solid. ESI (+) m/z 145 (M+H).
Step D: Preparation of 6-cyano-3H-imidazo[4,5-b]pyridine 4-oxide: To a suspension of 3H-imidazo[4,5-b]pyridine-6-carbonitrile (7.4 g, 51.3 mmol) in ethyl acetate (75 mL) was added 3-chloroperbenzoic acid (10.6 g, 61.6 mmol) at 0° C. After addition, the mixture was stirred at 35° C. for 24 hours. After cooling to ambient temperature, the solid was collected by filtration and dried to give 4-oxo-3H-imidazo[4,5-b]pyridine-6-carbonitrile (6.5 g, 79%) which was used directly in the next step. ESI (+) m/z 161 (M+H).
Step E: Preparation of 7-chloro-3H-imidazo[4,5-b]pyridine-6-carbonitrile and 5-chloro-3H-imidazo[4,5-b]pyridine-6-carbonitrile: To a suspension of 4-oxo-3H-imidazo[4,5-b]pyridine-6-carbonitrile (6.3 g, 39.3 mmol) in 1-methyl-2-pyrrolidone (60 mL) was added phosphorus (V) oxychloride (4.0 g, 91.3 mmol) dropwise at 0° C. The mixture was stirred at 0° C. for 1 hour. The mixture was poured into ice. Solid sodium bicarbonate was added to adjust pH to 8. The solid was collected by filtration and dried. The filtrate was extracted with ethyl acetate, washed with brine, dried (sodium sulfate), concentrated under reduced pressure and the residue was combined with the solid previously obtained gave a mixture of 7-chloro-3H-imidazo[4,5-b]pyridine-6-carbonitrile and 5-chloro-3H-imidazo[4,5-b]pyridine-6-carbonitrile (2.8 g, 20%) as a solid. ESI (−) m/z 177 (M−H).
Step F: Preparation of 7-chloro-6-cyano-3H-imidazo[4,5-b]pyridine 4-oxide and 5-chloro-6-cyano-3H-imidazo[4,5-b]pyridine 4-oxide: To a suspension of 5-chloro-3H-imidazo[4,5-b]pyridine-6-carbonitrile and 7-chloro-3H-imidazo[4,5-b]pyridine-6-carbonitrile (2.8 g, 7.8 mmol) mixture in ethyl acetate (50 mL) was added 3-chloroperbenzoic acid (2.98 g, 18.8 mmol) at 0° C. After addition, the mixture was stirred at 35° C. for 24 hours. After cooling to ambient temperature, the solid was collected by filtration and dried to give a mixture of 7-chloro-4-oxo-3H-imidazo[4,5-b]pyridine-6-carbonitrile and 5-chloro-4-oxo-3H-imidazo[4,5-b]pyridine-6-carbonitrile (2.7 g, 88%) as a solid. ESI (+) m/z 195 (M+H).
Step G: Preparation of 5,7-dichloro-3H-imidazo[4,5-b]pyridine-6-carbonitrile: To a suspension of 5-chloro-4-oxo-3H-imidazo[4,5-b]pyridine-6-carbonitrile and 7-chloro-4-oxo-3H-imidazo[4,5-b]pyridine-6-carbonitrile (2.7 g, 6.9 mmol) mixture in 1-methyl-2-pyrrolidone (40 mL) was added phosphorus (V) oxychloride (6.0 g, 39.7 mmol) dropwise at 0° C. The mixture was stirred at 0° C. for 1 hour. The mixture was poured into ice. Solid sodium bicarbonate was added to adjust pH to 8. The solid was collected by filtration and dried to give 5,7-dichloro-3H-imidazo[4,5-b]pyridine-6-carbonitrile (1.64 g, 55%) as a solid. ESI (−) m/z 211 (M−H).
Step H: Preparation of (2R,3R,4R,5R)-2-(acetoxymethyl)-5-(5,7-dichloro-6-cyano-3H-imidazo[4,5-b]pyridin-3-yHtetrahydrofuran-3,4-diyl diacetate: A mixture of [(2S,3S,4S,5R)-3,4,5-triacetoxytetrahydrofuran-2-yl]methyl acetate (2.87 g, 9.0 mmol), 5,7-dichloro-3H-imidazo[4,5-b]pyridine-6-carbonitrile (1.6 g, 7.5 mmol) and bis(4-nitrophenyl)phosphinic acid (0.051 g, 0.15 mmol) was stirred at 90° C. under reduced pressure for 7 hours. The residue obtained was purified by recrystallization from methanol to give [(2R,3R,4R,5R)-3,4-diacetoxy-5-(5,7-dichloro-6-cyano-imidazo[4,5-b]pyridin-3-yl)tetrahydrofuran-2-yl]methyl acetate (1.6 g, 45%) as a solid.
Step I: Preparation of 5-chloro-7-(cyclopentylamino)-3-((2R,3R,4S,5R)-3,4-dihydroxy-5-(hydroxymethyl)tetrahydrofuran-2-yl)-3H-imidazo[4,5-b]pyridine-6-carbonitrile: To a solution of [(2R,3R,4R,5R)-3,4-diacetoxy-5-(5,7-dichloro-6-cyano-imidazo[4,5-b]pyridin-3-yl)tetrahydrofuran-2-yl]methyl acetate (0.080 g, 0.17 mmol) in ethanol (5 mL) was added cyclopentanamine (0.015 g, 0.17 mmol) and triethyl amine (0.20 g, 2.0 mmol) in a sealed tube. The mixture was stirred at 50° C. for 16 hours. After cooling to ambient temperature, 7 N ammonia in methanol (5 mL) was added. The mixture was stirred at 50° C. overnight. After cooling to ambient temperature, solvent was removed under reduced pressure to give 5-chloro-7-(cyclopentylamino)-3-[(2R,3R,4S,5R)-3,4-dihydroxy-5-(hydroxymethyl)tetrahydrofuran-2-yl]imidazo[4,5-b]pyridine-6-carbonitrile (0.03 g, 45%) as a solid.
Step J: Preparation of 5-chloro-7-(cyclopentylamino)-34(3aR,4R,6R,6aR)-6-(hydroxymethyl)-2,2-dimethyltetrahydrofuro[3,4-d][1,3]dioxol-4-yl)-3H-imidazo[4,5-b]pyridine-6-carbonitrile. To a solution of 5,7-dichloro-3-[(2R,3R,4S,5R)-3,4-dihydroxy-5-(hydroxymethyl)tetrahydrofuran-2-yl]imidazo[4,5-b]pyridine-6-carbonitrile (0.050 g, 0.14 mmol) in acetone (10 mL) was added 2,2-dimethoxypropane (0.18 g, 1.7 mmol) and TsOH (0.036 g, 0.19 mmol) at ambient temperature. The mixture was stirred at ambient temperature for 3 hours, the mixture was dilute with ethyl acetate, washed with saturated sodium bicarbonate solution, dried (sodium sulfate), filtered, concentrated under reduced pressure. The residue obtained was purified by flash chromatography on silica gel 1:1 petroleum ether/ethyl acetate to give 3-[(3aR,4R,6R,6aR)-6-(hydroxymethyl)-2,2-dimethyl-3a,4,6,6a-tetrahydrofuro[3,4-d][1,3]dioxol-4-yl]-5-chloro-7-(cyclopentylamino)imidazo[4,5-b]pyridine-6-carbonitrile (0.020 g, 32%) as a solid.
Step K: Preparation of diethyl ((((3aR,4R,6R,6aR)-6-(5-chloro-6-cyano-7-(cyclopentylamino)-3H-imidazo[4,5-b]pyridin-3-yl)-2,2-dimethyltetrahydrofuro[3,4-d][1,3]dioxol-4-yl)methoxy)methyl)phosphonate: To a solution of 13-[(3aR,4R,6R,6aR)-6-(hydroxymethyl)-2,2-dimethyl-3a,4,6,6a-tetrahydrofuro[3,4-d][1,3]dioxol-4-yl]-5,7-dichloro-imidazo[4,5-b]pyridine-6-carbonitrile (20.0 mg, 0.05 mmol) and (diethoxyphosphoryl)methyl 4-methylbenzenesulfonate (33.5 mg, 0.10 mmol) in DMSO (4 mL) was added magnesium tert-butoxide (35.5 mg, 0.21 mmol). The mixture was stirred at 80° C. for 3 hours. After cooling to ambient temperature, saturated ammonium chloride solution (20 mL) and MTBE (30 mL) were added. The organic layer was separated, washed with brine, dried (sodium sulfate), filtered and concentrated under reduced pressure. The residue obtained was purified by PTLC 2:1 ethyl acetate/hexane to give diethyl ((((3aR,4R,6R,6aR)-6-(5-chloro-6-cyano-7-(cyclopentylamino)-3H-imidazo[4,5-b]pyridin-3-yl)-2,2-dimethyltetrahydrofuro[3,4-d][1,3]dioxol-4-yl)methoxy)methyl)phosphonate (15.0 mg, 49%) as a solid. ESI (+) m/z 584 (M+H).
Step L: Preparation of ((((2R,3S,4R,5R)-5-(5-chloro-6-cyano-7-(cyclopentylamino)-3H-imidazo[4,5-b]pyridin-3-yl)-3,4-dihydroxytetrahydrofuran-2-yl)methoxy)methyl)phosphonic acid: To a solution of diethyl ((((3aR,4R,6R,6aR)-6-(5-chloro-6-cyano-7-(cyclopentylamino)-3H-imidazo[4,5-b]pyridin-3-yl)-2,2-dimethyltetrahydrofuro[3,4-d][1,3]dioxol-4-yl)methoxy)methyl)phosphonate (20.5 mg, 0.04 mmol) and 2,6-lutidine (75.2 mg, 0.7 mmol) in dichloromethane (3 mL) was added bromotrimethyl silane (107.4 mg, 0.7 mmol) at ambient temperature. The mixture was stirred at ambient temperature overnight. The mixture was concentrated under reduced pressure. The residue was co-evaporated with acetonitrile twice, to give a solid. It was dissolved in 80% formic acid in water (3 mL) and stirred at ambient temperature for 2 hours. The mixture was concentrated under reduced pressure. The residue obtained was purified by preparative reverse phase HPLC (10% to 95%, CH3CN/water, 0.1% TFA) to give [(2R,3S,4R,5R)-5-[5-chloro-6-cyano-7-(cyclopentylamino)imidazo[4,5-b]pyridin-3-yl]-3,4-dihydroxy-tetrahydrofuran-2-yl]methoxymethylphosphonic acid (17.5 mg, 77%) as a solid. LCMS ESI (+) m/z 488 (M+H).
Step A: Preparation of 5-chloro-7-(3,3-difluoropyrrolidin-1-yl)-3-((2R,3R,4S,5R)-3,4-dihydroxy-5-(hydroxymethyl)tetrahydrofuran-2-yl)-3H-imidazo[4,5-b]pyridine-6-carbonitrile: To a solution of [(2R,3R,4R,5R)-3,4-diacetoxy-5-(5,7-dichloro-6-cyano-imidazo[4,5-b]pyridin-3-yl)tetrahydrofuran-2-yl]methyl acetate (100.0 mg, 0.21 mmol) in ethanol (15 mL) was added 3,3-difluoropyrrolidine hydrochloride (36.6 mg, 0.25 mmol) and triethylamine (21.5 mg, 0.21 mmol) at ambient temperature. The mixture was stirred at 50° C. for 16 hours. After cooling to ambient temperature, 7 N ammonia in methanol (3 mL) was added. The mixture was warmed to 50° C. and stirred at 50° C. overnight. After cooling to ambient temperature, solvent was removed under reduced pressure to give 5-chloro-7-(3,3-difluoropyrrolidin-1-yl)-3-((2R,3R,4S,5R)-3,4-dihydroxy-5-(hydroxymethyl)tetrahydrofuran-2-yl)-3H-imidazo[4,5-b]pyridine-6-carbonitrile which was used directly in the next step.
Step B: Preparation of 5-chloro-7-(3,3-difluoropyrrolidin-1-yl)-3-((3aR,4R,6R,6aR)-6-(hydroxymethyl)-2,2-dimethyltetrahydrofuro[3,4-d][1,3]dioxol-4-yl)-3H-imidazo[4,5-b]pyridine-6-carbonitrile: To a solution of 5-chloro-7-(3,3-difluoropyrrolidin-1-yl)-3-[(2R,3R,4S,5R)-3,4-dihydroxy-5-(hydroxymethyl)tetrahydrofuran-2-yl]imidazo[4,5-b]pyridine-6-carbonitrile in acetone (15 mL) was added 2,2-dimethoxypropane(325.6 mg, 3.13 mmol) and TsOH (53.8 mg, 0.31 mmol) at ambient temperature and stirred at ambient temperature for 30 minutes. Ethyl acetate (and saturated sodium bicarbonate solution were added. The organic layer was separated, dried (sodium sulfate), filtered and concentrated under reduced pressure. The residue obtained was purified by flash chromatography on silica gel 1:1 petroleum ether/ethyl acetate to give 5-chloro-7-(3,3-difluoropyrrolidin-1-yl)-3-((3aR,4R,6R,6aR)-6-(hydroxymethyl)-2,2-dimethyltetrahydrofuro[3,4-d][1,3]dioxol-4-yl)-3H-imidazo[4,5-b]pyridine-6-carbonitrile (60 mg, 54%) as a solid.
Step C: Preparation of diethyl ((((3aR,4R,6R,6aR)-6-(5-chloro-6-cyano-7-(3,3-difluoropyrrolidin-1-yl)-3H-imidazo[4,5-b]pyridin-3-yl)-2,2-dimethyltetrahydrofuro[3,4-d][1,3]dioxol-4-yl)methoxy)methyl)phosphonate: To a solution of 3-[(3aR,4R,6R,6aR)-6-(hydroxymethyl)-2,2-dimethyl-3a,4,6,6a-tetrahydrofuro[3,4-d][1,3]dioxol-4-yl]-5-chloro-7-(3,3-difluoropyrrolidin-1-yl)imidazo[4,5-b]pyridine-6-carbonitrile (60.0 mg, 0.13 mmol) in dry DMSO (5 mL) was added magnesium tert-butoxide (134.7 mg, 0.79 mmol) and (diethoxyphosphoryl)methyl 4-methylbenzenesulfonate (127.3 mg, 0.39 mmol) at ambient temperature. The mixture was stirred at 80° C. for 3 hours. After cooling to ambient temperature, the reaction mixture was poured into saturated ammonium chloride solution and extracted with ethyl acetate. The organic layer was separated, dried (sodium sulfate), filtered and concentrated under reduced pressure. The residue obtained was purified by PTLC (60% ethyl acetate in hexane) to give diethyl ((((3aR,4R,6R,6aR)-6-(5-chloro-6-cyano-7-(3,3-difluoropyrrolidin-1-yl)-3H-imidazo[4,5-b]pyridin-3-yl)-2,2-dimethyltetrahydrofuro[3,4-d][1,3]dioxol-4-yl)methoxy)methyl)phosphonate (65 mg, 81%) as a solid.
Step D: Preparation of ((((2R,3S,4R,5R)-5-(5-chloro-6-cyano-7-(3,3-difluoropyrrolidin-1-yl)-3H-imidazo[4,5-b]pyridin-3-yl)-3,4-dihydroxytetrahydrofuran-2-yl)methoxy)methyl)phosphonic acid: To a solution of diethyl ((((3aR,4R,6R,6aR)-6-(5-chloro-6-cyano-7-(3,3-difluoropyrrolidin-1-yl)-3H-imidazo[4,5-b]pyridin-3-yl)-2,2-dimethyltetrahydrofuro[3,4-d][1,3]dioxol-4-yl)methoxy)methyl)phosphonate (65.0 mg, 0.11 mmol) and 2,6-lutidine (114.9 mg, 1.07 mmol) in DCM (5 mL) was added bromotrimethylsilane (164.2 mg, 1.07 mmol) at ambient temperature. The mixture was stirred at ambient temperature overnight. The mixture was concentrated at reduced pressure. The residue was co-evaporated with acetonitrile twice to give a solid, which was dissolved in 80% aqueous HCOOH solution (3 mL) and stirred at ambient temperature for 2 hours. The mixture was concentrated under reduced pressure and purified by reverse phase HPLC (0.05% TFA, 20% to 80% MeCN/H2O over 15 min) to give [(2R,3S,4R,5R)-5-[5-chloro-6-cyano-7-(3,3-difluoropyrrolidin-1-yl)imidazo[4,5-b]pyridin-3-yl]-3,4-dihydroxy-tetrahydrofuran-2-yl]methoxymethylphosphonic acid (34.8 mg, 47%) as a solid. LCMS ESI (−) m/z 508 (M−H).
Step A: Preparation of 5-chloro-7-((3S,4R)-3,4-difluoropyrrolidin-1-yl)-3-((2R,3R,4S,5R)-3,4-dihydroxy-5-(hydroxymethyl)tetrahydrofuran-2-yl)-3H-imidazo[4,5-b]pyridine-6-carbonitrile: To a solution of [(2R,3R,4R,5R)-3,4-diacetoxy-5-(5,7-dichloro-6-cyano-imidazo[4,5-b]pyridin-3-yl)tetrahydrofuran-2-yl]methyl acetate (100.0 mg, 0.21 mmol) in ethanol (5 mL) was added (3R,4S)-3,4-difluoropyrrolidine hydrochloride (36.5 mg, 0.25 mmol) and triethylamine (64.4 mg, 0.64 mmol) in sealed tube at ambient temperature. The mixture was stirred at 50° C. for 16 hours. After cooling to ambient temperature, 7 N ammonia in methanol (3 mL) was added. The mixture was stirred at 50° C. for additional 16 hours. Solvent was removed under reduced pressure to give 5-chloro-7-((3S,4R)-3,4-difluoropyrrolidin-1-yl)-3-((2R,3R,4S,5R)-3,4-dihydroxy-5-(hydroxymethyl)tetrahydrofuran-2-yl)-3H-imidazo[4,5-b]pyridine-6-carbonitrile, which was used directly in the next step without purification.
Step B: Preparation of 5-chloro-7-((3S,4R)-3,4-difluoropyrrolidin-1-yl)-3-((3aR,4R,6R,6aR)-6-(hydroxymethyl)-2,2-dimethyltetrahydrofuro[3,4-d][1,3]dioxol-4-yl)-3H-imidazo[4,5-b]pyridine-6-carbonitrile: To a solution of 5-chloro-7-((3S,4R)-3,4-difluoropyrrolidin-1-yl)-3-((2R,3R,4S,5R)-3,4-dihydroxy-5-(hydroxymethyl)tetrahydrofuran-2-yl)-3H-imidazo[4,5-b]pyridine-6-carbonitrile (100.0 mg, 0.25 mmol) in acetone (10 mL) was added 2,2-dimethoxy propane (337.0 mg, 3.24 mmol) and TsOH (110.9 mg, 1.067 mmol) at ambient temperature. The mixture was stirred at ambient temperature for 30 minutes, the mixture was diluted with ethyl acetate, washed with saturated sodium bicarbonate solution. The organic layer was dried (sodium sulfate), filtered, and concentrated under reduced pressure. The residue obtained was purified by flash chromatography on silica gel 1:1 petroleum ether/ethyl acetate to give 5-chloro-7-((3S,4R)-3,4-difluoropyrrolidin-1-yl)-3-((3aR,4R,6R,6aR)-6-(hydroxymethyl)-2,2-dimethyltetrahydrofuro[3,4-d][1,3]dioxol-4-yl)-3H-imidazo[4,5-b]pyridine-6-carbonitrile (50 mg, 45%) as a solid.
Step C: Preparation of diethyl ((((3aR,4R,6R,6aR)-6-(5-chloro-6-cyano-7-((3S,4R)-3,4-difluoropyrrolidin-1-yl)-3H-imidazo[4,5-b]pyridin-3-yl)-2,2-dimethyltetrahydrofuro[3,4-d][1,3]dioxol-4-yl)methoxy)methyl)phosphonate: To a solution of 3-[(3aR,4R,6R,6aR)-6-(hydroxymethyl)-2,2-dimethyl-3a,4,6,6a-tetrahydrofuro[3,4-d][1,3]dioxol-4-yl]-5-chloro-7-[(3R,4S)-3,4-difluoropyrrolidin-1-yl]imidazo[4,5-b]pyridine-6-carbonitrile (50.0 mg, 0.11 mmol) in dry DMSO (6 mL) was added magnesium tert-butoxide (112.2 mg, 0.66 mmol) and (diethoxyphosphoryl)methyl 4-methylbenzenesulfonate (106.1 mg, 0.33 mmol). The mixture was stirred at 80° C. for 3 hours. After cooling to ambient temperature, the reaction mixture was poured into saturated ammonium chloride solution and extracted with ethyl acetate. The organic layer was separated, dried (sodium sulfate), filtered and concentrated under reduced pressure. The residue obtained was purified by PTLC (60% ethyl acetate in hexane) to give diethyl ((((3aR,4R,6R,6aR)-6-(5-chloro-6-cyano-7-((3S,4R)-3,4-difluoropyrrolidin-1-yl)-3H-imidazo[4,5-b]pyridin-3-yl)-2,2-dimethyltetrahydrofuro[3,4-d][1,3]dioxol-4-yl)methoxy)methyl)phosphonate (32 mg, 48%) as a solid.
Step D: Preparation of ((((2R,3S,4R,5R)-5-(5-chloro-6-cyano-7-((3S,4R)-3,4-difluoropyrrolidin-1-yl)-3H-imidazo[4,5-b]pyridin-3-yl)-3,4-dihydroxytetrahydrofuran-2-yl)methoxy)methyl)phosphonic acid: To a solution of diethyl ((((3aR,4R,6R,6aR)-6-(5-chloro-6-cyano-7-((3S,4R)-3,4-difluoropyrrolidin-1-yl)-3H-imidazo[4,5-b]pyridin-3-yl)-2,2-dimethyltetrahydrofuro[3,4-d][1,3]dioxol-4-yl)methoxy)methyl)phosphonate (32.0 mg, 0.05 mmol) and 2,6-lutidine (56.6 mg, 0.53 mmol) in DCM (5 mL) was added bromotrimethylsilane (80.8 mg, 0.53 mmol) at ambient temperature. The mixture was stirred at ambient temperature overnight. The mixture was concentrated at reduced pressure. The residue was co-evaporated with acetonitrile twice to give a solid, which was dissolved in 80% aqueous HCOOH (3 mL) and stirred at ambient temperature for 2 hours. The mixture was concentrated under reduced pressure. The residue was purified by reverse phase HPLC (0.05% TFA, 20% to 80% MeCN/H2O over 15 min) to give [(2R,3S,4R,5R)-5-[5-chloro-6-cyano-7-[(3R,4S)-3,4-difluoropyrrolidin-1-yl]imidazo[4,5-b]pyridin-3-yl]-3,4-dihydroxy-tetrahydrofuran-2-yl]methoxymethylphosphonic acid (4.7 mg, 14%) as a solid. LCMS ESI (−) m/z 508 (M−H).
Step A: Preparation of 1H-pyrazolo[3,4-b]pyridine-5-carbonitrile: A suspension of zinc cyanide (6.11 g, 52.0 mmol), tetrakis(triphenylphosphine)palladium(O) (3.01 g, 2.6 mmol) and 5-bromo-1H-Pyrazolo[3,4-b]pyridine (10.3 g, 52.0 mmol) in NMP (50 mL) was stirred at 92° C. (bath) for 5 hours. After cooling to ambient temperature, ethyl acetate (100 mL) was added. Solid was removed by filtration. The filtrate was concentrated under reduced pressure. Water (200 mL) was added to resulting solution and stirred at ambient temperature for 10 minutes. The solids were collected by filtration then suspended in acetic acid (25 mL) and water (50 mL). The mixture was stirred at ambient temperature for 30 minutes. The solids were collected by filtration, washed with water and dried to give 1H-pyrazolo[3,4-b]pyridine-5-carbonitrile (6.77 g, 90%) as a solid. LCMS ESI (+) m/z 145 (M+H).
Step B: Preparation of 5-cyano-1H-pyrazolo[3,4-b]pyridine 7-oxide: A suspension of 1H-pyrazolo[3,4-b]pyridine-5-carbonitrile (6.77 g, 47.0 mmol) in ethyl acetate (20 mL) was added 3-chloroperbenzoic acid (15.8 g, 70.5 mmol) at ambient temperature. After addition, the reaction mixture was stirred at 42° C. (bath) for 24 hours. After cooling to ambient temperature, hexane (20 mL) was added and the mixture was stirred at ambient temperature for 10 minutes. The solids were collected by filtration then washed with hexane and dried to give 7-oxo-1H-pyrazolo[3,4-b]pyridine-5-carbonitrile (6.95 g, 92%) as a solid. LCMS ESI (+) m/z 161 (M+H).
Step C: Preparation of 4-chloro-1H-pyrazolo[3,4-b]pyridine-5-carbonitrile: A mixture of 7-oxo-1H-pyrazolo[3,4-b]pyridine-5-carbonitrile (12.0 g, 74.9 mmol) in phosphorus (V) oxychloride (100.0 mL, 1072.9 mmol) was stirred at 50° C. for 1 hour. The mixture was concentrated under reduced pressure and then ice-water was added. The mixture was neutralized with solid sodium bicarbonate to pH 8 and extracted with DCM twice. The combined organics were washed with brine, dried (sodium sulfate), filtered and concentrated under reduced pressure. The residue obtained was purified by flash chromatography on silica gel 8:1 DCM/ethyl acetate to give 4-chloro-1H-pyrazolo[3,4-b]pyridine-5-carbonitrile (1.5 g, 11%) as a solid. LCMS ESI (−) m/z 177 (M−H).
Step D: Preparation of 4-chloro-5-cyano-1H-pyrazolo[3,4-b]pyridine 7-oxide: To a suspension of 4-chloro-1H-pyrazolo[3,4-b]pyridine-5-carbonitrile (1.5 g, 8.4 mmol) in ethyl acetate (30 mL) was added 3-chloroperbenzoic acid (4.0 g, 17.4 mmol) at 0° C. After addition, the mixture was stirred at 40° C. overnight. After cooling to ambient temperature, the solid was collected by filtration and dried to give 4-chloro-5-cyano-1H-pyrazolo[3,4-b]pyridine 7-oxide (1.3 g, 79%) as a solid. LCMS ESI (+) m/z 195 (M+H).
Step E: Preparation of 4,6-dichloro-1H-pyrazolo[3,4-b]pyridine-5-carbonitrile: To a suspension of 4-chloro-7-oxo-1H-pyrazolo[3,4-b]pyridine-5-carbonitrile (1.3 g, 6.7 mmol) in 1-methyl-2-pyrrolidone (10 mL) was added phosphorus (V) oxychloride (2.0 g, 13.0 mmol) dropwise at 0° C. After addition, the mixture was stirred at ambient temperature for 2 hours. The mixture was poured into ice. Solid sodium bicarbonate was added to adjust pH to 8 and extracted with ethyl acetate, washed with brine, dried (sodium sulfate), filtered and concentrated under reduced pressure. The residue obtained was recrystallized from DCM and hexane to give 4,6-dichloro-1H-pyrazolo[3,4-b]pyridine-5-carbonitrile (1.1 g, 77%) as a solid. LCMS ESI (−) m/z 211 (M−H).
Step F: Preparation of 6-chloro-4-(cyclopentylamino)-1H-pyrazolo[3,4-b]pyridine-5-carbonitrile: A mixture of 4,6-dichloro-1H-pyrazolo[3,4-b]pyridine-5-carbonitrile (100.0 mg, 0.47 mmol), cyclopentanamine (80.0 mg, 0.94 mmol) and triethyl amine (142.5 mg, 1.41 mmol) in ethanol (5 mL) was stirred at ambient temperature for 16 hours. The reaction was concentrated under reduced pressure. Water (20 mL) was added and the mixture was stirred at ambient temperature for 10 minutes. The solids were collected by filtration and dried to give 6-chloro-4-(cyclopentylamino)-1H-pyrazolo[3,4-b]pyridine-5-carbonitrile (85 mg, 69%) as a solid. ESI (+) m/z 262 (M+H).
Step G: Preparation of 6-chloro-4-(cyclopentylamino)-1-((3aR,4R,6R,6aR)-6-(hydroxymethyl)-2,2-dimethyltetrahydrofuro[3,4-d][1,3]dioxol-4-yl)-1H-pyrazolo[3,4-b]pyridine-5-carbonitrile: To a mixture of 6-chloro-4-(cyclopentylamino)-1H-pyrazolo[3,4-b]pyridine-5-carbonitrile (85.0 mg, 0.32 mmol) in acetonitrile (5 mL) was added sodium hydride, 60% dispersion in mineral oil (26.0 mg, 0.65 mmol) at 0° C. After addition, the mixture was stirred at ambient temperature for 1 hour. Then [(3aR,4R,6R,6aR)-4-chloro-2,2-dimethyl-3a,4,6,6a-tetrahydrofuro[3,4-d][1,3]dioxol-6-yl]methoxy-tert-butyl-dimethyl-silane (314.6 mg, 0.97 mmol) in acetonitrile (5 mL) was added. The mixture was stirred at ambient temperature for 16 hours. The reaction was quenched with saturated ammonium chloride solution and extracted with ethyl acetate (50 mL). The organics was washed brine, dried (sodium sulfate), filtered and concentrated under reduced pressure. The residue obtained was dissolved in THF (2 mL) and 1.0 M TBAF in THF (1.0 mL, 1.0 mmol) was added at ambient temperature and stirred at ambient temperature for 1 hour. Saturated sodium bicarbonate solution (15 mL) and ethyl acetate (20 mL) were added. The organic layer was separated, dried (sodium sulfate), filtered and concentrated under reduced pressure. The residue obtained was purified by PTLC 1:1 petroleum ether/ethyl acetate to give 1-[(3aR,4R,6R,6aR)-6-(hydroxymethyl)-2,2-dimethyl-3a,4,6,6a-tetrahydrofuro[3,4-d][1,3]dioxol-4-yl]-6-chloro-4-(cyclopentylamino)pyrazolo[3,4-b]pyridine-5-carbonitrile (30 mg, 21%) as a solid.
Step H: Preparation of diethyl ((((3aR,4R,6R,6aR)-6-(6-chloro-5-cyano-4-(cyclopentylamino)-1H-pyrazolo[3,4-b]pyridin-1-yl)-2,2-dimethyltetrahydrofuro[3,4-d][1,3]dioxol-4-yl)methoxy)methyl)phosphonate: A mixture of 1-[(3aR,4R,6R,6aR)-6-(hydroxymethyl)-2,2-dimethyl-3a,4,6,6a-tetrahydrofuro[3,4-d][1,3]dioxol-4-yl]-6-chloro-4-(cyclopentylamino)pyrazolo[3,4-b]pyridine-5-carbonitrile (30.0 mg, 0.07 mmol), (diethoxyphosphoryl)methyl 4-methylbenzenesulfonate (66.9 mg, 0.21 mmol) and magnesium tert-butoxide (70.7 mg, 0.41 mmol) in DMSO (5 mL) was stirred for 3 hours at 80° C. After cooling to ambient temperature, the reaction was quenched by water and extracted with ethyl acetate (20 mL). The organics was brine, dried (sodium sulfate), filtered and concentrated under reduced pressure. The residue obtained was purified by PTLC 1:2 petroleum ether/ethyl acetate to give diethyl ((((3aR,4R,6R,6aR)-6-(6-chloro-5-cyano-4-(cyclopentylamino)-1H-pyrazolo[3,4-b]pyridin-1-yl)-2,2-dimethyltetrahydrofuro[3,4-d][1,3]dioxol-4-yl)methoxy)methyl)phosphonate (25 mg, 62%) as a solid.
Step I: Preparation of ((((2R,3S,4R,5R)-5-(6-chloro-5-cyano-4-(cyclopentylamino)-1H-pyrazolo[3,4-b]pyridin-1-yl)-3,4-dihydroxytetrahydrofuran-2-yl)methoxy)methyl)phosphonic acid: To a solution of diethyl ((((3aR,4R,6R,6aR)-6-(6-chloro-5-cyano-4-(cyclopentylamino)-1H-pyrazolo[3,4-b]pyridin-1-yl)-2,2-dimethyltetrahydrofuro[3,4-d][1,3]dioxol-4-yl)methoxy)methyl)phosphonate (25.0 mg, 0.04 mmol) in DCM (2 mL) was added 2,6-lutidine (64.2 mg, 0.6 mmol) and bromotrimethylsilane (98.3 mg, 0.64 mmol) at ambient temperature. The reaction mixture was stirred at ambient temperature for 16 hours. Solvent was removed under reduced pressure. The residue obtained was dissolved in 80% aqueous formic acid solution (2.0 mL) and stirred at ambient temperature for 2 hours. The reaction was concentrated to dryness and the residue was then purified by preparative reverse phase HPLC (10% to 95%, CH3CN/water, 0.1% TFA) to give [(2R,3S,4R,5R)-5-[6-chloro-5-cyano-4-(cyclopentylamino)pyrazolo[3,4-b]pyridin-1-yl]-3,4-dihydroxy-tetrahydrofuran-2-yl]methoxymethylphosphonic acid (5.8 mg, 22%) as a solid. LCMS ESI (−) m/z 486 (M−H).
Step A: Preparation of 6-chloro-4-(3,3-difluoropyrrolidin-1-yl)-1H-pyrazolo[3,4-b]pyridine-5-carbonitrile: To a solution of 4,6-dichloro-1H-pyrazolo[3,4-b]pyridine-5-carbonitrile (100 mg, 0.47 mmol) in ethanol (5 mL) was added 3,3-difluoro pyrrolidine hydrochloride (80.0 mg, 0.56 mmol) and triethylamine (100.0 mg, 0.99 mmol). The mixture was stirred at ambient temperature overnight. The mixture was concentrated under reduced pressure and diluted with water. Solid formed was collected by filtration and dried to give 6-chloro-4-(3,3-difluoropyrrolidin-1-yl)-1H-pyrazolo[3,4-b]pyridine-5-carbonitrile (100 mg, 75%) as a solid. LCMS ESI (−) m/z 282 (M−H).
Step B: Preparation of 1-[(3aR,4R,6R,6aR)-6-(hydroxymethyl)-2,2-dimethyl-3a,4,6,6a-tetrahydrofuro[3,4-d][1,3]dioxol-4-yl]-6-chloro-4-(3,3-difluoropyrrolidin-1-yl)pyrazolo[3,4-b]pyridine-5-carbonitrile: To a solution of 6-chloro-4-(3,3-difluoropyrrolidin-1-yl)-1H-pyrazolo[3,4-b]pyridine-5-carbonitrile (100 mg, 0.35 mmol) in acetonitrile (5 mL) was added sodium hydride, 60% dispersion in mineral oil (40 mg, 1 mmol) at 0° C. The mixture was stirred at ambient temperature for 0.5 h, then [(3aR,4R,6R,6aR)-4-chloro-2,2-dimethyl-3a,4,6,6a-tetrahydrofuro[3,4-d][1,3]dioxol-6-yl]methoxy-tert-butyl-dimethyl-silane (340.0 mg, 1.05 mmol) was added, and the mixture was stirred at ambient temperature overnight. The mixture was poured into saturated ammonium chloride solution, extracted with MTBE, washed with brine, dried (sodium sulfate), filtered and concentrated under reduced pressure. The residue obtained was dissolved in THF (5 mL), and 1.0 M tetrabutylammonium fluoride (2.0 mL, 2.0 mmol) was added. The resulting mixture was stirred at ambient temperature for 1 hour. The mixture was poured into saturated ammonium chloride, extracted with ethyl acetate, washed with brine, dried (sodium sulfate), filtered and concentrated under reduced pressure. The residue obtained was purified by flash chromatography on silica gel 1:1 hexane/ethyl acetate to give 1-[(3aR,4R,6R,6aR)-6-(hydroxymethyl)-2,2-dimethyl-3a,4,6,6a-tetrahydrofuro[3,4-d][1,3]dioxol-4-yl]-6-chloro-4-(3,3-difluoropyrrolidin-1-yl)pyrazolo[3,4-b]pyridine-5-carbonitrile (55.0 mg, 34%) as a solid.
Step C: Preparation of diethyl ((((3aR,4R,6R,6aR)-6-(6-chloro-5-cyano-4-(3,3-difluoropyrrolidin-1-yl)-1H-pyrazolo[3,4-b]pyridin-1-yl)-2,2-dimethyltetrahydrofuro[3,4-d][1,3]dioxol-4-yl)methoxy)methyl)phosphonate: To a solution of 1-[(3aR,4R,6R,6aR)-6-(hydroxymethyl)-2,2-dimethyl-3a,4,6,6a-tetrahydrofuro[3,4-d][1,3]dioxol-4-yl]-6-chloro-4-(3,3-difluoropyrrolidin-1-yl)pyrazolo[3,4-b]pyridine-5-carbonitrile (25.0 mg, 0.05 mmol) and diethoxyphosphorylmethyl 4-methylbenzenesulfonate (50.0 mg, 0.16 mmol) in DMSO (3 mL) was added magnesium tert-butoxide (50.0 mg, 0.29 mmol). The mixture was stirred at 80° C. for 3 hours. After cooling to ambient temperature, the mixture was added to saturated ammonium chloride solution, extracted with ethyl acetate, dried (sodium sulfate), filtered and concentrated under reduced pressure. The residue obtained was purified by PTLC 2:1 ethyl acetate/hexane to give diethyl ((((3aR,4R,6R,6aR)-6-(6-chloro-5-cyano-4-(3,3-difluoropyrrolidin-1-yl)-1H-pyrazolo[3,4-b]pyridin-1-yl)-2,2-dimethyltetrahydrofuro[3,4-d][1,3]dioxol-4-yl)methoxy)methyl)phosphonate (22 mg, 66%) as an oil.
Step D: Preparation of [(2R,3S,4R,5R)-5-[6-chloro-5-cyano-4-(3,3-difluoropyrrolidin-1-yl)pyrazolo[3,4-b]pyridin-1-yl]-3,4-dihydroxy-tetrahydrofuran-2-yl]methoxymethylphosphonic acid: To a mixture of diethyl ((((3aR,4R,6R,6aR)-6-(6-chloro-5-cyano-4-(3,3-difluoropyrrolidin-1-yl)-1H-pyrazolo[3,4-b]pyridin-1-yl)-2,2-dimethyltetrahydrofuro[3,4-d][1,3]dioxol-4-yl)methoxy)methyl)phosphonate (22.0 mg, 0.04 mmol) in DCM (3 mL) were added 2,6-lutidine (80 mg, 0.75 mmol) and bromotrimethyl silane (120 mg, 0.78 mmol). The reaction mixture was stirred at ambient temperature overnight. The reaction mixture was concentrated under reduced pressure. The residue was co-evaporated with MeCN twice to give the crude product, which was dissolved in 80% HCOOH aqueous solution (3 mL) and stirred at ambient temperature for 2 hours. The mixture was concentrated under reduced pressure and purified by reverse phase HPLC (0.05% TFA, 20% to 75% MeCN/H2O over 15 min) to afford [(2R,3S,4R,5R)-5-[6-chloro-5-cyano-4-(3,3-difluoropyrrolidin-1-yl)pyrazolo[3,4-b]pyridin-1-yl]-3,4-dihydroxy-tetrahydrofuran-2-yl]methoxymethylphosphonic acid (13 mg, 70%) as a solid. LCMS ESI (−) m/z 508 (M−H).
Step A: Preparation of 6-chloro-4-[(3R,4S)-3,4-difluoropyrrolidin-1-yl]-1H-pyrazolo[3,4-b]pyridine-5-carbonitrile: A mixture of 4,6-dichloro-1H-pyrazolo[3,4-b]pyridine-5-carbonitrile (100 mg, 0.47 mmol), (3S,4R)-3,4-difluoropyrrolidine hydrochloride (74.1 mg, 0.52 mmol) and triethyl amine (142.5 mg, 1.41 mmol) in ethanol (5 mL) was stirred at ambient temperature for 16 hours. The reaction was concentrated to dryness and water (20 mL) was added. The solids were collected by filtration to give 6-chloro-4-[(3R,4S)-3,4-difluoropyrrolidin-1-yl]-1H-pyrazolo[3,4-b]pyridine-5-carbonitrile (105 mg, 78%) as a solid.
Step B: Preparation of 6-chloro-4-((3S,4R)-3,4-difluoropyrrolidin-1-yl)-1-((3aR,4R,6R,6aR)-6-(hydroxymethyl)-2,2-dimethyltetrahydrofuro[3,4-d][1,3]dioxol-4-yl)-1H-pyrazolo[3,4-b]pyridine-5-carbonitrile: To a mixture of 6-chloro-4-[(3R,4S)-3,4-difluoropyrrolidin-1-yl]-1H-pyrazolo[3,4-b]pyridine-5-carbonitrile (105.0 mg, 0.37 mmol) in acetonitrile (5 mL) was added sodium hydride, 60% dispersion in mineral oil (29.6 mg, 0.74 mmol) at 0° C. After addition, the mixture was warmed to and stirred at ambient temperature for 1 hour. [(3aR,4R,6R,6aR)-4-chloro-2,2-dimethyl-3a,4,6,6a-tetrahydrofuro[3,4-d][1,3]dioxol-6-yl]methoxy-tert-butyl-dimethyl-silane (358.6 mg, 1.11 mmol) was added. The mixture was stirred at ambient temperature for 16 hours. The reaction was quenched with saturated ammonium chloride solution. The mixture was extracted with ethyl acetate (50 mL). The organic layer was separated, washed with brine, dried (sodium sulfate), filtered and concentrated under reduced pressure to give an oil. It was dissolved in THF (2 mL) and tetrabutyl ammonium fluoride, 1.0 M in THF (1.0 mL, 0.33 mmol) was added and stirred at ambient temperature for 1 hour. Saturated sodium bicarbonate solution (15 mL) and ethyl acetate (20 mL) were added. The organic layer was separated, dried (sodium sulfate), filtered and concentrated under reduced pressure. The residue obtained was purified by PTLC (petroleum ether:ethyl acetate=1:1) to give 1-[(3aR,4R,6R,6aR)-6-(hydroxymethyl)-2,2-dimethyl-3a,4,6,6a-tetrahydrofuro[3,4-d][1,3]dioxol-4-yl]-6-chloro-4-[(3R,4S)-3,4-difluoropyrrolidin-1-yl]pyrazolo[3,4-b]pyridine-5-carbonitrile (40 mg, 23%) as a solid.
