COMPOSITIONS COMPRISING BISFLUOROALKYL-1,4-BENZODIAZEPINONE COMPOUNDS FOR TREATING ADENOID CYSTIC CARCINOMA

Abstract

The present invention provides methods of treating or suppressing Adenoid Cystic Carcinoma (ACC) or inhibiting ACC tumor growth in subjects by administering compositions comprising bisfluoroalkyl-1,4-benzodiazepinone compounds, including compounds of Formula (III) or prodrugs thereof.

Description

FIELD OF THE DISCLOSURE

The present invention provides methods of treating or suppressing Adenoid Cystic Carcinoma (ACC) or inhibiting ACC tumor growth in subjects by administering compositions comprising bisfluoroalkyl-1,4-benzodiazepinone compounds, including compounds of Formula (III) or prodrugs thereof and, optionally, a second composition comprising one or more anti-cancer agents.

BACKGROUND

Adenoid cystic carcinoma (ACC) is a rare type of cancer that mostly occurs in the salivary glands or other regions of the head and neck, but it can also be found in many other sites, including the breast, lacrimal gland, lung, brain, trachea, skin, and vulva. ACC is a heterogeneous disease characterized by a generally poor prognosis with an overall 5-year survival of less than 35%.

ACC tumors are usually slow growing. However, approximately 50% of subjects with ACC suffer late relapse and distant metastasis, most commonly in the lungs. Standard therapy includes surgical removal of the tumor followed by radiation, though many subjects develop recurrent disease even after complete surgical removal of the tumor. In some cases, therapy is limited to only radiation. Currently, there is no effective chemotherapy for metastatic or inoperable ACC, and so far, no systemic therapy including chemotherapy has received approval by the U.S. Food and Drug Administration (FDA) for the treatment of ACC. The response rate to chemotherapy and other to systemic therapies are low and progression free rates are short lived.

Many human solid tumors and hematologic malignancies show a characteristic deregulation of Notch pathway signaling. Subjects with recurrent or metastatic ACC often have mutations in the NOTCH1 gene and a worse prognosis. Gamma secretase (or γ-secretase) cleaves transmembrane Notch receptors, freeing the intracellular signaling domain (NICD), which then translocates to the nucleus, where it functions as a transcriptional activator. Notch inhibition by gamma secretase inhibitors (GSIs) such as benzodiazepinone compounds has potential for having potent antineoplastic effects.

Combination therapy, which is a cornerstone of cancer therapy, may be employed wherein the drugs being administered act in different manners or in different phases of the cell cycle, and/or where the two or more drugs have nonoverlapping toxicities or side effects, and/or where the drugs being combined each has a demonstrated efficacy in treating the particular disease state manifested by the subject.

Subjects with metastatic ACC, subjects that are refractory to standard therapies, or subjects with inoperable tumors require new strategies for treating ACC. However, no therapeutic strategy to date has been demonstrated to have efficacy in the treatment of ACC subjects.

SUMMARY OF THE DISCLOSURE

The present invention provides a method of treating or suppressing an Adenoid Cystic Carcinoma (ACC) tumor in a subject comprising the step of administering to said subject a first composition comprising one or more compounds represented by the structure of Formula (III):

or prodrugs or salts thereof;wherein:

• • R₁ is —CH₂CF₃ or —CH₂CH₂CF₃;
  • R₂ is —CH₂CF₃, —CH₂CH₂CF₃, or —CH₂CH₂CH₂CF₃;
  • R₃ is H or —CH₃;each R_a is independently F, Cl, —CN, —OCH₃, and/or —NHCH₂CH₂OCH₃; andy is zero, 1, or 2;
  • and a second composition comprising one or more anti-cancer agents, wherein said anti-cancer agent comprises an inhibitor of protein arginine methyltransferase 5 (PRMT5), an inhibitor of Bromodomain and Extra-Terminal motif (BET), a Histone deacetylase inhibitor (HDI), a fibroblast growth factor receptor (FGFR) inhibitor, Apatinib, Lenvatinib, a retinoic acid, or a combination thereof.

The present invention also provides a method of inhibiting tumor growth in a subject having an Adenoid Cystic Carcinoma (ACC) tumor comprising the step of administering to said subject a first composition comprising one or more compounds represented by the structure of Formula (III):

or prodrugs or salts thereof; wherein:R₁ is —CH₂CF₃ or —CH₂CH₂CF₃;R₂ is —CH₂CF₃, —CH₂CH₂CF₃, or —CH₂CH₂CH₂CF₃;R₃ is H or —CH₃;each R_a is independently F, Cl, —CN, —OCH₃, and/or —NHCH₂CH₂OCH₃; andy is zero, 1, or 2;and a second composition comprising one or more anti-cancer agents, wherein said anti-cancer agent comprises an inhibitor of protein arginine methyltransferase 5 (PRMT5), an inhibitor of Bromodomain and Extra-Terminal motif (BET), a Histone deacetylase inhibitor (HDI), a fibroblast growth factor receptor (FGFR) inhibitor, Apatinib, Lenvatinib, a retinoic acid, or a combination thereof.

The present invention also provides a composition comprising one or more compounds represented by the structure of Formula (I):

and/or at least one salt thereof, wherein:R₁ is —CH₂CF₃ or —CH₂CH₂CF₃;R₂ is —CH₂CF₃, —CH₂CH₂CF₃, or —CH₂CH₂CH₂CF₃;R₃ is H, —CH₃ or Rx;R₄ is H or R_y;

R_x

is: —CH₂OC(O)CH(CH₃)NH₂, —CH₂OC(O)CH(NH₂)CH(CH₃)₂, —CH₂OC(O)CH((CH(CH₃)₂)NHC (O)CH(NH₂)CH(CH₃)₂,

R_y is: —SCH₂CH(NH₂)C(O)OH, —SCH₂CH(NH₂)C(O)OCH₃, or —SCH₂CH(NH₂)C(O)OC(CH₃)₃; Ring A is phenyl or pyridinyl;each R_a is independently F, Cl, —CN, —OCH₃, C_1-3 alkyl, —CH₂OH, —CF₃, cyclopropyl, —OCH₃, —O(cyclopropyl) and/or —NHCH₂CH₂OCH₃; each Rb is independently F, Cl, —CH₃, —CH₂OH, —CF₃, cyclopropyl, and/or —OCH₃;y is zero, 1 or 2; andz is zero, 1, or 2,and a second composition comprising one or more anti-cancer agents, wherein said anti-cancer agent comprises an inhibitor of protein arginine methyltransferase 5 (PRMT5), an inhibitor of Bromodomain and Extra-Terminal motif (BET), a Histone deacetylase inhibitor (HDI), a fibroblast growth factor receptor (FGFR) inhibitor, Apatinib, Lenvatinib, a retinoic acid, or a combination thereof.

BRIEF DESCRIPTION OF THE DRAWINGS

FIG. 1. Schema and Baseline Characteristics. Subjects enrolled in the Phase 2 Clinical Trial had (1) Recurrent/metastatic (R/M) adenoid cystic carcinoma (ACC); (2) Notch-activating mutations; (3) Disease progression within prior 6 months, and (4) Eastern Cooperative Oncology Group (ECOG) score <2 (Fully active; no performance restrictions. 1. Strenuous physical activity restricted; fully ambulatory and able to carry out light work. 2. Capable of all self-care but unable to carry out any work activities). Cohort 1 was administered Compound (1) QW at a dose of 4 mg (n=45), and Cohort 2 will be administered Compound (1) QW at a dose of 6 mg (n=42). The primary endpoint is ORR per RECIST v1.1 or modified MDA Bone Response Criteria, by Investigator. Secondary endpoints include Duration of Response (DoR), Progression-Free Survival (PFS), Overall Survival (OS), Safety, and PharmacoKinetics (PKs). The study was conducted in North America, Europe and Israel. aData cutoff: Jul. 30, 2020. ^bSubjects may select more than one category. MDA, M D Anderson.

FIG. 2. Best Overall Responses by Investigator Review (n=40)^a. Subjects were administered 4 mg Compound (1) once per week. The percent change in the tumor diameter is presented for individual subjects. Subjects with Partial Response (PR) are marked in yellow; Stable disease (SD) in dark blue; Progressive Disease (PD) in gray; and Not Evaluable (NE) in black. *confirmed responses. B, bone-only disease. ^aIncludes efficacy-evaluable subjects only (#24 not included because the subject withdrew consent; #37 not included because died before disease assessment). ^bSubject #3, with bone-only disease, had an unconfirmed PR at week 32 by the investigator per modified MDA Bone Response Criteria. ^cSubject #4, with bone-only disease, had SD at week 16 by the investigator per modified MDA Bone Response Criteria. ^dSubject #2 had an unconfirmed PR at week 16. ^eThese subjects had clinical PD. ^fSubject #14, with bone-only disease, had PD at week 8 by the investigator per modified MDA Bone Response Criteria. ^gSubject #19 had radiographic PD.

FIG. 3. Time on Study and Response by Investigator Review (n=40)^a. Subjects were administered 4 mg Compound (1) once per week. The number of weeks each individual was in the study is presented. Median number of cycles administered (N=45): 4 (28-day cycle). ^aRepresents all efficacy-evaluable subjects (#24 not included because the subject withdrew consent; #37 not included because died before disease assessment). ^bResponse as assessed by investigator per RECIST v1.1. ^COnly deaths occurring within 30 days after the last dose are shown. ^dSubject #3, Subject #4 and Subject #14 had bone-only disease. ^eSubject #3 had an unconfirmed PR at week 32 by the investigator per modified MDA Bone Response Criteria. ^fSubject #29 had an unconfirmed PR at week 16. ^gSubject #15 had an unconfirmed PR at week 8. ^hSubject #2 had an unconfirmed PR at week 16.

FIGS. 4A-4D. Radiographic Scans of Subjects with Partial Response per RECISTv1.1. Radiographic scans from four subjects who had a partial response to Compound (1) treatment at baseline and at the beginning of Cycle 3 (or Week 8). The arrows indicate tumor shrinkage after Compound (1) treatment.

FIGS. 5A-5B. Compound (1) plasma concentration over time since last dose^a The concentration of Compound (1) in plasma in subjects on days 0-7 after being administered 4 mg Compound (1) on week 1 (FIG. 5A) and on week 4 (FIG. 5B). Dots represent individual subject data; lines represent geometric means. Orange lines: Phase 2 data. Green lines: Phase 1 data.

FIG. 6. Effect of CYP inhibitors and substrates on Compound (1) PK^b. Effect of concomitant administration of CYP inhibitors or substrates on the PK of Compound (1) in subjects administered 4 mg Compound (1) once per week. Box plots represent median, 25/75 percentile, and 2/98 percentile; groups with >1 subject represented are shown. 2C19; 2D6 (weak), 1A2, 3A4, 2D6

FIG. 7A. Inhibition of tumor growth with 6 mg/kg Compound (1). Mice harboring T-ALL tumors were administered Compound (1) 6 mg/kg, QDx3 per week, Days 15-17; 22-24; 29-31, Nirogacestat 150mg/kg, QD Days 15-28, or vehicle using the protocol described, and tumor volume was measured 15-60 days post-baseline.

FIG. 7B. Inhibition of tumor growth with 4 mg/kg Compound (1). Mice harboring T-ALL tumors were administered Compound (1) 4mg/kg, QD Days 18-33, Crenigacestat 6 mg/kg, QD Days 18-33, or vehicle using the protocol described, and tumor volume was measured 18-47 days post-baseline.

FIG. 8. Relapse-free survival of subjects with Adenoid Cystic Carcinoma (ACC). Relapse-free survival of ACC subjects having Notchl mutation (n=14) and of ACC subjects having wild-type Notchl (n=88) is shown.

FIG. 9A. Compound (1) Differentially Inhibits Expression of Notch Target Genes in Tumors Derived from Notch Activated ACCx11 versus Notch Wild Type PDX Models. Gene expression levels (normalized expression relative to vehicle-administered mice) by RNA-Seq of ACCx11 and ACCx5M1 PDX mice administered Compound (1) (7.50 mg/kg qdx4), demonstrating significant reduction mostly in Notch-activated ACC.

FIG. 9B. Compound (1) Differentially Inhibits Expression of Notch Target Genes in Tumors Derived from Notch Activated ACCx11 versus Notch Wild Type PDX Models. Gene expression levels (normalized expression relative to vehicle-administered mice) of 5 Notch target genes by RT-PCR of ACCx11 and ACCx5M1 PDX mice administered Compound (1) (7.50 mg/kg qdx4). Results confirm the RNA-Seq results. *p<0.05; **p<0.01; *** p<0.001.

FIG. 10A. Effect of Compound (1) monotherapy on cell viability in ACC cell lines. ACC83 and ACC112 cell lines were treated with 10 nM Compound (1) or DMSO (control) for 14 days, and cell viability relative to day 0 was determined using an Alamar Blue assay on days 7, 11 and 14. **p<0.01; ***p<0.001.

FIG. 10B. Effect of Compound (1) monotherapy on NICD1 in ACC cell lines. NICD1 immunohistochemical staining of ACC83 (left) or ACC112 (right) cells treated with either 10 nM Compound (1) or DMSO (control) for 14 days. Bar plot shows % of positive stained area in Compound (1) treated (white bars) and control (gray bars) cells. **P<0.01.

FIG. 10C. Effect of Compound (1) monotherapy on NOTCH downstream targets in ACC cell lines. Cell lysates were collected at day 14 from Compound (1)- or DMSO (control)-treated ACC83 and ACC112 cells and analyzed by western blot for the expression of NICD1, HES1, HESS and HEY1 proteins, with GAPDH used a loading control.

FIG. 11A. Effect of Compound (1) monotherapy on cell migration in ACC83 cell line. ACC83 cells were treated with either 10 nM Compound (1) or DMSO (control) for 14 days. Cells were then plated in wells containing inserts and allowed to attach for 12 h. The inserts were removed, and the gap was photographed at 0 h and at 12 h (left panel). Right panel shows relative gap width percentage calculated by comparing the gap area at 12 h relative to the gap area at 0 h. *p<0.05; **p<0.01

FIG. 11B. Effect of Compound (1) monotherapy on cell migration in ACC112 cell line. ACC112 cells were treated with either 10 nM Compound (1) or DMSO (control) for 14 days. Cells were then plated in wells containing inserts and allowed to attach for 12 h. The inserts were removed, and the gap was photographed at 0 h and at 12 h (left panel). Right panel shows relative gap width percentage calculated by comparing the gap area at 12 h relative to the gap area at 0 h. *p<0.05; **p<0.01

FIG. 11C. Effect of Compound (1) monotherapy on cell invasion in ACC83 cell line. ACC83 cells were treated with either 10 nM Compound (1) or DMSO (control) for 14 days. Cells were then placed transwell chambers and after 24 h, the membranes were stained with crystal violet. Cells that had migrated through the membrane were photographed (left panel) and counted. The average number of ACC83 cells per field that migrated through the membrane are shown in a bar plot (right panel).

FIG. 12A. Effect of Compound (1) monotherapy and Compound (1) combined therapy on tumor volume in ACCx11 model tumors. Tumor volume in PDX mice bearing an ACCx11-Notchl mutant tumor was measured over a 30-day period in mice orally administered either vehicle; Compound (1) (3.0 mg/kg; qdx4); or combined therapy of Compound (1) (3.0 mg/kg; qdx4) with each of ATRA (3 mg/kg; qdx5); Lenvatinib (100 mg/kg; qd); GSK3326595 (50 mg/kg; bid); or Apatinib (200 mg/kg; qd). qd=once a day; qwk=once a week; bid=twice a week; qdx4=4 days on/3 days off; qdx5=5 days on/2 days off.

FIG. 12B. Effect of Compound (1) monotherapy and Compound (1) combined therapy on body weight in ACCx11 model tumors. Body weight in PDX mice bearing an ACCx11-Notch1 mutant tumor was measured over a 30-day period in mice orally administered either vehicle; Compound (1) (3.0 mg/kg; qdx4); or combined therapy of Compound (1) (3.0 mg/kg; qdx4) with each of ATRA (3 mg/kg; qdx5); Lenvatinib (100 mg/kg; qd); GSK3326595 (50 mg/kg; bid); or Apatinib (200 mg/kg; qd). qd=once a day; bid=twice a week; qdx4=4 days on/3 days off; qdx5=5 days on/2 days off.

FIGS. 13A-13C. Effect of Compound (1) monotherapy and Compound (1) combined with Erdafitinib on tumor volume in ACCx11, ACCx6, and ACCx5M1 model tumors. Tumor volume in PDX mice bearing a Notchl mutant tumor (ACCx11; FIG. 13A) or Notch WT tumors (ACCx6; FIG. 13B, and ACCx5M1; FIG. 13C) was measured over a 30-day period in mice orally administered either vehicle; Compound (1) (3.0 mg/kg; qdx4); or combined therapy of Compound (1) (3.0 mg/kg; qdx4) with Erdafitinib (25 mg/kg; qd). qd=once a day; qdx4=4 days on/3 days off.

FIGS. 14A-14C. Effect of Compound (1) monotherapy and Compound (1) combined with Palboclicib on tumor volume in ACCx11, ACCx6, and ACCx5M1 model tumors. Tumor volume in PDX mice bearing a Notchl mutant tumor (ACCx11; FIG. 14A) or Notch WT tumors (ACCx6; FIG. 14B, and ACCx5M1; FIG. 14C) was measured over a 30-day period in mice orally administered either vehicle; Compound (1) (3.0 mg/kg; qdx4), PO; Palboclicib (50 or 60 mg/kg; qd). or combined therapy of Compound (1) (3.0 mg/kg; qdx4, PO) with Palboclicib (60 mg/kg; qd). qd=once a day; qdx4=4 days on/3 days off.

DETAILED DESCRIPTION

In the following detailed description, numerous specific details are set forth in order to provide a thorough understanding of the invention. However, it will be understood by those skilled in the art that the present invention may be practiced without these specific details. In other instances, well-known methods, procedures, and components have not been described in detail so as not to obscure the present invention.

In one embodiment, compositions of the present invention or for use in the methods of the present invention comprise one or more gamma secretase inhibitors, one or more Notch inhibitors, or a combination thereof. In one embodiment, the gamma secretase inhibitor comprises a bisfluoroalkyl-1,4-benzodiazepinone compound. In one embodiment, the Notch inhibitor comprises a bisfluoroalkyl-1,4-benzodiazepinone compound. In one embodiment, a second composition of the present invention or for use in the methods of the present invention comprises one or more anti-cancer agents.

Bisfluoroalkyl-1,4-benzodiazepinone Compounds

In one embodiment, the present invention provides compositions comprising one or more compounds represented by the structure of Formula (I). In one embodiment, the composition comprises compounds represented by the structure of Formula (I):

or a salt thereof, wherein:R₁ is —CH₂CF₃ or —CH₂CH₂CF₃;R₂ is —CH₂CF₃, —CH₂CH₂CF₃, or —CH₂CH₂CH₂CF₃;R₃ is H, —CH₃ or Rx;R₄ is H or R_y;

R_x

is: —CH₂OC(O)CH(CH₃)NH₂, —CH₂OC(O)CH(NH₂)CH(CH₃)₂, —CH₂OC(O)CH((CH(CH₃)₂)NHC (O)CH(NH₂)CH(CH₃)₂,

R_y is: —SCH₂CH(NH₂)C(O)OH, —SCH₂CH(NH₂)C(O)OCH₃, or —SCH₂CH(NH₂)C(O)OC(CH₃)₃; Ring A is phenyl or pyridinyl;each R_a is independently F, Cl, —CN, —OCH₃, C_1-3 alkyl, —CH₂OH, —CF₃, cyclopropyl, —OCH₃, —O(cyclopropyl) and/or —NHCH₂CH₂OCH₃;each R_b is independently F, Cl, —CH₃, —CH₂OH, —CF₃, cyclopropyl, and/or —OCH₃;y is zero, 1 or 2; andz is zero, 1, or 2.

In one embodiment, the present invention provides compositions comprising one or more compounds represented by the structure of Formula (II):

wherein R₃ is H or —CH₃; and y is zero or 1.

In one embodiment, the present invention provides compositions comprising one or more compounds represented by the structure of Formula (III). In one embodiment, the first composition comprises compounds of Formula (III):

or prodrugs or salts thereof; wherein:R₁ is —CH₂CF₃ or —CH₂CH₂CF₃;R₂ is —CH₂CF₃, —CH₂CH₂CF₃, or —CH₂CH₂CH₂CF₃;R₃ is H or —CH₃;

each R_a is independently F, Cl, —CN, —OCH₃, and/or —NHCH₂CH₂OCH₃; and

y is zero, 1, or 2.

In one embodiment, R₁ is —CH₂CF₃ or —CH₂CH₂CF₃ and R₂ is —CH₂CF₃ or —CH₂CH₂CF₃. In another embodiment, R₁ is —CH₂CH₂CF₃ and R₂ is —CH₂CH₂CF₃. In one embodiment, y is 1 or 2. In another embodiment, y is zero or 1. In one embodiment, y is zero.

