Patent Application
20240327514
This disclosure relates to compositions and killing cancer cells utilizing T cell redirection therapeutics.
This application contains a sequence listing, which is submitted electronically via Patent Center as an XML formatted sequence listing with a file name “JBI6312USDIV1_SeqListing.xml” creation date of 1 Feb. 2024 and having a size of 104 KB. The sequence listing submitted via Patent Center is part of the specification and is herein incorporated by reference in its entirety.
Despite several treatment options, there is currently no cure for acute myeloid leukemia (AML) and multiple myeloma (MM). Even after achieving high rates (50%-80%) of complete hematologic remission (CR), defined as the presence of ≤5% of leukemic blasts (AML) or plasma cells (MM) in the bone marrow (BM) (1, 2), the majority of patients with AML or MM relapse (3-5). Relapse has been linked to minimal residual disease (MRD) whereby small numbers of cancer stem cells (CSC), or other malignant progenitor cells, fail to be cleared and persist even after therapy (6). Preventing relapses and finding cures for AML and MM requires finding better strategies to eliminate MRD.
Like hematopoietic stem cells (HSC), CSC in AML and MM reside and preferentially persist in the BM niche (7, 8). The BM niche provides a specialized microenvironment via secretion of soluble growth factors and cell-cell interactions that are protective to the CSC (9). Moreover, the BM niche is immune-suppressive and is appreciated to be a site of immune privilege at steady state to allow for normal hematopoiesis and immune cell generation (10). These aspects of the BM niche have provided resistance against and minimized the efficacy of several anti-cancer drugs including chemotherapy, targeted small molecule inhibitors, and antibody based therapies (11-14).
The ability of T cells to specifically lyse tumor cells and secrete cytokines to recruit and support immunity against cancer makes them an attractive option for therapy. Several approaches have capitalized on this strategy such as bispecific T-cell engagers (BiTEs, small bispecific biologics), chimeric antigen receptors (CARs) and bispecific antibodies, among others (15). BiTEs and antibody-mediated redirection cross-link T cells to tumor cells by engaging a specific epitope on tumor cells and CD3 on T cells, leading to T cell activation, and secretion of perforins and granzymes that ultimately kill the tumor cells. These CD3 redirection therapies have been validated as an effective anti-cancer strategy in the clinic with the approval of CD19×CD3 BiTE (blinatumomab) for acute lymphoblastic lymphoma (ALL) (16). However, the immunosuppressive and protective nature of the BM niche potentially poses a significant hurdle to T cell redirection therapies.
For example, as shown herein, using bispecific antibodies targeting specific tumor antigens (CD123 and BCMA) and CD3, it was observed that co-culture of AML or MM cell lines with BM stromal cells significantly protected cancer cells from bispecific-T cell-mediated lysis in vitro. Similar results were observed in vivo when presence of human BM stromal cells in a humanized xenograft AML model attenuated tumor growth inhibition (TGI) observed with bispecific antibody treatment. Impaired CD3 redirection cytotoxicity was correlated with reduced T cell effector responses, thereby providing a mechanism to explain loss of activity of the bispecific antibody.
Provided herein is a pharmaceutical composition comprising a T cell redirection therapeutic and a VLA-4 adhesion pathway inhibitor, wherein, the T cell redirection therapeutic comprises a first binding region having specificity against a T cell surface antigen and a second binding region having specificity against a tumor associated antigen (TAA).
In one embodiment of the pharmaceutical composition, the composition further comprises a pharmaceutically acceptable carrier.
In a further embodiment of the pharmaceutical composition, the T cell redirection therapeutic is an antibody or antigen-binding fragment thereof.
In a yet further embodiment of the pharmaceutical composition, the T cell surface antigen is selected from the group consisting of CD3, CD2, CD4, CD5, CD6, CD8, CD28, CD40L, CD44, CD137, KI2L4, NKG2E, NKG2D, NKG2F, BTNL3, CD186, BTNL8, PD-1, CD195, and NKG2C.
In a yet further embodiment of the pharmaceutical composition, the T cell surface antigen is CD3.
In a yet further embodiment of the pharmaceutical composition, the TAA is selected from the group consisting of BCMA, CD123, GPRC5D, CD33, CD19, PSMA, TMEFF2, CD20, CD22, CD25, CD52, ROR1, HM1.24, CD38, and SLAMF7.
In a yet further embodiment of the pharmaceutical composition, the T cell surface antigen is a BCMAxCD3 bispecific antibody having a first antigen-binding site that immunospecifically binds BCMA and a second antigen-binding site that immunospecifically binds CD3.
In a yet further embodiment of the pharmaceutical composition, the BCMAxCD3 bispecific antibody comprises a first heavy chain (HC1), a first light chain (LC1), a second heavy chain (HC2), and a second light chain (LC2), and wherein the HC1 and the LC1 pair to form the first antigen-binding site and the HC2 and the LC2 pair to form the second antigen-binding site.
In a yet further embodiment of the pharmaceutical composition, the HC1 comprises the amino acid sequence of SEQ ID NO: 1, the LC1 comprises the amino acid sequence of SEQ ID NO: 2, the HC2 comprises the amino acid sequence of SEQ ID NO: 3, and the LC2 comprises the amino acid sequence of SEQ ID NO: 4.
In a yet further embodiment of the pharmaceutical composition, the HC1 comprises the amino acid sequence of SEQ ID NO: 5, the LC1 comprises the amino acid sequence of SEQ ID NO: 6, the HC2 comprises the amino acid sequence of SEQ ID NO: 3, and the LC2 comprises the amino acid sequence of SEQ ID NO: 4.
In a yet further embodiment of the pharmaceutical composition, the T cell surface antigen is a CD123×CD3 bispecific antibody having a first antigen-binding site that immunospecifically binds CD123 and a second antigen-binding site that immunospecifically binds CD3.
In a yet further embodiment of the pharmaceutical composition, the CD123×CD3 bispecific antibody comprises a first heavy chain (HC1), a first light chain (LC1), a second heavy chain (HC2), and a second light chain (LC2), and wherein the HC1 and the LC1 pair to form the first antigen-binding site and the HC2 and the LC2 pair to form the second antigen-binding site.
In a yet further embodiment of the pharmaceutical composition, the HC1 comprises the amino acid sequence of SEQ ID NO: 7, the LC1 comprises the amino acid sequence of SEQ ID NO: 8, the HC2 comprises the amino acid sequence of SEQ ID NO: 9, and the LC2 comprises the amino acid sequence of SEQ ID NO: 10.
In a yet further embodiment of the pharmaceutical composition, the VLA-4 adhesion pathway inhibitor is an anti-VLA-4 antibody or antigen-binding fragment thereof.
In a yet further embodiment of the pharmaceutical composition, the anti-VLA-4 antibody or antigen-binding fragment thereof is selected from the group consisting of monoclonal antibodies, scFv, Fab, Fab′, F(ab′) 2, and F (v) fragments, heavy chain monomers or dimers, light chain monomers or dimers, and dimers consisting of one heavy chain and one light chain.
In a yet further embodiment of the pharmaceutical composition, the VLA-4 adhesion pathway inhibitor is a VLA-4 antagonist.
In a yet further embodiment of the pharmaceutical composition, the VLA-4 adhesion pathway inhibitor is a VLA-4 antagonist selected from the group consisting of BIO1211, TCS2314, BIO5192, and TR14035.
Further provided herein is a method of killing cancer cells, comprising administering a therapeutically effective amount of the pharmaceutical composition provided above.
In a further embodiment of the method, the cancer is a hematological malignancy or a solid tumor.
In a yet further embodiment of the method, the T cell redirection therapeutic and the VLA-4 adhesion pathway inhibitor are administered simultaneously or sequentially.
In a yet further embodiment of the method, the VLA-4 adhesion pathway inhibitor is administered prior to the T cell redirection therapeutic.
In a yet further embodiment of the method, the VLA-4 adhesion pathway inhibitor is administered after administration of the T cell redirection therapeutic.
Yet further provided herein is a kit comprising the pharmaceutical composition provided above.
The foregoing summary, as well as the detailed description and embodiments of the present application, will be better understood when read in conjunction with the appended claims and drawings. It should be understood, however, that the invention is not limited to the precise recitations disclosed herein.
Various publications, articles and patents are cited or described in the background and throughout the specification; each of these references is herein incorporated by reference in its entirety. Discussion of documents, acts, materials, devices, articles or the like which has been included in the present specification is for the purpose of providing context for the invention. Such discussion is not an admission that any or all of these matters form part of the prior art with respect to any inventions disclosed or claimed.
Unless defined otherwise, all technical and scientific terms used herein have the same meaning as commonly understood to one of ordinary skill in the art to which this invention pertains. Otherwise, certain terms used herein have the meanings as set forth in the specification.
It must be noted that as used herein and in the appended claims, the singular forms “a,” “an,” and “the” include plural reference unless the context clearly dictates otherwise.