Step C: Preparation of diethyl ((((3aR,4R,6R,6aR)-6-(6-chloro-5-cyano-4-((3S,4R)-3,4-difluoropyrrolidin-1-yl)-1H-pyrazolo[3,4-b]pyridin-1-yl)-2,2-dimethyltetrahydrofuro[3,4-d][1,3]dioxol-4-yl)methoxy)methyl)phosphonate: A mixture of 1-[(3aR,4R,6R,6aR)-6-(hydroxymethyl)-2,2-dimethyl-3a,4,6,6a-tetrahydrofuro[3,4-d][1,3]dioxol-4-yl]-6-chloro-4-[(3R,4S)-3,4-difluoropyrrolidin-1-yl]pyrazolo[3,4-b]pyridine-5-carbonitrile (40.0 mg, 0.09 mmol), (diethoxyphosphoryl)methyl 4-methylbenzenesulfonate (84.9 mg, 0.26 mmol) and magnesium tert-butoxide (89.8 mg, 0.53 mmol) in DMSO (5 mL) was stirred for 3 h at 80° C. After cooling to ambient temperature, the reaction was quenched with water and the residue was extracted with ethyl acetate (10 mL). The organic layer was separated, washed with brine, dried (sodium sulfate), filtered and concentrated under reduced pressure. The crude was then purified by PTLC to give diethyl ((((3aR,4R,6R,6aR)-6-(6-chloro-5-cyano-4-((3S,4R)-3,4-difluoropyrrolidin-1-yl)-1H-pyrazolo[3,4-b]pyridin-1-yl)-2,2-dimethyltetrahydrofuro[3,4-d][1,3]dioxol-4-yl)methoxy)methyl)phosphonate (30 mg, 56%) as a solid.
Step D: Preparation of ((((2R,3S,4R,5R)-5-(6-chloro-5-cyano-4-((3S,4R)-3,4-difluoropyrrolidin-1-yl)-1H-pyrazolo[3,4-b]pyridin-1-yl)-3,4-dihydroxytetrahydrofuran-2-yl)methoxy)methyl)phosphonic acid: A mixture of diethyl ((((3 aR,4R,6R,6aR)-6-(6-chloro-5-cyano-4-((3S,4R)-3,4-difluoropyrrolidin-1-yl)-1H-pyrazolo[3,4-b]pyridin-1-yl)-2,2-dimethyltetrahydrofuro[3,4-d][1,3]dioxol-4-yl)methoxy)methyl)phosphonate (30.0 mg, 0.05 mmol), 2,6-lutidine (74.3 mg, 0.69 mmol) and bromotrimethylsilane (113.7 mg, 0.74 mmol) in DCM (2 mL) was stirred at ambient temperature for 16 hours. The reaction was concentrated under reduced pressure to dryness and it was dissolved in 80% aqueous HCOOH (2.0 mL) and stirred at ambient temperature for 2 hours. Solvent was removed under reduced pressure and the residue obtained was purified by preparative reverse phase HPLC (0.05% TFA, 10% to 75% MeCN/H2O over 15 min) to give [(2R,3S,4R,5R)-5-[6-chloro-5-cyano-4-[(3R,4S)-3,4-difluoropyrrolidin-1-yl]pyrazolo[3,4-b]pyridin-1-yl]-3,4-dihydroxy-tetrahydrofuran-2-yl]methoxymethylphosphonic acid (3.3 mg, 11%) as a solid. LCMS ESI (−) m/z 508 (M−H).
Step A: Preparation of [(2R,3R,4S,5R)-3-benzoyloxy-5-[6-chloro-5-cyano-4-(3,3-difluoropyrrolidin-1-yl)pyrazolo[3,4-b]pyridin-1-yl]-4-fluoro-tetrahydrofuran-2-yl]methyl benzoate: To a solution of 6-chloro-4-(3,3-difluoropyrrolidin-1-yl)-1H-pyrazolo[3,4-b]pyridine-5-carbonitrile (300.0 mg, 1.06 mmol) in acetonitrile (10 mL) was added cesium carbonate (700.0 mg, 2.15 mmol) at ambient temperature. The mixture was stirred at ambient temperature for 1 hour. [(2R,3R,4S,5R)-3-benzoyloxy-5-bromo-4-fluoro-tetrahydrofuran-2-yl]methyl benzoate (760.0 mg, 1.8 mmol) in MeCN (5 mL) was added to the mixture dropwise. The resulting mixture was stirred at ambient temperature overnight. The mixture was filtered on a pad of silica gel, washed with ethyl acetate and concentrated under reduced pressure. The residue was purified by flash chromatography on silica gel 5:1 hexane/ethyl acetate to give [(2R,3R,4S,5R)-3-benzoyloxy-5-[6-chloro-5-cyano-4-(3,3-difluoropyrrolidin-1-yl)pyrazolo[3,4-b]pyridin-1-yl]-4-fluoro-tetrahydrofuran-2-yl]methyl benzoate (290 mg, 43%) as a solid.
Step B: Preparation of 6-chloro-4-(3,3-difluoropyrrolidin-1-yl)-1-[(2R,3S,4R,5R)-3-fluoro-4-hydroxy-5-(hydroxymethyl)tetrahydrofuran-2-yl]pyrazolo[3,4-b]pyridine-5-carbonitrile: A solution of [(2R,3R,4S,5R)-3-benzoyloxy-5-[6-chloro-5-cyano-4-(3,3-difluoropyrrolidin-1-yl)pyrazolo[3,4-b]pyridin-1-yl]-4-fluoro-tetrahydrofuran-2-yl]methyl benzoate (290.0 mg, 0.46 mmol) in methanol (5 mL) was added potassium carbonate (80.0 mg, 0.58 mmol) at ambient temperature. The mixture was stirred at ambient temperature for 3 hours. The mixture was concentrated and purified by flash chromatography on silica gel 20:1 DCM/MeOH to give 6-chloro-4-(3,3-difluoropyrrolidin-1-yl)-1-[(2R,3S,4R,5R)-3-fluoro-4-hydroxy-5-(hydroxymethyl)tetrahydrofuran-2-yl]pyrazolo[3,4-b]pyridine-5-carbonitrile (170 mg, 87%) as a solid.
Step C: Preparation of (((((2R,3R,4S,5R)-5-(6-chloro-5-cyano-4-(3,3-difluoropyrrolidin-1-yl)-1H-pyrazolo[3,4-b]pyridin-1-yl)-4-fluoro-3-hydroxytetrahydrofuran-2-yl)methoxy)(hydroxy)phosphoryl)methyl)phosphonic acid: 6-chloro-4-(3,3-difluoropyrrolidin-1-yl)-1-[(2R,3S,4R,5R)-3-fluoro-4-hydroxy-5-(hydroxymethyl)tetrahydrofuran-2-yl]pyrazolo[3,4-b]pyridine-5-carbonitrile (20.0 mg, 0.05 mmol) was dissolved in trimethyl phosphate (3 mL) and cooled to 0° C., then a solution of P,P′-methylenebisphosphonic dichloride (50.0 mg, 0.2 mmol) in trimethyl phosphate (2 mL) was added dropwise. The reaction mixture was stirred at 0° C. for 2 hours, and then carefully quenched with 1M triethylammonium bicarbonate solution (1 mL) and stirred at 0° C. for 10 minutes, then 15 minutes at ambient temperature. The reaction mixture was purified by reserve phase HPLC (5% to 50% MeCN/water, 0.05% TFA) to give [[(2R,3R,4S,5R)-5-[6-chloro-5-cyano-4-(3,3-difluoropyrrolidin-1-yl)pyrazolo[3,4-b]pyridin-1-yl]-4-fluoro-3-hydroxy-tetrahydrofuran-2-yl]methoxy-hydroxy-phosphoryl]methylphosphonic acid (8 mg, 29%) as a solid. LCMS ESI (−) m/z 574 (M−H).
Step A: Preparation of 1-((2R,3S,4R,5R)-4-((tert-butyldimethylsilyl)oxy)-5-(((tert-butyldimethylsilyl)oxy)methyl)-3-fluorotetrahydrofuran-2-yl)-6-chloro-4-(3,3-difluoropyrrolidin-1-yl)-1H-pyrazolo[3,4-b]pyridine-5-carbonitrile: To a stirred solution of 6-chloro-4-(3,3-difluoropyrrolidin-1-yl)-1-[(2R,3S,4R,5R)-3-fluoro-4-hydroxy-5-(hydroxymethyl)tetrahydrofuran-2-yl]pyrazolo[3,4-b]pyridine-5-carbonitrile (90.0 mg, 0.22 mmol) in DCM (5 mL) was added imidazole (220.0 mg, 3.23 mmol), tert-butyl dimethylsilyl chloride (324.7 mg, 2.15 mmol) and DMAP (26.2 mg, 0.22 mmol). The mixture was stirred at ambient temperature for 2 days. Saturated ammonium chloride solution and ethyl acetate solution were added. The organic layer was separated, washed with brine, dried (sodium sulfate), filtered and concentrated under reduced pressure. The residue was purified with PTLC (petroleum ether/ethyl acetate=5:1) to give 1-[(2R,3S,4R,5R)-4-[tert-butyl(dimethyl)silyl]oxy-5-[[tert-butyl(dimethyl)silyl]oxymethyl]-3-fluoro-tetrahydrofuran-2-yl]-6-chloro-4-(3,3-difluoropyrrolidin-1-yl)pyrazolo[3,4-b]pyridine-5-carbonitrile (120 mg, 86%) as an oil.
Step B: Preparation of 1-((2R,3S,4R,5R)-4-((tert-butyldimethylsilyl)oxy)-3-fluoro-5-(hydroxymethyl)tetrahydrofuran-2-yl)-6-chloro-4-(3,3-difluoropyrrolidin-1-yl)-1H-pyrazolo[3,4-b]pyridine-5-carbonitrile: To a stirred solution of 1-[(2R,3S,4R,5R)-4-[tert-butyl(dimethyl)silyl]oxy-5-[[tert-butyl(dimethyl)silyl]oxymethyl]-3-fluoro-tetrahydrofuran-2-yl]-6-chloro-4-(3,3-difluoropyrrolidin-1-yl)pyrazolo[3,4-b]pyridine-5-carbonitrile (120.0 mg, 0.19 mmol) in THF (20 mL) was added water (1.8 mL) and trifluoroacetic acid (1.8 mL) dropwise at 0° C. and stirred at 0° C. for 2 hours. The mixture was poured into saturated sodium bicarbonate solution, then extracted with ethyl acetate. The organic layer was washed with brine, dried (sodium sulfate), filtered and concentrated under reduced pressure. The residue obtained was purified by PTLC (petroleum ether/ethyl acetate=3:2) to give 1-[(2R,3S,4R,5R)-4-[tert-butyl(dimethyl)silyl]oxy-3-fluoro-5-(hydroxymethyl)tetrahydrofuran-2-yl]-6-chloro-4-(3,3-difluoropyrrolidin-1-yl)pyrazolo[3,4-b]pyridine-5-carbonitrile (90 mg, 91%) as an oil.
Step C: Preparation of diethyl ((((2R,3R,4S,5R)-3-((tert-butyldimethylsilyl)oxy)-5-(6-chloro-5-cyano-4-(3,3-difluoropyrrolidin-1-yl)-1H-pyrazolo[3,4-b]pyridin-1-yl)-4-fluorotetrahydrofuran-2-yl)methoxy)methyl)phosphonate: To a stirred solution of 1-[(2R,3S,4R,5R)-4-[tert-butyl(dimethyl)silyl]oxy-3-fluoro-5-(hydroxymethyl)tetrahydrofuran-2-yl]-6-chloro-4-(3,3-difluoropyrrolidin-1-yl)pyrazolo[3,4-b]pyridine-5-carbonitrile (80.0 mg, 0.15 mmol) in DMSO (5 mL) was added (diethoxyphosphoryl)methyl 4-methylbenzenesulfonate (145.4 mg, 0.45 mmol) and magnesium tert-butoxide (153.8 mg, 0.9 mmol). The mixture was stirred at 80° C. for 4 hours. After cooling to ambient temperature, the mixture was diluted with ethyl acetate, washed with brine, dried (sodium sulfate), filtered and concentrated under reduced pressure. The residue obtained was purified by PTLC (petroleum ether/ethyl acetate=2:3) to give diethyl ((((2R,3R,4S,5R)-3-((tert-butyldimethylsilyl)oxy)-5-(6-chloro-5-cyano-4-(3,3-difluoropyrrolidin-1-yl)-1H-pyrazolo[3,4-b]pyridin-1-yl)-4-fluorotetrahydrofuran-2-yl)methoxy)methyl)phosphonate (50 mg, 48%) as a solid.
Step D: Preparation of ((((2R,3R,4S,5R)-5-(6-chloro-5-cyano-4-(3,3-difluoropyrrolidin-1-yl)-1H-pyrazolo[3,4-b]pyridin-1-yl)-4-fluoro-3-hydroxytetrahydrofuran-2-yl)methoxy)methyl)phosphonic acid: To a stirred solution of diethyl ((((2R,3R,4S,5R)-3-((tert-butyldimethylsilyl)oxy)-5-(6-chloro-5-cyano-4-(3,3-difluoropyrrolidin-1-yl)-1H-pyrazolo[3,4-b]pyridin-1-yl)-4-fluorotetrahydrofuran-2-yl)methoxy)methyl)phosphonate (50.0 mg, 0.07 mmol) and 2,6-lutidine (80.0 mg, 0.75 mmol) in DCM (5 mL) was added bromotrimethylsilane (120.0 mg, 0.78 mmol) at ambient temperature. The mixture was stirred at ambient temperature for 12 hours. Solvent was removed under reduced pressure. The residue obtained was dissolved in THF (10 mL) and triethylamine trihydrofluoride (0.3 mL) was added and then stirred at ambient temperature for 12 hours. Solvent was removed under reduced pressure, and the residue was purified by reserve phase HPLC (5% to 80%, MeCN/water, 0.05% TFA) to give ((((2R,3R,4S,5R)-5-(6-chloro-5-cyano-4-(3,3-difluoropyrrolidin-1-yl)-1H-pyrazolo[3,4-b]pyridin-1-yl)-4-fluoro-3-hydroxytetrahydrofuran-2-yl)methoxy)methyl)phosphonic acid (7.9 mg, 32%) as a solid. LCMS ESI (−) m/z 510 (M−H).
Step A: Preparation of [(3aR,4R,6R,6aR)-4-[6-chloro-5-cyano-4-(cyclopentylamino)pyrrolo[2,3-b]pyridin-1-yl]-2,2-dimethyl-3a,4,6,6a-tetrahydrofuro[3,4-d][1,3]dioxol-6-yl]methoxymethylphosphonic acid: To a solution of diethyl ((((3aR,4R,6R,6aR)-6-(6-chloro-5-cyano-4-(cyclopentylamino)-1H-pyrrolo[2,3-b]pyridin-1-yl)-2,2-dimethyltetrahydrofuro[3,4-d][1,3]dioxol-4-yl)methoxy)methyl)phosphonate (2.01 g, 3.45 mmol) in dichloromethane (20 mL) was added 2,6-lutidine (2.0 mL, 17.2 mmol) and bromotrimethyl silane (2.3 mL, 17.2 mmol) at ambient temperature. The reaction mixture was stirred at this temperature for 18 hours. The reaction mixture was concentrated under reduced pressure. The residue was co-evaporated with methanol three times to give a light yellow solid. Saturated sodium bicarbonate solution (30 mL) and MTBE (50 mL) were added. The solution was stirred at ambient temperature for 10 minutes. The aqueous layer was separated, acidified with solid potassium hydrogen sulfate to pH-2 and extracted with ethyl acetate (100 mL). The organic layer was separated, dried (sodium sulfate), filtered and concentrated under reduced pressure to give [(3 aR,4R,6R,6aR)-4-[6-chloro-5-cyano-4-(cyclop entylamino)pyrrolo[2,3-b]pyridin-1-yl]-2,2-dimethyl-3a,4,6,6a-tetrahydrofuro[3,4-d][1,3]dioxol-6-yl]methoxymethylphosphonic acid (1.7 g, 93%) as a solid. LCMS ESI (+) m/z 527 (M+H).
Step B: Preparation of [(3aR,4R,6R,6aR)-4-[6-chloro-5-cyano-4-(cyclopentylamino)pyrrolo[2,3-b]pyridin-1-yl]-2,2-dimethyl-3a,4,6,6a-tetrahydrofuro[3,4-d][1,3]dioxol-6-yl]methoxymethyl-phenoxy-phosphinic acid: To a solution of [(3aR,4R,6R,6aR)-4-[6-chloro-5-cyano-4-(cyclopentylamino)pyrrolo[2,3-b]pyridin-1-yl]-2,2-dimethyl-3a,4,6,6a-tetrahydrofuro[3,4-d][1,3]dioxol-6-yl]methoxymethylphosphonic acid (0.51 g, 0.97 mmol) and a drop of DMF in dichloromethane (3 mL) was added oxalyl chloride (0.18 mL, 2.13 mmol) at ambient temperature. The reaction mixture was stirred at this temperature for 1 hour. Solvent was removed under reduced pressure. The residue was dissolved in DCM (2 mL) and triethylamine (0.27 mL, 1.93 mmol) was added. Phenol (0.09 g, 0.97 mmol) in DCM (1 mL) was added slowly by syringe pump over 1 hour at ambient temperature. The mixture was stirred at ambient temperature for 18 hours. Saturated potassium hydrogen sulfate solution (10 mL) and DCM (10 mL) were added. The organic layer was separated, washed with brine, dried (sodium sulfate), filter and concentrated under reduced pressure to give [(3aR,4R,6R,6aR)-4-[6-chloro-5-cyano-4-(cyclopentylamino)pyrrolo[2,3-b]pyridin-1-yl]-2,2-dimethyl-3a,4,6,6a-tetrahydrofuro[3,4-d][1,3]dioxol-6-yl]methoxymethyl-phenoxy-phosphinic acid (0.49 g, 84%) as a solid. LCMS ESI (+) m/z 603 (M+H).
Step C: Preparation of ((((R)-((((3aR,4R,6R,6aR)-6-(6-chloro-5-cyano-4-(cyclopentyloxy)-1H-pyrrolo[2,3-b]pyridin-1-yl)-2,2-dimethyltetrahydrofuro[3,4-d][1,3]dioxol-4-yl)methoxy)methyl)(phenoxy)phosphoryl)-L-alanyl)oxy)methyl isobutyrate and ((((S)-((((3 aR,4R,6R,6aR)-6-(6-chloro-5-cyano-4-(cyclopentylamino)-1H-pyrrolo[2,3-b]pyridin-1-yl)-2,2-dimethyltetrahydrofuro[3,4-d][1,3]dioxol-4-yl)methoxy)methyl)(phenoxy)phosphoryl)-L-alanyl)oxy)methyl isobutyrate: To a solution of [(3aR,4R,6R,6aR)-4-[6-chloro-5-cyano-4-(cyclopentylamino)pyrrolo[2,3-b]pyridin-1-yl]-2,2-dimethyl-3a,4,6,6a-tetrahydrofuro[3,4-d][1,3]dioxol-6-yl]methoxymethyl-phenoxy-phosphinic acid (0.11 g, 0.18 mmol) and a drop of DMF in dichloromethane (2 mL) was added oxalyl chloride (0.02 mL, 0.22 mmol) at ambient temperature. The reaction mixture was stirred at this temperature for 1 hour. Solvent was removed under reduced pressure. The residue was dissolved in DCM (1 mL) and [(2S)-2-aminopropanoyl]oxymethyl 2-methylpropanoate hydrochloride (0.08 g, 0.36 mmol) in DCM (1 ml) was added at −78° C. After stirred at −78° C. for 5 minutes, triethylamine (0.1 mL, 0.73 mmol) was added. The reaction mixture was stirred at −78° C. for 2 hours. Brine (10 mL) and ethyl acetate (10 mL) were added and the reaction mixture was warmed to ambient temperature. The organic layer was separated, dried (sodium sulfate), filtered and concentrated under reduced pressure. The residue obtained was purified by flash chromatography on silica gel 1:1 hexane/ethyl acetate, the on PTLC to give ((((R)-((((3aR,4R,6R,6aR)-6-(6-chloro-5-cyano-4-(cyclopentyloxy)-1H-pyrrolo[2,3-b]pyridin-1-yl)-2,2-dimethyltetrahydrofuro[3,4-d][1,3]dioxol-4-yl)methoxy)methyl)(phenoxy)phosphoryl)-L-alanyl)oxy)methyl isobutyrate (0.016 g, 11%) as a solid LCMS ESI (+) m/z 774 (M+H); and ((((S)-((((3aR,4R,6R,6aR)-6-(6-chloro-5-cyano-4-(cyclopentylamino)-1H-pyrrolo[2,3-b]pyridin-1-yl)-2,2-dimethyltetrahydrofuro[3,4-d][1,3]dioxol-4-yl)methoxy)methyl)(phenoxy)phosphoryl)-L-alanyl)oxy)methyl isobutyrate (0.016 g, 11%) as a solid. LCMS ESI (+) m/z 774 (M+H).
Step D: Preparation of ((((R)-((((3aR,4R,6R,6aR)-6-(6-chloro-5-cyano-4-(cyclopentyloxy)-1H-pyrrolo[2,3-b]pyridin-1-yl)-2,2-dimethyltetrahydrofuro[3,4-d][1,3]dioxol-4-yl)methoxy)methyl)(phenoxy)phosphoryl)-L-alanyl)oxy)methyl isobutyrate: A solution of ((((R)-((((3aR,4R,6R,6aR)-6-(6-chloro-5-cyano-4-(cyclopentyloxy)-1H-pyrrolo[2,3-b]pyridin-1-yl)-2,2-dimethyltetrahydrofuro[3,4-d][1,3]dioxol-4-yl)methoxy)methyl)(phenoxy)phosphoryl)-L-alanyl)oxy)methyl isobutyrate (0.02 g, 0.02 mmol) in 80% aqueous formic acid solution (2 mL) was stirred at ambient temperature for 10 minutes. Solvent was removed under reduced pressure. The residue obtained was purified by reverse phase HPLC (10-95% acetonitrile/water, 0.1% TFA) to give ((((R)-((((2R,3S,4R,5R)-5-(6-chloro-5-cyano-4-(cyclopentylamino)-1H-pyrrolo[2,3-b]pyridin-1-yl)-3,4-dihydroxytetrahydrofuran-2-yl)methoxy)methyl)(phenoxy)phosphoryl)-L-alanyl)oxy)methyl isobutyrate (0.008 g, 45%) as a solid. LCMS ESI (+) m/z 734 (M+H).
Step A: Preparation of [2-[[(3aR,6R,6aR)-4-[6-chloro-5-cyano-4-(cyclopentylamino)pyrrolo[2,3-b]pyridin-1-yl]-2,2-dimethyl-3a,4,6,6a-tetrahydrofuro[3,4-d][1,3]dioxol-6-yl]methoxymethyl-phenoxy-phosphoryl]oxyacetyl]oxymethyl 2,2-dimethylpropanoate: A solution of [(3aR,6R,6aR)-4-[6-chloro-5-cyano-4-(cyclopentylamino)pyrrolo[2,3-b]pyridin-1-yl]-2,2-dimethyl-3a,4,6,6a-tetrahydrofuro[3,4-d][1,3]dioxol-6-yl]methoxymethylphosphonic acid (0.10 g, 0.19 mmol), (2-hydroxyacetyl)oxymethyl 2,2-dimethylpropanoate (0.11 g, 0.57 mmol) and DCC (0.12 g, 0.57 mmol) in pyridine (1 mL) was stirred at 70° C. for 2 hours. After cooling to ambient temperature, pyridine was removed under reduced pressure. Water (10 mL) and MTBE (10 mL) were added. Solid was removed by filtration. The organic layer was separated, dried (sodium sulfate), filtered and concentrated under reduced pressure. The residue obtained was purified by flash chromatography on silica gel (1:1 hexane/ethyl acetate) to give [2-[[(3aR,6R,6aR)-4-[6-chloro-5-cyano-4-(cyclop entylamino)pyrrolo[2,3-b]pyridin-1-yl]-2,2-dimethyl-3a,4,6,6a-tetrahydrofuro[3,4-d][1,3]dioxol-6-yl]methoxymethyl-phenoxy-phosphoryl]oxyacetyl]oxymethyl 2,2-dimethylpropanoate (0.065 g, 44%) as a solid.
Step B: Preparation of (2-((((((2R,3S,4R,5R)-5-(6-chloro-5-cyano-4-(cyclopentylamino)-1H-pyrrolo[2,3-b]pyridin-1-yl)-3,4-dihydroxytetrahydrofuran-2-yl)methoxy)methyl)(phenoxy)phosphoryl)oxy)acetoxy)methyl pivalate: A solution of [2-[[(3aR,4R,6R,6aR)-4-[6-chloro-5-cyano-4-(cyclopentylamino)pyrrolo[2,3-b]pyridin-1-yl]-2,2-dimethyl-3a,4,6,6a-tetrahydrofuro[3,4-d][1,3]dioxol-6-yl]methoxymethyl-phenoxy-phosphoryl]oxyacetyl]oxymethyl 2,2-dimethylpropanoate (0.07 g, 0.08 mmol) in 80% aqueous formic acid solution (2 mL) was stirred at ambient temperature for 30 minutes. Solvent was removed under reduced pressure. The residue obtained was purified by reverse phase HPLC (10-95% acetonitrile/water, 0.1% TFA) to give (2-((((((2R,3S,4R,5R)-5-(6-chloro-5-cyano-4-(cyclopentylamino)-1H-pyrrolo[2,3-b]pyridin-1-yl)-3,4-dihydroxytetrahydrofuran-2-yl)methoxy)methyl)(phenoxy)phosphoryl)oxy)acetoxy) methyl pivalate (0.037 g, 52%) as a solid. LCMS ESI (+) m/z 735 (M+H).
Step A: Preparation of 4-chloro-5-cyano-1H-pyrrolo[2,3-b]pyridine 7-oxide: A suspension of 4-chloro-1H-Pyrrolo[2,3-b]pyridine-5-carbonitrile (10.0 g, 56.3 mmol) in ethyl acetate (150 mL) was added 3-chloroperbenzoic acid (18.9 g, 84.5 mmol) at ambient temperature. After addition, the reaction mixture was stirred at 52° C. (bath) for 3 hours. After cooling to ambient temperature, hexane (110 mL) was added and the mixture was stirred at ambient temperature for 10 minutes. Solid was collected by filtration, washed with MTBE and dried to give 4-chloro-7-oxo-1H-pyrrolo[2,3-b]pyridine-5-carbonitrile (8.2 g, 75%) as a solid. LCMS ESI (+) m/z 194 (M+H).
Step B: Preparation of 4,6-dichloro-1H-pyrrolo[2,3-b]pyridine-5-carbonitrile: A suspension of 4-chloro-7-oxo-1H-pyrrolo[2,3-b]pyridine-5-carbonitrile (8.2 g, 42.4 mmol) in NMP (80 mL) was added phosphorus (V) oxychloride (7.9 mL, 84.7 mmol) at 0° C. After addition, the reaction mixture was stirred at 0° C. for 1 hour. Ice-water (300 mL) was added and the mixture was stirred at ambient temperature for 30 minutes. Solid was collected by filtration, washed with water and dried to give 4,6-dichloro-1H-pyrrolo[2,3-b]pyridine-5-carbonitrile (9.0 g, 99%) as a pink solid. LCMS ESI (−) m/z 210 (M−H).
Step C: Preparation of (S)-6-chloro-4-((1-(4-fluorophenyl)ethyl)amino)-1H-pyrrolo[2,3-b]pyridine-5-carbonitrile: To a solution of 4,6-dichloro-1H-pyrrolo[2,3-b]pyridine-5-carbonitrile (1000 mg, 4.72 mmol) in NMP (10 mL) was added (S)-1-(4-fluorophenyl)ethan-1-amine (1312 mg, 9.43 mmol) and triethylamine (715.1 mg, 7.08 mmol) under nitrogen. The mixture was stirred at 100° C. After 5 hrs, the mixture was cooled to 15° C., then water was added. After stiffing for 0.5 h, the mixture was filtered. The solid was dissolved into toluene and concentrated under reduced pressure, twice. The residue was washed with petroleum ether, and the solid was dried under vacuum to give (S)-6-chloro-4-((1-(4-fluorophenyl)ethyl)amino)-1H-pyrrolo[2,3-b]pyridine-5-carbonitrile (910 mg, 2.89 mmol, 61% yield).
Step D. Preparation 1-((3aR,4R,6R,6aR)-6-(((tert-butyldimethylsilyl)oxy)methyl)-2,2-dimethyltetrahydrofuro[3,4-d][1,3]dioxol-4-yl)-6-chloro-4-(((S)-1-(4-fluorophenyl)ethyl)amino)-1H-pyrrolo[2,3-b]pyridine-5-carbonitrile: To a solution of (S)-6-chloro-4-((1-(4-fluorophenyl)ethyl)amino)-1H-pyrrolo[2,3-b]pyridine-5-carbonitrile (500 .mg, 1.59 mmol) in THF (6 mL) was added sodium hydride, 60% dispersion in mineral oil (127.2 mg, 3.18 mmol) at 0° C. under nitrogen. After 0.5 h, tert-butyl(((3aR,4R,6R,6aR)-6-chloro-2,2-dimethyltetrahydrofuro[3,4-d][1,3]dioxol-4-yl)methoxy)dimethylsilane (1026 mg, 3.18 mmol) in acetonitrile (6.2 mL) was added. The mixture was stirred at 25° C. for 18 hrs. The mixture was concentrated in under reduced pressure to give 1-[(3aR,4R,6R,6aR)-6-[[tert-butyl(dimethyl)silyl]oxymethyl]-2,2-dimethyl-3a,4,6,6a-tetrahydrofuro[3,4-d][1,3]dioxol-4-yl]-6-chloro-4-[[(1S)-1-(4-fluorophenyl)ethyl]amino]pyrrolo[2,3-b]pyridine-5-carbonitrile (2.4 g) as a crude product which was carried on without further purification.
Step E. Preparation of 6-chloro-4-(((S)-1-(4-fluorophenyl)ethyl)amino)-1-((3aR,4R,6R,6aR)-6-(hydroxymethyl)-2,2-dimethyltetrahydrofuro[3,4-d][1,3]dioxol-4-yl)-1H-pyrrolo[2,3-b]pyridine-5-carbonitrile: To a solution of 1-[(3aR,4R,6R,6aR)-6-[[tert-butyl(dimethyl)silyl]oxymethyl]-2,2-dimethyl-3a,4,6,6a-tetrahydrofuro[3,4-d][1,3]dioxol-4-yl]-6-chloro-4-[[(1S)-1-(4-fluorophenyl)ethyl]amino]pyrrolo[2,3-b]pyridine-5-carbonitrile (1.2 g, 2 mmol) (crude) in THF (5 mL) was added TBAF (2 mL, 1.0 M in THF) at 25° C. After 2 h, the mixture was quenched with saturated aqueous NH4Cl solution. Ethyl acetate was added, and the layers were separated. The organic layer was dried over Na2SO4, filtered, and concentrated. The residue was purified by PTLC (petroleum ether:ethyl acetate=1:1) to give 6-chloro-4-(((S)-1-(4-fluorophenyl)ethyl)amino)-1-((3aR,4R,6R,6aR)-6-(hydroxymethyl)-2,2-dimethyltetrahydrofuro[3,4-d][1,3]dioxol-4-yl)-1H-pyrrolo[2,3-b]pyridine-5-carbonitrile (110 mg, 0.23 mmol, 11% yield).
Step F. Preparation of ((3aR,4R,6R,6aR)-6-(6-chloro-5-cyano-4-(((S)-1-(4-fluorophenyl)ethyl)amino)-1H-pyrrolo[2,3-b]pyridin-1-yl)-2,2-dimethyltetrahydrofuro[3,4-d][1,3]dioxol-4-yl)methyl methanesulfonate: To a solution 6-chloro-4-(((S)-1-(4-fluorophenyl)ethyl)amino)-1-((3aR,4R,6R,6aR)-6-(hydroxymethyl)-2,2-dimethyltetrahydrofuro[3,4-d][1,3]dioxol-4-yl)-1H-pyrrolo[2,3-b]pyridine-5-carbonitrile (100 mg, 0.21 mmol) in pyridine (2 mL) was added methanesulfonyl chloride (35.3 mg, 0.31 mmol) at 0° C. under nitrogen, and the mixture was stirred at 0° C. After 2 h, the mixture was partitioned between water and ethyl acetate. The organic layer was dried over Na2SO4, filtered, concentrated. The residue was purified by PTLC (petroleum ether:ethyl acetate=2:1) to give ((3aR,4R,6R,6aR)-6-(6-chloro-5-cyano-4-(((S)-1-(4-fluorophenyl)ethyl)amino)-1H-pyrrolo[2,3-b]pyridin-1-yl)-2,2-dimethyltetrahydrofuro[3,4-d][1,3]dioxol-4-yl)methyl methanesulfonate (102 mg, 0.18 mmol, 88% yield).
Step G. Preparation of diethyl (((((3aS,4S,6R,6aR)-6-(6-chloro-5-cyano-4-(((S)-1-(4-fluorophenyl)ethyl)amino)-1H-pyrrolo[2,3-b]pyridin-1-yl)-2,2-dimethyltetrahydrofuro[3,4-d][1,3]dioxol-4-yl)methyl)thio)methyl)phosphonate: To a solution of sodium ethoxide (48.9 mg, 0.72 mmol) in DMF (4 mL) was added 2-((diethoxyphosphoryl)methyl)isothiouronium 4-methylbenzenesulfonate (144 mg, 0.36 mmol) under nitrogen at 25° C. After 0.5 h ((3aR,4R,6R,6aR)-6-(6-chloro-5-cyano-4-(((S)-1-(4-fluorophenyl)ethyl)amino)-1H-pyrrolo[2,3-b]pyridin-1-yl)-2,2-dimethyltetrahydrofuro[3,4-d][1,3]dioxol-4-yl)methyl methanesulfonate (102.1 mg, 0.18 mmol) in DMF (1 mL) was added. The mixture was stirred at 40° C. After 16 h, the mixture was diluted with ethyl acetate and then quenched with H2O. The organic layer was separated and then dried over Na2SO4, filtered, concentrated and purified by PTLC (petroleum ether:ethyl acetate=1:3) to give diethyl (((((3aS,4S,6R,6aR)-6-(6-chloro-5-cyano-4-(((S)-1-(4-fluorophenyl)ethyl)amino)-1H-pyrrolo[2,3-b]pyridin-1-yl)-2,2-dimethyltetrahydrofuro[3,4-d][1,3]dioxol-4-yl)methyl)thio)methyl)phosphonate (70.5 mg, 0.11 mmol, 59% yield).
Step H. Preparation of diethyl (((((3aS,4S,6R,6aR)-6-(6-chloro-5-cyano-4-(((S)-1-(4-fluorophenyl)ethyl)amino)-1H-pyrrolo[2,3-b]pyridin-1-yl)-2,2-dimethyltetrahydrofuro[3,4-d][1,3]dioxol-4-yl)methyl)sulfonyl)methyl)phosphonate: To a solution of diethyl (((((3aS,4S,6R,6aR)-6-(6-chloro-5-cyano-4-(((S)-1-(4-fluorophenyl)ethyl)amino)-1H-pyrrolo[2,3-b]pyridin-1-yl)-2,2-dimethyltetrahydrofuro[3,4-d][1,3]dioxol-4-yl)methyl)thio)methyl)phosphonate (70.5 mg, 0.11 mmol) in acetonitrile (1.5 mL) and water (1.5 mL) was added Oxone® (202.6 mg, 0.33 mmol). The mixture was stirred at 25° C. and after 6 h, the mixture was partitioned between water and ethyl acetate. The organic layer was dried over Na2SO4, filtered, and concentrated. The residue was purified by PTLC (petroleum ether:ethyl acetate=1:3) to give diethyl (((((3aS,4S,6R,6aR)-6-(6-chloro-5-cyano-4-(((S)-1-(4-fluorophenyl)ethyl)amino)-1H-pyrrolo[2,3-b]pyridin-1-yl)-2,2-dimethyltetrahydrofuro[3,4-d][1,3]dioxol-4-yl)methyl)sulfonyl)methyl)phosphonate (40 mg, 0.059 mmol, 54% yield).
Step I. Preparation of (((((3aS,4S,6R,6aR)-6-(6-chloro-5-cyano-4-(((S)-1-(4-fluorophenyl)ethyl)amino)-1H-pyrrolo[2,3-b]pyridin-1-yl)-2,2-dimethyltetrahydrofuro[3,4-d][1,3]dioxol-4-yl)methyl)sulfonyl)methyl)phosphonic acid: To a solution of diethyl (((((3aS,4S,6R,6aR)-6-(6-chloro-5-cyano-4-(((S)-1-(4-fluorophenyl)ethyl)amino)-1H-pyrrolo[2,3-b]pyridin-1-yl)-2,2-dimethyltetrahydrofuro[3,4-d][1,3]dioxol-4-yl)methyl)sulfonyl)methyl)phosphonate (40.2 mg, 0.06 mmol) in DCM (4 mL) was added 2,6-lutidine (120 mg) and bromotrimethyl silane (180 mg) in a sealed tube. The mixture was stirred at 25° C. After 16 h, the solvent was removed under reduced pressure. The residue was dissolved in acetonitrile and concentrated twice to give (((((3aS,4S,6R,6aR)-6-(6-chloro-5-cyano-4-(((S)-1-(4-fluorophenyl)ethyl)amino)-1H-pyrrolo[2,3-b]pyridin-1-yl)-2,2-dimethyltetrahydrofuro[3,4-d][1,3]dioxol-4-yl)methyl)sulfonyl)methyl)phosphonic acid (51.2 mg, 0.08 mmol), which was used without further purification.
Step J. Preparation of (((((2S,3S,4R,5R)-5-(6-chloro-5-cyano-4-(((S)-1-(4-fluorophenyl)ethyl)amino)-1H-pyrrolo[2,3-b]pyridin-1-yl)-3,4-dihydroxytetrahydrofuran-2-yl)methyl)sulfonyl)methyl)phosphonic acid: A mixture of (((((3aS,4S,6R,6aR)-6-(6-chloro-5-cyano-4-(((S)-1-(4-fluorophenyl)ethyl)amino)-1H-pyrrolo[2,3-b]pyridin-1-yl)-2,2-dimethyltetrahydrofuro[3,4-d][1,3]dioxol-4-yl)methyl)sulfonyl)methyl)phosphonic acid (50.2 mg, 0.08 mmol) in 80% aqueous formic acid (2 mL) was stirred at 25° C. After 2 h, the solvent was removed under reduced pressure. The residue was purified by prep-HPLC to give (((((2S,3S,4R,5R)-5-(6-chloro-5-cyano-4-(((S)-1-(4-fluorophenyl)ethyl)amino)-1H-pyrrolo[2,3-b]pyridin-1-yl)-3,4-dihydroxytetrahydrofuran-2-yl)methyl)sulfonyl)methyl)phosphonic acid (16.5 mg, 0.024 mmol, 29% yield), isolated as a TFA-salt. LCMS ESI (+) m/z [M+H]+=589. 1H NMR (400 MHz, CD3OD, δ): 7.44-7.03 (m, 2H), 7.32 (d, 1H), 7.08-7.04 (m, 2H), 6.63 (d, 1H) 6.11 (d, 1H), 5.50-5.48 (m, 1H), 4.60-4.50 (m, 2H), 4.27-4.25 (m, 1H), 4.01 (dd, 1H), 3.73-3.66 (m, 2H), 3.58-3.54 (m, 1H), 1.66 (d, 3H); 19F NMR (375 MHz, CD3OD, δ): −117.64 (m); 31P NMR (162 MHz, CD3OD, δ): 8.32 (s).
Step A: Preparation of 4-chloro-5-cyano-1H-pyrrolo[2,3-b]pyridine 7-oxide: A suspension of 4-chloro-1H-Pyrrolo[2,3-b]pyridine-5-carbonitrile (10.0 g, 56.3 mmol) in ethyl acetate (150 mL) was added 3-chloroperbenzoic acid (18.9 g, 84.5 mmol) at ambient temperature. After addition, the reaction mixture was stirred at 52° C. (bath) for 3 hours. After cooling to ambient temperature, hexane (110 mL) was added and the mixture was stirred at ambient temperature for 10 minutes. Solid was collected by filtration, washed with MTBE and dried to give 4-chloro-7-oxo-1H-pyrrolo[2,3-b]pyridine-5-carbonitrile (8.2 g, 75%) as a solid. LCMS ESI (+) m/z 194 (M+H).
