Patent Application
20140051603
There is a growing appreciation that posttranslational modifications, such as protein glycosylation, dramatically increase polypeptide complexity and function (Rudd et al., 2001 Science 291:2370-2376; Varki, 1993 Glycobiology 3:97-130; Dwek, 1996 Chem. Rev. 96:683-720; Roth, 2002 Chem. Rev. 102:285-303; Ritchie et al., 2002 Chem. Rev. 102:305-319; Zachara and Hart, 2002 Chem. Rev. 102:431-438; Bertozzi and Kiessling, 2001 Science 291:2357-2364; Kleene and Schachner, 2004 Nat. Rev. Neurosci. 5:195-208; Bucior and Burger, 2004 Curr. Op. Struct. Biol. 14:631-637; Schmidt et al., 2003 Trends Microbiol. 11:554-561). For example, almost all cell surface and secreted proteins are modified by covalently-linked carbohydrate moieties and the glycan structures on these glycoproteins have been implicated as essential mediators in processes such as protein folding, cell signaling, cell migration, fertilization, embryogenesis, neuronal development, hormone activity, and the proliferation of cells and their organization into specific tissues (Taylor and Drickamer, 2007 Curr. Opin. Cell. Biol. 19:572-577). In addition, overwhelming data supports the relevance of glycosylation in pathogen recognition, inflammation, innate immune responses, and the development of autoimmune diseases and cancer (Ohtsubo and Marth, 2006 Cell 126:855-867; Brockhausen, 2006 EMBO Rep. 7:599-604; Brown et al., 2007 Crit. Rev. Biochem. Mol. Biol. 42:481-515; Crocker et al., 2007 Nat. Rev. Immunol. 7:255-266; van Kooyk and Rabinovich, 2008 Nat. Immunol. 9:593-601). The importance of protein glycosylation is also underscored by the developmental abnormalities observed in a growing number of human disorders (known as Congenital Disorders of Glycosylation or CDGs), caused by defects in the glycosylation machinery (Freeze, 2007 Curr. Mol. Med. 7:389-396).
Almost all naturally occurring protein glycosylations can be classified as either N-glycosides whereby N-acetyl glucosamine is linked to the amide side chain of an asparagine, or as O-glycosides whereby a saccharide is linked to the hydroxyl of serine, threonine or tyrosine (Buskas et al., 2006 Glycobiology 16:113R-136R). The biosynthesis of N-linked oligosaccharides occurs in the endoplasmic reticulum (ER) and Golgi complex. In the ER, a dolichol-linked Glc3Man9GlcNAc2 oligosaccharide precursor is biosynthesized and transferred en bloc to an Asn-X-Ser/Thr sequon on newly synthesized polypeptides through the action of the multi-subunit oligosaccharide transferase complex (Dempski and Imperiali, 2002 Curr. Opin. Chem. Biol. 6:844-850; Weerapana and Imperiali, 2006 Glycobiology 16:91R-101R). Subsequent trimming and processing of the transferred oligosaccharide results in a Man3GlcNAc2 core structure, which is transported to the medial stacks of the Golgi complex where maturation of the oligosaccharide gives rise to extreme structural diversity (Ellgaard and Helenius, 2003 Nat. Rev. Mol. Cell Biol. 4:181-191; Helenius and Aebi, 2004 Annu Rev. Biochem. 73:1019-1049; Helenius and Aebi, 2001 Science 291:2364-9; Mast and Moremen, 2006 Methods Enzymol. 415:31-46); (Essentials of Glycobiology. 2nd edition. Varki et al., ed., Cold Spring Harbor (NY): Cold Spring Harbor Laboratory Press; 2009). The complexity of N-glycan structures is largely based on the cell-specific expression of a collection of glycosyl transferases that specify the extension of oligosaccharide structures onto the trimmed Man3GlcNAc2 core structure. The switch from structural uniformity in the ER to diversification in the Golgi complex coincides with a marked change in glycan function. In the early secretory pathway, the glycans have a common role in the promotion of protein folding, quality control, and certain sorting events. This is in contrast to their roles in the Golgi complex, in which they are modified to perform a wide spectrum of functions displayed by the mature glycoproteins.
The first enzyme needed for the biosynthesis of complex N-linked glycans is GlcNAcT-I, which adds a β(1-2)GlcNAc moiety to the core mannoside to produce a hybrid structure (Schachter, 2000 Glycoconj. J. 17:465-483; Chen et al., 2002 Biochim. Biophys. Acta 1573:271-279). Further processing of the resulting saccharide by mannosidases creates the precursor for GlcNAcT-II, which catalyzes the conversion of a hybrid structure into the precursor for complex N-glycan biosynthesis. Thus, each of the GlcNAc moieties of the resulting compound is converted into a complex bi-antennary structure. The formation of multi-antennary structures, require additional GlcNAc moieties that are added by GlcNAcT-IV, V and VI. Each of the resulting GlcNAc moieties can be extended into a complex oligosaccharide that can be quite diverse in structure. Furthermore, GlcNAcT-III can add a bisecting moiety that cannot be extended by further monosaccharide moieties. Collectively, the GlcNAcT's can create N-glycans that have as many as five branches (Schachter, 2000 Glycoconj. J. 17:465-483; Chen et al., 2002 Biochim. Biophys. Acta 1573:271-279). Finally, further diversification can take place by the addition of a core α(1-6)-fucoside to the GlcNAc moiety linked to the side chain of Asn. It is important to note that the action of one glycosyl transferase can preclude the action of another one and therefore only a subset of linkages performed by the GlcNAc transferases can occur on any one N-glycan. For example, GlcNAcT-V requires the prior activation by GlcNAcT-II. GlcNAcT-III and V are mutually exclusive as the action of one may inhibit the action of the other. The mode of GlcNAcT-VI is not well understood but may require prior branching by GlcNAcT-II and GlcNAcT-V.
The present invention provides chemical and chemo-enzymatic methods for the synthesis of a wide array of oligosaccharides. The chemical and chemo-enzymatic methods of the invention include a chemical synthesis phase, and an optional enzymatic synthesis phase.
In the chemical phase of the synthesis, an orthogonally protected oligosaccharide core is sequentially deprotected and linked with one, two, three, four, or five or more glycosyl donors resulting in an extended oligosaccharide which is a complex bi-, tri-, tetra- or penta-antennary glycan (collectively referred to herein as a “multi-antennary” glycan) having two, three, four or five branching arms, respectively. This resulting multi-antennary glycan, known herein as the “enzymatic precursor,” can be deprotected and/or unmasked in order to yield a final oligosaccharide product, or it can be partially or entirely deprotected and selectively extended enzymatically in an enzymatic phase to yield a final complex oligosaccharide product. The chemically synthesized multi-antennary glycan is termed an “enzymatic precursor” because it is the reactant upon which subsequent selective enzymatic extension is performed during the optional enzymatic phase of the synthesis.
In one aspect, the invention provides an orthogonally protected oligosaccharide core structure. In one embodiment, the oligosaccharide core structure is a branched trisaccharide, exemplified as formula (I). The branched trisaccharide is formed from three mannose units, (Man3), and is preferably α-D-mannopyranosyl-(1→6)-[α-D-mannopyranosyl-(1→3]-D-mannopyranose (or pyranoside), more preferably α-D-mannopyranosyl-(1→6)-[α-D-mannopyranosyl-(1→3]-β-D-mannopyranose (or pyranoside). A protected glucosamine moiety is optionally present at the C-4 position of the central or branching mannoside of the trimannoside.
A preferred orthogonally protected branched trisaccharide contains at least two orthogonal protecting groups, and has the formula (I):
wherein each of R1, R4, R6, and R8 is independently an orthogonal protecting group or a permanent protecting group; wherein the orthogonal protecting group is preferably selected from levulinoyl (Lev); 9-fluorenylmethoxycarbonyl (Fmoc); allyloxycarbonyl (Alloc); 2-naphthylmethyl (Nap) or 1-naphthylmethyl (1-Nap); benzoyl (Bz); difluorobenzoyl (dfBz); pivaloyl levulinoyl (PivLev); pivaloyl benzoyl (PivBz); para-methoxybenzyl ether (PMB); methoxy phenyl ether (MP); allyl ether (Allyl); chloroacetyl ester (ClAc); trichloroacetyl ester (Cl3Ac), trifluoroacetyl ester (F3Ac); and silyl ethers such as t-butyldimethyl silyl (TBS), t-butyldiphenyl silyl, 2-(trimethylsilyl)ethoxymethyl ether (SEM) and texyldimethyl silyl (TDS); and wherein the permanent protecting group is stable under conditions used to remove the orthogonal protecting groups and is preferably benzyl ether (Bn) or acetyl ester (Ac);
each of R2, R3, R5, R7, and R10 is independently a permanent protecting group that is stable under conditions used to remove the orthogonal protecting groups and is preferably benzyl ether (Bn) or acetyl ester (Ac);
R9 is an orthogonal protecting group; a permanent protecting group; or a saccharide, preferably a glucosamine including an N-acetyl glucosamine (GlcNAc) or a derivative thereof; wherein the glucosamine is preferably a protected and/or masked glucosamine derivative containing at least one permanent protecting group and/or at least one masking group;
X is —OR15 or —SR16;
R15 is H, alkyl, cycloalkyl, substituted alkyl or cycloalkyl, alkenyl, substituted alkenyl, alkynyl, substituted alkynyl, aryl or substituted aryl; a protecting group such as a silyl or substituted silyl, preferably thexyldimethylsilyl (TDS), t-butyldimethylsilyl (TBS), t-butyldiphenyl silyl (TBDPS), triisopropylsilyl (TIPS), trimethylsilyl (TMS), or triethylsilyl (TES); methyl (Me), acetyl (Ac), benzyl (Bn), 2-naphthylmethyl (Nap) or 1-naphthylmethyl (1-Nap); an anomeric spacer or linker; a fluorous tag; or an anomeric leaving group such as trichloroacetimidate —C(NH)—CCl3, phenyltrifluoroacetimidate —C(NPh)-CF3, trifluoroacetimidate —C(NH)—CF3; thioformimidate, thioalkyl, thiophenyl, or S-glycosyl N-phenyltrifluoroacetimidate; and
R16 is H, alkyl, cycloalkyl, substituted alkyl or cycloalkyl, alkenyl, substituted alkenyl, alkynyl, substituted alkynyl, aryl, or substituted aryl, preferably methyl, ethyl, phenyl, tosyl, or tolyl.
Protecting groups recited herein are intended to be exemplary and nonlimiting; additional protecting groups (temporary or permanent, orthogonal, masking, hydroxyl-functional, amino-functional, and the like) are well-known to the skilled artworker and can be employed in the chemical and chemo-enzymatic methods of the invention. See, e.g., Greene's Protective Groups in Organic Synthesis (Wuts and Greene (Eds.), Greene's Protective Groups in Organic Synthesis, Fourth Edition. John Wiley & Sons: Hoboken, N.J.; 2007).
Compound 110 is an exemplary orthogonally protected branched trisaccharide core:
In another embodiment, the oligosaccharide core further optionally contains one or two glycoside moieties linked to the reducing end of the branched trimannoside core structure to form a tetrasaccharide or a pentasaccharide, respectively. The one or two glycoside moieties linked to the reducing end of the trimannoside core structure are preferably protected or masked glucosamine moieties (GlcNR) such as GlcNAc or a derivative thereof. When a glucosamine, GlcNAc or a derivative thereof (e.g., a protected or masked form thereof) is present at the reducing end of the oligosaccharide core, it is optionally modified by a fucoside at position C-6.
A preferred orthogonally protected branched pentasaccharide contains at least two orthogonal protecting groups and has the formula (II):
wherein R1, R2, R3, R4, R5, R6, R7, R8, R9, R10, and X are as in formula (I);
each of R11, R12, and R13 is independently a permanent protecting group that is stable under conditions used to remove the orthogonal protecting groups and is preferably benzyl (Bn) or acetyl (Ac);
R14 is a permanent protecting group that is stable under conditions used to remove the orthogonal protecting groups and is preferably benzyl (Bn) or acetyl (Ac); or a protected fucoside moiety;
Y and Z are each independently —N3 or —NHR17; and
R17 is H or a protecting group preferably selected from the group consisting of 9-fluorenylmethoxycarbonyl (Fmoc), allyloxycarbonyl (Alloc), [2,2,2-Trichloroethoxycarbonyl] (Troc), trichloroacetyl (TCA), trifluoroacetyl (TFA), acetyl (Ac), phthalimido (Phth), carbobenzyloxy (Cbz) or tert-butoxycarbonyl (Boc).
Compound 1 is an exemplary orthogonally protected branched pentasaccharide core:
It should be understood that the invention further includes a tetrasaccharide, as in formula (II), which has “X” at the anomeric center in place of the second glucosamine at the reducing end.
Silyl or substituted silyl groups that are O-linked at the anomeric carbon to form silyl ethers are preferably cleavable with HF/pyridine and tetrahydrofuran (THF) or tetrabutylammonium fluoride (TBAF)/acetic acid/THF or moderately strong acetic conditions. Silyl or substituted silyl groups function as temporary protecting groups when O-linked at the anomeric carbon of the disaccharide and higher order saccharides of the invention.
Alkyl, alkenyl and alkynyl may include one, two, three, four, five, six, seven, eight, nine, ten, eleven, twelve or more carbon atoms. Aryl includes any aromatic hydrocarbon including phenyl, benzyl, tosyl and the like.
In some embodiments, conditions effective to cause cleavage of each of the different orthogonal protecting groups preferably do not cause cleavage of other protecting groups present on the disaccharide building block. In other embodiments, however, a particular order of cleavage is observed in order to sequentially cleave each orthogonal protecting group.
The oligosaccharide core structure is optionally equipped with a spacer or linker at the C-1 position (at the reducing end) to facilitate conjugation chemistry. The invention is not limited to a particular anomeric spacer, which can be selected based upon the intended purpose for including the spacer. The spacer can function as a chain terminating linker. Inclusion of a spacer is useful, for example, for the fabrication of oligosaccharide arrays and for the preparation of immunogens. Exemplary spacers include —(CH2)nNRCbz and —[(CH2)2—O—(CH2)2]nNRCbz where n=3-6 and R═Bn, Ph, or H, fluorous linkers, and linkers or spacers that are attached to or are activated for attachment to a solid support.
In another aspect, the invention includes a method for making an orthogonally protected oligosaccharide core. An exemplary synthesis of a branched pentasaccharide core is shown in Scheme 1, which can readily be modified by one of skill in the art, using the same monomeric building blocks, to make a trisaccharide core or tetrasaccharide core described herein.
In another aspect, the invention provides protected and/or masked monosaccharide and disaccharide glycosyl donors which have utility for extending the branched trisaccharide, tetrasaccharide and pentasaccharide core to yield multi-antennary glycans. The glycosyl donors contain one or more hydroxyl groups protected by a permanent protecting group (such as benzyl ether, OBn) and/or masked by a masking group (such as an acetyl ester, OAc).
In one embodiment, the glycosyl donor is a protected and/or masked glucosamine having the formula (III):
wherein R1, R2, and R3 are each independently a masking group or a permanent protecting group; wherein the masking group is preferably an acyl (e.g., acetyl) such as —C(O)R3, or a carbonate, such as —C(O)OR3; wherein R3 is an aliphatic group or an aromatic/aryl group; and wherein the permanent protecting group is preferably benzyl (Bn); and wherein the masking group and permanent protecting group are both stable under conditions used to remove orthogonal protecting groups; and
Y and X are as in formula (I).
In a preferred embodiment, R1═R2═R3.
Compounds 4 and 5 are exemplary glucosamine glycosyl donors:
In another embodiment, the glycosyl donor is a protected and/or masked lactosamine having the formula (IV):
wherein each of R1, R2, R4, R5, R6, and R7 are each independently a masking group or a permanent protecting group; wherein the masking group is preferably an acyl (e.g., acetyl) such as —C(O)R3, or a carbonate, such as —C(O)OR3; wherein R3 is an aliphatic group or an aromatic/aryl group; and wherein the permanent protecting group is preferably benzyl (Bn); and wherein the masking group and permanent protecting group are both stable under conditions used to remove orthogonal protecting groups; and
Y and X are as in formula (I).
In a preferred embodiment, R1═R2 and R4═R5═R6═R7; in another preferred embodiment, R1═R2═R4═R5═R6═R7.