Unless otherwise stated, any numerical values, such as a concentration or a concentration range described herein, are to be understood as being modified in all instances by the term “about.” Thus, a numerical value typically includes ±10% of the recited value. For example, a concentration of 1 mg/mL includes 0.9 mg/mL to 1.1 mg/mL. Likewise, a concentration range of 1% to 10% (w/v) includes 0.9% (w/v) to 11% (w/v). As used herein, the use of a numerical range expressly includes all possible subranges, all individual numerical values within that range, including integers within such ranges and fractions of the values unless the context clearly indicates otherwise.
Unless otherwise indicated, the term “at least” preceding a series of elements is to be understood to refer to every element in the series. Those skilled in the art will recognize or be able to ascertain using no more than routine experimentation, many equivalents to the specific embodiments of the invention described herein. Such equivalents are intended to be encompassed by the invention.
As used herein, the terms “comprises,” “comprising,” “includes,” “including,” “has,” “having,” “contains” or “containing,” or any other variation thereof, will be understood to imply the inclusion of a stated integer or group of integers but not the exclusion of any other integer or group of integers and are intended to be non-exclusive or open-ended. For example, a composition, a mixture, a process, a method, an article, or an apparatus that comprises a list of elements is not necessarily limited to only those elements but can include other elements not expressly listed or inherent to such composition, mixture, process, method, article, or apparatus. Further, unless expressly stated to the contrary, “or” refers to an inclusive or and not to an exclusive or. For example, a condition A or B is satisfied by any one of the following: A is true (or present) and B is false (or not present), A is false (or not present) and B is true (or present), and both A and B are true (or present).
As used herein, the conjunctive term “and/or” between multiple recited elements is understood as encompassing both individual and combined options. For instance, where two elements are conjoined by “and/or,” a first option refers to the applicability of the first element without the second. A second option refers to the applicability of the second element without the first. A third option refers to the applicability of the first and second elements together. Any one of these options is understood to fall within the meaning, and therefore satisfy the requirement of the term “and/or” as used herein. Concurrent applicability of more than one of the options is also understood to fall within the meaning, and therefore satisfy the requirement of the term “and/or.”
As used herein, the term “consists of,” or variations such as “consist of” or “consisting of,” as used throughout the specification and claims, indicate the inclusion of any recited integer or group of integers, but that no additional integer or group of integers can be added to the specified method, structure, or composition.
As used herein, the term “consists essentially of,” or variations such as “consist essentially of” or “consisting essentially of,” as used throughout the specification and claims, indicate the inclusion of any recited integer or group of integers, and the optional inclusion of any recited integer or group of integers that do not materially change the basic or novel properties of the specified method, structure or composition. See M.P.E.P. § 2111.03.
As used herein, “subject” means any animal, preferably a mammal, most preferably a human. The term “mammal” as used herein, encompasses any mammal. Examples of mammals include, but are not limited to, cows, horses, sheep, pigs, cats, dogs, mice, rats, rabbits, guinea pigs, monkeys, humans, etc., more preferably a human.
The words “right,” “left,” “lower,” and “upper” designate directions in the drawings to which reference is made.
It should also be understood that the terms “about,” “approximately,” “generally,” “substantially,” and like terms, used herein when referring to a dimension or characteristic of a component of the preferred invention, indicate that the described dimension/characteristic is not a strict boundary or parameter and does not exclude minor variations therefrom that are functionally the same or similar, as would be understood by one having ordinary skill in the art. At a minimum, such references that include a numerical parameter would include variations that, using mathematical and industrial principles accepted in the art (e.g., rounding, measurement or other systematic errors, manufacturing tolerances, etc.), would not vary the least significant digit.
As used herein, the term “isolated” means a biological component (such as a nucleic acid, peptide or protein) has been substantially separated, produced apart from, or purified away from other biological components of the organism in which the component naturally occurs, i.e., other chromosomal and extrachromosomal DNA and RNA, and proteins. Nucleic acids, peptides and proteins that have been “isolated” thus include nucleic acids and proteins purified by standard purification methods. “Isolated” nucleic acids, peptides and proteins can be part of a composition and still be isolated if the composition is not part of the native environment of the nucleic acid, peptide, or protein. The term also embraces nucleic acids, peptides and proteins prepared by recombinant expression in a host cell as well as chemically synthesized nucleic acids.
As used herein, the term “polynucleotide,” synonymously referred to as “nucleic acid molecule,” “nucleotides” or “nucleic acids,” refers to any polyribonucleotide or polydeoxyribonucleotide, which can be unmodified RNA or DNA or modified RNA or DNA. “Polynucleotides” include, without limitation single- and double-stranded DNA, DNA that is a mixture of single- and double-stranded regions, single- and double-stranded RNA, and RNA that is mixture of single- and double-stranded regions, hybrid molecules comprising DNA and RNA that can be single-stranded or, more typically, double-stranded or a mixture of single- and double-stranded regions. In addition, “polynucleotide” refers to triple-stranded regions comprising RNA or DNA or both RNA and DNA. The term polynucleotide also includes DNAs or RNAs containing one or more modified bases and DNAs or RNAs with backbones modified for stability or for other reasons. “Modified” bases include, for example, tritylated bases and unusual bases such as inosine. A variety of modifications can be made to DNA and
RNA; thus, “polynucleotide” embraces chemically, enzymatically or metabolically modified forms of polynucleotides as typically found in nature, as well as the chemical forms of DNA and RNA characteristic of viruses and cells. “Polynucleotide” also embraces relatively short nucleic acid chains, often referred to as oligonucleotides.
As used herein, the term “vector” is a replicon in which another nucleic acid segment can be operably inserted so as to bring about the replication or expression of the segment.
As used herein, the term “host cell” refers to a cell comprising a nucleic acid molecule of the invention. The “host cell” can be any type of cell, e.g., a primary cell, a cell in culture, or a cell from a cell line. In one embodiment, a “host cell” is a cell transfected or transduced with a nucleic acid molecule of the invention. In another embodiment, a “host cell” is a progeny or potential progeny of such a transfected or transduced cell. A progeny of a cell may or may not be identical to the parent cell, e.g., due to mutations or environmental influences that can occur in succeeding generations or integration of the nucleic acid molecule into the host cell genome.
The term “expression” as used herein, refers to the biosynthesis of a gene product. The term encompasses the transcription of a gene into RNA. The term also encompasses translation of RNA into one or more polypeptides, and further encompasses all naturally occurring post-transcriptional and post-translational modifications.
The term “antibodies” as used herein, is meant in a broad sense and includes immunoglobulin molecules including monoclonal antibodies (including murine, human, humanized and chimeric monoclonal antibodies), antigen binding fragments, multispecific antibodies, such as bispecific, trispecific, tetraspecific etc., dimeric, tetrameric or multimeric antibodies, single chain antibodies, domain antibodies and any other modified configuration of the immunoglobulin molecule that comprises an antigen binding site of the required specificity. “Full length antibodies” are comprised of two heavy chains (HC) and two light chains (LC) inter-connected by disulfide bonds as well as multimers thereof (e.g. IgM). Each heavy chain is comprised of a heavy chain variable region (VH) and a heavy chain constant region (comprised of domains CH1, hinge, CH2 and CH3). Each light chain is comprised of a light chain variable region (VL) and a light chain constant region (CL). The VH and the VL regions may be further subdivided into regions of hypervariability, termed complementarity determining regions (CDR), interspersed with framework regions (FR). Each VH and VL is composed of three CDRs and four FR segments, arranged from amino-to-carboxy-terminus in the following order: FR1, CDR1, FR2, CDR2, FR3, CDR3 and FR4 Immunoglobulins may be assigned to five major classes, IgA, IgD, IgE, IgG and IgM, depending on the heavy chain constant domain amino acid sequence. IgA and IgG are further sub-classified as the isotypes IgA1, IgA2, IgG1, IgG2, IgG3 and IgG4. Antibody light chains of any vertebrate species may be assigned to one of two clearly distinct types, namely kappa (κ) and lambda (2), based on the amino acid sequences of their constant domains.
The term “monoclonal antibody” as used herein, refers to an antibody obtained from a substantially homogenous population of antibody molecules, i.e., the individual antibodies comprising the population are identical except for possible well-known alterations such as removal of C-terminal lysine from the antibody heavy chain or post-translational modifications such as amino acid isomerization or deamidation, methionine oxidation or asparagine or glutamine deamidation. Monoclonal antibodies typically bind one antigenic epitope. A bispecific monoclonal antibody binds two distinct antigenic epitopes. Monoclonal antibodies may have heterogeneous glycosylation within the antibody population. Monoclonal antibody may be monospecific or multispecific such as bispecific, monovalent, bivalent or multivalent.