Step B: Preparation of 4,6-dichloro-1H-pyrrolo[2,3-b]pyridine-5-carbonitrile: A suspension of 4-chloro-7-oxo-1H-pyrrolo[2,3-b]pyridine-5-carbonitrile (8.2 g, 42.4 mmol) in NMP (80 mL) was added phosphorus (V) oxychloride (7.9 mL, 84.7 mmol) at 0° C. After addition, the reaction mixture was stirred at 0° C. for 1 hour. Ice-water (300 mL) was added and the mixture was stirred at ambient temperature for 30 minutes. Solid were collected by filtration, washed with water and dried to give 4,6-dichloro-1H-pyrrolo[2,3-b]pyridine-5-carbonitrile (9.0 g, 99%) as a pink solid. LCMS ESI (−) m/z 210 (M−H).
Step C: Preparation of 4,6-dichloro-1-((3aR,4R,6R,6aR)-6-(hydroxymethyl)-2,2-dimethyltetrahydrofuro[3,4-d][1,3]dioxol-4-yl)-1H-pyrrolo[2,3-b]pyridine-5-carbonitrile: In a dry 100 mL flask, CCl4 (6.82 mL, 70.5 mmol) and (3aR,6R,6aR)-6-(((tert-butyldimethylsilyl)oxy)methyl)-2,2-dimethyltetrahydrofuro[3,4-d][1,3]dioxol-4-ol (20.57 g, 67.58 mmol) was dissolved in toluene (100 mL) and cooled in a −10° C. bath. Tris(dimethylamino)phosphine (12.8 mL, 70.5 mmol) was added slowly at −10° C. After addition, the mixture was stirred with warming to 0° C. over 1 hour. Water (50 mL) and MTBE (20 mL) were added. The organic layer was separated, dried (sodium sulfate), filtered and concentrated under reduced pressure. The residue obtained was dissolved in acetonitrile (20 mL) which was used directly in the next step.
In a separate flask, 4,6-dichloro-1H-pyrrolo[2,3-b]pyridine-5-carbonitrile (6.23 g, 29.4 mmol) in acetonitrile (80 mL) was added sodium hydride, 60% dispersion in mineral oil (1.76 g, 44.07 mmol) at ambient temperature. The mixture was stirred at ambient temperature for 2 h. The ribose mixture prepared above was added at ambient temperature, and the reaction mixture was stirred at ambient temperature for 20 hours. Ice-water (100 mL) was added, then MTBE (200 mL) was added. The organic layer was separated, washed with brine, dried (sodium sulfate) and concentrated under reduced pressure. The residue obtained was dissolved in THF (10 mL) and Et3N3HF (9.58 mL, 58.76 mmol) was added and then stirred at ambient temperature for 5 hours. Saturated sodium bicarbonate solution (20 mL) and ethyl acetate (50 mL) were added. The organic layer was separated, dried (sodium sulfate), filtered and concentrated under reduced pressure. The residue obtained was purified by flash chromatography on silica gel 1:1 hexane/ethyl acetate to give 4,6-dichloro-1-((3aR,4R,6R,6aR)-6-(hydroxymethyl)-2,2-dimethyltetrahydrofuro[3,4-d][1,3]dioxol-4-yl)-1H-pyrrolo[2,3-b]pyridine-5-carbonitrile (7.92 g, 20.6 mmol, 70% yield) as white solid. LCMS ESI(+) m/z [M+H]+=385.
Step D: Preparation of 6-chloro-4-(((R)-1-(4-fluorophenyl)ethyl)amino)-1-((3aR,4R,6R,6aR)-6-(hydroxymethyl)-2,2-dimethyltetrahydrofuro[3,4-d][1,3]dioxol-4-yl)-1H-pyrrolo[2,3-b]pyridine-5-carbonitrile: A mixture of triethylamine (0.63 mL, 4.53 mmol), (R)-1-(4-fluorophenyl)ethan-1-amine (0.42 g, 3.02 mmol) and 4,6-dichloro-1-((3aR,4R,6R,6aR)-6-(hydroxymethyl)-2,2-dimethyltetrahydrofuro[3,4-d][1,3]dioxol-4-yl)-1H-pyrrolo[2,3-b]pyridine-5-carbonitrile (0.58 g, 1.5 mmol) in sec-butanol (5 mL) was stirred at 100° C. for 18 hours. After being cooled to ambient temperature, the solvent was removed under reduced pressure. The residue obtained was purified by flash chromatography on silica gel to give 6-chloro-4-(((R)-1-(4-fluorophenyl)ethyl)amino)-1-((3aR,4R,6R,6aR)-6-(hydroxymethyl)-2,2-dimethyltetrahydrofuro[3,4-d][1,3]dioxol-4-yl)-1H-pyrrolo[2,3-b]pyridine-5-carbonitrile (0.66 g, 1.35 mmol, 90% yield) as an oil. LCMS ESI(+) m/z [M+H]+=487.
Step E. Preparation of ((3aR,4R,6R,6aR)-6-(6-chloro-5-cyano-4-(((R)-1-(4-fluorophenyl)ethyl)amino)-1H-pyrrolo[2,3-b]pyridin-1-yl)-2,2-dimethyltetrahydrofuro[3,4-d][1,3]dioxol-4-yl)methyl methanesulfonate: To a solution of 6-chloro-4-(((R)-1-(4-fluorophenyl)ethyl)amino)-1-((3aR,4R,6R,6aR)-6-(hydroxymethyl)-2,2-dimethyltetrahydrofuro[3,4-d][1,3]dioxol-4-yl)-1H-pyrrolo[2,3-b]pyridine-5-carbonitrile (0.66 g, 1.35 mmol) in pyridine (4 mL) was added methanesulfonyl chloride (0.13 mL, 1.62 mmol) at 0° C. The reaction mixture was stirred at 0° C. for 2 h. Water (20 mL) and MTBE (30 mL) were added. The organic layer was separated, washed with brine, dried (sodium sulfate), filtered and concentrated under reduced pressure to give ((3aR,4R,6R,6aR)-6-(6-chloro-5-cyano-4-(((R)-1-(4-fluorophenyl)ethyl)amino)-1H-pyrrolo[2,3-b]pyridin-1-yl)-2,2-dimethyltetrahydrofuro[3,4-d][1,3]dioxol-4-yl)methyl methanesulfonate as an oil, which was used without further purification. LCMS ESI(+) m/z [M+H]+=565.
Step F. Preparation of S-(((3aS,4R,6R,6aR)-6-(6-chloro-5-cyano-4-(((R)-1-(4-fluorophenyl)ethyl)amino)-1H-pyrrolo[2,3-b]pyridin-1-yl)-2,2-dimethyltetrahydrofuro[3,4-d][1,3]dioxol-4-yl)methyl) ethanethioate: To a solution of ((3aR,4R,6R,6aR)-6-(6-chloro-5-cyano-4-(((R)-1-(4-fluorophenyl)ethyl)amino)-1H-pyrrolo[2,3-b]pyridin-1-yl)-2,2-dimethyltetrahydrofuro[3,4-d][1,3]dioxol-4-yl)methyl methanesulfonate (0.77 g, 1.35 mmol) in DMF (10 mL) was added tetrabutylammonium bromide (0.04 g, 0.14 mmol) and cesium carbonate (0.88 g, 2.71 mmol) at ambient temperature. The reaction mixture was stirred for 30 minutes, then thiolacetic acid (0.19 mL, 2.71 mmol) was added. The mixture was stirred at ambient temperature for 18 hours. Water (20 mL) and MTBE (30 mL) were added. The organic layer was separated, washed with brine, dried (sodium sulfate), filtered and concentrated under reduced pressure. The residue obtained was purified by flash chromatography on silica gel, eluting with 2:1 hexane/ethyl acetate to give S-(((3aS,4S,6R,6aR)-6-(6-chloro-5-cyano-4-(((R)-1-(4-fluorophenyl)ethyl)amino)-1H-pyrrolo[2,3-b]pyridin-1-yl)-2,2-dimethyltetrahydrofuro[3,4-d][1,3]dioxol-4-yl)methyl) ethanethioate (0.59 g, 1.1 mmol, 80% yield) as a solid. LCMS ESI(+) m/z [M+H]+=545.
Step G. Preparation of diethyl (((((3aS,4S,6R,6aR)-6-(6-chloro-5-cyano-4-(((R)-1-(4-fluorophenyl)ethyl)amino)-1H-pyrrolo[2,3-b]pyridin-1-yl)-2,2-dimethyltetrahydrofuro[3,4-d][1,3]dioxol-4-yl)methyl)thio)methyl)phosphonate: To a suspension of S-[[(3aR,4R,6S,6aS)-4-[6-chloro-5-cyano-4-[[(1R)-1-(4-fluorophenyl)ethyl]amino]pyrrolo[2,3-b]pyridin-1-yl]-2,2-dimethyl-3a,4,6,6a-tetrahydrofuro[3,4-d][1,3]dioxol-6-yl]methyl]ethanethioate (0.59 g, 1.1 mmol) in ethanol (10 mL) was added sodium ethoxide solution, 21% in ethanol (0.81 mL, 2.17 mmol) at ambient temperature. It was stirred at ambient temperature for 10 minutes, causing a dark homogenous solution to form. (Diethoxyphosphoryl)methyl 4-methylbenzenesulfonate (0.42 g, 1.3 mmol) was added at ambient temperature, then the reaction mixture was stirred in a 56° C. bath for 1 hour. After the mixture had cooled to ambient temperature, ethyl acetate (50 mL) and brine (40 mL) were added. The organic layer was separated, washed with brine, dried (sodium sulfate), filtered and concentrated under reduced pressure. The residue obtained was purified by flash chromatography on silica gel 1:2 hexane/ethyl acetate to give diethyl (((((3aS,4S,6R,6aR)-6-(6-chloro-5-cyano-4-(((R)-1-(4-fluorophenyl)ethyl)amino)-1H-pyrrolo[2,3-b]pyridin-1-yl)-2,2-dimethyltetrahydrofuro[3,4-d][1,3]dioxol-4-yl)methyl)thio)methyl)phosphonate (0.412 g, 0.63 mmol, 58% yield) as a solid. LCMS ESI(+) m/z [M+H]+=653.
Step H. Preparation of diethyl (((((3aS,4S,6R,6aR)-6-(6-chloro-5-cyano-4-(((R)-1-(4-fluorophenyl)ethyl)amino)-1H-pyrrolo[2,3-b]pyridin-1-yl)-2,2-dimethyltetrahydrofuro[3,4-d][1,3]dioxol-4-yl)methyl)sulfonyl)methyl)phosphonate: To a solution of diethyl (((((3aS,4S,6R,6aR)-6-(6-chloro-5-cyano-4-(((R)-1-(4-fluorophenyl)ethyl)amino)-1H-pyrrolo[2,3-b]pyridin-1-yl)-2,2-dimethyltetrahydrofuro[3,4-d][1,3]dioxol-4-yl)methyl)thio)methyl)phosphonate in acetonitrile (3 mL) and water (3 mL) was added Oxone© (1.16 g, 3.79 mmol) and potassium carbonate (0.26 g, 1.89 mmol) at ambient temperature. The mixture was stirred at ambient temperature for 6 hours. Ethyl acetate (20 mL) and water (10 mL) were added. The solid was removed by filtration and washed with ethyl acetate (20 mL). The organic layer was separated, washed with brine, dried (sodium sulfate), filtered and concentrated under reduced pressure. The residue obtained was purified by flash chromatography on silica gel eluting with ethyl acetate to give diethyl (((((3aS,4S,6R,6aR)-6-(6-chloro-5-cyano-4-(((R)-1-(4-fluorophenyl)ethyl)amino)-1H-pyrrolo[2,3-b]pyridin-1-yl)-2,2-dimethyltetrahydrofuro[3,4-d][1,3]dioxol-4-yl)methyl)sulfonyl)methyl)phosphonate (0.34 g, 0.5 mmol, 79% yield). LCMS (ESI)+m/z [M+H]+ 685.
Step I. Preparation of (((((3aS,4S,6R,6aR)-6-(6-chloro-5-cyano-4-(((R)-1-(4-fluorophenyl)ethyl)amino)-1H-pyrrolo[2,3-b]pyridin-1-yl)-2,2-dimethyltetrahydrofuro[3,4-d][1,3]dioxol-4-yl)methyl)sulfonyl)methyl)phosphonic acid: To a solution of diethyl (((((3aS,4S,6R,6aR)-6-(6-chloro-5-cyano-4-(((R)-1-(4-fluorophenyl)ethyl)amino)-1H-pyrrolo[2,3-b]pyridin-1-yl)-2,2-dimethyltetrahydrofuro[3,4-d][1,3]dioxol-4-yl)methyl)sulfonyl)methyl)phosphonate (40.2 mg, 0.06 mmol) in DCM (5 mL) was added 2,6-lutidine (0.57 mL, 4.96 mmol) and bromotrimethylsilane (0.65 mL, 4.96 mmol) at ambient temperature. The reaction mixture was stirred at this temperature for 18 hours. The reaction mixture was concentrated under reduced pressure and the residue was co-evaporated with methanol three times to give a light yellow solid. 5 mL of water and 5 mL of saturated potassium hydrogen sulfate were added. The mixture was stirred at ambient temperature for 5 minutes. The resulting solids were collected by filtration, washed with water and dried under air. The solids were dissolved in 80% aqueous formic acid (5 mL) and stirred at ambient temperature for 1 hour. The reaction mixture was then concentrated under reduced pressure and co-evaporated with 4:1 methanol/water (20 mL), repeated three times. The resulting solid was dissolved in methanol (10 mL) and ammonium hydroxide (5 mL) was added. The mixture was stirred at ambient temperature for 30 minutes. Solvent was removed under reduced pressure and the solids were suspended in methanol (20 mL). The suspension was stirred at ambient temperature for 10 minutes. The solids were collected by filtration and dried to give (((((2S,3S,4R,5R)-5-(6-chloro-5-cyano-4-(((R)-1-(4-fluorophenyl)ethyl)amino)-1H-pyrrolo[2,3-b]pyridin-1-yl)-3,4-dihydroxytetrahydrofuran-2-yl)methyl)sulfonyl)methyl)phosphonic acid as an off-white solid. LCMS (ESI)+m/z [M+H]629.
Step J: Preparation of (((((2S,3S,4R,5R)-5-(6-chloro-5-cyano-4-(((S)-1-(4-fluorophenyl)ethyl)amino)-1H-pyrrolo[2,3-b]pyridin-1-yl)-3,4-dihydroxytetrahydrofuran-2-yl)methyl)sulfonyl)methyl)phosphonic acid: A mixture of (((((3aS,4S,6R,6aR)-6-(6-chloro-5-cyano-4-(((S)-1-(4-fluorophenyl)ethyl)amino)-1H-pyrrolo[2,3-b]pyridin-1-yl)-2,2-dimethyltetrahydrofuro[3,4-d][1,3]dioxol-4-yl)methyl)sulfonyl)methyl)phosphonic acid (50.2 mg, 0.08 mmol) in 80% aqueous formic acid (2 mL) was stirred at 25° C. After 2 h, the solvent was removed under reduced pressure. The residue was purified by prep-HPLC to give (((((2S,3S,4R,5R)-5-(6-chloro-5-cyano-4-(((S)-1-(4-fluorophenyl)ethyl)amino)-1H-pyrrolo[2,3-b]pyridin-1-yl)-3,4-dihydroxytetrahydrofuran-2-yl)methyl)sulfonyl)methyl)phosphonic acid (16.5 mg, 0.024 mmol, 29% yield), isolated as a TFA-salt. LCMS ESI (+) m/z [M+H]+=589. 1H NMR (400 MHz, CD3OD, δ): 7.47-7.41 (m, 2H), 7.34 (d, 1H), 7.10-7.04 (t, 2H), 6.61 (d, 1H), 6.14 (d, 1H), 5.48 (dd, 1H) 4.76-4.34 (m, 1H), 4.41-4.39 (m, 1H), 4.25-4.22 (m, 1H), 4.03 (dd, 1H), 3.79-3.54 (m, 3H), 1.67 (d, 3H); 19F NMR (375 MHz, CD3OD, δ): −117.71; 31P NMR (162 MHz, CD3OD, δ): 8.20 (s).
Step A: Preparation of 4-chloro-5-cyano-1H-pyrrolo[2,3-b]pyridine 7-oxide: A suspension of 4-chloro-1H-Pyrrolo[2,3-b]pyridine-5-carbonitrile (10.0 g, 56.3 mmol) in ethyl acetate (150 mL) was added 3-chloroperbenzoic acid (18.9 g, 84.5 mmol) at ambient temperature. After addition, the reaction mixture was stirred at 52° C. (bath) for 3 hours. After cooling to ambient temperature, hexane (110 mL) was added and the mixture was stirred at ambient temperature for 10 minutes. Solid was collected by filtration, washed with MTBE and dried to give 4-chloro-7-oxo-1H-pyrrolo[2,3-b]pyridine-5-carbonitrile (8.2 g, 75%) as a solid. LCMS ESI (+) m/z 194 (M+H).
Step B: Preparation of 4,6-dichloro-1H-pyrrolo[2,3-b]pyridine-5-carbonitrile: A suspension of 4-chloro-7-oxo-1H-pyrrolo[2,3-b]pyridine-5-carbonitrile (8.2 g, 42.4 mmol) in NMP (80 mL) was added phosphorus (V) oxychloride (7.9 mL, 84.7 mmol) at 0° C. After addition, the reaction mixture was stirred at 0° C. for 1 hour. Ice-water (300 mL) was added and the mixture was stirred at ambient temperature for 30 minutes. Solid was collected by filtration, washed with water and dried to give 4,6-dichloro-1H-pyrrolo[2,3-b]pyridine-5-carbonitrile (9.0 g, 99%) as a pink solid. LCMS ESI (−) m/z 210 (M−H).
Step C: Preparation of 6-chloro-4-(cyclopentylamino)-1H-pyrrolo[2,3-b]pyridine-5-carbonitrile: A mixture of triethyl amine (11.7 mL, 84.4 mmol), cyclopentanamine (10.8 g, 126.6 mmol) and 4,6-dichloro-1H-pyrrolo[2,3-b]pyridine-5-carbonitrile (8.95 g, 42.2 mmol) in NMP (40 mL) was stirred at 100° C. for 2 hours. After cooling to ambient temperature, water (200 mL) was added and stirred at ambient temperature for 30 minutes. Solid was collected by filtration and washed with water and dried. The resulting solid was suspended in IPA (60 mL) and stirred at ambient temperature for 30 minutes. Solid was collected by filtration, washed with IPA (20 mL) and dried to give 6-chloro-4-(cyclopentylamino)-1H-pyrrolo[2,3-b]pyridine-5-carbonitrile (9.3 g, 85%) as a solid. LCMS ESI (+) m/z 261 (M+H).
Step D: Preparation of 6-chloro-4-(cyclopentylamino)-1-((3aR,4R,6R,6aR)-6-(hydroxymethyl)-2,2-dimethyltetrahydrofuro[3,4-d][1,3]dioxol-4-yl)-1H-pyrrolo[2,3-b]pyridine-5-carbonitrile: (3aR,6R,6aR)-6-[[tert-butyl(dimethyl)silyl]oxymethyl]-2,2-dimethyl-3a,4,6,6a-tetrahydrofuro[3,4-d][1,3]dioxol-4-ol (5.7 g, 18.7 mmol) and carbon tetrachloride (1.99 mL, 20.6 mmol) in toluene (50 mL) and cooled to −10° C. Tris(dimethylamino)phosphine (3.6 mL, 19.7 mmol) was added slowly at −10° C. After addition, the mixture was stirred at 0˜−10° C. for 1 hour. Water (50 mL) was added. The organic layer was separated, dried (sodium sulfate), filtered and concentrated under reduced pressure to give tert-butyl(((3aR,4R,6R,6aR)-6-chloro-2,2-dimethyltetrahydrofuro[3,4-d][1,3]dioxol-4-yl)methoxy)dimethylsilane. The residue obtained was dissolved in acetonitrile (10 mL) which was used directly in the next step. In a separate round bottom flask, 6-chloro-4-(cyclopentylamino)-1H-pyrrolo[2,3-b]pyridine-5-carbonitrile (2.44 g, 9.4 mmol) in acetonitrile (25 mL) was cooled to 0° C. and sodium hydride, 60% dispersion in mineral oil (0.77 g, 19.2 mmol) was added. After addition, the mixture was warmed to ambient temperature and stirred at ambient temperature for 1 hour. The ribose mixture prepared above was added at ambient temperature and the reaction mixture was stirred at ambient temperature for 20 hours. Ice-water (30 mL) and MTBE (30 mL) were added. The organic layer was separated, washed with brine, dried (sodium sulfate) and concentrated under reduced pressure. The residue obtained was dissolved in THF (10 mL) and tetrabutyl ammonium fluoride, 1.0 M in THF (21.5 mL, 21.5 mmol) was added and stirred at ambient temperature for 1 hour. Saturated sodium bicarbonate solution (20 mL) and ethyl acetate (20 mL) were added. The organic layer was separated, dried (sodium sulfate), filtered and concentrated under reduced pressure. The residue obtained was purified by flash chromatography on silica gel 5:1 DCM/ethyl acetate to give 1-[(3aR,4R,6R,6aR)-6-(hydroxymethyl)-2,2-dimethyl-3a,4,6,6a-tetrahydrofuro[3,4-d][1,3]dioxol-4-yl]-6-chloro-4-(cyclopentylamino)pyrrolo[2,3-b]pyridine-5-carbonitrile (2.27 g, 56%) as a solid. LCMS ESI (+) m/z 433 (M+H).
Step E: Preparation of diethyl (((((3aS,4S,6R,6aR)-6-(6-chloro-5-cyano-4-(cyclopentylamino)-1H-pyrrolo[2,3-b]pyridin-1-yl)-2,2-dimethyltetrahydrofuro[3,4-d][1,3 ]dioxol-4-yl)methyl)thio)methyl)phosphonate: 1-[(3aR,4R,6R,6aR)-6-(hydroxymethyl)-2,2-dimethyl-3a,4,6,6a-tetrahydrofuro[3,4-d][1,3]dioxol-4-yl]-6-chloro-4-(cyclopentylamino)pyrrolo[2,3-b]pyridine-5-carbonitrile (0.50 g, 1.2 mmol) and triethylamine (0.32 mL, 2.3 mmol) in dichloromethane (5.8 mL) was treated with methanesulfonyl chloride (0.18 mL, 2.3 mmol), then the mixture was stirred at ambient temperature for 2 hours. The reaction was quenched with saturated ammonium chloride solution. The aqueous separation was extracted with DCM (2×). The combined organic separations were washed with brine, then dried with MgSO4, filtered and concentrated to yield an orange oil. The oil was dissolved in DMF (8 mL), 2-((diethoxyphosphoryl)methyl)isothiouronium 4-methylbenzenesulfonate (2.1 g, 5.3 mmol) and 21% sodium ethoxide in ethanol (3.9 mL, 10.4 mmol) were added at ambient temperature. The reaction mixture was stirred at ambient temperature for overnight. The solution was quenched with water and partitioned with ethyl acetate. The aqueous separation was extracted with ethyl acetate (3×). The combined organic separations were washed with brine, dried with MgSO4, filtered and then concentrated. The residue obtained was purified by flash chromatography on silica gel, 0 to 50% (3:1 EtOAc:EtOH)/hexanes to give diethyl (((((3aS,4S,6R,6aR)-6-(6-chloro-5-cyano-4-(cyclopentylamino)-1H-pyrrolo[2,3-b]pyridin-1-yl)-2,2-dimethyltetrahydrofuro[3,4-d][1,3]dioxol-4-yl)methyl)thio)methyl)phosphonate (0.44 g, 64%) as an oil. LCMS ESI (+) m/z 599 (M+H).
Step F: Preparation of (((((3aS,4S,6R,6aR)-6-(6-chloro-5-cyano-4-(cyclopentylamino)-1H-pyrrolo[2,3-b]pyridin-1-yl)-2,2-dimethyltetrahydrofuro[3,4-d][1,3]dioxol-4-yl)methyl)thio)methyl)phosphonic acid: To a solution of diethyl (((((3aS,4S,6R,6aR)-6-(6-chloro-5-cyano-4-(cyclopentylamino)-1H-pyrrolo[2,3-b]pyridin-1-yl)-2,2-dimethyltetrahydrofuro[3,4-d][1,3]dioxol-4-yl)methyl)thio)methyl)phosphonate (9.5 g, 15.86 mmol) in dichloromethane (50 mL) was added 2,6-lutidine (12.9 mL, 111 mmol) and bromotrimethylsilane (14.7 mL, 111 mmol) at ambient temperature. The reaction mixture was stirred at this temperature for 18 hours. The reaction mixture was concentrated under reduced pressure. The residue was co-evaporated with methanol (3×) to give a light yellow solid. Saturated potassium hydrogen sulfate solution (30 mL) and ethyl acetate (50 mL) were added. The organic layer was separated, washed with 10% potassium hydrogen sulfate, dried (sodium sulfate), filtered and concentrated under reduced pressure to give (((((3aS,4S,6R,6aR)-6-(6-chloro-5-cyano-4-(cyclopentylamino)-1H-pyrrolo[2,3-b]pyridin-1-yl)-2,2-dimethyltetrahydrofuro[3,4-d][1,3]dioxol-4-yl)methyl)thio)methyl)phosphonic acid (8.4 g, 15 mmol, 98% yield) as a solid.
Step G: Preparation of (((((((3aS,4S,6R,6aR)-6-(6-chloro-5-cyano-4-(cyclopentylamino)-1H-pyrrolo[2,3-b]pyridin-1-yl)-2,2-dimethyltetrahydrofuro[3,4-d][1,3]dioxol-4-yl)methyl)thio)methyl)phosphoryl)bis(oxy))bis(methylene) bis(2-methylpropanoate): A mixture of Ag2O (443.87 mg, 1.92 mmol) and chloromethyl isobutyrate (0.25 mL, 1.92 mmol) in DMF (5 mL) was heated at 70° C. for 3 h. Both mono and bisalkylation products were observed. Additional chloromethyl isobutyrate (0.25 mL, 1.92 mmol) and Ag2O (443.87 mg, 1.92 mmol) were added and the mixture stirred at 70° C. for an additional 4 h. The reaction mixture was diluted with brine and EtOAc and filtered through celite. The organic layer was separated, dried over Na2SO4, filtered, and concentrated. The residue was purified by flash column chromatography with EtOAc/hexane (10% to 80%) to give (((((((3aS,4S,6R,6aR)-6-(6-chloro-5-cyano-4-(cyclopentylamino)-1H-pyrrolo[2,3-b]pyridin-1-yl)-2,2-dimethyltetrahydrofuro[3,4-d][1,3]dioxol-4-yl)methyl)thio)methyl)phosphoryl)bis(oxy))bis(methylene) bis(2-methylpropanoate) (100 mg, 0.16 mmol, 65% yield). LCMS ESI(+) m/z 743 (M+H).
Step H. Preparation of (((((((3aS,4S,6R,6aR)-6-(6-chloro-5-cyano-4-(cyclopentylamino)-1H-pyrrolo[2,3-b]pyridin-1-yl)-2,2-dimethyltetrahydrofuro[3,4-d][1,3]dioxol-4-yl)methyl)sulfonyl)methyl)phosphoryl)bis(oxy))bis(methylene) bis(2,2-dimethylpropanoate): To a solution of (((((((3aS,4S,6R,6aR)-6-(6-chloro-5-cyano-4-(cyclopentylamino)-1H-pyrrolo[2,3-b]pyridin-1-yl)-2,2-dimethyltetrahydrofuro[3,4-d][1,3]dioxol-4-yl)methyl)thio)methyl)phosphoryl)bis(oxy))bis(methylene) bis(2-methylpropanoate) (100 mg, 0.13 mmol) in a mixture of acetonitrile (9 mL)/water (3 mL) was added Oxone® (124.35 mg, 0.4 mmol). The reaction mixture was stirred at room temperature for 6 h, diluted with water, extracted with EtOAc. The organic layer was dried over Na2SO4, filtered, and concentrated. The residue was purified by flash column chromatography with CH3CN/water (20% to 90%) to give (((((((3aS,4S,6R,6aR)-6-(6-chloro-5-cyano-4-(cyclopentylamino)-1H-pyrrolo[2,3-b]pyridin-1-yl)-2,2-dimethyltetrahydrofuro[3,4-d][1,3]dioxol-4-yl)methyl)sulfonyl)methyl)phosphoryl)bis(oxy))bis(methylene) bis(2-methylpropanoate) The yield was not determined at this time and the entire residue was used in the next step. LCMS ESI(+) m/z 735.
Step I. Preparation of (((((((2S,3S,4R,5R)-5-(6-chloro-5-cyano-4-(cyclopentylamino)-1H-pyrrolo[2,3-b]pyridin-1-yl)-3,4-di hydroxytetrahydrofuran-2-yl)methyl)sulfonyl)methyl)phosphoryl)bis(oxy))bis(methylene) bis(2-methylpropanoate): A mixture of (((((((3aS,4S,6R,6aR)-6-(6-chloro-5-cyano-4-(cyclopentylamino)-1H-pyrrolo[2,3-b]pyridin-1-yl)-2,2-dimethyltetrahydrofuro[3,4-d][1,3]dioxol-4-yl)methyl)sulfonyl)methyl)phosphoryl)bis(oxy))bis(methylene) bis(2-methylpropanoate) in 80% aqueous formic acid (5 mL) was stirred at room temperature for 2 h. After concentrating with a stream of nitrogen, the residue was purified by prep HPLC with water/CH3CN (5 to 95% with 0.1% TFA added) to give (((((((2S,3S,4R,5R)-5-(6-chloro-5-cyano-4-(cyclopentylamino)-1H-pyrrolo[2,3-b]pyridin-1-yl)-3,4-di hydroxytetrahydrofuran-2-yl)methyl)sulfonyl)methyl)phosphoryl)bis(oxy))bis(methylene) bis(2-methylpropanoate) (17.9 mg, 0.024 mmol, 18% yield). LCMS ESI(+) m/z 735. 1H NMR (400 MHz, CD3OD, δ): 7.41 (d, 1H), 6.85 (d, 1H), 6.21 (d, 1H), 5.68-5.65 (m, 1H), 5.63 (s, 1H), 5.46 (dd, 1H), 5.42-5.37 (m, 1H), 4.64-4.54 (m, 2H), 4.46-4.42 (m, 2H), 4.31 (t, 1H), 4.10 (m, 2H), 3.53 (br d, 1H), 2.58 (septet, 1H), 2.47 (septet, 1H), 2.20-2.08 (m, 2H), 1.86-1.77 (m, 2H), 1.76-1.65 (m, 4H), 1.14 (dd, 6H), 1.09 (dd, 6H).
Step A: Preparation of 4-chloro-5-cyano-1H-pyrrolo[2,3-b]pyridine 7-oxide: A suspension of 4-chloro-1H-Pyrrolo[2,3-b]pyridine-5-carbonitrile (10.0 g, 56.3 mmol) in ethyl acetate (150 mL) was added 3-chloroperbenzoic acid (18.9 g, 84.5 mmol) at ambient temperature. After addition, the reaction mixture was stirred at 52° C. (bath) for 3 hours. After cooling to ambient temperature, hexane (110 mL) was added and the mixture was stirred at ambient temperature for 10 minutes. Solid was collected by filtration, washed with MTBE and dried to give 4-chloro-7-oxo-1H-pyrrolo[2,3-b]pyridine-5-carbonitrile (8.2 g, 75%) as a solid. LCMS ESI (+) m/z 194 (M+H).
Step B: Preparation of 4,6-dichloro-1H-pyrrolo[2,3-b]pyridine-5-carbonitrile: A suspension of 4-chloro-7-oxo-1H-pyrrolo[2,3-b]pyridine-5-carbonitrile (8.2 g, 42.4 mmol) in NMP (80 mL) was added phosphorus (V) oxychloride (7.9 mL, 84.7 mmol) at 0° C. After addition, the reaction mixture was stirred at 0° C. for 1 hour. Ice-water (300 mL) was added and the mixture was stirred at ambient temperature for 30 minutes. Solid was collected by filtration, washed with water and dried to give 4,6-dichloro-1H-pyrrolo[2,3-b]pyridine-5-carbonitrile (9.0 g, 99%) as a pink solid. LCMS ESI (−) m/z 210 (M−H).
Step C: Preparation of 4,6-dichloro-1-((3aR,4R,6R,6aR)-6-(hydroxymethyl)-2,2-dimethyltetrahydrofuro[3,4-d][1,3]dioxol-4-yl)-1H-pyrrolo[2,3-b]pyridine-5-carbonitrile: In a dry 100 mL flask, CCl4 (6.82 mL, 70.51 mmol) and (3aR,6R,6aR)-6-(((tert-butyldimethylsilyl)oxy)methyl)-2,2-dimethyltetrahydrofuro[3,4-d][1,3]dioxol-4-ol (20.57 g, 67.58 mmol) was dissolved in toluene (100 mL) and cooled in a −10° C. bath. Tris(dimethylamino)phosphine (12.82 mL, 70.51 mmol) was added slowly at −10° C. After addition, the mixture was stirred with warming to 0° C. over 1 hour. Water (50 mL) and MTBE (20 mL) were added. The organic layer was separated, dried (sodium sulfate), filtered and concentrated under reduced pressure. The residue obtained was dissolved in acetonitrile (20 mL) which was used directly in the next step. In a separate flask, 4,6-dichloro-1H-pyrrolo[2,3-b]pyridine-5-carbonitrile (6.23 g, 29.38 mmol) in acetonitrile (80.387 mL) was added sodium hydride, 60% dispersion in mineral oil (1.76 g, 44.07 mmol) at ambient temperature. The mixture was stirred at ambient temperature for 2 h. The ribose mixture prepared above was added at ambient temperature, and the reaction mixture was stirred at ambient temperature for 20 hours. Ice-water (100 mL) was added, then MTBE (200 mL) was added. The organic layer was separated, washed with brine, dried (sodium sulfate) and concentrated under reduced pressure. The residue obtained was dissolved in THF (10 mL) and Et3N3HF (9.58 mL, 58.76 mmol) was added and then stirred at ambient temperature for 5 hours. Saturated sodium bicarbonate solution (20 mL) and ethyl acetate (50 mL) were added. The organic layer was separated, dried (sodium sulfate), filtered and concentrated under reduced pressure. The residue obtained was purified by flash chromatography on silica gel 1:1 hexane/ethyl acetate to give 4,6-dichloro-1-((3aR,4R,6R,6aR)-6-(hydroxymethyl)-2,2-dimethyltetrahydrofuro[3,4-d][1,3]dioxol-4-yl)-1H-pyrrolo[2,3-b]pyridine-5-carbonitrile (7.92 g, 20.614 mmol, 70% yield) as white solid. LCMS ESI(+) m/z 385 (M+H).
Step D. Preparation of 6-chloro-4-(((1r,3R)-3-fluorocyclobutyl)amino)-1-((3aR,4R,6R,6aR)-6-(hydroxymethyl)-2,2-dimethyltetrahydrofuro[3,4-d][1,3]dioxol-4-yl)-1H-pyrrolo[2,3-b]pyridine-5-carbonitrile: A mixture of 4,6-dichloro-1-((3aR,4R,6R,6aR)-6-(hydroxymethyl)-2,2-dimethyltetrahydrofuro[3,4-d][1,3]dioxol-4-yl)-1H-pyrrolo[2,3-b]pyridine-5-carbonitrile (1.8 g, 4.68 mmol), (1r,3r)-3-fluorocyclobutan-1-amine hydrochloride (0.72 g, 5.73 mmol) and triethylamine (1.42 g, 14.04 mmol) in sec-butanol (25 mL) was stirred at 100° C. for 4 days. The mixture was concentrated to dryness. The crude was then purified by PTLC (50% EtOAc in hexane) to give 6-chloro-4-(((1r,3R)-3-fluorocyclobutyl)amino)-1-((3aR,4R,6R,6aR)-6-(hydroxymethyl)-2,2-dimethyltetrahydrofuro[3,4-d][1,3]dioxol-4-yl)-1H-pyrrolo[2,3-b]pyridine-5-carbonitrile (1250 mg, 2.86 mmol, 61% yield). LCMS ESI(+) m/z 437 (M+H).
Step E. Preparation of ((3aR,4R,6R,6aR)-6-(6-chloro-5-cyano-4-4(1r,3R)-3-fluorocyclobutyl)amino)-1H-pyrrolo[2,3-b]pyridin-1-yl)-2,2-dimethyltetrahydrofuro[3,4-d][1,3]dioxol-4-yl)methyl methanesulfonate: To a solution of 6-chloro-4-(((1R,3R)-3-fluorocyclobutyl)amino)-1-((3aR,4R,6R,6aR)-6-(hydroxymethyl)-2,2-dimethyltetrahydrofuro[3,4-d][1,3]dioxol-4-yl)-1H-pyrrolo[2,3-b]pyridine-5-carbonitrile (1250 mg, 2.86 mmol) in pyridine (20 mL) was added methanesulfonyl chloride (655 mg, 5.72 mmol) at 0° C. After 2 hrs, the solvent was removed under reduced pressure and the residue was partitioned between H2O and EtOAc. The organic layer was dried over Na2SO4, filtered, concentrated and purified by column chromatography over silica gel (petroleum ether:EtOAc=1:1) to give ((3aR,4R,6R,6aR)-6-(6-chloro-5-cyano-4-(((1r,3R)-3-fluorocyclobutyl)amino)-1H-pyrrolo[2,3-b]pyridin-1-yl)-2,2-dimethyltetrahydrofuro[3,4-d][1,3]dioxol-4-yl)methyl methanesulfonate (1.21 mg, 2.35 mmol, 82% yield). LCMS ESI(+) m/z 515 (M+H).
Step F. Preparation of S-(((3aS,4S,6R,6aR)-6-(6-chloro-5-cyano-4-(((1r,3R)-3-fluorocyclobutyl)amino)-1H-pyrrolo[2,3-b]pyridin-1-yl)-2,2-dimethyltetrahydrofuro[3,4-d][1,3]dioxol-4-yl)methyl) ethanethioate: To a solution of ((3aR,4R,6R,6aR)-6-(6-chloro-5-cyano-4-(((1r,3R)-3-fluorocyclobutyl)amino)-1H-pyrrolo[2,3-b]pyridin-1-yl)-2,2-dimethyltetrahydrofuro[3,4-d][1,3]dioxol-4-yl)methyl methanesulfonate (1210 mg, 2.35 mmol) in DMF (20 mL) was added potassium ethanethioate (479.4 mg, 7.05 mmol) and tetrabutylammonium bromide (227.7 mg, 0.71 mmol) under N2. The mixture was stirred at 40° C. After 16 hrs, the mixture was partitioned between H2O and EtOAc. The organic layer was dried over Na2SO4, filtered and concentrated to give S-(((3aS,4S,6R,6aR)-6-(6-chloro-5-cyano-4-(((1R,3R)-3-fluorocyclobutyl)amino)-1H-pyrrolo[2,3-b]pyridin-1-yl)-2,2-dimethyltetrahydrofuro[3,4-d][1,3]dioxol-4-yl)methyl) ethanethioate (992 mg, 2 mmol, 85% yield). LCMS ESI(+) m/z 495 (M+H).
Step G. Preparation of diethyl (((((3aS,4S,6R,6aR)-6-(6-chloro-5-cyano-4-4(1r,3R)-3-fluorocyclobutyl)amino)-1H-pyrrolo[2,3-b]pyridin-1-yl)-2,2-dimethyltetrahydrofuro[3,4-d][1,3]dioxol-4-yl)methyl)thio)methyl)phosphonate: To a solution of S-(((3aS,4S,6R,6aR)-6-(6-chloro-5-cyano-4-(((1R,3R)-3-fluorocyclobutyl)amino)-1H-pyrrolo[2,3-b]pyridin-1-yl)-2,2-dimethyltetrahydrofuro[3,4-d][1,3]dioxol-4-yl)methyl) ethanethioate (992 mg, 2.00 mmol) in ethanol (40 mL) was added sodium ethoxide solution, 21% in ethanol (408 mg, 6 mmol) under N2. The mixture was stirred at 25° C. After 15 minutes, (diethoxyphosphoryl)methyl 4-methylbenzenesulfonate (773 mg, 2.4 mmol) was added and stirred at 50° C. After 1 hr, the mixture was diluted with EtOAc, and quenched with saturated NaCl solution. The organic layer was dried over Na2SO4, filtered, concentrated and finally purified by HPLC to give diethyl (((((3aS,4S,6R,6aR)-6-(6-chloro-5-cyano-4-(((1r,3R)-3-fluorocyclobutyl)amino)-1H-pyrrolo[2,3-b]pyridin-1-yl)-2,2-dimethyltetrahydrofuro[3,4-d][1,3]dioxol-4-yl)methyl)thio)methyl)phosphonate (595 mg, 0.83 mmol, 41% yield). LCMS ESI(+) m/z 603 (M+H).