Compounds 2 and 3 are exemplary lactosamine glycosyl donors:
In the chemical method of the invention, and in the chemical phase of the chemo-enzymatic method of the invention, the orthogonally protected oligosaccharide core is sequentially deprotected and linked with one, two, three, four, five or more glycosyl donors in a chemical synthesis resulting in a complex bi-, tri-, tetra- or penta-antennary glycan (collectively referred to herein as a “multi-antennary” glycan) which has two, three, four or five branching arms, respectively. The orthogonally protected oligosaccharide core is selectively deprotected in a series of reactions that remove protecting groups. A deprotection sequence is utilized such that cleavage conditions for the orthogonal protecting group being removed do not cause cleavage of other protecting groups that are present on the oligosaccharide core. For example, in some embodiments it may be advantageous to cleave one particular orthogonal protecting group before another, if the cleavage conditions for the second protecting group would cause cleavage of the first protecting group as well. In preferred embodiments, orthogonal protecting groups can be removed in any order.
Cleavage of an orthogonal protecting group converts the oligosaccharide core into a glycosyl acceptor. As each orthogonal protecting group is cleaved, the deprotected site(s), which are typically hydroxyl(s), become available for glycosylation with a glycosyl donor to effect chain extension. The remaining protecting groups are removed in later reaction steps, yielding a deprotected multi-antennary glycan, known herein as the “enzymatic precursor,” from which all protecting groups have been removed except those being used to “mask” the glycan during the optional subsequent enzymatic phase of the chemo-enzymatic synthesis. The masking groups (e.g., the acyl esters and/or carbonates) are positioned on one or more of the glycan's “arms.” Masking disables the glycosyl-accepting properties of the oligosaccharide at those positions. In addition, many glycosyl transferases are known to recognize N-acetyl lactosamine (LacNAc) but not N-acetyl glucosamine (GlcNAc). The enzymatic phase of the chemo-enzymatic synthesis takes advantage of the fact that these enzymes will only glycosylate the non-acetylated lactosamine arm(s) and not the acetylated lactosamine and terminal GlcNAc moieties. The deprotected, masked glycan is now ready to serve as a substrate for the selected carbohydrate processing enzymes during the enzymatic phase of the chemo-enzymatic method of the invention. It should be clear that a large number of multi-antennary glycans can be produced using the method of the invention, which can be collected to form a chemical library. The oligosaccharides produced using the invention, as well as chemical libraries containing these oligosaccharides, are also included in the invention.
Exemplary embodiments of the synthesis of multi-antennary glycans from orthogonally protected oligosaccharide core molecules are shown in Schemes 3 and 4. As each orthogonal protecting group is removed to reveal a free hydroxyl (thereby converting the oligosaccharide into a glycosyl acceptor), the glycosyl donor of interest is attached using an appropriate promoter such as trifluoromethanesulfonic acid (TfOH) or trimethylsilyl trifluoromethanesulfonate (TMSOTf) (which are especially useful for imidates), and an organic solvent, such as dichloromethane, diethyl ether, acetonitrile or dichloroethane, at an appropriate temperature to effect glycosylation. See, e.g., Schmidt et al., 2003 Trends Microbiol. 11:554-561; and Schmidt, 1986 Angew. Chem. Int. Ed. Engl. 25:212-235; Zhu et al., 2009, Angew. Chem. Int. Ed. Engl., 48, 1900-1934 (describing suitable promoters and catalysts). After the required orthogonal protecting groups have been removed and chain extension is complete, any remaining orthogonal and permanent protecting groups are chemically removed. The resulting oligosaccharide will be “masked” at selected positions in order to provide control over enzymatic extension in the enzymatic phase. In this fashion, entire libraries of asymmetric bi-, tri-, tetra- and penta-antennary “enzymatic precursor” oligosaccharides are produced.
In the enzymatic phase of the chemo-enzymatic synthesis of the invention, which is optional, further chain extension is effected enzymatically. The multi-antennary oligosaccharide is linked successively with one or more carbohydrate processing enzymes. At any point in the enzymatic phase, masking groups (typically, acetyl) can be removed in order to make the previously masked end(s) available for chain extension reactions. The researcher can specify the identity and order of use of the carbohydrate processing enzymes so as to achieve synthesis of a desired complex glycan. In addition to extending the chain(s), carbohydrate processing enzymes may be used to trim or remodel the glycan during synthesis so as to achieve the desired product. Exemplary enzymatic syntheses are shown in Schemes 5, 6 and 7, below. Entire libraries of asymmetric, multi-antennary glycans, such as N-glycans, can be produced.
The wide variety of multi-antennary complex glycans that can be produced using the method of the invention has many scientific and medical applications. Scientific knowledge of the biological roles of various carbohydrates has been hampered by the lack of reliable synthetic methods, and the present invention provides a rapid and effective synthesis of complex glycans for use in research, drug screening, diagnostics and the like. The compounds of the invention can be used to make glycan microarrays and as components of other research tools useful, for example, in the study of glycomics. They may also be used for the preparation of glycopeptides, glycoproteins, antibodies, and other glycoconjugates. They can be linked to a multivalent scaffold to increase affinity for a carbohydrate binding protein. An exemplary synthesis of an oligosaccharide with a potential biomedical use, a compound found in oocytes, is described below.
Glycomics is an emerging field of integrated research to study structure-function relationships of complex carbohydrates. Key glycomics technologies include mass spectrometric profiling of glycan structures isolated from cells and tissues (Haslam et al., 2006 Curr. Opin. Struct. Biol. 16:584-591; Nana et al., 2008 Trends Glycosci. Glycotech. 20:97-116; Zaia, 2004 Mass Spectrom. Rev. 23:161-227), glyco-gene microarray technology for measuring the expression levels of glycoenzymes and glycan-binding proteins and screening for glycan-protein interactions using glycan and lectin array technologies (Paulson et al., 2006 Nat. Chem. Biol. 2:238-248; Miyamoto, 2006 Curr. Opin. Mol. Ther. 8:507-513; Feizi et al., 2003 Curr. Opin. Struct. Biol. 13:637-645; de Paz et al., 2006 Methods Enzymol. 415:269-292; Alvarez and Blixt, 2006 Methods Enzymol. 415:292-310; Hirabayashi, 2008 J. Biochem. 144:139-147). The diverse data sets generated by the use of these technologies are beginning to provide an understanding of the fundamental structure-function relationships of glycans. Critical components that enable this process are bioinformatics platforms that store, integrate, process, and disseminate the data in a meaningful way (Raman et al., 2005 Nat. Methods 2:817-824; Raman et al., 2006 Glycobiology 16:82R-90R; Aoki-Kinoshita, 2008 Exp. Opin. Drug Discov. 3:877-890).
In many cases, well-defined oligosaccharides can only be obtained by chemical- or enzymatic synthesis. Although these approaches are still plagued with problems, synthetic compounds are increasingly being used to address important problems in glycobiology research and for vaccine and drug discovery. In this respect, new leaving groups for the anomeric center have been developed, which can be introduced under mild reaction conditions and are sufficiently stable for purification and storage for a considerable period of time. The most commonly employed glycosyl donors include anomeric fluorides, trichloroacetimidates, and thioglycosides. Convergent synthetic strategies that allow the convenient assembly of complex oligosaccharides from properly protected building units involving a minimum number of synthetic steps have become available.
Despite these advances, the synthesis of N-linked oligosaccharides is plagued by many difficulties. In this respect, chemical oligosaccharide synthesis involves elaborate and lengthy protecting group and glycosylation procedures and even in specialized laboratories the preparation of one compound takes, in general, takes many months to as much as a year to complete. This problem is compounded by the fact that synthetic efforts are generally focused on the preparation of one-compound-at-the-time. Although enzymatic approaches have been successfully employed for the facile extension of synthetic core structures (Buskas et al., 2006 Glycobiology 16:113R-136R; Muir, 2003 Annu Rev. Biochem. 72:249-289), they can only provide symmetrical structures (i.e., the same oligosaccharide extension at each branching point of a bi- or tri-antennary structure). Combined these problems have made it difficult to prepare libraries of complex bi-, tri- and tetra-antennary N-linked oligosaccharides for glycomics research.
The need for efficient approaches for oligosaccharide synthesis has stimulated the development of chemo-enzymatic methods (Hanson et al., 2004 Trends Biochem. Sci. 29:656-663; Wong et al., 1995 Angew. Chem., Int. Ed. Engl. 34:521-546; Koeller and Wong, 2001 Nature 409:232-240; Gijsen et al., 1996 Chem. Rev. 96:443). The enzymatic methods bypass the need for protecting groups since the enzymes control both the regio- and stereo-selectivity of glycosylation. Two basic approaches for enzymatic oligosaccharide synthesis are available, namely, the use of glycosyl transferases and reverse activity of glycosyl hydrolases. Glycosyl transferases are essential enzymes for oligosaccharide biosyntheses and transfer a sugar residue from a sugar-nucleotide mono- and di-phosphate to a maturing oligosaccharide chain. These enzymes are highly regio- and stereoselective and can be obtained by cloning and over-expression. The use of these enzymes combined with sophisticated methods to regenerate sugar nucleotides has led to the preparation of large collections of complex oligosaccharides and glycopeptides. The power of synthesis using glycosyltransferases was, for example, elegantly demonstrated by the construction of a range of glycopeptides derived from the N-terminus of P-Selectin Glycoprotein Ligand-1 (Leppanen et al., 1999 J. Biol. Chem. 274:24838-24848; Leppanen et al., 2000 Glycobiology 10:1106-1107), which is part of a family of adhesion proteins involved in the inflammatory cascade. A serious limitation of current chemo-enzymatic synthetic approaches is that it does not provide entry into biologically important asymmetrically branched oligosaccharides.
The present invention provides chemical and chemo-enzymatic methods for the synthesis of a wide array of oligosaccharides, including asymmetrically branched glycans. The chemo-enzymatic method of the invention includes a chemical synthesis phase, and an optional enzymatic synthesis phase. Initially, an orthogonally protected oligosaccharide core is sequentially deprotected and linked with one, two, three, four, or more glycosyl donors in a chemical synthesis resulting in a complex bi-, tri-, tetra- or penta-antennary glycan (collectively referred to herein as a “multi-antennary” glycan) which has two, three, four or five branching arms, respectively. The glycosyl donors contain one or more hydroxyl groups protected by a permanent protecting group (such as benzyl, Bn, which forms a benzyl ether) and/or masked by a masking group (such as acetyl, Ac, to form an acetyl ester). This resulting multi-antennary glycan, known herein as the “enzymatic precursor,” can be deprotected and/or unmasked in order to yield a final oligosaccharide product, or it can be selectively extended enzymatically in an enzymatic phase to yield a final complex oligosaccharide product. The chemically synthesized multi-antennary glycan is termed an “enzymatic precursor” because it is the reactant upon which subsequent selective enzymatic extension is performed during the optional enzymatic phase of the synthesis.
The novel chemical compounds described herein, including the oligosaccharide core compounds, the enzyme precursor compounds, and the final oligosaccharide products, as well as all intermediate compounds described herein, are also included in the invention, as are their methods of making and methods of use.
In a preferred embodiment, the chemical synthesis phase occurs prior to the enzymatic synthesis phase. Employing a chemical synthesis phase prior to the enzymatic phase advantageously permits the synthesis of an asymmetric enzymatic precursor, which in turn permits the synthesis of biologically relevant asymmetrically branched oligosaccharides. It should be understood that enzymatic synthesis may optionally precede chemical synthesis, and further that multiple alternating chemical and enzymatic synthesis phases can be utilized as desired for the production of any particular oligosaccharide.
The oligosaccharide core, which functions as a reactant in the chemical synthesis phase of the synthetic methods of the invention, is a branched oligosaccharide. Preferably, it is a branched trisaccharide, tetrasaccharide, pentasaccharide, hexasaccharide or heptasaccharide. In one embodiment, the trisaccharide core is a branched trimannoside core (Man3), preferably α-D-mannopyranosyl-(1→6)-[α-D-mannopyranosyl-(1→3]-D-mannopyranose (or pyranoside). A protected glucosamine moiety is optionally present at the C-4 position of the central or branching mannoside of the trimannoside.
The oligosaccharide core optionally contains one or two glycoside moieties linked to the reducing end of the trimannoside core structure to form a tetrasaccharide or a pentasaccharide. The one or two glycoside moieties linked to the reducing end of the trimannoside core structure are preferably protected glucosamine moieties (GlcNR) such as GlcNAc or a derivative thereof. When a glucosamine, GlcNAc or a derivative thereof is present at the reducing end of the oligosaccharide core, it is optionally modified by a fucoside at position C-6. A preferred oligosaccharide core is the pentasaccharide Man3GlcNAc2. An example of a preferred pentasaccharide is compound 1 (
The oligosaccharide core is orthogonally protected with two, three, four or five orthogonal protecting groups. Preferably, four different orthogonal protecting groups are used. The orthogonal protecting groups are positioned at hydroxyl groups on the two terminal moieties that form the non-reducing ends of the oligosaccharide core. More specifically, orthogonal protecting groups are positioned at hydroxyl groups at one or more of the following ring positions: C-2 of the 1,6-linked mannoside, C-6 of the 1,6 linked mannoside, C-2 on the 1,3-linked mannoside, C-4 on the 1,3-linked mannoside, and C-4 of the central mannoside. As noted above, in N-linked glycans there is optionally an additional bisecting protected glucosamine moiety at the C-4 position of what is, in the tetrasaccharide or pentasaccharide embodiment, the central mannoside moiety. When two orthogonal protecting groups are used, a biantennary glycan can be produced; when three orthogonal protecting groups are used, a biantennary or triantennary glycan can be produced; and when four orthogonal protecting groups are used, a biantennary, triantennary or tetraantennary glycan can be produced. Using four orthogonal protecting groups on the oligosaccharide core thus affords the most flexibility during synthesis. “Orthogonal” protecting groups, as that term is used herein, are those that can be sequentially removed, preferably but not necessarily in any order, and include, without limitation, levulinoyl (Lev); 9-fluorenylmethoxycarbonyl (Fmoc); allyloxycarbonyl (Alloc); 2-naphthylmethyl (Nap) or 1-naphthylmethyl (1-Nap); benzoyl (Bz); difluorobenzoyl (dfBz); pivaloyl levulinoyl (PivLev); pivaloyl benzoyl (PivBz); para-methoxybenzyl ether (PMB); methoxy phenyl ether (MP); allyl ether (Allyl); chloroacetyl ester (ClAc); trichloroacetyl ester (Cl3Ac), trifluoroacetyl ester (F3Ac); and silyl ethers such as t-butyldimethyl silyl (TBS), t-butyldiphenyl silyl, 2-(trimethylsilyl)ethoxymethyl ether (SEM) and texyldimethyl silyl (TDS). For example, in compound 1 (
The other hydroxyl groups on the oligosaccharide core, that is, the ones that are not orthogonally protected, are preferably protected with permanent protecting groups. Permanent protecting groups are stable to the reaction conditions used to remove orthogonal protecting groups, but can be removed at the final stage of the chemical synthesis phase. An exemplary permanent protecting group is benzyl (Bn). Various protecting groups (orthogonal, temporary and permanent) as wells linkers, spacers and other derivatizing agents suitable for use in the compounds and methods of the invention are described in International Patent Publication WO2010/117803, published Oct. 14, 2010.
The reducing end of the oligosaccharide core can be permanently protected, as with OBn group as shown for compound 1 (
If the oligosaccharide core includes one or more glucosamine residues, the amino moieties of the glucosamine residues are protected or masked, for example using an amine functional protecting group such as Troc, trichloroacetyl (TCA), trifluoroacetyl (TFA), phthalimido (Phth), azide, or acetyl (Ac).
In the chemical phase of the synthetic methods, the orthogonally protected oligosaccharide core is sequentially deprotected and linked with two or more glycosyl donors under conditions to selectively extend the oligosaccharide. Orthogonal protecting groups can be removed sequentially, one at a time. In some embodiments, orthogonal protecting groups can be sequentially removed in any order (corresponding to a strict definition of orthogonality); however, in other embodiments, although the orthogonal protecting groups can be removed sequentially, not every possible deprotection sequence will be effective. For example, there may be a protecting group A that can be removed without affecting B, but not the other way around, as when A is more base labile than B. Thus, it should be understood that as the term “orthogonal” or “orthogonally” is used here in, it specifies that sequential removal can occur, but not necessarily in all possible orders. One at a time, protecting groups are removed and the oligosaccharide core is linked with a glycosyl donor. Up to four, five or even more orthogonal protecting groups can be present on a single oligosaccharide core, and thus up to four, five or even more glycosyl donors can be employed, in sequential reactions, thereby generating a enzymatic precursor oligosaccharide that has up to five non-reducing ends (antennae or “arms”).