The term “human antibody” as used herein, refers to an antibody that is optimized to have minimal immune response when administered to a human subject. Variable regions of human antibody are derived from human immunoglobulin sequences. If human antibody contains a constant region or a portion of the constant region, the constant region is also derived from human immunoglobulin sequences. Human antibody comprises heavy and light chain variable regions that are “derived from” sequences of human origin if the variable regions of the human antibody are obtained from a system that uses human germline immunoglobulin or rearranged immunoglobulin genes. Such exemplary systems are human immunoglobulin gene libraries displayed on phage, and transgenic non-human animals such as mice or rats carrying human immunoglobulin loci. “Human antibody” typically contains amino acid differences when compared to the immunoglobulins expressed in humans due to differences between the systems used to obtain the human antibody and human immunoglobulin loci, introduction of somatic mutations or intentional introduction of substitutions into the frameworks or CDRs, or both. Typically, “human antibody” is at least about 80%, 81%, 82%, 83%, 84%, 85%, 86%, 87%, 88%, 89%, 90%, 91%, 92%, 93%, 94%, 95%, 96%, 97%, 98% or 99% identical in amino acid sequence to an amino acid sequence encoded by human germline immunoglobulin or rearranged immunoglobulin genes. In some cases, “human antibody” may contain consensus framework sequences derived from human framework sequence analyses, for example as described in Knappik et al., (2000) J Mol Biol 296:57-86, or synthetic HCDR3 incorporated into human immunoglobulin gene libraries displayed on phage, for example as described in Shi et al., (2010) J Mol Biol 397:385-96, and in Int. Patent Publ. No. WO2009/085462. Antibodies in which at least one CDR is derived from a non-human species are not included in the definition of “human antibody”.
The term “humanized antibody” as used herein, refers to an antibody in which at least one CDR is derived from non-human species and at least one framework is derived from human immunoglobulin sequences. Humanized antibody may include substitutions in the frameworks so that the frameworks may not be exact copies of expressed human immunoglobulin or human immunoglobulin germline gene sequences.
The term “isolated antibody” refers to an antibody that is substantially free of other cellular material and/or chemicals and encompasses antibodies that are isolated to a higher purity, such as to 80%, 81%, 82%, 83%, 84%, 85%, 86%, 87%, 88%, 89%, 90%, 91%, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99% or 100% purity.
The term “antigen binding fragment” or “antigen binding domain” as used herein, refers to a portion of an immunoglobulin molecule that binds an antigen. Antigen binding fragments may be synthetic, enzymatically obtainable or genetically engineered polypeptides and include the VH, the VL, the VH and the VL, Fab, F (ab′) 2, Fd and Fv fragments, domain antibodies (dAb) consisting of one VH domain or one VL domain, shark variable IgNAR domains, camelized VH domains, minimal recognition units consisting of the amino acid residues that mimic the CDRs of an antibody, such as FR3-CDR3-FR4 portions, the HCDR1, the HCDR2 and/or the HCDR3 and the LCDR1, the LCDR2 and/or the LCDR3. VH and VL domains may be linked together via a synthetic linker to form various types of single chain antibody designs where the VH/VL domains may pair intramolecularly, or intermolecularly in those cases when the VH and VL domains are expressed by separate single chain antibody constructs, to form a monovalent antigen binding site, such as single chain Fv (scFv) or diabody; described for example in Int. Patent Publ. Nos. WO1998/44001, WO1988/01649, WO1994/13804 and WO1992/01047.
The term “bispecific” refers to an antibody that specifically binds two distinct antigens or two distinct epitopes within the same antigen. The bispecific antibody may have cross-reactivity to other related antigens, for example to the same antigen from other species (homologs), such as human or monkey, for example Macaca cynomolgus (cynomolgus, cyno) or Pan troglodytes, or may bind an epitope that is shared between two or more distinct antigens.
The term “multispecific” as used herein, refers to an antibody that specifically binds at least two distinct antigens or at least two distinct epitopes within the same antigen. Multispecific antibody may bind for example two, three, four or five distinct antigens or distinct epitopes within the same antigen.
“Specific binding” or “immunospecific binding” or derivatives thereof when used in the context of antibodies, or antibody fragments, represents binding via domains encoded by immunoglobulin genes or fragments of immunoglobulin genes to one or more epitopes of a protein of interest, without preferentially binding other molecules in a sample containing a mixed population of molecules. Typically, an antibody binds to a cognate antigen with a Kd of less than about 1×10−8 M, as measured by a surface plasmon resonance assay or a cell binding assay.
The term “cancer” refers to a broad group of various diseases characterized by the uncontrolled growth of abnormal cells in the body. Unregulated cell division and growth results in the formation of malignant tumors that invade neighboring tissues and may also metastasize to distant parts of the body through the lymphatic system or bloodstream. A “cancer” or “cancer tissue” can include a tumor.
The term “combination” as used herein, means that two or more therapeutics are administered to a subject together in a mixture, concurrently as single agents or sequentially as single agents in any order.
The term “enhance” or “enhanced” as used herein, refers to enhancement in one or more functions of a test molecule when compared to a control molecule or a combination of test molecules when compared to one or more control molecules. Exemplary functions that can be measured are tumor cell killing, T cell activation, relative or absolute T cell number, Fc-mediated effector function (e.g. ADCC, CDC and/or ADCP) or binding to an Fcγ receptor (FcγR) or FcRn. “Enhanced” may be an enhancement of about 10%, 20%, 30%, 40%, 50%, 60%, 70%, 80%, 90%, 100% or more, or a statistically significant enhancement.
The term “mutation” as used herein, refers to an engineered or naturally occurring alteration in a polypeptide or polynucleotide sequence when compared to a reference sequence. The alteration may be a substitution, insertion or deletion of one or more amino acids or polynucleotides.
The term “non-fixed combination” as used herein, refers to separate pharmaceutical compositions of the T cell redirection therapeutic and the VLA-4 adhesion pathway inhibitor administered as separate entities either simultaneously, concurrently or sequentially with no specific intervening time limits, wherein such administration provides effective levels of the two compounds in the body of the subject.
The term “pharmaceutical composition” as used herein, refers to composition that comprises an active ingredient and a pharmaceutically acceptable carrier.
The term “pharmaceutically acceptable carrier” or “excipient” as used herein, refers to an ingredient in a pharmaceutical composition, other than the active ingredient, which is nontoxic to a subject.
The term “recombinant” as used herein, refers to DNA, antibodies and other proteins that are prepared, expressed, created or isolated by recombinant means when segments from different sources are joined to produce recombinant DNA, antibodies or proteins.
The term “reduce” or “reduced” as used herein, refers to a reduction in one or more functions of a test molecule when compared to a control molecule or a combination of test molecules when compared to one or more control molecules. Exemplary functions that can be measured are tumor cell killing, T cell activation, relative or absolute T cell number, Fc-mediated effector function (e.g. ADCC, CDC and/or ADCP) or binding to an Fcγ receptor (FcγR) or FcRn. “Reduced” may be a reduction of about 10%, 20%, 30%, 40%, 50%, 60%, 70%, 80%, 90%, 100% or more, or a statistically significant enhancement.
The term “refractory” as used herein, refers to a cancer that is not amendable to surgical intervention and is initially unresponsive to therapy.
The term “relapsed” as used herein, refers to a cancer that responded to treatment but then returns.
The term “subject” as used herein, includes any human or nonhuman animal “Nonhuman animal” includes all vertebrates, e.g., mammals and non-mammals, such as nonhuman primates, sheep, dogs, cats, horses, cows, chickens, amphibians, reptiles, etc. Except when noted, the terms “patient” or “subject” are used interchangeably.
The term “therapeutically effective amount” as used herein, refers to an amount effective, at doses and for periods of time necessary, to achieve a desired therapeutic result. A therapeutically effective amount may vary depending on factors such as the disease state, age, sex, and weight of the individual, and the ability of a therapeutic or a combination of therapeutics to elicit a desired response in the individual. Exemplary indicators of an effective therapeutic or combination of therapeutics that include, for example, improved well-being of the patient.
The term “treat” or “treatment” as used herein, refers to both therapeutic treatment and prophylactic or preventative measures, wherein the object is to prevent or slow down (lessen) an undesired physiological change or disorder. Beneficial or desired clinical results include alleviation of symptoms, diminishment of extent of disease, stabilized (i.e., not worsening) state of disease, delay or slowing of disease progression, amelioration or palliation of the disease state, and remission (whether partial or total), whether detectable or undetectable. “Treatment” can also mean prolonging survival as compared to expected survival if a subject was not receiving treatment. Those in need of treatment include those already with the condition or disorder as well as those prone to have the condition or disorder or those in which the condition or disorder is to be prevented.
The term “tumor cell” or a “cancer cell” as used herein, refers to a cancerous, pre-cancerous or transformed cell, either in vivo, ex vivo, or in tissue culture, that has spontaneous or induced phenotypic changes. These changes do not necessarily involve the uptake of new genetic material. Although transformation may arise from infection with a transforming virus and incorporation of new genomic nucleic acid, uptake of exogenous nucleic acid or it can also arise spontaneously or following exposure to a carcinogen, thereby mutating an endogenous gene. Transformation/cancer is exemplified by morphological changes, immortalization of cells, aberrant growth control, foci formation, proliferation, malignancy, modulation of tumor specific marker levels, invasiveness, tumor growth in suitable animal hosts such as nude mice, and the like, in vitro, in vivo, and ex vivo.
The T cell redirection therapeutic (which is also referred to as “T cell redirection bispecific antibody” or “the bispecific antibody” throughout this application) disclosed herein is a molecule containing two or more binding regions, wherein one of the binding regions specifically binds a cell surface antigen (such as a tumor associated antigen (TAA)) on a target cell or tissue and wherein a second binding region of the molecule specifically binds a T cell surface antigen (such as, CD3). This dual/multi-target binding ability recruits T cells to the target cell or tissue leading to the eradication of the target cell or tissue.