Step H. Preparation of diethyl (((((3aS,4S,6R,6aR)-6-(6-chloro-5-cyano-44(1R,3R)-3-fluorocyclobutyl)amino)-1H-pyrrolo[2,3-b]pyridin-1-yl)-2,2-dimethyltetrahydrofuro[3,4-d][1,3]dioxol-4-yl)methyl)sulfonyl)methyl)phosphonate: To a solution of diethyl (((((3aS,4S,6R,6aR)-6-(6-chloro-5-cyano-4-(((1r,3R)-3-fluorocyclobutyl)amino)-1H-pyrrolo[2,3-b]pyridin-1-yl)-2,2-dimethyltetrahydrofuro[3,4-d][1,3]dioxol-4-yl)methyl)thio)methyl)phosphonate (0.3 g, 0.42 mmol) in MTBE (2 mL) was added 3-chloroperbenzoic acid (0.22 g, 0.88 mmol) at 0° C. and stirred at this temperature for 2 hours. 10% (w/v) aqueous sodium sulfite (5 mL) and MTBE (10 mL) were added. The organic layer was separated, washed with brine, dried (sodium sulfate), filtered and concentrated under reduced pressure. The residue obtained was purified by flash chromatography on silica gel, 1:1 hexane/ethyl acetate to give diethyl (((((3aS,4S,6R,6aR)-6-(6-chloro-5-cyano-4-(((1r,3R)-3-fluorocyclobutyl)amino)-1H-pyrrolo[2,3-b]pyridin-1-yl)-2,2-dimethyltetrahydrofuro[3,4-d][1,3]dioxol-4-yl)methyl)sulfonyl)methyl)phosphonate (0.26 g, 0.41 mmol, 98% yield) as a solid. LCMS ESI(+) m/z 635 (M+H).
Step I. Preparation of (((((2S,3S,4R,5R)-5-(6-chloro-5-cyano-4-(((1R,3R)-3-fluorocyclobutyl)amino)-1H-pyrrolo[2,3-b]pyridin-1-yl)-3,4-dihydroxytetrahydrofuran-2-yl)methyl)sulfonyl)methyl)phosphonic acid: To a solution of diethyl (((((3aS,4S,6R,6aR)-6-(6-chloro-5-cyano-4-(((1r,3R)-3-fluorocyclobutyl)amino)-1H-pyrrolo[2,3-b]pyridin-1-yl)-2,2-dimethyltetrahydrofuro[3,4-d][1,3]dioxol-4-yl)methyl)sulfonyl)methyl)phosphonate (0.26 g, 0.41 mmol) in dichloromethane (4 mL) was added 2,6-lutidine (0.33 mL, 2.88 mmol) and bromotrimethylsilane (0.38 mL, 2.88 mmol) at ambient temperature. The reaction mixture was stirred at this temperature for 18 hours. The reaction mixture was concentrated under reduced pressure. The residue was co-evaporated with methanol (3×) to give a light yellow solid. Saturated potassium hydrogen sulfate solution (30 mL) and ethyl acetate (50 mL) were added. The organic layer was separated, washed with 10% potassium hydrogen sulfate, dried (sodium sulfate), filtered and concentrated under reduced pressure. The residue obtained was dissolved in 80% (v/v) formic acid in water (20 mL) and stirred at ambient temperature for 3 hours. The solvent was removed under reduced pressure. The residue was co-evaporated with methanol (3×) and dried under vacuum to give a solid. It was dissolved in methanol (40 mL) and ammonium hydroxide solution (5 mL) was added. The mixture was stirred at ambient temperature for 30 minutes. Solvent was removed under reduced pressure. The residue obtained was suspended in acetonitrile (20 mL) and stirred at ambient temperature for 10 minutes. Solids were collected by filtration and dried to give (((((2S,3S,4R,5R)-5-(6-chloro-5-cyano-4-(((1r,3R)-3-fluorocyclobutyl)amino)-1H-pyrrolo[2,3-b]pyridin-1-yl)-3,4-dihydroxytetrahydrofuran-2-yl)methyl)sulfonyl)methyl)phosphonic acid (0.19 g, 0.35 mmol, 86% yield) as the bis-ammonium salt. 1H NMR (400 MHz, CD3OD, δ): 7.15 (d, 1H), 6.45 (d, 1H), 5.97 (d, 1H), 5.26-5.09 (m, 1H), 4.48-4.40 (m, 3H), 4.24 (t, 1H), 3.75-3.74 (m, 2H), 3.51 (s, 1H), 3.46 (s, 1H), 2.67-2.55 (m, 2H), 2.44-2.34 (m, 2H); 19F NMR (375 MHz, CD3OD, δ): −174.13-174.38 (m); 31P NMR (162 MHz, CD3OD, δ): 3.24.
Step A: Preparation of 4-chloro-5-cyano-1H-pyrrolo[2,3-b]pyridine 7-oxide: A suspension of 4-chloro-1H-Pyrrolo[2,3-b]pyridine-5-carbonitrile (10.0 g, 56.3 mmol) in ethyl acetate (150 mL) was added 3-chloroperbenzoic acid (18.9 g, 84.5 mmol) at ambient temperature. After addition, the reaction mixture was stirred at 52° C. (bath) for 3 hours. After cooling to ambient temperature, hexane (110 mL) was added and the mixture was stirred at ambient temperature for 10 minutes. Solid was collected by filtration, washed with MTBE and dried to give 4-chloro-7-oxo-1H-pyrrolo[2,3-b]pyridine-5-carbonitrile (8.2 g, 75%) as a solid. LCMS ESI (+) m/z 194 (M+H).
Step B: Preparation of 4,6-dichloro-1H-pyrrolo[2,3-b]pyridine-5-carbonitrile: A suspension of 4-chloro-7-oxo-1H-pyrrolo[2,3-b]pyridine-5-carbonitrile (8.2 g, 42.4 mmol) in NMP (80 mL) was added phosphorus (V) oxychloride (7.9 mL, 84.7 mmol) at 0° C. After addition, the reaction mixture was stirred at 0° C. for 1 hour. Ice-water (300 mL) was added and the mixture was stirred at ambient temperature for 30 minutes. Solid was collected by filtration, washed with water and dried to give 4,6-dichloro-1H-pyrrolo[2,3-b]pyridine-5-carbonitrile (9.0 g, 99%) as a pink solid. LCMS ESI (−) m/z 210 (M−H).
Step C: Preparation of 4,6-dichloro-1-((3aR,4R,6R,6aR)-6-(hydroxymethyl)-2,2-dimethyltetrahydrofuro[3,4-d][1,3]dioxol-4-yl)-1H-pyrrolo[2,3-b]pyridine-5-carbonitrile: In a dry 100 mL flask, CCl4 (6.82 mL, 70.5 mmol) and (3aR,6R,6aR)-6-(((tert-butyldimethylsilyl)oxy)methyl)-2,2-dimethyltetrahydrofuro[3,4-d][1,3]dioxol-4-ol (20.57 g, 67.58 mmol) was dissolved in toluene (100 mL) and cooled in a −10° C. bath. Tris(dimethylamino)phosphine (12.8 mL, 70.5 mmol) was added slowly at −10° C. After addition, the mixture was stirred with warming to 0° C. over 1 hour. Water (50 mL) and MTBE (20 mL) were added. The organic layer was separated, dried (sodium sulfate), filtered and concentrated under reduced pressure. The residue obtained was dissolved in acetonitrile (20 mL) which was used directly in the next step.
In a separate flask, 4,6-dichloro-1H-pyrrolo[2,3-b]pyridine-5-carbonitrile (6.23 g, 29.4 mmol) in acetonitrile (80 mL) was added sodium hydride, 60% dispersion in mineral oil (1.76 g, 44 mmol) at ambient temperature. The mixture was stirred at ambient temperature for 2 h. The ribose mixture prepared above was added at ambient temperature, and the reaction mixture was stirred at ambient temperature for 20 hours. Ice-water (100 mL) was added, then MTBE (200 mL) was added. The organic layer was separated, washed with brine, dried (sodium sulfate) and concentrated under reduced pressure. The residue obtained was dissolved in THF (10 mL) and Et3N.3HF (9.58 mL, 58.76 mmol) was added and then stirred at ambient temperature for 5 hours. Saturated sodium bicarbonate solution (20 mL) and ethyl acetate (50 mL) were added. The organic layer was separated, dried (sodium sulfate), filtered and concentrated under reduced pressure. The residue obtained was purified by flash chromatography on silica gel 1:1 hexane/ethyl acetate to give 4,6-dichloro-1-((3aR,4R,6R,6aR)-6-(hydroxymethyl)-2,2-dimethyltetrahydrofuro[3,4-d][1,3]dioxol-4-yl)-1H-pyrrolo[2,3-b]pyridine-5-carbonitrile (7.92 g, 20.6 mmol, 70% yield) as white solid. LCMS ESI(+) m/z [M+H]+=385.
Step D: Preparation of 6-chloro-4-(3,3-difluoropyrrolidin-1-yl)-1-((3aR,4R,6R,6aR)-6-(hydroxymethyl)-2,2-dimethyltetrahydrofuro[3,4-d][1,3]dioxol-4-yl)-1H-pyrrolo[2,3-b]pyridine-5-carbonitrile: 4,6-dichloro-1-((3aR,4R,6R,6aR)-6-(hydroxymethyl)-2,2-dimethyltetrahydrofuro[3,4-d][1,3]dioxol-4-yl)-1H-pyrrolo[2,3-b]pyridine-5-carbonitrile (372 mg, 0.97 mmol), 3,3-difluoropyrrolidine hydrochloride (278 mg, 1.94 mmol) and triethylamine (0.4 mL, 2.9 mmol) were dissolved in NMP (2.4 mL) and warmed to 100° C. After 2 hours the solution was cooled to RT and then partitioned with EtOAc and water. The aqueous separation was extracted with EtOAc (2×). The combined EtOAc separations were washed with brine, dried with MgSO4, filtered and concentrated. The residue was purified by column chromatography, 0 to 50% (3:1 EtOAc:EtOH)/hexanes, to give 6-chloro-4-(3,3-difluoropyrrolidin-1-yl)-1-((3aR,4R,6R,6aR)-6-(hydroxymethyl)-2,2-dimethyltetrahydrofuro[3,4-d][1,3]dioxol-4-yl)-1H-pyrrolo[2,3-b]pyridine-5-carbonitrile (380 mg, 0.84 mmol, 86% yield). LCMS ESI(+) m/z [M+H]+=455.
Step E. Preparation of ((3aR,4R,6R,6aR)-6-(6-chloro-5-cyano-4-(3,3-difluoropyrrolidin-1-yl)-1H-pyrrolo[2,3-b]pyridin-1-yl)-2,2-dimethyltetrahydrofuro[3,4-d][1,3]dioxol-4-yl)methyl methanesulfonate: To a solution of 6-chloro-4-(3,3-difluoropyrrolidin-1-yl)-1-((3 aR,4R,6R,6aR)-6-(hydroxymethyl)-2,2-dimethyltetrahydrofuro[3,4-d][1,3]dioxol-4-yl)-1H-pyrrolo[2,3-b]pyridine-5-carbonitrile (120 mg, 0.26 mmol) in pyridine (3 mL) was added methanesulfonyl chloride (45 mg, 0.4 mmol) at 0° C. The reaction mixture was stirred at 0° C. for 2 hours. Water and MTBE were added. The organic layer was separated, washed with brine, dried (sodium sulfate), filtered and concentrated under reduced pressure, the residue was purified by PTLC to give ((3aR,4R,6R,6aR)-6-(6-chloro-5-cyano-4-(3,3-difluoropyrrolidin-1-yl)-1H-pyrrolo[2,3-b]pyridin-1-yl)-2,2-dimethyltetrahydrofuro[3,4-d][1,3]dioxol-4-yl)methyl methanesulfonate (120 mg, 0.23 mmol, 85% yield).
Step F. Preparation of diethyl (((((3aS,4S,6R,6aR)-6-(6-chloro-5-cyano-4-(3,3-difluoropyrrolidin-1-yl)-1H-pyrrolo[2,3-b]pyridin-1-yl)-2,2-dimethyltetrahydrofuro[3,4-d][1,3]dioxol-4-yl)methyl)thio)methyl)phosphonate: To a suspension of NaOEt (55 mg, 0.8 mmol) in degassed DMF (4 mL) was added (diethoxyphosphoryl)methyl 4-methylbenzenesulfonate (162 mg, 0.4 mmol), and the resulting mixture was stirred at room temperature for 30 minutes. ((3aR,4R,6R,6aR)-6-(6-chloro-5-cyano-4-(3,3-difluoropyrrolidin-1-yl)-1H-pyrrolo[2,3-b]pyridin-1-yl)-2,2-dimethyltetrahydrofuro[3,4-d][1,3]dioxol-4-yl)methyl methanesulfonate (144 mg, 0.27 mmol) in DMF (1 mL) was added subsequently, and the mixture was stirred at rt for 1 h. The reaction mixture was diluted with EtOAc, washed with brine twice, dried over anhydrous Na2SO4, concentrated and purified by PTLC to give the product diethyl (((((3aS,4S,6R,6aR)-6-(6-chloro-5-cyano-4-(3,3-difluoropyrrolidin-1-yl)-1H-pyrrolo[2,3-b]pyridin-1-yl)-2,2-dimethyltetrahydrofuro[3,4-d][1,3]dioxol-4-yl)methyl)thio)methyl)phosphonate (90 mg, 0.14 mmol, 54% yield).
Step G. Preparation of diethyl (((((3aS,4S,6R,6aR)-6-(6-chloro-5-cyano-4-(((R)-1-(4-fluorophenyl)ethyl)amino)-1H-pyrrolo[2,3-b]pyridin-1-yl)-2,2-dimethyltetrahydrofuro[3,4-d][1,3]dioxol-4-yl)methyl)sulfonyl)methyl)phosphonate: To a solution of diethyl (((((3aS,4S,6R,6aR)-6-(6-chloro-5-cyano-4-(3,3-difluoropyrrolidin-1-yl)-1H-pyrrolo[2,3-b]pyridin-1-yl)-2,2-dimethyltetrahydrofuro[3,4-d][1,3]dioxol-4-yl)methyl)thio)methyl)phosphonate (90 mg, 0.14 mmol) in acetonitrile (2 mL) and water (2 mL) was added Oxone® (268 mg, 0.43 mmol) at ambient temperature. The mixture was stirred at ambient temperature for 4 hours. Ethyl acetate (20 mL) and water (20 mL) were added. The organic layer was separated, washed with water, dried (sodium sulfate), filtered and concentrated under reduced pressure. The residue obtained was purified by PTLC (EtOAc:petroleum ether=1:1) to give diethyl (((((3aS,4S,6R,6aR)-6-(6-chloro-5-cyano-4-(((R)-1-(4-fluorophenyl)ethyl)amino)-1H-pyrrolo[2,3-b]pyridin-1-yl)-2,2-dimethyltetrahydrofuro[3,4-d][1,3]dioxol-4-yl)methyl)sulfonyl)methyl)phosphonate (38 mg, 0.058 mmol, 40% yield).
Step H. Preparation of (((((3aS,4S,6R,6aR)-6-(6-chloro-5-cyano-4-(((R)-1-(4-fluorophenyl)ethyl)amino)-1H-pyrrolo[2,3-b]pyridin-1-yl)-2,2-dimethyltetrahydrofuro[3,4-d][1,3]dioxol-4-yl)methyl)sulfonyl)methyl)phosphonic acid: To a mixture of give diethyl (((((3aS,4S,6R,6aR)-6-(6-chloro-5-cyano-4-(((R)-1-(4-fluorophenyl)ethyl)amino)-1H-pyrrolo[2,3-b]pyridin-1-yl)-2,2-dimethyltetrahydrofuro[3,4-d][1,3]dioxol-4-yl)methyl)sulfonyl)methyl)phosphonate (38 mg, 0.06 mmol) in dichloromethane (4 mL) was added 2,6-lutidine (125 mg, 1.16 mmol) and bromotrimethylsilane (178 mg, 1.16 mmol). The reaction mixture was stirred at 20° C. overnight. The reaction mixture was concentrated under reduced pressure. The residue was co-evaporated with acetonitrile twice to give the crude product (((((3aS,4S,6R,6aR)-6-(6-chloro-5-cyano-4-(((R)-1-(4-fluorophenyl)ethyl)amino)-1H-pyrrolo[2,3-b]pyridin-1-yl)-2,2-dimethyltetrahydrofuro[3,4-d][1,3]dioxol-4-yl)methyl)sulfonyl)methyl)phosphonic acid (28 mg, 0.047 mmol, 81% yield).
Step I. Preparation of (((((2S,3S,4R,5R)-5-(6-chloro-5-cyano-4-(((R)-1-(4-fluorophenyl)ethyl)amino)-1H-pyrrolo[2,3-b]pyridin-1-yl)-3,4-dihydroxytetrahydrofuran-2-yl)methyl)sulfonyl)methyl)phosphonic acid: To a solution of (((((3aS,4S,6R,6aR)-6-(6-chloro-5-cyano-4-(((R)-1-(4-fluorophenyl)ethyl)amino)-1H-pyrrolo[2,3-b]pyridin-1-yl)-2,2-dimethyltetrahydrofuro[3,4-d][1,3]dioxol-4-yl)methyl)sulfonyl)methyl)phosphonic acid (18 mg, 0.03 mmol) in 80% aqueous formic acid (3 mL) was stirred at 25° C. for 2 h. The mixture was concentrated in vacuum at 25° C. and purified by Prep-HPLC to give (((((2S,3S,4R,5R)-5-(6-chloro-5-cyano-4-(((R)-1-(4-fluorophenyl)ethyl)amino)-1H-pyrrolo[2,3-b]pyridin-1-yl)-3,4-dihydroxytetrahydrofuran-2-yl)methyl)sulfonyl)methyl)phosphonic acid (18 mg, 0.027 mmol, 89% yield) isolated as the trifluoroacetic acid salt. LCMS ESI(+) m/z [M+H]+=557. 1H NMR (400 MHz, CD3OD, δ): 7.44 (d, 1H), 6.88 (d, 1H), 6.20 (d, 1H), 4.47-4.39 (m, 4H), 4.33-4.27 (m, 3H), 4.05 (dd, 1H), 3.81-3.56 (m, 3H), 2.62-2.52 (m, 2H); 19F NMR (375 MHz, CD3OD, δ): −106.01-106.08 (m); 31P NMR (162 MHz, CD3OD, δ): 8.53 (s).
Step A: Preparation of 4-chloro-5-cyano-1H-pyrrolo[2,3-b]pyridine 7-oxide: A suspension of 4-chloro-1H-Pyrrolo[2,3-b]pyridine-5-carbonitrile (10.0 g, 56.3 mmol) in ethyl acetate (150 mL) was added 3-chloroperbenzoic acid (18.9 g, 84.5 mmol) at ambient temperature. After addition, the reaction mixture was stirred at 52° C. (bath) for 3 hours. After cooling to ambient temperature, hexane (110 mL) was added and the mixture was stirred at ambient temperature for 10 minutes. Solid was collected by filtration, washed with MTBE and dried to give 4-chloro-7-oxo-1H-pyrrolo[2,3-b]pyridine-5-carbonitrile (8.2 g, 75%) as a solid. LCMS ESI (+) m/z 194 (M+H).
Step B: Preparation of 4,6-dichloro-1H-pyrrolo[2,3-b]pyridine-5-carbonitrile: A suspension of 4-chloro-7-oxo-1H-pyrrolo[2,3-b]pyridine-5-carbonitrile (8.2 g, 42.4 mmol) in NMP (80 mL) was added phosphorus (V) oxychloride (7.9 mL, 84.7 mmol) at 0° C. After addition, the reaction mixture was stirred at 0° C. for 1 hour. Ice-water (300 mL) was added and the mixture was stirred at ambient temperature for 30 minutes. Solid was collected by filtration, washed with water and dried to give 4,6-dichloro-1H-pyrrolo[2,3-b]pyridine-5-carbonitrile (9.0 g, 99%) as a pink solid. LCMS ESI (−) m/z 210 (M−H).
Step C: Preparation of 4,6-dichloro-1-((3aR,4R,6R,6aR)-6-(hydroxymethyl)-2,2-dimethyltetrahydrofuro[3,4-d][1,3]dioxol-4-yl)-1H-pyrrolo[2,3-b]pyridine-5-carbonitrile: In a dry 100 mL flask, CCl4 (6.82 mL, 70.51 mmol) and (3aR,6R,6aR)-6-(((tert-butyldimethylsilyl)oxy)methyl)-2,2-dimethyltetrahydrofuro[3,4-d][1,3]dioxol-4-ol (20.57 g, 67.58 mmol) was dissolved in toluene (100 mL) and cooled in a −10° C. bath. Tris(dimethylamino)phosphine (12.82 mL, 70.5 mmol) was added slowly at −10° C. After addition, the mixture was stirred with warming to 0° C. over 1 hour. Water (50 mL) and MTBE (20 mL) were added. The organic layer was separated, dried (sodium sulfate), filtered and concentrated under reduced pressure. The residue obtained was dissolved in acetonitrile (20 mL) which was used directly in the next step.
In a separate flask, 4,6-dichloro-1H-pyrrolo[2,3-b]pyridine-5-carbonitrile (6.23 g, 29.4 mmol) in acetonitrile (80 mL) was added sodium hydride, 60% dispersion in mineral oil (1.76 g, 44 mmol) at ambient temperature. The mixture was stirred at ambient temperature for 2 h. The ribose mixture prepared above was added at ambient temperature, and the reaction mixture was stirred at ambient temperature for 20 hours. Ice-water (100 mL) was added, then MTBE (200 mL) was added. The organic layer was separated, washed with brine, dried (sodium sulfate) and concentrated under reduced pressure. The residue obtained was dissolved in THF (10 mL) and Et3N.3HF (9.58 mL, 58.8 mmol) was added and then stirred at ambient temperature for 5 hours. Saturated sodium bicarbonate solution (20 mL) and ethyl acetate (50 mL) were added. The organic layer was separated, dried (sodium sulfate), filtered and concentrated under reduced pressure. The residue obtained was purified by flash chromatography on silica gel 1:1 hexane/ethyl acetate to give 4,6-dichloro-1-((3aR,4R,6R,6aR)-6-(hydroxymethyl)-2,2-dimethyltetrahydrofuro[3,4-d][1,3]dioxol-4-yl)-1H-pyrrolo[2,3-b]pyridine-5-carbonitrile (7.92 g, 21 mmol, 70% yield) as white solid. LCMS ESI(+) m/z 385 (M+H).
Step D. Preparation of 6-chloro-4-(((1s,3S)-3-fluorocyclobutyl)amino)-1-43aR,4R,6R,6aR)-6-(hydroxymethyl)-2,2-dimethyltetrahydrofuro[3,4-d][1,3]dioxol-4-yl)-1H-pyrrolo[2,3-b]pyridine-5-carbonitrile: A mixture of Et3N (3.77 mL, 27.1 mmol), (1s,3s)-3-fluorocyclobutan-1-amine hydrochloride (1.47 g, 11.7 mmol) and 4,6-dichloro-1-((3aR,4R,6R,6aR)-6-(hydroxymethyl)-2,2-dimethyltetrahydrofuro[3,4-d][1,3]dioxol-4-yl)-1H-pyrrolo[2,3-b]pyridine-5-carbonitrile (3.47 g, 9 mmol) in sec-butanol (30 mL) was stirred at 102° C. for 18 h. After being cooled to ambient temperature, the solvent was removed under reduced pressure. The resulting solid was partitioned between water (30 mL) and ethyl acetate (50 mL). The organic layer was separated, washed with brine, dried (sodium sulfate), filtered and concentrated under reduced pressure. The resulting solid was suspended in MTBE (30 mL) and stirred for 10 minutes. Solids were collected by filtration and dried to give 6-chloro-4-(((1s,3S)-3-fluorocyclobutyl)amino)-1-((3aR,4R,6R,6aR)-6-(hydroxymethyl)-2,2-dimethyltetrahydrofuro[3,4-d][1,3]dioxol-4-yl)-1H-pyrrolo[2,3-b]pyridine-5-carbonitrile (2.3 g, 5.26 mmol, 58% yield) as a solid. LCMS ESI(+) m/z 437 (M+H).
Step E. Preparation of ((3aR,4R,6R,6aR)-6-(6-chloro-5-cyano-4-4(1s,3S)-3-fluorocyclobutyl)amino)-1H-pyrrolo[2,3-b]pyridin-1-yl)-2,2-dimethyltetrahydrofuro[3,4-d][1,3]dioxol-4-yl)methyl methanesulfonate: To a solution of 6-chloro-4-(((1s,3S)-3-fluorocyclobutyl)amino)-1-((3aR,4R,6R,6aR)-6-(hydroxymethyl)-2,2-dimethyltetrahydrofuro[3,4-d][1,3]dioxol-4-yl)-1H-pyrrolo[2,3-b]pyridine-5-carbonitrile (10.94 g, 25.04 mmol) in DCM (50 mL) was added methanesulfonyl chloride (2.33 mL, 30.1 mmol) at 0° C. The reaction mixture was stirred at 0° C. for 2 hours. Water (20 mL) and MTBE (30 mL) were added. The organic layer was separated, washed with brine, dried (sodium sulfate), filtered and concentrated under reduced pressure to give ((3aR,4R,6R,6aR)-6-(6-chloro-5-cyano-4-(((1s,3S)-3-fluorocyclobutyl)amino)-1H-pyrrolo[2,3-b]pyridin-1-yl)-2,2-dimethyltetrahydrofuro[3,4-d][1,3]dioxol-4-yl)methyl methanesulfonate (12.8 g, 24.9 mmol, 99% yield) as an oil, which was used without further purification.
Step F. Preparation of S-(((3aS,4S,6R,6aR)-6-(6-chloro-5-cyano-4-(((1s,3S)-3-fluorocyclobutyl)amino)-1H-pyrrolo[2,3-b]pyridin-1-yl)-2,2-dimethyltetrahydrofuro[3,4-d][1,3]dioxol-4-yl)methyl) ethanethioate: To a solution of ((3aR,4R,6R,6aR)-6-(6-chloro-5-cyano-4-(((1s,3S)-3-fluorocyclobutyl)amino)-1H-pyrrolo[2,3-b]pyridin-1-yl)-2,2-dimethyltetrahydrofuro[3,4-d][1,3]dioxol-4-yl)methyl methanesulfonate (12.8 g, 24.9 mmol) in DMF (60 mL) was added tetrabutylammonium bromide (0.8 g, 2.49 mmol) and cesium carbonate (16.2 g, 49.7 mmol) at ambient temperature. The reaction mixture was stirred for 5 minutes, then thiolacetic acid (3.55 mL, 49.7 mmol) was added. The mixture was stirred at ambient temperature for 18 hours. Water (30 mL) and MTBE (30 mL) were added. The organic layer was separated, washed with brine, dried (sodium sulfate), filtered and concentrated under reduced pressure. The residue obtained was purified by flash chromatography on silica gel 2:1 hexane/ethyl acetate to give S-(((3aS,4S,6R,6aR)-6-(6-chloro-5-cyano-4-4(1s,3S)-3-fluorocyclobutyl)amino)-1H-pyrrolo[2,3-b]pyridin-1-yl)-2,2-dimethyltetrahydrofuro[3,4-d][1,3]dioxol-4-yl)methyl) ethanethioate as a solid (11.9 g, 24 mmol, 97% yield) as a solid. LCMS ESI(+) m/z 495 (M+H).
Step G. Preparation of diethyl (((((3aS,4S,6R,6aR)-6-(6-chloro-5-cyano-4-(((1s,3S)-3-fluorocyclobutyl)amino)-1H-pyrrolo[2,3-b]pyridin-1-yl)-2,2-dimethyltetrahydrofuro[3,4-d][1,3]dioxol-4-yl)methyl)thio)methyl)phosphonate: To a suspension of S-(((3aS,4S,6R,6aR)-6-(6-chloro-5-cyano-4-(((1s,3S)-3-fluorocyclobutyl)amino)-1H-pyrrolo[2,3-b]pyridin-1-yl)-2,2-dimethyltetrahydrofuro[3,4-d][1,3]dioxol-4-yl)methyl) ethanethioate (1.07 g, 2.2 mmol) in degassed ethanol (15 mL) was added a solution of sodium ethoxide, 21% in ethanol (1.6 mL, 4.3 mmol) at ambient temperature. The mixture was stirred at ambient temperature for 5 minutes. (Diethoxyphosphoryl)methyl 4-methylbenzenesulfonate (0.84 g, 2.6 mmol) was added at ambient temperature. The reaction mixture was stirred in a 56° C. bath for 2 hours. After being cooled to ambient temperature, the ethanol was removed under reduced pressure. Ethyl acetate (50 mL) and brine (40 mL) were added. The organic layer was separated, washed with brine, dried (sodium sulfate), filtered and concentrated under reduced pressure. The residue obtained was purified by flash chromatography on silica gel, eluting with ethyl acetate to give diethyl (((((3aS,4S,6R,6aR)-6-(6-chloro-5-cyano-4-(((1 s, 3S)-3-fluorocyclobutyl)amino)-1H-pyrrolo[2,3-b]pyridin-1-yl)-2,2-dimethyltetrahydrofuro[3,4-d][1,3]dioxol-4-yl)methyl)thio)methyl)phosphonate (1.17 g, 1.94 mmol, 90% yield) as a solid. LCMS ESI(+) m/z 603 (M+H).
Step H. Preparation of diethyl (((((3aS,4S,6R,6aR)-6-(6-chloro-5-cyano-4-(((1s,3S)-3-fluorocyclobutyl)amino)-1H-pyrrolo[2,3-b]pyridin-1-yl)-2,2-dimethyltetrahydrofuro[3,4-d][1,3]dioxol-4-yl)methyl)sulfonyl)methyl)phosphonate: To a solution of diethyl (((((3aS,4S,6R,6aR)-6-(6-chloro-5-cyano-4-(((1s,3S)-3-fluorocyclobutyl)amino)-1H-pyrrolo[2,3-b]pyridin-1-yl)-2,2-dimethyltetrahydrofuro[3,4-d][1,3]dioxol-4-yl)methyl)thio)methyl)phosphonate in MTBE (3 mL) was added 3-chloroperbenzoic acid (0.26 g, 1 mmol) at 0° C. and stirred at this temperature for 2 hours. 10% aqueous sodium sulfite (5 mL) and MTBE (10 mL) were added. The organic layer was separated, washed with brine, dried (sodium sulfate), filtered and concentrated under reduced pressure. The residue obtained was purified by flash chromatography on silica gel 1:1 hexane/ethyl acetate to give diethyl (((((3aS,4S,6R,6aR)-6-(6-chloro-5-cyano-4-(((1s,3S)-3-fluorocyclobutyl)amino)-1H-pyrrolo[2,3-b]pyridin-1-yl)-2,2-dimethyltetrahydrofuro[3,4-d][1,3]dioxol-4-yl)methyl)sulfonyl)methyl)phosphonate (0.275 g, 0.43 mmol, 87% yield) as a solid. LCMS ESI(+) m/z 635 (M+H).
Step I. Preparation of (((((2S,3S,4R,5R)-5-(6-chloro-5-cyano-4-(((1s,3S)-3-fluorocyclobutyl)amino)-1H-pyrrolo[2,3-b]pyridin-1-yl)-3,4-dihydroxytetrahydrofuran-2-yl)methyl)sulfonyl)methyl)phosphonic acid: Diethyl (((((3aS,4S,6R,6aR)-6-(6-chloro-5-cyano-4-(((1s,3S)-3-fluorocyclobutyl)amino)-1H-pyrrolo[2,3-b]pyridin-1-yl)-2,2-dimethyltetrahydrofuro[3,4-d][1,3]dioxol-4-yl)methyl)sulfonyl)methyl)phosphonate (0.27 g, 0.43 mmol) in dichloromethane (4 mL) was added 2,6-lutidine (0.35 mL, 3 mmol) and bromotrimethylsilane (0.4 mL, 3 mmol) at ambient temperature. The reaction mixture was stirred at this temperature for 18 hours. The reaction mixture was concentrated under reduced pressure. The residue was co-evaporated with methanol three times to give a light yellow solid. Saturated potassium hydrogen sulfate solution (30 mL) and ethyl acetate (50 mL) were added. The organic layer was separated, washed with 10% potassium hydrogen sulfate, dried (sodium sulfate), filtered and concentrated under reduced pressure. The residue obtained was dissolved in 80% aqueous formic acid solution (20 mL) and stirred at ambient temperature for 3 hours. Solvent was removed under reduced pressure. The residue was co-evaporated with methanol 3 times and dried under vacuum to give a solid. The solid was dissolved in methanol (40 mL) and ammonium hydroxide solution (5 mL) was added. The mixture was stirred at ambient temperature for 30 minutes. Solvent was removed under reduced pressure. The residue obtained was suspended in acetonitrile (20 mL) and stirred at ambient temperature for 10 minutes. The resulting solids were collected by filtration and dried to give (((((2S,3S,4R,5R)-5-(6-chloro-5-cyano-4-(((1s,3S)-3-fluorocyclobutyl)amino)-1H-pyrrolo[2,3-b]pyridin-1-yl)-3,4-dihydroxytetrahydrofuran-2-yl)methyl)sulfonyl)methyl)phosphonic acid (0.197 g, 0.37 mmol, 85% yield) as bis ammonium salt. 1H NMR (400 MHz, D2O, 6): 7.19 (s, 1H), 6.55 (s, 1H), 6.00 (d, 1H), 4.94-4.75 (m, 1H), 4.50-4.47 (m, 1H), 4.46-4.41 (m, 1H), 4.25 (t, 1H), 4.01-3.92 (m, 1H), 3.81-3.70 (m, 2H), 3.43 (d, 2H), 2.88-2.83 (m, 2H), 2.29-2.21 (m, 2H); 19F NMR (375 MHz, D2O, 6): −167.37-167.68 (m); 31P NMR (162 MHz, D2O, 6): 2.95 (s).
Step A: Preparation of 4-chloro-5-cyano-1H-pyrrolo[2,3-b]pyridine 7-oxide: A suspension of 4-chloro-1H-Pyrrolo[2,3-b]pyridine-5-carbonitrile (10.0 g, 56.3 mmol) in ethyl acetate (150 mL) was added 3-chloroperbenzoic acid (18.9 g, 84.5 mmol) at ambient temperature. After addition, the reaction mixture was stirred at 52° C. (bath) for 3 hours. After cooling to ambient temperature, hexane (110 mL) was added and the mixture was stirred at ambient temperature for 10 minutes. Solid was collected by filtration, washed with MTBE and dried to give 4-chloro-7-oxo-1H-pyrrolo[2,3-b]pyridine-5-carbonitrile (8.2 g, 75%) as a solid. LCMS ESI (+) m/z 194 (M+H).
Step B: Preparation of 4,6-dichloro-1H-pyrrolo[2,3-b]pyridine-5-carbonitrile: A suspension of 4-chloro-7-oxo-1H-pyrrolo[2,3-b]pyridine-5-carbonitrile (8.2 g, 42.4 mmol) in NMP (80 mL) was added phosphorus (V) oxychloride (7.9 mL, 84.7 mmol) at 0° C. After addition, the reaction mixture was stirred at 0° C. for 1 hour. Ice-water (300 mL) was added and the mixture was stirred at ambient temperature for 30 minutes. Solid was collected by filtration, washed with water and dried to give 4,6-dichloro-1H-pyrrolo[2,3-b]pyridine-5-carbonitrile (9.0 g, 99%) as a pink solid. LCMS ESI (−) m/z 210 (M−H).
Step C: Preparation of 6-chloro-4-(cyclopentylamino)-1H-pyrrolo[2,3-b]pyridine-5-carbonitrile: A mixture of triethyl amine (11.7 mL, 84.4 mmol), cyclopentanamine (10.8 g, 126.6 mmol) and 4,6-dichloro-1H-pyrrolo[2,3-b]pyridine-5-carbonitrile (8.95 g, 42.2 mmol) in NMP (40 mL) was stirred at 100° C. for 2 hours. After cooling to ambient temperature, water (200 mL) was added and stirred at ambient temperature for 30 minutes. Solid was collected by filtration and washed with water and dried. The resulting solid was suspended in IPA (60 mL) and stirred at ambient temperature for 30 minutes. Solid was collected by filtration, washed with IPA (20 mL) and dried to give 6-chloro-4-(cyclopentylamino)-1H-pyrrolo[2,3-b]pyridine-5-carbonitrile (9.3 g, 85%) as a solid. LCMS ESI (+) m/z 261 (M+H).
Step D: Preparation of 6-chloro-4-(cyclopentylamino)-1-((3aR,4R,6R,6aR)-6-(hydroxymethyl)-2,2-dimethyltetrahydrofuro[3,4-d][1,3]dioxol-4-yl)-1H-pyrrolo[2,3-b]pyridine-5-carbonitrile: (3aR,6R,6aR)-6-[[tert-butyl(dimethyl)silyl]oxymethyl]-2,2-dimethyl-3a,4,6,6a-tetrahydrofuro[3,4-d][1,3]dioxol-4-ol (5.7 g, 18.7 mmol) and carbon tetrachloride (1.99 mL, 20.6 mmol) in toluene (50 mL) and cooled to −10° C. Tris(dimethylamino)phosphine (3.6 mL, 19.7 mmol) was added slowly at −10° C. After addition, the mixture was stirred at 0˜−10° C. for 1 hour. Water (50 mL) was added. The organic layer was separated, dried (sodium sulfate), filtered and concentrated under reduced pressure to give tert-butyl(((3aR,4R,6R,6aR)-6-chloro-2,2-dimethyltetrahydrofuro[3,4-d][1,3]dioxol-4-yl)methoxy)dimethylsilane. The residue obtained was dissolved in acetonitrile (10 mL) which was used directly in the next step.
In a separate round bottom flask, 6-chloro-4-(cyclopentylamino)-1H-pyrrolo[2,3-b]pyridine-5-carbonitrile (2.44 g, 9.4 mmol) in acetonitrile (25 mL) was cooled to 0° C. and 60% sodium hydride (0.77 g, 19.2 mmol) was added. After addition, the mixture was warmed to ambient temperature and stirred at ambient temperature for 1 hour. The ribose mixture prepared above was added at ambient temperature and the reaction mixture was stirred at ambient temperature for 20 hours. Ice-water (30 mL) and MTBE (30 mL) were added. The organic layer was separated, washed with brine, dried (sodium sulfate) and concentrated under reduced pressure. The residue obtained was dissolved in THF (10 mL) and tetrabutyl ammonium fluoride, 1.0 M in THF (21.5 mL, 21.5 mmol) was added at ambient temperature and stirred at ambient temperature for 1 hour. Saturated sodium bicarbonate solution (20 mL) and ethyl acetate (20 mL) were added. The organic layer was separated, dried (sodium sulfate), filtered and concentrated under reduced pressure. The residue obtained was purified by flash chromatography on silica gel 5:1 DCM/ethyl acetate to give 1-[(3aR,4R,6R,6aR)-6-(hydroxymethyl)-2,2-dimethyl-3a,4,6,6a-tetrahydrofuro[3,4-d][1,3]dioxol-4-yl]-6-chloro-4-(cyclopentylamino)pyrrolo[2,3-b]pyridine-5-carbonitrile (2.27 g, 56%) as a solid. LCMS ESI (+) m/z 433 (M+H).
Step E: Preparation of diethyl (((((3aS,4S,6R,6aR)-6-(6-chloro-5-cyano-4-(cyclopentylamino)-1H-pyrrolo[2,3-b]pyridin-1-yl)-2,2-dimethyltetrahydrofuro[3,4-d][1,3]dioxol-4-yl)methyl)thio)methyl)phosphonate: 1-[(3aR,4R,6R,6aR)-6-(hydroxymethyl)-2,2-dimethyl-3a,4,6,6a-tetrahydrofuro[3,4-d][1,3]dioxol-4-yl]-6-chloro-4-(cyclopentylamino)pyrrolo[2,3-b]pyridine-5-carbonitrile (0.50 g, 1.2 mmol) and triethylamine (0.32 mL, 2.3 mmol) in dichloromethane (5.8 mL) was treated with methanesulfonyl chloride (0.18 mL, 2.3 mmol), then the mixture was stirred at ambient temperature for 2 hours. The reaction was quenched with saturated ammonium chloride solution. The aqueous separation was extracted with DCM (2×). The combined organic separations were washed with brine, then dried with MgSO4, filtered and concentrated to yield an orange oil. The oil was dissolved in DMF (8 mL), 2-((diethoxyphosphoryl)methyl)isothiouronium 4-methylbenzenesulfonate (2.1 g, 5.3 mmol) and 21% sodium ethoxide in ethanol (3.9 mL, 10.4 mmol) were added at ambient temperature. The reaction mixture was stirred at ambient temperature for overnight. The solution was quenched with water and partitioned with ethyl acetate. The aqueous separation was extracted with ethyl acetate (3×). The combined organic separations were washed with brine, dried with MgSO4, filtered and then concentrated. The residue obtained was purified by flash chromatography on silica gel, 0 to 50% (3:1 EtOAc:EtOH)/hexanes to give diethyl (((((3aS,4S,6R,6aR)-6-(6-chloro-5-cyano-4-(cyclopentylamino)-1H-pyrrolo[2,3-b]pyridin-1-yl)-2,2-dimethyltetrahydrofuro[3,4-d][1,3]dioxol-4-yl)methyl)thio)methyl)phosphonate (0.44 g, 64%) as an oil. LCMS ESI (+) m/z 599 (M+H).