In one embodiment, the compound of Formula (III) comprises: (2R,3S)—N-((3S)-1-methyl-2-oxo-5-phenyl-2,3-dihydro-1H-1,4-benzodiazepin-3-yl)-2,3-bi s(3,3,3-trifluoropropyl)succinamide (Compound (1)):

In another embodiment, the compound of Formula (III) comprises: (2R,3S)—N-((3S)-2-oxo-5-phenyl-2,3-dihydro-1H-1,4-benzodiazepin-3-yl)-2,3-bis(3,3,3-trifluoropropyl)succinamide (2):

In another embodiment, the compound of Formula (III) comprises: (2R,3S)—N-((3S)-1-methyl-2-oxo-5-phenyl-2,3-dihydro-1H-1,4-benzodiazepin-3-yl)-2-(2,2,2-trifluoroethyl)-3-(3,3,3-trifluoropropyl)succinamide (3):

In another embodiment, the compound of Formula (III) comprises: (2R,3S)—N-((3S)-1-methyl-2-oxo-5-phenyl-2,3-dihydro-1H-1,4-benzodiazepin-3-yl)-3-(2,2,2-trifluoroethyl)-2-(3,3,3-trifluoropropyl)succinamide (4):

In another embodiment, the compound of Formula (III) comprises: (2R,3S)—N-((3S)-1-(2H3)methyl-2-oxo-5-phenyl-2,3-dihydro-1H-1,4-benzodiazepin-3-yl)-2,3-bis(3,3,3-trifluoropropyl)succinamide (5):

In another embodiment, the compound of Formula (III) comprises a compound of Formula (VI):

which, in one embodiment, comprises(2R,3S)—N-((3S)-7-chloro-1-methyl-2-oxo-5-phenyl-2,3-dihydro-1H-1,4-benzodiazepin-3-yl)-2,3-bis(3,3,3-trifluoropropyl)succinamide (6), i.e. Y═H and Z═Cl; (2R,3S)—N-((3S)-8-methoxy-1-methyl-2-oxo-5-phenyl-2,3-dihydro-1H-1,4-benzodiazepin-3-yl)-2,3-bis(3,3,3-trifluoropropyl)succinamide (7), i.e. Y═OCH₃ and Z═H; (2R,3S)—N-((3S)-8-fluoro-1-methyl-2-oxo-5-phenyl-2,3-dihydro-1H-1,4-benzodiazepin-3-yl)-2,3-bis(3,3,3-trifluoropropyl)succinamide (8), i.e. Y═F and Z═H; (2R,3S)—N-((3S)-7-methoxy-1-methyl-2-oxo-5-phenyl-2,3-dihydro-1H-1,4-benzodiazepin-3-yl)-2,3-bis(3,3,3-trifluoropropyl)succinamide (9), Y═H and Z═OCH₃; (2R,3S)—N-((3S)-7-fluoro-1-methyl-2-oxo-5-phenyl-2,3-dihydro-1H-1,4-benzodiazepin-3-yl)-2,3-bis(3,3,3-trifluoropropyl)succinamide (10), i.e. Y═H and Z═F; or (2R,3S)—N-((3S)-8-chloro-1-methyl-2-oxo-5-phenyl-2,3-dihydro-1H-1,4-benzodiazepin-3-yl)-2,3-bis(3,3,3-trifluoropropyl)succinamide (11), i.e. Y═Cl and Z═H.

In another embodiment, the compound of Formula (III) comprises a compound of Formula (VII):

which in one embodiment, comprises(2R,3S)—N-((3S)-9-methoxy-2-oxo-5-phenyl-2,3-dihydro-1H-1,4-benzodiazepin-3-yl)-2,3-bis(3,3,3-trifluoropropyl)succinamide (12), i.e. X═OCH₃, Y═H and Z═H; (2R,3S)—N-((3S)-8-methoxy-2-oxo-5-phenyl-2,3-dihydro-1H-1,4-benzodiazepin-3-yl)-2,3-bis(3,3,3-trifluoropropyl)succinamide (13), i.e. X═H, Y═OCH₃ and Z═H; (2R,3S)—N-((3S)-7-methoxy-2-oxo-5-phenyl-2,3-dihydro-1H-1,4-benzodiazepin-3-yl)-2,3-bis(3,3,3-trifluoropropyl)succinamide (14), i.e. X═H, Y═H and Z═OCH₃; (2R,3S)—N-((3S)-8-cyano-9-methoxy-2-oxo-5-phenyl-2,3-dihydro-1H-1,4-benzodiazepin-3-yl)-2,3-bis(3,3,3-trifluoropropyl)succinamide (15), i.e. X═OCH₃, Y═CN and Z═H; (2R,3S)—N-((3S)-8,9-dichloro-2-oxo-5-phenyl-2,3-dihydro-1H-1,4-benzodiazepin-3-yl)-2,3-bis(3,3,3-trifluoropropyl)succinamide (16), i.e. X═Cl, Y═Cl and Z═H; (2R,3S)—N-((3S)-9-fluoro-2-oxo-5-phenyl-2,3-dihydro-1H-1,4-benzodiazepin-3-yl)-2,3-bis(3,3,3-trifluoropropyl)succinamide (17), i.e. X═F, Y═H and Z═H; or (2R,3S)—N-((3S)-9-chloro-2-oxo-5-phenyl-2,3-dihydro-1H-1,4-benzodiazepin-3-yl)-2,3-bis (3,3,3-trifluoropropyl)succinamide (18), i.e. X═Cl, Y═H and Z═H.

In another embodiment, the compound of Formula (III) comprises: (2R,3S)—N-((3S)-2-oxo-5-phenyl-2,3-dihydro-1H-1,4-benzodiazepin-3-yl)-3-(4,4,4-trifluorobutyl)-2-(3,3,3-trifluoropropyl)succinamide (19);

In another embodiment, the compound of Formula (III) comprises: (2R,3S)—N-((3S)-8-methoxy-2-oxo-5-phenyl-2,3-dihydro-1H-1,4-benzodiazepin-3-yl)-3-(4,4,4-trifluorobutyl)-2-(3,3,3-trifluoropropyl)succinamide (20)

In another embodiment, the compound of Formula (III) comprises: (2R,3S)—N-((3S)-9-((2-methoxyethyl)amino)-2-oxo-5-phenyl-2,3-dihydro-1H-1,4-benzodiazepin-3-yl)-2,3-bis(3,3,3-trifluoropropyl)succinamide (21)

In another embodiment, the present invention provides compositions comprising one or more compounds represented by the structure of Formula (I):

or a salt thereof, wherein:R₁ is —CH₂CF₃;R₂ is —CH₂CH₂CF₃, or —CH₂CH₂CH₂CF₃;

R₃ is H, —CH₃ or Rx;

R₄ is H or R_y;

R_x

is: —CH₂OC(O)CH(CH₃)NH₂, —CH₂OC(O)CH(NH₂)CH(CH₃)₂, —CH₂OC(O)CH((CH(CH₃)₂)NHC

R_y is: —SCH₂CH(NH₂)C(O)OH, —SCH₂CH(NH₂)C(O)OCH₃, or —SCH₂CH(NH₂)C(O)OC(CH₃)₃; Ring A is phenyl or pyridinyl;each R_a is independently Cl, C_1-3 alkyl, —CH₂OH, —CF₃, cyclopropyl, —OCH₃, and/or —O(cyclopropyl);each R_b is independently F, Cl, —CH₃, —CH₂OH, —CF₃, cyclopropyl, and/or —OCH₃;y is zero, 1 or 2; andz is 1 or 2.

In another embodiment, Ring A is phenyl; and R₃ is H. In another embodiment, R₂ is —CH₂CH₂CF₃; and Ring A is phenyl. In another embodiment, R₂ is —CH₂CH₂CF₃; Ring A is phenyl; R_a is C1_3 alkyl or —CH₂OH; each Rb is independently F and/or Cl; and y is 1.

In another embodiment, the present invention provides compositions comprising one or more compounds represented by the structure of Formula (IV):

In another embodiment, the present invention provides compositions comprising one or more compounds represented by the structure of Formula (V):

wherein R₃ is H or R.

In another embodiment, the present invention provides compositions comprising (2R,3S)—N-((3S)-5-(3-fluorophenyl)-9-methyl-2-oxo-2,3-dihydro-1H-1,4-benzodiazepin-3-yl)-2,3-bis(3,3,3-trifluoropropyl) succinamide (22); (2R,3S)—N-((3S)-5-(3-chlorophenyl)-9-ethyl-2-oxo-2,3-dihydro-1H-1,4-benzodiazepin-3-yl)-2,3-bis(3,3,3-trifluoropropyl)succinamide (23); (2R,3S)—N-((3S)-5-(3-chlorophenyl)-9-isopropyl-2-oxo-2,3-dihydro-1H-1,4-benzodiazepin-3-yl)-2,3-bis(3,3,3-trifluoropropyl) succinamide (24); (2R,3S)—N-(9-chloro-5-(3,4-dimethylphenyl)-2-oxo-2,3-dihydro-1H-1,4-benzodiazepin-3-yl)-3-(4,4,4-trifluorobutyl)-2-(3,3,3-trifluoropropyl)succinamide (25); (2R,3S)—N-(9-chloro-5-(3,5-dimethylphenyl)-2-oxo-2,3-dihydro-1H-1,4-benzodiazepin-3-yl)-3-(4,4,4-trifluorobutyl)-2-(3,3,3-trifluoropropyl)succinamide (26); (2R,3S)—N-((3S)-9-ethyl-5-(3-methylphenyl)-2-oxo-2,3-dihydro-1H-1,4-benzodiazepin-3-yl)-2,3-bis(3,3,3-trifluoropropyl) succinamide (27); (2R,3S)—N-((3S)-5-(3-chlorophenyl)-9-methyl-2-oxo-2,3-dihydro-1H-1,4-benzodiazepin-3-yl)-2,3-bis(3,3,3-trifluoropropyl)succinamide (28); (2R,3S)—N-((3S)-5-(3-chlorophenyl)-9-methyl-2-oxo-2,3-dihydro-1H-1,4-benzodiazepin-3-yl)-3-(4,4,4-trifluorobutyl)-2-(3,3,3-trifluoropropyl)succinamide (29); (2R,3S)—N-((3S)-5-(3-methylphenyl)-2-oxo-9-(trifluoromethyl)-2,3-dihydro-1H-1,4-benzodiazepin-3-yl)-2,3-bis(3,3,3-trifluoropropyl) succinamide (30); (2R,3S)—N-((3S)-9-chloro-5-(3,5-dimethylphenyl)-2-oxo-2,3-dihydro-1H-1,4-benzodiazepin-3-yl)-2,3-bis(3,3,3-trifluoropropyl)succinamide (31); (2R,3S)—N-((3S)-5-(3-methylphenyl)-2-oxo-9-(trifluoromethyl)-2,3-dihydro-1H-1,4-benzodiazepin-3-yl)-3-(4,4,4-trifluorobutyl)-2-(3,3,3-trifluoropropyl)succinamide (32); (2R,3S)—N-((3S)-9-i sopropyl-5-(3-methylphenyl)-2-oxo-2,3-dihydro-1H-1,4-benzodiazepin-3-yl)-2,3-bis(3,3,3-trifluoropropyl)succinamide (33); (2R,3S)—N-((3S)-9-(cyclopropyloxy)-5-(3- methylphenyl)-2-oxo-2,3-dihydro-1H-1,4-benzodiazepin-3-yl)-3-(4,4,4-trifluorobutyl)-2-(3,3,3-trifluoropropyl)succinamide (34); (2R,3S)—N-((3S)-9-(cyclopropyloxy)-5-(3-methylphenyl)-2-oxo-2,3-dihydro -1H-1,4-benzodiazepin-3-yl)-2,3-bis(3,3,3-trifluoropropyl)succinamide (35); (2R,3S)—N-((3S)-9-chloro -5-(3-methylphenyl)-2-oxo -2,3-dihydro-1H-1,4-benzodiazepin-3-yl)-3-(4,4,4-trifluorobutyl)-2-(3,3,3-trifluoropropyl)succinamide (36); (2R,3S)—N-((3S)-9-methyl-2-oxo -5-(3-(trifluoromethyl)phenyl)-2,3-dihydro-1H-1,4-benzodiazepin-3-yl)-3-(4,4,4-trifluorobutyl)-2-(3,3,3-trifluoropropyl)succinamide (37); (2R,3S)—N-((3S)-9-methyl-2-oxo-5-(3-(trifluoromethyl) phenyl)-2,3-dihydro -1H-1,4-benzodiazepin-3-yl)-2,3-bis(3,3,3-trifluoropropyl)succinamide (38); (2R,3S)—N-((3S)-9-chloro -5-(2-methylphenyl)-2-oxo -2,3-dihydro-1H-1,4-benzodiazepin-3-yl)-2,3-bis(3,3,3-trifluoropropyl)succinamide (39); (2R,3S)—N-((3S)-5-(4-fluorophenyl)-9-methyl-2-oxo -2,3-dihydro-1H-1,4-benzodiazepin-3-yl)-2,3-bis(3,3,3-trifluoropropyl)succinamide (40); (2R,3S)—N-((3S)-9-chloro-5-(3-cyclopropylphenyl)-2-oxo -2,3-dihydro-1H-1,4-benzodiazepin-3-yl)-2,3-bis(3,3,3-trifluoropropyl)succinamide (41); (2R,3S)—N-((3S)-5-(3-chlorophenyl)-9-methoxy -2-oxo -2,3-dihydro-1H-1,4-benzodiazepin-3-yl)-2,3-bis(3,3,3-trifluoropropyl)succinamide (42); (2R,3S)—N-((3S)-5-(4-chlorophenyl)-9-methoxy -2-oxo -2,3-dihydro -1H-1,4-benzodiazepin-3-yl)-2,3-bis(3,3,3-trifluoropropyl)succinamide (43); (2R,3S)—N-((3S)-9-chloro -5-(3-methylphenyl)-2-oxo -2,3-dihydro-1H-1,4-benzodiazepin-3-yl)-2,3-bis(3,3,3-trifluoropropyl)succinamide (44); (2R,3S)—N-((3S)-5-(3-methylphenyl)-9-methoxy -2-oxo -2,3-dihydro -1H-1,4-benzodiazepin-3-yl)-2,3-bis(3,3,3-trifluoropropyl)succinamide (45); (2R,3S)—N-((3S)-5-(4-(hydroxymethyl)phenyl)-2-oxo -2,3-dihydro-1H-1,4-benzodiazepin-3-yl)-2,3-bis(3,3,3-trifluoropropyl)succinamide (46); (2R,3S)—N-((3S)-5-(2-methylphenyl)-2-oxo -2,3-dihydro-1H-1,4-benzodiazepin-3-yl)-2,3-bis(3,3,3-trifluoropropyl)succinamide (47); (2R,3S)—N-((3S)-5-(3-methylphenyl)-2-oxo -2,3-dihydro -1H-1,4-benzodiazepin-3-yl)-2,3-bis(3,3,3-trifluoropropyl)succinamide (48); (2R,3S)—N-((3S)-9-methoxy -2-oxo-5-(5-(trifluoromethyl)-2-pyridinyl)-2,3-dihydro -1H-1,4-benzodiazepin-3-yl)-2,3-bis(3,3,3-trifluoropropyl)succinamide (49); (2R,3S)—N-((3S)-5-(5-chloro -2-pyridinyl)-9-methoxy -2-oxo -2,3-dihydro-1H-1,4-benzodiazepin-3-yl)-2,3-bis(3,3,3-trifluoropropyl)succinamide (50); (2R,3S)—N-((3S)-5-(4-methoxyphenyl)-2-oxo -2,3-dihydro -1H-1,4-benzodiazepin-3-yl)-2,3-bis(3,3,3-trifluoropropyl)succinamide (51); (2R,3S)—N-((3S)-5-(4-methylphenyl)-2-oxo -2,3-dihydro -1H-1,4-benzodiazepin-3-yl)-2,3-bis(3,3,3-trifluoropropyl)succinamide (52); (2R,3S)—N-((3S)-5-(3-fluorophenyl)-9-(hydroxymethyl)-2-oxo -2,3-dihydro-1H-1,4-benzodiazepin-3-yl)-2,3-bis(3,3,3-trifluoropropyl)succinamide (53); ((3S)-3-(((2R,3S)-3-carbamoyl-6,6,6-trifluoro -2-(3,3,3-trifluoropropyl)hexanoyl)amino)-5-(3-fluorophenyl)-9-methyl-2-oxo -2,3-dihydro -1H-1,4-benzodiazepin-1-yl)methyl L-valinate (54); ((3S)-3-(((2R,3S)-3-carbamoyl-6,6,6-trifluoro -2-(3,3,3-trifluoropropyl)hexanoyl)amino)-5-(3-fluorophenyl)-9-methyl-2-oxo -2,3-dihydro -1H-1,4-benzodiazepin-1-yl)methyl L-alaninate (55); S-(((2S ,3 R)-6,6,6-trifluoro -3-(((3S)-5-(3-fluorophenyl)- 9-methyl-2-oxo-2,3-dihydro-1H-1,4-benzodiazepin-3-yl)carbamoyl)-2-(3,3,3-trifluoropropyl)hexanoyl)amino)-L-cysteine (56); tert-butyl S -(((2S ,3R)-6,6,6-trifluoro-3-(((3S)-5-(3-fluorophenyl)-9-methyl-2-oxo-2,3-dihydro-1H-1,4-benzodiazepin-3-yl)carbamoyl)-2-(3,3,3-trifluoropropyl)hexanoyl)amino)-L-cysteinate (57); methyl S -(((2S ,3R)-6,6,6-trifluoro-3-(((3S)-5-(3-fluorophenyl)-9-methyl-2-oxo-2,3-dihydro-1H-1,4-benzodiazepin-3-yl)carbamoyl)-2-(3,3,3-trifluoropropyl)hexanoyl)amino)-L-cysteinate (58); ((3S)-3-(((2R,3S)-3-carbamoyl-6,6,6-trifluoro-2-(3,3,3-trifluoropropyl)hexanoyl)amino)-5-(3-fluorophenyl)-9-methyl-2-oxo-2,3-dihydro-1H-1,4-benzodiazepin-1-yl)methyl (4-(pho sphonooxy)phenyl) acetate (59); and ((3S)-3-(((2R,3S)-3-carbamoyl-6,6,6-trifluoro-2-(3,3,3-trifluoropropyl)hexanoyl)amino)-5-(3-fluorophenyl)-9-methyl-2-oxo-2,3-dihydro-1H-1,4-benzodiazepin-1-yl)methyl L-valyl-L-valinate (60); and salts thereof.

In another embodiment, the present invention provides compositions comprising one or more compounds represented by the structure of Formula (I):

or a salt thereof, wherein:R₁ is —CH₂CF₃ or —CH₂CH₂CF₃;R₂ is —CH₂CF₃, —CH₂CH₂CF₃, or —CH₂CH₂CH₂CF₃;R₃ is H, —CH₃ or Rx;R₄ is H or R_y;

R_x

is: —CH₂OC(O)CH(CH₃)NH₂, —CH₂OC(O)CH(NH₂)CH(CH₃)₂, —CH₂OC(O)CH((CH(CH₃)₂)NHC

R_y is: —SCH₂CH(NH₂)C(O)OH, —SCH₂CH(NH₂)C(O)OCH₃, or —SCH₂CH(NH₂)C(O)OC(CH₃)₃; Ring A is phenyl or pyridinyl;

each R_a is independently F, Cl, —CN, —OCH₃, C1-3 alkyl, —CH₂OH, —CF₃, cyclopropyl, —OCH₃, —O(cyclopropyl) and/or —NHCH₂CH₂OCH₃;each Rb is independently F, Cl, —CH₃, —CH₂OH, —CF₃, cyclopropyl, and/or —OCH₃;y is zero, 1 or 2; andz is zero, 1, or 2provided that if Ring A is phenyl, z is zero, and y is 1 or 2 then at least one R_a is C_1-3 alkyl, —CH₂OH, —CF₃, cyclopropyl, or —O(cyclopropyl);provided that if R₃ is R then R₄ is H; andprovided that if R₄ is R_y then R₃ is H or —CH₃.

In another embodiment, the structure as described hereinabove comprises one or more of the following provisos: provided that if Ring A is phenyl, z is zero, and y is 1 or 2 then at least one R_a is C_1-3 alkyl, —CH₂OH, —CF₃, cyclopropyl, or —O(cyclopropyl); provided that if R₃ is R_x then R₄ is H; and provided that if R₄ is R_y then R₃ is H or —CH₃.

In another embodiment, the present invention provides compositions comprising one or more compounds represented by the following structure:

In another embodiment, the compounds as described herein comprise prodrugs of one or more of the compounds.