The T cell redirection therapeutic used herein may be an antibody, an antibody-derived protein, or, for example, a recombinant protein exhibiting antigen binding sites. In one embodiment, the T cell redirection therapeutics used herein are bispecific antibodies encompass “whole” antibodies, such as whole IgG or IgG-like molecules, and small recombinant formats, such as tandem single chain variable fragment molecules (taFvs), diabodies (Dbs), single chain diabodies (scDbs) and various other derivatives of these (cf. bispecific antibody formats as described by Byrne H. et al. (2013) Trends Biotech, 31 (11): 621-632 with
In one embodiment, the bispecific antibody used herein may be selected from the group comprising Triomabs; hybrid hybridoma (quadroma); Multispecific anticalin platform (Pieris); Diabodies; Single chain diabodies; Tandem single chain Fv fragments; TandAbs, Trispecific Abs (Affimed) (105-110 kDa); Darts (dual affinity retargeting; Macrogenics); Bispecific Xmabs (Xencor); Bispecific T cell engagers (Bites; Amgen; 55 kDa); Triplebodies; Tribody=Fab-scFv Fusion Protein (CreativeBiolabs) multifunctional recombinant antibody derivates (110 kDa); Duobody platform (Genmab); Dock and lock platform; Knob into hole (KIH) platform; Humanized bispecific IgG antibody (REGN1979) (Regeneron); Mab2 bispecific antibodies (F-Star); DVD-Ig=dual variable domain immunoglobulin (Abbvie); kappa-lambda bodies; tetravalent bispecific tandem Ig; and CrossMab.
In a further embodiment, the bispecific antibodies as used herein may be selected from bispecific IgG-like antibodies (BslgG) comprising CrossMab; DAF (two-in-one); DAF (four-in-one); DutaMab; DT-IgG; Knobs-in-holes common LC; Knobs-in-holes assembly; Charge pair; Fab-arm exchange; SEEDbody; Triomab; LUZ-Y; Fcab; KA-body; and Orthogonal Fab. These bispecific antibody formats are shown and described for example in Spiess C., Zhai Q. and Carter P. J. (2015) Molecular Immunology 67:95-106, in particular
In yet a further embodiment, the bispecific antibodies used herein may be selected from IgG-appended antibodies with an additional antigen-binding moiety comprising DVD-IgG; IgG (H)-scFv; scFv-(H) IgG; IgG (L)-scFv; scFV-(L) IgG; IgG (L,H)-Fv; IgG (H)-V; V (H)-IgG; IgG (L)-V; V (L)-IgG; KIH IgG-scFab; 2scFv-IgG; IgG-2scFv; scFv4-Ig; scFv4-Ig; Zybody; and DVI-IgG (four-in-one). These bispecific antibody formats are shown and described for example in Spiess C., Zhai Q. and Carter P. J. (2015) Molecular Immunology 67:95-106, in particular
In a yet further embodiment, the bispecific antibodies used herein may be selected from bispecific antibody fragments comprising Nanobody; Nanobody-HAS; BITE; Diabody; DART; TandAb; scDiabody; sc-Diabody-CH3; Diabody-CH3; Triple Body; Miniantibody; Minibody; TriBi minibody; scFv-CH3 KIH; Fab-scFv; scFv-CH-CL-scFv; F (ab′) 2; F (ab′) 2-scFv2; scFv-KIH; Fab-scFv-Fc; Tetravalent HCAb; scDiabody-Fc; Diabody-Fc; Tandem scFv-Fc; and Intrabody. These bispecific antibody formats are shown and described for example in Spiess C., Zhai Q. and Carter P. J. (2015) Molecular Immunology 67:95-106, in particular
In a yet further embodiment, the bispecific antibodies used herein may be selected from bispecific fusion proteins comprising Dock and Lock; ImmTAC; HSAbody; scDiabody-HAS; and Tandem scFv-Toxin. These bispecific antibody formats are shown and described for example in Spiess C., Zhai Q. and Carter P. J. (2015) Molecular Immunology 67:95-106, in particular
In a yet further embodiment, the bispecific antibodies used herein may be selected from bispecific antibody conjugates comprising IgG-IgG; Cov-X-Body; and scFv1-PEG-scFv2.
These bispecific antibody formats are shown and described for example in Spiess C., Zhai Q. and Carter P. J. (2015) Molecular Immunology 67:95-106, in particular
In yet further embodiment, the bispecific antibodies used herein may be based on any immunoglobulin class (e.g., IgA, IgG, IgM etc.) and subclass (e.g. IgA1, IgA2, IgG1, IgG2, IgG3, IgG4 etc.). In aspect, the bispecific antibodies used herein may have an IgG-like format (based on IgG, also referred to as “IgG type”), which usually comprises two heavy chains and two light chains. Examples of antibodies having an IgG-like format include a quadroma and various IgG-scFv formats (cf: Byrne H. et al. (2013) Trends Biotech, 31 (11): 621-632;
In yet a further embodiment, the bispecific antibodies used herein are in IgG-like antibody formats, which comprise for example hybrid hybridoma (quadroma), knobs-into-holes with common light chain, various IgG-scFv formats, various scFv-IgG formats, two-in-one IgG, dual V domain IgG, IgG-V, and V-IgG, which are shown for example in
Bispecific antibodies, for example, can be produced by three different methods: (i) chemical conjugation, which involves chemical cross-linking; (ii) fusion of two different hybridoma cell lines; or (iii) genetic approaches involving recombinant DNA technology. The fusion of two different hybridomas produces a hybrid-hybridoma (or “quadroma”) secreting a heterogeneous antibody population including bispecific molecules. Alternative approaches included chemical conjugation of two different mAbs and/or smaller antibody fragments. Oxidative reassociation strategies to link two different antibodies or antibody fragments were found to be inefficient due to the presence of side reactions during reoxidation of the multiple native disulfide bonds. Current methods for chemical conjugation focus on the use of homo- or hetero-bifunctional crosslinking reagents. Recombinant DNA technology has yielded the greatest range of bispecific antibodies, through artificial manipulation of genes and represents the most diverse approach for bispecific antibody generation (45 formats in the past two decades; cf. Byrne H. et al. (2013) Trends Biotech, 31 (11): 621-632).
In particular by use of such recombinant DNA technology, also a variety of further multispecific antibodies have emerged recently. The term “multispecific antibodies” refers to proteins having more than one paratope and the ability to bind to two or more different epitopes. Thus, the term “multispecific antibodies” comprises bispecific antibodies as defined above, but typically also protein, e.g. antibody, scaffolds, which bind in particular to three or more different epitopes, i.e. antibodies with three or more paratopes. Such multispecific proteins, in particular with three or more paratopes, are typically achieved by recombinant DNA techniques. In the context of the present invention, the antibody may in particular also have more than two specificities, and, thus, more than two paratopes, as at least two paratopes are required according to the present invention, for example one for the target cell and the other for a T cell. Accordingly, the antibody to be used according to the invention may have further paratopes, in particular relating to further specificities, in addition to the two paratopes. Thus, the present invention also comprises multispecific antibodies. It is thus understood that the invention is not limited to bispecific antibodies, although it is referred herein in particular to bispecific antibodies, which represent the minimum requirements. What is said herein about bispecific antibodies may therefore also apply to multispecific antibodies.
The bispecific antibodies, and multispecific antibodies as defined above, are able to redirect effector cells against target cells that play key roles in disease processes. In particular, the T cell redirection bispecific antibodies used herein can, for example, bind to T cell receptor (TCR) complexes and “redirect” T cells to target cells, such as for example tumor cells. To this end, such bispecific antibodies used herein typically has at least one specificity, e.g. at least one paratope, for recruiting T cells, which is specific for T cells, preferably for T cell surface antigens, e.g. CD3, and at least one other specificity, e.g. at least one paratope, for directing T cells to tumor cells, which is specific for tumor cells, preferably a TAA on tumor cells. Such a “redirection” of a T cell to a tumor cell by a T cell redirection bispecific antibody typically results in T-cell mediated cell killing of the tumor cell.
In one embodiment, the T cell redirection therapeutic used herein comprise a first binding region with specificity against a T cell surface antigen and a second binding region with specificity against a TAA on a tumor cell.
In a further embodiment, the T cell surface antigen may be selected from CD3, CD2, CD4, CD5, CD6, CD8, CD28, CD40L, CD44, CD137, KI2L4, NKG2E, NKG2D, NKG2F, BTNL3, CD186, BTNL8, PD-1, CD195, and NKG2C. Or, the T cell surface antigen is CD3.