Step F: Preparation of (((((3aS,4S,6R,6aR)-6-(6-chloro-5-cyano-4-(cyclopentylamino)-1H-pyrrolo[2,3-b]pyridin-1-yl)-2,2-dimethyltetrahydrofuro[3,4-d][1,3]dioxol-4-yl)methyl)thio)methyl)phosphonic acid: To a solution of diethyl (((((3aS,4S,6R,6aR)-6-(6-chloro-5-cyano-4-(cyclopentylamino)-1H-pyrrolo[2,3-b]pyridin-1-yl)-2,2-dimethyltetrahydrofuro[3,4-d][1,3]dioxol-4-yl)methyl)thio)methyl)phosphonate (9.5 g, 15.9 mmol) in dichloromethane (50 mL) was added 2,6-lutidine (12.9 mL, 111 mmol) and bromotrimethylsilane (14.65 mL, 111 mmol) at ambient temperature. The reaction mixture was stirred at this temperature for 18 hours. The reaction mixture was concentrated under reduced pressure. The residue was co-evaporated with methanol (3×) to give a light yellow solid. Saturated potassium hydrogen sulfate solution (30 mL) and ethyl acetate (50 mL) were added. The organic layer was separated, washed with 10% potassium hydrogen sulfate, dried (sodium sulfate), filtered and concentrated under reduced pressure to give (((((3aS,4S,6R,6aR)-6-(6-chloro-5-cyano-4-(cyclopentylamino)-1H-pyrrolo[2,3-b]pyridin-1-yl)-2,2-dimethyltetrahydrofuro[3,4-d][1,3]dioxol-4-yl)methyl)thio)methyl)phosphonic acid (8.4 g, 15 mmol, 98% yield) as a solid.
Step G: Preparation of (((((((3aS,4S,6R,6aR)-6-(6-chloro-5-cyano-4-(cyclopentylamino)-1H-pyrrolo[2,3-b]pyridin-1-yl)-2,2-dimethyltetrahydrofuro[3,4-d][1,3]dioxol-4-yl)methyl)thio)methyl)phosphoryl)bis(oxy))bis(methylene) bis(2,2-dimethylpropanoate): To a solution of (((((3aS,4S,6R,6aR)-6-(6-chloro-5-cyano-4-(cyclopentylamino)-1H-pyrrolo[2,3-b]pyridin-1-yl)-2,2-dimethyltetrahydrofuro[3,4-d][1,3]dioxol-4-yl)methyl)thio)methyl)phosphonic acid (2.01 g, 3.7 mmol) in NMP (10 mL) was added N,N-diisopropylethylamine (3.29 mL, 18.51 mmol) and chloromethyl pivalate (2.79 g, 18.5 mmol). The reaction mixture was stirred in a 50° C. bath for 24 hours. After being cooled to ambient temperature, water (20 mL) and MTBE (30 mL) were added. The organic layer was separated, dried (sodium sulfate), filtered and concentrated under reduced pressure. The residue obtained was purified flash chromatography on silica gel 2:1 hexane/ethyl acetate to give (((((((3aS,4S,6R,6aR)-6-(6-chloro-5-cyano-4-(cyclopentylamino)-1H-pyrrolo[2,3-b]pyridin-1-yl)-2,2-dimethyltetrahydrofuro[3,4-d][1,3]dioxol-4-yl)methyl)thio)methyl)phosphoryl)bis(oxy))bis(methylene) bis(2,2-dimethylpropanoate) (2.03 g, 2.63 mmol, 71% yield) as a solid. LCMS ESI(+) m/z 771 (M+H).
Step H. Preparation of (((((((3aS,4S,6R,6aR)-6-(6-chloro-5-cyano-4-(cyclopentylamino)-1H-pyrrolo[2,3-b]pyridin-1-yl)-2,2-dimethyltetrahydrofuro[3,4-d][1,3]dioxol-4-yl)methyl)sulfonyl)methyl)phosphoryl)bis(oxy))bis(methylene) bis(2,2-dimethylpropanoate): To a solution of (((((((3aS,4S,6R,6aR)-6-(6-chloro-5-cyano-4-(cyclopentylamino)-1H-pyrrolo[2,3-b]pyridin-1-yl)-2,2-dimethyltetrahydrofuro[3,4-d][1,3]dioxol-4-yl)methyl)thio)methyl)phosphoryl)bis(oxy))bis(methylene) bis(2,2-dimethylpropanoate) (1.92 g, 2.49 mmol) in MTBE (20 mL) was added 3-chloroperbenzoic acid (1.17 g, 5.2 mmol) at 0° C. and stirred at this temperature for 3 hours. It was added to 10% aqueous sodium sulfite (30 mL) and MTBE (40 mL) solution. The organic layer was separated, washed with brine, dried (sodium sulfate), filtered and concentrated under reduced pressure. The residue obtained was purified by flash chromatography on silica gel 1:1 hexane/ethyl acetate to give (((((((3aS,4S,6R,6aR)-6-(6-chloro-5-cyano-4-(cyclopentylamino)-1H-pyrrolo[2,3-b]pyridin-1-yl)-2,2-dimethyltetrahydrofuro[3,4-d][1,3]dioxol-4-yl)methyl)sulfonyl)methyl)phosphoryl)bis(oxy))bis(methylene) bis(2,2-dimethylpropanoate) (1.43 g, 1.8 mmol, 72% yield) as a solid.
Step I. Preparation of (((((((2S,3S,4R,5R)-5-(6-chloro-5-cyano-4-(cyclopentylamino)-1H-pyrrolo[2,3-b]pyridin-1-yl)-3,4-di hydroxytetrahydrofuran-2-yl)methyl)sulfonyl)methyl)phosphoryl)bis(oxy))bis(methylene) bis(2,2-dimethylpropanoate): A solution of (((((((3aS,4S,6R,6aR)-6-(6-chloro-5-cyano-4-(cyclopentylamino)-1H-pyrrolo[2,3-b]pyridin-1-yl)-2,2-dimethyltetrahydrofuro[3,4-d][1,3]dioxol-4-yl)methyl)sulfonyl)methyl)phosphoryl)bis(oxy))bis(methylene) bis(2,2-dimethylpropanoate) (6.28 g, 7.8 mmol) in 80% aqueous formic acid (20 mL) was stirred at ambient temperature for 3 hours. The solvent was removed under reduced pressure and co-evaporated with ethyl acetate (3×). The residue obtained was purified by flash chromatography on silica gel 1:1 hexane/ethyl acetate to give a solid. It was dissolved in DCM (20 mL) and 2 N HCl in ether (10 mL) was added. Solvent was removed under reduced pressure and dried to give (((((((2S,3S,4R,5R)-5-(6-chloro-5-cyano-4-(cyclopentylamino)-1H-pyrrolo[2,3-b]pyridin-1-yl)-3,4-dihydroxytetrahydrofuran-2-yl)methyl)sulfonyl)methyl)phosphoryl)bis(oxy))bis(methylene) bis(2,2-dimethylpropanoate) (5.2 g, 6.8 mmol, 87% yield) as a solid. LCMS ESI(+) m/z 763. 1H NMR (400 MHz, CDCl3, δ): 7.28 (d, 1H), 6.65 (d, 1H), 6.15 (d, 1H), 5.74-5.70 (m, 2H), 5.60-5.53 (m, 2H), 5.34 (d, 1H), 4.58-4.56 (m, 1H), 4.48-4.43 (m, 3H), 4.31 (d, 1H), 4.15-4.06 (m, 1H), 3.95 (t, 1H), 3.75 (t, 1H), 3.66 (d, 1H), 3.45 (d, 1H), 2.15-2.09 (m, 2H), 1.86-1.61 (m, 6H), 1.22 (s, 9H), 1.16 (s, 9H); 31P NMR (162 MHz, CDCl3, δ): 11.67.
Step A: Preparation of 4-chloro-5-cyano-1H-pyrrolo[2,3-b]pyridine 7-oxide: A suspension of 4-chloro-1H-Pyrrolo[2,3-b]pyridine-5-carbonitrile (10.0 g, 56.3 mmol) in ethyl acetate (150 mL) was added 3-chloroperbenzoic acid (18.9 g, 84.5 mmol) at ambient temperature. After addition, the reaction mixture was stirred at 52° C. (bath) for 3 hours. After cooling to ambient temperature, hexane (110 mL) was added and the mixture was stirred at ambient temperature for 10 minutes. Solid was collected by filtration, washed with MTBE and dried to give 4-chloro-7-oxo-1H-pyrrolo[2,3-b]pyridine-5-carbonitrile (8.2 g, 75%) as a solid. LCMS ESI (+) m/z 194 (M+H).
Step B: Preparation of 4,6-dichloro-1H-pyrrolo[2,3-b]pyridine-5-carbonitrile: A suspension of 4-chloro-7-oxo-1H-pyrrolo[2,3-b]pyridine-5-carbonitrile (8.2 g, 42.4 mmol) in NMP (80 mL) was added phosphorus (V) oxychloride (7.9 mL, 84.7 mmol) at 0° C. After addition, the reaction mixture was stirred at 0° C. for 1 hour. Ice-water (300 mL) was added and the mixture was stirred at ambient temperature for 30 minutes. Solid was collected by filtration, washed with water and dried to give 4,6-dichloro-1H-pyrrolo[2,3-b]pyridine-5-carbonitrile (9.0 g, 99%) as a pink solid. LCMS ESI (−) m/z 210 (M−H).
Step C: Preparation of 4,6-dichloro-1-((3aR,4R,6R,6aR)-6-(hydroxymethyl)-2,2-dimethyltetrahydrofuro[3,4-d][1,3]dioxol-4-yl)-1H-pyrrolo[2,3-b]pyridine-5-carbonitrile: In a dry 100 mL flask, CCl4 (6.82 mL, 70.51 mmol) and (3aR,6R,6aR)-6-(((tert-butyldimethylsilyl)oxy)methyl)-2,2-dimethyltetrahydrofuro[3,4-d][1,3]dioxol-4-ol (20.57 g, 67.58 mmol) was dissolved in toluene (100 mL) and cooled in a −10° C. bath. Tris(dimethylamino)phosphine (12.8 mL, 70.5 mmol) was added slowly at −10° C. After addition, the mixture was stirred with warming to 0° C. over 1 hour. Water (50 mL) and MTBE (20 mL) were added. The organic layer was separated, dried (sodium sulfate), filtered and concentrated under reduced pressure. The residue obtained was dissolved in acetonitrile (20 mL) which was used directly in the next step.
In a separate flask, 4,6-dichloro-1H-pyrrolo[2,3-b]pyridine-5-carbonitrile (6.23 g, 29.4 mmol) in acetonitrile (80 mL) was added sodium hydride, 60% dispersion in mineral oil (1.76 g, 44.1 mmol) at ambient temperature. The mixture was stirred at ambient temperature for 2 h. The ribose mixture prepared above was added at ambient temperature, and the reaction mixture was stirred at ambient temperature for 20 hours. Ice-water (100 mL) was added, then MTBE (200 mL) was added. The organic layer was separated, washed with brine, dried (sodium sulfate) and concentrated under reduced pressure. The residue obtained was dissolved in THF (10 mL) and Et3N.3HF (9.6 mL, 58.8 mmol) was added and then stirred at ambient temperature for 5 hours. Saturated sodium bicarbonate solution (20 mL) and ethyl acetate (50 mL) were added. The organic layer was separated, dried (sodium sulfate), filtered and concentrated under reduced pressure. The residue obtained was purified by flash chromatography on silica gel 1:1 hexane/ethyl acetate to give 4,6-dichloro-1-((3aR,4R,6R,6aR)-6-(hydroxymethyl)-2,2-dimethyltetrahydrofuro[3,4-d][1,3]dioxol-4-yl)-1H-pyrrolo[2,3-b]pyridine-5-carbonitrile (7.92 g, 20.6 mmol, 70% yield) as white solid. LCMS ESI(+) m/z 385 (M+H).
Step D. Preparation of 6-chloro-4-(((1s,3S)-3-fluorocyclobutyl)amino)-1-43aR,4R,6R,6aR)-6-(hydroxymethyl)-2,2-dimethyltetrahydrofuro[3,4-d][1,3]dioxol-4-yl)-1H-pyrrolo[2,3-b]pyridine-5-carbonitrile: A mixture of Et3N (3.77 mL, 27.1 mmol), (1s,3s)-3-fluorocyclobutan-1-amine hydrochloride (1.47 g, 11.7 mmol) and 4,6-dichloro-1-((3aR,4R,6R,6aR)-6-(hydroxymethyl)-2,2-dimethyltetrahydrofuro[3,4-d][1,3]dioxol-4-yl)-1H-pyrrolo[2,3-b]pyridine-5-carbonitrile (3.47 g, 9 mmol) in sec-butanol (30 mL) was stirred at 102° C. for 18 h. After being cooled to ambient temperature, the solvent was removed under reduced pressure. The resulting solid was partitioned between water (30 mL) and ethyl acetate (50 mL). The organic layer was separated, washed with brine, dried (sodium sulfate), filtered and concentrated under reduced pressure. The resulting solid was suspended in MTBE (30 mL) and stirred for 10 minutes. Solids were collected by filtration and dried to give 6-chloro-4-(((1s,3S)-3-fluorocyclobutyl)amino)-1-((3aR,4R,6R,6aR)-6-(hydroxymethyl)-2,2-dimethyltetrahydrofuro[3,4-d][1,3]dioxol-4-yl)-1H-pyrrolo[2,3-b]pyridine-5-carbonitrile (2.3 g, 5.26 mmol, 58% yield) as a solid. LCMS ESI(+) m/z 437 (M+H).
Step E. Preparation of ((3aR,4R,6R,6aR)-6-(6-chloro-5-cyano-4-4(1s,3S)-3-fluorocyclobutyl)amino)-1H-pyrrolo[2,3-b]pyridin-1-yl)-2,2-dimethyltetrahydrofuro[3,4-d][1,3]dioxol-4-yl)methyl methanesulfonate: To a solution of 6-chloro-4-(((1s,3S)-3-fluorocyclobutyl)amino)-1-((3aR,4R,6R,6aR)-6-(hydroxymethyl)-2,2-dimethyltetrahydrofuro[3,4-d][1,3]dioxol-4-yl)-1H-pyrrolo[2,3-b]pyridine-5-carbonitrile (10.94 g, 25 mmol) in DCM (50 mL) was added methanesulfonyl chloride (2.33 mL, 30.1 mmol) at 0° C. The reaction mixture was stirred at 0° C. for 2 hours. Water (20 mL) and MTBE (30 mL) were added. The organic layer was separated, washed with brine, dried (sodium sulfate), filtered and concentrated under reduced pressure to give ((3aR,4R,6R,6aR)-6-(6-chloro-5-cyano-4-(((1s,3S)-3-fluorocyclobutyl)amino)-1H-pyrrolo[2,3-b]pyridin-1-yl)-2,2-dimethyltetrahydrofuro[3,4-d][1,3]dioxol-4-yl)methyl methanesulfonate (12.8 g, 24.9 mmol, 99% yield) as an oil, which was used without further purification.
Step F. Preparation of S-(((3aS,4S,6R,6aR)-6-(6-chloro-5-cyano-4-(((1s,3S)-3-fluorocyclobutyl)amino)-1H-pyrrolo[2,3-b]pyridin-1-yl)-2,2-dimethyltetrahydrofuro[3,4-d][1,3]dioxol-4-yl)methyl) ethanethioate: To a solution of ((3aR,4R,6R,6aR)-6-(6-chloro-5-cyano-4-(((1s,3S)-3-fluorocyclobutyl)amino)-1H-pyrrolo[2,3-b]pyridin-1-yl)-2,2-dimethyltetrahydrofuro[3,4-d][1,3]dioxol-4-yl)methyl methanesulfonate (12.8 g, 24.9 mmol) in DMF (60 mL) was added tetrabutylammonium bromide (0.8 g, 2.49 mmol) and cesium carbonate (16.2 g, 49.7 mmol) at ambient temperature. The reaction mixture was stirred for 5 minutes, then thiolacetic acid (3.55 mL, 49.7 mmol) was added. The mixture was stirred at ambient temperature for 18 hours. Water (30 mL) and MTBE (30 mL) were added. The organic layer was separated, washed with brine, dried (sodium sulfate), filtered and concentrated under reduced pressure. The residue obtained was purified by flash chromatography on silica gel 2:1 hexane/ethyl acetate to give S-(((3aS,4S,6R,6aR)-6-(6-chloro-5-cyano-44(1s,3S)-3-fluorocyclobutyl)amino)-1H-pyrrolo[2,3-b]pyridin-1-yl)-2,2-dimethyltetrahydrofuro[3,4-d][1,3]dioxol-4-yl)methyl) ethanethioate (11.89 g, 24 mmol, 96% yield) as a solid. LCMS ESI(+) m/z 495 (M+H).
Step G. Preparation of diethyl (((((3aS,4S,6R,6aR)-6-(6-chloro-5-cyano-4-(((1s,3S)-3-fluorocyclobutyl)amino)-1H-pyrrolo[2,3-b]pyridin-1-yl)-2,2-dimethyltetrahydrofuro[3,4-d][1,3]dioxol-4-yl)methyl)thio)methyl)phosphonate: To a suspension of S-(((3aS,45,6R,6aR)-6-(6-chloro-5-cyano-4-(((1s,3S)-3-fluorocyclobutyl)amino)-1H-pyrrolo[2,3-b]pyridin-1-yl)-2,2-dimethyltetrahydrofuro[3,4-d][1,3]dioxol-4-yl)methyl) ethanethioate (1.07 g, 2.2 mmol) in degassed ethanol (15 mL) was added a solution of sodium ethoxide, 21% (w/w) in ethanol (1.6 mL, 4.3 mmol) at ambient temperature. The mixture was stirred at ambient temperature for 5 minutes. (diethoxyphosphoryl)methyl 4-methylbenzenesulfonate (0.84 g, 2.59 mmol) was added at ambient temperature. The reaction mixture was stirred in a 56° C. bath for 2 hours. After being cooled to ambient temperature, the ethanol was removed under reduced pressure. Ethyl acetate (50 mL) and brine (40 mL) were added. The organic layer was separated, washed with brine, dried (sodium sulfate), filtered and concentrated under reduced pressure. The residue obtained was purified by flash chromatography on silica gel, eluting with ethyl acetate to give diethyl (((((3aS,4S,6R,6aR)-6-(6-chloro-5-cyano-44(1s,3S)-3-fluorocyclobutyl)amino)-1H-pyrrolo[2,3-b]pyridin-1-yl)-2,2-dimethyltetrahydrofuro[3,4-d][1,3]dioxol-4-yl)methyl)thio)methyl)phosphonate (1.17 g, 1.94 mmol, 90% yield) as a solid. LCMS ESI(+) m/z 603 (M+H).
Step H. Preparation of (((((3aS,4S,6R,6aR)-6-(6-chloro-5-cyano-4-(((1s,3S)-3-fluorocyclobutyl)amino)-1H-pyrrolo[2,3-b]pyridin-1-yl)-2,2-dimethyltetrahydrofuro[3,4-d][1,3]dioxol-4-yl)methyl)thio)methyl)phosphonic acid: To a solution of diethyl (((((3aS,4S,6R,6aR)-6-(6-chloro-5-cyano-4-(((1s,3S)-3-fluorocyclobutyl)amino)-1H-pyrrolo[2,3-b]pyridin-1-yl)-2,2-dimethyltetrahydrofuro[3,4-d][1,3]dioxol-4-yl)methyl)thio)methyl)phosphonate (0.28 g, 0.46 mmol) in dichloromethane (2 mL) was added 2,6-lutidine (0.38 mL, 3.25 mmol) and bromotrimethylsilane (0.43 mL, 3.25 mmol) at ambient temperature and the reaction mixture was stirred at this temperature for 18 hours. The reaction mixture was concentrated under reduced pressure. The residue was co-evaporated with methanol three times to give a light yellow solid. Saturated potassium hydrogen sulfate solution (30 mL) and ethyl acetate (50 mL) were added. The organic layer was separated, washed with 10% potassium hydrogen sulfate, dried (sodium sulfate), filtered and concentrated under reduced pressure to give (((((3aS,4S,6R,6aR)-6-(6-chloro-5-cyano-4-(((1s,3S)-3-fluorocyclobutyl)amino)-1H-pyrrolo[2,3-b]pyridin-1-yl)-2,2-dimethyltetrahydrofuro[3,4-d][1,3]dioxol-4-yl)methyl)thio)methyl)phosphonic acid (0.26 g, 0.48 mmol) as a solid.
Step I. Preparation of (((((((3aS,4S,6R,6aR)-6-(6-chloro-5-cyano-4-(((1s,3S)-3-fluorocyclobutyl)amino)-1H-pyrrolo[2,3-b]pyridin-1-yl)-2,2-dimethyltetrahydrofuro[3,4-d][1,3]dioxol-4-yl)methyl)thio)methyl)phosphoryl)bis(oxy))bis(methylene) bis(2,2-dimethylpropanoate): (((((3aS,4S,6R,6aR)-6-(6-chloro-5-cyano-4-(((1s,3S)-3-fluorocyclobutyl)amino)-1H-pyrrolo[2,3-b]pyridin-1-yl)-2,2-dimethyltetrahydrofuro[3,4-d][1,3]dioxol-4-yl)methyl)thio)methyl)phosphonic acid (225.mg, 0.41 mmol) was dissolved in NMP (0.5 mL) and successively treated with N,N-diisopropylethylamine (0.36 mL, 2.1 mmol) and chloromethyl pivalate (310 mg, 2.1 mmol). The solution was stirred at 70° C. for 18 h. The solution was cooled and partitioned between EtOAc (10 mL) and water (10 mL). The aqueous separation was extracted with EtOAc (2×). The combined organic separations were washed with brine, dried with MgSO4, filtered and concentrated to give an oily residue. The residue was purified by column chromatography, 0 to 50% (3:1 EtOAc:EtOH)/hexanes, 10 g SiO2 cartridge to give (((((((3aS,4S,6R,6aR)-6-(6-chloro-5-cyano-4-(((1s,3S)-3-fluorocyclobutyl)amino)-1H-pyrrolo[2,3-b]pyridin-1-yl)-2,2-dimethyltetrahydrofuro[3,4-d][1,3]dioxol-4-yl)methyl)thio)methyl)phosphoryl)bis(oxy))bis(methylene) bis(2,2-dimethylpropanoate) (238 mg, 0.31 mmol, 75% yield) as an oil. LCMS (ESI)+m/z 775 (M+H).
Step J. Preparation of (((((((3aS,4S,6R,6aR)-6-(6-chloro-5-cyano-4-(((1s,3S)-3-fluorocyclobutyl)amino)-1H-pyrrolo[2,3-b]pyridin-1-yl)-2,2-dimethyltetrahydrofuro[3,4-d][1,3]dioxol-4-yl)methyl)sulfonyl)methyl)phosphoryl)bis(oxy))bis(methylene) bis(2,2-dimethylpropanoate): 3-Chloroperbenzoic acid (159 mg, 0.64 mmol) was added to a solution of (((((((3aS,4S,6R,6aR)-6-(6-chloro-5-cyano-4-(((1s,3S)-3-fluorocyclobutyl)amino)-1H-pyrrolo[2,3-b]pyridin-1-yl)-2,2-dimethyltetrahydrofuro[3,4-d][1,3]dioxol-4-yl)methyl)thio)methyl)phosphoryl)bis(oxy))bis(methylene) bis(2,2-dimethylpropanoate) (238 mg, 0.31 mmol) in DCM (1 mL), chilled in an ice-water bath. After 90 minutes, the solution was injected onto a 10 g SiO2 cartridge and eluted with a gradient of 0 to 50% (3:1 EtOAc:EtOH)/hexanes to give (((((((3aS,4S,6R,6aR)-6-(6-chloro-5-cyano-4-(((1s,3S)-3-fluorocyclobutyl)amino)-1H-pyrrolo[2,3-b]pyridin-1-yl)-2,2-dimethyltetrahydrofuro[3,4-d][1,3]dioxol-4-yl)methyl)sulfonyl)methyl)phosphoryl)bis(oxy))bis(methylene) bis(2,2-dimethylpropanoate) (193 mg, 0.24 mmol) as a green colored oil. LCMS ESI (+) m/z 807 (M+H).
Step K. Preparation of (((((((2S,3S,4R,5R)-5-(6-chloro-5-cyano-4-(((1s,3S)-3-fluorocyclobutyl)amino)-1H-pyrrolo[2,3-b]pyridin-1-yl)-3,4-dihydroxytetrahydrofuran-2-yl)methyl)sulfonyl)methyl)phosphoryl)bis(oxy))bis(methylene) bis(2,2-dimethylpropanoate): (((((((3aS,4S,6R,6aR)-6-(6-chloro-5-cyano-4-(((1s,3S)-3-fluorocyclobutyl)amino)-1H-pyrrolo[2,3-b]pyridin-1-yl)-2,2-dimethyltetrahydrofuro[3,4-d][1,3]dioxol-4-yl)methyl)sulfonyl)methyl)phosphoryl)bis(oxy))bis(methylene) bis(2,2-dimethylpropanoate) (192 mg, 0.24 mmol) was stirred in 80% (v/v) aqueous formic acid (0.5 mL, 0.24 mmol) and acetonitrile (0.5 mL). When the acetonide was absent by LC/MS analysis, the mixture was concentrated and co-evaporated with methanol (2×). The dark brown oil was purified by column chromatography, 0 to 50% (3:1 EtOAc:EtOH)/hexanes to give a dark yellow oil. This was further purified by HPLC, 5 to 95% MeCN/H2O w/0.1% TFA to give (((((((2S,3S,4R,5R)-5-(6-chloro-5-cyano-4-(((1s,3S)-3-fluorocyclobutyl)amino)-1H-pyrrolo[2,3-b]pyridin-1-yl)-3,4-dihydroxytetrahydrofuran-2-yl)methyl)sulfonyl)methyl)phosphoryl)bis(oxy))bis(methylene) bis(2,2-dimethylpropanoate) as a bright yellow colored foam. LCMS ESI (+) m/z 767 (M+H).
1H NMR (400 MHz, CDCl3, δ): 7.28 (d, 1H), 6.56 (d, 1H), 6.13 (broad s, 1H), 5.75-5.68 (m, 2H), 5.59 (d, 2H), 5.51-5.43 (d, 1H), 5.02-4.85 (m, 1H), 4.61-4.53 (broad s, 1H), 4.50 (s, 2H), 4.45-2.21 (broad s, 1H), 4.20-4.09 (m, 2H), 4.06-3.91 (m, 2H), 3.83-3.66 (m, 2H), 3.10-3.05 (m, 2H), 2.38-2.33 (m, 2H), 1.22 (s, 9H), 1.17 (s, 9H); 19F NMR (376 MHz, CDCl3, δ): −168.15; 31P NMR (162 MHz, CDCl3, δ): 11.60.
Step A: Preparation of 4-chloro-5-cyano-1H-pyrrolo[2,3-b]pyridine 7-oxide: A suspension of 4-chloro-1H-Pyrrolo[2,3-b]pyridine-5-carbonitrile (10.0 g, 56.3 mmol) in ethyl acetate (150 mL) was added 3-chloroperbenzoic acid (18.9 g, 84.5 mmol) at ambient temperature. After addition, the reaction mixture was stirred at 52° C. (bath) for 3 hours. After cooling to ambient temperature, hexane (110 mL) was added and the mixture was stirred at ambient temperature for 10 minutes. Solid was collected by filtration, washed with MTBE and dried to give 4-chloro-7-oxo-1H-pyrrolo[2,3-b]pyridine-5-carbonitrile (8.2 g, 75%) as a solid. LCMS ESI (+) m/z 194 (M+H).
Step B: Preparation of 4,6-dichloro-1H-pyrrolo[2,3-b]pyridine-5-carbonitrile: A suspension of 4-chloro-7-oxo-1H-pyrrolo[2,3-b]pyridine-5-carbonitrile (8.2 g, 42.4 mmol) in NMP (80 mL) was added phosphorus (V) oxychloride (7.9 mL, 84.7 mmol) at 0° C. After addition, the reaction mixture was stirred at 0° C. for 1 hour. Ice-water (300 mL) was added and the mixture was stirred at ambient temperature for 30 minutes. Solid was collected by filtration, washed with water and dried to give 4,6-dichloro-1H-pyrrolo[2,3-b]pyridine-5-carbonitrile (9.0 g, 99%) as a pink solid. LCMS ESI (−) m/z 210 (M−H).
Step C: Preparation of 6-chloro-4-(cyclopentylamino)-1H-pyrrolo[2,3-b]pyridine-5-carbonitrile: A mixture of triethyl amine (11.7 mL, 84.4 mmol), cyclopentanamine (10.8 g, 126.6 mmol) and 4,6-dichloro-1H-pyrrolo[2,3-b]pyridine-5-carbonitrile (8.95 g, 42.2 mmol) in NMP (40 mL) was stirred at 100° C. for 2 hours. After cooling to ambient temperature, water (200 mL) was added and stirred at ambient temperature for 30 minutes. Solid was collected by filtration and washed with water and dried. The resulting solid was suspended in IPA (60 mL) and stirred at ambient temperature for 30 minutes. Solid was collected by filtration, washed with IPA (20 mL) and dried to give 6-chloro-4-(cyclopentylamino)-1H-pyrrolo[2,3-b]pyridine-5-carbonitrile (9.3 g, 85%) as a solid. LCMS ESI (+) m/z 261 (M+H).
Step D: Preparation of 6-chloro-4-(cyclopentylamino)-1-((3aR,4R,6R,6aR)-6-(hydroxymethyl)-2,2-dimethyltetrahydrofuro[3,4-d][1,3]dioxol-4-yl)-1H-pyrrolo[2,3-b]pyridine-5-carbonitrile: (3aR,6R,6aR)-6-[[tert-butyl(dimethyl)silyl]oxymethyl]-2,2-dimethyl-3a,4,6,6a-tetrahydrofuro[3,4-d][1,3]dioxol-4-ol (5.7 g, 18.7 mmol) and carbon tetrachloride (1.99 mL, 20.6 mmol) in toluene (50 mL) and cooled to −10° C. Tris(dimethylamino)phosphine (3.6 mL, 19.7 mmol) was added slowly at −10° C. After addition, the mixture was stirred at 0˜−10° C. for 1 hour. Water (50 mL) was added. The organic layer was separated, dried (sodium sulfate), filtered and concentrated under reduced pressure to give tert-butyl(((3aR,4R,6R,6aR)-6-chloro-2,2-dimethyltetrahydrofuro[3,4-d][1,3]dioxol-4-yl)methoxy)dimethylsilane. The residue obtained was dissolved in acetonitrile (10 mL) which was used directly in the next step.
In a separate round bottom flask, 6-chloro-4-(cyclopentylamino)-1H-pyrrolo[2,3-b]pyridine-5-carbonitrile (2.44 g, 9.4 mmol) in acetonitrile (25 mL) was cooled to 0° C. and 60% sodium hydride (0.77 g, 19.2 mmol) was added. After addition, the mixture was warmed to ambient temperature and stirred at ambient temperature for 1 hour. The ribose mixture prepared above was added at ambient temperature and the reaction mixture was stirred at ambient temperature for 20 hours. Ice-water (30 mL) and MTBE (30 mL) were added. The organic layer was separated, washed with brine, dried (sodium sulfate) and concentrated under reduced pressure. The residue obtained was dissolved in THF (10 mL) and tetrabutyl ammonium fluoride (1.0 M in THF) (21.5 mL, 21.5 mmol) was added at ambient temperature and stirred at ambient temperature for 1 hour. Saturated sodium bicarbonate solution (20 mL) and ethyl acetate (20 mL) were added. The organic layer was separated, dried (sodium sulfate), filtered and concentrated under reduced pressure. The residue obtained was purified by flash chromatography on silica gel 5:1 DCM/ethyl acetate to give 1-[(3aR,4R,6R,6aR)-6-(hydroxymethyl)-2,2-dimethyl-3a,4,6,6a-tetrahydrofuro[3,4-d][1,3]dioxol-4-yl]-6-chloro-4-(cyclopentylamino)pyrrolo[2,3-b]pyridine-5-carbonitrile (2.27 g, 56%) as a solid. LCMS ESI (+) m/z 433 (M+H).
Step E: Preparation of diethyl (((((3aS,4S,6R,6aR)-6-(6-chloro-5-cyano-4-(cyclopentylamino)-1H-pyrrolo[2,3-b]pyridin-1-yl)-2,2-dimethyltetrahydrofuro[3,4-d][1,3]dioxol-4-yl)methyl)thio)methyl)phosphonate: 1-[(3aR,4R,6R,6aR)-6-(hydroxymethyl)-2,2-dimethyl-3a,4,6,6a-tetrahydrofuro[3,4-d][1,3]dioxol-4-yl]-6-chloro-4-(cyclopentylamino)pyrrolo[2,3-b]pyridine-5-carbonitrile (0.50 g, 1.2 mmol) and triethylamine (0.32 mL, 2.3 mmol) in dichloromethane (5.8 mL) was treated with methanesulfonyl chloride (0.18 mL, 2.3 mmol), then the mixture was stirred at ambient temperature for 2 hours. The reaction was quenched with saturated ammonium chloride solution. The aqueous separation was extracted with DCM (2×). The combined organic separations were washed with brine, then dried with MgSO4, filtered and concentrated to yield an orange oil. The oil was dissolved in DMF (8 mL), 2-((diethoxyphosphoryl)methyl)isothiouronium 4-methylbenzenesulfonate (2.1 g, 5.3 mmol) and 21% sodium ethoxide in ethanol (3.9 mL, 10.4 mmol) were added at ambient temperature. The reaction mixture was stirred at ambient temperature for overnight. The solution was quenched with water and partitioned with ethyl acetate. The aqueous separation was extracted with ethyl acetate (3×). The combined organic separations were washed with brine, dried with MgSO4, filtered and then concentrated. The residue obtained was purified by flash chromatography on silica gel, 0 to 50% (3:1 EtOAc:EtOH)/hexanes to give diethyl (((((3aS,4S,6R,6aR)-6-(6-chloro-5-cyano-4-(cyclopentylamino)-1H-pyrrolo[2,3-b]pyridin-1-yl)-2,2-dimethyltetrahydrofuro[3,4-d][1,3]dioxol-4-yl)methyl)thio)methyl)phosphonate (0.44 g, 64%) as an oil. LCMS ESI (+) m/z 599 (M+H).
Step F: Preparation of (((((3aS,4S,6R,6aR)-6-(6-chloro-5-cyano-4-(cyclopentylamino)-1H-pyrrolo[2,3-b]pyridin-1-yl)-2,2-dimethyltetrahydrofuro[3,4-d][1,3]dioxol-4-yl)methyl)thio)methyl)phosphonic acid: To a solution of diethyl (((((3aS,4S,6R,6aR)-6-(6-chloro-5-cyano-4-(cyclopentylamino)-1H-pyrrolo[2,3-b]pyridin-1-yl)-2,2-dimethyltetrahydrofuro[3,4-d][1,3]dioxol-4-yl)methyl)thio)methyl)phosphonate (9.5 g, 15.9 mmol) in dichloromethane (50 mL) was added 2,6-lutidine (12.9 mL, 111 mmol) and bromotrimethylsilane (14.7 mL, 111 mmol) at ambient temperature. The reaction mixture was stirred at this temperature for 18 hours. The reaction mixture was concentrated under reduced pressure. The residue was co-evaporated with methanol (3×) to give a light yellow solid. Saturated potassium hydrogen sulfate solution (30 mL) and ethyl acetate (50 mL) were added. The organic layer was separated, washed with 10% potassium hydrogen sulfate, dried (sodium sulfate), filtered and concentrated under reduced pressure to give (((((3aS,4S,6R,6aR)-6-(6-chloro-5-cyano-4-(cyclopentylamino)-1H-pyrrolo[2,3-b]pyridin-1-yl)-2,2-dimethyltetrahydrofuro[3,4-d][1,3]dioxol-4-yl)methyl)thio)methyl)phosphonic acid (8.4 g, 15 mmol, 98% yield) as a solid.
Step G: Preparation of (((((((3aS,4S,6R,6aR)-6-(6-chloro-5-cyano-4-(cyclopentylamino)-1H-pyrrolo[2,3-b]pyridin-1-yl)-2,2-dimethyltetrahydrofuro[3,4-d][1,3]dioxol-4-yl)methyl)thio)methyl)phosphoryl)bis(oxy))bis(methylene) bis(3-methylbutanoate): To the solution of (((((3aS,4S,6R,6aR)-6-(6-chloro-5-cyano-4-(cyclopentylamino)-1H-pyrrolo[2,3-b]pyridin-1-yl)-2,2-dimethyltetrahydrofuro[3,4-d][1,3]dioxol-4-yl)methyl)thio)methyl)phosphonic acid (50 mg, 0.09 mmol) in DMF (2 mL) was added DIEA (59.5 mg, 0.46 mmol) and tetrabutylammonium bromide (0.77 mg). Then chloromethyl 3-methylbutanoate (69 mg, 0.46 mmol) was added. The mixture was stirred for 24 h at 52° C. The cooled reaction mixture was quenched with MTBE/EtOAc (1/1) and water. The separated organic layer was concentrated to dryness under vacuum. The residue was purified by PTLC plate to give (((((((3aS,45,6R,6aR)-6-(6-chloro-5-cyano-4-(cyclopentylamino)-1H-pyrrolo[2,3-b]pyridin-1-yl)-2,2-dimethyltetrahydrofuro[3,4-d][1,3]dioxol-4-yl)methyl)thio)methyl)phosphoryl)bis(oxy))bis(methylene) bis(3-methylbutanoate) (40 mg, 0.05 mmol, 56% yield).
Step H. Preparation of (((((((3aS,4S,6R,6aR)-6-(6-chloro-5-cyano-4-(cyclopentylamino)-1H-pyrrolo[2,3-b]pyridin-1-yl)-2,2-dimethyltetrahydrofuro[3,4-d][1,3]dioxol-4-yl)methyl)sulfonyl)methyl)phosphoryl)bis(oxy))bis(methylene) bis(3-methylbutanoate): To the solution of (((((((3aS,4S,6R,6aR)-6-(6-chloro-5-cyano-4-(cyclopentylamino)-1H-pyrrolo[2,3-b]pyridin-1-yl)-2,2-dimethyltetrahydrofuro[3,4-d][1,3]dioxol-4-yl)methyl)thio)methyl)phosphoryl)bis(oxy))bis(methylene) bis(3-methylbutanoate) (32.7 mg, 0.04 mmol) in MTBE (2 mL) was added m-CPBA (17.21 mg, 0.08 mmol). The mixture was stirred for 2 hr at room temperature. The reaction was completed and extracted with MTBE. The combined organic layer was concentrated under vacuum. The residue was purified by PTLC plate to give (((((((3aS,4S,6R,6aR)-6-(6-chloro-5-cyano-4-(cyclopentylamino)-1H-pyrrolo[2,3-b]pyridin-1-yl)-2,2-dimethyltetrahydrofuro[3,4-d][1,3]dioxol-4-yl)methyl)thio)methyl)phosphoryl)bis(oxy))bis(methylene) bis(3-methylbutanoate) (24 mg, 0.027 mmol, 63% yield).
Step I. Preparation of (((((((2S,3S,4R,5R)-5-(6-chloro-5-cyano-4-(cyclopentylamino)-1H-pyrrolo[2,3-b]pyridin-1-yl)-3,4-di hydroxytetrahydrofuran-2-yl)methyl)sulfonyl)methyl)phosphoryl)bis(oxy))bis(methylene) bis(3-methylbutanoate): (((((((3aS,4S,6R,6aR)-6-(6-chloro-5-cyano-4-(cyclopentylamino)-1H-pyrrolo[2,3-b]pyridin-1-yl)-2,2-dimethyltetrahydrofuro[3,4-d][1,3]dioxol-4-yl)methyl)thio)methyl)phosphoryl)bis(oxy))bis(methylene) bis(3-methylbutanoate) (24 mg, 0.03 mmol) was treated with 80% (v/v) aqueous formic acid (3 mL). The mixture was stirred for 3 h at room temperature and concentrated to dryness under vacuum. The residue was purified by prep-HPLC to give (((((((2S,3S,4R,5R)-5-(6-chloro-5-cyano-4-(cyclopentylamino)-1H-pyrrolo[2,3-b]pyridin-1-yl)-3,4-dihydroxytetrahydrofuran-2-yl)methyl)sulfonyl)methyl)phosphoryl)bis(oxy))bis(methylene) bis(3-methylbutanoate) (17.6 mg, 0.02 mmol, 67% yield). LCMS ESI(+) m/z 763. 1H NMR (400 MHz, CD3OD, δ): 7.41 (d, 1H), 6.84 (d, 1H), 6.22 (d, 1H), 5.65 (d, 2H), 5.47 (dd, 1H), 5.39 (dd, 1H), 4.65-4.55 (m, 1H), 4.44-4.21 (m, 2H), 4.31-4.29 (m, 1H), 4.15-4.03 (m, 3H), 3.53 (d, 1H), 2.25 (d, 2H), 2.20-1.90 (m, 6H) 1.89-1.60 (m, 6H), 0.94 (d, 6H), 0.90 (d, 6H); 31P NMR (162 MHz, CD3OD, δ): 12.82.
Step A: Preparation of 4-chloro-5-cyano-1H-pyrrolo[2,3-b]pyridine 7-oxide: A suspension of 4-chloro-1H-Pyrrolo[2,3-b]pyridine-5-carbonitrile (10.0 g, 56.3 mmol) in ethyl acetate (150 mL) was added 3-chloroperbenzoic acid (18.9 g, 84.5 mmol) at ambient temperature. After addition, the reaction mixture was stirred at 52° C. (bath) for 3 hours. After cooling to ambient temperature, hexane (110 mL) was added and the mixture was stirred at ambient temperature for 10 minutes. Solid was collected by filtration, washed with MTBE and dried to give 4-chloro-7-oxo-1H-pyrrolo[2,3-b]pyridine-5-carbonitrile (8.2 g, 75%) as a solid. LCMS ESI (+) m/z 194 (M+H).