Glycosyl donors are typically monosaccharides or disaccharides. Preferred glycosyl donors include protected and/or masked glucosamine (a monosaccharide) and lactosamine (a disaccharide that contains glucosamine). Particularly preferred glycosyl donors for use in the chemical phase of the synthesis are compounds 2, 3, 4 and 5 shown in
The ring hydroxyls of the glycosyl donor are either protected with a permanent protecting group, such as benzyl, Bn, or they are masked with a masking group such as an acetyl ester (OAc). Stable, non-labile esters and carbomates are typically good masking groups. More generally, a masking group can be —C(O)R or —C(O)OR where R is an aliphatic group, or an aromatic/aryl group. Masking groups are known to the art and are stable to conditions used to remove orthogonal protecting groups; they are also stable to conditions used later in the chemical synthesis to remove so-called “permanent” hydroxyl and amine protecting groups, such as benzyl ethers and Troc carbamate. They can remain in place during the enzymatic phase of the synthesis to block enzymatic extension of the oligosaccharide at those sites. When and if desired, at any point in the enzymatic synthesis, masking groups can be removed (for example, Ac can be removed by deacetylation) so as to allow for enzymatic extension at that position at that stage of the enzymatic synthesis. Which hydroxyls are protected, and which are masked, is determined by the synthetic sequence that is to be carried out. In some embodiments of the glycosyl donor, the ring hydroxyls are protected but not masked (see, e.g., compounds 2 and 4); in other embodiments, the ring hydroxyls are masked but not protected (see, e.g., compound 5); and in yet other embodiments, some ring hydroxyls are masked, while others are protected (see, e.g., compound 3). It should be understood that especially in the case of disaccharide glycosyl donors (such as lactosamine), the ring hydroxyls can be either all protected, all masked, or some protected and some masked.
At the end of the chemical synthesis phase of the synthetic method of the invention, the chemically synthesized multi-antennary oligosaccharide is deprotected; that is, any remaining permanent hydroxyl and amino protecting groups (the amines may be, for example, acetylated) are removed. The deprotected multi-antennary oligosaccharide is typically a complex, asymmetric oligosaccharide that is now ready to be extended in the optional enzymatic phase of the chemo-enzymatic synthesis, and thus is termed an “enzyme precursor” oligosaccharide. The enzyme precursor oligosaccharide preferably contains masking groups positioned at one or more ring hydroxyls and/or amines which function to prevent a carbohydrate processing enzyme from extending the chain at that position. It will be remembered that enzymatic extension produces the same oligosaccharide extension at each branching point of a bi- or tri-antennary structure, but that this can be prevented or controlled via the use of masking groups. By chemically producing asymmetric “enzyme precursors” having masking groups at strategic positions, and having chain extensions derived from GlcNAc and LacNAc, the enzymatic extension of the oligosaccharide can be controlled.
The number of different orthogonal protecting groups used on the oligosaccharide core determines the how many branches the enzyme precursor oligosaccharide contains. Thus, when four orthogonal protecting groups are used, a tetra-antennary glycan can be produced (see, for example,
Protecting groups per se are not needed in the enzymatic phase of the chemo-enzymatic synthesis since enzymes control both the regio- and stereo-selectivity of glycosylation. However, carbohydrate processing enzymes generally will add the same oligosaccharide extension at each arm, typically at arms having the same monosaccharide unit at the nonreducing end, of a bi-, tri- or tetra-antennary structure. Thus, in order to achieve the most control over the enzymatic phase of the synthesis, the enzymatic precursor compound is preferably masked by a masking group on any arm that would otherwise serve as a substrate for the enzyme, but is not intended to be extended in that round of enzymatic synthesis.
One surprising result of this work is that the carbohydrate processing enzymes were still able to effectively extend one arm of the glycan while the other arm(s) were protected with acetyl esters. It was not known in advance whether the masking groups would interfere with the glycosyl accepting properties of the unmodified arms; the enzymes might still have been active, but not able to recognize the arms that do not contain the masking groups. However, in all cases tested, the enzymes functioned as intended to catalyze extensions of the exposed arm(s).
Carbohydrate processing enzymes useful in the enzymatic phase of the chemo-enzymatic method include, for example, glycosyl transferases, glycosidases and sulfotransferases. Glycosyl transferases transfer a sugar residue from a sugar-nucleotide mono- and di-phosphate to a maturing oligosaccharide chain. Exemplary carbohydrate processing enzymes include glycosyltransferases, such as glucosyltransferases (GlcTs) and glucouronyltransferases (GlcATs), mannosyltransferases (ManTs), sialyltransferases (SiaTs), galactosyltransferases (GalTs), fucosyltransferases (FecTs) and N-acetylhexoaminyltransferases (GlcNAct and GalNAcT); glycosidases such as glycoside hydrolyases, including exo-glycosidases and endo-glycosidases; and glycosynthases such as exo-glycosynthases and endo-glycosynthases. See Schmaltz et al., Chem Rev 2001, 111, 4259-4307). Some carbohydrate processing enzymes are commercially available; others can be isolated from organisms that produce them, or cloned, expressed, and isolated. Carbohydrate processing enzymes can be found in all organisms including microorganisms such as bacteria and protists, yeasts, fungi, plants, and animals, including humans. The invention is not limited by the type of carbohydrate processing enzyme or its source. The particular carbohydrate processing enzymes selected for use in the enzymatic synthesis phase of the chemo-enzymatic synthetic method are determined and defined by the particular end-product oligosaccharide that is desired.
Enzymatic extension depends on an adequate supply of monosaccharide glycosyl donors in order to extend the growing multi-antennary oligosaccharide in each round of enzymatic synthesis. Disaccharide or higher order glycosyl donors may be used. Examples of glycosyl donors useful in the enzymatic phase of the chemo-enzymatic method of the invention include CMP-sialic acid, CMP-Neu5Ac, GDP-Fuc, UDP-GlcNAc, UDP-Gal, UDP-GalNAc, and the like. Advantageously, derivatives of glycosyl donors that have been modified for use in subsequent chemical or enzymatic reactions can be employed for enzymatic chain extension. For example, a glycosyl donor can contain an azido- or alkyne group, making it suitable for us in click chemistry. The resulting oligosaccharides, as well as oligosaccharide intermediates, can optionally be further enzymatically modified by sulfates using appropriate sulfotransferases.
The oligosaccharide produced by chemical or chemo-enzymatic synthesis described herein is a complex, asymmetric, multi-antennary glycan. The resulting multi-antennary glycan can contain 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20 or even more monosaccharide residues, in almost limitless combination, composition, order, linkage position and linkage stereochemistry (α, β).
Importantly, the synthetic methods describe herein, and in particular the chemo-enzymatic technology described herein, make it possible to conveniently prepare libraries of complex asymmetrically substituted N-glycans. An important feature of the technology is the use of a core oligosaccharide, exemplified by compound 1 in
This technology thus not only allows many different complex glycans to be synthesized from the same oligosaccharide core, but also even from the same enzyme precursor oligosaccharide, by changing the type and order of the enzymatic reactions used in the enzyme phase. The chemo-enzymatic method of the invention additionally allows a researcher to envision a complex, multi-antennary oligosaccharide product, then readily synthesize that product by combining known enzymatic specificities with orthogonal chemical synthesis as described herein.
The present invention is illustrated by the following examples. It is to be understood that the particular examples, materials, amounts, and procedures are to be interpreted broadly in accordance with the scope and spirit of the invention as set forth herein.
We have developed a chemo-enzymatic technology that makes it possible to conveniently prepare libraries of complex asymmetrically substituted N-glycans. A key feature of the technology will be the use of the core oligosaccharide 1, which at key branching positions, is modified by the orthogonal protecting groups Lev, Fmoc, Alloc, and 2-naphtyl methyl ether (Nap) (
We have observed difficulties when highly complex oligosaccharide donors were attached to core compound 1. To address this difficulty, we describe here a novel chemoenzymatic approach in which the relatively simple LacNAc and GlcNAc donors 2-5 are used for chemical glycosylation of compound 1. After removal of the protecting groups except the acetyl esters, a “precursor” oligosaccharide is obtained where each antenna can be selectively extended by glycosyl transferases to give a large number of highly complex asymmetrically substituted bi-, tri-, and tetra-antennary glycans. Selective enzymatic modification at each branching point will be feasible because each of these positions will be modified by a unique saccharide moiety. In this respect, GlcNAc or LAcNAc are recognized by different glycosyl transferases and C-3 acetylated LAcNAc and GlcNAc, are not recognized by glycosyl transferases. The latter moieties can, however, become acceptors for glycosyl transferases by removal of the acetyl ester.
As a generic example, oligosaccharide 1 is a “precursor” structure for complex tetra-antennary glycans (
Chemical Synthesis of Orthogonally Protected Core Oligosaccharide 1.
Orthogonally protected pentasaccharide 1 was prepared from monosaccharide building blocks 6, 7, 11, 14 and 17 (Scheme 1). Thus, mannosyl donor 6 was coupled with glucosamine acceptor 7 using the Crich protocol (Crich and Li, 2000 J. Org. Chem. 65:801-805; Crich and Sun, 1997 J. Am. Chem. Soc. 119:11217-11223) to provide β-mannoside 8 as the predominant compound. In this glycosylation, thioglycoside 6 was first activated with BSP and triflic anhydride in the presence of a hindered base to give an α-anomeric triflate intermediate, which upon addition of sugar alcohol 7, was displaced to provide a β-mannoside. The anomeric TDS group of 8 was removed by treatment with HF in pyridine to give lactol 9, which was converted into a trifluoro-N-phenylimidate 10 by treatment with N-phenyltrifluoroacetimidoyl chloride in the presence of DBU. A TfOH mediated glycosylation (Schmidt, 1986 Angew. Chem. Int. Ed. Engl. 25:212-235) of 10 with 11 gave trisaccharide 12 in an excellent yield as only the β-anomer. Next, the NAP ether was removed by oxidation with DDQ in a mixture of DCM and water and the resulting alcohol 13 was coupled with glycosyl donor 14 using TfOH as the activator resulting in the formation of tetrasaccharide 15 in high yield. The benzylidene acetal of 15 was regioselectively opened using triethylsilane and PhBCl2 to provide glycosyl acceptor 16, which was coupled with 17 using standard conditions to provide target compound 1.
Next, the orthogonality of the four temporary protecting groups of 1 was examined (Scheme 2). Thus, the Fmoc group of 1 could be selectively removed by employing the hindered base Et3N in DCM resulting in the clean formation of compound 18. Compound 19 was isolated in high yield by oxidation of the Nap ether of 1 with DDQ in a mixture of DCM and water (Gaunt et al., 1998 J. Org. Chem. 63:4172-4173). The Alloc functionality of 1 could be readily cleaved by treatment with Pd(PPh3)4 (Tsukamoto et al., 1997 Biosci. Biotechnol. Biochem. 61:1650-1657) to give compound 20 and finally, treatment of 1 with the nucleophilic base hydrazine acetate in DCM (Zhu and Boons, 2000 Tetrahedron: Asymmetry 11:199-205; Zhu and Boons, 2001 Chem. Eur. J. 7:2382-2389) resulted in cleavage of the Lev ester without affecting the other protecting groups providing pentasaccharide 21 in a yield of 85%.
Having demonstrated the orthogonality of the temporary protecting groups, attention was focused on the preparation of tri-antennary oligosaccharides 27 (Scheme 3) and 32 (Scheme 4). Thus, glycosyl acceptor 18 was coupled with O-benzylated LacNAc donor 2 using TfOH as the promoter to give heptasaccharide 22 in a yield of 97%. The NAP ether of 22 was removed by treatment with DDQ in a mixture of DCM and water the hydroxyl of the resulting acceptor 23 was coupled with partially acetylated glycosyl donor 3 to afford 24. The next step of the assembly entailed the removal of the Lev ester of 24 by treatment with hydrazine acetate in DCM and the hydroxyl of the resulting compound 25 was coupled with GlcNAc donor 4 using standard activation conditions to provide decasaccharide 26. Partial deprotection of the latter compound was easily accomplished by a four-step procedure to give target compound 27 and entailed removal of the Troc groups with Zn in acetic acid, acetylation of the resulting free amines with acetic anhydride in methanol, cleavage of the Alloc function by treatment with Pd(PPh3)4 (Tsukamoto et al., 1997 Biosci. Biotechnol. Biochem. 61:1650-1657) and finally catalytic hydrogenolysis of the benzyl ethers.
Decasaccharide 32 could be prepared by a similar strategy starting from compound 22. In this case, the Alloc protecting group was removed using Pd(PPH3)4 and the resulting acceptor 28 was glycosylated with 3 using standard conditions to provide nonasaccharide 29. Next, the Lev ester of 29 was cleaved with hydrazine acetate to give compound 30, which was coupled with 4, to give fully protected decasaccharide 31. Partial deprotection of 31 to give target compound 32 was accomplished by treatment with Zn in acetic acid to remove the Troc functions, acetylation of the resulting free amines with acetic anhydride in methanol and catalytic hydrogenolysis of the 2-naphtyl methyl ether and the benzyl ethers.
Enzymatic Modifications to Provide Asymmetrically Substituted N-Glycans.
The “precursor” oligosaccharides 27 (Scheme 5) and 32 (Scheme 6) were employed for further extension by glycosyl transferases. Thus, the LacNAc moiety of decasaccharide 27 was selectively sialylated by using rST3Gal-III, CMP-Neu5Ac and Calf Intestine Alkaline Phosphatase (CIAP) to give compound 33. This enzyme did not modify the acetylated LacNAc arm and terminal GlcNAc moiety. Next, the acetyl moieties of 33 were removed by treatment with aqueous ammonia and treatment of the resulting compound 34 with α1,3-fucosyltransferase (α3FucT) resulted in fucosylation of the LacNAc and sialyl-LacNAc arms providing bis-fucosylated derivative 35. The GlcNAc moiety at the C-6 antenna was extended to a LacNAc moiety by employing β1-4-galactosyltransferase (GalT-1), UDP-Gal and CIAP to give 36. Treatment of 36 with β1-3-N-acetylglucosaminyltransferase (β1-3GlcNAcT), UDP-GlcNAc and CIAP resulted in selective addition of a β(1-3) linked GlcNAc moiety to the LAcNAc arm and importantly the Lex arm of compound was unaffected by this enzyme. The β1-6 branch was further extended by the action of GalT-1 and ST6Gal-1 to provide compound 39, which has a unique oligosaccharide structure at each of the three antennae. The compound can be remodeled by glycosidases and for example treatment of 39 with α1-3,4-Fucosidase gave compound 40. In this approach, the fucosides served as a blocking group to allow selective extension of the C-6 antenna. After each step, the compound was purified by size exclusion chromatography over Sephadex G-25 and the resulting compound characterized by NMR, Mass spectrometry and methylation analysis. These analyses demonstrated homogeneity of all compounds.
Compounds 41-48 were prepared starting from precursor decasaccharide 32. Thus, 32 was sialylated using rST3Gal-III to provide 41, which was deacetylated to provide 42 which was further extended respectively by α1-3FucT, β1-44GalT, β1-3GlcNAcT, β1-4GalT, rST3Gal-III and finally α1-3FucT to give 48.
Compounds 27 and 32 could also be employed to make tri-antennary structures that have two different arms. For example, compound 56, which has been found on the human oocytes (Pang eta 1, 2011 Science 333:1761-1764) was synthesized by deacetylation of 32 to give 50, which was further extended, respectively by rST3Gal-III, α1-3FucT, β1-4GalT, β1-3GlcNAcT, β1-4GalT, rST3Gal-III and finally α1-3FucT.