U.S. Pat. No. 9,273,014, which is incorporated by reference herein in its entirety, discloses various compounds of Formula (I):

or a salt thereof, wherein:R₁ is —CH₂CH₂CF₃;R₂ is —CH₂CH₂CF₃ or —CH₂CH₂CH₂CF₃;R₃ is H, —CH₃, or R_x;R₄ is H or R_y;

R_x;

is: —CH₂OC(O)CH(CH₃)NH₂, —CH₂OC(O)CH(NH₂)CH(CH₃)₂, —CH₂OC(O)CH((CH(CH₃)₂)NHC

R_y is: —SCH₂CH(NH₂)C(O)OH, —SCH₂CH(NH₂)C(O)OCH₃, or —SCH₂CH(NH₂)C(O)OC(CH₃)₃; Ring A is phenyl or pyridinyl;each R_a is independently Cl, C1-3 alkyl, —CH₂OH, —CF₃, cyclopropyl, —OCH₃, and/or —O(cyclopropyl);each R_b is independently F, Cl, —CH₃, —CH₂OH, —CF₃, cyclopropyl, and/or —OCH₃;y is zero, 1, or 2; andz is 1 or 2.

U.S. Pat. No. 9,273,014 also discloses the compound of Formula (22):

which, in one embodiment, has the chemical name (2R,3S)—N-((3S)-5-(3-fluorophenyl)-9-methyl-2-oxo-2,3-dihydro-1H-1,4-benzodiazepin-3-yl)-2,3-bis(3,3,3-trifluoropropyl)succinamide. U.S. Pat. No. 9,273,014 also discloses a process for synthesizing the compounds as well as other compounds of Formula (I), which are to be considered as part of the present invention.

U.S. Pat. No. 8,629,136, which is incorporated by reference herein in its entirety, discloses compounds of Formula (III):

or a salt thereof, wherein:R₃ is H or —CH₃; andeach R_a is independently F, Cl, —CN, —OCH₃ and/or —NHCH₂CH₂OCH₃.

U.S. Pat. No. 8,629,136 also discloses the compound of Formula (1):

which, in one embodiment, has the chemical name (2R,3S)—N-((3S)-1-methyl-2-oxo-5-phenyl-2,3-dihydro-1H-1,4-benzodiazepin-3-yl)-2,3-bis(3,3,3-trifluoropropyl)succinamide. In one embodiment, the compounds are Notch inhibitors. U.S. Pat. No. 8,629,136 discloses a process for synthesizing the compounds as well as other compounds of Formula (I), which are to be considered as part of the present invention.

The present invention may be embodied in other specific forms without departing from the spirit or essential attributes thereof. This invention encompasses all combinations of the aspects and/or embodiments of the invention noted herein. It is understood that any and all embodiments of the present invention may be taken in conjunction with any other embodiment or embodiments to describe addition more embodiments. It is also to be understood that each individual element of the embodiments is meant to be combined with any and all other elements from any embodiment to describe an additional embodiment.

Combined Treatments/Therapies

In one embodiment, the present invention provides combination therapies comprising a first composition comprising one or more compounds represented by the structure of Formula (I) as described herein and a second composition comprising one or more anti-cancer agents.

In another embodiment, the present invention provides a combination therapy comprising a first composition comprising one or more compounds represented by the structure of Formula (I) as described herein and a second composition comprising one or more chemotherapeutic agents. In some embodiments, the term “chemotherapeutic agent” may encompass any chemical agent that has therapeutic utility in the treatment of proliferative diseases, such as cancer.

In one embodiment, the present invention provides a combination therapy comprising a first composition comprising one or more compounds represented by the structure of Formula (III):

or prodrugs or salts thereof; wherein:R₁ is —CH₂CF₃ or —CH₂CH₂CF₃;R₂ is —CH₂CF₃, —CH₂CH₂CF₃, or —CH₂CH₂CH₂CF₃;R₃ is H or —CH₃;each R_a is independently F, Cl, —CN, —OCH₃, and/or —NHCH₂CH₂OCH₃; andy is zero, 1, or 2and a second composition comprising one or more anti-cancer agents.

In one embodiment, the present invention provides a combination therapy comprising a first 10 composition comprising one or more compounds represented by the structure of Formula (III):

or prodrugs or salts thereof; wherein:

• • R₁ is —CH₂CF₃ or —CH₂CH₂CF₃;
  • R₂ is —CH₂CF₃, —CH₂CH₂CF₃, or —CH₂CH₂CH₂CF₃;
  • R₃ is H or —CH₃;
  • each R_a is independently F, Cl, —CN, —OCH₃, and/or —NHCH₂CH₂OCH₃; and
  • y is zero, 1, or 2and a second composition comprising one or more chemotherapeutic agents.

In some embodiments, a combination therapy for use in the methods of treating or suppressing an ACC tumor comprise a first composition comprising one or more compounds represented by the structure of Formula (III):

or prodrugs or salts thereof; wherein:

• • R₁ is —CH₂CF₃ or —CH₂CH₂CF₃;
  • R₂ is —CH₂CF₃, —CH₂CH₂CF₃, or —CH₂CH₂CH₂CF₃;
  • R₃ is H or —CH₃;
  • each R_a is independently F, Cl, —CN, —OCH₃, and/or —NHCH₂CH₂OCH₃; and
  • y is zero, 1, or 2;and a second composition comprising one or more anti-cancer agents.

In some embodiments, a combination therapy for use in the methods of inhibiting tumor growth in a subject having an ACC tumor comprise a first composition comprising one or more compounds represented by the structure of Formula (III):

or prodrugs or salts thereof; wherein:R₁ is —CH₂CF₃ or —CH₂CH₂CF₃;R₂ is —CH₂CF₃, —CH₂CH₂CF₃, or —CH₂CH₂CH₂CF₃;R₃ is H or —CH₃;each R_a is independently F, Cl, —CN, —OCH₃, and/or —NHCH₂CH₂OCH₃; andy is zero, 1, or 2;and a second composition comprising one or more anti-cancer agents.

In one embodiment, a combination therapy of the present invention or for use in the methods of the present invention comprises one or more anti-cancer agents with one or more bisfluoroalkyl-1,4-benzodiazepinone compounds as described hereinabove.

In another embodiment, any of the compositions or combinations as described herein for any of the uses as described herein may be used in combination with other anti-cancer treatments as described herein or as described in PCT Publication No. WO 2019/222231, which is incorporated by reference herein in its entirety, or as known in the art.

In some embodiments, the present invention provides a first composition comprising one or more compounds represented by the structure of Formula (I) as described herein and a second composition comprising one or more anti-cancer agents.

In some embodiments, the present invention provides a first composition comprising one or more compounds represented by the structure of Formula (I) as described herein and a second composition comprising one or more HDAC inhibitors. In one embodiment, the HDAC inhibitor comprises Panobinostat. In another embodiment, the HDAC inhibitor comprises Romidepsin. In another embodiment, the HDAC inhibitor comprises Vorinostat. In another embodiment, the HDAC inhibitor comprises Belinostat.

In some embodiments, the present invention provides a first composition comprising one or more compounds represented by the structure of Formula (I) as described herein and a second composition comprising one or more Bcl2 inhibitors. In one embodiment, the BCL2 inhibitor comprises Venetoclax. In another embodiment, the BCL2 inhibitor comprises Lisaftoclax (APG-2575). In some embodiments, the Bc1-2 inhibitor comprises APG-2575. In other embodiments, the Bcl-2 inhibitor comprises APG-1252, which in some embodiments is Pelcitoclax; APG 1252 12A; APG-1252; or Palcitoclax. In other embodiments, the Bc1-2 inhibitor comprises obatoclax. In other embodiments, the Bcl-2 inhibitor comprises AT-101. In other embodiments, the Bcl-2 inhibitor comprises ABT-263 (navitoclax). In other embodiments, the Bcl-2 inhibitor comprises AZD0466. In other embodiments, the Bcl-2 inhibitor comprises 555746. In other embodiments, the Bcl-2 inhibitor comprises AMG-176. In other embodiments, the Bcl-2 inhibitor comprises AZD5991. In other embodiments, the Bc1-2 inhibitor comprises S64315/MIK665. In other embodiments, the Bc1-2 inhibitor comprises any combination of the inhibitors listed herein.

In other embodiments, the Bcl-2 inhibitor comprises ABT-737, sabutoclax, A-1210477; S63845; WEHI-539; A-1155463; BM-1197; 544563; APG-1252; S55746; 5655487, or a combination thereof.

In some embodiments, the present invention provides a first composition comprising one or more compounds represented by the structure of Formula (I) as described herein and a second composition comprising one or more CDK 4/6 inhibitors. In one embodiment, the CDK 4/6 inhibitor comprises Palbociclib. In another embodiment, the CDK 4/6 inhibitor comprises ribociclib. In another embodiment, the CDK 4/6 inhibitor comprises abemaciclib.

In some embodiments, the present invention provides a first composition comprising one or more compounds represented by the structure of Formula (I) as described herein and a second composition comprising one or more TKIs. In one embodiment, the TM comprises pazopanib. In another embodiment, the TM comprises sorafenib. In another embodiment, the TM comprises lenvatinib. In another embodiment, the TM comprises regorafenib. In another embodiment, the TM comprises lenvatinib. In another embodiment, the TM comprises rivoceranib (apatinib).

In some embodiments, the present invention provides a first composition comprising one or more compounds represented by the structure of Formula (I) as described herein and a second composition comprising one or more fibroblast growth factor receptor (FGFR) inhibitors. In one embodiment, the FGFR inhibitor comprises erdafitinib. In another embodiment, the FGFR inhibitor comprises pemigatinib. In another embodiment, the FGFR inhibitor comprises infigratinib.

In some embodiments, the anti-cancer agent comprises one or more inhibitors of protein arginine methyltransferase 5 (PRMT5). In some embodiments, the PRMT5 comprises GSK3326595 (EPZ015938). In some embodiments, the PRMT5 comprises GSK3235025 (EPZ015666). In some embodiments, the PRMT5 comprises GSK3368715 (EPZ019997). In some embodiments, the PRMT5 comprises JNJ-64619178.

In some embodiments, the anti-cancer agent comprises one or more inhibitors of Bromodomain and Extra-Terminal motif (BET). In some embodiments, the BET inhibitor comprises I-BET 151 (GSK1210151A), I-BET 762 (GSK525762), OTX-015, TEN-010, CPI-203, CPI-0610, olinone, RVX-208, ABBV-744, LY294002, AZD5153, MT-1, or a combination thereof.

In some embodiments, the anti-cancer agent comprises one or more Histone deacetylase inhibitors (HDIs). In some embodiments, the HDI comprises hydroxamic acids (or hydroxamate), which, in one embodiment, comprises trichostatin A. In some embodiments, the HDI comprises cyclic tetrapeptides, which, in one embodiment, comprises trapoxin B. In some embodiments, the HDI comprises depsipeptide. In some embodiments, the HDI comprises benzamide. In some embodiments, the HDI comprises an electrophilic ketone. In some embodiments, the HDI comprises aliphatic acids, which, in one embodiment, comprises phenylbutyrate or valproic acid. In some embodiments, the HDI comprises hydroxamic acids, which, in some embodiments, comprise vorinostat (SAHA), belinostat (PXD101), LAQ824, panobinostat (LBH589), or a combination thereof. In some embodiments, the HDI comprises a benzamide. In some embodiments, the HDI comprises entinostat (MS-275), tacedinaline (CI994), and mocetinostat (MGCD0103), or a combination thereof. In some embodiments, the HDI comprises nicotinamide. In some embodiments, the HDI comprises Nicotinamide adenine dinucleotide (NAD) derivatives, which, in some embodiments, comprise dihydrocoumarin, naphthopyranone, 2-hydroxynaphthaldehydes, or a combination thereof.

In some embodiments, the anti-cancer agent comprises one or more Tyrosine Kinase Inhibitors (TKIs). In some embodiments, the anti-cancer agent comprises Apatinib (Rivoceranib; YN968D1). In some embodiments, the anti-cancer agent comprises Lapatinib. In some embodiments, the anti-cancer agent comprises Lenvatinib. In some embodiments, the TM comprises Lenvatinib. In some embodiments, the TM comprises Apatinib. In some embodiments, the TM comprises Lapatinib.

In some embodiments, the anti-cancer agent comprises retinoic acid. In some embodiments, the retinoic acid comprises all-trans retinoic acid (ATRA) (tretin-X, tretinoin). In some embodiments, the retinoic acid comprises alitretinoin. In some embodiments, the retinoic acid comprises isotretinoin.

In some embodiments, the second composition comprises at least one anti-cancer agent. In some embodiments, the second composition comprises one anti-cancer agent. In some embodiments, the second composition comprises two anti-cancer agents. In some embodiments, the second composition comprises 3 anti-cancer agents. In some embodiments, the second composition comprises 4 anti-cancer agents. In some embodiments, the second composition comprises 5 anti-cancer agents. In some embodiments, the second composition comprises 6 anti-cancer agents.

In another embodiment, the present invention provides a combination therapy comprising one or more compounds represented by the structure of Formula (I) as described herein and a composition comprising one or more inhibitors of PRMT5. In one embodiment, PRMT5 comprises GSK3326595 (EPZ015938), GSK3235025 (EPZ015666), GSK3368715 (EPZ019997), and JNJ-64619178. In another embodiment, the present invention provides a combination therapy comprising one or more compounds represented by the structure of Formula (I) as described herein an GSK3326595 (EPZ015938), GSK3235025 (EPZ015666), GSK3368715 (EPZ019997), JNJ-64619178, or a combination thereof.

In another embodiment, the present invention provides a combination therapy comprising a composition comprising one or more compounds represented by the structure of Formula (I) as described herein and a composition comprising one or more inhibitors of Bromodomain and BET. In one embodiment, the BET inhibitor comprises I-BET 151 (GSK1210151A), I-BET 762 (GSK525762), OTX-015, TEN-010, CPI-203, CPI-0610, olinone, RVX-208, ABBV-744, LY294002, AZD5153, and MT-1. In another embodiment, the present invention provides a combination therapy comprising one or more compounds represented by the structure of Formula (I) as described herein and I-BET 151 (GSK1210151A), I-BET 762 (GSK525762), OTX-015, TEN- 010, CPI-203, CPI-0610, olinone, RVX-208, ABBV-744, LY294002, AZD5153, MT-1, or a combination thereof.

In another embodiment, the present invention provides a combination therapy comprising one or more compounds represented by the structure of Formula (I) as described herein and one or more Histone deacetylase inhibitors (HDIs). In one embodiment, the HDI comprises hydroxamic acids (or hydroxamate), trichostatin A, cyclic tetrapeptides, trapoxin B, depsipeptide, benzamide, an electrophilic ketone, aliphatic acids, phenylbutyrate, valproic acid, hydroxamic acids, vorinostat (SAHA), belinostat (PXD101), LAQ824, panobinostat (LBH589), benzamide, entinostat (MS-275), tacedinaline (CI994), mocetinostat (MGCD0103), nicotinamide, Nicotinamide adenine dinucleotide (NAD) derivatives, dihydrocoumarin, naphthopyranone, and 2-hydroxynaphthaldehyde.

In another embodiment, the present invention provides a combination therapy comprising one or more compounds represented by the structure of Formula (I) as described herein and one or more Tyrosine Kinase Inhibitors (TKIs). In one embodiment, the TM comprises Apatinib (Rivoceranib; YN968D1), Lapatinib, and Lenvatinib. In another embodiment, the present invention provides a combination therapy comprising one or more compounds represented by the structure of Formula (III) as described herein and Apatinib (Rivoceranib; YN968D1), Lapatinib, Lenvatinib, or a combination thereof.

In another embodiment, the present invention provides a combination therapy comprising one or more compounds represented by the structure of Formula (I) as described herein and one or more retinoic acids. In one embodiment, the retinoic acid comprises all-trans retinoic acid (ATRA) (tretin-X, tretinoin), alitretinoin, and isotretinoin. In another embodiment, the present invention provides a combination therapy comprising one or more compounds represented by the structure of Formula (III) as described herein and all-trans retinoic acid (ATRA) (tretin-X, tretinoin), alitretinoin, isotretinoin, or a combination thereof.

In another embodiment, the present invention provides a combination therapy comprising one or more compounds represented by the structure of Formula (I) as described herein and osimertinib (mereletinib; Tagrisso).

In another embodiment, the present invention provides a combination therapy comprising one or more compounds represented by the structure of Formula (I) as described herein and one or more FGFR inhibitors. In one embodiment, the FGFR inhibitor comprises Rogaratinib. In another embodiment, the FGFR inhibitor comprises JNJ-42756493 (Erdafitinib). In another embodiment, the FGFR inhibitor comprises AZD4547, Ly2874455, CH_5183284, NVP-BGJ398, INCB054828, PRN1371, TAS-120, BLU-554, H3B-6527, FGF401, or a combination thereof. In another embodiment, the FGFR inhibitor comprises erdafitinib, pemigatinib, infigratinib, or a combination thereof.

In another embodiment, the present invention provides a combination therapy comprising one or more compounds represented by the structure of Formula (I) as described herein and one or more chromatin modulators.

In another embodiment, the present invention provides a combination therapy comprising one or more compounds represented by the structure of Formula (I) as described herein and a compound or polypeptide that indirectly targets Myb/Myc. In another embodiment, the present invention provides a combination therapy comprising one or more compounds represented by the structure of Formula (I) as described herein and a compound or polypeptide that indirectly targets Myb. In another embodiment, the present invention provides a combination therapy comprising one or more compounds represented by the structure of Formula (I) as described herein and a compound or polypeptide that indirectly targets Myc.

In some embodiments, the combination therapy further comprises an agent for treating Adenoid Cystic Carcinoma (ACC). In one embodiment, the agent for treating ACC comprises Axitinib, Bortezomib (Velcade), Bortezomib +doxorubicin, Cetuximab, Cetuximab+Intensity modulated radiation therapy (IMRT), Cetuximab+RT+cisplatin, Cetuximab+cisplatin+5-FU, Chidamide (CS055/HBI-8000), Cetuximab & Carbon Ion, Cisplatin, cisplatin & 5-FU, Cisplatin & Doxorubicin & Bleomycin, Cisplatin & Doxorubicin & Cyclophosphamide, Dasatinib, Dovitinib, Epirubicin, Gefitinib, Gemcitabine, Gemcitabine & Cisplatin, Imatinib, Imatinib+cisplatin, Lapatinib, Mitoxanthrone, MK 2206, Nelfinavir, Paclitaxel, Paclitaxel & Carboplatin, Panitumumab & Radiotherapy, PF-00562271, PF-00299804 & Figitumumab PX-478, PX-866, Regorafenib, Sonepcizumab, Sorafenib, Sunitinib, Vinorelbine, Vinorelbine & Cisplatin, Vorinostat, XL147 & Erlotinib, XL647, or combinations thereof.

In one embodiment, a method is provided for treating cancer comprising administering to a mammal in need thereof a first composition comprising one or more compounds represented by the structure of Formula (I) as described herein and administering a second composition comprising one or more anti-cancer agents.

In one embodiment, the phrase “anti-cancer agent” comprises: alkylating agents (including mustard, nitrogen mustards, methanesulphonate, busulphan, alkyl sulfonates, nitrosoureas, ethylenimine derivatives, and triazenes or combinations thereof); anti-angiogenics (including matrix metalloproteinase inhibitors); antimetabolites (including adenosine deaminase inhibitors, folic acid antagonists, purine analogues, and pyrimidine analogues); antibiotics or antibodies (including monoclonal antibodies, CTLA-4 antibodies, anthracyclines); aromatase inhibitors; cell-cycle response modifiers; enzymes; farnesyl-protein transferase inhibitors; hormonal and antihormonal agents and steroids (including synthetic analogs, glucocorticoids, estrogens/anti-estrogens [e.g., SERMs], androgens/anti-androgens, progestins, progesterone receptor agonists, and luteinizing hormone-releasing [LHRH] agonists and antagonists); insulin-like growth factor (IGF)/insulin-like growth factor receptor (IGFR) system modulators (including IGFR₁ inhibitors); integrin-signaling inhibitors; kinase inhibitors (including multi-kinase inhibitors and/or inhibitors of Src kinase or Src/ab 1, cyclin dependent kinase [CDK] inhibitors, panHer, Her-1 and Her-2 antibodies, VEGF inhibitors, including anti-VEGF antibodies, EGFR inhibitors, PARP (poly ADP-ribose polymerase) inhibitors, mitogen-activated protein [MAP] inhibitors, MET inhibitors, Aurora kinase inhibitors, PDGF inhibitors, and other tyrosine kinase inhibitors or serine/threonine kinase inhibitors; microtubule-disruptor agents, such as ecteinascidins or their analogs and derivatives; microtubule-stabilizing agents such as taxanes, Platinum-based antineoplastic drugs (platins) such as cisplatin, carboplatin, oxaliplatin, nedaplatin, triplatin tetranitrate, phenanthriplatin, picoplatin and satraplatin and the naturally-occurring epothilones and their synthetic and semi-synthetic analogs; microtubule-binding, destabilizing agents (including vinca alkaloids); topoisomerase inhibitors; prenyl-protein transferase inhibitors; platinum coordination complexes; signal transduction inhibitors; Histone deacetylase inhibitors (HDIs), inhibitors of Bromodomain and BET, inhibitors of PRMT5, retinoic acids and other agents used as anti-cancer and cytotoxic agents such as biological response modifiers, growth factors, and immune modulators.