Step B: Preparation of 4,6-dichloro-1H-pyrrolo[2,3-b]pyridine-5-carbonitrile: A suspension of 4-chloro-7-oxo-1H-pyrrolo[2,3-b]pyridine-5-carbonitrile (8.2 g, 42.4 mmol) in NMP (80 mL) was added phosphorus (V) oxychloride (7.9 mL, 84.7 mmol) at 0° C. After addition, the reaction mixture was stirred at 0° C. for 1 hour. Ice-water (300 mL) was added and the mixture was stirred at ambient temperature for 30 minutes. Solid was collected by filtration, washed with water and dried to give 4,6-dichloro-1H-pyrrolo[2,3-b]pyridine-5-carbonitrile (9.0 g, 99%) as a pink solid. LCMS ESI (−) m/z 210 (M−H).
Step C: Preparation of 4,6-dichloro-1-((3aR,4R,6R,6aR)-6-(hydroxymethyl)-2,2-dimethyltetrahydrofuro[3,4-d][1,3]dioxol-4-yl)-1H-pyrrolo[2,3-b]pyridine-5-carbonitrile: In a dry 100 mL flask, CCl4 (6.8 mL, 70.5 mmol) and (3aR,6R,6aR)-6-(((tert-butyldimethylsilyl)oxy)methyl)-2,2-dimethyltetrahydrofuro[3,4-d][1,3]dioxol-4-ol (20.57 g, 67.58 mmol) was dissolved in toluene (100 mL) and cooled in a −10° C. bath. Tris(dimethylamino)phosphine (12.8 mL, 70.5 mmol) was added slowly at −10° C. After addition, the mixture was stirred with warming to 0° C. over 1 hour. Water (50 mL) and MTBE (20 mL) were added. The organic layer was separated, dried (sodium sulfate), filtered and concentrated under reduced pressure. The residue obtained was dissolved in acetonitrile (20 mL) which was used directly in the next step.
In a separate flask, 4,6-dichloro-1H-pyrrolo[2,3-b]pyridine-5-carbonitrile (6.23 g, 29.38 mmol) in acetonitrile (80.387 mL) was added sodium hydride, 60% dispersion in mineral oil (1.76 g, 44.07 mmol) at ambient temperature. The mixture was stirred at ambient temperature for 2 h. The ribose mixture prepared above was added at ambient temperature, and the reaction mixture was stirred at ambient temperature for 20 hours. Ice-water (100 mL) was added, then MTBE (200 mL) was added. The organic layer was separated, washed with brine, dried (sodium sulfate) and concentrated under reduced pressure. The residue obtained was dissolved in THF (10 mL) and Et3N.3HF (9.58 mL, 58.8 mmol) was added and then stirred at ambient temperature for 5 hours. Saturated sodium bicarbonate solution (20 mL) and ethyl acetate (50 mL) were added. The organic layer was separated, dried (sodium sulfate), filtered and concentrated under reduced pressure. The residue obtained was purified by flash chromatography on silica gel 1:1 hexane/ethyl acetate to give 4,6-dichloro-1-((3aR,4R,6R,6aR)-6-(hydroxymethyl)-2,2-dimethyltetrahydrofuro[3,4-d][1,3]dioxol-4-yl)-1H-pyrrolo[2,3-b]pyridine-5-carbonitrile (7.9 g, 20.6 mmol, 70% yield) as white solid. LCMS ESI(+) m/z 385 (M+H).
Step D. Preparation of 6-chloro-4-(((1s,3S)-3-fluorocyclobutyl)amino)-1-((3aR,4R,6R,6aR)-6-(hydroxymethyl)-2,2-dimethyltetrahydrofuro[3,4-d][1,3]dioxol-4-yl)-1H-pyrrolo[2,3-b]pyridine-5-carbonitrile: A mixture of Et3N (3.77 mL, 27.1 mmol), (1s,3s)-3-fluorocyclobutan-1-amine hydrochloride (1.47 g, 11.7 mmol) and 4,6-dichloro-1-((3aR,4R,6R,6aR)-6-(hydroxymethyl)-2,2-dimethyltetrahydrofuro[3,4-d][1,3]dioxol-4-yl)-1H-pyrrolo[2,3-b]pyridine-5-carbonitrile (3.47 g, 9 mmol) in sec-butanol (30 mL) was stirred at 102° C. for 18 h. After being cooled to ambient temperature, the solvent was removed under reduced pressure. The resulting solid was partitioned between water (30 mL) and ethyl acetate (50 mL). The organic layer was separated, washed with brine, dried (sodium sulfate), filtered and concentrated under reduced pressure. The resulting solid was suspended in MTBE (30 mL) and stirred for 10 minutes. Solids were collected by filtration and dried to give 6-chloro-4-(((1s,3S)-3-fluorocyclobutyl)amino)-1-((3aR,4R,6R,6aR)-6-(hydroxymethyl)-2,2-dimethyltetrahydrofuro[3,4-d][1,3]dioxol-4-yl)-1H-pyrrolo[2,3-b]pyridine-5-carbonitrile (2.3 g, 5.26 mmol, 58% yield) as a solid. LCMS ESI(+) m/z 437 (M+H).
Step E. Preparation of ((3aR,4R,6R,6aR)-6-(6-chloro-5-cyano-4-4(1s,3S)-3-fluorocyclobutyl)amino)-1H-pyrrolo[2,3-b]pyridin-1-yl)-2,2-dimethyltetrahydrofuro[3,4-d][1,3]dioxol-4-yl)methyl methanesulfonate: To a solution of 6-chloro-4-(((1s,3S)-3-fluorocyclobutyl)amino)-1-((3aR,4R,6R,6aR)-6-(hydroxymethyl)-2,2-dimethyltetrahydrofuro[3,4-d][1,3]dioxol-4-yl)-1H-pyrrolo[2,3-b]pyridine-5-carbonitrile (10.94 g, 25 mmol) in DCM (50 mL) was added methanesulfonyl chloride (2.33 mL, 30.1 mmol) at 0° C. The reaction mixture was stirred at 0° C. for 2 hours. Water (20 mL) and MTBE (30 mL) were added. The organic layer was separated, washed with brine, dried (sodium sulfate), filtered and concentrated under reduced pressure to give ((3aR,4R,6R,6aR)-6-(6-chloro-5-cyano-4-(((1s,3S)-3-fluorocyclobutyl)amino)-1H-pyrrolo[2,3-b]pyridin-1-yl)-2,2-dimethyltetrahydrofuro[3,4-d][1,3]dioxol-4-yl)methyl methanesulfonate (12.8 g, 24.9 mmol, 99% yield) as an oil, which was used without further purification.
Step F. Preparation of S-(((3aS,4S,6R,6aR)-6-(6-chloro-5-cyano-4-(((1s,3S)-3-fluorocyclobutyl)amino)-1H-pyrrolo[2,3-b]pyridin-1-yl)-2,2-dimethyltetrahydrofuro[3,4-d][1,3]dioxol-4-yl)methyl) ethanethioate: To a solution of ((3aR,4R,6R,6aR)-6-(6-chloro-5-cyano-4-(((1s,3S)-3-fluorocyclobutyl)amino)-1H-pyrrolo[2,3-b]pyridin-1-yl)-2,2-dimethyltetrahydrofuro[3,4-d][1,3]dioxol-4-yl)methyl methanesulfonate (12.8 g, 24.9 mmol) in DMF (60 mL) was added tetrabutylammonium bromide (0.8 g, 2.49 mmol) and cesium carbonate (16.2 g, 49.7 mmol) at ambient temperature. The reaction mixture was stirred for 5 minutes, then thiolacetic acid (3.55 mL, 49.7 mmol) was added. The mixture was stirred at ambient temperature for 18 hours. Water (30 mL) and MTBE (30 mL) were added. The organic layer was separated, washed with brine, dried (sodium sulfate), filtered and concentrated under reduced pressure. The residue obtained was purified by flash chromatography on silica gel 2:1 hexane/ethyl acetate to give S-(((3aS,4S,6R,6aR)-6-(6-chloro-5-cyano-4-(((1s,3S)-3-fluorocyclobutyl)amino)-1H-pyrrolo[2,3-b]pyridin-1-yl)-2,2-dimethyltetrahydrofuro[3,4-d][1,3]dioxol-4-yl)methyl) ethanethioate (11.89 g, 24 mmol, 96% yield) as a solid. LCMS ESI(+) m/z 495 (M+H).
Step G. Preparation of diethyl (((((3aS,4S,6R,6aR)-6-(6-chloro-5-cyano-4-(((1s,3S)-3-fluorocyclobutyl)amino)-1H-pyrrolo[2,3-b]pyridin-1-yl)-2,2-dimethyltetrahydrofuro[3,4-d][1,3]dioxol-4-yl)methyl)thio)methyl)phosphonate: To a suspension of S-(((3aS,4S,6R,6aR)-6-(6-chloro-5-cyano-4-(((1s,3S)-3-fluorocyclobutyl)amino)-1H-pyrrolo[2,3-b]pyridin-1-yl)-2,2-dimethyltetrahydrofuro[3,4-d][1,3]dioxol-4-yl)methyl) ethanethioate (1.07 g, 2.16 mmol) in degassed ethanol (15 mL) was added a solution of sodium ethoxide, 21% in ethanol (1.6 mL, 4.32 mmol) at ambient temperature. The mixture was stirred at ambient temperature for 5 minutes. (diethoxyphosphoryl)methyl 4-methylbenzenesulfonate (0.84 g, 2.59 mmol) was added at ambient temperature. The reaction mixture was stirred in a 56° C. bath for 2 hours. After being cooled to ambient temperature, the ethanol was removed under reduced pressure. Ethyl acetate (50 mL) and brine (40 mL) were added. The organic layer was separated, washed with brine, dried (sodium sulfate), filtered and concentrated under reduced pressure. The residue obtained was purified by flash chromatography on silica gel, eluting with ethyl acetate to give diethyl (((((3aS,4S,6R,6aR)-6-(6-chloro-5-cyano-4-(((1s,3S)-3-fluorocyclobutyl)amino)-1H-pyrrolo[2,3-b]pyridin-1-yl)-2,2-dimethyltetrahydrofuro[3,4-d][1,3]dioxol-4-yl)methyl)thio)methyl)phosphonate (1.17 g, 1.94 mmol, 90% yield) as a solid. LCMS ESI(+) m/z 603 (M+H).
Step H. Preparation of (((((3aS,4S,6R,6aR)-6-(6-chloro-5-cyano-4-(((1s,3S)-3-fluorocyclobutyl)amino)-1H-pyrrolo[2,3-b]pyridin-1-yl)-2,2-dimethyltetrahydrofuro[3,4-d][1,3]dioxol-4-yl)methyl)thio)methyl)phosphonic acid: To a solution of diethyl (((((3aS,4S,6R,6aR)-6-(6-chloro-5-cyano-4-(((1s,3S)-3-fluorocyclobutyl)amino)-1H-pyrrolo[2,3-b]pyridin-1-yl)-2,2-dimethyltetrahydrofuro[3,4-d][1,3]dioxol-4-yl)methyl)thio)methyl)phosphonate (0.28 g, 0.46 mmol) in dichloromethane (2 mL) was added 2,6-lutidine (0.38 mL, 3.25 mmol) and bromotrimethylsilane (0.43 mL, 3.25 mmol) at ambient temperature and the reaction mixture was stirred at this temperature for 18 hours. The reaction mixture was concentrated under reduced pressure. The residue was co-evaporated with methanol three times to give a light yellow solid. Saturated potassium hydrogen sulfate solution (30 mL) and ethyl acetate (50 mL) were added. The organic layer was separated, washed with 10% potassium hydrogen sulfate, dried (sodium sulfate), filtered and concentrated under reduced pressure to give (((((3aS,4S,6R,6aR)-6-(6-chloro-5-cyano-4-(((1s,3S)-3-fluorocyclobutyl)amino)-1H-pyrrolo[2,3-b]pyridin-1-yl)-2,2-dimethyltetrahydrofuro[3,4-d][1,3]dioxol-4-yl)methyl)thio)methyl)phosphonic acid (0.26 g, 0.48 mmol) as a solid.
Step I. Preparation of (((((((3aS,4S,6R,6aR)-6-(6-chloro-5-cyano-4-(((1s,3S)-3-fluorocyclobutyl)amino)-1H-pyrrolo[2,3-b]pyridin-1-yl)-2,2-dimethyltetrahydrofuro[3,4-d][1,3]dioxol-4-yl)methyl)thio)methyl)phosphoryl)bis(oxy))bis(methylene) dipentanoate: A solution of chloromethyl pentanoate (275 mg, 1.8 mmol), tetrabutylammonium bromide (0.025 eq.) and (((((3aS,4S,6R,6aR)-6-(6-chloro-5-cyano-4-(((1s,3S)-3-fluorocyclobutyl)amino)-1H-pyrrolo[2,3-b]pyridin-1-yl)-2,2-dimethyltetrahydrofuro[3,4-d][1,3]dioxol-4-yl)methyl)thio)methyl)phosphonic acid (100 mg, 0.18 mmol) in DMF (5 mL) was stirred in a 52° C. bath for 24 hours. After cooling to ambient temperature, water (3 mL), saturated potassium hydrogen sulfate (3 mL) and 1:1 MTBE/ethyl acetate (60 mL) were added. The organic layer was separated, dried (sodium sulfate), filtered and concentrated under reduced pressure. The residue obtained was purified by flash chromatography on silica gel ethyl acetate to 2:1 ethyl acetate/PE to give (((((((3aS,4S,6R,6aR)-6-(6-chloro-5-cyano-4-(((1s,3S)-3-fluorocyclobutyl)amino)-1H-pyrrolo[2,3-b]pyridin-1-yl)-2,2-dimethyltetrahydrofuro[3,4-d][1,3]dioxol-4-yl)methyl)thio)methyl)phosphoryl)bis(oxy))bis(methylene) dipentanoate (68 mg, 0.088 mmol, 48% yield).
Step J. Preparation of (((((((3aS,4S,6R,6aR)-6-(6-chloro-5-cyano-4-(((1s,3S)-3-fluorocyclobutyl)amino)-1H-pyrrolo[2,3-b]pyridin-1-yl)-2,2-dimethyltetrahydrofuro[3,4-d][1,3]dioxol-4-yl)methyl)sulfonyl)methyl)phosphoryl)bis(oxy))bis(methylene) dipentanoate: To a solution of (((((((3aS,45,6R,6aR)-6-(6-chloro-5-cyano-4-(((1s,3S)-3-fluorocyclobutyl)amino)-1H-pyrrolo[2,3-b]pyridin-1-yl)-2,2-dimethyltetrahydrofuro[3,4-d][1,3]dioxol-4-yl)methyl)thio)methyl)phosphoryl)bis(oxy))bis(methylene) dipentanoate (68 mg, 0.09 mmol) in MTBE (5 mL), chilled in a 0° C. bath, was added 3-chloroperbenzoic acid (2.5 eq.). The mixture was stirred at this temperature for 3 hours. The mixture was diluted with EtOAc (50 mL) and H2O (5 mL) solution. The organic layer was separated, washed with brine, dried (sodium sulfate), filtered and concentrated under reduced pressure. The residue obtained was purified by PTLC 1:2 hexane/ethyl acetate to give (((((((3aS,4S,6R,6aR)-6-(6-chloro-5-cyano-4-(((1s,3S)-3-fluorocyclobutyl)amino)-1H-pyrrolo[2,3-b]pyridin-1-yl)-2,2-dimethyltetrahydrofuro[3,4-d][1,3]dioxol-4-yl)methyl)sulfonyl)methyl)phosphoryl)bis(oxy))bis(methylene) dipentanoate (35 mg, 0.04 mmol, 49% yield). LCMS ESI (+) m/z 807 (M+H).
Step K. Preparation of (((((((2S,3S,4R,5R)-5-(6-chloro-5-cyano-4-(((1s,3S)-3-fluorocyclobutyl)amino)-1H-pyrrolo[2,3-b]pyridin-1-yl)-3,4-dihydroxytetrahydrofuran-2-yl)methyl)sulfonyl)methyl)phosphoryl)bis(oxy))bis(methylene) dipentanoate: A solution of (((((((3aS,4S,6R,6aR)-6-(6-chloro-5-cyano-4-(((1s,3S)-3-fluorocyclobutyl)amino)-1H-pyrrolo[2,3-b]pyridin-1-yl)-2,2-dimethyltetrahydrofuro[3,4-d][1,3]dioxol-4-yl)methyl)sulfonyl)methyl)phosphoryl)bis(oxy))bis(methylene) dipentanoate (34 mg, 0.04 mmol) in 80% (v/v) aqueous formic acid (3 mL) was stirred at ambient temperature for 3 hours. Solvent was removed under reduced pressure and co-evaporated with ethyl acetate three times. The residue obtained was purified by HPLC to give (((((((2S,3S,4R,5R)-5-(6-chloro-5-cyano-4-(((1s,3S)-3-fluorocyclobutyl)amino)-1H-pyrrolo[2,3-b]pyridin-1-yl)-3,4-dihydroxytetrahydrofuran-2-yl)methyl)sulfonyl)methyl)phosphoryl)bis(oxy))bis(methylene) dipentanoate (14.5 mg, 0.019 mmol, 45% yield). LCMS ESI (+) m/z 767 (M+H). 1H NMR (400 MHz, CD3OD, δ): 7.41 (d, 1H), 6.84 (d, 1H), 6.21 (d, 1H), 5.64 (d, 2H), 5.49 (dd, 1H), 5.35 (dd, 1H), 4.55-4.45 (m, 2H), 4.35-4.20 (m, 2H), 4.39-3.96 (m, 3H), 5.05-4.95 (m, 1H), 3.60-3.42 (m, 1H), 3.15-2.92 (m, 2H), 2.50-2.31 (m, 4H), 2.28-2.20 (m, 2H), 1.60-1.56 (m, 2H), 1.53-1.49 (m, 2H), 1.38-1.30 (m, 4H), 0.94-0.89 (m, 6H); 19F NMR (376 MHz, CD3OD, δ): −170.16.
Step A: Preparation of 6-amino-5-nitronicotinonitrile: To a solution of 5-bromo-3-nitro-aniline (40.0 g, 184.3 mmol), zinc cyanide (32.5 g, 276.5 mmol) and Pd(PPh3)4 (4.26 g, 3.7 mmol) in 1-methyl-2-pyrrolidone (50 mL) in a sealed tube was stirred at 100° C. under for 6 hours. After cooling to ambient temperature, the mixture was diluted with ethyl acetate, filtered through a pad of Celite and was washed with ethyl acetate. The filtrate was washed with brine, dried (sodium sulfate), filtered and concentrated under reduced pressure. The residue obtained was purified by flash chromatography on silica gel to give 6-amino-5-nitro-benzonitrile (16.1 g, 54%) as a solid.
Step B: Preparation of 5,6-diaminonicotinonitrile: A stirred suspension of 6-amino-5-nitro-benzonitrile (12.0 g, 73.6 mmol) and 5% Pt/C (1.2 g) in ethanol (30 mL) was charged with one atmosphere of hydrogen and stirred at ambient temperature for 18 hours. Catalyst was removed by filtering through a pad of Celite and the filtrate was concentrated under reduced pressure to give 5,6-diaminonicotinonitrile (6.9 g, 70% yield) as a solid.
Step C: Preparation of 3H-imidazo[4,5-b]pyridine-6-carbonitrile: To a solution of 5,6-diaminonicotinonitrile (7.0 g, 52.2 mmol) in triethyl orthoformate (100 mL) at ambient temperature was added formic acid (6.3 mL, 52.2 mmol) slowly. After addition, the reaction mixture was stirred at 100° C. for 2 hours. After cooling to ambient temperature, the mixture was concentrated under reduced pressure. The residue obtained was purified by recrystallization from ethyl acetate to give 3H-imidazo[4,5-b]pyridine-6-carbonitrile (6.9 g, 92% yield) as a solid.
Step D: Preparation of 6-cyano-3H-imidazo[4,5-b]pyridine 4-oxide: To a suspension of 3H-imidazo[4,5-b]pyridine-6-carbonitrile (7.4 g, 51.3 mmol) in ethyl acetate (75 mL) was added 3-chloroperbenzoic acid (10.6 g, 61.6 mmol) at 0° C. Then the mixture was stirred at 35° C. for 24 hours. The solid was collected by filtration and dried to give 6-cyano-3H-imidazo[4,5-b]pyridine 4-oxide (6.5 g, 79% yield) as a solid. LCMS ESI (+) m/z 161 (M+H).
Step E: Preparation of 7-chloro-3H-imidazo[4,5-b]pyridine-6-carbonitrile and 5-chloro-3H-imidazo[4,5-b]pyridine-6-carbonitrile: To a suspension of 6-cyano-3H-imidazo[4,5-b]pyridine 4-oxide (6.3 g, 39.3 mmol) in 1-methyl-2-pyrrolidone (60 mL) was added phosphorus (V) oxychloride (4.0 g, 91.3 mmol) dropwise at 0° C. The mixture was stirred at 0° C. for 1 hour. The mixture was poured into ice. Sodium bicarbonate was added to adjust pH to 8. The solid was collected by filtration, washed with water and dried to give a mixture of 7-chloro-3H-imidazo[4,5-b]pyridine-6-carbonitrile and 5-chloro-3H-imidazo[4,5-b]pyridine-6-carbonitrile (2.8 g, 20% yield) as a solid. LCMS ESI (−) m/z 177 (M−H).
Step F: Preparation of 7-chloro-6-cyano-3H-imidazo[4,5-b]pyridine 4-oxide and 5-chloro-6-cyano-3H-imidazo[4,5-b]pyridine 4-oxide: To a suspension of 5-chloro-3H-imidazo[4,5-b]pyridine-6-carbonitrile and 7-chloro-3H-imidazo[4,5-b]pyridine-6-carbonitrile (2.8 g, 7.8 mmol) in ethyl acetate (50 mL) was added 3-chloroperbenzoic acid (3.0 g, 18.8 mmol) at 0° C. Then the mixture was stirred at 35° C. for 24 hours. After cooling to ambient temperature, the solid was collected by filtration and dried to give 7-chloro-6-cyano-3H-imidazo[4,5-b]pyridine 4-oxide and 5-chloro-6-cyano-3H-imidazo[4,5-b]pyridine 4-oxide (2.7 g, 88% yield) as a solid. LCMS ESI (+) m/z 195 (M+H).
Step G: Preparation of 5,7-dichloro-3H-imidazo[4,5-b]pyridine-6-carbonitrile: To a suspension of 7-chloro-6-cyano-3H-imidazo[4,5-b]pyridine 4-oxide and 5-chloro-6-cyano-3H-imidazo[4,5-b]pyridine 4-oxide (2.7 g, 6.94 mmol) in 1-methyl-2-pyrrolidone (40 mL) was added Phosphorus (V) oxychloride (6.0 g, 39.7 mmol) dropwise at 0° C. The mixture was stirred at 0° C. for 1 hour. The mixture was poured into ice. Sodium bicarbonate was added to adjust to pH 8. The solid was collected by filtration and dried to give 5,7-dichloro-3H-imidazo[4,5-b]pyridine-6-carbonitrile (1.64 g, 55% yield) as a solid. LCMS ESI (−) m/z 211 (M−H).
Step H: Preparation of (2R,3R,4R,5R)-2-(acetoxymethyl)-5-(5,7-dichloro-6-cyano-3H-imidazo[4,5-b]pyridin-3-yl)tetrahydrofuran-3,4-diyl diacetate: A mixture of [(2S,3S,4S,5R)-3,4,5-triacetoxytetrahydrofuran-2-yl]methyl acetate (2.9 g, 9.0 mmol), 5,7-dichloro-3H-imidazo[4,5-b]pyridine-6-carbonitrile (1.6 g, 7.5 mmol) and bis(4-nitrophenyl) hydrogen phosphate (0.054 g, 0.15 mmol) were stirred at 90° C. under reduced pressure for 7 hours. After cooling to ambient temperature, the residue obtained was purified by recrystallization from methanol to give (2R,3R,4R,5R)-2-(acetoxymethyl)-5-(5,7-dichloro-6-cyano-3H-imidazo[4,5-b]pyridin-3-yl)tetrahydrofuran-3,4-diyl diacetate (1.6 g, 45% yield) as a solid.
Step I: Preparation of 5-chloro-7-((3,3-difluorocyclobutyl)amino)-3-((2R,3R,4S,5R)-3,4-dihydroxy-5-(hydroxymethyl)tetrahydrofuran-2-yl)-3H-imidazo[4,5-b]pyridine-6-carbonitrile: A solution of (2R,3R,4R,5R)-2-(acetoxymethyl)-5-(5,7-dichloro-6-cyano-3H-imidazo[4,5-b]pyridin-3-yl)tetrahydrofuran-3,4-diyl diacetate (110 mg, 0.23 mmol), 3,3-difluoro cyclobutanamine hydrochloride (40.2 mg, 0.28 mmol) and triethylamine (70.9 mg, 0.7 mmol) in ethanol (6 mL) in a sealed tube was stirred at 50° C. for 16 hours. Then 7 N ammonia in methanol (3 mL) was added and the mixture was stirred at 50° C. for 3 days. After cooling to ambient temperature, solvent was removed under reduced pressure to give 5-chloro-7-((3,3-difluorocyclobutyl)amino)-3-((2R,3R,4S,5R)-3,4-dihydroxy-5-(hydroxymethyl)tetrahydrofuran-2-yl)-3H-imidazo[4,5-b]pyridine-6-carbonitrile (80 mg, 84% yield) which was used for next step directly.
Step J: Preparation of 5-chloro-7-((3,3-difluorocyclobutyl)amino)-3-((3aR,4R,6R,6aR)-6-(hydroxymethyl)-2,2-dimethyltetrahydrofuro[3,4-d][1,3]dioxol-4-yl)-3H-imidazo[4,5-b]pyridine-6-carbonitrile: To a solution of 5-chloro-7-[(3,3-difluorocyclobutyl)amino]-3-[(2R,3R,4S,5R)-3,4-dihydroxy-5-(hydroxymethyl)tetrahydrofuran-2-yl]imidazo[4,5-b]pyridine-6-carbonitrile (80 mg, 0.19 mmol) in acetone (6 mL) was added 2,2-dimethoxy propane (260.5 mg, 2.5 mmol) and TsOH (49.1 mg, 0.285 mmol). The mixture was stirred at ambient temperature for half an hour. The mixture was diluted with ethyl acetate then washed with saturated sodium bicarbonate solution. The organic layer was dried (sodium sulfate), filtered and concentrated under reduced pressure. The residue obtained was purified by flash chromatography on silica gel to give 5-chloro-7-((3,3-difluorocyclobutyl)amino)-3-((3aR,4R,6R,6aR)-6-(hydroxymethyl)-2,2-dimethyltetrahydrofuro[3,4-d][1,3]dioxol-4-yl)-3H-imidazo[4,5-b]pyridine-6-carbonitrile (55 mg, 63% yield) as a solid.
Step K: Preparation of ((3aR,4R,6R,6aR)-6-(5-chloro-6-cyano-7-((3,3-difluorocyclobutyl)amino)-3H-imidazo[4,5-b]pyridin-3-yl)-2,2-dimethyltetrahydrofuro[3,4-d][1,3]dioxol-4-yl)methyl methanesulfonate: To a solution of 5-chloro-7-((3,3-difluorocyclobutyl)amino)-3-((3aR,4R,6R,6aR)-6-(hydroxymethyl)-2,2-dimethyltetrahydrofuro[3,4-d][1,3]dioxol-4-yl)-3H-imidazo[4,5-b]pyridine-6-carbonitrile (55 mg, 0.12 mmol) in pyridine (5 mL) was added methanesulfonyl chloride (69.1 mg, 0.6 mmol) at 0° C. The resulting solution was stirred at ambient temperature for 20 minutes. Then the mixture was warmed to ambient temperature and stirred at this temperature for 2 hours. Pyridine was removed under reduced pressure. Ethyl acetate and brine were added. The organic layer was separated, dried (sodium sulfate), filtered and concentrated under reduced pressure. The residue obtained was purified by flash chromatography on silica gel to give ((3aR,4R,6R,6aR)-6-(5-chloro-6-cyano-7-((3,3-difluorocyclobutyl)amino)-3H-imidazo[4,5-b]pyridin-3-yl)-2,2-dimethyltetrahydrofuro[3,4-d][1,3]dioxol-4-yl)methyl methanesulfonate (53 mg, 82% yield) as an oil.
Step L: Preparation of diethyl (((((3aS,4S,6R,6aR)-6-(5-chloro-6-cyano-7-((3,3-difluorocyclobutyl)amino)-3H-imidazo[4,5-b]pyridin-3-yl)-2,2-dimethyltetrahydrofuro[3,4-d][1,3]dioxol-4-yl)methyl)thio)methyl)phosphonate: To a mixture of 21% sodium ethoxide solution in ethanol (40.5 mg, 0.6 mmol) in DMF (2 mL) was added ((diethoxyphosphoryl)methyl)isothiouronium 4-methylbenzenesulfonate (118.7 mg, 0.3 mmol) at ambient temperature. The mixture was stirred at ambient temperature for 90 minutes. A solution of ((3aR,4R,6R,6aR)-6-(5-chloro-6-cyano-7-((3,3-difluorocyclobutyl)amino)-3H-imidazo[4,5-b]pyridin-3-yl)-2,2-dimethyltetrahydrofuro[3,4-d][1,3]dioxol-4-yl)methyl methanesulfonate (53 mg, 0.1 mmol) in DMF (3 mL) was added and the mixture was stirred at ambient temperature for 3 hours. Ethyl acetate and water were added. The organic later was separated, washed with brine, dried (Na2SO4), filtered and concentrated under reduced pressure. The residue obtained was purified by flash chromatography on silica gel to give (((((3aS,4S,6R,6aR)-6-(5-chloro-6-cyano-7-((3,3-difluorocyclobutyl)amino)-3H-imidazo[4,5-b]pyridin-3-yl)-2,2-dimethyltetrahydrofuro[3,4-d][1,3]dioxol-4-yl)methyl)thio)methyl)phosphonate (42 mg, 68% yield) as a solid.
Step M: Preparation of diethyl (((((3aS,4S,6R,6aR)-6-(5-chloro-6-cyano-7-((3,3-difluorocyclobutyl)amino)-3H-imidazo[4,5-b]pyridin-3-yl)-2,2-dimethyltetrahydrofuro[3,4-d][1,3]dioxol-4-yl)methyl)sulfonyl)methyl)phosphonate: To a solution of (((((3aS,4S,6R,6aR)-6-(5-chloro-6-cyano-7-((3,3-difluorocyclobutyl)amino)-3H-imidazo[4,5-b]pyridin-3-yl)-2,2-dimethyltetrahydrofuro[3,4-d][1,3]dioxol-4-yl)methyl)thio)methyl)phosphonate (42 mg, 0.07 mmol) in acetonitrile (2 mL) and water (2 mL) was added Oxone® (129 mg, 0.21 mmol) at ambient temperature and stirred at this temperature for 3 hours. Ethyl acetate (10 mL) and water (5 mL) were added. The organic layer was separated, dried (sodium sulfate), filtered and concentrated under reduced pressure. The residue obtained was purified by flash chromatography on silica gel to give diethyl (((((3aS,4S,6R,6aR)-6-(5-chloro-6-cyano-7-((3,3-difluorocyclobutyl)amino)-3H-imidazo[4,5-b]pyridin-3-yl)-2,2-dimethyltetrahydrofuro[3,4-d][1,3]dioxol-4-yl)methyl)sulfonyl)methyl)phosphonate (29 mg, 65% yield) as a solid.
Step N: Preparation of (((((2S,3S,4R,5R)-5-(5-chloro-6-cyano-7-((3,3-difluorocyclobutyl)amino)-3H-imidazo[4,5-b]pyridin-3-yl)-3,4-dihydroxytetrahydrofuran-2-yl)methyl)sulfonyl)methyl)phosphonic acid: To a solution of diethyl (((((3aS,4S,6R,6aR)-6-(5-chloro-6-cyano-7-(3,3-difluorocyclobutyl)amino)-3H-imidazo[4,5-b]pyridin-3-yl)-2,2-dimethyltetrahydrofuro[3,4-d][1,3]dioxol-4-yl)methyl)sulfonyl)methyl)phosphonate (29 mg, 0.04 mmol) and 2,6-lutidine (47.5 mg, 0.44 mmol) in DCM (4 mL) was added bromotrimethyl silane (67.9 mg, 0.44 mmol) at ambient and stirred at this temperature overnight. Solvent was removed under reduced pressure and the residue was co-evaporated with acetonitrile twice to give an oil which was dissolved in 80% aqueous HCOOH solution (3 mL). The mixture was stirred at ambient temperature for 2 hours. The mixture was concentrated under reduced pressure and the residue obtained purified by reverse phase HPLC (0.05% TFA, 20% to 80% MeCN/H2O over 15 min) to give (((((2S,3S,4R,5R)-5-(5-chloro-6-cyano-7-((3,3-difluorocyclobutyl)amino)-3H-imidazo[4,5-b]pyridin-3-yl)-3,4-dihydroxytetrahydrofuran-2-yl)methyl)sulfonyl)methyl)phosphonic acid (10.6 mg, 26% yield) as a white solid. LCMS ESI (−) m/z 556 (M−H). 1H NMR (400 MHz, CD3OD, δ): 8.33 (s, 1H), 6.03 (d, 1H), 5.34-5.22 (m, 1H), 4.64 (t, 1H), 4.58-4.50 (m, 1H), 4.37 (t, 1H), 4.12 (dd, 1H), 3.77-3.57 (m, 3H), 3.14-3.04 (m, 2H), 2.87-2.81 92H); 19F NMR (376 MHz, CD3OD, δ): −86.05, −100.51; 31P NMR (162 MHz, CD3OD, 6): 8.32.
Step A: Preparation of 5-chloro-3-((2R,3R,4S,5R)-3,4-dihydroxy-5-(hydroxymethyl)tetrahydrofuran-2-yl)-7-(((R)-1-(2-fluorophenyl)ethyl)amino)-3H-imidazo[4,5-b]pyridine-6-carbonitrile: A solution of (2R,3R,4R,5R)-2-(acetoxymethyl)-5-(5,7-dichloro-6-cyano-3H-imidazo[4,5-b]pyridin-3-yl)tetrahydrofuran-3,4-diyl diacetate (150 mg, 0.32 mmol), (R)-1-(2-fluorophenyl)ethan-1-amine (66.5 mg, 0.48 mmol) and triethylamine (80.5 mg, 0.8 mmol) in ethanol (5 mL) was stirred at 50° C. for 16 hours. Then 7 N ammonia in methanol (5 mL) was added. The mixture was stirred at 50° C. for overnight. After cooling to ambient temperature, the solvent was removed under reduced pressure to give 5-chloro-3-((2R,3R,4S,5R)-3,4-dihydroxy-5-(hydroxymethyl)tetrahydrofuran-2-yl)-7-(((R)-1-(2-fluorophenyl)ethyl)amino)-3H-imidazo[4,5-b]pyridine-6-carbonitrile which was used directly for the next step.
Step B: Preparation of 5-chloro-7-(((R)-1-(2-fluorophenyl)ethyl)amino)-3-((3aR,4R,6R,6aR)-6-(hydroxymethyl)-2,2-dimethyltetrahydrofuro[3,4-d][1,3]dioxol-4-yl)-3H-imidazo[4,5-b]pyridine-6-carbonitrile: To a solution of 5-chloro-3-((2R,3R,4S,5R)-3,4-dihydroxy-5-(hydroxymethyl)tetrahydrofuran-2-yl)-7-(((R)-1-(2-fluorophenyl)ethyl)amino)-3H-imidazo[4,5-b]pyridine-6-carbonitrile from previous step in acetone (10 mL) was added 2,2-dimethoxy propane (278.1 mg, 2.7 mmol) and TsOH (51 mg, 0.27 mmol) at ambient temperature and stirred at this temperature for 3 hours. Ethyl acetate (10 mL) was added. The mixture was washed with saturated sodium bicarbonate solution, brine, dried (sodium sulfate), filtered and concentrated under reduced pressure. The residue obtained was purified by flash chromatography on silica gel to give 5-chloro-7-(((R)-1-(2-fluorophenyl)ethyl)amino)-3-((3aR,4R,6R,6aR)-6-(hydroxymethyl)-2,2-dimethyltetrahydrofuro[3,4-d][1,3]dioxol-4-yl)-3H-imidazo[4,5-b]pyridine-6-carbonitrile (72 mg, 71% yield) as a solid.
Step C: Preparation of (((((2R,3S,4R,5R)-5-(5-chloro-6-cyano-7-(((R)-1-(2-fluorophenyl)ethyl)amino)-3H-imidazo[4,5-b]pyridin-3-yl)-3,4-dihydroxytetrahydrofuran-2-yl)methoxy)(hydroxy)phosphoryl)methyl)phosphonic acid: To a solution of P,P′-methylenebis phosphonic dichloride (294.9 mg, 1.2 mmol) and 2,6-lutidine (253 mg, 2.4 mmol) in THF (5 mL) was added dropwise 5-chloro-7-(((R)-1-(2-fluorophenyl)ethyl)amino)-3-((3aR,4R,6R,6aR)-6-(hydroxymethyl)-2,2-dimethyltetrahydrofuro[3,4-d][1,3]dioxol-4-yl)-3H-imidazo[4,5-b]pyridine-6-carbonitrile (288 mg, 0.59 mmol) in THF (1 mL) at 0° C. After addition, the mixture was warmed to ambient temperature and stirred at this temperature for 1 hour. 2N triethyl ammonium bicarbonate solution (1 mL) was added. Solvent was removed under reduced pressure. 80% aqueous formic acid (2 mL) was added and the mixture was stirred at ambient temperature for 2 hours. Solvent was removed under reduced pressure, the residue was purified by reverse phase HPLC (0.05% TFA, 20% to 80% MeCN/H2O over 15 min) to give (((((2R,3S,4R,5R)-5-(5-chloro-6-cyano-7-(((R)-1-(2-fluorophenyl)ethyl)amino)-3H-imidazo[4,5-b]pyridin-3-yl)-3,4-dihydroxytetrahydrofuran-2-yl)methoxy)(hydroxy)phosphoryl)methyl)phosphonic acid (25.2 mg, 6% yield) as a solid. LCMS ESI (−) m/z 604 (M−H). 1H NMR (400 MHz, CD3OD, δ): 8.36 (s, 1H), 7.43 (t, 1H), 7.27-7.23 (m, 1H), 7.13-7.05 (m, 2H), 6.61-6.57 (m, 1H), 6.03 (d, 1H), 4.57 (t, 1H), 4.39 (t, 1H), 4.31-4.28 (m, 2H), 4.23 (s, 1H), 2.47 (t, 2H), 1.68 (d, 3H); 19F NMR (376 MHz, CD3OD, δ): −120.03; 31P NMR (162 MHz, CD3OD, δ): 19.66, 16.80.
Step A: Preparation of 5-chloro-3-((2R,3R,4S,5R)-3,4-dihydroxy-5-(hydroxymethyl)tetrahydrofuran-2-yl)-7-(((S)-1-(4-fluorophenyl)ethyl)amino)-3H-imidazo[4,5-b]pyridine-6-carbonitrile: A solution of (2R,3R,4R,5R)-2-(acetoxymethyl)-5-(5,7-dichloro-6-cyano-3H-imidazo[4,5-b]pyridin-3-yl)tetrahydrofuran-3,4-diyl diacetate (120 mg, 0.25 mmol), (S)-1-(4-fluorophenyl)ethan-1-amine (42.5 mg, 0.3 mmol) and triethylamine (75.8 mg, 0.75 mmol) in ethanol (5 mL) was stirred at 50° C. for 16 hours. Then 7 N ammonia in methanol (4 mL) was added. The mixture was stirred at 50° C. for additional 3 hours. After cooling to ambient temperature, the solvent was removed under reduced pressure to give 5-chloro-3-((2R,3R,4S,5R)-3,4-dihydroxy-5-(hydroxymethyl)tetrahydrofuran-2-yl)-7-(((S)-1-(4-fluorophenyl)ethyl)amino)-3H-imidazo[4,5-b]pyridine-6-carbonitrile which was used directly for the next step.
Step B: Preparation of 5-chloro-7-(((S)-1-(4-fluorophenyl)ethyl)amino)-3-((3aR,4R,6R,6aR)-6-(hydroxymethyl)-2,2-dimethyltetrahydrofuro[3,4-d][1,3]dioxol-4-yl)-3H-imidazo[4,5-b]pyridine-6-carbonitrile: To a solution of 5-chloro-3-[(2R,3R,4S,5R)-3,4-dihydroxy-5-(hydroxymethyl)tetrahydrofuran-2-yl]-7-[[(1S)-1-(4-fluorophenyl)ethyl]amino]imidazo[4,5-b]pyridine-6-carbonitrile from previous step in acetone (8 mL) was added 2,2-dimethoxy propane (318.2 mg, 3.1 mmol) and TsOH (61.8 mg, 0.33 mmol) at ambient temperature and stirred at this temperature for 3 hours. Ethyl acetate (10 mL) was added, washed with saturated sodium bicarbonate solution brine, dried (sodium sulfate), filtered and concentrated under reduced pressure. The residue obtained was purified by PTLC (petroleum ether/ethyl acetate=1:1) to give 5-chloro-7-(((S)-1-(4-fluorophenyl)ethyl)amino)-3-((3aR,4R,6R,6aR)-6-(hydroxymethyl)-2,2-dimethyltetrahydrofuro[3,4-d][1,3]dioxol-4-yl)-3H-imidazo[4,5-b]pyridine-6-carbonitrile (60.1 mg, 48% yield) as a solid.