In a yet further embodiment, the TAA may be selected from B-cell maturation antigen (BCMA), CD123, GPRC5D, CD33, CD19, PSMA, TMEFF2, CD20, CD10, CD21, CD22, CD25, CD30, CD34, CD37, CD44v6, CD45, CD52, CD133, ROR1, B7-H6, B7-H3, HM1.24, SLAMF7, Fms-like tyrosine kinase 3 (FLT-3, CD135), chondroitin sulfate proteoglycan 4 (CSPG4, melanoma-associated chondroitin sulfate proteoglycan), epidermal growth factor receptor (EGFR), Her2, Her3, IGFR, IL3R, fibroblast activating protein (FAP), CDCP1, Derlin1, Tenascin, frizzled 1-10, VEGFR2 (KDR/FLK1), VEGFR3 (FLT4, CD309), PDGFR-alpha (CD140a), PDGFR-beta (CD140b), endoglin, CLEC14, Tem1-8, or Tie2. Further exemplary TAA on the tumor cell include A33, CAMPATH-1 (CDw52), Carcinoembryonic antigen (CEA), Carboanhydrase IX (MN/CA IX), de2-7, EGFRVIII, EpCAM, Ep-CAM, folate-binding protein, G250, c-Kit (CD117), CSFIR (CD115), HLA-DR, IGFR, IL-2 receptor, IL3R, MCSP (melanoma-associated cell surface chondroitin sulphate proteoglycane), Muc-1, prostate stem cell antigen (PSCA), prostate specific antigen (PSA), hK2, TAG-72 or a tumor cell neoantigen. Or, the TAA may be selected from BCMA, CD123, GPRC5D, CD33, CD19, PSMA, TMEFF2, CD20, CD22, CD25, CD52, ROR1, HM1.24, CD38 and SLAMF7. Or, the TAA may be selected from BCMA or CD123.
In one embodiment, the T cell redirection therapeutic is a BCMAxCD3 bispecific antibody that immunospecifically binds to BCMA+ MM cells and CD3 T cells. The BCMAxCD3 bispecific antibodies may be selected from those disclosed in WO2007117600, WO2009132058, WO2012066058, WO2012143498, WO2013072406, WO2013072415, WO2014122144, and U.S. Pat. No. 10,072,088, which are incorporated herein by reference in their entirety.
In one embodiment, the BCMAxCD3 bispecific antibody is a bispecific DuoBody® antibody as those disclosed in U.S. Pat. No. 10,072,088, which is incorporated herein by reference in its entirety. The BCMAxCD3 bispecific antibody comprises a first heavy chain (HC1), a first light chain (LC1), a second heavy chain (HC2), and a second light chain (LC2), in which HC1 and LC1 pair to form a first antigen-binding site that immunospecifically binds BCMA, and HC2 and LC2 pair to form a second antigen-binding site that immunospecifically binds CD3. In one embodiment, the BCMAxCD3 antibody comprises HC1 having the amino acid sequence of SEQ ID NO: 1, LC1 having the amino acid sequence of SEQ ID NO: 2, HC2 having the amino acid sequence of SEQ ID NO: 3, and LC2 having the amino acid sequence of SEQ ID NO: 4, wherein HC1 and LC1 pair to form a first antigen-binding site that immunospecifically binds BCMA, and HC2 and LC2 pair to form a second antigen-binding site that immunospecifically binds CD3. In one embodiment, the BCMAxCD3 antibody comprises HC1 having the amino acid sequence of SEQ ID NO: 5, LC1 having the amino acid sequence of SEQ ID NO: 6, HC2 having the amino acid sequence of SEQ ID NO: 3, and LC2 having the amino acid sequence of SEQ ID NO: 4, wherein HC1 and LC1 pair to form a first antigen-binding site that immunospecifically binds BCMA, and HC2 and LC2 pair to form a second antigen-binding site that immunospecifically binds CD3.
In one embodiment, the T cell redirection therapeutic is a CD123×CD3 bispecific antibody that immunospecifically binds to CD123+ AML cells and CD3 T cells. The CD123×CD3 bispecific antibody may be a bispecific DuoBody® antibody as those disclosed in U.S. Pat. No. 9,850,310, which is incorporated herein by reference in its entirety. In one embodiment, the CD123×CD3 antibody comprises a HC1 having the amino acid sequence of SEQ ID NO: 7, a LC1 having the amino acid sequence of SEQ ID NO: 8, a HC2 having the amino acid sequence of SEQ ID NO: 9, and a LC2 having the amino acid sequence of SEQ ID NO: 10, wherein HC1 and LC1 pair to form a first antigen-binding site that immunospecifically binds CD123, and HC2 and LC2 pair to form a second antigen-binding site that immunospecifically binds CD3.
Very late antigen-4 (VLA-4), also known as called a4ß1, is a member of the ß1 integrin family of cell surface receptors. VLA-4 contains a a4 chain and a ß1 chain and is involved in cell-cell interactions. Its expression is mainly restricted to lymphoid and myeloid cells. It is a key player in cell adhesion. Studies also have shown that VLA-4 plays an important role in mediating AML/MM-stroma interactions in BM. Vascular cell adhesion molecule-1 (VCAM-1) (expressed by osteoblasts and endothelial cells) and fibronectin (a component of the extracellular matrix) are two ligands for VLA-4.
The VLA-4 adhesion pathway inhibitors used herein may be any molecule that is capable of blocking the VLA-4 mediated adhesion pathway.
For example, the VLA-4 adhesion pathway inhibitors used herein may be anti-VLA-4 antibody or VLA-4-binding fragments prepared from the anti-VLA-4 antibody, such as Fab, Fab′, F (ab′) 2, and F (v) fragments; heavy chain monomers or dimers; light chain monomers or dimers; and dimers consisting of one heavy chain and one light chain are also contemplated herein. Such antibody fragments may be produced by chemical methods, e.g., by cleaving an intact antibody with a protease, such as pepsin or papain, or via recombinant DNA techniques, e.g., by using host cells transformed with truncated heavy and/or light chain genes. Heavy and light chain monomers may similarly be produced by treating an intact antibody with a reducing agent such as dithiothreitol or β-mercaptoethanol or by using host cells transformed with DNA encoding either the desired heavy chain or light chain or both, or, such as, a monoclonal antibody or an antibody fragment thereof.
Any suitable anti-VLA-4 antibodies or VLA-4-binding fragments capable of blocking the VLA-4-mediated adhesion pathway may be used herein, which include, without limitation, natalizumab and those disclosed in U.S. Pat. No. 6,602,503 and U.S. Patent Application Publication No. US20140161794 A1, which are incorporated herein by reference in their entirety.
In certain embodiments, the VLA-4 adhesion pathway inhibitors used herein may be VLA-4 antagonists that are capable of blocking the VLA-4-mediated adhesion pathway. Exemplary VLA-4 antagonists used herein include, without limitation, VLA-4 antagonists from Tocris Bioscience (e.g., BIO1211, TCS2314, BIO5192, and TR14035).
Inasmuch as VCAM-1 and fibronectin are ligands of VLA-4, the VLA-4 adhesion pathway inhibitors also may include antagonists (including antibodies) of VCAM-1 or fibronectin.
Further disclosed herein are pharmaceutical compositions comprising a T cell redirection therapeutic, as disclosed above, and a VLA-4 adhesion pathway inhibitor, as disclosed above, and a pharmaceutically acceptable carrier. Polynucleotides, polypeptides, host cells, and/or engineered immune cells of the invention and compositions comprising them are also useful in the manufacture of a medicament for therapeutic applications mentioned herein. In certain embodiments, the pharmaceutical compositions are separate compositions comprising a T cell redirection therapeutic, as disclosed above, and a VLA-4 adhesion pathway inhibitor, as disclosed above, and a pharmaceutically acceptable carrier. In other embodiments, the pharmaceutical compositions are not separate compositions and the pharmaceutical compositions comprises a T cell redirection therapeutic, as disclosed above, and a VLA-4 adhesion pathway inhibitor, as disclosed above, and a pharmaceutically acceptable carrier.
As used herein, the term “carrier” refers to any excipient, diluent, filler, salt, buffer, stabilizer, solubilizer, oil, lipid, lipid containing vesicle, microsphere, liposomal encapsulation, or other material well known in the art for use in pharmaceutical formulations. It will be understood that the characteristics of the carrier, excipient or diluent will depend on the route of administration for a particular application. As used herein, the term “pharmaceutically acceptable carrier” refers to a non-toxic material that does not interfere with the effectiveness of a composition according to the invention or the biological activity of a composition according to the invention. According to particular embodiments, in view of the present disclosure, any pharmaceutically acceptable carrier suitable for use in a polynucleotide, polypeptide, host cell, and/or engineered immune cell pharmaceutical composition can be used in the invention.
The formulation of pharmaceutically active ingredients with pharmaceutically acceptable carriers is known in the art, e.g., Remington: The Science and Practice of Pharmacy (e.g. 21st edition (2005), and any later editions). Non-limiting examples of additional ingredients include: buffers, diluents, solvents, tonicity regulating agents, preservatives, stabilizers, and chelating agents. One or more pharmaceutically acceptable carrier may be used in formulating the pharmaceutical compositions of the invention.
In one embodiment of the disclosure, the pharmaceutical composition is a liquid formulation. A preferred example of a liquid formulation is an aqueous formulation, i.e., a formulation comprising water. The liquid formulation can comprise a solution, a suspension, an emulsion, a microemulsion, a gel, and the like.