Accordingly, the combination therapies of the present invention may be administered together with other anti-cancer treatments useful in the treatment of cancer or other proliferative diseases. The invention herein further comprises use of the first and second compositions of the present invention in preparing medicaments for the treatment of cancer.

The combination therapies of the present invention can be formulated or co-administered with other therapeutic agents that are selected for their particular usefulness in addressing side effects associated with the aforementioned conditions. For example, compounds of the invention may be formulated with agents to prevent nausea, hypersensitivity and gastric irritation, such as antiemetics, and H₁ and H2 antihistaminics.

In one embodiment, pharmaceutical compositions are provided comprising a compound of Formula (I) or prodrug thereof; one or more additional agents selected from a kinase inhibitory agent (small molecule, polypeptide, and antibody), an immunosuppressant, an anti-cancer agent, an anti-viral agent, anti-inflammatory agent, antifungal agent, antibiotic, or an anti-vascular hyperproliferation compound; and any pharmaceutically acceptable carrier, adjuvant or vehicle.

The above other therapeutic agents, when employed in combination with the compounds of the present invention, may be used, for example, in those amounts indicated in the Physicians' Desk Reference (PDR) or as otherwise determined by one of ordinary skill in the art.

Pharmaceutical Compositions

Formulations

Also embraced within this invention is a class of pharmaceutical compositions comprising the compound of Formula (I) or Formula (III), and optionally a second composition comprising one or more anti-cancer agents, and one or more non-toxic, pharmaceutically acceptable carriers and/or diluents and/or adjuvants (collectively referred to herein as “carrier” materials) and, if desired, other active ingredients. In some embodiments, a pharmaceutical composition comprises a first composition, as described herein. In some embodiments, a pharmaceutical composition comprises a second composition, as described herein.

The compounds of Formula (I) or Formula (III) may be administered by any suitable route, preferably in the form of a pharmaceutical composition adapted to such a route, and in a dose effective for the treatment intended. The compounds and pharmaceutical compositions of the present invention may, for example, be administered in dosage unit formulations containing conventional pharmaceutically acceptable carriers, adjuvants, and vehicles. For example, the pharmaceutical carrier may contain a mixture of mannitol or lactose and microcrystalline cellulose. The mixture may contain additional components such as a lubricating agent, e.g., magnesium stearate and a disintegrating agent such as crospovidone. The carrier mixture may be filled into a gelatin capsule or compressed as a tablet. The pharmaceutical composition may be administered as an oral dosage form or an infusion, for example.

For oral administration, the pharmaceutical composition may be in the form of, for example, a tablet, capsule, liquid capsule, suspension, or liquid. The pharmaceutical composition is preferably made in the form of a dosage unit containing a particular amount of the active ingredient. For example, the pharmaceutical composition may be provided as a tablet or capsule comprising an amount of active ingredient in the range of from about 1 to 2000 mg, preferably from about 1 to 500 mg, and more preferably from about 5 to 150 mg. A suitable daily dose for a human or other mammal may vary widely depending on the condition of the subject and other factors, but can be determined using routine methods.

Any pharmaceutical composition contemplated herein can, for example, be delivered orally via any acceptable and suitable oral preparations. Exemplary oral preparations, include, but are not limited to, for example, tablets, troches, lozenges, aqueous and oily suspensions, dispersible powders or granules, emulsions, hard and soft capsules, liquid capsules, syrups, and elixirs. Pharmaceutical compositions intended for oral administration can be prepared according to any methods known in the art for manufacturing pharmaceutical compositions intended for oral administration. In order to provide pharmaceutically palatable preparations, a pharmaceutical composition in accordance with the invention can contain at least one agent selected from sweetening agents, flavoring agents, coloring agents, demulcents, antioxidants, and preserving agents.

A tablet can, for example, be prepared by admixing at least one compound of Formula (I) or Formula (III) with at least one non-toxic pharmaceutically acceptable excipient suitable for the manufacture of tablets. Exemplary excipients include, but are not limited to, for example, inert diluents, such as, for example, calcium carbonate, sodium carbonate, lactose, calcium phosphate, and sodium phosphate; granulating and disintegrating agents, such as, for example, microcrystalline cellulose, sodium croscarmellose, corn starch, and alginic acid; binding agents, such as, for example, starch, gelatin, polyvinyl-pyrrolidone, and acacia; and lubricating agents, such as, for example, magnesium stearate, stearic acid, and talc. Additionally, a tablet can either be uncoated, or coated by known techniques to either mask the bad taste of an unpleasant tasting drug, or delay disintegration and absorption of the active ingredient in the gastrointestinal tract thereby sustaining the effects of the active ingredient for a longer period. Exemplary water soluble taste masking materials, include, but are not limited to, hydroxypropyl-methylcellulose and hydroxypropyl-cellulose. Exemplary time delay materials, include, but are not limited to, ethyl cellulose and cellulose acetate butyrate.

Hard gelatin capsules can, for example, be prepared by mixing at least one compound of Formula (I) or Formula (III) with at least one inert solid diluent, such as, for example, calcium carbonate; calcium phosphate; and kaolin.

Soft gelatin capsules can, for example, be prepared by mixing at least one compound of Formula (I) or Formula (III) with at least one water soluble carrier, such as, for example, polyethylene glycol; and at least one oil medium, such as, for example, peanut oil, liquid paraffin, and olive oil.

An aqueous suspension can be prepared, for example, by admixing at least one compound of Formula (I) or Formula (III) with at least one excipient suitable for the manufacture of an aqueous suspension. Exemplary excipients suitable for the manufacture of an aqueous suspension, include, but are not limited to, for example, suspending agents, such as, for example, sodium carboxymethylcellulose, methylcellulose, hydroxypropylmethyl-cellulose, sodium alginate, alginic acid, polyvinyl-pyrrolidone, gum tragacanth, and gum acacia; dispersing or wetting agents, such as, for example, a naturally-occurring phosphatide, e.g., lecithin; condensation products of alkylene oxide with fatty acids, such as, for example, polyoxyethylene stearate; condensation products of ethylene oxide with long chain aliphatic alcohols, such as, for example heptadecaethylene-oxycetanol; condensation products of ethylene oxide with partial esters derived from fatty acids and hexitol, such as, for example, polyoxyethylene sorbitol monooleate; and condensation products of ethylene oxide with partial esters derived from fatty acids and hexitol anhydrides, such as, for example, polyethylene sorbitan monooleate. An aqueous suspension can also contain at least one preservative, such as, for example, ethyl and n-propyl p-hydroxybenzoate; at least one coloring agent; at least one flavoring agent; and/or at least one sweetening agent, including but not limited to, for example, sucrose, saccharin, and aspartame.

Oily suspensions can, for example, be prepared by suspending at least one compound of Formula (I) or Formula (III) in either a vegetable oil, such as, for example, arachis oil; olive oil; sesame oil; and coconut oil; or in mineral oil, such as, for example, liquid paraffin. An oily suspension can also contain at least one thickening agent, such as, for example, beeswax; hard paraffin; and cetyl alcohol. In order to provide a palatable oily suspension, at least one of the sweetening agents already described hereinabove, and/or at least one flavoring agent can be added to the oily suspension. An oily suspension can further contain at least one preservative, including, but not limited to, for example, an antioxidant, such as, for example, butylated hydroxyanisol, and alpha-tocopherol.

Dispersible powders and granules can, for example, be prepared by admixing at least one compound of Formula (I) or Formula (III) with at least one dispersing and/or wetting agent; at least one suspending agent; and/or at least one preservative. Suitable dispersing agents, wetting agents, and suspending agents are as already described above. Exemplary preservatives include, but are not limited to, for example, anti-oxidants, e.g., ascorbic acid. In addition, dispersible powders and granules can also contain at least one excipient, including, but not limited to, for example, sweetening agents; flavoring agents; and coloring agents.

An emulsion of at least one compound of Formula (I) or Formula (III) can, for example, be prepared as an oil-in-water emulsion. The oily phase of the emulsions comprising compounds of Formula (I) or Formula (III) may be constituted from known ingredients in a known manner. The oil phase can be provided by, but is not limited to, for example, a vegetable oil, such as, for example, olive oil and arachis oil; a mineral oil, such as, for example, liquid paraffin; and mixtures thereof. While the phase may comprise merely an emulsifier, it may comprise a mixture of at least one emulsifier with a fat or an oil or with both a fat and an oil. Suitable emulsifying agents include, but are not limited to, for example, naturally-occurring phosphatides, e.g., soy bean lecithin; esters or partial esters derived from fatty acids and hexitol anhydrides, such as, for example, sorbitan monooleate; and condensation products of partial esters with ethylene oxide, such as, for example, polyoxyethylene sorbitan monooleate. Preferably, a hydrophilic emulsifier is included together with a lipophilic emulsifier which acts as a stabilizer. It is also preferred to include both an oil and a fat. Together, the emulsifier(s) with or without stabilizer(s) make-up the so-called emulsifying wax, and the wax together with the oil and fat make up the so-called emulsifying ointment base which forms the oily dispersed phase of the cream formulations. An emulsion can also contain a sweetening agent, a flavoring agent, a preservative, and/or an antioxidant. Emulsifiers and emulsion stabilizers suitable for use in the formulation of the present invention include Tween 60, Span 80, cetostearyl alcohol, myristyl alcohol, glyceryl monostearate, sodium lauryl sulfate, glyceryl distearate alone or with a wax, or other materials well known in the art.

In another embodiment, the compounds of Formula (I) or Formula (III) can be formulated as a nanoparticle, lipid nanoparticle, microparticle or liposome.

The compounds of Formula (I) or Formula (III) can, for example, also be delivered intravenously, subcutaneously, and/or intramuscularly via any pharmaceutically acceptable and suitable injectable form. Exemplary injectable forms include, but are not limited to, for example, sterile aqueous solutions comprising acceptable vehicles and solvents, such as, for example, water, Ringer's solution, and isotonic sodium chloride solution; sterile oil-in-water microemulsions; and aqueous or oleaginous suspensions. For example, the first or second composition may be provided for intravenous administration comprising an amount of active ingredient in the range of from about 0.2 to 150 mg. In another embodiment, the active ingredient is present in the range of from about 0.3 to 10 mg. In another embodiment, the active ingredient is present in the range of from about 4 to 8.4 mg. In one embodiment, the active ingredient is administered at a dose of about 4 mg. In another embodiment, the active ingredient is administered at a dose of about 6 mg. In another embodiment, the active ingredient is administered at a dose of about 8.4 mg.

In another embodiment, the active ingredient is administered at a dose of about 0.3 mg. In another embodiment, the active ingredient is administered at a dose of about 0.6 mg. In another embodiment, the active ingredient is administered at a dose of about 1.2 mg. In another embodiment, the active ingredient is administered at a dose of about 2.4 mg. In another embodiment, the active ingredient is administered at a dose of about 4 mg. In another embodiment, the active ingredient is administered at a dose of about 6 mg. In another embodiment, the active ingredient is administered at a dose of about 8 mg.

In one embodiment, the first composition comprising one or more compounds represented by the structure of Formula (I) or Formula (III) as described herein may be provided for intravenous administration. In one embodiment, the first composition for use as described herein comprises 0.2 to 150 mg of one or more compounds represented by the structure of Formula (III), as described herein. In another embodiment, the first composition for use as described herein comprises one or more compounds represented by the structure of Formula (III) in the range of from about 0.3 to 10 mg. In another embodiment, one or more compounds represented by the structure of Formula (III) is present in the range of from about 4 to 8.4 mg. In one embodiment, one or more compounds represented by the structure of Formula (III) is administered at a dose of about 2.4 mg. In another embodiment, one or more compounds represented by the structure of Formula (III) is administered at a dose of about 4 mg. In another embodiment, one or more compounds represented by the structure of Formula (III) is administered at a dose of about 6 mg. In another embodiment, one or more compounds represented by the structure of Formula (III) is administered at a dose of about 8.4 mg.

In one embodiment, the first dose comprises 6 mg of Compound (1) or another compound of Formula (III), and the second dose comprises a lower dosage of Compound (1) or another compound of Formula (III), which in one embodiment, comprises 4 mg of Compound (1) or another compound of Formula (III), and, in another embodiment, comprises 2.4 mg of Compound (1) or another compound of Formula (III). In another embodiment, the third does of Compound (1) or another compound of Formula (III) comprises a lower dosage of Compound (1) or another compound of Formula (III), which in one embodiment, comprises 2.4 mg of Compound (1) or another compound of Formula (III). In one embodiment, the dose of Compound (1) or related compounds is lowered if the subject experiences Grade 4 neutropenia lasting >7 days, Grade 3 or 4 febrile neutropenia lasting >24 hours, or Grade 4 thrombocytopenia or >Grade 3 thrombocytopenia with significant bleeding.

Formulations for parenteral administration may be in the form of aqueous or non-aqueous isotonic sterile injection solutions or suspensions. These solutions and suspensions may be prepared from sterile powders or granules using one or more of the carriers or diluents mentioned for use in the formulations for oral administration or by using other suitable dispersing or wetting agents and suspending agents. The compounds may be dissolved in water, polyethylene glycol, propylene glycol, ethanol, corn oil, cottonseed oil, peanut oil, sesame oil, benzyl alcohol, sodium chloride, tragacanth gum, and/or various buffers. Other adjuvants and modes of administration are well and widely known in the pharmaceutical art. The active ingredient may also be administered by injection as a composition with suitable carriers including saline, dextrose, or water, or with cyclodextrin (i.e., CAPTIS OL®), cosolvent solubilization (i.e., propylene glycol) or micellar solubilization (i.e., Tween 80).

The sterile injectable preparation may also be a sterile injectable solution or suspension in a non-toxic parenterally acceptable diluent or solvent, for example as a solution in 1,3-butanediol. Among the acceptable vehicles and solvents that may be employed are water, Ringer's solution, and isotonic sodium chloride solution. In addition, sterile, fixed oils are conventionally employed as a solvent or suspending medium. For this purpose, any bland fixed oil may be employed, including synthetic mono- or diglycerides. In addition, fatty acids such as oleic acid find use in the preparation of injectables.

A sterile injectable oil-in-water microemulsion can, for example, be prepared by 1) dissolving at least one compound of Formula (I) or Formula (III) in an oily phase, such as, for example, a mixture of soybean oil and lecithin; 2) combining the Formula (I) or Formula (III) containing oil phase with a water and glycerol mixture; and 3) processing the combination to form a microemulsion.

A sterile aqueous or oleaginous suspension can be prepared in accordance with methods already known in the art. For example, a sterile aqueous solution or suspension can be prepared with a non-toxic parenterally-acceptable diluent or solvent, such as, for example, 1,3-butane diol; and a sterile oleaginous suspension can be prepared with a sterile non-toxic acceptable solvent or suspending medium, such as, for example, sterile fixed oils, e.g., synthetic mono- or diglycerides; and fatty acids, such as, for example, oleic acid.

Pharmaceutically acceptable carriers, adjuvants, and vehicles that may be used in the pharmaceutical compositions of this invention include, but are not limited to, ion exchangers, alumina, aluminum stearate, lecithin, self-emulsifying drug delivery systems (SEDDS) such as d-alpha-tocopherol polyethyleneglycol 1000 succinate, surfactants used in pharmaceutical dosage forms such as Tweens, polyethoxylated castor oil such as CREMOPHOR® surfactant (BASF), or other similar polymeric delivery matrices, serum proteins, such as human serum albumin, buffer substances such as phosphates, glycine, sorbic acid, potassium sorbate, partial glyceride mixtures of saturated vegetable fatty acids, water, salts or electrolytes, such as protamine sulfate, disodium hydrogen phosphate, potassium hydrogen phosphate, sodium chloride, zinc salts, colloidal silica, magnesium trisilicate, polyvinyl pyrrolidone, cellulose-based substances, polyethylene glycol, sodium carboxymethylcellulose, polyacrylates, waxes, polyethylene-polyoxypropylene-block polymers, polyethylene glycol and wool fat. Cyclodextrins such as alpha-, beta-, and gamma-cyclodextrin, or chemically modified derivatives such as hydroxyalkylcyclodextrins, including 2- and 3-hydroxypropyl-cyclodextrins, or other solubilized derivatives may also be advantageously used to enhance delivery of compounds of the formulae described herein.

The pharmaceutically active compounds of this invention can be processed in accordance with conventional methods of pharmacy to produce medicinal agents for administration to subjects, including humans and other mammals. The pharmaceutical compositions may be subjected to conventional pharmaceutical operations such as sterilization and/or may contain conventional adjuvants, such as preservatives, stabilizers, wetting agents, emulsifiers, buffers etc. Tablets and pills can additionally be prepared with enteric coatings. Such pharmaceutical compositions may also comprise adjuvants, such as wetting, sweetening, flavoring, and perfuming agents.

The amounts of compounds that are administered and the dosage regimen for treating a disease condition with the first and second compositions of this invention depends on a variety of factors, including the age, weight, gender, the medical condition of the subject, the type of disease, the severity of the disease, the route and frequency of administration, and the particular compound employed. Thus, the dosage regimen may vary widely, but can be determined routinely using standard methods. A daily dose of about 0.001 to 100 mg/kg body weight, preferably between about 0.005 and about 50 mg/kg body weight and most preferably between about 0.01 to 10 mg/kg body weight, may be appropriate.

For therapeutic purposes, the active compounds of this invention are ordinarily combined with one or more adjuvants appropriate to the indicated route of administration. If administered orally, the compounds may be admixed with lactose, sucrose, starch powder, cellulose esters of alkanoic acids, cellulose alkyl esters, talc, stearic acid, magnesium stearate, magnesium oxide, sodium and calcium salts of phosphoric and sulfuric acids, gelatin, acacia gum, sodium alginate, polyvinylpyrrolidone, and/or polyvinyl alcohol, and then tableted or encapsulated for convenient administration. Such capsules or tablets may contain a controlled-release formulation as may be provided in a dispersion of active compound in hydroxypropylmethyl cellulose.

Pharmaceutical compositions of this invention comprise at least one compound of Formula (I) or Formula (III), or a salt thereof, and optionally an additional agent selected from any pharmaceutically acceptable carrier, adjuvant, and vehicle. Alternate pharmaceutical compositions of this invention comprise a compound of Formula (I) or Formula (III) described herein, or a prodrug thereof, and a pharmaceutically acceptable carrier, adjuvant, or vehicle.

The compound in accordance with Formula (I) or Formula (III) can be administered by any means suitable for the condition to be treated, which can depend on the need for site-specific treatment or quantity of Formula (I) or Formula (III) compound to be delivered. The compounds and pharmaceutical compositions of the present invention may, for example, be administered orally, mucosally, or parentally including intravascularly, intraperitoneally, subcutaneously, intramuscularly, and intrasternally. In one embodiment, the compounds and pharmaceutical compositions of the present invention are administered intravenously.

Methods of Use

In one embodiment, the present invention provides the use of the described compounds, compositions, or combinations for treating, suppressing or inhibiting an Adenoid Cystic Carcinoma (ACC) tumor in a subject. In some embodiments, the combination comprises a first composition as described herein and a second composition, as described herein.

In one embodiment, the present invention provides a method of treating a proliferative disorder, or suppressing or inhibiting a proliferative disorder in a subject, comprising the step of administering to the subject a composition comprising one or more compounds of Formula (I) or prodrugs or salts thereof, as described herein and optionally a second composition comprising one or more anti-cancer agents, wherein said optional anti-cancer agent comprises an inhibitor of protein arginine methyltransferase 5 (PRMT5), an inhibitor of Bromodomain and Extra-Terminal motif (BET), a Histone deacetylase inhibitor (HDI), a fibroblast growth factor receptor (FGFR) inhibitor, Apatinib, Lenvatinib, a retinoic acid, or a combination thereof.

In another embodiment, the present invention provides a method of treating a proliferative disorder, or suppressing or inhibiting a proliferative disorder in a subject, comprising the step of administering to the subject a composition comprising one or more compounds of Formula (I) or Formula (III) or prodrugs or salts thereof, as described herein. In some embodiments, the compound of Formula (III) comprises:

In another embodiment, the present invention provides a method of treating a carcinoma, or suppressing or inhibiting the growth of a carcinoma in a subject comprising the step of administering to the subject a composition comprising one or more compounds of Formula (I) or Formula (III) or prodrugs or salts thereof, as described herein.

In another embodiment, the present invention provides a method of suppressing ACC tumor growth in a subject, comprising the step of administering to the subject a composition comprising one or more compounds of Formula (I) or Formula (III) or prodrugs or salts thereof, as described herein.