Step C: Preparation of (((((2R,3S,4R,5R)-5-(5-chloro-6-cyano-7-(((S)-1-(4-fluorophenyl)ethyl)amino)-3H-imidazo[4,5-b]pyridin-3-yl)-3,4-dihydroxytetrahydrofuran-2-yl)methoxy)(hydroxy)phosphoryl)methyl)phosphonic acid: To a solution of P,P′-methylenebis phosphonic dichloride (92.3 mg, 0.37 mmol) and 2,6-lutidine (39.6 mg, 0.37 mmol) in THF (2 mL) was added dropwise 5-chloro-7-(((S)-1-(4-fluorophenyl)ethyl)amino)-3-((3aR,4R,6R,6aR)-6-(hydroxymethyl)-2,2-dimethyltetrahydrofuro[3,4-d][1,3]dioxol-4-yl)-3H-imidazo[4,5-b]pyridine-6-carbonitrile (68.3 mg, 0.12 mmol) in THF (1 mL) at 0° C. After addition, the mixture was warmed to ambient temperature and stirred at this temperature for 1 hour. 2 N triethyl ammonium bicarbonate solution (1 mL) was added. Solvent was removed under reduced pressure. 80% Formic acid aqueous (2 mL) was added and the mixture was stirred at ambient temperature for 2 hours. Solvent was removed under reduced pressure. The residue was purified by reverse phase HPLC (0.05% TFA, 20% to 80% MeCN/H2O over 15 min) to give (((((2R,3S,4R,5R)-5-(5-chloro-6-cyano-7-(((S)-1-(4-fluorophenyl)ethyl)amino)-3H-imidazo[4,5-b]pyridin-3-yl)-3,4-dihydroxytetrahydrofuran-2-yl)methoxy)(hydroxy)phosphoryl)methyl)phosphonic acid (22.5 mg, 25% yield) as a solid. LCMS ESI (−) m/z 604 (M−H). 1H NMR (400 MHz, CD3OD, δ): 8.41 (s, 1H), 7.49-7.46 (m, 2H), 7.04 (t, 2H), 6.43 (broad s, 1H), 6.03 (d, 1H), 4.62 (t, 1H), 4.41 (t, 1H), 4.38-4.20 (m, 3H), 2.45 (t, 2H), 1.66 (d, 3H); 19F NMR (376 MHz, CD3OD, δ): −117.75.
Step A: Preparation of 1H-pyrazolo[3,4-b]pyridine-5-carbonitrile: A suspension of 5-bromo-1H-Pyrazolo[3,4-b]pyridine (200 g, 1.010 mol), zinc cyanide (150 g, 1.28 mmol) and tetrakis(triphenylphosphaniumyl)palladium (30.0 g, 26 mmol) in 1-methyl-2-pyrrolidone (1000 mL) was stirred at 90° C. for 12 hours. After cooling to ambient temperature, Solid was removed by filtration. The filtrate was diluted with water and solid formed was collected by filtration and dried to give the first crop product. The filtrate was extracted with ethyl acetate, washed with brine, dried (sodium sulfate), filtered and concentrated under reduced pressure and combined with previous solid to give 1H-pyrazolo[3,4-b]pyridine-5-carbonitrile (130.0 g, 89% yield) as a gray solid.
Step B: Preparation of 5-cyano-1H-pyrazolo[3,4-b]pyridine 7-oxide: To a suspension of 1H-pyrazolo[3,4-b]pyridine-5-carbonitrile (130.0 g, 902 mmol) in ethyl acetate (1500 mL) was added 3-chloroperbenzoic acid (230 g, 999.6 mmol) at 0° C., then the mixture was stirred at 40° C. for 2 days. After cooling to ambient temperature, the solid was collected by filtration and dried to give 5-cyano-1H-pyrazolo[3,4-b]pyridine 7-oxide (150.0 g, 100% yield) as a solid.
Step C: Preparation of 4-chloro-1H-pyrazolo[3,4-b]pyridine-5-carbonitrile: A mixture of 5-cyano-1H-pyrazolo[3,4-b]pyridine 7-oxide (35.0 g, 218.6 mmol) in phosphorus (V) oxychloride (300.0 g, 1956.6 mmol) was stirred at 50° C. for 1 hour. Volatile was removed under reduced pressure. Water was added and sodium bicarbonate was added to adjust pH-8. The solid was collected by filtration and dried to give the first crop of product. The filtrate was extracted with ethyl acetate, washed with brine, dried (sodium sulfate), filtered and concentrated under reduced pressure and combined with previous solid. Combined solids were purified by flash chromatography on silica gel DCM/ethyl acetate=8:1 to 5:1 to give 4-chloro-1H-pyrazolo[3,4-b]pyridine-5-carbonitrile (4.0 g, 10% yield) as a solid.
Step D: Preparation of 4-chloro-5-cyano-1H-pyrazolo[3,4-b]pyridine 7-oxide: To a suspension of 4-chloro-1H-pyrazolo[3,4-b]pyridine-5-carbonitrile (16.0 g, 89.6 mmol) in ethyl acetate (500 mL) was added 3-chloroperbenzoic acid (30.0 g, 130. 4 mmol) at room temperature. Then the mixture was stirred at 40° C. for 2 days. After cooling to ambient temperature, the solid was collected by filtration and dried to give 4-chloro-5-cyano-1H-pyrazolo[3,4-b]pyridine 7-oxide (15.0 g, 86% yield) as a solid.
Step E: Preparation of 4,6-dichloro-1H-pyrazolo[3,4-b]pyridine-5-carbonitrile: To a suspension of 4-chloro-7-oxo-1H-pyrazolo[3,4-b]pyridine-5-carbonitrile (15.0 g, 77.1 mmol) in 1-methyl-2-pyrrolidone (150 mL) was added phosphorus (V) oxychloride (12.0 mL, 129.1 mmol) dropwise at 0° C. The mixture was stirred at 0° C. to 10° C. for 2 hours. The mixture was poured into ice. Sodium bicarbonate was added to adjust pH 8. The solid was collected by filtration and dried to 4,6-dichloro-1H-pyrazolo[3,4-b]pyridine-5-carbonitrile (9.3 g, 56% yield) as a solid. LCMS ESI (−) m/z 211 (M−H).
Step F: Preparation of 6-chloro-4-(3,3-difluoropyrrolidin-1-yl)-1H-pyrazolo[3,4-b]pyridine-5-carbonitrile: To a solution of 4,6-dichloro-1H-pyrazolo[3,4-b]pyridine-5-carbonitrile (0.2 g, 0.92 mmol) in 2-propanol (4 mL) was added 3,3-difluoro-pyrrolidine hydrochloride (0.20 g, 1.38 mmol) and triethylamine (0.38 mL, 2.76 mmol) at ambient temperature and stirred at ambient temperature for 18 hours. Solvent was removed under reduced pressure. Water (10 mL) was added and stirred at ambient temperature for 5 minutes. Solid was collected by filtration to give 6-chloro-4-(3,3-difluoropyrrolidin-1-yl)-1H-pyrazolo[3,4-b]pyridine-5-carbonitrile (0.22 g, 84% yield) as a solid. LCMS ESI (+) m/z 284 (M+H).
Step G: Preparation of 6-chloro-4-(3,3-difluoropyrrolidin-1-yl)-1-((3aR,4R,6R,6aR)-6-(hydroxymethyl)-2,2-dimethyltetrahydrofuro[3,4-d][1,3]dioxol-4-yl)-1H-pyrazolo[3,4-b]pyridine-5-carbonitrile: To a solution of 6-chloro-4-(3,3-difluoropyrrolidin-1-yl)-1H-pyrazolo[3,4-b]pyridine-5-carbonitrile (2.0 g, 7.05 mmol) in acetonitrile (20 mL) was added sodium hydride, 60% dispersion in mineral oil (564.0 mg, 14.1 mmol) at 0° C. After half an hour, [(3aR,4S,6R,6aR)-4-chloro-2,2-dimethyl-3a,4,6,6a-tetrahydrofuro[3,4-d][1,3]dioxol-6-yl]methoxy-tert-butyl-dimethyl-silane (6.8 g, 21.2 mmol) in CH3CN (10 mL) was added at 0° C. After addition, the mixture was warmed to ambient temperature and stirred at ambient temperature for 18 hours. The mixture was concentrated in vacuum to give a crude product. The crude product in THF (20 mL) was added TBAF, 1.0 M in THF (10 mL) at ambient temperature and stirred at ambient temperature for 1 hour. The mixture was partitioned between saturated sodium bicarbonate solution and ethyl acetate. The organic layer was isolated, dried (sodium sulfate), filtered and concentrated under reduced pressure. The residue obtained was purified by flash chromatography on silica gel to give 6-chloro-4-(3,3-difluoropyrrolidin-1-yl)-1-((3aR,4R,6R,6aR)-6-(hydroxymethyl)-2,2-dimethyltetrahydrofuro[3,4-d][1,3]dioxol-4-yl)-1H-pyrazolo[3,4-b]pyridine-5-carbonitrile (520 mg, 16% yield) as a solid.
Step H: Preparation of ((3aR,4R,6R,6aR)-6-(6-chloro-5-cyano-4-(3,3-difluoropyrrolidin-1-yl)-1H-pyrazolo[3,4-b]pyridin-1-yl)-2,2-dimethyltetrahydrofuro[3,4-d][1,3]dioxol-4-yl)methyl methanesulfonate: To a solution of give 6-chloro-4-(3,3-difluoropyrrolidin-1-yl)-1-((3aR,4R,6R,6aR)-6-(hydroxymethyl)-2,2-dimethyltetrahydrofuro[3,4-d][1,3]dioxol-4-yl)-1H-pyrazolo[3,4-b]pyridine-5-carbonitrile (200 mg, 0.44 mmol) in pyridine (2 mL) was added methanesulfonyl chloride (75.4 mg, 0.66 mmol) at 0° C. and stirred at 0° C. for 2 hours. The solvent was removed under reduced pressure. The residue was partitioned between water and ethyl acetate. The organic layer was separated, dried (sodium sulfate), filtered and concentrated under reduced pressure. The residue was purified by PTLC (petroleum ether/ethyl acetate=1:1) to give [(3aR,4R,6R,6aR)-4-[6-chloro-5-cyano-4-(3,3-difluoropyrrolidin-1-yl)pyrazolo[3,4-b]pyridin-1-yl]-2,2-dimethyl-3a,4,6,6a-tetrahydrofuro[3,4-d][1,3]dioxol-6-yl]methyl methanesulfonate (180 mg, 77% yield) as an oil.
Step I: Preparation of S-(((3aS,4S,6R,6aR)-6-(6-chloro-5-cyano-4-(3,3-difluoropyrrolidin-1-yl)-1H-pyrazolo[3,4-b]pyridin-1-yl)-2,2-dimethyltetrahydrofuro[3,4-d][1,3]dioxol-4-yl)methyl) ethanethioate: To a solution of [(3aR,4R,6R,6aR)-4-[6-chloro-5-cyano-4-(3,3-difluoropyrrolidin-1-yl)pyrazolo[3,4-b]pyridin-1-yl]-2,2-dimethyl-3a,4,6,6a-tetrahydrofuro[3,4-d][1,3]dioxol-6-yl]methyl methanesulfonate (150.0 mg, 0.28 mmol) in DMF (5 mL) was added potassium ethanethioate (96.3 mg, 0.84 mmol) and (n-Bu)4NBr (10.8 mg, 0.034 mmol) at ambient temperature and stirred at ambient temperature for 16 hours. The mixture was partitioned between water and ethyl acetate. The organic layer was separated, dried (sodium sulfate), filtered and concentrated under reduced pressure. The residue was purified by PTLC (petroleum ether/ethyl acetate=3:1) to give S-(((3aS,4S,6R,6aR)-6-(6-chloro-5-cyano-4-(3,3-difluoropyrrolidin-1-yl)-1H-pyrazolo[3,4-b]pyridin-1-yl)-2,2-dimethyltetrahydrofuro[3,4-d][1,3]dioxol-4-yl)methyl) ethanethioate (68.5 mg, 47% yield) as a solid.
Step J: Preparation of S-(((3aS,4S,6R,6aR)-6-(6-chloro-5-cyano-4-(3,3-difluoropyrrolidin-1-yl)-1H-pyrazolo[3,4-b]pyridin-1-yl)-2,2-dimethyltetrahydrofuro[3,4-d][1,3]dioxol-4-yl)methyl) ethanethioate: To a solution S-(((3aS,4S,6R,6aR)-6-(6-chloro-5-cyano-4-(3,3-difluoropyrrolidin-1-yl)-1H-pyrazolo[3,4-b]pyridin-1-yl)-2,2-dimethyltetrahydrofuro[3,4-d][1,3]dioxol-4-yl)methyl) ethanethioate (44.1 mg, 0.09 mmol) in MeOH (1 mL) was added 7 N ammonia in methanol (1.3 mL) in a sealed tube. The mixture was stirred at ambient temperature for 4 hours and then concentrated under reduced pressure to give S-(((3aS,4S,6R,6aR)-6-(6-chloro-5-cyano-4-(3,3-difluoropyrrolidin-1-yl)-1H-pyrazolo[3,4-b]pyridin-1-yl)-2,2-dimethyltetrahydrofuro[3,4-d][1,3]dioxol-4-yl)methyl) ethanethioate (52.1 mg, 100% yield) as a solid.
Step K: Preparation of diethyl (((((3aS,4S,6R,6aR)-6-(6-chloro-5-cyano-4-(3,3-difluoropyrrolidin-1-yl)-1H-pyrazolo[3,4-b]pyridin-1-yl)-2,2-dimethyltetrahydrofuro[3,4-d][1,3]dioxol-4-yl)methyl)thio)methyl)phosphonate: To a solution of 1-[(3aR,4R,6S,6aS)-2,2-dimethyl-6-(sulfanylmethyl)-3a,4,6,6a-tetrahydrofuro[3,4-d][1,3]dioxol-4-yl]-5-chloro-4-(3,3-difluoropyrrolidin-1-yl)pyrazolo[3,4-b]pyridine-6-carbonitrile (52.1 mg, 0.11 mmol) and (diethoxyphosphoryl)methyl 4-methylbenzenesulfonate (71.2 mg, 0.22 mmol) in NMP (3 mL) was added sodium hydride, 60% dispersion in mineral oil (8.8 mg, 0.22 mmol) at 0° C. After addition, the mixture was warmed to ambient temperature and stirred at ambient temperature for 30 minutes. The mixture was quenched with saturated ammonium chloride solution and extracted with ethyl acetate. The organic layer was separated, dried (sodium sulfate), filtered and concentrated under reduced pressure. The residue was purified by PTLC (petroleum ether/ethyl acetate=1:3) to give diethyl (((((3aS,4S,6R,6aR)-6-(6-chloro-5-cyano-4-(3,3-difluoropyrrolidin-1-yl)-1H-pyrazolo[3,4-b]pyridin-1-yl)-2,2-dimethyltetrahydrofuro[3,4-d][1,3]dioxol-4-yl)methyl)thio)methyl)phosphonate (22.6 mg, 19% yield) as a solid.
Step L: Preparation of diethyl (((((3aS,4S,6R,6aR)-6-(6-chloro-5-cyano-4-(3,3-difluoropyrrolidin-1-yl)-1H-pyrazolo[3,4-b]pyridin-1-yl)-2,2-dimethyltetrahydrofuro[3,4-d][1,3]dioxol-4-yl)methyl)sulfonyl)methyl)phosphonate: To a solution of diethyl (((((3aS,4S,6R,6aR)-6-(6-chloro-5-cyano-4-(3,3-difluoropyrrolidin-1-yl)-1H-pyrazolo[3,4-b]pyridin-1-yl)-2,2-dimethyltetrahydrofuro[3,4-d][1,3]dioxol-4-yl)methyl)thio)methyl)phosphonate (22.6 mg, 0.04 mmol) in acetonitrile (1 mL) and water (1 mL) was added Oxone® (73.7 mg, 0.12 mmol) at ambient temperature and stirred at ambient temperature for 5 hours. The mixture was partitioned between water and ethyl acetate. The organic layer was separated, dried (sodium sulfate), filtered and concentrated under reduced pressure. The residue was purified by PTLC (petroleum ether/ethyl acetate=1:3) to give diethyl (((((3aS,4S,6R,6aR)-6-(6-chloro-5-cyano-4-(3,3-difluoropyrrolidin-1-yl)-1H-pyrazolo[3,4-b]pyridin-1-yl)-2,2-dimethyltetrahydrofuro[3,4-d][1,3]dioxol-4-yl)methyl)sulfonyl)methyl)phosphonate (10.1 mg, 34% yield) as a solid.
Step M: Preparation of (((((2S,3S,4R,5R)-5-(6-chloro-5-cyano-4-(3,3-difluoropyrrolidin-1-yl)-1H-pyrazolo[3,4-b]pyridin-1-yl)-3,4-dihydroxytetrahydrofuran-2-yl)methyl)sulfonyl)methyl)phosphonic acid: To a solution of diethyl (((((3aS,4S,6R,6aR)-6-(6-chloro-5-cyano-4-(3,3-difluoropyrrolidin-1-yl)-1H-pyrazolo[3,4-b]pyridin-1-yl)-2,2-dimethyltetrahydrofuro[3,4-d][1,3]dioxol-4-yl)methyl)sulfonyl)methyl)phosphonate (10.1 mg, 0.02 mmol) in DCM (3 mL) was added 2,6-lutidine (120 mg) and TMSBr (180 mg) at ambient temperature and stirred at ambient temperature for 36 hours. The solvent was removed under reduced pressure, and co-evaporated with acetonitrile for two times. The residue was dissolved in 80% formic acid aqueous (2 mL) and stirred at ambient temperature for 2 hours. The mixture was concentrated under reduced pressure and the residue was purified by reverse phase HPLC (0.05% TFA, 20% to 80% MeCN/H2O over 15 min) to give (((((2S,3S,4R,5R)-5-(6-chloro-5-cyano-4-(3,3-difluoropyrrolidin-1-yl)-1H-pyrazolo[3,4-b]pyridin-1-yl)-3,4-dihydroxytetrahydrofuran-2-yl)methyl)sulfonyl)methyl)phosphonic acid (4.5 mg, 52% yield) as a solid. LCMS ESI (−) m/z 556 (M−H). 1H NMR (400 MHz, CD3OD, δ): 8.33 (s, 1H), 6.36 (s, 1H), 4.64-4.41 (m, 5H), 4.39-4.25 (m, 2H), 3.88-3.81 (m, 1H), 3.67 (d, 1H), 3.71-3.51 (m, 2H), 2.67-2.58 (m, 2H); 19F NMR (376 MHz, CD3OD, δ): −105.5.
Step A: Preparation of (S)-6-chloro-4-((1-(4-fluorophenyl)ethyl)amino)-1H-pyrazolo[3,4-b]pyridine-5-carbonitrile: To a solution of 4,6-dichloro-1H-pyrazolo[3,4-b]pyridine-5-carbonitrile (200.0 mg, 0.94 mmol) in ethanol (10 mL) was added (S)-1-(4-fluorophenyl)ethan-1-amine (261.3 mg, 1.88 mmol) and triethylamine (285.0 mg, 2.82 mmol) at ambient temperature and stirred at ambient temperature for 16 hours. Solvent was removed under reduced pressure. The residue was partitioned between water and ethyl acetate. The organic layer was separated, dried (sodium sulfate), filtered and concentrated under reduced pressure. The residue was purified by flash chromatography on silica gel to give (S)-6-chloro-4-((1-(4-fluorophenyl)ethyl)amino)-1H-pyrazolo[3,4-b]pyridine-5-carbonitrile (200 mg, 67% yield) as a solid. LCMS ESI (+) m/z 316 (M+H).
Step B: Preparation of 6-chloro-4-(((S)-1-(4-fluorophenyl)ethyl)amino)-1-((3aR,4R,6R,6aR)-6-(hydroxymethyl)-2,2-dimethyltetrahydrofuro[3,4-d][1,3]dioxol-4-yl)-1H-pyrazolo[3,4-b]pyridine-5-carbonitrile: To a solution of (S)-6-chloro-4-((1-(4-fluorophenyl)ethyl)amino)-1H-pyrazolo[3,4-b]pyridine-5-carbonitrile carbonitrile (200.0 mg, 0.63 mmol) in acetonitrile (10 mL) was added sodium hydride, 60% dispersion in mineral oil (64.2 mg, 1.61 mmol) at 0° C. After one hour, [(3aR,4S,6R,6aR)-4-chloro-2,2-dimethyl-3a,4,6,6a-tetrahydrofuro[3,4-d][1,3]dioxol-6-yl]methoxy-tert-butyl-dimethyl-silane (409 mg, 1.27 mmol) in CH3CN (5 mL) was added at 0° C. After addition, the mixture was warmed to ambient temperature and stirred at ambient temperature for 18 hours. The mixture was concentrated in vacuum to give a crude product. To the crude product in THF (10 mL) was added 1.0 M TBAF in THF (3.2 mL) at ambient temperature. The reaction mixture was stirred at ambient temperature for 1 hour and then partitioned between saturated sodium bicarbonate solution and ethyl acetate. The organic layer was separated, dried (sodium sulfate), filtered and concentrated under reduced pressure. The residue was purified flash chromatography on silica gel to give 6-chloro-4-(((S)-1-(4-fluorophenyl)ethyl)amino)-1-((3aR,4R,6R,6aR)-6-(hydroxymethyl)-2,2-dimethyltetrahydrofuro[3,4-d][1,3]dioxol-4-yl)-1H-pyrazolo[3,4-b]pyridine-5-carbonitrile (89 mg, 29% yield) as a solid. LCMS ESI (+) m/z 488 (M+H).
Step C: Preparation of ((3aR,4R,6R,6aR)-6-(6-chloro-5-cyano-4-(((S)-1-(4-fluorophenyl)ethyl)amino)-1H-pyrazolo[3,4-b]pyridin-1-yl)-2,2-dimethyltetrahydrofuro[3,4-d][1,3]dioxol-4-yl)methyl methanesulfonate: To a solution of 6-chloro-4-(((S)-1-(4-fluorophenyl)ethyl)amino)-1-((3aR,4R,6R,6aR)-6-(hydroxymethyl)-2,2-dimethyltetrahydrofuro[3,4-d][1,3]dioxol-4-yl)-1H-pyrazolo[3,4-b]pyridine-5-carbonitrile (89 mg, 0.18 mmol) in pyridine (5 mL) was added methanesulfonyl chloride (62.7 mg, 0.55 mmol) at 0° C. The reaction mixture was stirred at 0° C. for 2 hours. The solvent was removed under reduced pressure. The residue was partitioned between water and ethyl acetate; the organic layer was separated, dried (sodium sulfate), filtered and concentrated under reduced pressure. The residue was purified by flash chromatography on silica gel (petroleum ether/ethyl acetate=1:1) to give ((3aR,4R,6R,6aR)-6-(6-chloro-5-cyano-4-(((S)-1-(4-fluorophenyl)ethyl)amino)-1H-pyrazolo[3,4-b]pyridin-1-yl)-2,2-dimethyltetrahydrofuro[3,4-d][1,3]dioxol-4-yl)methyl methanesulfonate (85 mg, 82% yield) as an oil. LCMS ESI (+) m/z 566 (M+H).
Step D: Preparation of S-(((3aS,4S,6R,6aR)-6-(6-chloro-5-cyano-4-(((S)-1-(4-fluorophenyl)ethyl)amino)-1H-pyrazolo[3,4-b]pyridin-1-yl)-2,2-dimethyltetrahydrofuro[3,4-d][1,3]dioxol-4-yl)methyl) ethanethioate: To a solution of ((3aR,4R,6R,6aR)-6-(6-chloro-5-cyano-4-(((S)-1-(4-fluorophenyl)ethyl)amino)-1H-pyrazolo[3,4-b]pyridin-1-yl)-2,2-dimethyltetrahydrofuro[3,4-d][1,3]dioxol-4-yl)methyl methanesulfonate (85.0 mg, 0.15 mmol) in DMF (5 mL) was added potassium ethanethioate (85.8 mg, 0.75 mmol) and tetrabutyl ammonium bromide (24.2 mg, 0.08 mmol) at ambient temperature and stirred at 40° C. for 16 hours. The mixture was partitioned between water and ethyl acetate. The organic layer was separated, dried (sodium sulfate), filtered and concentrated under reduced pressure to give S-(((3aS,4S,6R,6aR)-6-(6-chloro-5-cyano-4-(((S)-1-(4-fluorophenyl)ethyl)amino)-1H-pyrazolo[3,4-b]pyridin-1-yl)-2,2-dimethyltetrahydrofuro[3,4-d][1,3]dioxol-4-yl)methyl) ethanethioate (81 mg, 99% yield) as a solid. LCMS ESI (+) m/z 546 (M+H).
Step E: Preparation of diethyl (((((3aS,4S,6R,6aR)-6-(6-chloro-5-cyano-4-(((S)-1-(4-fluorophenyl)ethyl)amino)-1H-pyrazolo[3,4-b]pyridin-1-yl)-2,2-dimethyltetrahydrofuro[3,4-d][1,3]dioxol-4-yl)methyl)thio)methyl)phosphonate: To a solution of S-(((3aS,4S,6R,6aR)-6-(6-chloro-5-cyano-4-(((S)-1-(4-fluorophenyl)ethyl)amino)-1H-pyrazolo[3,4-b]pyridin-1-yl)-2,2-dimethyltetrahydrofuro[3,4-d][1,3]dioxol-4-yl)methyl) ethanethioate (81.0 mg, 0.15 mmol) in ethanol (5 mL) was added 21% sodium ethoxide solution in ethanol (50.5 mg, 0.74 mmol) under nitrogen. After stirring at ambient temperature for 15 minutes, (diethoxyphosphoryl)methyl 4-methylbenzenesulfonate (57.4 mg, 0.18 mmol) was added and stirring was continued at 50° C. for 1 hour. After cooling to ambient temperature, the mixture was diluted with ethyl acetate, washed with brine, dried (sodium sulfate), filtered and concentrated under reduced pressure. The residue was purified by PTLC (petroleum ether/ethyl acetate=1:3) to give diethyl (((((3aS,4S,6R,6aR)-6-(6-chloro-5-cyano-4-(((S)-1-(4-fluorophenyl)ethyl)amino)-1H-pyrazolo[3,4-b]pyridin-1-yl)-2,2-dimethyltetrahydrofuro[3,4-d][1,3]dioxol-4-yl)methyl)thio)methyl)phosphonate (72 mg, 74% yield) as a solid. LCMS ESI (+) m/z 654 (M+H).
Step F: Preparation of diethyl (((((3aS,4S,6R,6aR)-6-(6-chloro-5-cyano-4-(((S)-1-(4-fluorophenyl)ethyl)amino)-1H-pyrazolo[3,4-b]pyridin-1-yl)-2,2-dimethyltetrahydrofuro[3,4-d][1,3]dioxol-4-yl)methyl)sulfonyl)methyl)phosphonate: To a solution of diethyl (((((3aS,4S,6R,6aR)-6-(6-chloro-5-cyano-4-(((S)-1-(4-fluorophenyl)ethyl)amino)-1H-pyrazolo[3,4-b]pyridin-1-yl)-2,2-dimethyltetrahydrofuro[3,4-d][1,3]dioxol-4-yl)methyl)thio)methyl)phosphonate (72.0 mg, 0.11 mmol) in acetonitrile (2 mL) and water (2 mL) was added Oxone® (276.3 mg, 0.45 mmol) at ambient temperature. The reaction mixture was stirred at ambient temperature for 6 hours and then partitioned between water and ethyl acetate. The organic layer was separated, dried (sodium sulfate), filtered and concentrated under reduced pressure. The residue was purified by PTLC (petroleum ether/ethyl acetate=1:3) to give diethyl (((((3aS,4S,6R,6aR)-6-(6-chloro-5-cyano-4-(((S)-1-(4-fluorophenyl)ethyl)amino)-1H-pyrazolo[3,4-b]pyridin-1-yl)-2,2-dimethyltetrahydrofuro[3,4-d][1,3]dioxol-4-yl)methyl)sulfonyl)methyl)phosphonate (41 mg, 54% yield) as a solid. LCMS ESI (+) m/z 686 (M+H).
Step G: Preparation (((((2S,3S,4R,5R)-5-(6-chloro-5-cyano-4-(((S)-1-(4-fluorophenyl)ethyl)amino)-1H-pyrazolo[3,4-b]pyridin-1-yl)-3,4-dihydroxytetrahydrofuran-2-yl)methyl)sulfonyl)methyl)phosphonic acid: To a solution of diethyl (((((3aS,4S,6R,6aR)-6-(6-chloro-5-cyano-4-(((S)-1-(4-fluorophenyl)ethyl)amino)-1H-pyrazolo[3,4-b]pyridin-1-yl)-2,2-dimethyltetrahydrofuro[3,4-d][1,3]dioxol-4-yl)methyl)sulfonyl)methyl)phosphonate (41.0 mg, 0.06 mmol) in DCM (4 mL) was added 2,6-lutidine (150 mg) and bromotrimethylsilane (225 mg) at ambient temperature. The reaction mixture was stirred at ambient temperature for 16 hours. The solvent was removed under reduced pressure, and residue was co-evaporated with acetonitrile for two times. The residue obtained was dissolved in 80% aqueous formic acid (2 mL). The resulting mixture was stirred at ambient temperature for 2 hours and then concentrated under reduced pressure. The residue was purified by reverse phase HPLC (0.05% TFA, 20% to 80% MeCN/H2O over 15 min) to give (((((2S,3S,4R,5R)-5-(6-chloro-5-cyano-4-(((S)-1-(4-fluorophenyl)ethyl)amino)-1H-pyrazolo[3,4-b]pyridin-1-yl)-3,4-dihydroxytetrahydrofuran-2-yl)methyl)sulfonyl)methyl)phosphonic acid (19.8 mg, 47% yield) as a solid. LCMS ESI (−) m/z 588 (M−H). 1H NMR (400 MHz, CD3OD, δ): 8.36 (s, 1H), 7.48-7.45 (m, 2H), 7.12-7.08 (m, 2H), 6.29 (d, 1H), 5.44-5.42 (m, 1H), 4.54-4.68 (m, 3H), 3.78-3.72 (m, 1H), 3.64-3.50 (m, 3H), 1.71 (d, 3H); 19F NMR (376 MHz, CD3OD, δ): −117.01; 31P NMR (162 MHz, CD3OD, δ): 7.48.
Step A: Preparation of 6-chloro-4-(((R)-1-(5-fluoropyridin-2-yl)ethyl)amino)-1-43aR,4R,6R,6aR)-6-(hydroxymethyl)-2,2-dimethyltetrahydrofuro[3,4-d][1,3]dioxol-4-yl)-1H-pyrrolo[2,3-b]pyridine-5-carbonitrile: To a solution of 4,6-dichloro-1-((3aR,4R,6R,6aR)-6-(hydroxymethyl)-2,2-dimethyltetrahydrofuro[3,4-d][1,3]dioxol-4-yl)-1H-pyrrolo[2,3-b]pyridine-5-carbonitrile (100.0 mg, 0.26 mmol) in s-butanol (5 mL) was added (1R)-1-(5-fluoro-2-pyridyl)ethanamine (43.8 mg, 0.31 mmol) and triethylamine (78.8 mg, 0.78 mmol). The reaction mixture was stirred at 100° C. for 16 hours. After cooling to ambient temperature, solvent was removed under reduced pressure. The residue was partitioned between water and ethyl acetate. The organic layer was separated, dried over Na2SO4, filtered and concentrated under reduced pressure. The residue was purified by PTLC (petroleum ether/ethyl acetate=1:1) to give 6-chloro-4-(((R)-1-(5-fluoropyridin-2-yl)ethyl)amino)-1-((3aR,4R,6R,6aR)-6-(hydroxymethyl)-2,2-dimethyltetrahydrofuro[3,4-d][1,3]dioxol-4-yl)-1H-pyrrolo[2,3-b]pyridine-5-carbonitrile (60.1 mg, 47% yield) as a solid.
Step B: Preparation of (((((2R,3S,4R,5R)-5-(6-chloro-5-cyano-4-(((R)-1-(5-fluoropyridin-2-yl)ethyl)amino)-1H-pyrrolo[2,3-b]pyridin-1-yl)-3,4-dihydroxytetrahydrofuran-2-yl)methoxy)(hydroxy)phosphoryl)methyl)phosphonic acid: To a solution of P,P′-methylenebis phosphonic dichloride (87.2 mg, 0.35 mmol) and 2,6-lutidine (37.4 mg, 0.35 mmol) in THF (2 mL) was added dropwise 6-chloro-4-(((R)-1-(5-fluoropyridin-2-yl)ethyl)amino)-1-((3aR,4R,6R,6aR)-6-(hydroxymethyl)-2,2-dimethyltetrahydrofuro[3,4-d][1,3]dioxol-4-yl)-1H-pyrrolo[2,3-b]pyridine-5-carbonitrile (56.8 mg, 0.12 mmol) in THF (1 mL) at 0° C. After the addition, the mixture was warmed to ambient temperature and stirred at this temperature for 1 hour. 2 N triethyl ammonium bicarbonate solution (1 mL) was added. Solvent was removed under reduced pressure. 80% Aqueous formic acid (2 mL) was added and the mixture was stirred at ambient temperature for 2 hours. Solvent was removed under reduced pressure. The residue was purified by reverse phase HPLC (0.05% TFA, 20% to 80% MeCN/H2O over 15 min) to give (((((2R,3S,4R,5R)-5-(6-chloro-5-cyano-4-(((R)-1-(5-fluoropyridin-2-yl)ethyl)amino)-1H-pyrrolo[2,3-b]pyridin-1-yl)-3,4-di hydroxytetrahydrofuran-2-yl)methoxy)(hydroxy)phosphoryl)methyl)phosphonic acid (27.9 mg, 33% yield) as a solid. LCMS ESI (−) m/z 604 (M−H). 1H NMR (400 MHz, CD3OD, δ): 8.49 (s, 1H), 7.60-7.41 (m, 3H), 6.72 (s, 1H), 6.23 (d, 1H), 5.53-5.51 (m, 1H), 4.41-4.17 (m, 5H), 2.47 (t, 2H), 1.66 (d, 3H); 19F NMR (376 MHz, CD3OD, δ): −130.88; 31P NMR (162 MHz, CD3OD, δ): 19.62, 16.90.
Step A: Preparation of 6-chloro-4-(((1r,3r)-3-fluorocyclobutyl)amino)-1H-pyrazolo[3,4-b]pyridine-5-carbonitrile: To a solution of 4,6-dichloro-1H-pyrazolo[3,4-b]pyridine-5-carbonitrile (180 mg, 0.84 mmol) in ethanol (10 mL) was added trans-3-fluoro cyclobutanamine (159.2 mg, 1.27 mmol) and triethylamine (256.5 mg, 2.53 mmol) at ambient temperature and the mixture was stirred at ambient temperature for 16 hours. Water was added and the resulting solid was collected by filtration and dried to give 6-chloro-4-4(1r,3r)-3-fluorocyclobutyl)amino)-1H-pyrazolo[3,4-b]pyridine-5-carbonitrile (170 mg, 76% yield) as a solid.
Step B: Preparation of 6-chloro-4-(((1r,3R)-3-fluorocyclobutyl)amino)-1-((3aR,4R,6R,6aR)-6-(hydroxymethyl)-2,2-dimethyltetrahydrofuro[3,4-d][1,3]dioxol-4-yl)-1H-pyrazolo[3,4-b]pyridine-5-carbonitrile: To a solution of 6-chloro-4-4(1r,3-r)-3-fluorocyclobutyl)amino)-1H-pyrazolo[3,4-b]pyridine-5-carbonitrile (170.1 mg, 0.64 mmol) in acetonitrile (5 mL) was added sodium hydride, 60% dispersion in mineral oil (147.6 mg, 3.69 mmol) at 0° C. After one hour, [(3aR,48,6R,6aR)-4-chloro-2,2-dimethyl-3a,4,6,6a-tetrahydrofuro[3,4-d][1,3]dioxol-6-yl]methoxy-tert-butyl-dimethyl-silane (516.9 mg, 1.6 mmol) in CH3CN (5 mL) was added at 0° C. After addition, the mixture was warmed to and stirred at ambient temperature for 16 hours and then concentrated under reduced pressure to give a crude product which was partitioned between water and ethyl acetate. The organic layer was separated, dried (sodium sulfate), filter and concentrated under reduced pressure. The residue was dissolved in THF (5 mL) and tetrabutylammonium fluoride, 1.0 M in THF (2.3 mL) was added at ambient temperature. The reaction mixture was stirred at ambient temperature for 2 hours and then partitioned between saturated sodium bicarbonate solution and ethyl acetate. The organic layer was separated, dried (sodium sulfate), filtered and concentrated under reduced pressure. The residue was purified by flash chromatography on silica gel to give 6-chloro-4-(((1r,3R)-3-fluorocyclobutyl)amino)-1-((3aR,4R,6R,6aR)-6-(hydroxymethyl)-2,2-dimethyltetrahydrofuro[3,4-d][1,3]dioxol-4-yl)-1H-pyrazolo[3,4-b]pyridine-5-carbonitrile (60 mg, 23% yield) as a solid.
Step C: Preparation of ((3aR,4R,6R,6aR)-6-(6-chloro-5-cyano-4-(((1R,3R)-3-fluorocyclobutyl)amino)-1H-pyrazolo[3,4-b]pyridin-1-yl)-2,2-dimethyltetrahydrofuro[3,4-d][1,3]dioxol-4-yl)methyl methanesulfonate: To a solution of 6-chloro-4-(((1R,3R)-3-fluorocyclobutyl)amino)-1-((3aR,4R,6R,6aR)-6-(hydroxymethyl)-2,2-dimethyltetrahydrofuro[3,4-d][1,3]dioxol-4-yl)-1H-pyrazolo[3,4-b]pyridine-5-carbonitrile (60.0 mg, 0.14 mmol) in pyridine (5 mL) was added methanesulfonyl chloride (47 mg, 0.41 mmol) at 0° C. The reaction mixture was stirred at 0° C. for 2 hours. The solvent was removed under reduced pressure and the residue was partitioned between water and ethyl acetate. The organic layer was separated, dried (sodium sulfate), filtered and concentrated under reduced pressure. The residue was purified by flash chromatography on silica gel (petroleum ether/ethyl acetate=1:1) to give ((3aR,4R,6R,6aR)-6-(6-chloro-5-cyano-4-(((1r,3R)-3-fluorocyclobutyl)amino)-1H-pyrazolo[3,4-b]pyridin-1-yl)-2,2-dimethyltetrahydrofuro[3,4-d][1,3]dioxol-4-yl)methyl methanesulfonate (57 mg, 80% yield) as an oil.
Step D: Preparation of S-(((3aS,4S,6R,6aR)-6-(6-chloro-5-cyano-4-4(1r,3R)-3-fluorocyclobutyl)amino)-1H-pyrazolo[3,4-b]pyridin-1-yl)-2,2-dimethyltetrahydrofuro[3,4-d][1,3]dioxol-4-yl)methyl) ethanethioate: To a solution of ((3aR,4R,6R,6aR)-6-(6-chloro-5-cyano-4-(((1r,3R)-3-fluorocyclobutyl)amino)-1H-pyrazolo[3,4-b]pyridin-1-yl)-2,2-dimethyltetrahydrofuro[3,4-d][1,3]dioxol-4-yl)methyl (57.0 mg, 0.11 mmol) in DMF (5 mL) was added potassium ethanethioate (37.9 mg, 0.33 mmol) and tetrabutylammonium bromide (17.8 mg, 0.06 mmol) at ambient temperature. The resulting mixture was stirred at 40° C. for 24 hours and then partitioned between water and MTBE. The organic layer was separated, dried (sodium sulfate), filtered and concentrated under reduced pressure to give S-(((3aS,4S,6R,6aR)-6-(6-chloro-5-cyano-4-(((1r,3R)-3-fluorocyclobutyl)amino)-1H-pyrazolo[3,4-b]pyridin-1-yl)-2,2-dimethyltetrahydrofuro[3,4-d][1,3]dioxol-4-yl)methyl) ethanethioate (86 mg, 100% yield) which was used directly in the next step without purification.
Step E: Preparation of diethyl (((((3aS,4S,6R,6aR)-6-(6-chloro-5-cyano-4-(((1r,3R)-3-fluorocyclobutyl)amino)-1H-pyrazolo[3,4-b]pyridin-1-yl)-2,2-dimethyltetrahydrofuro[3,4-d][1,3]dioxol-4-yl)methyl)thio)methyl)phosphonate: To a solution of S-(((3aS,4S,6R,6aR)-6-(6-chloro-5-cyano-4-(((1r,3R)-3-fluorocyclobutyl)amino)-1H-pyrazolo[3,4-b]pyridin-1-yl)-2,2-dimethyltetrahydrofuro[3,4-d][1,3]dioxol-4-yl)methyl) ethanethioate (86.0 mg, 0.17 mmol) in ethanol (5 mL) was added 21% sodium ethoxide solution in ethanol (35.4 mg, 0.52 mmol) under nitrogen. The mixture was stirred at ambient temperature for 15 minutes. (Diethoxyphosphoryl)methyl 4-methylbenzenesulfonate (83.8 mg, 0.26 mmol) was added and the resulting mixture was stirred at 55° C. for 1 hour. After cooling to ambient temperature, the mixture was diluted with ethyl acetate, washed with brine, dried (sodium sulfate), filtered and concentrated under reduced pressure. The residue was purified by PTLC (petroleum ether/ethyl acetate=2:1) to give diethyl (((((3aS,4S,6R,6aR)-6-(6-chloro-5-cyano-4-(((1r,3R)-3-fluorocyclobutyl)amino)-1H-pyrazolo[3,4-b]pyridin-1-yl)-2,2-dimethyltetrahydrofuro[3,4-d][1,3]dioxol-4-yl)methyl)thio)methyl)phosphonate (71 mg, 68% yield) as a solid.