In one embodiment, the pharmaceutical composition can be formulated as an injectable which can be injected, for example, via an injection device (e.g., a syringe or an infusion pump). The injection can be delivered subcutaneously, intramuscularly, intraperitoneally, intravitreally, or intravenously, for example.
In another embodiment, the pharmaceutical composition is a solid formulation, e.g., a freeze-dried or spray-dried composition, which can be used as is, or whereto the physician or the patient adds solvents, and/or diluents prior to use.
In another general aspect, the invention relates to a method of treating a cancer in a subject in need thereof, comprising administering to the subject pharmaceutical compositions comprising the T cell redirection therapeutic and the VLA-4 adhesion pathway inhibitor as disclosed herein.
In another general aspect, the invention relates to a method of killing cancer cells comprising subjecting the cancer cells to compositions comprising the T cell redirection therapeutic and the VLA-4 adhesion pathway inhibitor, as disclosed herein.
The subject may have a newly diagnosed cancer or is relapsed or refractory to a prior anti-cancer therapy. The cancer may be a hematological malignancy or a solid tumor.
According to embodiments of the invention, the pharmaceutical compositions comprise a therapeutically effective amount of the T cell redirection therapeutic and the VLA-4 adhesion pathway inhibitor as disclosed herein. As used herein, the term “therapeutically effective amount” refers to an amount of an active ingredient or component that elicits the desired biological or medicinal response in a subject. A therapeutically effective amount can be determined empirically and in a routine manner, in relation to the stated purpose.
As used herein with reference to the T cell redirection therapeutic and the VLA-4 adhesion pathway inhibitor, a therapeutically effective amount means an amount of the T cell redirection therapeutic in combination with the VLA-4 adhesion pathway inhibitor that modulates an immune response in a subject in need thereof. Also, as used herein with reference to the T cell redirection therapeutic, a therapeutically effective amount means an amount of the T cell redirection therapeutic with the VLA-4 adhesion pathway inhibitor that results in treatment of a disease, disorder, or condition; prevents or slows the progression of the disease, disorder, or condition; or reduces or completely alleviates symptoms associated with the disease, disorder, or condition.
The therapeutically effective amount or dosage can vary according to various factors, such as the disease, disorder or condition to be treated, the means of administration, the target site, the physiological state of the subject (including, e.g., age, body weight, health), whether the subject is a human or an animal, other medications administered, and whether the treatment is prophylactic or therapeutic. Treatment dosages are optimally titrated to optimize safety and efficacy.
According to particular embodiments, the compositions described herein are formulated to be suitable for the intended route of administration to a subject. For example, the compositions described herein can be formulated to be suitable for intravenous, subcutaneous, or intramuscular administration.
As used herein, the terms “treat,” “treating,” and “treatment” are all intended to refer to an amelioration or reversal of at least one measurable physical parameter related to a cancer, which is not necessarily discernible in the subject, but can be discernible in the subject. The terms “treat,” “treating,” and “treatment,” can also refer to causing regression, preventing the progression, or at least slowing down the progression of the disease, disorder, or condition. In a particular embodiment, “treat,” “treating,” and “treatment” refer to an alleviation, prevention of the development or onset, or reduction in the duration of one or more symptoms associated with the disease, disorder, or condition, such as a tumor or more preferably a cancer. In a particular embodiment, “treat,” “treating,” and “treatment” refer to prevention of the recurrence of the disease, disorder, or condition. In a particular embodiment, “treat,” “treating,” and “treatment” refer to an increase in the survival of a subject having the disease, disorder, or condition. In a particular embodiment, “treat,” “treating,” and “treatment” refer to elimination of the disease, disorder, or condition in the subject.
According to particular embodiments, provided are pharmaceutical compositions used in the treatment of a cancer. For cancer therapy, the provided pharmaceutical compositions can be used in combination with another treatment including, but not limited to, a chemotherapy, an anti-CD20 mAb, an anti-TIM-3 mAb, an anti-LAG-3 mAb, an anti-EGFR mAb, an anti-HER-2 mAb, an anti-CD19 mAb, an anti-CD33 mAb, an anti-CD47 mAb, an anti-CD73 mAb, an anti-DLL-3 mAb, an anti-apelin mAb, an anti-TIP-1 mAb, an anti-FOLR1 mAb, an anti-CTLA-4 mAb, an anti-PD-L1 mAb, an anti-PD-1 mAb, other immuno-oncology drugs, an antiangiogenic agent, a radiation therapy, an antibody-drug conjugate (ADC), a targeted therapy, or other anticancer drugs.
According to particular embodiments, the methods of treating cancer in a subject in need thereof comprise administering to the subject T cell redirection therapeutic in combination with a VLA-4 adhesion pathway inhibitor as disclosed herein.
As used herein, the term “in combination,” in the context of the administration of two or more therapies to a subject, refers to the use of more than one therapy. The use of the term “in combination” does not restrict the order in which therapies are administered to a subject. For example, a first therapy (e.g., the T cell redirection therapeutic described herein) can be administered prior to (e.g., 5 minutes, 15 minutes, 30 minutes, 45 minutes, 1 hour, 2 hours, 4 hours, 6 hours, 12 hours, 16 hours, 24 hours, 48 hours, 72 hours, 96 hours, 1 week, 2 weeks, 3 weeks, 4 weeks, 5 weeks, 6 weeks, 8 weeks, or 12 weeks before), concomitantly with, or subsequent to (e.g., 5 minutes, 15 minutes, 30 minutes, 45 minutes, 1 hour, 2 hours, 4 hours, 6 hours, 12 hours, 16 hours, 24 hours, 48 hours, 72 hours, 96 hours, 1 week, 2 weeks, 3 weeks, 4 weeks, 5 weeks, 6 weeks, 8 weeks, or 12 weeks after) the administration of a second therapy (e.g., the VLA-4 adhesion pathway inhibitor) to a subject.
In another general aspect, provided herein are kits, unit dosages, and articles of manufacture comprising the T cell redirection therapeutic as disclosed herein, the VLA-4 adhesion pathway inhibitor as disclosed herein, and optionally a pharmaceutical carrier. In certain embodiments, the kit preferably provides instructions for its use.
In another particular aspect, provided herein are kits comprising (1) a T cell redirection therapeutic as disclosed herein, and (2) a VLA-4 adhesion pathway inhibitor as disclosed herein.
In another particular aspect, provided herein are kits comprising pharmaceutical compositions comprising a pharmaceutically acceptable carrier and (1) a T cell redirection therapeutic as disclosed herein, and (2) a VLA-4 adhesion pathway inhibitor as disclosed herein.
Bispecific antibodies were produced targeting human CD123 and CD3 or targeting human BCMA and CD3, in which the anti-CD123 or anti-BCMA antibody and the anti-CD3 antibody were joined together post-purification by generating a controlled fragment antigen binding arm exchange using the Genmab technology (17, 18). This resulted in a monovalent binding, bi-functional DuoBody® antibody which specifically binds to human CD123+ AML or human BCMA+ MM cells and CD3 T cells (
Tumor cell lines were labelled with Carboxyfluorescein succinimidyl ester (CFSE) and co-cultured with thawed purified frozen T cells in the presence or absence of stromal cell lines (HS-5 and HS-27a), primary mesenchymal stromal cells (MSC) and CD105+ endothelial cells. 24 hours later, bispecific antibodies were added to the wells and the plates were incubated at 37° C. with 5% CO2 for 48 hours. The cells were then stained for various markers before analyzing on the flow cytometers. For the trans-well related experiments, the assay was performed in 96 well U bottom plates with or without 0.4 μm transwell inserts (HTS TRANSWL96, Corning). For the IncuCyte® related experiments, red fluorescent OCI-AML5 cells (OCI-AML5-NucLight Red) and green HS-5 (HS-5-NucLight Green) were used.
For the ex vivo assays, HS-5 cells were plated prior to addition of AML peripheral blood mononuclear Cells (PBMCs) or MM bone marrow mononuclear cells (BMMCs). CD123×CD3 or BCMA×CD3 or null×CD3 bispecific antibodies (1 μg/ml) with or without anti-VLA4 antibody (5 μg/ml) were added. 72 hours later, depletion of CD123+ blasts or CD138+ MM plasma cells was monitored via flow cytometry. Additionally, expansion of CD8 T cells as well as their activation status (upregulation of CD25) were assessed. In vivo MOLM-13 xenograft model
Human PBMC (1×107 cells/mouse) were inoculated intravenously (iv) 6-7 days prior to tumor cell implantation. On study day 0 mice were implanted subcutaneously (sc) with 1×106 MOLM-13 cells and two concentrations of HS-5 bone marrow stromal cells, 2×105 and 5×105. Treatments with CD123×CD3 (0.04 mg/kg and 0.008 mg/kg, n=8) or vehicle PBS controls (n=5) were given intravenously (iv) every three days (q3d) for 5 doses. Individual mice were monitored for body weight loss and tumor growth inhibition twice weekly for the duration of the study. In the case of the in vivo study with the VLA-4 blocking antibody, treatments with CD123×CD3 bispecific antibody (0.008 mg/kg, n=8 or 9) or PBS vehicle control (n=5) were given iv and the anti-VLA-4 antibody (5 mg/kg) given intraperitoneally (ip). No animals were excluded from the analysis.