A solution of β-D-glucosamine 57 (40 g, 186 mmol) and solid NaHCO3 (46.8 g, 558 mmol) were put into H2O (360 mL). The mixture was vigorously stirred at room temperature for 30 min and then 2,2,2-Trichloroethyl chloroformate (30 mL, 223 mmol) was added dropwise to the solution over a period of 30 min. The mixture was stirred at room temperature for another 4 h and filtered to give a yellowish solid. The resulting solid (54 g, 150 mmol) was dissolved in pyridine (200 mL) and then cooled down to 0° C., followed by slow addition of acetic anhydride (88 ml, 900 mmol). The mixture was stirred at room temperature overnight and quenched by ethanol (100 mL) at 0° C. The mixture was stirred at room temperature overnight and was concentrated. The resulting residue was diluted with EtOAc (500 mL) and then washed with saturated aqueous solution of NaHCO3, 10% of HCl, water and then dried over Na2SO4, filtered and concentrated to dryness under vacuo without further purification. The obtained solid 58 (60 g, 115 mmol) was dissolved in DMF (300 mL) and hydrazine acetate (11.6 g, 127 mmol) was added. The mixture was stirred at room temperature overnight and then concentrated to dryness. The resulting residue was diluted with EtOAc (500 mL) and then washed with saturated aqueous solution of NaHCO3 and water. The organic phase was dried over Na2SO4, filtered and concentrated to dryness. Silica gel column chromatography (3:2 hexanes-EtOAc) afforded compound 59 (46.3 g, 84%). 59 (29 g, 60.3 mmol), Chloro(dimethyl)thexylsilane (17.8 mL, 90.5 mmol), imidazole (8.2 g, 120.6 mmol) were dissolved in DMF (150 mL). The mixture was stirred at room temperature for 16 h and then concentrated to dryness. The resulting residue was diluted with EtOAc (500 mL) and then washed with saturated aqueous NH4Cl and then dried over Na2SO4, filtered and the solvents were removed in vacuum. Silica gel column chromatography (3:2 hexanes-EtOAc) afforded compound 60 as white solid (31.2 g, 83%). Compound 60, NaOCH3, and Guanidine chloride (0.1 M, 200 mL) were stirred at room temperature for 40 min under N2 and then was neutralized with Amberlite IR-120 and concentrated to dryness. The resulting residue (31.5 g, 63.4 mmol), benzaldehyde dimethyl acetal (10.47 mL, 69.7 mmol) and camphorsulfonic acid (3 g, 12.7 mmol) in anhydrous CH3CN (200 mL) was stirred at room temperature for 2 h and then the reaction was quenched by Et3N. The reaction mixture was diluted with EtOAc (500 mL) and washed with a saturated aqueous solution of NaHCO3, water and then dried over Na2SO4, filtered and concentrated. Silica gel column chromatography (3:1 hexanes-EtOAc) afforded 61 as white solid (29.8 g, 80%). 1H-NMR (500 MHz, CDCl3): δ0.00-0.01 (m, 6H, TDS), 0.70-0.74 (m, 12H, TDS), 1.46-1.49 (m, 1H, TDS), 3.05 (br, 1H, 3-OH), 3.20-3.30 (m, 2H, H-2, H-4), 3.40 (t, 1H, J=9.5 Hz, H-6b), 3.60 (t, 1H, J=9.5 Hz, H-6a), 3.78-3.81 (m, 1H, H-5), 4.13 (dd, 1H, J=10.5 Hz, 5.0 Hz, H-3), 4.51-4.63 (m, 3H, NH, 2Troc), 4.97 (d, 1H, J=7.5 Hz, H-1), 5.37 (s, 1H, PhCH), 7.22-7.27 (m, 3H), 7.35-7.37 (m, 2H); 13C-NMR (75 MHz, CDCl3): δ-3.4, −1.9, 18.5, 18.6, 20.0, 24.8, 34.0, 60.7, 66.2, 68.6, 70.8, 74.9, 81.5, 95.2, 96.2, 101.9, 126.5, 128.4, 129.4, 137.1, 154.5.
Compound 61 (26 g, 44.5 mmol) was dissolved in DCM (200 mL). To this solution, acid washed 4 Å molecular sieve, Benzyl bromide (13.2 mL, 0.11 mol) and freshly prepared Silver (II) oxide (20.6 g, 2 eq, 89 mmol) were added at room temperature. The reaction was protected from light and stirred at room temperature for 30 hours at which point it was filtered through Celite to remove the Silver (II) oxide and concentrated. Silica gel chromatography (4:1 hexanes-EtOAc) afforded compound 62 (21 g, 70%). 1H-NMR (500 MHz, CDCl3): δ0.00-0.03 (m, 6H, TDS), 0.72-0.76 (m, 12H, TDS), 1.47-1.52 (m, 1H, TDS), 3.18-3.23 (m, 1H, H-4), 3.32-3.36 (m, 1H, H-2), 3.60-3.70 (m, 2H, H-6a, H-6b), 4.18 (dd, 1H, J=10.5 Hz, 5.0 Hz, H-3), 4.50-4.56 (m, 2H, Troc), 4.57 (d, 1H, J=12.0 Hz, Bn), 4.78 (d, 1H, J=12.0 Hz, Bn), 4.81 (d, 1H, J=7.5 Hz, H-1), 4.92 (br, 1H, NH), 5.46 (s, 1H, PhCH), 7.13-7.20 (m, 5H), 7.24-7.30 (m, 3H), 7.37-7.39 (m, 2H); 13C-NMR (75 MHz, CDCl3): δ-3.4, −1.8, 18.5 (×2), 20.0 (×2), 24.8, 34.0, 60.1, 66.0, 68.8, 74.3, 74.6, 76.4, 82.7, 95.4, 95.9, 101.2, 126.1, 127.8, 128.2, 128.3, 128.4, 129.0, 137.4, 138.2, 153.8.
Compound 62 (6.0 g, 8.9 mmol) was dissolved in DCM (200 mL) and the solution was cooled down to −78° C., followed by sequential addition of Triethylsilane (4.54 mL, 28.5 mmol) and TfOH (2.3 mL, 25.8 mmol). The mixture was stirred at −78° C. for 1 h and then quenched by MeOH/Et3N (5 mL/each). The resulting mixture was washed by saturated aqueous NaHCO3 and H2O and concentrated. Silica gel chromatography (4:1 hexanes-EtOAc) afforded compound 7 (4.7 g, 78%). 1H-NMR (500 MHz, CDCl3): δ0.00-0.04 (m, 6H, TDS), 0.71-0.75 (m, 12H, TDS), 1.46-1.52 (m, 1H, TDS), 3.00 (br, 1H, 4-OH), 3.22-3.31 (m, 2H, H-2, H-6b), 3.54-3.58 (m, 4H, H-3, H-4, H-5, H-6a), 3.40-3.47 (m, 2H, Troc), 4.51-4.66 (m, 5H, H-1, Bn), 5.01-5.03 (br, 1H, NH), 7.13-7.22 (m, 10H); 13C-NMR (75 MHz, CDCl3): δ-3.5, −1.9, 18.4, 18.5, 19.9, 20.0, 24.7, 33.9, 59.0, 70.3, 72.3, 73.5, 74.0, 74.4, 80.4, 95.3, 95.5, 127.5, 127.6, 127.7, 127.9, 128.3, 128.4, 137.8, 138.3, 153.9.
Compound 62 (5 g, 7.4 mmol) was dissolved in pyridine (70 mL). The mixture was cooled to 0° C., followed by addition of HF (35 mL, 65-70% in pyridine). The mixture was stirred at room temperature overnight and then was diluted in EtOAc (200 mL), washed with 10% of CuSO4, saturated aqueous NaHCO3 and H2O. The organic layer was dried over Na2SO4, filtered and concentrated. Silica gel column chromatography (6:1 hexane-EtOAc) afforded compound 63 as a white solid (3.84 g, 97%). Compound 63 (1.9 g, 3.57 mmol), Cl3CCN (7.15 mL, 71.4 mmol) and DCM (100 mL) was cooled down to 0° C. DBU (0.11 mL, 0.71 mmol) was added and the mixture was stirred at room temperature for 1 h. The mixture was concentrated. Silica gel column chromatography (6:1 hexanes-EtOAc) afforded the corresponding imidate 64 (1.47 g, 61%) as a white solid. The imidate 64 (1.47 g, 2.17 mmol), Benzyl alcohol (0.45 mL, 4.34 mmol), molecular sieve MS-4 Å and DCM (100 mL) was stirred at room temperature for 30 min. The mixture was cooled to −70° C., followed by addition of TfOH (38 μL, 0.43 mmol). The reaction mixture was stirred for 1 hour from −70 to −20° C. and at −60° C. and then was quenched with Triethylamine (0.2 mL). The mixture was diluted with DCM (300 mL), washed with a saturated aqueous solution of NaHCO3, H2O and then dried over Na2SO4, filtered and concentrated. Silica gel column chromatography (5:1:1 hexanes-EtOAc-DCM) afforded 65 as a white solid (1 g, 74%). 1H-NMR (500 MHz, CDCl3): δ3.45-3.52 (m, 2H, H-2, H-4), 3.76-3.89 (m, 2H, H-6a, H-6b), 4.00-4.04 (m, 1H, H-5), 4.41 (dd, 1H, J=10.0, 3.6 Hz, H-3), 4.62 (d, 1H, J=12.0 Hz, Bn), 4.70-4.76 (m, 1H, Bn, Troc), 4.81 (d, 1H, J=8.0 Hz,), 4.91-4.94 (m, 2H, Bn), 5.06 (br, 1H, NH), 5.63 (s, 1H, PhCH), 7.29-7.45 (m, 13H), 7.52-7.54 (m, 2H); 13C-NMR (75 MHz, CDCl3): δ58.1, 66.1, 68.8, 71.2, 74.5, 76.5, 82.6, 85.1, 99.8, 101.3, 126.0, 127.9, 128.0, 128.3 (×2), 128.4, 128.5, 129.1, 136.9, 137.3, 138.0, 153.9.
Compound 65 (1 g, 1.6 mmol) was dissolved in DCM (100 mL) and the solution was cooled down to −78° C., followed by sequential addition of Triethylsilane (0.82 mL, 5.1 mmol) and TfOH (0.41 mL, 4.7 mmol). The mixture was stirred at −78° C. for 1 h and then quenched by MeOH/Et3N (1 mL/each). The resulting mixture was washed by saturated aqueous NaHCO3 and H2O and concentrated. Silica gel chromatography (4:1:1 hexanes-EtOAc-DCM) afforded compound 11 (0.92 g, 92%). 1H-NMR (500 MHz, CDCl3): δ2.81 (br, 1H, 4-OH), 3.44-3.52 (m, 2H, H-2, H-4), 3.74-3.84 (m, 4H, H-3, H-5, H-6a, H-6b), 4.60-4.71 (m, 6H, H-1, Bn), 4.78-4.80 (m, 2H, Troc), 4.90 (d, 1H, J=12 Hz, Bn), 5.09 (br, 1H, NH), 7.25-7.42 (m, 15H); 13C-NMR (75 MHz, CDCl3): δ57.4, 70.5, 70.7, 73.1, 73.7, 73.8, 74.3, 74.5, 80.5, 99.2, 127.8, 127.9 (×2), 128.1, 128.4, 128.5, 128.6, 137.2, 137.7, 138.2, 154.0.
A solution of β-D-mannose 66 (20 g, 0.11 mol) in pyridine (250 mL) was cooled down to 0° C., followed by slow addition of acetic anhydride (105 ml, 1.1 mol). The mixture was stirred at room temperature overnight and quenched by ethanol (100 mL) at 0° C. The mixture was concentrated and then diluted with DCM (500 mL). The resulting solution was washed with saturated aqueous solution of NaHCO3, 10% of HCl, water and then dried over Na2SO4, filtered and concentrated to dryness under vacuo without further purification. The obtained solid and thiophenol (13.9 ml, 0.13 mol) were dissolved in DCM (250 mL). The mixture was cooled down to 0° C., followed by addition of boron trifluoride diethyl etherate (42 ml, 0.33 mol). The mixture was stirred at room temperature for 20 h and diluted with dichloromethane (200 mL). The resulting solution was washed with saturated aqueous solution of NaHCO3 and water and then dried over Na2SO4, filtered and concentrated to dryness. Silica gel column chromatography (3:2 hexanes-EtOAc) afforded compound 67 as white solid (44 g, 90% for 2 steps). Compound 67 (36 g, 81.7 mmol) was dissolved in methanol (500 mL) and then sodium (0.94 g, 41 mmol) was added in portions and the mixture was stirred for 4 hours at room temperature and was neutralized with Amberlite IR-120 until the pH was around 7 and then filtered, concentrated and dried under vacuum. The resulting residue, benzaldehyde dimethylacetal (8.1 mL, 0.13 mol) and camphorsulfonic acid (2.3 g, 9.8 mmol) in anhydrous DMF (100 mL) was stirred at 70° C. overnight and then the reaction was quenched by Et3N. The reaction mixture was diluted with DCM (500 mL) and washed with saturated aqueous solution of NaHCO3, water and then dried over Na2SO4, filtered and concentrated. Silica gel column chromatography (4:1 hexanes-EtOAc) afforded 68 as white solid (10.6 g, 60%). Compound 68 (5.85 g, 16.2 mmol), di-butyltin oxide (4.24 g, 17 mmol) and toluene (110 mL) were refluxed for 3 h, followed by removal of solvents under vacuo. The mixture of the resulting solid, cesium fluoride (2.59 g, 16.2 mmol), 2-(bromomethyl)naphthalene (3.77 g, 16.2 mmol) and DMF (50 mL) was stirred at room temperature overnight. DMF was removed by vacuum and the mixture was diluted with DCM (200 mL). The mixture was washed with saturated aqueous solution of NaHCO3, water and then dried over Na2SO4, filtered and concentrated. Silica gel column chromatography (3:1 hexanes-EtOAc) afforded compound 69 as white solid (7.3 g, 90%). 1H-NMR (500 MHz, CDCl3): δ3.11 (br, 1H, 2-OH), 3.91 (t, 1H, J=10.0 Hz, H-6b), 4.06 (dd, 1H, J3,4=10.0 Hz, J2,3=3.0 Hz, H-3), 4.25-4.29 (m, 2H, H-6a, H-4), 4.35-4.42 (m, 2H, H-2, H-5), 4.95 (d, 1H, J=12.0 Hz, Nap), 5.06 (d, 1H, J=12.0 Hz, Nap), 5.64 (br, 1H, H-1), 5.68 (s, 1H, PhCH), 7.29-7.35 (m, 3H), 7.42-7.59 (m, 10H), 7.79-7.81 (m, 1H), 7.86-7.89 (m, 3H); 13C-NMR (75 MHz, CDCl3): δ64.6, 68.5, 71.3, 73.1, 75.7, 78.9, 87.8, 101.7, 125.6, 126.1 (×2), 126.2, 126.7, 127.6, 127.7, 127.9, 128.2, 128.3, 129.0, 129.1, 131.7, 133.1, 133.2 (×2), 135.1, 137.4. gHMQC (without 1H decoupling): 1JC1,H1=170.0 Hz.
69 (7.0 g, 14 mmol) was dissolved in DMF (100 mL) and the solution was cooled to 0° C. NaH (0.67 g, 60% NaH in mineral oil, 16.8 mmol) was added in portions, followed by addition of Benzyl bromide (1.99 mL, 16.8 mmol). The mixture was stirred at room temperature under N2 overnight for 2 h and then the solvent was removed under vacuum. The mixture was diluted with EtOAc (200 mL) and washed with saturated NaHCO3, water, and then the organic layer was dried over Na2SO4, filtered and concentrated. Silica gel column chromatography (8:1 hexane-EtOAc) afforded compound 6 as a white solid (7.6 g, 92%). 1H-NMR (600 MHz, CDCl3): δ4.02 (t, 1H, J=8.0 Hz, H-6b), 4.18 (dd, 1H, J3,4=8.0 Hz, J2,3=3.0 Hz, H-3), 4.21-4.44 (m, 1H, H-2), 4.35-4.38 (m, 1H, H-6a), 4.43-4.47 (m, 1H, H-5), 4.51 (t, 1H, J=8.0 Hz, H-4), 4.85 (br, 2H, Nap), 4.93 (d, 1H, J=10.0 Hz, Bn), 5.07 (d, 1H, J=10.0 Hz, Bn), 5.67 (d, 1H, J=1.0 Hz, H-1), 5.79 (s, 1H, PhCH), 7.34-7.44 (m, 6H), 7.47-7.52 (m, 7H), 7.55-7.58 (m, 3H), 7.68-7.69 (m, 2H), 7.83-7.85 (m, 1H), 7.90-7.94 (m, 3H); 13C-NMR (125 MHz, CDCl3): δ65.4, 68.4, 72.8, 72.9, 76.1, 77.9, 78.9, 86.9, 101.5, 125.5, 125.7, 125.9, 126.1 (×2), 127.5 (×2), 127.7, 127.8, 128.0, 128.1, 128.3, 128.8, 129.0, 131.5, 132.8, 133.2, 133.6, 135.7, 137.5, 137.6.