Step F: Preparation of diethyl (((((3aS,45,6R,6aR)-6-(6-chloro-5-cyano-4-(((1r,3R)-3-fluorocyclobutyl)amino)-1H-pyrazolo[3,4-b]pyridin-1-yl)-2,2-dimethyltetrahydrofuro[3,4-d][1,3]dioxol-4-yl)methyl)sulfonyl)methyl)phosphonate: To a solution of diethyl (((((3aS,4S,6R,6aR)-6-(6-chloro-5-cyano-4-(((1r,3R)-3-fluorocyclobutyl)amino)-1H-pyrazolo[3,4-b]pyridin-1-yl)-2,2-dimethyltetrahydrofuro[3,4-d][1,3]dioxol-4-yl)methyl)thio)methyl)phosphonate (71.0 mg, 0.12 mmol) in acetonitrile (2 mL) and water (2 mL) was added Oxone® (129.0 mg, 0.21 mmol) at ambient temperature. The reaction mixture was stirred at ambient temperature for 3 hours and then partitioned between water and ethyl acetate. The organic layer was separated, dried (sodium sulfate), filtered and concentrated under reduced pressure. The residue was purified by flash chromatography on silica gel to give diethyl (((((3aS,4S,6R,6aR)-6-(6-chloro-5-cyano-4-(((1r,3R)-3-fluorocyclobutyl)amino)-1H-pyrazolo[3,4-b]pyridin-1-yl)-2,2-dimethyltetrahydrofuro[3,4-d][1,3]dioxol-4-yl)methyl)sulfonyl)methyl)phosphonate (35.0 mg, 47% yield) as a solid.
Step G: Preparation (((((2S,3S,4R,5R)-5-(6-chloro-5-cyano-4-(((1r,3R)-3-fluorocyclobutyl)amino)-1H-pyrazolo[3,4-b]pyridin-1-yl)-3,4-dihydroxytetrahydrofuran-2-yl)methyl)sulfonyl)methyl)phosphonic acid: To a solution of diethyl (((((3aS,4S,6R,6aR)-6-(6-chloro-5-cyano-4-(((1r,3R)-3-fluorocyclobutyl)amino)-1H-pyrazolo[3,4-b]pyridin-1-yl)-2,2-dimethyltetrahydrofuro[3,4-d][1,3]dioxol-4-yl)methyl)sulfonyl)methyl)phosphonate (35 mg, 0.06 mmol) in DCM (4 mL) was added 2,6-lutidine (117.9 mg, 1.1 mmol) and bromotrimethylsilane (168.5 mg, 1.1 mmol) at ambient temperature. The mixture was stirred at ambient temperature overnight. The solvent was removed under reduced pressure. The residue was co-evaporated with acetonitrile for two times and then dissolved in 80% formic acid aqueous (3 mL). The mixture was stirred at ambient temperature for 2 hours and then concentrated under reduced pressure. The residue was purified by reverse phase HPLC (0.05% TFA, 20% to 80% MeCN/H2O over 15 min) to give (((((2S,3S,4R,5R)-5-(6-chloro-5-cyano-4-(((1r,3R)-3-fluorocyclobutyl)amino)-1H-pyrazolo[3,4-b]pyridin-1-yl)-3,4-dihydroxytetrahydrofuran-2-yl)methyl)sulfonyl)methyl)phosphonic acid (13.5 mg, 21% yield) as a solid. LCMS ESI (−) m/z 538 (M−H). 1H NMR (400 MHz, CD3OD, δ): 8.20 (s, 1H), 6.35 (d, 1H), 5.40-5.21 (m, 1H), 4.83-4.62 (m, 1H), 4.63-4.50 (m, 3H), 3.87 (dd, 1H), 3.74-3.50 (m, 3H), 2.88-2.79 (m, 2H), 2.77-2.63 (m, 2H); 19F NMR (376 MHz, CD3OD, δ): −175.79; 31P NMR (162 MHz, CD3OD, δ): 8.26.
Step A: Preparation of (((((((3aS,4S,6R,6aR)-6-(6-chloro-5-cyano-4-(cyclopentylamino)-1H-pyrrolo[2,3-b]pyridin-1-yl)-2,2-dimethyltetrahydrofuro[3,4-d][1,3]dioxol-4-yl)methyl)thio)methyl)(hydroxy)phosphoryl)oxy)methyl pivalate: To a solution of chloromethyl pivalate (3.86 g, 25.6 mmol) in NMP (20 mL) was added N,N-diisopropylethylamine (4.56 mL, 25.6 mmol), tetrabutylammonium bromide (0.04 g, 0.13 mmol) and (((((3aS,4S,6R,6aR)-6-(6-chloro-5-cyano-4-(cyclopentylamino)-1H-pyrrolo[2,3-b]pyridin-1-yl)-2,2-dimethyltetrahydrofuro[3,4-d][1,3]dioxol-4-yl)methyl)thio)methyl)phosphonic acid (2.78 g, 5.12 mmol). The reaction mixture was stirred at 52° C. (bath) for 24 hours. After cooling to ambient temperature, water (20 mL), saturated potassium hydrogen sulfate (20 mL) and 1:1 MTBE/ethyl acetate (60 mL) were added. The organic layer was separated, dried (sodium sulfate), filtered and concentrated under reduced pressure. The residue was purified by flash chromatography on silica gel to give (((((((3aS,4S,6R,6aR)-6-(6-chloro-5-cyano-4-(cyclopentylamino)-1H-pyrrolo[2,3-b]pyridin-1-yl)-2,2-dimethyltetrahydrofuro[3,4-d][1,3]dioxol-4-yl)methyl)thio)methyl)(hydroxy)phosphoryl)oxy)methyl pivalate (0.7 g, 20% yield) as a solid.
Step B: Preparation of (((((((3aS,4S,6R,6aR)-6-(6-chloro-5-cyano-4-(cyclopentylamino)-1H-pyrrolo[2,3-b]pyridin-1-yl)-2,2-dimethyltetrahydrofuro[3,4-d][1,3]dioxol-4-yl)methyl)thio)methyl)(4-fluorophenoxy)phosphoryl)oxy)methyl pivalate: A solution of (((((((3aS,4S,6R,6aR)-6-(6-chloro-5-cyano-4-(cyclopentylamino)-1H-pyrrolo[2,3-b]pyridin-1-yl)-2,2-dimethyltetrahydrofuro[3,4-d][1,3]dioxol-4-yl)methyl)thio)methyl)(hydroxy)phosphoryl)oxy)methyl pivalate (0.09 g, 0.13 mmol), DCC (0.22 g, 1.05 mmol) and 4-fluoro phenol (0.29 g, 2.62 mmol) in pyridine (2 mL) was stirred at 56° C. for 10 hours. After cooling to ambient temperature, water (5 mL) and MTBE (10 mL) were added. The organic layer was separated, dried (sodium sulfate), filtered and concentrated under reduced pressure. The residue obtained was purified by reverse phase column chromatography, 30-100% CH3CN/water, to give (((((((3aS,4S,6R,6aR)-6-(6-chloro-5-cyano-4-(cyclopentylamino)-1H-pyrrolo[2,3-b]pyridin-1-yl)-2,2-dimethyltetrahydrofuro[3,4-d][1,3]dioxol-4-yl)methyl)thio)methyl)(4-fluorophenoxy)phosphoryl)oxy)methyl pivalate (0.031 g, 31% yield) as a solid. LCMS ESI (−) m/z 749 (M−H).
Step C: Preparation of (((((((3aS,4S,6R,6aR)-6-(6-chloro-5-cyano-4-(cyclopentylamino)-1H-pyrrolo[2,3-b]pyridin-1-yl)-2,2-dimethyltetrahydrofuro[3,4-d][1,3]dioxol-4-yl)methyl)sulfonyl)methyl)(4-fluorophenoxy)phosphoryl)oxy)methyl pivalate: To a solution of (((((((3aS,4S,6R,6aR)-6-(6-chloro-5-cyano-4-(cyclopentylamino)-1H-pyrrolo[2,3-b]pyridin-1-yl)-2,2-dimethyltetrahydrofuro[3,4-d][1,3]dioxol-4-yl)methyl)thio)methyl)(4-fluorophenoxy)phosphoryl)oxy)methyl pivalate (0.03 g, 0.04 mmol) in tert-butyl methyl ether (3 mL) was added 3-chloroperbenzoic acid (0.02 g, 0.09 mmol) at 0° C. and stirred at this temperature for 3 hours. It was added to 10% sodium sulfite (5 mL) and MTBE (10 mL) mixture. The organic layer was separated, washed with brine, dried (sodium sulfate), filtered and concentrated under reduced pressure. The residue was purified by flash chromatography on silica gel 1:1 hexane/ethyl acetate to give (((((((3aS,4S,6R,6aR)-6-(6-chloro-5-cyano-4-(cyclopentylamino)-1H-pyrrolo[2,3-b]pyridin-1-yl)-2,2-dimethyltetrahydrofuro[3,4-d][1,3]dioxol-4-yl)methyl)sulfonyl)methyl)(4-fluorophenoxy)phosphoryl)oxy)methyl pivalate (0.026 g, 80% yield) as a solid. LCMS ESI (−) m/z 781 (M−H).
Step D: Preparation of (((((((2S,3S,4R,5R)-5-(6-chloro-5-cyano-4-(cyclopentylamino)-1H-pyrrolo[2,3-b]pyridin-1-yl)-3,4-dihydroxytetrahydrofuran-2-yl)methyl)sulfonyl)methyl)(4-fluorophenoxy)phosphoryl)oxy)methyl pivalate: A solution of (((((((3aS,4S,6R,6aR)-6-(6-chloro-5-cyano-4-(cyclopentylamino)-1H-pyrrolo[2,3-b]pyridin-1-yl)-2,2-dimethyltetrahydrofuro[3,4-d][1,3]dioxol-4-yl)methyl)sulfonyl)methyl)(4-fluorophenoxy)phosphoryl)oxy)methyl pivalate (0.03 g, 0.03 mmol) in 80% aqueous formic acid (2 mL) was stirred at ambient temperature for 1 hour. Solvent was removed under reduced pressure. The residue was purified by reverse phase HPLC (10-95% acetonitrile/water, 0.1% TFA) to give (((((((2S,3S,4R,5R)-5-(6-chloro-5-cyano-4-(cyclopentylamino)-1H-pyrrolo[2,3-b]pyridin-1-yl)-3,4-dihydroxytetrahydrofuran-2-yl)methyl)sulfonyl)methyl)(4-fluorophenoxy)phosphoryl)oxy)methyl pivalate (0.011 g, 44% yield) as a solid. LCMS ESI (+) m/z 743 (M+H). Only chemical shift multiplet range of the phosphorous diastereomer mixture is reported. 1H NMR (400 MHz, CD3OD, δ): 7.37-7.36, 7.14-7.11, 7.065-7.01, 6.98-3.94, 6.82-6.81, 6.76-6.75, 6.17-6.14, 5.71-5.66, 5.48-5.45, 4.57-4.52, 4.47-4.43, 4.38-4.30, 4.27-4.10, 3.61-3.46, 2.17-2.02, 1.86-1.62, 1.10-1.07; 31P NMR (162 MHz, CD3OD, δ): 10.35, 10.24.
Step A: Preparation of (((((((3aS,4S,6R,6aR)-6-(6-chloro-5-cyano-4-(((1s,3S)-3-fluorocyclobutyl)amino)-1H-pyrrolo[2,3-b]pyridin-1-yl)-2,2-dimethyltetrahydrofuro[3,4-d][1,3]dioxol-4-yl)methyl)thio)methyl)phosphoryl)bis(oxy))bis(methylene) bis(2,2-dimethylbutanoate): To a solution of (((((3aS,4S,6R,6aR)-6-(6-chloro-5-cyano-4-(((1s,3S)-3-fluorocyclobutyl)amino)-1H-pyrrolo[2,3-b]pyridin-1-yl)-2,2-dimethyltetrahydrofuro[3,4-d][1,3]dioxol-4-yl)methyl)thio)methyl)phosphonic acid (1.5 g, 2.74 mmol) in NMP (10 mL) was added N,N-diisopropylethylamine (2.44 mL, 13.7 mmol), tetrabutylammonium iodide (0.15 g, 0.41 mmol), sodium iodide (1.23 g, 8.22 mmol) and chloromethyl 2,2-dimethylbutanoate (2.82 g, 13.7 mmol). The reaction mixture was stirred at 50° C. (bath) for 24 hours. After cooling to ambient temperature, water (20 mL) and MTBE (30 mL) were added. The organic layer was separated, dried (sodium sulfate), filtered and concentrated under reduced pressure. The residue was purified by flash chromatography on silica gel 2:1 hexane/ethyl acetate to give (((((((3aS,4S,6R,6aR)-6-(6-chloro-5-cyano-4-(((1s,3S)-3-fluorocyclobutyl)amino)-1H-pyrrolo[2,3-b]pyridin-1-yl)-2,2-dimethyltetrahydrofuro[3,4-d][1,3]dioxol-4-yl)methyl)thio)methyl)phosphoryl)bis(oxy))bis(methylene) bis(2,2-dimethylbutanoate) (1.39 g, 63% yield) as a solid. LCMS ESI (+) m/z 803 (M+H).
Step B: Preparation of (((((((3aS,4S,6R,6aR)-6-(6-chloro-5-cyano-4-(((1s,3S)-3-fluorocyclobutyl)amino)-1H-pyrrolo[2,3-b]pyridin-1-yl)-2,2-dimethyltetrahydrofuro[3,4-d][1,3]dioxol-4-yl)methyl)sulfonyl)methyl)phosphoryl)bis(oxy))bis(methylene) bis(2,2-dimethylbutanoate): To a solution of (((((((3aS,45,6R,6aR)-6-(6-chloro-5-cyano-4-(((1s,3S)-3-fluorocyclobutyl)amino)-1H-pyrrolo[2,3-b]pyridin-1-yl)-2,2-dimethyltetrahydrofuro[3,4-d][1,3]dioxol-4-yl)methyl)thio)methyl)phosphoryl)bis(oxy))bis(methylene) bis(2,2-dimethylbutanoate) (1.39 g, 1.73 mmol) in tert-butyl methyl ether (20 mL) was added 3-chloroperbenzoic acid (0.81 g, 3.63 mmol) at 0° C. and stirred at this temperature for 3 hours. The reaction mixture was poured into a mixture of 10% sodium sulfite (30 mL) and MTBE (40 mL). The organic layer was separated, washed with brine, dried (sodium sulfate), filtered and concentrated under reduced pressure. The residue was purified by flash chromatography on silica gel 1:1 hexane/ethyl acetate to give [[(3aR,4R,6S,6aS)-4-[6-chloro-5-cyano-4-[(3-fluorocyclobutyl)amino]pyrrolo[2,3-b]pyridin-1-yl]-2,2-dimethyl-3a,4,6,6a-tetrahydrofuro[3,4-d][1,3]dioxol-6-yl]methylsulfonylmethyl-(2,2-dimethylbutanoyloxymethoxy)phosphoryl]oxymethyl 2,2-dimethylbutanoate (1.2 g, 83% yield) as a solid. LCMS ESI (+) m/z 835 (M+H).
Step C: Preparation of (((((((2S,3S,4R,5R)-5-(6-chloro-5-cyano-4-(((1s,3S)-3-fluorocyclobutyl)amino)-1H-pyrrolo[2,3-b]pyridin-1-yl)-3,4-dihydroxytetrahydrofuran-2-yl)methyl)sulfonyl)methyl)phosphoryl)bis(oxy))bis(methylene) bis(2,2-dimethylbutanoate): A solution of (((((((3aS,4S,6R,6aR)-6-(6-chloro-5-cyano-4-(cyclopentylamino)-1H-pyrrolo[2,3-b]pyridin-1-yl)-2,2-dimethyltetrahydrofuro[3,4-d][1,3]dioxol-4-yl)methyl)thio)methyl)(4-fluorophenoxy)phosphoryl)oxy)methyl pivalate (0.3 g, 0.36 mmol) in 80% aqueous trifluoroacetic acid (2 mL) was stirred at ambient temperature for 1 hour. After removing the solvent under reduced pressure, saturated sodium bicarbonate (10 mL) and MTBE (10 mL) were added. The organic layer was separated, dried (sodium sulfate), filtered and concentrated. The residue was purified by reverse phase HPLC (10-95% acetonitrile/water, 0.1% TFA) to give (((((((2S,3S,4R,5R)-5-(6-chloro-5-cyano-4-(((1s,3S)-3-fluorocyclobutyl)amino)-1H-pyrrolo[2,3-b]pyridin-1-yl)-3,4-di hydroxytetrahydrofuran-2-yl)methyl)sulfonyl)methyl)phosphoryl)bi s(oxy))bi s(methylene) bis(2,2-dimethylbutanoate) (0.2 g, 70% yield) as a solid. LCMS ESI (+) m/z 795 (M+H). 1H NMR (400 MHz, CDCl3, δ): 7.34 (d, 1H), 6.56 (d, 1H), 6.14 (s, 1H), 5.73 (d, 2H), 5.58 (d, 2H), 5.48 (d, 1H), 5.04-4.84 (m, 1H), 4.59-4.56 (m, 1H), 4.45-4.41 (m, 2H), 4.20-4.07 (m, 2H), 3.94 (t, 1H), 3.77-3.66 (m, 2H), 3.12-3.03 (m, 2H), 2.41-2.27 (m, 2H), 2.19-1.67 (m, 2H), 1.57 (q, 2H), 1.50 (q, 2H), 1.18 (s, 6H), 1.11 (s, 6H), 0.83 (t, 3H), 0.77 (t, 3H); 19F NMR (376 MHz, CDCl3, δ): −168.13; 31P NMR (162 MHz, CDCl3, δ): 11.44.
Step A: Preparation of (((((((3aS,4S,6R,6aR)-6-(6-chloro-5-cyano-4-4(1s,3S)-3-fluorocyclobutyl)amino)-1H-pyrrolo[2,3-b]pyridin-1-yl)-2,2-dimethyltetrahydrofuro[3,4-d][1,3]dioxol-4-yl)methyl)thio)methyl)(hydroxy)phosphoryl)oxy)methyl hexanoate: To a solution of (((((3aS,4S,6R,6aR)-6-(6-chloro-5-cyano-4-(((1s,3S)-3-fluorocyclobutyl)amino)-1H-pyrrolo[2,3-b]pyridin-1-yl)-2,2-dimethyltetrahydrofuro[3,4-d][1,3]dioxol-4-yl)methyl)thio)methyl)phosphonic acid (100.0 mg, 0.18 mmol) in DMF (5 mL) was added chloromethyl hexanoate (60.2 mg, 0.37 mmol), N,N-diisopropylethylamine (95.5 mg, 0.74 mmol) and tetrabutylammonium bromide (3.1 mg, 0.01 mmol) at ambient temperature. The mixture was stirred at 50° C. for 24 hours. After cooling to ambient temperature, the mixture was partitioned between water and ethyl acetate. The organic layer was separated, dried (sodium sulfate), filtered and concentrated under reduced pressure. The residue was purified by PTLC (DCM/MeOH=5:1) to give (((((((3aS,4S,6R,6aR)-6-(6-chloro-5-cyano-4-(((1s,3S)-3-fluorocyclobutyl)amino)-1H-pyrrolo[2,3-b]pyridin-1-yl)-2,2-dimethyltetrahydrofuro[3,4-d][1,3]dioxol-4-yl)methyl)thio)methyl)(hydroxy)phosphoryl)oxy)methyl hexanoate (49 mg, 39% yield) as a solid.
Step B: Preparation of (((((((3aS,4S,6R,6aR)-6-(6-chloro-5-cyano-4-(((1s,3S)-3-fluorocyclobutyl)amino)-1H-pyrrolo[2,3-b]pyridin-1-yl)-2,2-dimethyltetrahydrofuro[3,4-d][1,3]dioxol-4-yl)methyl)sulfonyl)methyl)(hydroxy)phosphoryl)oxy)methyl hexanoate: To a solution of (((((((3aS,4S,6R,6aR)-6-(6-chloro-5-cyano-4-(((1s,3S)-3-fluorocyclobutyl)amino)-1H-pyrrolo[2,3-b]pyridin-1-yl)-2,2-dimethyltetrahydrofuro[3,4-d][1,3]dioxol-4-yl)methyl)thio)methyl)(hydroxy)phosphoryl)oxy)methyl hexanoate (49.0 mg, 0.07 mmol) in MTBE (3 mL) and THF (3 mL) was added 3-chloroperbenzoic acid (56.7 mg, 0.28 mmol) at 0° C. The mixture was stirred at 0° C. for 3 hours and then partitioned between water and DCM. The organic layer was separated, dried (sodium sulfate), filtered and concentrated. The residue was purified by PTLC (DCM/MeOH=5:1) to give (((((((3aS,4S,6R,6aR)-6-(6-chloro-5-cyano-4-(((1s,3S)-3-fluorocyclobutyl)amino)-1H-pyrrolo[2,3-b]pyridin-1-yl)-2,2-dimethyltetrahydrofuro[3,4-d][1,3]dioxol-4-yl)methyl)sulfonyl)methyl)(hydroxy)phosphoryl)oxy)methyl hexanoate (41 mg, 80% yield) as a solid.
Step C: Preparation of (((((((2S,3S,4R,5R)-5-(6-chloro-5-cyano-4-(((1s,3S)-3-fluorocyclobutyl)amino)-1H-pyrrolo[2,3-b]pyridin-1-yl)-3,4-dihydroxytetrahydrofuran-2-yl)methyl)sulfonyl)methyl)(hydroxy)phosphoryl)oxy)methyl hexanoate: A solution of (((((((3aS,4S,6R,6aR)-6-(6-chloro-5-cyano-4-(((1s,3S)-3-fluorocyclobutyl)amino)-1H-pyrrolo[2,3-b]pyridin-1-yl)-2,2-dimethyltetrahydrofuro[3,4-d][1,3]dioxol-4-yl)methyl)sulfonyl)methyl)(hydroxy)phosphoryl)oxy)methyl hexanoate (41.0 mg, 0.06 mmol) in 80% aqueous HCOOH (3 mL) was stirred at ambient temperature for 2 hours. The solvent was removed under reduced pressure and the residue was purified by PTLC (DCM/MeOH=3:1) to give (((((((2S,3S,4R,5R)-5-(6-chloro-5-cyano-4-(((1s,3S)-3-fluorocyclobutyl)amino)-1H-pyrrolo[2,3-b]pyridin-1-yl)-3,4-di hydroxytetrahydrofuran-2-yl)methyl)sulfonyl)methyl)(hydroxy)phosphoryl)oxy)methyl hexanoate (32.9 mg, 85% yield) as a solid. LCMS ESI (+) m/z 667 (M+H). 1H NMR (400 MHz, CD3OD, δ): 7.51 (d, 1H), 6.85 (d, 1H), 6.23 (d, 1H), 5.53-5.38 (m, 2H), 5.08-4.93 (m, 1H), 4.58-4.41 (m, 2H), 4.32-4.16 (m, 3H), 3.92-3.78 (broad t, 1H), 3.76-3.58 (broad t, 1H), 3.57-3.47 (broad d, 1H), 3.08-2.93 (m, 2H), 2.52-2.34 (m, 2H), 2.32-2.18 (m, 2H), 1.59-1.48 (m, 2H), 1.41-1.22 (m, 4H), 0.98 (t, 3H); 19F NMR (376 MHz, CD3OD, δ): −170.20.
Preparation of (((((((3aS,4S,6R,6aR)-6-(6-chloro-5-cyano-4-(((1s,3S)-3-fluorocyclobutyl)amino)-1H-pyrrolo[2,3-b]pyridin-1-yl)-2-oxotetrahydrofuro[3,4-d][1,3]dioxol-4-yl)methyl)sulfonyl)methyl)(hydroxy)phosphoryl)oxy)methyl hexanoate: To a solution of (((((((2S,3S,4R,5R)-5-(6-chloro-5-cyano-4-(((1s,3S)-3-fluorocyclobutyl)amino)-1H-pyrrolo[2,3-b]pyridin-1-yl)-3,4-dihydroxytetrahydrofuran-2-yl)methyl)sulfonyl)methyl)(hydroxy)phosphoryl)oxy)methyl hexanoate (27.0 mg, 0.04 mmol) in THF (2 mL) and acetonitrile (2 mL) was added carbonyldiimidazole (13.1 mg, 0.08 mmol) at ambient temperature and stirred at this temperature for 2 hours. The mixture was diluted with ethyl acetate and washed with 10% potassium hydrogen sulfate for 2 times. The organic layer was dried (sodium sulfate), filtered, and concentrate under reduced pressure. The residue was purified by PTLC (DCMIMeOH=5:1) for 3 times to give (((((((3aS,4S,6R,6aR)-6-(6-chloro-5-cyano-4-(((1s,3S)-3-fluorocyclobutyl)amino)-1H-pyrrolo[2,3-b]pyridin-1-yl)-2-oxotetrahydrofuro[3,4-d][1,3]dioxol-4-yl)methyl)sulfonyl)methyl)(hydroxy)phosphoryl)oxy)methyl hexanoate (10.6 mg, 37% yield) as a solid. 1H NMR (400 MHz, CD3OD, δ): 7.44 (d, 1H), 6.88 (d, 1H), 6.46 (d, 1H), 5.83 (d, 1H), 5.71 (m, 1H), 5.43-5.50 (m, 2H), 4.4.92-5.01 (m 1H), 4.28 (m, 1H), 4.01 (m, 1H), 3.83-3.88 (m, 1H), 3.74 (s, 1H), 3.70 (s, 1H), 3.02 (m, 2H), 2.45 (m, 2H), 2.33 (t, 2H), 1.59 (m, 2H), 1.33 (m, 5H), 0.93 (t, 3H).
Step A: Preparation (((((((3aS,4S,6R,6aR)-6-(6-chloro-5-cyano-4-(((1s,3S)-3-fluorocyclobutyl)amino)-1H-pyrrolo[2,3-b]pyridin-1-yl)-2,2-dimethyltetrahydrofuro[3,4-d][1,3]dioxol-4-yl)methyl)thio)methyl)(hydroxy)phosphoryl)oxy)methyl palmitate: To a solution of (((((3aS,4S,6R,6aR)-6-(6-chloro-5-cyano-4-(((1s,3S)-3-fluorocyclobutyl)amino)-1H-pyrrolo[2,3-b]pyridin-1-yl)-2,2-dimethyltetrahydrofuro[3,4-d][1,3]dioxol-4-yl)methyl)thio)methyl)phosphonic acid (150.0 mg, 0.27 mmol) in DMF (5 mL) was added chloromethyl hexadecanoate (167.2 mg, 0.55 mmol) and N,N-diisopropylethylamine (95.5 mg, 0.74 mmol) and tetrabutylammonium bromide (2.7 mg, 0.01 mmol) at ambient temperature. The mixture was stirred at 52° C. for 24 hours. After cooling to ambient temperature, the mixture was partitioned between 10% potassium hydrogen sulfate and ethyl acetate. The organic layer was separated, dried (sodium sulfate), filtered and concentrated under reduced pressure. The residue was purified by PTLC (DCM/MeOH=5:1) to give (((((((3aS,4S,6R,6aR)-6-(6-chloro-5-cyano-4-(((1s,3S)-3-fluorocyclobutyl)amino)-1H-pyrrolo[2,3-b]pyridin-1-yl)-2,2-dimethyltetrahydrofuro[3,4-d][1,3]dioxol-4-yl)methyl)thio)methyl)(hydroxy)phosphoryl)oxy)methyl palmitate (94 mg, 42% yield) as a solid. LCMS ESI (+) m/z 815 (M+H).
Step B: Preparation (((((((3aS,4S,6R,6aR)-6-(6-chloro-5-cyano-4-(((1s,3S)-3-fluorocyclobutyl)amino)-1H-pyrrolo[2,3-b]pyridin-1-yl)-2,2-dimethyltetrahydrofuro[3,4-d][1,3]dioxol-4-yl)methyl)sulfonyl)methyl)(hydroxy)phosphoryl)oxy)methyl palmitate: To a solution of (((((((3aS,4S,6R,6aR)-6-(6-chloro-5-cyano-4-(((1s,3S)-3-fluorocyclobutyl)amino)-1H-pyrrolo[2,3-b]pyridin-1-yl)-2,2-dimethyltetrahydrofuro[3,4-d][1,3]dioxol-4-yl)methyl)thio)methyl)(hydroxy)phosphoryl)oxy)methyl palmitate (94.0 mg, 0.12 mmol) in MTBE (3 mL) and THF (3 mL) was added 3-chloroperbenzoic acid (46.8 mg, 0.23 mmol) at 0° C. and the mixture was stirred at 0° C. for 2 hours. The mixture was partitioned between water and ethyl acetate. The organic layer was separated, dried (sodium sulfate), filtered and concentrated under reduced pressure. The residue was purified by PTLC (DCM/MeOH=4:1) to give (((((((3aS,4S,6R,6aR)-6-(6-chloro-5-cyano-4-(((1s,3S)-3-fluorocyclobutyl)amino)-1H-pyrrolo[2,3-b]pyridin-1-yl)-2,2-dimethyltetrahydrofuro[3,4-d][1,3]dioxol-4-yl)methyl)sulfonyl)methyl)(hydroxy)phosphoryl)oxy)methyl palmitate (63 mg, 64% yield) as a solid. LCMS ESI (+) m/z 847 (M+H).
Step C: Preparation of (((((((2S,3S,4R,5R)-5-(6-chloro-5-cyano-4-(((1s,3S)-3-fluorocyclobutyl)amino)-1H-pyrrolo[2,3-b]pyridin-1-yl)-3,4-dihydroxytetrahydrofuran-2-yl)methyl)sulfonyl)methyl)(hydroxy)phosphoryl)oxy)methyl palmitate: A solution of (((((((3aS,4S,6R,6aR)-6-(6-chloro-5-cyano-4-(((1s,3S)-3-fluorocyclobutyl)amino)-1H-pyrrolo[2,3-b]pyridin-1-yl)-2,2-dimethyltetrahydrofuro[3,4-d][1,3]dioxol-4-yl)methyl)sulfonyl)methyl)(hydroxy)phosphoryl)oxy)methyl palmitate (63.0 mg, 0.07 mmol) in 80% aqueous HCOOH (5 mL) was stirred at ambient temperature for 3 hours. The solvent was removed under reduced pressure and the residue obtained was purified by PTLC (DCM/MeOH=4:1) to give (((((((2S,3S,4R,5R)-5-(6-chloro-5-cyano-4-(((1s,3S)-3-fluorocyclobutyl)amino)-1H-pyrrolo[2,3-b]pyridin-1-yl)-3,4-dihydroxytetrahydrofuran-2-yl)methyl)sulfonyl)methyl)(hydroxy)phosphoryl)oxy)methyl palmitate (47 mg, 78% yield) as a solid. LCMS ESI (+) m/z 807 (M+H). 1H NMR (400 MHz, CD3OD, δ): 7.54 (d, 1H), 6.83 (d, 1H), 6.24 (d, 1H), 5.51-5.43 (m, 2H), 5.01-4.98 (m, 0.5H), 4.61-4.43 (m, 2.5H), 4.23-4.26 (m, 3H), 3.73 (t, 1H), 3.57-3.53 (m, 2H), 3.05-3.01 (m, 2H), 2.47-2.41 (m, 2H), 2.23-2.21 (m, 2H), 1.60-1.52 (m, 2H), 1.39-1.28 (m, 24H), 0.92 (t, 3H); 19F NMR (376 MHz, CD3OD, δ): −170.09; 31P NMR (162 MHz, CD3OD, δ): 3.39.
Preparation of (((((((3aS,4S,6R,6aR)-6-(6-chloro-5-cyano-4-(((1s,3S)-3-fluorocyclobutyl)amino)-1H-pyrrolo[2,3-b]pyridin-1-yl)-2-oxotetrahydrofuro[3,4-d][1,3]dioxol-4-yl)methyl)sulfonyl)methyl)(hydroxy)phosphoryl)oxy)methyl palmitate: To a solution of (((((((2S,3S,4R,5R)-5-(6-chloro-5-cyano-4-(((1s,3S)-3-fluorocyclobutyl)amino)-1H-pyrrolo[2,3-b]pyridin-1-yl)-3,4-dihydroxytetrahydrofuran-2-yl)methyl)sulfonyl)methyl)(hydroxy)phosphoryl)oxy)methyl palmitate (35 mg, 0.04 mmol) in THF (5 mL) was added di(1H-imidazol-1-yl)methanone (21.1 mg, 0.13 mmol) at ambient temperature and stirred at this temperature for 3 hours. The mixture was diluted with ethyl acetate and washed with 10% potassium hydrogen sulfate for 2 times. The organic layer was dried (sodium sulfate), filtered, concentrate under reduced pressure. The residue obtained was purified by PTLC (DCM/MeOH=4:1) to give (((((((3aS,45,6R,6aR)-6-(6-chloro-5-cyano-4-(((1s,3S)-3-fluorocyclobutyl)amino)-1H-pyrrolo[2,3-b]pyridin-1-yl)-2-oxotetrahydrofuro[3,4-d][1,3]dioxol-4-yl)methyl)sulfonyl)methyl)(hydroxy)phosphoryl)oxy)methyl palmitate (13.6 mg, 32% yield) as a solid. LCMS ESI (+) m/z 831 (M+H). LCMS ESI (+) m/z 831 (M+H). 1H NMR (400 MHz, CD3OD, δ): 7.47 (m, 1H), 6.87 (m, 1H), 6.47 (d, 1H), 5.8-5.69 (m, 2H), 5.50-5.47 (m, 2H), 5.01-4.85 (m, 1H), 4.70-4.50 (m, 1H), 4.30-4.26 (m, 2H), 4.05-3.90 (m, 2H), 3.57-3.53 (m, 2H), 3.1-2.95 (m, 2H), 2.48-2.24 (m, 4H), 1.72-1.48 (m, 25H), 0.89 (t, 3H); 19F NMR (376 MHz, CD3OD, δ): −170.12; 31P NMR (162 MHz, CD3OD, δ): 3.06.
Enzyme assays were carried out using an EnzChek® Pyrophosphate Assay Kit (E-6645 Molecular Probes) containing PNP (purine ribonucleoside phosphorylase) at 100 U/mL Stock and MESG (2-amino-6-mercapto-7-methylpurine) at 1 mM Stock. Human CD73 (0.25 nM final concentration in assay), MW 61000 expressed in CHO cells was purchased from R&D Systems.
A compound of the present disclosure (5 μL) was transferred to a 384-well assay plate. The compound was added in a 15 point, 3-fold serial dilution (300 μM to 0.0002 μM) in DMSO. CD73 assay buffer (25 mM HEPES, pH 7.5, 100 mM NaCl, 0.001% Tween-20, 1 uM ZnCl2, 10 units PNP, 0.1 mM MESG, 0.25 nM hCD73) was added and the resulting solution was allowed to equilibrate for 10 minutes at room temperature. The enzyme reaction was initiated by adding 20 μl of 125 μM AMP (diluted 10:1 with buffer containing 50% glycerol, 25 mM Tris, pH 7.5, 1 mM ZnCl2) to a final concentration of 25 μM AMP. The plate was immediately placed in a plate reader (Synergy 2 or Spark 10), and a reading was taken every minute for 10 to 20 minutes in a kinetic run at 360 nm. The linear portion of the curve was used to determine the observed rate (initial velocity). Low signal controls containing 100 μM adenosine 5′-(α,β-methylene)diphosphate and high signal controls containing no compound were measured for each plate.
IC50 values were calculated using Dotmatics template equation for 4-parameter fit. Results are expressed as % inhibition using the following equation:
The IC50 of adenosine 5′-(α,β-methylene)diphosphate was 0.050 μM.
U138 human neuroglioma cells were used in these experiments. U138 cells were obtained from ATCC and cultured in DMEM with 10% FBS. 2500 cells were seeded into 96-well plate with 100 μL of media the day before the experiment. Cells were washed twice with 200 μL of assay buffer (20 mM HEPES, pH 7.4; 137 mM NaCl; 5.4 mM KCl; 1.3 mM CaCl2; 4.2 mM NaHCO3; 1 mg/mL glucose) to remove residual inorganic phosphate. After washing, 100 μL of buffer was added to each well, then 100 μL of a mixture of AMP substrate (200 μM) and diluted compound was added to each well. The cells were incubated at 37° C. (with 5% CO2) for 2 hours. 50 μL of supernatant was transferred to a 96-well assay plate and the concentration of inorganic phosphate was determined using malachite green reagent (R&D System; Cat: DY996). Compound 323 has an IC50 of 1.4 nM while compound 25 has an IC50 of 0.1 nM.
Table 2 shows biological activities of selected compounds described herein in the enzyme and cell-based assays. Compound numbers correspond to the numbers and structures provided in Table 1 and Examples 1-43.
Efficacy study for Compound 1: All test compounds were formulated in saline. 2.5×105 EG7-OVA lymphoma cells (ATCC® CRL-2113™) in PBS and Matrigel (1:1 in volume) were inoculated subcutaneously in the right flank of C57BL6 mice at 6-7 weeks of age for tumor development. When the xenografts reached about 120 mm3 in size, the tumor bearing mice were randomly grouped into three groups (n=10) and treated by intraperitoneal injection with vehicle (saline; QD)+anti-Hamster IgG (5 mg/kg; BIW; BioXCell BP0091), vehicle (saline; QD)+anti-PD-1 (5 mg/kg; BIW; BioXCell BP0033-2), Compound 1 (10 mg/kg BID)+anti-PD-1 (5 mg/kg; BIW; BioXCell BP0033-2) for 12 days. Tumor volumes were expressed in mm3 using the formula V=0.5×a×b2 wherein a and b were the long and short diameters of the tumor, respectively (Table 3).
Efficacy study for Compounds 25: All test compounds were formulated in saline. 2.5×105 EG7-OVA lymphoma cells (ATCC® CRL-2113™) in PBS and Matrigel (1:1 in volume) were inoculated subcutaneously in the right flank of C57BL6 mice at 6-7 weeks of age for tumor development. When the xenografts reached about 100 mm3 in size, the tumor bearing mice were randomly grouped into three groups (n=8) and treated by intraperitoneal injection with vehicle (saline; QD)+anti-Hamster IgG (5 mg/kg; BIW; BioXCell BP0091), vehicle (saline; QD)+anti-PD-1 (5 mg/kg; BIW; BioXCell BP0033-2), Compound 25 (10 mg/kg; BID)+anti-PD-1 (5 mg/kg; BIW; BioXCell BP0033-2) for 13 days. Tumor volumes were expressed in mm3 using the formula V=0.5×a×b2 wherein a and b were the long and short diameters of the tumor, respectively (Table 4).
Efficacy study for Compounds 135: Compound 135 was formulated with vehicle (5% absolute ethanol, 30% PEG400, 65% water containing 0.5% methyl cellulose and 0.5% Tween80®). 2.5×105 EG7-OVA lymphoma cells (ATCC® CRL-2113™) in PBS and Matrigel (1:1 in volume) were inoculated subcutaneously in the right flank of C57BL6 mice at 6-7 weeks of age for tumor development. When the xenografts reached about 110 mm3 in size, the tumor bearing mice were randomly grouped into three groups (n=15) and treated by oral gavage with vehicle (BID)+anti-Hamster IgG (5 mg/kg; BIW; Intraperitoneal injection; BioXCell BP0091), vehicle (BID)+anti-PD-1 (5 mg/kg; BIW; Intraperitoneal injection; BioXCell BP0033-2), Compound 135 (150 mg/kg BID)+anti-PD-1 (5 mg/kg; BIW; Intraperitoneal injection; BioXCell BP0033-2) for 13 days. Tumor volumes were expressed in mm3 using the formula V=0.5×a×b2 wherein a and b were the long and short diameters of the tumor, respectively (Table 5).
Efficacy study for Compound 1: All test compounds were formulated in saline as vehicle. 5×105 B16-SIY melanoma cells (ATCC® CRL-6322™) in PBS and Matrigel (1:1 in volume) were inoculated subcutaneously in the right flank of C57BL6 mice at 6-7 weeks of age for tumor development. When the xenografts reached about 120 mm3 in size, the tumor bearing mice were randomly grouped into three groups (n=10) and treated by intraperitoneal injection with vehicle (saline, QD)+anti-Hamster IgG (5 mg/kg; BIW; BioXCell BP0091), vehicle (saline, QD)+anti-PD-1 (5 mg/kg; BIW; BioXCell BP0033-2), Compound 1 (10 mg/kg; QD)+anti-PD-1 (5 mg/kg; BIW; BioXCell BP0033-2) for 12 days. Tumor sizes were measured twice weekly in two dimensions using a caliper and the volume were expressed in mm3 using the formula V=0.5×a×b2 wherein a and b were the long and short diameters of the tumor, respectively (Table 6).
This application claims the benefit of U.S. Provisional Application No. 62/678,862, filed May 31, 2018, which is incorporated by reference herein.
| Filing Document | Filing Date | Country | Kind |
|---|---|---|---|
| PCT/US2019/034826 | 5/31/2019 | WO | 00 |
| Number | Date | Country | |
|---|---|---|---|
| 62678862 | May 2018 | US |