Data were analyzed by GraphPad software Prism version 8 (SAS Institutes, Cary, NC). Browne-Forsythe and Welch ANOVA test analysis was applied for
KG1, H929, RPMI-8226, MM.1S, HS-5 and HS-27a cell lines were obtained from the American Tissue Culture Collection (Manassas, VA). MOLM 13 and OCI-AML5 were obtained from Deutsche Sammlung von Mikroorganismen und Zellkulturen (DSMZ, Germany). Primary mesenchymal stem cells cryopreserved from normal human donors were purchased from Lonza (Basel, Switzerland) and CD105+ bone marrow endothelial cells were purchased from All Cells (Alameda, California). IncuCyte® NucLight Green or NucLight Red Lentivirus Reagent (EFla, Puro) was purchased from Essen Bioscience (Ann Arbor, Michigan) and was used according to manufacturer's instructions to generate HS-5-NucLight Green and OCI-AML5-NucLight Red cells. Puromycin treatment was used to select fluorescent positive cell lines. While the cell lines were not authenticated recently, they tested negative for mycoplasma contamination.
Binding Assay with Bispecific Antibodies
All tumor cells were centrifuged, washed twice with Dulbecco's phosphate-buffered saline (DPBS) and 1×104 cells were added to the center of each well of a 96 well U bottom plate along with fragment crystallizable (Fc) block (human IgG1 fragment) which was added at 2 mg/mL for 10 minutes. Serially diluted bispecific antibodies were added to the appropriate wells. Plates were incubated in the dark at 37° C. with 5% CO2 for 4 hours. The cells were then washed with DPBS and binding of the bispecific antibody was detected by staining with mouse anti-human IgG4 (Southern Biotech, clone HP6025, catalog #9200-09) and LIVE/DEAD (L/D; Invitrogen, catalog #L34976) for 30 minutes. Finally, cells were washed, resuspended in stain buffer, and analyzed on the FACSCanto II flow cytometer (BD Biosciences). Geometric mean fluorescence intensity (gMFI) was plotted in Prism version 7 (GraphPad). The X axis was log transformed and a 4 parameter non-linear curve fit was applied.
In Vitro Cytotoxicity Assays with Cell Lines
Tumor cell lines (KG1, MOLM 13, OCI-AML5, H929, RPMI-8226 and MM.1S) were counted and washed with DPBS before incubation with CFSE (resuspended in 150 μL dimethyl sulfoxide and diluted 1:10,000) at 1×107 cells/mL of CFSE for 8 minutes at RT. Staining was quenched with HI FBS. Cells were washed in complete medium before resuspension at 2×105 cells/mL in complete medium containing 1 mg/mL human IgG1 fragment, then incubated for 15 minutes. The purified frozen T cells (obtained from BioIVT (Westport, New York)) were thawed and resuspended at 1×106 cells/mL. The T cells were isolated from whole blood by using Ficoll gradient (to isolate mononuclear cells) and negative selection post incubation at room temperature with an antibody cocktail (CD16, CD19, CD36, CD56 and CD66b) to remove the ‘unwanted’ cells. The stroma cell lines (HS-5 and HS-27a) were harvested, washed, counted and resuspended at 4×105 cells/mL. In the case of primary mesenchymal stromal cells (MSC) and CD105+ endothelial cells, frozen aliquots sourced from Lonza and All cells respectively, were thawed and resuspended at 4×105 cells/mL. Finally, 50 μL of purified T cells, 50 μL of stromal cells and 100 μL of labeled tumor cells were combined in each well of a 96 well U bottom plate with 0.5 mg/mL human IgG1 fragment. 24 hours later, the test antibodies were added to the wells. The antibodies were diluted to a final starting concentration of 133 nM in DPBS or complete medium. The antibodies were further diluted 3-fold and added to appropriate wells. All plates were incubated at 37° C. with 5% CO2 for 48 hours post addition of antibodies. The cells were then washed with DPBS and stained for various markers before analyzing on the flow cytometers.
For the proliferation experiments, the in vitro assays were performed as detailed above except that here T cells were labelled with the CFSE dye prior to co-culture, thus allowing assessment of proliferation by monitoring CFSE 96 hours post addition of the bispecific antibodies.
For the transwell related experiments, the assay was performed in 96 well U bottom plates with or without 0.4 μM transwell inserts (HTS TRANSWL96, Corning). The stromal cells were either combined with T and tumor cells or separated from the T and tumor cells by seeding on the transwell insert.
For the IncuCyte® related experiments, red fluorescent OCI-AML5 cells were used (OCI-AML5-NucLight Red) and green HS-5 (HS-5-NucLight Green). Tumor, stroma and T cells were washed and combined in phenol-red-free RPMI/10% HI FBS for these assays. Images of red and green objects (indicating red OCI-AML5 and green HS-5) per well were recorded by the IncuCyte® Zoom every 6 hours over a time course of 120 hours.
For blocking experiments, the following inhibitors and neutralizing antibodies were used: Bcl-2 inhibitor (HA14-1), anti-human CXCR4 (12G5) and anti-human ITGA4/VLA4 (2B4) antibody were purchased from R&D systems (Minneapolis, Minnesota).
Ex Vivo Cytotoxicity Assays with Primary AML and MM Patient Samples
30,000 or 600,000 HS-5 cells were plated per well of a 6 well plate overnight. Next morning, media was carefully removed before replacing with 3×106 primary AML or MM PBMCs and BMMC, respectively in αMEM+10% FBS with 0.5 mg/mL human IgG1 fragment. Next, CD123×CD3, BCMA×CD3 or null×CD3 bispecific antibodies (1 μg/ml) with or without anti-VLA4 antibody (5 μg/ml) were added. 72 hours later, depletion of CD123+ blasts or CD138+ MM plasma cells was monitored via flow cytometry. Additionally, expansion of CD8 T cells as well as their activation status (upregulation of CD25) were assessed.
Antibodies for FACS included the following anti-human antibodies: CD278/ICOS (DX-29), CD4 (SK3), Granzyme B (GB11) (purchased from BD Biosciences), CD8 (RPA-T8), 41BB/CD137 (4B4-1), CD25 (BC96), Perforin (dG9), Tbet (4b10), PD-1/CD279 (EH12.2H7), TIM3 (F38-2E2), CD33 (WM53), CD38 (HIT2), CD123 (6H6), CD138 (MI15) (purchased from BioLegend), LAG3 (3DS223H) (purchased from eBiosciences) and LIVE/DEAD Near-IR (Life Technologies).
For FACS analysis, the plates were centrifuged at 1,500 rpm for 5 minutes. The cells were then washed with DPBS and stained for T cell activation markers and for cytotoxicity for 30 minutes. Finally, cells were washed and resuspended in stain buffer. For intracellular staining, cells were fixed and permeabilised using the IC Staining kit (eBiosciences) according to manufacturer's instructions with minor modifications (washing four times with permeabilization buffer before incubation with intracellular cytokine antibody).
Data was acquired on a FACSCanto II (BD Biosciences) or LSRFortessa ((BD Biosciences). Tumor cell death was assessed by gating on forward-scatter (FSC) and side-scatter (SSC) to identify cell populations, then CFSE+ tumor events, and finally LIVE/DEAD Near-IR to assess tumor cell cytotoxicity. The L/D+ gate was drawn after comparing to the PBS treated and isotype controls. These controls also help account for errors related to non-specific binding of antibodies or spillover effects. T cell activation was assessed by gating on FSC and SSC to identify cell populations, CFSE-events, live cells, then looking for positive staining for several markers. The percentage of either dead tumor cells was graphed using Prism 8 and analyzed with a 4 parameter non-linear regression curve fit. For the T cell activation markers, the geometric mean fluorescent intensities of various markers were analyzed via FlowJo software and were graphed using Prism 8.
Automatic western blots were performed using a Wes automated system (ProteinSimple, California, USA) according to manufacturer's instructions. Samples were mixed with a 5× sample buffer containing SDS, DTT and fluorescent molecular weight standards and heated at 95° C. for 5 min and then, loaded onto a plate prefilled with stacking and separation matrices, along with blocking and wash buffers, antibody solutions and detection reagents. Default settings were used for the analysis. The following anti-human antibodies purchased from Cell Signaling Technology (Danvers, MA) were used to detect proteins: Bcl-2 (#2872), Phospho-p38 MAPK (Thr180/Tyr182) (D3F9) XP® Rabbit mAb (#4511), Phospho-Akt (Ser473) (D9E) XP® Rabbit mAb (#4060) and β-Actin (D6A8) Rabbit mAb (#8457).