After the donor 6 (500 mg, 0.85 mmol) and activated molecular sieve MS-4 Å (500 mg) were stirred for 30 minutes at room temperature in DCM (20 mL), the solution was cooled to −60° C., followed by addition of 1-benzenesulfinyl piperidine (190 mg, 0.89 mmol) and 2,4,6-Tri-tert-butylpyrimidine (0.42 g, 1.7 mmol). The mixture was stirred for 5 minutes at −60° C. and then Tf2O (0.15 mL, 0.89 mmol) was added. The mixture was vigorously stirred for 10 minutes at −60° C., followed by addition of a solution of acceptor 7 (544 mg, 0.81 mmol) in DCM (5 mL). The reaction mixture was stirred for 1 hour at −60° C. and then was quenched with Et3N (1 mL). The mixture was diluted with DCM (150 mL), washed with a saturated aqueous solution of NaHCO3, H2O and then dried over Na2SO4, filtered and concentrated. Silica gel column chromatography (15:1:1 hexanes-EtOAc-DCM) afforded 8 as a white solid (690 mg, 70%). 1H-NMR (500 MHz, CDCl3): δ0.19-0.23 (m, 6H, TDS), 0.90-0.94 (m, 12H, TDS), 1.66-1.71 (m, 1H, TDS), 3.21-3.25 (m, 1H, H-6b), 3.29-3.34 (m, 1H, H-2), 3.47-3.49 (m, 1H, H-6b′), 3.55-3.63 (m, 2H, H-3′, H-6a′), 3.65-3.70 (m, 2H, H-5′, H-6a), 3.88-3.89 (m, 1H, H-2′), 3.92-3.97 (m, 1H, H-5), 4.01-4.04 (m, 1H, H-3), 4.17-4.24 (m, 2H, H-4, H-4′), 4.44 (d, 1H, J=12.0 Hz, Bn), 4.59-4.67 (m, 3H, H-1′, Bn), 4.72 (br, 2H, Troc), 4.80 (d, 1H, J=12.0 Hz, Bn), 4.92 (d, 1H, J=12.0 Hz, Bn), 4.97-4.98 (m, 3H, H-1, Nap), 5.10 (d, 1H, J=12.0 Hz, Bn), 5.17 (br, 1H, NH), 5.63 (s, 1H, PhCH), 7.23-7.41 (m, 13H), 7.42-7.58 (m, 10H), 7.73-7.75 (m, 1H), 7.84-7.90 (m, 3H); 13C-NMR (75 MHz, CDCl3): δ-3.4, −1.9, 18.5, 18.6, 20.0, 20.1, 24.8, 34.0, 59.6, 67.4, 68.6, 68.9, 72.4, 73.5, 74.2, 74.5, 74.7, 75.0, 76.6, 78.2, 78.3, 78.7, 95.2, 95.4, 101.4, 101.7, 125.5, 125.8, 126.0, 126.1, 126.2, 126.9, 127.1, 127.4, 127.5, 127.6 (×2), 127.7, 127.8 (×2), 127.9 (×2), 128.0, 128.1, 128.2 (×2), 128.3 (×2), 128.4, 128.9, 132.9, 133.3, 135.9, 137.7, 137.8, 138.6, 138.9, 153.8. gHMQC (without 1H decoupling): 1JC1,H1=160.5 Hz, 157.5 Hz.
Compound 8 (4.5 g, 3.88 mmol) was dissolved in pyridine (68 mL). The mixture was cooled to 0° C., followed by addition of HF (34 mL, 65-70% in pyridine). The mixture was stirred at room temperature overnight and then was diluted in EtOAc (200 mL), washed with 10% of CuSO4, saturated aqueous NaHCO3 and H2O. The organic layer was dried over Na2SO4, filtered and concentrated. Silica gel column chromatography (2:1 hexane-EtOAc) afforded the corresponding hemiacetal as a white solid (3.94 g, 99%). The mixture of the obtained solid (3.9 g, 3.84 mmol), N-phenyltrifluoroacetimidoyl chloride (3.1 mL, 19.2 mmol) and DCM (150 mL) was cooled down to 0° C. DBU (0.58 mL, 3.84 mmol) was added and the mixture was stirred at room temperature for 1 hour. The mixture was concentrated. Silica gel column chromatography (4:1 hexanes-EtOAc) afforded the corresponding imidate 10 as a white solid (3.9 g, 86%). Imidate donor 10 (1.9 g, 1.6 mmol), acceptor 11 (950 mg, 1.52 mmol), molecular sieve MS-4 Å and DCM (120 mL) were stirred at room temperature for 30 min. The mixture was cooled to −70° C., followed by addition of TfOH (28 μL, 0.32 mmol). The reaction mixture was stirred for 1 hour from −70 to −20° C. and then was quenched with Et3N (0.1 mL). The mixture was diluted with DCM (200 mL), washed with a saturated aqueous solution of NaHCO3, H2O and then dried over Na2SO4, filtered and concentrated. Silica gel column chromatography (3:1:1 hexanes-EtOAc-DCM) afforded 12 as a white solid (2.4 g, 92%). 1H-NMR (500 MHz, CDCl3): δ3.16-3.21 (m, 1H), 3.29-3.31 (m, 1H), 3.38-3.40 (m, 1H), 3.48-3.55 (m, 3H), 3.58-3.71 (m, 4H), 3.75-3.78 (m, 2H), 3.88-3.92 (m, 2H), 4.03-4.07 (m, 1H), 4.10-4.20 (m, 2H), 4.23-4.26 (m, 2H), 4.42-4.49 (m, 2H), 4.52-4.54 (m, 2H, H-1″), 4.59-4.74 (m, 8H, H-1, H-1′), 4.82-4.90 (m, 3H), 4.94-5.07 (m, 5H), 5.13-5.17 (m, 2H), 5.64 (s, 1H, PhCH), 7.21-7.62 (m, 38H), 7.77-7.79 (m, 1H), 7.88-7.93 (m, 3H); 13C-NMR (75 MHz, CDCl3): δ56.6, 57.3, 60.3, 67.2, 67.9, 68.3, 68.5, 70.4, 72.2, 72.6, 73.2 (×2), 73.4, 73.9, 74.2, 74.3, 74.9, 76.5, 76.6, 77.5, 77.8, 78.0, 78.5, 78.6, 79.4, 95.4, 95.5, 99.5, 100.3, 101.3, 101.4, 125.3, 125.8, 125.9 (×2), 126.0 (×2), 126.3, 126.6, 127.2, 127.3, 127.5 (×3), 127.6 (×2), 127.7 (×2), 127.9, 128.0, 128.1 (×2), 128.2, 128.3, 128.4, 128.6, 128.8, 128.9, 132.8, 133.1, 135.8, 137.2, 137.5 (×2), 137.8, 138.4, 138.5, 138.6, 138.8, 153.8, 153.9. gHMQC (without 1H decoupling): 1JC1,H1=162.5 Hz, 159.8 Hz, 164.6 Hz.
Compound 12 (1.6 g, 0.99 mmol) was dissolved in a mixture of DCM/H2O (35 mL/3.5 mL) and the solution was cooled to 0° C. 2,3-Dichloro-5,6-dicyano-p-benzoquinone (0.27 g, 1.19 mmol) was added to the solution and the mixture was stirred at room temperature for 3 h. The mixture was filtered, diluted with DCM (100 mL) and the organic phase was washed with H2O until the solution became colorless. Silica gel column chromatography (3:2 hexanes-EtOAc) afforded compound 13 as a white solid (1.07 g, 73%). 1H-NMR (500 MHz, CDCl3): δ2.44 (d, 1H, J=8.5 Hz), 3.08-3.13 (m, 1H), 3.23-3.25 (m, 1H), 3.32-3.34 (m, 1H), 3.44-3.65 (m, 7H), 3.71-3.77 (m, 4H), 3.85-3.87 (m, 1H), 4.01-4.12 (m, 3H), 4.33-4.39 (m, 2H), 4.46-4.56 (m, 4H, H-1″), 4.61-4.70 (m, 7H, H-1, H-1′), 4.73-4.84 (m, 3H), 4.93-5.01 (m, 2H), 5.06-5.09 (m, 3H), 5.48 (s, 1H, PhCH), 7.20-7.47 (m, 33H), 7.50-7.52 (m, 2H); 13C-NMR (75 MHz, CDCl3): δ56.8, 57.3, 66.8, 68.0, 68.3, 68.5, 70.6, 70.8 73.5 (×2), 74.1, 74.2, 74.3, 74.4, 75.6, 77.9, 78.6, 78.8, 79.0, 79.6, 95.4, 95.6, 99.5, 100.3, 101.6, 101.9, 126.2, 127.3, 127.4 (×2), 127.6, 127.7, 127.8, 127.9 (×2), 128.0, 128.1, 128.2 (×2), 128.3, 128.5 (×2), 128.7, 128.9, 129.1, 137.2 (×2), 137.5, 137.9, 138.1, 138.7 (×2), 153.9 (×2).
Pentaacetylated Mannose 70 (20 g, 51.2 mmol) and p-methoxylphenol (7.3 g, 58.9 mmol) were dissolved in DCM (200 mL). The mixture was cooled down to 0° C., followed by addition of Boron trifluoride diethyl etherate (19.3 ml, 153.7 mmol). The mixture was stirred at room temperature overnight and then diluted with dichloromethane (300 mL). The resulting solution was washed with saturated aqueous solution of NaHCO3 and water and then dried over Na2SO4, filtered and concentrated to dryness. Silica gel column chromatography (3:2 hexanes-EtOAc) afforded compound 71 as white solid (21.1 g, 90%). 1H-NMR (500 MHz, CDCl3): δ2.03 (s, 3H, COCH3), 2.04 (s, 3H, COCH3), 2.06 (s, 3H, COCH3), 2.19 (s, 3H, COCH3), 3.76 (s, 3H, MP), 4.08-4.10 (m, 1H, H-5), 4.13-4.16 (m, 1H, H-6b), 4.26-4.30 (m, 1H, H-6a), 5.36 (t, 1H, J=10.0 Hz, H-4), 4.42 (d, 1H, J=1.5 Hz, H-1), 5.43-5.45 (m, 1H, H-2), 5.54 (dd, 1H, J=10.0 Hz, 3.5 Hz, H-3), 6.81-6.84 (m, 2H), 7.01-7.04 (m, 2H); 13C-NMR (75 MHz, CDCl3): δ20.4 (×2), 20.6, 55.3, 62.0, 65.8, 68.7, 68.8, 69.2, 96.4, 114.4, 117.6, 149.4, 155.2, 169.5, 169.6, 169.7, 170.2; gHMQC (without 1H decoupling): 1JC1,H1=179.1 Hz.
71 (11 g, 24.2 mmol) was dissolved in a mixture of DCM/MeOH (100 mL each) and NaOMe (30%, 5.4 mL, 96.8 mmol) was added to the solution at room temperature. The mixture was stirred for 2 h at room temperature under N2 and then the mixture was neutralized by conc. HCl until the pH was around 4. The mixture was concentrated and dried under vacuum. The mixture of the obtained compound (6.7 g, 23.4 mmol), camphorsulfonic acid (1.09 g, 4.68 mmol) and benzaldehyde dimethylacetal (3.86 mL, 25.7 mmol) in DMF (80 mL) was stirred at 70° C. overnight and then quenched by Et3N (5 mL). The mixture was concentrated to dryness under vacuum and then was diluted with DCM (500 mL). The mixture was washed with a saturated aqueous solution of NaHCO3, water, and then the organic layer was dried over Na2SO4, filtered and concentrated. Silica gel column chromatography (2:1 hexane-EtOAc) afforded compound 72 as a white solid (4.68 g, 52% for 2 steps). Compound 72 (3.6 g, 9.62 mmol), di-butyltin oxide (2.5 g, 10.1 mmol) and Toluene (100 mL) were refluxed for 3 h, followed by removal of solvent under vacuo. The mixture of the resulting solid, cesium fluoride (1.53 g, 10.1 mmol), Benzyl bromide (1.2 mL, 10.1 mmol) and DMF (50 mL) was stirred at room temperature overnight. DMF was removed by vacuum and the mixture was diluted with DCM (200 mL). The mixture was washed with saturated aqueous solution of NaHCO3, water and then dried over Na2SO4, filtered and concentrated. Silica gel column chromatography (3:1 hexanes-EtOAc) afforded compound 73 as white solid (3.8 g, 86%). 1H-NMR (500 MHz, CDCl3): δ3.26 (br, 1H, 2-OH), 3.81 (s, 3H, MP), 3.81-3.97 (m, 1H, H-4), 4.03-4.08 (m, 1H, H-3), 4.16-4.18 (m, 1H, H-5), 4.21-4.22 (m, 1H, H-2), 4.25-4.28 (m, 2H, H-6a, H-6b), 4.82 (d, 1H, J=12.0 Hz, Bn), 4.98 (d, 1H, J=12.0 Hz, Bn), 5.51 (br, 1H, H-1), 5.68 (s, 1H, PhCH), 6.88-6.90 (m, 2H), 7.02-7.04 (m, 2H), 7.34-7.47 (m, 8H), 7.57-7.58 (m, 2H); 13C-NMR (75 MHz, CDCl3): δ 55.5, 63.9, 68.6, 69.8, 73.2, 75.5, 78.7, 98.8, 101.5, 114.6, 117.6, 126.0, 127.8, 127.9, 128.1, 128.4, 128.8, 137.4, 137.9, 149.7, 155.0.
The mixture of compound 73 (1.85 g, 3.98 mmol), Allyl chloroformate (0.51 mL, 4.78 mmol), Tetramethylethylenediamine (0.89 mL, 5.97 mmol) and DCM (50 mL) were stirred at room temperature for 4 h and then was diluted with DCM (200 mL). The organic layer was washed with saturated aqueous solution of NaHCO3, water and then dried over Na2SO4, filtered and concentrated. Silica gel column chromatography (2:1 hexanes-EtOAc) afforded compound 74 as white solid (2.01 g, 92%). 1H-NMR (500 MHz, CDCl3): δ3.80 (br, 3H, MP), 3.90 (t, 1H, J=10.0 Hz, H-4), 4.08-4.12 (m, 1H, H-3), 4.23-4.32 (m, 3H, H-5, H-6a, H-6b), 4.72 (d, 2H, J=5.5 Hz, Alloc), 4.86 (br, 2H, Alloc), 5.33 (d, 1H, J=10.5 Hz, Bn), 5.44 (d, 1H, J=10.5 Hz, Bn), 5.49 (m, 1H, H-2), 5.58 (br, 1H, H-1), 5.69 (s, 1H, PhCH), 5.96-6.04 (m, 1H, Alloc), 6.88-6.90 (m, 2H), 7.03-7.05 (m, 2H), 7.33-7.48 (m, 8H), 7.57-7.58 (m, 2H); 13C-NMR (75 MHz, CDCl3): δ55.5, 64.4, 68.4, 68.9, 72.4, 75.5, 73.7, 78.1, 97.5, 101.5, 114.6, 117.8, 119.1, 126.0, 127.5 (×2), 128.1, 128.2, 128.8, 131.2, 137.3, 138.0, 149.5, 154.4, 155.3.
Compound 74 (0.7 g, 1.27 mmol) was dissolved in DCM (50 mL) and the solution was cooled down to −78° C., followed by sequential addition of Triethylsilane (0.31 mL, 1.91 mmol) and Dichlorophenylborane (0.28 mL, 2.16 mmol). The mixture was stirred at −78° C. for 1 h and then quenched by MeOH/Et3N (0.5 mL/each). The resulting mixture was washed by saturated aqueous NaHCO3 and H2O and concentrated. Silica gel chromatography (2:1 hexanes-EtOAc) afforded compound 75 (0.61 g, 87%). 1H-NMR (500 MHz, CDCl3): δ2.05 (t, 1H, J=6.5 Hz, 6-OH), 3.78 (br, 3H, MP), 3.82-3.83 (m, 2H, H-6a, H-6b), 3.88-3.90 (m, 1H, H-5), 4.01 (t, 1H, J=10.0 Hz, H-4), 4.24 (dd, 1H, J=8.5 Hz, 3.0 Hz, H-3), 4.68-4.72 (m, 4H, Alloc), 4.87 (d, 1H, J=11.0 Hz, Bn), 4.98 (d, 1H, J=11.0 Hz, Bn), 5.30 (d, 1H, J=11.0 Hz, Bn), 5.39-5.43 (m, 2H, H-2, Bn), 5.55 (br, 1H, H-1), 5.93-6.01 (m, 1H, Alloc), 6.84-6.86 (m, 2H), 6.99-7.01 (m, 2H), 7.27-7.44 (m, 10H); 13C-NMR (75 MHz, CDCl3): δ 55.5, 61.8, 68.9, 72.0, 72.3, 72.6, 73.9, 75.4, 77.8, 96.8, 114.6, 117.9, 119.2, 127.7, 127.8, 127.9, 128.0, 128.3, 128.4, 131.3, 137.9, 138.2, 149.6, 154.5, 155.3.