In another embodiment, tumor growth is suppressed by 20-35%. In another embodiment, tumor growth is suppressed by 35-50%. In another embodiment, tumor growth is suppressed by 50-75%. In another embodiment, tumor growth is suppressed by 75-90%. In another embodiment, tumor growth is suppressed by 90-99%.

In another embodiment, tumor growth is suppressed by 20%. In another embodiment, tumor growth is suppressed by 25%. In another embodiment, tumor growth is suppressed by 30%. In another embodiment, tumor growth is suppressed by 35%. In another embodiment, tumor growth is suppressed by 40%. In another embodiment, tumor growth is suppressed by 45%. In another embodiment, tumor growth is suppressed by 50%. In another embodiment, tumor growth is suppressed by 55%. In another embodiment, tumor growth is suppressed by 60%. In another embodiment, tumor growth is suppressed by 65%. In another embodiment, tumor growth is suppressed by 70%. In another embodiment, tumor growth is suppressed by 75%. In another embodiment, tumor growth is suppressed by 80%. In another embodiment, tumor growth is suppressed by 85%. In another embodiment, tumor growth is suppressed by 90%. In another embodiment, tumor growth is suppressed by 95%. In another embodiment, tumor growth is suppressed by 99%.

In another embodiment, the present invention provides a method of inhibiting the growth of an ACC tumor in a subject, comprising the step of administering to the subject a composition comprising one or more compounds of Formula (I) or Formula (III) or prodrugs or salts thereof, as described herein.

In one embodiment, administration of one or more compounds, compositions, or combination as described herein inhibits tumor growth by 20-99% compared to untreated tumors or compared to tumors treated with another anti-cancer therapy. In another embodiment, tumor growth is inhibited by 20-35%. In another embodiment, tumor growth is inhibited by 35-50%. In another embodiment, tumor growth is inhibited by 50-75%. In another embodiment, tumor growth is inhibited by 75-90%. In another embodiment, tumor growth is inhibited by 90-99%.

In another embodiment, tumor growth is inhibited by 20%. In another embodiment, tumor growth is inhibited by 25%. In another embodiment, tumor growth is inhibited by 30%. In another embodiment, tumor growth is inhibited by 35%. In another embodiment, tumor growth is inhibited by 40%. In another embodiment, tumor growth is inhibited by 45%. In another embodiment, tumor growth is inhibited by 50%. In another embodiment, tumor growth is inhibited by 55%. In another embodiment, tumor growth is inhibited by 60%. In another embodiment, tumor growth is inhibited by 65%. In another embodiment, tumor growth is inhibited by 70%. In another embodiment, tumor growth is inhibited by 75%. In another embodiment, tumor growth is inhibited by 80%. In another embodiment, tumor growth is inhibited by 85%. In another embodiment, tumor growth is inhibited by 90%. In another embodiment, tumor growth is inhibited by 95%. In another embodiment, tumor growth is inhibited by 99%.

In one embodiment, inhibiting tumor growth comprises decreasing the growth of the tumor in comparison to control by 20-100%.

In another embodiment, the present invention provides a method of reducing tumor size in a subject having an ACC tumor, comprising the step of administering to the subject a composition comprising one or more compounds of Formula (I) or Formula (III) or prodrugs or salts thereof, as described herein.

In one embodiment, reducing tumor size comprises decreasing tumor size by 25%-95%. In another embodiment, reducing tumor size comprises decreasing tumor size by 25%. In another embodiment, reducing tumor size comprises decreasing tumor size by 30%. In another embodiment, reducing tumor size comprises decreasing tumor size by 35%. In another embodiment, reducing tumor size comprises decreasing tumor size by 40%. In another embodiment, reducing tumor size comprises decreasing tumor size by 45%. In another embodiment, reducing tumor size comprises decreasing tumor size by 50%. In another embodiment, reducing tumor size comprises decreasing tumor size by 55%. In another embodiment, reducing tumor size comprises decreasing tumor size by 60%. In another embodiment, reducing tumor size comprises decreasing tumor size by 65%. In another embodiment, reducing tumor size comprises decreasing tumor size by 70%. In another embodiment, reducing tumor size comprises decreasing tumor size by 75%. In another embodiment, reducing tumor size comprises decreasing tumor size by 80%. In another embodiment, reducing tumor size comprises decreasing tumor size by 85%. In another embodiment, reducing tumor size comprises decreasing tumor size by 90%. In another embodiment, reducing tumor size comprises decreasing tumor size by 95%.

In another embodiment, the present invention provides a method of reducing tumor volume in a subject having an ACC tumor, comprising the step of administering to the subject a composition comprising one or more compounds of Formula (I) or Formula (III) or prodrugs or salts thereof, as described herein and a second composition comprising one or more anti-cancer agents, wherein said anti-cancer agent comprises an inhibitor of PRMTS, an inhibitor of Bromodomain and BET, a HDI, a FGFR inhibitor, Apatinib, Lenvatinib, a retinoic acid, or a combination thereof.

In one embodiment, reducing tumor volume comprises decreasing tumor volume by 25%-95%. In another embodiment, reducing tumor volume comprises decreasing tumor volume by 25%. In another embodiment, reducing tumor volume comprises decreasing tumor volume by 30%. In another embodiment, reducing tumor volume comprises decreasing tumor volume by 35%. In another embodiment, reducing tumor volume comprises decreasing tumor volume by 40%. In another embodiment, reducing tumor volume comprises decreasing tumor volume by 45%. In another embodiment, reducing tumor volume comprises decreasing tumor volume by 50%. In another embodiment, reducing tumor volume comprises decreasing tumor volume by 55%. In another embodiment, reducing tumor volume comprises decreasing tumor volume by 60%. In another embodiment, reducing tumor volume comprises decreasing tumor volume by 65%. In another embodiment, reducing tumor volume comprises decreasing tumor volume by 70%. In another embodiment, reducing tumor volume comprises decreasing tumor volume by 75%. In another embodiment, reducing tumor volume comprises decreasing tumor volume by 80%. In another embodiment, reducing tumor volume comprises decreasing tumor volume by 85%. In another embodiment, reducing tumor volume comprises decreasing tumor volume by 90%. In another embodiment, reducing tumor volume comprises decreasing tumor volume by 95%.

In another embodiment, the present invention provides a method of prolonging relapse-free survival, progression-free survival, overall survival, or a combination thereof in a subject having an ACC tumor comprising the step of administering to the subject a composition comprising one or more compounds of Formula (I) or Formula (III) or prodrugs or salts thereof, as described herein. In one embodiment, the compound of Formula (III) comprises (2R,3S)—N-((3S)-1-methyl-2-oxo-5-phenyl-2,3-dihydro-1H-1,4-benzodiazepin-3-yl)-2,3-bis(3,3,3-trifluoropropyl)succinamide.

In another embodiment, the present invention provides a method of prolonging relapse-free survival, progression-free survival, overall survival, or a combination thereof in a subject having an ACC tumor, comprising the step of administering to the subject a composition comprising one or more compounds of Formula (I) or Formula (III) or prodrugs or salts thereof, as described herein and optionally a second composition comprising one or more anti-cancer agents, wherein said anti-cancer agent comprises an inhibitor of PRMTS, an inhibitor of Bromodomain and BET, a HDI, a FGFR inhibitor, Apatinib, Lenvatinib, a retinoic acid, or a combination thereof.

In another embodiment, the present invention provides a method of increasing or lengthening survival of a subject having an ACC tumor comprising the step of administering to the subject a composition comprising one or more compounds of Formula (I) or Formula (III) or prodrugs or salts thereof, as described herein. In one embodiment, the compound of Formula (III) comprises (2R,3S)—N-((3S)-1-methyl-2-oxo-5-phenyl-2,3-dihydro-1H-1,4-benzodiazepin-3-yl)-2,3-bis(3,3,3-trifluoropropyl)succinamide.

In another embodiment, the present invention provides a method of increasing or lengthening survival of a subject having an ACC tumor, comprising the step of administering to the subject a first composition comprising one or more compounds of Formula (I) or Formula (III) or prodrugs or salts thereof, as described herein and a second composition comprising one or more anti-cancer agents, wherein said anti-cancer agent comprises an inhibitor of PRMT5, an inhibitor of Bromodomain and BET, a HDI, a FGFR inhibitor, Apatinib, Lenvatinib, a retinoic acid, or a combination thereof.

In another embodiment, the present invention provides a method of inhibiting cell migration in a subject having an ACC tumor comprising the step of administering to the subject a composition comprising one or more compounds of Formula (I) or Formula (III) or prodrugs or salts thereof, as described herein. In one embodiment, the compound of Formula (III) comprises (2R,3S)—N-((3S)-1-methyl-2-oxo-5-phenyl-2,3-dihydro-1H-1,4-benzodiazepin-3-yl)-2,3-bis(3,3,3-trifluoropropyl)succinamide.

In another embodiment, the present invention provides a method of inhibiting cell migration in a subject having an ACC tumor comprising the step of administering to the subject a first composition comprising one or more compounds of Formula (I) or Formula (III) or prodrugs or salts thereof, as described herein and a second composition comprising one or more anti-cancer agents, wherein said anti-cancer agent comprises an inhibitor of PRMT5, an inhibitor of Bromodomain and BET, a HDI, a FGFR inhibitor, Apatinib, Lenvatinib, a retinoic acid, or a combination thereof.

In another embodiment, the present invention provides a method of inhibiting cell invasion in a subject having an ACC tumor comprising the step of administering to the subject a composition comprising one or more compounds of Formula (I) or Formula (III) or prodrugs or salts thereof, as described herein. In one embodiment, the compound of Formula (III) comprises (2R,3S)—N-((3S)-1-methyl-2-oxo-5-phenyl-2,3-dihydro-1H-1,4-benzodiazepin-3-yl)-2,3-bis(3,3,3-trifluoropropyl)succinamide.

In another embodiment, the present invention provides a method of inhibiting cell invasion in a subject having an ACC tumor comprising the step of administering to the subject a composition comprising one or more compounds of Formula (I) or Formula (III) or prodrugs or salts thereof, as described herein. In one embodiment, the compound of Formula (III) comprises (2R,3S)—N-((3S)-1-methyl-2-oxo-5-phenyl-2,3-dihydro-1H-1,4-benzodiazepin-3-yl)-2,3-bis(3,3,3-trifluoropropyl)succinamide.

In another embodiment, the present invention provides a method of avoiding resistance to therapy in a subject having an ACC tumor, comprising the step of administering to the subject a composition comprising one or more compounds of Formula (I) or Formula (III) or prodrugs or salts thereof, as described herein. In one embodiment, the compound of Formula (III) comprises (2R,3S)—N-((3S)-1-methyl-2-oxo-5-phenyl-2,3-dihydro-1H-1,4-benzodiazepin-3-yl)-2,3-bis(3,3,3-trifluoropropyl)succinamide.

In another embodiment, the present invention provides a method of avoiding resistance to therapy in a subject having an ACC tumor, comprising the step of administering to the subject a first composition comprising one or more compounds of Formula (I) or Formula (III) or prodrugs or salts thereof, as described herein and a second composition comprising one or more anti-cancer agents, wherein said anti-cancer agent comprises an inhibitor of PRMT5, an inhibitor of Bromodomain and BET, a HDI, a FGFR inhibitor, Apatinib, Lenvatinib, a retinoic acid, or a combination thereof.

In some embodiments, resistance to therapy comprises resistance to radiation therapy, chemotherapy, immunotherapy, hormone therapy, radiation, or photodynamic therapy.

In another embodiment, the present invention provides a method of treating ACC with minimal side effects in a subject, comprising the step of administering to the subject a composition comprising one or more compounds of Formula (I) or Formula (III) or prodrugs or salts thereof, as described herein. In one embodiment, the compound of Formula (III) comprises (2R,3S)—N-((3S)-1-methyl-2-oxo-5-phenyl-2,3-dihydro-1H-1,4-benzodiazepin-3-yl)-2,3-bis(3,3,3-trifluoropropyl)succinamide.

In another embodiment, the present invention provides a method of treating ACC with minimal side effects in a subject, comprising the step of administering to the subject a first composition comprising one or more compounds of Formula (I) or Formula (III) or prodrugs or salts thereof, as described herein and a second composition comprising one or more anti-cancer agents, wherein said anti-cancer agent comprises an inhibitor of PRMT5, an inhibitor of Bromodomain and BET, a HDI, a FGFR inhibitor, Apatinib, Lenvatinib, a retinoic acid, or a combination thereof. In one embodiment, the compound of Formula (III) comprises (2R,3S)—N-((3S)-1-methyl-2-oxo-5-phenyl-2,3-dihydro-1H-1,4-benzodiazepin-3-yl)-2,3-bis(3,3,3-trifluoropropyl)succinamide.

In some embodiments, minimal side effects comprise reduced weight change. In some embodiments, minimal side effects comprise reduced weight loss. In some embodiments, minimal side effects comprise reduced weight gain. In some embodiments, weight loss or weight gain are associated with loss of appetite, nausea, diarrhea, or vomiting.

In some embodiments, the present invention provides a method of delaying, inhibiting, or suppressing relapse of active ACC comprising the step of administering to the subject a composition comprising one or more compounds of Formula (I) or Formula (III) or prodrugs or salts thereof, as described herein. In one embodiment, the compound of Formula (III) comprises Compound (1) as described herein.

In some embodiments, the present invention provides a method of delaying, inhibiting, or suppressing relapse of active ACC comprising the step of administering to the subject a first composition comprising one or more compounds of Formula (I) or Formula (III) or prodrugs or salts thereof, as described herein and a second composition comprising one or more anti-cancer agents, wherein said anti-cancer agent comprises an inhibitor of PRMT5, an inhibitor of Bromodomain and BET, a HDI, a FGFR inhibitor, Apatinib, Lenvatinib, a retinoic acid, or a combination thereof.

In another embodiment, the present invention provides a method of delaying, inhibiting, or suppressing metastasis of an ACC tumor in a subject, comprising the step of administering to the subject a composition comprising one or more compounds of Formula (I) or Formula (III) or prodrugs or salts thereof, as described herein. In one embodiment, the compound of Formula (III) comprises Compound (1) as described herein.

In some embodiments, the present invention provides a method of delaying, inhibiting, or suppressing metastasis of an ACC tumor in a subject, comprising the step of administering to the subject a first composition comprising one or more compounds of Formula (I) or Formula (III) or prodrugs or salts thereof, as described herein and a second composition comprising one or more anti-cancer agents, wherein said anti-cancer agent comprises an inhibitor of PRMT5, an inhibitor of Bromodomain and BET, a HDI, a FGFR inhibitor, Apatinib, Lenvatinib, a retinoic acid, or a combination thereof.

In another embodiment, the present invention provides a method of downregulating the expression of Notch-related genes in a subject having an ACC tumor, comprising the step of administering to the subject a composition comprising one or more compounds of Formula (I) or Formula (III) or prodrugs or salts thereof, as described herein. In one embodiment, the compound of Formula (III) comprises Compound (1) as described herein.

In another embodiment, the present invention provides a method of downregulating the expression of Notch-related genes in a subject having an ACC tumor, comprising the step of administering to the subject a composition comprising Compound (1) or prodrugs or salts thereof, as described herein.

In one embodiment, the Notch-related gene that is downregulated comprises HIF1A. In another embodiment, the Notch-related gene that is downregulated comprises HES2. In another embodiment, the Notch-related gene that is downregulated comprises HESS. In another embodiment, the Notch-related gene that is downregulated comprises HEYL. In another embodiment, the Notch-related gene that is downregulated comprises HEY1. In another embodiment, the Notch-related gene that is downregulated comprises HEY2. In another embodiment, the Notch-related gene that is downregulated comprises NRARP. In another embodiment, the Notch-related gene that is downregulated comprises BCL2A1. In another embodiment, the Notch-related gene that is downregulated comprises MYC.

In some embodiments, the method of downregulating the expression of Notch-related genes in a subject having an ACC tumor further comprises administering an inhibitor of PRMTS, an inhibitor of Bromodomain and BET, a HDI, a FGFR inhibitor, Apatinib, Lenvatinib, a retinoic acid, or a combination thereof.

In another embodiment, the present invention provides a method of downregulating the expression of Notch-related genes in a subject having an ACC tumor, comprising the step of administering to the subject a first composition comprising one or more compounds of Formula (I) or Formula (III) or prodrugs or salts thereof, as described herein and a second composition comprising one or more anti-cancer agents, wherein said anti-cancer agent comprises an inhibitor of PRMTS, an inhibitor of Bromodomain and BET, a HDI, a FGFR inhibitor, Apatinib, Lenvatinib, a retinoic acid, or a combination thereof.

In another embodiment, the present invention provides a method of downregulating the expression of Notch-related genes in a subject having an ACC tumor, comprising the step of administering to the subject a first composition comprising Compound (1) or prodrugs or salts thereof, as described herein and a second composition comprising one or more anti-cancer agents, wherein said anti-cancer agent comprises an inhibitor of PRMTS, an inhibitor of Bromodomain and BET, a HDI, a FGFR inhibitor, Apatinib, Lenvatinib, a retinoic acid, or a combination thereof.

In another embodiment, the present invention provides a method of upregulating the expression of Notch-related genes in a subject having an ACC tumor, comprising the step of administering to the subject a composition comprising one or more compounds of Formula (I) or Formula (III) or prodrugs or salts thereof, as described herein.

In one embodiment, the Notch-related gene that is upregulated comprises HESS. In another embodiment, the Notch-related gene that is upregulated comprises HES4. In another embodiment, the Notch-related gene that is upregulated comprises HEY2. In another embodiment, the Notch-related gene that is upregulated comprises H1F1A.

In another embodiment, the present invention provides a method of upregulating the expression of Notch-related genes in a subject having an ACC tumor, comprising the step of administering to the subject a composition comprising Compound (1) or prodrugs or salts thereof, as described herein.

In some embodiments, the method of upregulating the expression of Notch-related genes in a subject having an ACC tumor further comprises administering an inhibitor of PRMTS, an inhibitor of Bromodomain and BET, a HDI, a FGFR inhibitor, Apatinib, Lenvatinib, a retinoic acid, or a combination thereof.

In another embodiment, the present invention provides a method of upregulating the expression of Notch-related genes in a subject having an ACC tumor, comprising the step of administering to the subject a first composition comprising one or more compounds of Formula (I) or Formula (III) or prodrugs or salts thereof, as described herein and a second composition comprising one or more anti-cancer agents, wherein said anti-cancer agent comprises an inhibitor of PRMT5, an inhibitor of Bromodomain and BET, a HDI, a FGFR inhibitor, Apatinib, Lenvatinib, a retinoic acid, or a combination thereof.

In another embodiment, the present invention provides a method of upregulating the expression of Notch-related genes in a subject having an ACC tumor, comprising the step of administering to the subject a first composition comprising Compound (1) or prodrugs or salts thereof, as described herein and a second composition comprising one or more anti-cancer agents, wherein said anti-cancer agent comprises an inhibitor of PRMT5, an inhibitor of Bromodomain and BET, a HDI, a FGFR inhibitor, Apatinib, Lenvatinib, a retinoic acid, or a combination thereof.

In some embodiments, the Notch-related genes comprise Notch target genes. In some embodiments, the Notch-related genes comprise genes downstream of Notch in the Notch signaling pathway. In some embodiments, the Notch-related genes comprise Notch-regulated genes.

In some embodiments, the Notch-related genes comprise HES2, HES4, HESS, HEYL, HEY1, HEY2, NRARP, BCL2A1, HIF1A, or a combination thereof. In some embodiments, the Notch-related genes comprise HES1, MYC, or a combination thereof.

In some embodiments, “downregulating” or “upregulating” the expression of a Notch-related gene may encompass the gene's RNA level relative to its RNA level at a different time, in a different tissue or cell (which, in some embodiments, is a non-tumor tissue or cell), or in other subjects, and is presented as fold change. For example, in some embodiments, determining that the expression of a gene is downregulated or upregulated is done by comparing the RNA level of the gene prior to treatment with the RNA level of the gene after treatment. A skilled artisan would be knowledgeable of the tools and methods available for determining gene expression levels, or RNA levels, for example, by RT-PCR, or using the methods described in Example 5.

In some embodiments, the present invention provides a method of inhibiting, treating or suppressing an ACC tumor in a subject, comprising the steps of: (a) administering to the subject a composition comprising one or more compounds of Formula (I) or (III) or prodrugs or salts thereof, as described herein; (b) measuring plasma total free active concentration of said compound of Formula (I) or (III); and (c) adjusting the administered dose of said compound of Formula (I) or (III).

In some embodiments, adjusting the administered dose comprises:

• • i. if the plasma total free active concentration of said compound of Formula (I) or (III) of said subject is at the desired concentration then the dose administered is continued;
  • ii. if the plasma total free active concentration of said compound of Formula (I) or (III) of said subject is below the desired concentration then the dose administered is increased; and
  • iii. if the plasma total free active concentration of said compound of Formula (I) or (III) of said subject is above the desired concentration then the dose administered is decreased.