Female NSG (NOD scid gamma or NOD.Cg-Prkdescid I12rgtm 1 Wjl/SzJ) mice (The Jackson Laboratory, Bar Harbor, ME) were utilized when they were approximately 6-8 weeks of age and weighed 20 g. All animals were allowed to acclimate and recover from any shipping-related stress for a minimum of 5 days prior to experimental use. Reverse osmosis (RO) chlorinated water and irradiated food (Laboratory Autoclavable Rodent Diet 5010, Lab Diet) were provided ad libitum, and the animals were maintained on a 12 hour light and dark cycle. Cages, bedding and water bottles were autoclaved before use and changed weekly. All experiments were carried out in accordance with The Guide for the Care and Use of Laboratory Animals and were approved by the Institutional Animal Care and Use Committee of Janssen R&D, Spring House, PA.
BM Stromal Cells Protect AML and MM Cell Lines from CD3 Bispecific Antibodies and T Cell-Mediated Cytotoxicity
The BM niche is characterized by its protective and immune-suppressive microenvironment. BM stromal cells were used to mimic the BM niche as they are a major cellular component of the endosteal and vascular niches that govern fundamental hematopoietic stem cells (HSC) cell fate decisions including self-renewal, survival, differentiation, and proliferation (19, 20). BM stromal cells are also documented to mediate immune-suppression (13, 21) while also activating multiple survival and anti-apoptotic pathways in tumor cells, thus allowing them to become resistant to different types of therapy (22). AML or MM cell lines were co-cultured with T cells and bispecific antibodies in the absence or presence of BM stromal cells. Bispecific antibodies targeting either CD123 or BCMA and CD3 (tool antibodies) were used. Binding, killing and T cell activation data demonstrating efficacy of these antibodies are shown in
Next, the mechanisms underlying stromal inhibition of bispecific antibody activity was investigated. To this end, the phenotype of T cells was assessed in T cell-tumor co-culture cytotoxicity assays in the absence or presence of stromal cells. Treatment with CD123×CD3 bispecific antibody in the absence of stroma resulted in the upregulation of activation markers including CD25, CD137 and ICOS with concomitant increases in checkpoint markers including PD1, LAG3 and TIM3 in CD8+ T cells (
In addition to immune suppression, whether stromal-mediated activation of multiple pro-survival and anti-apoptotic pathways in leukemic and myeloma tumor cells could be an additional mechanism to mediate resistance against therapy was investigated (30). Increased phosphorylation of phosphoinositide 3-kinase (PI3K) and Akt and increased protein expression of Bcl-2 in KG-1 cells that were cultured with HS-5 stromal cells and not in KG-1 or HS-5 cells alone were observed (
Next, the relative contribution of T cell immune suppression and upregulation of pro-survival pathways to the phenotype of reduced efficacy of CD3 redirection was investigated. Given that Bcl-2 has been directly implicated in survival and resistance of AML and MM cells from several therapies (30, 31), cytotoxicity assays were performed in the presence of stroma with or without the addition of a Bcl-2 inhibitor HA14-1. While the inhibitor successfully prevented expression of Bcl-2 (
Next, whether stromal cells could protect tumor cells from bispecific antibodies-T cell-mediated cytotoxicity in vivo was investigated. To this end, human PBMCs were intravenously inoculated in female NSG mice and one week later, MOLM-13 with or without HS-5 bone marrow stromal cells were implanted subcutaneously (sc) on the flank of the mice. Mice were then treated with CD123×CD3 (8 μg/kg) starting on day 5 post tumor cell implant twice weekly for a total of 5 treatments. Treatment with CD123×CD3 significantly inhibited sc tumor growth (tumor growth inhibition (TGI Day 25)=78%, p<0.0001) in the MOLM-13 alone group compared to PBS or CD3×null controls (
Stromal cells can mediate immune-suppression and protect tumor cells from cytotoxicity via secretion of soluble factors including immune suppressive mediators such as IL-10, TGF-β and PGE2 or growth factors such as stem cell factor (SCF), IL-7, IL-15, CXCL-12 among others (21, 33). Additionally, stromal cells can directly interact with tumor cells via adhesion pathways inducing resistance (34) and thereby protect malignant cells from T cell-mediated cytotoxicity in a cell-cell contact dependent manner. Visual examination of the cytotoxicity assays revealed that residual leukemic cells not killed by bispecific antibody-T cell-mediated cytotoxicity clustered closely around stromal cells (
The adhesion pathways were investigated to determine which one was critical for stromal inhibition of bispecific antibody efficacy. CXCR4 and VLA-4 were focused on because of their documented roles in mediating AML/MM-stroma interactions in the BM (34). Using blocking antibodies against either VLA-4 or CXCR4 (purchased from R&D Systems), it was observed that unlike CXCR4 inhibition which failed to rescue bispecific antibody-mediated cytotoxicity responses in the presence of stroma, VLA-4 inhibition reversed (50-60%) stromal-mediated protection of KG-1 and MOLM-13 from CD123×CD3 bispecific antibody-T cell cytotoxicity (
Previous in vivo results had shown that the efficacy of CD123×CD3 was attenuated in treating MOLM-13 tumors with HS-5 bone marrow stromal cells. To determine if the anti-tumor effect can be restored, an anti-VLA-4 neutralizing antibody was combined with CD123×CD3 for the treatment of MOLM-13-bearing mice. Similar to the prior observations, CD123×CD3 (8 μg/kg) promoted a TGI Day 24 of 52.3% (p≤0.0001) compared to PBS treated controls while the same dose of bispecific antibody had minimal effects against MOLM-13 tumors co-injected with HS-5 cells (TGI Day 23=7.6%) (
The findings were then verified with primary frozen/thawed AML and MM samples. Given that primary tumor cells can be a challenge to maintain in culture without exogenous supplementation of cytokines or stromal support, we performed ex vivo cultures of AML/MM samples with varying numbers of stromal cells (representative gating strategy shown in
The complexity of the BM niche has truly been appreciated in the recent years with significant advancements in understanding the molecular and cellular factors that contribute towards maintenance and regulation of hematopoietic stem cells. In the context of hematological malignancies, the same factors can be exploited by cancer stem cells for protection from and resistance to several anti-cancer therapies, thus contributing to minimal residual disease.
The results herein show for the first time how otherwise effective T cell therapeutics can be thwarted by components of the BM microenvironment. Specifically, it was observed that in the presence of BM stromal cells, AML and MM cancer cells were protected from cytotoxicity mediated by T cell and bispecific antibodies. Reduced killing of cancer cells correlated with blunted T cell activation and effector responses. Blocking cell-cell interactions specifically those mediated by the VLA-4 pathway reversed T cell immune suppression leading to increased killing of AML and MM cancer cells. The results thus reaffirm that the BM microenvironment is a formidable factor that needs to be considered even in the context of otherwise potent and effective immune therapies such as CD3 redirection. The results also provide rationale and evidence for combining agents that interfere with adhesion with CD3 redirection therapeutics for better and more complete elimination of MRD.
While it is demonstrated that blocking VLA-4 reverses stromal inhibition of efficacy of bispecific T cell-mediated cytotoxicity and immunosuppression, the mechanisms underlying this regulation remain to be delineated. VLA-4 is expressed on T cells and can provide costimulatory signals resulting in activation of T lymphocytes in addition to mediating adhesion and transendothelial migration of leukocytes (35-38). Clinical studies in multiple sclerosis patients with natalizumab, a humanized monoclonal IgG4 VLA-4 blocking antibody approved for MS, have shown that the drug not only increases the number of CD4+ and CD8+ T cells in the peripheral blood (39) but also stimulates CD4+ and CD8+ T cell production of more IL-2, TNF-α, IFN-γ and IL-17 (40-43). While the results were more modest, similar results were observed in vitro where natalizumab induced a mild upregulation of IL-2, IFN-γ and IL-17 expression in activated primary human CD4+ T cells propagated ex vivo from healthy donors, suggesting that natalizumab directly acts on T cells (42). The above study was focused on CD4+ T cells; so whether the same is observed for CD8+ T cells in vitro remains to be investigated. Another mechanism to explain the effect of VLA-4 blockade could be that blocking interaction between tumor and stroma cells disrupts clustering of tumor cells around the stroma, thus allowing the T cells to access the tumor cells, leading to better efficacy of CD3 redirection. Lastly, VLA-4 inhibition has been shown to directly act on AML and MM cells, rendering them more susceptible to chemotherapy and targeted therapies by preventing the expression and upregulation of key pro-survival pathways in the tumor cells themselves (34) or altering tumor cell production of anti-inflammatory cytokines.
While this study was focused on the BM microenvironment, it is possible that a similar phenomenon occurs in solid tumors. Solid tumors contain a complex dense network of extracellular matrix molecules as well as a variety of stromal cell types that may be immunosuppressive.
The results point towards the importance of targeting the BM microenvironment in conjunction with CD3 redirection therapies. Additionally, the results demonstrate that VLA-4 could potentially be used as a biomarker to predict responses toward CD3 redirection and perhaps used to guide patient selection for these immune therapies.
All publications cited herein are each hereby incorporated by reference in their entirety.
This application claims the benefit of U.S. Provisional Application 63/026,885, filed on May 19, 2020, which is incorporated by reference herein in its entirety.
| Number | Date | Country | |
|---|---|---|---|
| 63026885 | May 2020 | US |
| Number | Date | Country | |
|---|---|---|---|
| Parent | 17322973 | May 2021 | US |
| Child | 18430862 | US |