75 (0.49 g, 0.89 mmol) was dissolved in DCM (20 mL), followed by addition of levulinoyl acid (0.13 g, 1.25 mmol), N-(3-Dimethylaminopropyl)-N′-ethylcarbodiimide hydrochloride (0.27 g, 1.42 mmol) and 4-(Dimethylamino)pyridine (11 mg, 0.09 mmol). The mixture was stirred at room temperature overnight and then was diluted with DCM (100 mL). The organic phase was washed with saturated NaHCO3 and then dried over Na2SO4, filtered and the solvents were removed in vacuum. Silica gel column chromatography (3:1 hexanes-EtOAc) afforded compound 76 as white solid (0.56 g, 96%). 1H-NMR (500 MHz, CDCl3): δ2.19 (s, 3H, Lev), 2.57-2.61 (m, 2H, Lev), 2.67-2.77 (m, 2H, Lev), 3.80 (br, 3H, MP), 4.89 (t, 1H, J=10.0 Hz, H-4), 4.01-4.04 (m, 1H, H-5), 4.24 (dd, 1H, J=9.5 Hz, 3.0 Hz, H-3), 4.32-4.38 (m, 2H, H-6a, H-6b), 4.63-4.71 (m, 4H, Alloc), 4.86 (d, 1H, J=11.0 Hz, Bn), 4.97 (d, 1H, J=11.0 Hz, Bn), 5.31 (d, 1H, J=10.5 Hz, Bn), 5.39-5.43 (m, 2H, H-2, Bn), 5.55 (br, 1H, H-1), 5.94-6.02 (m, 1H, Alloc), 6.84-6.87 (m, 2H), 7.00-7.03 (m, 2H), 7.29-7.43 (m, 10H); 13C-NMR (75 MHz, CDCl3): δ27.9, 29.7, 378, 55.6, 63.1, 68.9, 70.3, 72.0, 72.2, 73.8, 75.3, 77.9, 96.5, 114.6, 117.8, 119.2, 127.8 (×2), 127.9, 128.1, 128.4 (×2), 131.3, 137.7, 137.9, 149.7, 154.5, 155.2, 172.3, 206.4.
77 (1.65 g, 2.83 mmol) was dissolved in a mixture of DCM/MeOH (20 mL each) and NaOMe (30%, 0.32 mL, 5.66 mmol) was added to the solution at room temperature. The mixture was stirred for 2 h at room temperature under N2 and was neutralized with conc.HCl until the pH was around 7 and then the mixture was concentrated. Silica gel column chromatography (3:1 hexanes-EtOAc) afforded compound 78 as white solid (1.49 g, 97%). 1H-NMR (500 MHz, CDCl3): δ2.45 (s, 1H, 2-OH), 3.63-3.65 (m, 1H, H-6b), 3.70-3.75 (m, 2H, H-5, H-6a), 3.83-3.88 (m, 2H, H-4, All), 3.90-3.94 (m, 1H, H-3), 4.00 (br, 1H, H-2), 4.09-4.13 (m, 1H, All), 4.43 (d, 1H, J=12.0 Hz, Bn), 4.57-4.66 (m, 4H, Bn, Nap), 4.89-4.91 (m, 2H, H-1, Nap), 4.09-5.11 (m, 1H, All), 5.17-5.21 (m, 1H, All), 5.77-5.85 (m, 1H, All), 7.15-7.29 (m, 11H), 7.36-7.39 (m, 2H), 7.53 (br, 1H), 7.66-7.68 (m, 2H), 7.72-7.74 (m, 1H); 13C-NMR (75 MHz, CDCl3): δ68.0, 68.4, 68.9, 71.1, 72.0, 73.4, 74.3, 75.2, 80.3, 98.4, 117.5, 119.2, 125.8, 126.0 (×2), 126.5, 127.6 (×2), 127.8, 127.9 (×2), 128.0 128.3, 128.5, 132.9, 133.3, 133.7, 135.8, 137.9, 138.2.
78 (0.82 g, 1.52 mmol) was dissolved in DCM (30 mL). 9-Fluorenylmethoxycarbonyl chloride (0.78 g, 3.04 mmol) and pyridine (1.22 mL, 15.2 mmol) were added sequentially and the mixture was stirred for 4 h at room temperature under N2. The mixture was diluted with DCM (100 mL) and the organic phase was washed with saturated NaHCO3 and then dried over Na2SO4, filtered and the solvents were removed in vacuum. Silica gel column chromatography (7:1 hexanes-EtOAc) afforded compound 79 as white solid (0.98 g, 84%). 1H-NMR (500 MHz, CDCl3): δ3.87-3.89 (m, 1H, H-6b), 3.95-4.03 (m, 2H, H-5, H-6a), 4.11-4.22 (m, 3H, H-3, H-4, All), 4.30-4.38 (m, 2H, Fmoc, All), 4.42-4.45 (m, 1H, Fmoc), 4.54-4.57 (m, 1H, Fmoc), 4.64 (d, 1H, J=12.0 Hz, Bn), 4.72 (d, 1H, J=12.0 Hz, Bn), 4.79-4.83 (m, 2H, Bn, Nap), 4.90 (d, 1H, J=11.5 Hz, Bn), 5.15-5.18 (m, 2H, H-1, Nap), 5.31 (d, 1H, J=10.0 Hz, All), 5.37-5.41 (m, 2H, H-2, All), 5.96-6.04 (m, 1H, All), 7.27-7.49 (m, 15H), 7.53-7.57 (m, 2H), 7.72-7.77 (m, 3H), 7.84-7.86 (m, 4H), 7.89-7.91 (m, 1H); 13C-NMR (75 MHz, CDCl3): δ46.6, 68.1, 68.9, 70.2, 71.6, 71.8, 72.7, 73.4, 74.4, 75.3, 78.3, 96.6, 117.8, 119.9, 120.0, 125.2, 125.4, 125.8, 125.9, 126.5, 127.1, 127.5, 127.6 (×2), 127.7, 127.8, 127.9, 128.0, 128.2, 128.3, 132.9, 133.2, 133.3, 135.8, 137.9, 138.2, 141.1, 141.2, 143.2, 143.5, 154.8.
79 (1.66 g, 2.18 mmol) was dissolved in a mixture of DCM/MeOH/H2O (20 mL/20 mL/1 mL). NaOAc (1.07 g, 13.1 mmol) and PdCl2 (0.77 g, 4.36 mmol) were added to the solution at room temperature. The mixture was stirred at room temperature under N2 overnight and then was concentrated to dryness. The residue was diluted with DCM (200 mL) and the organic phase was washed with H2O and then dried over Na2SO4, filtered and the solvents were removed in vacuum. Silica gel column chromatography (3:1 hexanes-EtOAc) afforded the corresponding hemiacetal 80 as a colorless gel (1.2 g, 76%). The mixture of the obtained solid (1.2 g, 1.66 mmol), N-phenyltrifluoroacetimidoyl chloride (1.35 mL, 8.3 mmol) and DCM (80 mL) was cooled down to 0° C. NaH (60%, 66 mg, 1.66 mmol) was added and the mixture was stirred at room temperature for 1 h. The mixture was concentrated. Silica gel column chromatography (8:1 hexanes-EtOAc) afforded the corresponding imidate 14 as a white solid (1.3 g, 88%).
The obtained imidate 14 (97 mg, 0.11 mmol), acceptor 13 (80 mg, 0.055 mmol), molecular sieve MS-4 Å and DCM (10 mL) was stirred at room temperature for 30 min. The mixture was cooled to −60° C., followed by addition of TfOH (1.9 μL, 0.022 mmol). The reaction mixture was stirred for 1 hour from −60 to −20° C. and then was quenched with solid NaHCO3 (20 mg). The mixture was diluted with DCM (50 mL), washed with a saturated aqueous solution of NaHCO3, H2O and then dried over Na2SO4, filtered and concentrated. Silica gel column chromatography (4:1:1 hexanes-EtOAc-DCM) afforded 15 as a white solid (110 mg, 90%). 1H-NMR (500 MHz, CDCl3): δ2.88-2.93 (m, 1H), 3.07-3.09 (m, 1H), 3.16-3.18 (m, 1H), 3.29-3.42 (m, 4H), 3.44-3.49 (m, 2H), 3.55-3.64 (m, 3H), 3.70-3.72 (m, 4H), 3.78-3.81 (m, 1H), 3.83-3.98 (m, 6H), 4.10-4.15 (m, 3H), 4.17-4.23 (m, 1H), 4.26-4.36 (m, 4H), 4.38-4.48 (m, 6H), 4.52-4.70 (m, 9H), 4.73-4.83 (m, 4H), 4.90-4.92 (m, 2H), 4.97-5.00 (m, 1H), 5.33-5.34 (m, 2H), 5.40 (s, 1H, PhCH), 7.03-7.27 (m, 42H), 7.30-7.41 (m, 10H), 7.50-7.55 (m, 3H), 7.64-7.69 (m, 4H), 7.73-7.76 (m, 1H); 13C-NMR (75 MHz, CDCl3): δ 13.6, 20.9, 46.4, 56.7, 57.3, 60.3, 64.2, 66.8, 67.9, 68.2, 68.3, 69.1, 70.1, 70.5, 71.5, 72.1, 72.3, 73.2, 73.4, 73.5, 74.0, 74.1, 74.2, 74.3, 74.5, 75.2, 75.3, 75.5, 77.3, 77.4, 77.8, 78.3, 78.5, 78.6, 79.4, 95.4, 95.5, 98.3, 99.5, 100.3, 101.0, 101.1, 119.9 (×2), 125.1, 125.3, 125.8 (×2), 125.9, 126.0, 126.4, 127.1, 127.3, 127.4, 127.5, 127.6 (×2), 127.7 (×3), 127.8, 127.9 (×2), 128.0, 128.1, 128.2 (×2), 128.3 (×2), 128.5, 128.7, 128.9, 132.8, 133.1, 135.8, 137.1, 137.2, 137.6, 137.7, 137.8, 138.0, 138.3, 138.6, 138.7, 141.1 (×2), 143.2, 143.4, 153.8, 153.9, 154.5. gHMQC (without 1H decoupling): 1JC1,H1=163.6, 163.4, 161.9, 176.6 Hz.
Compound 15 (100 mg, 45.7 μmol) was dissolved in DCM (8 mL) and the solution was cooled down to −78° C., followed by sequential addition of Triethylsilane (11 μL, 68.56 μmol) and Dichlorophenylborane (10.2 μL, 77.7 μmol). The mixture was stirred at −78° C. for 40 minutes and then quenched with solid NaHCO3 and MeOH. The resulting mixture was washed by saturated aqueous NaHCO3 and H2O and concentrated. Silica gel chromatography (3:1:1 hexanes-EtOAc-DCM) afforded compound 16 (85.1 mg, 85%). 1H-NMR (500 MHz, CDCl3): δ 3.02-3.03 (m, 1H), 3.17-3.22 (m, 2H), 3.36-3.38 (m, 1H), 3.43-3.47 (m, 2H), 3.51-3.78 (m, 10H), 3.85-4.07 (m, 8H), 4.27-4.34 (m, 4H), 4.38-4.49 (m, 4H), 4.51-4.68 (m, 11H), 4.71-4.81 (m, 4H), 4.83-4.97 (m, 4H), 5.02-5.11 (m, 4H), 5.35-5.38 (m, 2H), 7.18-7.42 (m, 44H), 7.44-7.54 (m, 8H), 7.65-7.70 (m, 3H), 7.78-7.84 (m, 4H), 7.87-7.89 (m, 1H); 13C-NMR (75 MHz, CDCl3): δ 14.1, 21.0, 46.5, 56.7, 57.3, 60.3, 61.7, 68.0, 68.3, 69.2, 70.3, 70.6, 71.8, 72.5, 72.6, 73.3, 73.4, 73.6, 74.1 (×2), 74.3, 74.4, 74.6, 74.8, 74.9, 75.1, 75.6, 76.6, 77.5, 77.6, 77.9, 78.1, 78.6, 79.7, 80.4, 95.5 (×2), 99.3, 99.6, 100.5 (×2), 120.0 (×2), 125.2, 125.4, 125.8, 125.9, 126.0, 126.3, 126.9, 127.0, 127.1, 127.3, 127.5 (×2), 127.6, 127.7 (×2), 127.8 (×2), 127.9 (×2), 128.1, 128.2 (×2), 128.3 (×2), 128.4, 128.5, 128.7, 128.8, 129.1, 132.9, 133.2, 133.9, 135.8, 137.2, 137.6, 137.7, 137.8 (×2), 138.0, 138.6 (×2), 138.7, 141.2 (×2), 143.2, 143.5, 154.1, 154.6.
76 (1.0 g, 1.54 mmol) was dissolved in a mixture of CH3CN//H2O (30 mL/7.5 mL). Ceric ammonium nitrate (2.54 g, 4.62 mmol) was added to the solution at 0° C. and then the mixture was stirred at room temperature under N2 for 2 h. The mixture was concentrated to dryness and the residue was diluted with DCM (100 mL) and the organic phase was washed with H2O and then dried over Na2SO4, filtered and the solvents were removed in vacuum. Silica gel column chromatography (3:2 hexanes-EtOAc) afforded the corresponding hemiacetal. The compound obtained (0.74 g, 1.36 mmol), N-phenyltrifluoroacetimidoyl chloride (1.1 mL, 6.8 mmol) and DCM (70 mL) were cooled down to 0° C. NaH (60%, 54 mg, 1.36 mmol) was added and the mixture was stirred at room temperature for 1 h, concentrated and purified via Silica gel column chromatography (4:1 hexanes-EtOAc) to afforded the corresponding imidate 17 as a white solid (790 mg, 72% for 2 steps). Imidate 17 (0.65 g, 0.91 mmol), tetrasaccharide acceptor 16 (1.0 g, 0.46 mmol), molecular sieve MS-4 Å and DCM (120 mL) were stirred at room temperature for 30 min. The mixture was cooled to −60° C., followed by addition of TfOH (16.1 μL, 0.18 mmol). The reaction mixture was stirred for 1 hour from −60 to −20° C. and then was quenched with solid NaHCO3. The mixture was diluted with DCM (100 mL), washed with a saturated aqueous solution of NaHCO3, H2O and then dried over Na2SO4, filtered and concentrated. Silica gel column chromatography (2.5:1:1 hexanes-EtOAc-DCM) afforded pentasaccharide 1 as a white solid (1.1 g, 89%). 1H-NMR (500 MHz, CDCl3): δ 2.02 (s, 3H, Lev), 2.37-2.40 (m, 2H, Lev), 2.51-2.55 (m, 2H, Lev), 3.01-3.08 (m, 2H), 3.20-3.24 (m, 1H), 3.29-3.34 (m, 3H), 3.44-3.65 (m, 12H), 3.75-3.89 (m, 7H), 3.94-4.05 (m, 3H), 4.13-4.22 (m, 5H), 4.27-4.61 (m, 24H), 4.65-4.68 (m, 1H), 4.72-4.80 (m, 5H), 4.89-4.98 (m, 4H), 5.06 (br, 1H), 5.13 (d, 1H, J=10.5 Hz), 5.18-5.24 (m, 3H), 5.72-5.80 (m, 1H, Alloc), 7.01-7.25 (m, 56H), 7.31-7.40 (m, 6H), 7.52-7.57 (m, 3H), 7.64-7.71 (m, 4H), 7.74-7.76 (m, 1H); 13C-NMR (75 MHz, CDCl3): δ 14.1, 27.8, 29.7, 37.8, 46.5, 48.6, 52.4, 56.4, 57.4, 60.3, 63.1, 66.6, 68.1, 68.4, 68.6, 69.2, 69.9, 70.3, 70.5, 71.3, 71.8, 71.9, 72.5, 72.6, 73.2, 73.4, 73.7, 74.3, 74.1, 74.2, 74.3 (×2), 74.5, 74.8, 75.1 (×2), 76.3, 77.3, 77.7, 78.0, 78.1, 78.6, 81.1, 95.5, 95.6, 97.4, 99.3, 99.5 (×2), 100.3, 101.3, 118.9, 119.9, 120.0 (×2), 125.1, 125.4, 125.8, 125.9, 126.0, 126.3, 127.1, 127.3, 127.4, 127.5, 127.6, 127.7 (×3), 127.8, 127.9, 128.0 (×2), 128.2 (×3), 128.3 (×3), 128.4, 128.5 (×2), 131.4, 132.9, 133.2, 135.8, 137.2, 137.7, 137.8, 137.9, 138.0, 138.2, 138.6, 138.8, 139.0, 141.2 (×2), 143.2, 143.5, 153.8 (×2), 154.2, 154.6, 171.1, 206.5. gHMQC (without 1H decoupling): 1JC1,H1=158.3, 162.0, 165.5, 169.3, 171.4 Hz.