A skilled artisan would be knowledgeable of the tools and methods available for determining measuring plasma total free active concentration of said compound of Formula (I) or (III). In some embodiments, the “desired concentration” is the effective concentration (EC), which may encompass a dose or concentration of a drug that produces a biological response, which in some embodiments, is effective in reducing tumor size or inhibits tumor growth.

It is to be understood that each of these methods is a separate embodiment of the invention.

In another embodiment, the present invention provides a method of treating, suppressing or inhibiting a proliferative disease in a subject comprising the step of administering to the subject a combination consisting essentially of a first composition comprising one or more compounds represented by the structure of Formula (I) as described hereinabove, and a second composition comprising one or more anti-cancer agents, as described hereinabove. In another embodiment, the present invention provides a method of treating, suppressing or inhibiting a proliferative disease in a subject comprising the step of administering to the subject a first composition consisting of one or more compounds represented by the structure of Formula (I) as described hereinabove, and a second composition comprising one or more anti-cancer agents, as described hereinabove.

In one embodiment, the present invention provides the use of a therapeutically acceptable amount of the combination therapy as described herein for treating, suppressing or inhibiting a proliferative disease in a subject. In another embodiment, the present invention provides the use of a therapeutically effective amount of the combination therapy as described herein for treating, suppressing or inhibiting a proliferative disease in a subject. In another embodiment, the present invention provides the use of a synergistically effective amount of the combination therapy as described herein for treating, suppressing or inhibiting a proliferative disease in a subject. In another embodiment, the present invention provides the use of a synergistically therapeutically effective amount of one or more combinations as described herein for treating, suppressing or inhibiting a proliferative disease in a subject.

In another embodiment, the carcinoma comprises Adenoid Cystic Carcinoma (ACC). In some embodiments, ACC comprises ACC of the Trachea. In some embodiments, ACC comprises ACC of the lacrimal gland. In some embodiments, ACC comprises ACC of the salivary gland. In some embodiments, ACC comprises ACC of the sublingual gland. In some embodiments, ACC comprises ACC of the parotid gland. In some embodiments, ACC comprises ACC of the submandibular gland. In some embodiments, ACC comprises ACC of the submaxillary gland. In some embodiments, ACC comprises ACC of the vulva. In some embodiments, ACC comprises ACC of the breast. In some embodiments, ACC comprises ACC of the skin. In some embodiments, ACC comprises ACC of the head and neck.

In one embodiment, the ACC tumor comprises tubular ACC, cribriform ACC, or solid ACC. In one embodiment, the ACC tumor comprises tubular ACC. In another embodiment, the ACC tumor comprises cribriform ACC. In another embodiment, the ACC tumor comprises a solid ACC. In one embodiment, the ACC tumor comprises a Notch-activating mutation. In one embodiment, the ACC tumor comprises recurrent ACC. In one embodiment, the ACC tumor comprises metastatic ACC.

In another embodiment, the proliferative disease comprises one or more of the proliferative diseases described in WO 2019/222231, which is incorporated by reference herein in its entirety.

In some embodiments, the methods of the present invention further comprise the step of identifying a candidate subject for treatment with a first composition comprising one or more compounds represented by the structure of Formula (I) or (III), as described herein, and a second composition comprising one or more anti-cancer agents, as described herein, comprising the step of evaluating Notch gene function in the subject. In one embodiment, evaluating Notch gene function comprises determining if there are Notch mutations. In one embodiment, the Notch mutations are in a PEST region of a Notch gene. In another embodiment, the Notch mutations are in the NRR of a Notch gene. In another embodiment, evaluating Notch gene function comprises determining the expression of Notch-regulated genes. In one embodiment, the genes are downstream of Notch in the Notch signaling pathway.

In some embodiments, evaluating Notch gene function comprises RNA-seq or another RNA sequencing tool to reveal the presence and quantity of RNA in a biological sample at a given moment. In another embodiment, other methods of evaluating the quantity of downstream Notch protein RNA may be utilized, as are well known in the art. In another embodiment, the evaluator comprises a DNA sequencing method, as are known in the art.

In another embodiment, the present invention provides a method of inhibiting the progression of ACC, a method of decreasing tumor diameter, a method of decreasing tumor volume, a method of inhibiting an increase in tumor diameter or tumor volume. In one embodiment, the inhibition of tumor growth using the methods as described herein may be seen during the period in which the compounds of the present invention are administered. In another embodiment, the inhibition may be seen after the last dose of the treatment as described herein.

In one embodiment, a subject as described herein is being treated with or has been previously treated with radiation therapy, chemotherapy, transplantation, immunotherapy, hormone therapy, or photodynamic therapy, or has been surgically treated.

Notch-Activating Genetic Alterations

In one embodiment, a cancer as described herein comprises a Notch activating alteration. In another embodiment, a cancer as described herein comprises a Notch activating genetic alteration. In another embodiment, a cancer as described herein comprises a Notch activating mutation. In another embodiment, a cancer as described herein comprises a Notch activating genetic mutation. In another embodiment, a cancer as described herein comprises a Notch mutation. In another embodiment, a cancer as described herein comprises a Notch altering mutation.

In one embodiment, a Notch-activating genetic alteration comprises a mutation in a gene that activates the Notch signaling pathway.

In one embodiment, a Notch-activating genetic alteration comprises a sequence variant of one or more Notch-related genes. In another embodiment, a Notch-activating genetic alteration comprises a mutation in one or more Notch-related genes.

In one embodiment, the mutation in one or more Notch-related genes induces a gain of function (GOF) in Notch activity. In one embodiment, a subject whose cancer cells comprise one or more mutations leading to Notch GOF are administered monotherapy with a compound of Formula (I) as described herein. In another embodiment, a subject whose cancer cells comprise one or more mutations leading to Notch GOF are administered a combination therapy comprising a compound of Formula (I) as described herein and another anti-cancer compound.

In another embodiment, the mutation in one or more Notch-related genes induces a loss of function (LOF) in Notch activity. In one embodiment, a subject whose cancer cells comprise one or more mutations leading to Notch LOF are administered a combination therapy comprising a compound of Formula (I) as described herein and another anti-cancer therapy. In one embodiment, the anti-cancer therapy comprises a chemotherapy.

In another embodiment, it is not known if the mutation is a GOF or LOF Notch mutation. In one embodiment, the mutation comprises a variant of unknown significance (VUS).

In one embodiment, the mutation in one or more Notch-related genes comprises a negative regulatory region (NRR) mutation. In another embodiment, the mutation in one or more Notch-related genes comprises a proline, glutamic acid, serine and threonine rich domain (PEST) mutation. In another embodiment, the mutation in one or more Notch-related genes comprises NRR and PEST mutations.

In one embodiment, the Notch-activating mutation functionally inactivates the PEST domain of the Notch gene. In another embodiment, the Notch-activating mutation functionally inactivates the negative regulatory region (NRR) of the Notch gene.

In one embodiment, the Notch-activating mutation comprises a sequence variant in the NRR domain of a Notch gene. In another embodiment, the Notch-activating mutation comprises a sequence variant in the PEST domain of a Notch gene. In another embodiment, the Notch-activating mutation comprises a sequence variant in both the NRR domain and the PEST domain of one or more Notch genes. In another embodiment, the Notch-activating mutation comprises a gene rearrangement in the ectodomain of a Notch gene. In another embodiment, the gene rearrangement removes most of the ectodomain.

In another embodiment, the gene rearrangement functionally inactivates most of the NRR. In one embodiment, the gene rearrangement removes some of the NRR. In another embodiment, the gene rearrangement removes most of the NRR.

In one embodiment, the Notch-activating mutation is a gain-of-function (GOF) mutation in one or more Notch genes. In one embodiment, such GOF mutations may be associated with the Notch extracellular negative regulatory region (NRR), the Notch intracellular C-terminal PEST degron domain, or both. In one embodiment, the NRR maintains the receptor in the off state in the absence of ligand. In one embodiment, the C-terminal PEST degron domain promotes the rapid turnover of activated Notch receptors.

In one embodiment, a GOF NRR mutation comprises one or more point mutations, one or more in-frame insertions or deletions (indels), one or more gene rearrangements, or a combination thereof. In one embodiment, the mutation perturbs the structure of the NRR. In another embodiment, the mutation removes the coding sequence of the NRR. In one embodiment, the NRR mutation promotes ligand-independent Notch cleavage by ADAMs and/or gamma-secretase, and in one embodiment, generates high levels of NICD. In one embodiment the NRR mutation is in Notchl. In another embodiment, the NRR mutation is in Notch3.

In another embodiment, the GOF mutation may be associated with PEST domain mutations, which, in one embodiment, comprise nonsense mutations, out-of-frame indels, large deletions that remove the PEST domain and sustain the activity of Notchl Intracellular Domain (NICD1), or a combination thereof.

In one embodiment, the presence of PEST mutations in cis with NRR mutations synergistically increases Notch activation. In one embodiment, the NRR and PEST domain mutations are in a single Notch allele. In another embodiment, the NRR and PEST domain mutations are in different Notch alleles.

In another embodiment, Notch GOF mutations are associated with one or more truncated forms of any one of the four Notch genes. In one embodiment, such truncations comprise rearrangements which, in one embodiment, remove the sequences encoding the ectodomain of the receptor. In one embodiment, these rearrangements produce Notch genes that drive the transcription of aberrant 5′ -deleted transcripts encoding constitutively active polypeptides that lack the EGF-like ligand binding domain and/or NRR regions.

In one embodiment the Notch-activating mutation is an NRR mutation described in Weng AP, et al., Science. 2004; 306(5694):269-271 or Stoeck A, et al. Cancer Discov. 2014; 4(10):1154-1167, each of which is herein incorporated by reference in its entirety.

In one embodiment, a mutation in one or more Notch-related genes comprises a mutation in a Notch gene hotspot. In one embodiment, a Notch gene hotspot comprises an NRR domain, a PEST domain, or a combination thereof. In one embodiment, a mutation in one or more Notch-related genes comprises a mutation in an NRR. In another embodiment, a mutation in one or more Notch-related genes comprises a mutation in a PEST domain. In another embodiment, a mutation in one or more Notch-related genes comprises a mutation in an NRR and a PEST domain. In one embodiment, these mutations are GOF mutations.

In another embodiment, the mutation in one or more Notch-related genes comprises a gene rearrangement that removes most of the Notch ectodomain, including the NRR. In one embodiment, these mutations are GOF mutations.

In another embodiment, the Notch-activating genetic alteration comprises a missense mutation. In another embodiment, the Notch-activating genetic alteration comprises a nonsense mutation. In another embodiment, the Notch-activating genetic alteration comprises an insertion. In another embodiment, the Notch-activating genetic alteration comprises a deletion. In another embodiment, the Notch-activating genetic alteration comprises a duplication. In another embodiment, the Notch-activating genetic alteration comprises a frameshift mutation. In another embodiment, the Notch-activating genetic alteration comprises a repeat expansion. In another embodiment, Notch-activating genetic alteration comprises a gene fusion.

In one embodiment, the Notch-related gene comprises a Notchl-related gene. In another embodiment, the Notch-related gene comprises a Notch2-related gene. In another embodiment, the

Notch-related gene comprises a Notch3-related gene. In another embodiment, the Notch-related gene comprises a Notch4-related gene.

In another embodiment, the Notch-related gene comprises Notchl. In another embodiment, the Notch-related gene comprises Notch2. In another embodiment, the Notch-related gene comprises Notch3. In another embodiment, the Notch-related gene comprises Notch4.

In one embodiment, the Notch-activating mutation comprises a Notch 1 mutation, a Notch 2 mutation, a Notch 3 mutation, a Notch 4 mutation, or a combination thereof.

In one embodiment, the cancer, carcinoma, or ACC comprises a Notch GOF mutation and/or a Notch-activating genetic alteration. In another embodiment, the cancer, carcinoma, or ACC lacks a Notch GOF mutation and/or a Notch-activating genetic alteration.

Definitions

Unless specifically stated otherwise herein, references made in the singular may also include the plural. For example, “a” and “an” may refer to either one, or one or more.

The definitions set forth herein take precedence over definitions set forth in any patent, patent application, and/or patent application publication incorporated herein by reference.

Listed below are definitions of various terms used to describe the present invention. These definitions apply to the terms as they are used throughout the specification (unless they are otherwise limited in specific instances) either individually or as part of a larger group.

As used herein, the term “administering” refers to bringing in contact with a compound of the present invention. In one embodiment, the compositions are applied locally. In another embodiment, the compositions are applied systemically. Administration can be accomplished to cells or tissue cultures, or to living organisms, for example humans.

As used herein, the terms “administering,” “administer,” or “administration” refer to deliver one or more compounds or compositions to a subject parenterally, enterally, or topically. Illustrative examples of parenteral administration include, but are not limited to, intravenous, intramuscular, intraarterial, intrathecal, intracapsular, intraorbital, intracardiac, intradermal, intraperitoneal, transtracheal, subcutaneous, subcuticular, intraarticulare, subcapsular, subarachnoid, intraspinal and intrasternal injection and infusion. Illustrative examples of enteral administration include, but are not limited to oral, inhalation, intranasal, sublingual, and rectal administration. Illustrative examples of topical administration include, but are not limited to, transdermal and vaginal administration. In particular embodiments, an agent or composition is administered parenterally, optionally by intravenous administration or oral administration to a subject.

In one embodiment, a composition of the present invention comprises a pharmaceutically acceptable composition. In one embodiment, the phrase “pharmaceutically acceptable” is employed herein to refer to those compounds, materials, compositions, combinations, and/or dosage forms which are, within the scope of sound medical judgment, suitable for use in contact with the tissues of human beings and animals without excessive toxicity, irritation, allergic response, or other problem or complication, commensurate with a reasonable benefit/risk ratio.

In one embodiment, a composition or combination of the present invention is administered in a therapeutically effective amount. In one embodiment, a “therapeutically effective amount” is intended to include an amount of a compound of the present invention alone or an amount of the combination of compounds claimed or an amount of a compound of the present invention in combination with other active ingredients effective to act as an inhibitor to a NOTCH receptor, effective to inhibit gamma secretase, or effective to treat or prevent proliferative diseases such as cancer. In one embodiment, a “therapeutically effective amount” of a composition of the invention is that amount of composition which is sufficient to provide a beneficial effect to the subject to which the composition is administered.

As used herein, “treating” or “treatment” cover the treatment of a disease-state in a mammal, particularly in a human, and include: (a) preventing the disease-state from occurring in a mammal, in particular, when such mammal is predisposed to the disease-state but has not yet been diagnosed as having it; (b) inhibiting the disease-state, i.e., arresting its development; and/or (c) relieving the disease-state, i.e., causing regression of the disease state.

In one embodiment, “treating” refers to, in one embodiment, therapeutic treatment and, in another embodiment, prophylactic or preventative measures. In one embodiment, the goal of treating is to prevent or lessen the targeted pathologic condition or disorder as described hereinabove. Thus, in one embodiment, treating may include directly affecting or curing, suppressing, inhibiting, preventing, reducing the severity of, delaying the onset of, reducing symptoms associated with the disease, disorder or condition, or a combination thereof. Thus, in one embodiment, “treating” refers inter alia to delaying progression, expediting remission, inducing remission, augmenting remission, speeding recovery, increasing efficacy of or decreasing resistance to alternative therapeutics, or a combination thereof. In one embodiment, “preventing” refers, inter alia, to delaying the onset of symptoms, preventing relapse to a disease, decreasing the number or frequency of relapse episodes, increasing latency between symptomatic episodes, or a combination thereof. In one embodiment, “suppressing” or “inhibiting”, refers inter alia to reducing the severity of symptoms, reducing the severity of an acute episode, reducing the number of symptoms, reducing the incidence of disease-related symptoms, reducing the latency of symptoms, ameliorating symptoms, reducing secondary symptoms, reducing secondary infections, prolonging subject survival, or a combination thereof.

In one embodiment, the term “decreasing the size of the tumor” as used herein is assessed using the “Response Evaluation Criteria In Solid Tumors” (RECIST). In one embodiment, RECIST measures reduction in tumor size by measuring the longest dimension of a target lesion. In one embodiment, the target lesion is selected on the basis of its size (lesion with the longest diameter) and its suitability for accurate repeated measurements (either by imaging techniques or clinically). In one embodiment, all other lesions (or sites of disease) are identified as non-target lesions and are also recorded at baseline. Measurements of these lesions are not required, but the presence or absence of each is noted throughout follow-up.

In one embodiment, the term “decreasing the volume of the tumor” as used herein is assessed using the radiological tumor response evaluation criteria. In one embodiment, the maximum diameter (width) of the tumor is measured in two dimensions in the translation plane and its largest perpendicular diameter on the same image (thickness), according to the World Health Organization (WHO).

According to any of the methods of the present invention and in one embodiment, a subject as described herein is human. In another embodiment, the subject is a mammal. In another embodiment, the subject is a primate, which in one embodiment, is a non-human primate. In another embodiment, the subject is murine, which in one embodiment is a mouse, and, in another embodiment is a rat. In another embodiment, the subject is canine, feline, bovine, equine, caprine, ovine, porcine, simian, ursine, vulpine, or lupine. In one embodiment, the subject is a chicken or fish.

In one embodiment, the compositions as described herein comprise the components of the composition (i.e., one or more compounds of Formula (I)) as described herein. In another embodiment, the compositions as described herein consist of the components of the composition (i.e., one or more compounds of Formula (I)) as described herein). In another embodiment, the compositions as described herein consist essentially of the components of the composition (i.e., one or more compounds of Formula (I)) as described herein.

It is to be understood that the compositions, combinations and methods of the present invention comprising the elements or steps as described herein may, in another embodiment, consist of those elements or steps, or in another embodiment, consist essentially of those elements or steps.

In some embodiments, the term “comprise” refers to the inclusion of the indicated active agents, such as the gamma secretase inhibitor, as well as inclusion of other active agents, and pharmaceutically or physiologically acceptable carriers, excipients, emollients, stabilizers, etc., as are known in the pharmaceutical industry. In some embodiments, the term “consisting essentially of” refers to a composition, whose only active ingredients are the indicated active ingredients. However, other compounds may be included which are for stabilizing, preserving, etc. the formulation, but are not involved directly in the therapeutic effect of the indicated active ingredients. In some embodiments, the term “consisting essentially of” may refer to components which facilitate the release of the active ingredient. In some embodiments, the term “consisting” refers to a composition, which contains the active ingredients and a pharmaceutically acceptable carrier or excipient.

Timing and Site of Administration

In one embodiment, in the methods of the present invention, the administration of a second composition comprising one or more anti-cancer agents occurs prior to the administration of the first composition comprising one or more compounds of Formula (I) or Formula (III). In another embodiment, in the methods of the present invention, the administration of a second composition comprising one or more anti-cancer agents occurs concurrent with the administration of the first composition comprising one or more compounds of Formula (I) or Formula (III). In another embodiment, in the methods of the present invention, the administration of a second composition comprising one or more anti-cancer agents occurs following the administration of the first composition comprising one or more compounds of Formula (I) or Formula (III). In one embodiment, concurrent administration comprises administering a single combination comprising the second composition comprising one or more anti-cancer agents and the first composition comprising one or more compounds of Formula (I) or Formula (III). In another embodiment, concurrent administration comprises administering separate compositions.

In one embodiment, the administration of the second composition comprising one or more anti-cancer agents occurs at the same site as the administration of the first composition comprising one or more compounds of Formula (I) or Formula (III).

In one embodiment, the first composition comprising one or more compounds of Formula (I) or Formula (III) is administered several days before and after the administration of the second composition comprising one or more anti-cancer agents. In one embodiment, the first composition comprising one or more compounds of Formula (I) or Formula (III) is administered 1, 2, 3, 4, or 5 days prior to the administration of the second composition comprising one or more anti-cancer agents. In one embodiment, the first composition comprising one or more compounds of Formula (I) or Formula (III) is administered 1, 2, 3, 4, or 5 days subsequent to the administration of the second composition comprising one or more anti-cancer agents. In another embodiment, the first composition comprising one or more compounds of Formula (I) or Formula (III) is administered one day before and up to 9 days following administration of the second composition comprising one or more anti-cancer agents. In another embodiment, the first composition comprising one or more compounds of Formula (I) or Formula (III) is administered one day before and on days 1, 8, and 9 following administration of the second composition comprising one or more anti-cancer agents. In another embodiment, the first composition comprising one or more compounds of Formula (I) or Formula (III) is administered one day before and 9 days following administration of the second composition comprising one or more anti-cancer agents. In another embodiment, the first composition comprising one or more compounds of Formula (I) or Formula (III) is administered one day before and daily for 9 days following administration of the second composition comprising one or more anti-cancer agents. In another embodiment, the first composition comprising one or more compounds of Formula (I) or Formula (III) is administered one day before and on day 9 following administration of the second composition comprising one or more anti-cancer agents.