Pentasaccharide 1 (20 mg, 7.37 μmmol) was dissolved in DCM (2 mL). Et3N (0.5 mL) was added to the solution and then the mixture was stirred at room temperature under N2 for 4 h. The mixture was concentrated to dryness and then the residue was co-evaporated with toluene (3×5 mL). The solvents were removed in vacuum. Silica gel column chromatography (1.5:1:1 hexanes-EtOAc-DCM) afforded compound 18 (17.3 mg, 94%). 1H-NMR (600 MHz, CDCl3): δ 2.04 (s, 3H, Lev), 2.31 (br, 1H, OH), 2.38-2.40 (m, 2H, Lev), 2.49-2.56 (m, 2H, Lev), 2.99-3.01 (m, 1H), 3.06-3.08 (m, 1H), 3.18-3.21 (m, 1H), 3.28-3.44 (m, 3H), 3.44-3.50 (m, 4H), 3.53-3.65 (m, 8H), 3.72-3.89 (m, 9H), 3.98-4.00 (m, 1H), 4.03-4.05 (m, 1H), 4.18-4.22 (m, 3H), 4.25-4.27 (m, 1H), 4.43-4.41 (m, 7H), 4.43-4.62 (m, 16H), 4.73-4.80 (m, 5H), 4.89-4.95 (m, 4H), 5.06 (br, 1H), 5.13 (d, 1H, J=10.8 Hz), 5.23 (d, 1H, J=11.4 Hz), 5.75-5.80 (m, 1H, Alloc), 7.00-7.03 (m, 1H), 7.07-7.26 (m, 53H), 7.36-7.41 (m, 4H), 7.53 (br, 1H), 7.64-7.69 (m, 2H), 7.74-7.76 (m, 1H); 13C-NMR (75 MHz, CDCl3): δ 14.1, 27.8, 29.7, 37.8, 46.5, 48.6, 52.4, 56.4, 57.4, 60.3, 63.1, 66.6, 68.1, 68.4, 68.6, 69.2, 69.9, 70.3, 70.5, 71.3, 71.8, 71.9, 72.5, 72.6, 73.2, 73.4, 73.7, 74.3, 74.1, 74.2, 74.3 (×2), 74.5, 74.8, 75.1 (×2), 76.3, 77.3, 77.7, 78.0, 78.1, 78.6, 81.1, 95.5, 95.6, 97.4, 99.3, 99.5, 100.3, 101.4 (×2), 119.0, 125.8, 125.9, 126.0, 126.3, 127.2, 127.3 (×2), 127.4 (×2), 127.5 (×2), 127.7 (×3), 127.8 (×2), 127.9 (×2), 128.0, 128.1 (×2), 128.2, 128.3 (×2), 128.4, 128.5 (×2), 128.6 (×2), 128.7, 131.4, 132.9, 133.2, 135.9, 137.3, 137.8 (×3), 137.9, 138.0, 138.2, 138.9, 139.0, 153.9 (×2), 154.3, 172.3, 206.6.
Pentasaccharide 1 (30 mg, 11.1 μmol) was dissolved in a mixture of DCM//H2O (3 mL/0.3 mL) and the solution was cooled to 0° C. DDQ (3.0 mg, 13.3 μmol) was added to the solution and the mixture was stirred at room temperature under N2 for 3 h. The mixture was diluted with DCM (30 mL) and the organic phase was washed with H2O until the solution became colorless. The organic phase was dried over Na2SO4, filtered and the solvents were removed in vacuum. Silica gel column chromatography (2.5:1:1 hexanes-EtOAc-DCM) afforded compound 19 (24.6 mg, 86%). 1H-NMR (600 MHz, CDCl3): δ 2.03 (s, 3H, Lev), 2.38 (br, 1H, OH), 2.39-2.40 (m, 2H, Lev), 2.51-2.56 (m, 2H, Lev), 2.99-3.01 (m, 1H), 3.06-3.07 (m, 1H), 3.20-3.23 (m, 1H), 3.29-3.33 (m, 3H), 3.43-3.45 (m, 1H), 3.47-3.53, (m, 3H), 3.55-3.65 (m, 7H), 3.68-3.71 (m, 2H), 3.76-3.79 (m, 2H), 3.81-3.89 (m, 5H), 3.96-4.05 (m, 2H), 4.12-4.21 (m, 5H), 4.28-4.54 (m, 21H), 4.60-4.70 (m, 3H), 4.73-4.82 (m, 5H), 4.91-4.96 (m, 3H), 5.07 (br, 1H), 5.12-5.23 (m, 4H), 5.74-5.79 (m, 1H, Alloc), 7.01-7.06 (m, 3H), 7.11-7.28 (m, 52H), 7.32-7.38 (m, 4H), 7.50-7.54 (m, 2H), 7.70-7.71 (m, 1H); 13C-NMR (125 MHz, CDCl3): δ 27, 29.7, 37.9, 46.6, 57.4, 63.2, 66.6, 67.2, 68.1, 68.4, 68.7, 69.9, 70.1, 70.4, 70.5, 71.3, 71.7, 71.8, 71.9, 72.3, 73.2, 73.5, 73.6, 73.7, 73.8, 74.4, 74.5 (×2), 74.6, 74.8 75.2, 77.4, 77.8, 78.1, 78.2, 78.6, 81.1, 95.6, 97.5, 99.5, 99.6, 100.3, 101.3, 104.3, 119.0, 120.0 (×2), 125.2, 125.3, 127.2 (×3), 127.3, 127.4, 127.5 (×2), 127.6, 127.7 (×2), 127.8 (×2), 127.9 (×2), 128.0, 128.1 (×2), 128.2 (×2), 128.3 (×2), 128.4 (×3), 128.5, 128.6 (×3), 131.4, 137.2, 137.5, 137.7, 137.8 (×2), 137.9, 138.0, 138.2, 138.6, 138.9, 139.0, 141.2 (×2), 143.2, 143.4, 153.9 (×2), 154.3, 154, 172.3, 206.6.
Pentasaccharide 1 (30 mg, 11.1 μmol) was dissolved in a mixture of THF//H2O (3 mL/0.3 mL). Palladium-tetrakis(triphenylphosphine) (6.4 mg, 5.6 μmol) was added to the solution and then the mixture was stirred at room temperature overnight. The mixture was concentrated and then the residue was co-evaporated with toluene (3×5 mL). The solvents were removed in vacuum. Silica gel column chromatography (3:2:1 hexanes-EtOAc-DCM) afforded compound 20 (27.8 mg, 96%). 1H-NMR (600 MHz, CDCl3): δ 2.02 (s, 3H, Lev), 2.16 (br, 1H, OH), 2.37-2.39 (m, 2H, Lev), 2.51-2.54 (m, 2H, Lev), 3.02-3.03 (m, 2H), 3.12-3.15 (m, 1H), 3.29-3.31 (m, 1H), 3.33-3.38 (m, 2H), 3.46-3.68 (m, 13H), 3.76-3.80 (m, 3H), 3.85-3.89 (m, 4H), 3.94-3.96 (m, 1H), 3.99-4.09 (m, 2H), 4.13-4.20 (m, 4H), 4.23-4.24 (m, 1H), 4.30-4.34 (m, 4H), 4.36-4.40 (m, 4H), 4.45-4.47 (m, 6H), 4.50-4.54 (m, 4H), 4.57-4.67 (m, 5H), 4.7-4.75 (m, 2H), 4.78-4.81 (m, 3H), 4.92-4.98 (m, 4H), 5.19 (br, 1H), 5.25 (br, 1H), 7.02-7.27 (m, 56H), 7.32-7.41 (m, 6H), 7.52-7.57 (m, 3H), 7.63-7.71 (m, 4H), 7.74-7.75 (m, 1H); 13C-NMR (125 MHz, CDCl3): δ 27.8, 29.7, 29.8, 37.8, 46.5, 56.5, 57.2, 60.4, 63.2, 66.2, 67.6, 68.1, 68.4, 69.1, 69.7, 70.3, 70.5, 71.2, 71.8, 72.5, 72.6, 73.3, 73.5 (×2), 73.7 (×2), 73.9, 74.3, 74.4, 74.5, 74.7, 74.8, 75.0, 75.2, 76.6, 77.5, 77.7, 78.0, 78.1, 78.6, 79.4 (×2), 80.9, 95.6 (×2), 99.3, 99.6 (×2), 100.5, 101.0, 120.0 (×2), 125.2, 125.4, 125.8, 125.9, 126.4, 127.2, 127.3 (×2), 127.5, 127.6 (×4), 127.7 (×2), 127.8 (×3), 127.9 (×3), 128.1, 128.2 (×3), 128.3 (×3), 128.4 (×2), 128.6 (×2), 128.8, 132.9, 133.2, 135.8, 137.2, 137.7, 137.8 (×3), 138.0, 138.2, 138.7, 138.8, 141.2 (×3), 143.5, 153.9, 154.0, 154.6, 172.4, 206.7.
Pentasaccharide 1 (30 mg, 11.1 μmol) was dissolved in a mixture of DCM/MeOH (3 mL/0.3 mL). Hydrazine acetate (1.22 mg, 13.3 μmol) was added and then the mixture was stirred at room temperature under N2 for 5 h. The mixture was concentrated to dryness. Silica gel column chromatography (2.5:1:1 hexanes-EtOAc-DCM) afforded compound 21 (24.5 mg, 85%). 1H-NMR (500 MHz, CDCl3): δ 2.31 (br, 1H, OH), 3.02-3.04 (m, 1H), 3.0-3.10 (m, 1H), 3.27-3.31 (m, 3H), 3.37-3.38 (m, 2H), 3.47-3.7 (m, 14H), 3.72-3.74 (m, 1H), 3.79-3.80 (m, 1H), 3.87-3.88 (m, 2H), 3.93-3.97 (m, 2H), 4.05-4.08 (m, 1H), 4.14-4.28 (m, 5H), 4.30-4.63 (m, 24H), 4.67-4.69 (m, 1H), 4.72-4.84 (m, 4H), 4.93-4.98 (m, 4H), 5.04-5.14 (m, 3H), 5.2 (br, 1H), 5.24-5.26 (m, 2H), 5.77-5.82 (m, 1H, Alloc), 7.06-7.26 (m, 56H), 7.32-7.35 (m, 4H), 7.39-7.41 (m, 2H), 7.52-7.57 (m, 3H), 7.64-7.71 (m, 4H), 7.74-7.76 (m, 1H); 13C-NMR (125 MHz, CDCl3): δ 29.7, 46.5, 56.5, 57.8, 61.3, 67.1, 67.9, 68.4, 68.8, 69.2, 69.9, 70.3, 70.5, 71.5 (×2), 71.9, 72.2, 72.5, 72.6, 72.7, 73.3 (×2), 73.4, 73.9, 74.0, 74.3 (×2), 74.5, 74.9 (×2), 75.0, 75.1, 75.4, 76.5, 77.4, 77.8, 78.0 (×2), 78.4, 81.2, 95.6, 97.2, 99.5 (×2), 100.0, 101.0, 119.2, 120.0 (×2), 125.2, 125.4, 125.8, 125.9, 126.0, 126.3, 127.2, 127.3, 127.4 (×2), 127.5, 127.6 (×2), 127.7 (×4), 127.8 (×3), 127.9 (×2), 128.0 (×2), 128.1 (×2), 128.2, 128.3 (×2), 128.4 (×2), 128.5, 128.6 (×2), 131.4, 132.9, 133.2, 135.9, 137.3, 137.5, 137.6, 137.8, 138.0 (×2), 138.1, 138.5, 138.6, 139.0, 141.2, 141.3, 143.2, 143.5, 153.8, 153.9, 154.2, 154.7.
58 (22 g, 42.1 mmol) and p-methoxylphenol (6 g, 48.4 mmol) were dissolved in DCM (200 mL). The mixture was cooled down to 0° C., followed by addition of trifluoroborine etherate (15.9 ml, 126.3 mmol). The mixture was stirred at room temperature overnight and diluted with dichoromethane (200 mL). The resulting solution was washed with saturated aqueous solution of NaHCO3 and water and then dried over Na2SO4, filtered and concentrated to dryness. Silica gel column chromatography (3:2 hexanes-EtOAc) afforded 81 as white solid (22.5 g, 91%). 1H-NMR (500 MHz, CDCl3): δ 2.05 (br, 6H, Ac), 2.06 (br, 3H, Ac), 3.78 (s, 3H, MP), 4.07-4.15 (m, 2H, H-6a, H-6b), 4.19-4.27 (m, 2H, H-2, H-3), 4.63 (d, 1H, J=12.0 Hz, Troc), 4.82 (d, 1H, J=12.0 Hz, Troc), 5.20 (t, 1H, J=10.0 Hz, H-4), 5.43-5.46 (m, 2H, H-5, NH), 5.48 (d, 1H, J=3.0 Hz, H-1), 6.83-6.85 (m, 2H), 7.02-7.04 (m, 2H); 13C-NMR (75 MHz, CDCl3): δ 20.5, 20.6 (×2), 54.0, 55.5, 61.7, 68.0, 68.2, 70.7, 74.5, 95.2, 96.7, 114.6, 117.8, 149.8, 154.2, 155.5, 169.3, 170.4, 170.9. gHMQC (without 1H decoupling): 1JC1,H1=174.4 Hz.
81 (12 g, 20.5 mmol) was dissolved in MeOH (45 mL), AcOH (24 mL) and DCM (24 mL). Zn powder (24.1 g, 369 mmol) was added slowly at 0° C. and the mixture was stirred under N2 at room temperature for 1 hour. The mixture was filtered and concentrated to dryness. The resulting residue was diluted with DCM (300 mL), washed with a saturated aqueous solution of NaHCO3 until the pH was around 7 and then the organic layer was dried over Na2SO4, filtered and concentrated. Silica gel column chromatography (6:1 DCM-MeOH) afforded 82 as a white solid (7.2 g, 89%). Compound 82 (7.2 g, 17.5 mmol) was dissolved in MeOH (35 mL) and DCM (35 mL). 5.33 M NaOMe (9.9 mL, 52.5 mmol) was added to the solution and the mixture was stirred at room temperature for 2 h. The mixture was neutralized by conc. HCl until the pH was around 7 and then concentrated and dried under vacuum. The resulting residue, K2CO3 (4.8 g, 35 mmol) and a catalytic amount of ZnCl2 (120 mg, 0.9 mmol) were dissolved in MeOH (40 mL) and H2O (10 mL). Freshly prepared TfN3 (50 mL in DCM, 52.5 mmol) was added to the solution and the mixture was stirred at room temperature overnight. The solvent was evaporated and the resulting residue was diluted with EtOAc (200 mL). The mixture was neutralized by conc. HCl until the pH value was 6-7 and then concentrated to dryness. Silica gel column chromatography (10:1 DCM-MeOH) afforded 83 as a white solid (5.05, 93% over two steps). The obtained compound 83 (5 g, 16.1 mmol), camphorsulfonic acid (1.12 g, 4.83 mmol) and benzaldehyde dimethylacetal (2.89 mL, 19.3 mmol) in anhydrous toluene (100 mL) was stirred at room temperature for 2 h and then diluted with EtOAc (200 mL). The mixture was washed with a saturated aqueous solution of NaHCO3, water, and then the organic layer was dried over Na2SO4, filtered and concentrated. Silica gel column chromatography (2:1 hexane-EtOAc) afforded compound 84 as a white solid (5.13 g, 80%). 1H-NMR (500 MHz, CDCl3): δ 3.17 (br, 1H, OH), 3.41 (dd, 1H, J=10.0 Hz, 3.5 Hz, H-2), 3.61 (t, 1H, J=9.5 Hz, H-4), 3.75-3.79 (m, 1H, H-6b), 3.82 (br, 1H, MP), 4.05-4.10 (m, 1H, H-6a), 4.27-4.30 (m, 1H, H-5), 4.41 (t, 1H, J=10.0 Hz, H-3), 4.45 (d, 1H, J=3.5 Hz, H-1), 5.58 (s, 1H, PhCH), 6.88-6.91 (m, 2H), 7.05-7.08 (m, 2H), 7.41-7.44 (m, 3H), 7.53-7.55 (m, 2H); 13C-NMR (75 MHz, CDCl3): δ 55.6, 62.9, 63.0, 68.6, 68.7, 81.7, 98.3, 102.1, 114.7, 118.2, 126.3, 128.4, 129.4, 136.8, 150.3, 155.5.