In some embodiments, one or more compositions of the present invention are administered at least once during a treatment cycle. In some embodiments, the compositions of the present invention are administered to the subject on the same days. In some embodiments, the compositions of the present invention are administered to the subject on the different days. In some embodiments, one or more compositions of the present invention are administered to the subject on the same days and on different days according to treatment schedules.

In particular embodiments, one or more compositions of the present invention are administered to the subject over one or more treatment cycles. A treatment cycle can be at least two, at least three, at least four, at least five, at least six, at least seven, at least 14, at least 21, at least 28, at least 48, or at least 96 days or more. In one embodiment, a treatment cycle is 28 days. In certain embodiments, the compositions are administered over the same treatment cycle or concurrently over different treatment cycles assigned for each composition. In various embodiments, the treatment cycle is determined by a health care professional based on conditions and needs of the subject.

In some embodiments, a composition is administered on at least one day, at least two days, at least three days, at least four days, at least five days, at least six days, at least seven days, at least eight days, at least nine days, at least ten days, at least eleven days, at least twelve days, at least 13 days, at least 14 days, at least 21 days, or all 28 days of a 28 day treatment cycle. In particular embodiments, a composition is administered to a subject once a day. In other particular embodiments, a composition is administered twice a day.

In some embodiments, the first and second compositions of the present invention are administered to the subject over one or more treatment cycles. In some embodiments, the treatment cycle comprises administration of the composition on 2 consecutive days followed by 5 consecutive days with no administration (2 days on/5 days off). In some embodiments, the treatment cycle comprises administration of the composition on 3 consecutive days followed by 4 consecutive days with no administration (3 days on/4 days off). In some embodiments, the treatment cycle comprises administration of the composition on 4 consecutive days followed by 3 consecutive days with no administration (4 days on/3 days off). In some embodiments, the treatment cycle comprises administration of the composition on 5 consecutive days followed by 2 consecutive days with no administration (5 days on/2 days off).

In some embodiments, in the methods of the present invention, the first composition comprising a compound of Formula (III) is administered once per week. In some embodiments, in the methods of the present invention, the first composition comprising one or more compounds of Formula (III) is administered once every two weeks.

In some embodiments, in the methods of the present invention, the first composition comprising one or more compounds of Formula (III) or the second composition comprising one or more anti-cancer agents are intravenously administered to the subject. In some embodiments, in the methods of the present invention, the first composition comprising one or more compounds of Formula (III) or the second composition comprising one or more anti-cancer agents are orally administered to the subject.

In some embodiments, in the methods of the present invention, the first composition comprising one or more compounds of Formula (III) and the second composition comprising one or more anti-cancer agents are administered together. In some embodiments, in the methods of the present invention, the first composition comprising one or more compounds of Formula (III) and the second composition comprising one or more anti-cancer agents are administered at separate sites or at separate times. In some embodiments, in the methods of the present invention, the first composition comprising one or more compounds of Formula (III) and the second composition comprising one or more anti-cancer agents are administered at separate sites. In some embodiments, in the methods of the present invention, the first composition comprising one or more compounds of Formula (III) and the second composition comprising one or more anti-cancer agents are administered at separate times.

In one embodiment, one or more of the first and second compositions described herein are administered in one to four doses per day. In one embodiment, one or more of the first and second compositions as described herein are administered once per day. In another embodiment, one or more of the first and second compositions as described herein are administered twice per day. In another embodiment, one or more of the first and second compositions as described herein are administered three times per day. In another embodiment, one or more of the first and second compositions as described herein are administered four times per day. In another embodiment, one or more of the first and second compositions as described herein are administered once every two days, once every three days, twice a week, once a week, once every 2 weeks, once every 3 weeks.

In one embodiment, one or more of the first and second compositions as described herein are administered for 7 days to 28 days. In another embodiment, one or more of the first and second compositions as described herein are administered for 7 days to 8 weeks. In another embodiment, one or more of the first and second compositions as described herein are administered for 7 days to 50 days. In another embodiment, one or more of the first and second compositions as described herein are administered for 7 days to six months. In another embodiment, one or more of the first and second compositions as described herein are administered for 7 days to one and half years. In another embodiment, one or more of the first and second compositions as described herein are administered for 14 days to 12 months. In another embodiment, one or more of the first and second compositions as described herein are administered for 14 days to 3 years. In another embodiment, one or more of the first and second compositions as described herein are administered for several years. In another embodiment, one or more of the first and second compositions as described herein are administered for one month to six months.

In one embodiment, one or more of the first and second compositions as described herein are administered for 7 days. In another embodiment, one or more of the first and second compositions as described herein are administered for 14 days. In another embodiment, one or more of the first and second compositions as described herein are administered for 21 days. In another embodiment, one or more of the first and second compositions as described herein are administered for 28 days. In another embodiment, one or more of the first and second compositions as described herein are administered for 50 days. In another embodiment, one or more of the first and second compositions as described herein are administered for 56 days. In another embodiment, one or more of the first and second compositions as described herein are administered for 84 days. In another embodiment, one or more of the first and second compositions as described herein are administered for 90 days. In another embodiment, one or more of the first and second compositions as described herein are administered for 120 days.

The number of times a first or second composition is administered to a subject in need thereof depends on the discretion of a medical professional, the disorder, the severity of the disorder, and the subject's response to the formulation. In some embodiments, the first and second compositions disclosed herein are administered once to a subject in need thereof with a mild acute condition. In some embodiments, the first and second compositions disclosed herein are administered more than once to a subject in need thereof with a moderate or severe acute condition. In the case wherein the subject's condition does not improve, upon the doctor's discretion the first or second composition may be administered chronically, that is, for an extended period of time, including throughout the duration of the subject's life in order to ameliorate or otherwise control or limit the symptoms of the subject's disease or condition.

In the case wherein the subject's status does improve, upon the doctor's discretion the first or second composition may administered continuously; or, the dose of drug being administered may be temporarily reduced or temporarily suspended for a certain length of time (i.e., a “drug holiday”). The length of the drug holiday varies between 2 days and 1 year, including by way of example only, 2 days, 3 days, 4 days, 5 days, 6 days, 7 days, 10 days, 12 days, 15 days, 20 days, 28 days, 35 days, 50 days, 70 days, 100 days, 120 days, 150 days, 180 days, 200 days, 250 days, 280 days, 300 days, 320 days, 350 days, and 365 days. The dose reduction during a drug holiday may be from 10%-100%, including by way of example only 10%, 15%, 20%, 25%, 30%, 35%, 40%, 45%, 50%, 55%, 60%, 65%, 70%, 75%, 80%, 85%, 90%, 95%, and 100%.

Kits

The present invention further comprises combinations of the compositions of the present invention and, optionally, one or more additional agents in kit form, e.g., where they are packaged together or placed in separate packages to be sold together as a kit, or where they are packaged to be formulated together.

In certain embodiments, the kit comprises a therapeutic or prophylactic composition containing an effective amount of the compound of Formula (I) or Formula (III) or Compound (1), as described herein, which in one embodiment, comprises 4 mg or 6 mg of the compound of Formula (III), and optionally a second composition comprising one or more anti-cancer agents. In certain embodiments, the kit comprises a sterile container which contains therapeutic or prophylactic agents; such containers can be boxes, ampules, bottles, vials, tubes, bags, pouches, blister-packs, or other suitable container forms known in the art. Such containers can be made of plastic, glass, laminated paper, metal foil, or other materials suitable for holding medicaments.

In some embodiments, the one or more anti-cancer agents comprise an inhibitor of PRMTS, an inhibitor of Bromodomain and BET, a HDI, a FGFR inhibitor, Apatinib, Lenvatinib, a retinoic acid, or a combination thereof.

If desired, the composition(s) are provided together with instructions for administering the composition(s) to a subject having or at risk of developing an ACC tumor. The instructions will generally include information about the use of the composition for the treatment or prevention of an ACC tumor. In other embodiments, the instructions include at least one of the following: description of the therapeutic agent; dosage schedule and administration for treatment or prevention of an ACC tumor or symptoms thereof; precautions; warnings; indications; counter-indications; overdosage information; adverse reactions; animal pharmacology; clinical studies; and/or references. The instructions may be printed directly on the container (when present), or as a label applied to the container, or as a separate sheet, pamphlet, card, or folder supplied in or with the container.

In another embodiment, the present invention further provides a kit for identifying a candidate subject for treatment with a first composition comprising one or more compounds represented by the structure of Formula (III), (IV), (1), (2) or (22), as described herein, and, optionally, a second composition comprising one or more anti-cancer agents, and further comprising an evaluator of Notch gene function. In another embodiment, other methods of evaluating the quantity of downstream Notch protein RNA may be utilized, as are well known in the art. In another embodiment, the evaluator comprises a DNA sequencing method, as are known in the art. In one embodiment, instructions for use are included in the kit.

In another embodiment, the present invention further provides a kit for treating ACC in a subject comprising a) an evaluator of Notch gene function b) a first composition comprising one or more compounds represented by the structure of Formula (III), (IV), (1), (2) or (22), as described herein, and c) a second composition comprising one or more anti-cancer agents. In one embodiment, the evaluator comprises RNA-seq or another RNA sequencing tool to reveal the presence and quantity of RNA in a biological sample at a given moment. In another embodiment, other methods of evaluating the quantity of downstream Notch protein RNA may be utilized, as are well known in the art. In another embodiment, the evaluator comprises a DNA sequencing method, as are known in the art. In one embodiment, instructions for use are included in the kit.

While certain features of the invention have been illustrated and described herein, many modifications, substitutions, changes, and equivalents will now occur to those of ordinary skill in the art. It is, therefore, to be understood that the appended claims are intended to cover all such modifications and changes as fall within the true spirit of the invention.

It should be understood that the disclosure presented herein is not limited to the particular methodologies, protocols and reagents, and examples described herein. The terminology and examples used herein is for the purpose of describing particular embodiments only, for the intent and purpose of providing guidance to the skilled artisan, and is not intended to limit the scope of the disclosure presented herein.

EXAMPLES

Example 1

A Phase 2 Trial of the Notch Inhibitor Compound (1) in Adenoid Cystic Carcinoma with Notch-Activating Mutations

Study Design

A Phase 2, Simon 2-Stage optimal design, non-comparative, open-label, single-arm, multicenter study of Compound (1) was conducted in subjects with recurrent or metastatic (RIM) ACC (bone-exclusive disease allowed) who harbor Notchl, Notch2, Notch3, or Notch4 activating mutations (Notch1-4′ nn. Subjects with disease progression ≤6 months of enrollment or newly diagnosed metastatic disease were allowed.

Subjects with known activating Notch mutations, per NGS test results gave their informed consent and underwent screening assessments to determine study eligibility over a 28-day screening period. Available mutation status from prior tests with any commercially available or locally developed NGS assay were acceptable. Any newly characterized mutation (such as tandem duplication, variant allele frequency etc.), was evaluated with the sponsor on a case-by-case basis.

Starting on Cycle 1, Day 1, eligible subjects enrolled in the study received Compound (1), 4 mg intravenously (IV) weekly (qwk), on Days 1, 8, 15, and 22 of each 28-day cycle until disease progression, unacceptable toxicity, or consent withdrawal. Paired tumor biopsies were collected at screening (fresh or archival within 5 years) and upon confirmation of disease progression (provided medically safe and not contraindicated). Samples were sent to a central vendor for NGS analysis. Formalin-fixed paraffin embedded (FFPE) slides were evaluated by IHC for NICDI stain.

During the treatment period, subjects underwent radiographic assessments every 8 weeks (±3 days) for review by Independent Central Review (ICR) as well as by the Investigator. Other assessments performed included safety exploratory biomarkers.

All subjects underwent end of study (EOS) visit 30 days post last treatment and were contacted by phone every 3 months thereafter to determine survival status; only in subjects who discontinued study treatment due to toxicity, radiographic imaging was done every 3 months until disease progression or until the subject initiated another anti-cancer therapy.

Investigational Product Route and Dosage Form

Compound (1) is a potent and selective inhibitor of gamma secretase-mediated Notch signaling. Compound (1) was administered IV at the dose of 4 mg every 7 days (1 day; QW) over 28-day cycles until disease progression, unacceptable toxicity, or consent withdrawal. Compound (1) injection was developed as a single-use sterile solution (1.2 mg/mL; 4 mg) for IV administration in clinical studies; each vial contained 5 mL (equivalent of 6 mg per vial). It was formulated as a sterile concentrate containing Cremophor and ethanol and was diluted with 0.9% Sodium Chloride injection, USP (normal saline) or 5% Dextrose Injection, USP (D5W) to concentrations between 0.01 mg/mL and 0.06 mg/mL. In order to reduce the risk of infusion reactions caused by Cremophor, premedication with H1- and H2-blockers (diphenhydramine and ranitidine or equivalents) or dexamethasone (8-10 mg) were administered.

Results

Notch pathway alterations are present in 11% to 29% of ACC subjects, as determined by whole exome sequencing of ACC samples using commercially available genetic tests such as FoundationOne. Notchl-activating mutations define a distinct disease phenotype characterized by solid histologic subtype (Table 1), liver and bone metastasis, poor prognosis, and potential responsiveness to Notchl inhibitors.

TABLE 1
Distinct histologic subtype characterized by ACC samples having
Notch1 activating mutations.
Histologic subtype
Tubular	7	7
Cribriform	35	34
Solid	36	35
Unknown	24	24

Subjects selected for a global open-label, multicenter study with ACC and Notch mutations had disease progression or were newly diagnosed with metastatic disease (FIG. 1). Based on the safety and activity found in the initial once weekly cohort treated intravenously with 4 mg of Compound (1), the study was amended to add a cohort of 42 additional subjects treated intravenously with 6 mg of Compound (1) once weekly. The primary endpoint is objective response rate (ORR) by investigator. As of Jul. 30, 2020, 45 subjects had been treated in the 4 mg cohort and these were evaluable for safety analysis. Of these 45 subjects, 40 had scans available at week 8 (Table 2), and the scans were evaluable for efficacy assessment. Sixty percent of subjects had prior chemotherapy, and 95% prior radiotherapy (Table 2). Lung and bone were the most common sites of recurrence (Table 2).

TABLE 2
Characteristics of subjects enrolled in the Phase 2 study.
Cohort 1
Subject Disposition
Subjects enrolled and treated, n 45
Subjects with scans at week 8, n 40
Baseline Characteristics (N = 45)
Median age, years (range)        50 (25-79)
Male/female, %                   44/56
Prior chemotherapy treatment, %  60
Prior radiation therapy, %       93
Metastatic disease, %b           91
Locally recurrent disease, %b    27
Treatment naïve and metastatic, %b 9
Most common sites of recurrence, %
Lung                             44
Bone                             27
Liver                            18

There were six subjects with partial response and 21 with stable disease (FIG. 2), which were evaluated per RECIST v1.1 or modified MDA Bone Response Criteria, by Investigator, contributing to a 68% disease control rate and a 15% overall response rate (Table 3).

TABLE 3
Best Overall Response.
Best overall response
(unconfirmed) % (n)
DCR (PR + SD) 68% (27)
PR            15% (6)
SD            53% (21)
PD            30% (12)
Missing/NE    3% (1)

Most partial responses (5 out of 6) were achieved by week 16, and 40% of the subjects (16 out of 40) participated in the study for at least 24 weeks or are still in the study not yet having reached 24 weeks (FIG. 3).

Radiographic scans at baseline and at the beginning of Cycle 3 (or Week 8) from 4 subjects who achieved partial response show tumor shrinkage after Compound (1) treatment (arrows, FIGS. 4A-4D).

Compound (1) was generally well tolerated, with most adverse events having mild to moderate in severity (Table 4). All treated subjects experienced treatment-related adverse events. Diarrhea, fatigue, nausea, and hypophosphatemia were the most common treatment-related adverse events that occurred in at least 30% of the subjects. Nine subjects (20%) experienced treatment-related adverse events of Grade 3/4. Diarrhea, fatigue, and hypophosphatemia were the most common treatment-related adverse events of Grade 3/4 that occurred in at least 4% of the subjects. Treatment-related diarrhea was common (60%), consistent with reports of Notch pathway inhibition (Purow B. Adv Exp Med Biol. 2012;727:305-319, incorporated by reference herein in its entirety); but most cases of diarrhea (25/27) were Grade 1/2 and manageable with protocol guidelines. There was one subject with a Grade 4 treatment-related adverse event of hyponatremia, and one subject who died due to treatment-related pneumonia. There were four on-study nonrelated deaths: one from aspiration pneumonia, one due to intracranial hemorrhage, one due to bone marrow infiltration, and one due to cardio-respiratory arrest.

TABLE 4
Treatment-Related AEs (TRAEs)
		Safety Population (N = 45)a
		Any Grade, n (%)	Grade 3/4, n (%)
	Any TRAE	45 (100)	9 (20)
	Diarrhea	27 (60)	2 (4)
	Fatigue	23 (51)	2 (4)
	Nausea	22 (49)	1 (2)
	Hypophosphatemia	19 (42)	2 (4)
	Cough	12 (27)	0
	Vomiting	12 (27)	0
	Epistaxis	9 (20)	0
	Rash maculo-papular	8 (18)	0
	Decreased appetite	7 (16)	1 (2)
	Dysgeusia	7 (16)	0

At the 4 mg dose, the PK of Compound (1) plasma concentration was equivalent to the PK from the Phase 1 study (FIGS. 5A and 5B; El-Khoueiry A B, et al. J Clin Oncol. 2018; 36(Suppl 15):Abstract 2515, incorporated herein by reference in its entirety). There was no significant effect of inhibitors or substrates of different CYPs on the PK in subjects treated with Compound (1) (FIG. 6).

The results from the Phase 2 trial indicate that Compound (1) at the 4 mg once weekly dose has clinical activity in subjects with recurrent or metastatic adenoid cystic carcinoma with Notch activating mutations, with a disease control rate of 68%. Compound (1) also appears to be well tolerated. Treatment-related adverse events were primarily of Grade 1/2 severity, and the most common, overall, were diarrhea, fatigue, nausea, and hypophosphatemia. One subject had a Grade 4 treatment-related adverse event of hyponatremia, and one subject died due to treatment-related pneumonia. The PK of Compound (1) was equivalent to the PK from the Phase 1 study. There was no significant effect of CYP inhibitors or substrates on Compound (1) exposure.

Example 2

Compound (1) & Compound (22) are Potent Notch Inhibitors

Compound (1) (6 mg/kg QDx3 per week, Days 15-17; 22-24; 29-31) inhibited the increase in tumor volume compared to both vehicle-treated and Nirogacestat-treated (150 mg/kg, QD Days 15-28) mice (FIG. 7A). Similarly, Compound (1) (4 mg/kg QDx3 per week, Days 18-33) inhibited the increase in tumor volume compared to both vehicle-treated and Crenigacestat-treated (6 mg/kg, QD Days 18-33) mice (FIG. 7B). The IC50 of Compound (1) and Compound (22) was significantly lower for each of the Notch subtypes compared to Nirogacestat2 (PF-03084014); RO-49290973; and MK-07524 (Table 5).

Notch is a tumorigenic driver in ACC and Correlates with distinct pattern of metastases and poor prognosis. Subjects with Notchl mutant ACC had much lower relapse-free survival compared to subjects with Notchl wild-type ACC (FIG. 8).

TABLE 5
Inhibition of Constitutive Notch Signaling: IC50 (nM)1
			Nirogacestat
	Compound (1)	Compound (22)	(PF-03084014)	RO-4929097	MK-0752
Notch1	1.6	6.1	13	3.8	354
Notch2	0.7	2.9	15	4.4	403
Notch3	3.4	8.1	17	22	955
Notch4	2.9	4.4	16	12	874
indicates data missing or illegible when filed

Example 3

Compound (1) Blocks NOTCH Signaling and Inhibits Cell Viability in ACC Cell Lines

Goal: To evaluate the ability of Compound (1) to inhibit ACC in-vitro.

Methods: The naturally immortalized sublingual gland derived Human ACC cell line ACC83 and the Human HPV-transformed submaxillary gland derived cell line ACC112 were treated with Compound (1) at 10 nM concentration or DMSO (control) for 14 days. ACC83 cells were cultured in RPMI 1640 medium supplemented with 10% FBS, 10,000 u/ml penicillin-streptomycin and 1 ml L-glutamine. ACC112 cell line was additionally supplemented with 20 ng/ml epidermal growth factor, 400 ng/ml hydrocortisone and 5 μg/ml insulin. Cell viability relative to day 0 was determined using an Alamar Blue assay on days 7, 11 and 14. Cell lines were stained with NICD1 (Cell Signaling, 4147S, 1:200), HES1 (Abcam, ab71559, 1:400), HEY1 (Millipore, AB5714, 1:200), and HESS (Novus Biologicals, NBP241305, 1:200) antibodies using iView DAB detection and the Ventana BenchMark XT staining system (Roche). Area and intensity of diaminobenzidine (DAB) signal was quantified using IHC Profiler color deconvolution plugin within ImageJ software.

Results: Sequencing of the cell lines did not reveal potential gain-of-function mutations in NOTCH genes, both cell lines express high level of nuclear NICD1, reflecting active NOTCH signaling.

Compound (1) potently inhibited cell growth of both ACC83 and ACC112 cells (FIG. 10A). Consistent with effective targeting of y-secretase, this effect was associated with a reduction in NICD1, as confirmed by Western blotting and IHC analyses (FIG. 10B and 10C). Furthermore, cells treated with Compound (1) displayed substantially downregulated expression levels of multiple NOTCH downstream targets, such as HES1, HESS and HEY1 (FIG. 10C), confirming that NOTCH signaling was functionally inhibited.

Conclusion: Treatment with 10nM Compound (1) induced substantial anti-carcinogenic effects, which was paralleled by significant inhibition of NOTCH signaling in both cell lines tested, suggesting that Compound (1) imposes therapeutic effect on ACC tumors driven by activated

NOTCH pathway even in the absence of a known NOTCH₁ activating mutation.

Example 4

Notch Inhibition by Compound (1) Decreases Migration and Invasion In Vitro

Goal: To evaluate the effect of NOTCH blockade by nanomolar concentration of Compound (1) on the oncogenic properties of ACC83 and ACC112 cells.

Methods: A wound healing assay was carried out to assess migration potential of ACC83 and ACC112 cells. Cells were cultured in triplicate in 6-well plates (1×10⁶ cells per well) containing culture inserts (Ibidi). On reaching 90% confluence, the inserts were removed, and cells were cultured for 12 hr. Gap area in individual wells was determined using ImageJ. The gap area percentage was calculated as the gap area at 12 hr relative to the gap area at 0 hr. A Boyden chamber assay was carried out to assess the invasion potential of ACC83 and ACC112 cells. Cells were cultured (1×10⁴ cells per well) in triplicate into the upper chamber of Matrigel-coated transwell chambers (8-μm pore size, Corning) in serum-free medium, while 10% FBS medium was added to the bottom chamber to stimulate invasion. After 24 h incubation, the cells in the upper chamber were carefully removed with cotton swab, and the cells that had invaded through Matrigel were stained with 1DiffQuick, photographed at 40× magnification and quantified across three random fields.

Results: Treatment with Compound (1) significantly inhibited the migration of both cell lines compared to the untreated cells grown in parallel (FIG. 11A and 11B). Treatment with Compound (1) also substantially decreased the invasion of ACC83 cells (FIG. 11C).

Conclusion: Treatment with 10 nM Compound (1) affected substantial oncogenic properties of ACC83 and ACC112 cells.

Example 5

Compound (1) Monotherapy-Induced Tumor Growth Inhibition is Associated with Decrease in NOTCH-Mediated Tumorigenic Signaling

Goal: Evaluate the effect of Compound (1) monotherapy on Notch-related genes.

Methods: The ACC PDX models ACCx11, ACCx9 and ACCx5M1, a model without activating NOTCH aberration, were administered either vehicle or Compound (1) at 7.5 mg/kg orally, qdx4. For reverse transcription and real-time PCR, RNA was reverse transcribed to cDNA using Superscript III (Invitrogen) and then used as a template for real-time PCR. Gene amplification was carried out on a 7500 Fast Real Time PCR System using TaqMan Gene Expression Assays (Applied Biosystems). All reactions were performed in triplicate and relative quantity was calculated after normalizing to GAPDH expression by the 2-AAcT method.

RNA sequencing was performed on an Illumina NovaSeq-6000 instrument at the Genetic Resources Core Facility, John Hopkins University, using 101bp paired-end reads. Raw sequencing reads (fastq files) were processed using FastQC (https://www.bioinformatics.babraham.ac.uk/projects/fastqc) and adapters were trimmed with cutadapt (Martin, M. Cutadapt removes adapter sequences from high-throughput sequencing reads. 2011 17, 3, doi:10.14806/ej.17.1.200 (2011)). Mouse reads were filtered out using an approach described by Callari et al. (Computational approach to discriminate human and mouse sequences in subject-derived tumour xenografts. BMC Genomics 19, 19, doi:10.1186/s12864-017-4414-y (2018)). Human reads were retained for downstream analysis. Human reads were aligned to the human reference genome (GRCh37/hg19) using STAR and STAR-fusion (Dobin, A. et al. STAR: ultrafast universal RNA-seq aligner. Bioinformatics 29, 15-21, doi:10.1093/bioinformatics/bts635 (2012); Haas, B. J. et al. Accuracy assessment of fusion transcript detection via read-mapping and de novo fusion transcript assembly-based methods. Genome Biology 20, 213, doi:10.1186/s13059-019-1842-9 (2019)). Gene expression levels were calculated using featureCounts (Liao, Y., Smyth, G. K. & Shi, W. featureCounts: an efficient general-purpose program for assigning sequence reads to genomic features. Bioinformatics 30, 923-930, doi:10.1093/bioinformatics/btt656 (2013)). Next, gene expression levels were normalized using DESeq2 (Love, M. I., Huber, W. & Anders, S. Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2. Genome Biology 15, 550, doi:10.1186/s13059-014-0550-8 (2014)). Deferentially expressed (DE) genes were detected using DESeq2 according to the following parameters: (i) Average gene expression>50 normalized reads, (ii) Log2 (fold-change)>1 or Log2(fold-change)<−1, (iii) FDR<0.05. Notch-related genes were collected from: (1) PathwaysCommons: The gene-gene interaction table was downloaded from PathwaysCommons, filtered-out and only cases where NOTCH genes regulate the expression of the second gene, were retained (interaction type: “controls-expression-of”). (2) KEGG (Kanehisa, M., Furumichi, M., Tanabe, M., Sato, Y. & Morishima, K. KEGG: new perspectives on genomes, pathways, diseases and drugs. Nucleic Acids Research 45, D353-D361, doi:10.1093/nar/gkw1092 (2016)), (3) PID (Schaefer, C. F. et al. PID: the Pathway Interaction Database. Nucleic Acids Research 37, D674-D679, doi:10.1093/nar/gkn653 (2008)) and (4) MSigDB (https://www.gsea-msigdb.org/gsea/msigdb/collections.jsp). An additional 21 direct NOTCH target genes were curated from literature.

Results: RNA-Sequencing analysis revealed that expression of 11 previously characterized NOTCH target genes was higher in vehicle treated ACCx11 tumors compared to vehicle treated ACCx5M1 tumors (FIG. 9A). Compound (1) treatment significantly reduced the expression levels of 9 of these genes in ACCx11 tumors, whereas only 4 of 11 genes were significantly reduced relative to the untreated controls in ACCx5M1 tumors (data not shown). These results were validated by RT-PCR analysis of 5 selected Notch-related genes (FIG. 9B).

Example 6

Tolerability of Compound (1) Monotherapy and Combination Therapy In Naïve Mice

Goal: To evaluate the tolerability of Compound (1) monotherapy and combination (combo) therapies in naïve mice.

Methods: Intravenous and oral administration of Compound (1) at minimum effective dose (1 mg/kg) was first examined to determine preferred mode of administration and plasma total free active drug concentration was measured.

Naïve mice were randomly divided into 17 groups (n=5). Control group was administered vehicle once every day for four consecutive days (qdx4). Compound (1) was dosed at 3.0 mg/kg orally, qdx4, as a single agent or in combination with: ATRA (1, 2, or 3 mg/kg; orally; once every day for five consecutive days (qdx5)); Lenvatinib (10, 30, or 100 mg/kg; orally; qd); GSK3326595 (25, 50, or 100 mg/kg; orally; twice a day (bid)); or Apatinib (50, 100, or 200 mg/kg; orally; qd), (see dosing schedule in Table 6). Dosing was initiated on Day 0. Animal weight was measured every day for two weeks.

TABLE 6
Dosing Schedules
Group #	Treatment	Dosing Schedule
1	Vehicle	PO, qdx4
2	Compound (1)	3.0 mg/kg PO, qdx4
3	Compound (1) + ATRA	Compound (1): 3 mg/kg, PO, qdx4
		ATRA: 1 mg/kg, PO, qdx5
4	Compound (1) + ATRA	Compound (1): 3 mg/kg, PO, qdx4
		ATRA: 2 mg/kg, PO, qdx5
5	Compound (1) + ATRA	Compound (1): 3 mg/kg, PO, qdx4
		ATRA: 3 mg/kg, PO, qdx5
6	Compound (1) + Lenvatinib	Compound (1): 3 mg/kg, PO, qdx4
		Lenvatinib: 10 mg/kg, PO, qd
7	Compound (1) + Lenvatinib	Compound (1): 3 mg/kg, PO, qdx4
		Lenvatinib: 30 mg/kg, PO, qd
8	Compound (1) + Lenvatinib	Compound (1): 3 mg/kg, PO, qdx4
		Lenvatinib: 100 mg/kg, PO, qd
9	Compound (1) + GSK3326595	Compound (1): 3 mg/kg, PO, qdx4
		GSK3326595: 25 mg/kg, PO, bid
10	Compound (1) + GSK3326595	Compound (1): 3 mg/kg, PO, qdx4
		GSK3326595: 50 mg/kg, PO, bid
11	Compound (1) + GSK3326595	Compound (1): 3 mg/kg, PO, qdx4
		GSK3326595: 100 mg/kg, PO, bid
12	Compound (1) + Apatinib	Compound (1): 3 mg/kg, PO, qdx4
		Apatinib: 50 mg/kg, PO, qd
13	Compound (1) + Apatinib	Compound (1): 3 mg/kg, PO, qdx4
		Apatinib: 100 mg/kg, PO, qd
14	Compound (1) + Apatinib	Compound (1): 3 mg/kg, PO, qdx4
		Apatinib: 200 mg/kg, PO, qd
15	Compound (1) + Erdafitinib	Compound (1): 3 mg/kg, PO, qdx4
		Edrafitinib: 25 mg/kg, PO, qd
16	Compound (1) + Palbociclib	Compound (1): 3 mg/kg, qdx4, PO
		Palbociclib: 60 mg/kg, qd, PO
PO = orally;
qd = once a day;
qwk = once a week;
bid = twice a week;
qdx4 = 4 days on/3 days off;
qdx5 = 5 days on/2 days off;

Results: Intravenous and oral administration of Compound (1) at minimum effective dose (1 mg/kg) showed very similar pharmacokinetic profile in tumor-free mice (data not shown). Therefore, the oral route of administration was used in all in vivo experiments.

Compound (1) monotherapy showed a similar % weight change relative to day 0 to that seen in mice administered with Vehicle (data not shown). Combination therapy with GSK3326595 and Compound (1) showed the highest % weight loss relative to day 0 (data not shown).

Conclusion: Compound (1) shows good tolerability as monotherapy and in combination therapies.

Example 7

Tolerability and Antitumor Activity of Compound (1) Monotherapy and Combination Therapy in ACCx11 PDX Models

Goal: To evaluate the antitumor activity of Compound (1) monotherapy with combination therapy in an ACCx11 PDX model.

Methods: The ACC PDX model was evaluated using the same method described in Example 6. Mice were implanted with tumor fragments and allocated to treatment groups when the average tumor volume reached —150mm3. For each drug combination, ACCx11 mice were randomly divided into control group (n=10) and 3 treatment groups (n=5). Control group was administered vehicle once every day for four consecutive days (qdx4). Compound (1) was dosed at 3.0 mg/kg orally, qdx4, as a single agent or in combination with: ATRA dosed at 3 mg/kg, orally, once every day for five consecutive days (qdx5)); Lenvatinib dosed at 100 mg/kg, orally, qd; GSK3326595 dosed at 50 mg/kg, orally, twice a day (bid); Apatinib dosed at 200 mg/kg, orally, qd. Dosing was initiated on Day 0. Tumor volume and animal weight were collected twice a week.

Results: Compound (1) was more effective than vehicle at inhibiting tumor growth in mice harbouring ACCx11 mutant tumor (FIG. 12A). Combination treatment with Compound (1) and Apatinib, ATRA, and Lenvatinib inhibited tumor growth in mice harbouring ACCx11 tumors compared to Compound (1) alone (FIG. 12A).

Although a long-term 3.0 mg/kg Compound (1) dosing schedule was tolerated in the tumor-bearing animals with weight loss of <10% (FIG. 12B), a decrease in body weight occurred in three Lenvatinib treated mice and in one GSK3326595 treated mouse. Therefore, these mice were put on a dosing holiday until the weights recovered.

Conclusion: In the ACCx11 model, treatment with combination therapies significantly inhibited tumor volume compared to administration of Compound (1) alone.

Example 8

Antitumor Activity of Compound (1) Combination Therapies in ACC PDX Models

Methods: Mice were implanted with tumor fragments and allocated to treatment groups when the average tumor volume reached —150mm3. For each drug combination, ACC PDX mice were randomly divided into control group (n=10) and 3 treatment groups (n=5). Control group was administered vehicle once every day for four consecutive days (qdx4). Compound (1) was dosed at 3.0 mg/kg orally, qdx4, as a single agent or in combination with Erdafitinib dosed at 25 mg/kg, orally, once every day (FIG. 13) or Palboclicib dosed at 50 or 60 mg/kg, qd, PO. Dosing was initiated on Day 0. Tumor volume and animal weight were collected twice a week.

Results: Combination treatment with Compound (1) and Erdafitinib (FIGS. 13A-13C) or Palboclicib (FIGS. 14A-14C) inhibited tumor growth in mice harbouring ACC tumors, regardless of the Notch status (e.g., Notch-mutated, Notch WT) compared to Compound (1) alone.

Conclusion: In ACC PDX models, treatment with combination therapies significantly inhibited tumor volume compared to administration of Compound (1) alone. Combination treatment with Compound (1) and Erdafitinib or Palboclicib were effective in both Notch WT and Notch mutated ACC models.

Claims

1. A method of treating or suppressing an Adenoid Cystic Carcinoma (ACC) tumor in a subject or inhibiting tumor growth in a subject having an ACC tumor, comprising the step of administering to said subject a first composition comprising one or more compounds represented by the structure of Formula (III):

2. (canceled)

3. The method of claim 1, wherein: R1 is —CH2CF3 or —CH2CH2CF3; andR2 is —CH2CF3 or —CH2CH2CF3.

4. The method of claim 1, wherein: y is zero or 1.

5. The method of claim 1, wherein: R1 is —CH2CH2CF3; andR2 is —CH2CH2CF3.

6. The method of claim 1, wherein: y is zero.

7. The method of claim 1, wherein said compound of Formula (III) comprises: (2R,3S)—N-((3S)-1-Methyl-2-oxo-5-phenyl-2,3-dihydro-1H-1,4-benzodiazepin-3-yl)-2,3-bis(3,3,3-trifluoropropyl)succinamide (1); (2R,3S)—N-((3S)-2-0xo-5-phenyl-2,3-dihydro-1H-1,4-benzodiazepin-3-yl)-2,3-bis(3,3,3-trifluoropropyl)succinamide (2); (2R,3S)—N-((3S)-1-Methyl-2-oxo-5-phenyl-2,3-dihydro-1H-1,4-benzodiazepin-3-yl)-2-(2,2,2-trifluoroethyl)-3-(3,3,3-trifluoropropyl)succinamide (3); (2R,3S)—N-((3S)-1-Methyl-2-oxo-5-phenyl-2,3-dihydro-1H-1,4-benzodiazepin-3-yl)-3-(2,2,2-trifluoroethyl)-2-(3,3,3-trifluoropropyl)succinamide (4); (2R,3S)—N-((3S)-1-(2H3)Methyl-2-oxo-5-phenyl-2,3-dihydro-1H-1,4-benzodiazepin-3-yl)-2,3-bis(3,3,3-trifluoropropyl)succinamide (5); (2R,3S)—N-((3S)-7-chloro-1-methyl-2-oxo-5-phenyl-2,3-dihydro-1H-1,4-benzodiazepin-3-yl)-2,3-bis(3,3,3-trifluoropropyl)succinamide (6); (2R,3S)—N-((3S)-8-methoxy-1-methyl-2-oxo-5-phenyl-2,3-dihydro-1H-1,4-benzodiazepin-3-yl)-2,3-bis(3,3,3-trifluoropropyl)succinamide (7); (2R,3S)—N-((3S)-8-fluoro-1-methyl-2-oxo-5-phenyl-2,3-dihydro-1H-1,4-benzodiazepin-3-yl)-2,3-bis(3,3,3-trifluoropropyl)succinamide (8); (2R,3S)—N-((3S)-7-methoxy-1-methyl-2-oxo-5-phenyl-2,3-dihydro-1H-1,4-benzodiazepin-3-yl)-2,3-bis(3,3,3-trifluoropropyl)succinamide (9); (2R,3S)—N-((3S)-7-fluoro-1-methyl-2-oxo-5-phenyl-2,3-dihydro-1H-1,4-benzodiazepin-3-yl)-2,3-bis(3,3,3-trifluoropropyl)succinamide (10); (2R,3S)—N-((3S)-8-chloro-1-methyl-2-oxo-5-phenyl-2,3-dihydro-1H-1,4-benzodiazepin-3-yl)-2,3-bis(3,3,3-trifluoropropyl)succinamide (11); (2R,3S)—N-((3S)-9-methoxy-2-oxo-5-phenyl-2,3-dihydro-1H-1,4-benzodiazepin-3-yl)-2,3-bis(3,3,3-trifluoropropyl)succinamide (12); (2R,3S)—N-((3S)-8-methoxy-2-oxo-5-phenyl-2,3-dihydro-1H-1,4-benzodiazepin-3-yl)-2,3-bis(3,3,3-trifluoropropyl)succinamide (13);(2R,3S)—N-((3S)-7-methoxy-2-oxo-5-phenyl-2,3-dihydro-1H-1,4-benzodiazepin-3-yl)-2,3-bis(3,3,3-trifluoropropyl)succinamide (14); (2R,3S)—N-((3S)-8-cyano-9-methoxy-2-oxo-5-phenyl-2,3-dihydro-1H-1,4-benzodiazepin-3-yl)-2,3-bis(3,3,3-trifluoropropyl)succinamide (15); (2R,3S)—N-((3S)-8,9-dichloro-2-oxo-5-phenyl-2,3-dihydro-1H-1,4-benzodiazepin-3-yl)-2,3-bis(3,3,3-trifluoropropyl)succinamide (16);(2R,3S)—N-((3S)-9-fluoro-2-oxo-5-phenyl-2,3-dihydro-1H-1,4-benzodiazepin-3-yl)-2,3-bis(3,3,3-trifluoropropyl)succinamide (17); (2R,3S)—N-((3S)-9-chloro-2-oxo-5-phenyl-2,3-dihydro-1H-1,4-benzodiazepin-3-yl)-2,3-bis(3,3,3-trifluoropropyl)succinamide (18); (2R,3S)—N-((3S)-2-oxo-5-phenyl-2,3-dihydro-1H-1,4-benzodiazepin-3-yl)-3-(4,4,4-trifluorobutyl)-2-(3,3,3-trifluoropropyl)succinamide (19); (2R,3S)—N-((3S)-8-Methoxy-2-oxo-5-phenyl-2,3-dihydro-1H-1,4-benzodiazepin-3-yl)-3-(4,4,4-trifluorobutyl)-2-(3,3,3-trifluoropropyl)succinamide (20);or (2R,3S)—N-((3S)-9-((2-Methoxyethyl)amino)-2-oxo-5-phenyl-2,3-dihydro-1H-1,4-benzodiazepin-3-yl)-2,3-bis(3,3,3-trifluoropropyl)succinamide (21).

8. The method of claim 1, wherein said compound of Formula (III) comprises:

9. The method of claim 1, wherein said compound of Formula (III) comprises:

10. The method of claim 1, wherein said PRMT5 inhibitor comprises GSK3326595.

11. The method of claim 1, wherein said retinoic acid comprises all-trans retinoic acid (ATRA).

12. The method of claim 1, wherein said FGFR inhibitor comprises erdafitinib, pemigatinib, infigratinib, or a combination thereof.

13. (canceled)

14. (canceled)

15. The method of claim 1, wherein said first composition is administered at a dose of 0.3, 0.6, 1.2, 2.4, 4, 6, or 8.4 mg.

16. The method of claim 1, wherein said first composition is administered once per week or once every two weeks.

17. (canceled)

18. The method of claim 1, wherein said first composition or said second composition is intravenously or orally administered to said subject.

19. (canceled)

20. The method of claim 1, wherein said first composition and said second composition are administered together.

21. The method of claim 1, wherein said first composition and said second composition are administered at separate sites or at separate times.

22. The method of claim 1, wherein said ACC tumor comprises tubular ACC, cribriform ACC, or solid ACC.

23. The method of claim 1, wherein said ACC tumor comprises recurrent or metastatic ACC.

24. (canceled)

25. The method of claim 1, wherein said ACC tumor is Notch mutated or Notch Wild Type (WT).

26. A composition comprising one or more compounds represented by the structure of Formula (I):