84 (3 g, 7.51 mmol) was dissolved in DMF (50 mL) and the solution was cooled to 0° C. NaH (0.36 g, 60% NaH in mineral oil, 9 mmol) was added in portions, followed by addition of Benzyl bromide (1.07 mL, 9 mmol). The mixture was stirred at room temperature under N2 for 2 h and then concentrated to dryness. The residue was diluted with EtOAc (100 mL). The mixture was washed with saturated NaHCO3, water, and then the organic layer was dried over Na2SO4, filtered and concentrated. Silica gel column chromatography (3:1 hexane-EtOAc) afforded 85 as a white solid (3.5 g, 95%). 1H-NMR (500 MHz, CDCl3): δ 3.54 (dd, 1H, J=10.0 Hz, 3.5 Hz, H-2), 3.79-3.86 (m, 5H, H-4, H-6b, MP), 4.11-4.16 (m, 1H, H-5), 4.29-4.34 (m, 2H, H-3, H-6a), 4.90 (d, 1H, J=11.0 Hz, Bn), 5.05 (d, 1H, J=11.0 Hz, Bn), 5.47 (d, 1H, J=3.0 Hz, H-1), 5.65 (s, 1H, PhCH), 6.88-6.89 (m, 2H), 7.06-7.07 (m, 2H), 7.29-7.46 (m, 8H), 7.53-7.55 (m, 2H); 13C-NMR (75 MHz, CDCl3): δ 55.7, 62.9, 63.3, 68.8, 75.1, 76.0, 82.7, 98.3, 101.5, 114.7, 118.2, 126.0, 127.9, 128.2, 128.3, 128.5, 129.1, 137.1, 137.8, 150.3, 155.5.
Compound 85 (2 g, 4.09 mmol) was dissolved in DCM (200 mL) and the solution was cooled down to −78° C., followed by sequential addition of Et3SiH (2.1 mL, 13.1 mmol) and TfOH (1.05 mL, 11.9 mmol). The mixture was stirred at −78° C. for 1 h and then quenched by MeOH/Et3N (2 mL/each). The resulting mixture was washed by saturated aqueous NaHCO3 and H2O and concentrated. Silica gel chromatography (3:1:1 hexanes-EtOAc-DCM) afforded compound 86 (1.84 g, 92%). 1H-NMR (500 MHz, CDCl3): δ 2.89 (d, 1H, J=3.5 Hz, OH), 3.47 (dd, 1H, J=10.0 Hz, 3.5 Hz, H-2), 3.73-3.90 (m, 6H, H-5, H-6a, H-6b, MP), 4.04-4.10 (m, 1H, H-4), 4.12-4.14 (m, 1H, H-3), 4.56-4.66 (m, 2H, Bn), 4.95-5.06 (m, 2H, Bn), 5.49 (d, 1H, J=3.0 Hz, H-1), 6.89-6.91 (m, 2H), 7.15-7.16 (m, 2H), 7.36-7.47 (m, 8H), 7.51-7.53 (m, 2H); 13C-NMR (75 MHz, CDCl3): δ 55.5, 62.5, 63.3, 69.4, 70.6, 71.8, 73.5, 75.0, 79.5, 97.8, 114.5, 118.2, 127.5, 127.7, 127.9, 128.0, 128.3, 128.5, 137.6, 138.0, 150.4, 155.3.
86 (0.65 g, 1.32 mmol) 1 M PMe3 in THF (6.6 mL, 6.6 mmol), 1 M NaOH (3.4 mL, 3.4 mmol) and THF/H2O (40 mL/10 mL) was stirred at room temperature overnight. The mixture was concentrated and the resulting residue was diluted with DCM (100 mL). The mixture was neutralized by conc. HCl until the pH was around 7. The mixture was concentrated and dried under vacuum. The resulting residue was purified by quickly passing through a short silica gel column (10:1, DCM-MeOH). The obtained solid and solid NaHCO3 (0.22 g, 2.64 mmol) were put into THF (16 mL) and then 2,2,2-Trichloroethyl chloroformate (0.21 mL, 1.58 mmol) was added to the solution. The mixture was stirred at room temperature under N2 for 4 hours and filtered. The filtrate was concentrated and then diluted with DCM (50 mL). The mixture was washed with water, brine, and then the organic layer was dried over Na2SO4, filtered and concentrated. Silica gel column chromatography (7:1 hexane-EtOAc) afforded compound 87 as a white solid (0.75 g, 89% for two steps). 1H-NMR (500 MHz, CDCl3): δ 2.99 (d, 1H, J=2.5 Hz, OH), 3.73-3.81 (m, 5H, H-6a, H-6b, MP), 3.83-3.87 (m, 1H, H-5), 3.90-3.94 (m, 1H, H-3), 4.00-4.03 (m, 1H, H-4), 4.15-4.21 (m, 1H, H-2), 4.56 (d, 1H, J=12.0 Hz, Bn), 4.63 (d, 1H, J=12.0 Hz, Bn), 4.70 (d, 1H, J=12.0 Hz, Bn), 4.86-4.92 (m, 3H, Bn, Troc), 5.35 (d, 1H, J=9.5 Hz, NH), 5.47 (d, 1H, J=3.5 Hz, H-1), 6.85-6.87 (m, 2H), 7.05-7.07 (m, 2H), 7.29-7.42 (m, 10H); 13C-NMR (75 MHz, CDCl3): δ 54.4, 55.5, 69.7, 70.7, 71.9, 73.5, 74.4, 74.6, 79.7, 95.3, 97.5, 114.6, 118.2, 127.5, 127.7 (×2), 127.8 (×2), 128.3, 128.5, 137.7, 138.1, 150.1, 154.2, 155.3.
1,2,3,4,6-penta-O-acetyl-β-D-galactopyranoside 90 (5 g, 12.8 mmol) was dissolved in DMF (60 mL) and hydrazine acetate (1.3 g, 14.1 mmol) was added. The mixture was stirred at room temperature overnight and then concentrated to dryness. The resulting residue was diluted with EtOAc (200 mL) and then washed with saturated aqueous solution of NaHCO3 and water. The organic phase was dried over Na2SO4, filtered and concentrated to dryness. Silica gel column chromatography (1:1 hexanes-EtOAc) afforded compound as white solid (4.27 g, 96%). The obtained solid (2.1 g, 6.03 mmol), Cl3CCN (12.1 mL, 121 mmol) and DCM (40 mL) was cooled down to 0° C. Cs2CO3 (1.96 g, 6.03 mmol) was added and the mixture was stirred at room temperature for 1 h. The mixture was concentrated. Silica gel column chromatography (2:1 hexanes-EtOAc) afforded the corresponding imidate 91 as a white solid (2.85 g, 96%). Imidate 91 (0.88 g, 1.62 mmol), acceptor 87 (0.73 g, 1.1 mmol), molecular sieve MS-4 Å and DCM (40 mL) was stirred at room temperature for 30 min. The mixture was cooled to −70° C., followed by addition of TfOH (29 μL, 0.32 mmol). The reaction mixture was stirred for 1 hour from −70 to −20° C. and then was quenched with Et3N (0.05 mL). The mixture was diluted with DCM (200 mL), washed with a saturated aqueous solution of NaHCO3, H2O and then dried over Na2SO4, filtered and concentrated. Silica gel column chromatography (3:2 hexanes-EtOAc) afforded disaccharide 92 as a white solid (1.05 g, 95%). 1H-NMR (500 MHz, CDCl3): δ 1.96 (s, 3H, Ac), 1.98 (s, 3H, Ac), 2.01 (s, 3H, Ac), 2.10 (s, 3H, Ac), 3.58-3.63 (m, 2H, H-6a, H-6b), 3.77 (s, 3H, MP), 3.81-3.83 (m, 3H, H-3, H-5, H-6b′), 3.86-3.96 (m, 2H, H-4, H-6a′), 4.08-4.16 (m, 2H, H-2, H-5′), 4.44 (d, 1H, J=12.0 Hz, Bn), 4.50 (d, 1H, J=8.0 Hz, H-1′), 4.70 (d, 1H, J=11.0 Hz, Bn), 4.75-4.82 (m, 3H, H-3′, Troc), 5.02 (d, 1H, J=12.0 Hz, Bn), 5.13 (t, 1H, J=9.5 Hz, H-2′), 5.21-5.23 (m, 1H, H-4′), 5.27 (br, 1H, NH), 5.49 (d, 1H, J=3.0 Hz, H-1), 6.82-6.84 (m, 2H), 7.00-7.02 (m, 2H), 7.26-7.43 (m, 10H); 13C-NMR (75 MHz, CDCl3): δ 20.4 (×2), 20.5, 20.6, 20.9, 54.6, 55.5, 60.2, 60.5, 66.7, 67.1 69.4, 70.3, 70.8, 71.0, 73.5, 74.3, 74.4, 76.4, 77.4, 95.2, 96.9, 100.0, 114.5, 117.6, 127.4 (×2), 128.1, 128.5, 137.4, 138.4, 150.1, 154.1, 155.1, 169.1, 169.8, 170.0 (×2). gHMQC (without 1H decoupling): 1JC1,H1=174.8, 163.1 Hz.
Disaccharide 92 (1.0 g, 1.03 mmol) was dissolved in a mixture of CH3CN//H2O (30 mL/7.5 mL). Ceric ammonium nitrate (1.69 g, 3.09 mmol) was added to the solution at 0° C. and then the mixture was stirred at room temperature under N2 for 2 h. The mixture was concentrated to dryness and the residue was diluted with DCM (100 mL) and the organic phase was washed with H2O and then dried over Na2SO4, filtered and the solvents were removed in vacuum. Silica gel column chromatography (3:2 hexanes-EtOAc) afforded the corresponding hemiacetal 93 (730 mg, 82%). Compound 93, N-phenyltrifluoroacetimidoyl chloride (0.68 mL, 4.2 mmol) and DCM (50 mL) was cooled down to 0° C. DBU (127 μL, 0.95 mmol) was added and the mixture was stirred at room temperature for 1 h. The mixture was concentrated. Silica gel column chromatography (2:1 hexanes-EtOAc) afforded the disaccharide donor 3 as a white solid (650 mg, 75%).
Imidate donor 91 (644 mg, 1.31 mmol), acceptor 86 (450 mg, 0.92 mmol), molecular sieve MS-4 Å and DCM (40 mL) was stirred at room temperature for 30 min. The mixture was cooled to −70° C., followed by addition of TfOH (23 μL, 0.26 mmol). The reaction mixture was stirred for 1 hour from −70 to −20° C. and then was quenched with Et3N (0.05 mL). The mixture was diluted with DCM (100 mL), washed with a saturated aqueous solution of NaHCO3, H2O and then dried over Na2SO4, filtered and concentrated. Silica gel column chromatography (2:1 hexanes-EtOAc) afforded 94 as a white solid (716 mg, 95%). 1H-NMR (500 MHz, CDCl3): δ 1.96 (s, 3H, Ac), 1.98 (s, 3H, Ac), 2.02 (s, 3H, Ac), 2.12 (s, 3H, Ac), 3.51 (dd, 1H, J=10.0, 4.0 Hz, H-2), 3.56-3.59 (m, 1H, H-6b), 3.62-3.64 (m, 1H, H-5), 3.77-3.81 (m, 4H, H-6a, MP), 3.86-3.89 (m, 2H, H-6a′, H-6b′), 3.99-4.03 (m, 1H, H-4), 4.08-4.17 (m, 2H, H-3, H-5′), 4.42 (d, 1H, J=11.5 Hz, Bn), 4.47 (d, 1H, J=9.0 Hz, H-1′), 4.78-4.83 (m, 3H, H-3′, Bn), 5.13-5.16 (m, 2H, H-2′, Bn), 5.28 (d, 1H, J=3.0 Hz, H-4′), 5.46 (d, 1H, J=4.0 Hz, H-1), 6.84-6.87 (m, 2H), 7.06-7.09 (m, 2H), 7.29-7.32 (m, 1H), 7.35-7.44 (m, 7H), 7.48-7.50 (m, 2H); 13C-NMR (75 MHz, CDCl3): δ 20.7, 20.8 (×2), 21.0, 55.8, 60.7, 62.9, 67.0, 67.5, 69.7, 70.7, 71.2 (×2), 73.9, 75.3, 77.8, 77.9, 97.7, 100.2, 114.9, 118.1, 127.9, 128.2, 128.4, 128.5, 128.6, 129.0, 137.6, 138.5, 150.7, 155.6, 169.3, 170.2, 170.3, 170.4.
Compound 94 (710 mg, 0.86 mmol) was dissolved in DCM/MeOH (10 mL each). NaOMe (30%, 0.29 mL, 5.2 mmol) was added to the solution and the mixture was stirred at room temperature for 2 h. The mixture was neutralized by conc. HCl until the pH was around 7 and then concentrated and dried under vacuum. The obtained residue was dissolved in DMF (20 mL) and the solution was cooled to 0° C. NaH (210 mg, 60% NaH in mineral oil, 5.2 mmol) was added in portions, followed by addition of Benzyl bromide (0.51 mL, 4.3 mmol). The mixture was stirred at room temperature for 2 h and then quenched by EtOH. The mixture was diluted with EtOAc (100 mL) and was washed with saturated NaHCO3, water, and then the organic layer was dried over Na2SO4, filtered and concentrated. Silica gel column chromatography (5:1 hexane-EtOAc) afforded compound 95 as a white solid (820 mg, 94% for 2 steps). 1H-NMR (500 MHz, CDCl3): δ 3.46-3.51 (m, 3H, H-5, H-6b, H-6b′), 3.56 (dd, 1H, J=10.0, 3.5 Hz, H-2), 3.64-3.67 (m, 2H, H-6a, H-6a′), 3.88 (br, 3H, MP), 3.93 (d, 1H, J=7.5 Hz, H-2′), 4.00-4.03 (m, 2H, H-4, H-5′), 4.05 (d, 1H, J=2.5 Hz, H-4′), 4.18-4.27 (m, 2H, H-3, H-3′), 4.36 (d, 1H, J=12.0 Hz, Bn), 4.46-4.50 (m, 3H, H-1′, Bn), 4.67-4.71 (m, 2H, Bn), 4.81-4.87 (m, 3H, Bn), 4.90-4.98 (m, 2H, Bn), 5.13 (d, 1H, J=11.5 Hz, Bn), 5.33 (d, 1H, J=10.5 Hz, Bn), 5.52 (d, 1H, J=3.5 Hz), H-1), 6.95-6.97 (m, 2H), 7.20-7.22 (m, 2H), 7.28-7.49 (m, 28H), 7.55-7.56 (m, 2H); 13C-NMR (75 MHz, CDCl3): δ 55.5, 62.6, 67.6, 68.0, 69.7, 71.2, 72.5, 73.0, 73.2, 73.3, 73.6, 74.7, 75.2, 75.3, 76.4, 76.6, 79.9, 82.3, 97.7, 102.7, 114.6, 118.1, 127.2, 127.3, 127.4, 127.5 (×3), 127.6, 127.7, 127.8, 127.9, 128.1 (×2), 128.2, 128.3 (×2), 137.9, 138.0, 138.4 (×2), 138.6, 138.9, 150.6, 155.3.
Compound 95 (800 mg, 0.79 mmol), 1 M PMe3 in THF (3.94 mL, 3.95 mmol), 1 M NaOH (2.1 mL, 2.1 mmol) and THF/H2O (40 mL/10 mL) was stirred at room temperature overnight. The mixture was concentrated and the resulting residue was diluted with DCM (100 mL). The mixture was neutralized by conc. HCl until the pH was around 7. The mixture was concentrated and dried under vacuum. The resulting residue and solid NaHCO3 (130 mg, 1.58 mmol) were put into THF (20 mL) and then 2,2,2-Trichloroethyl chloroformate (0.127 mL, 0.95 mmol) was added to the solution. The mixture was stirred at room temperature under N2 for 4 hours and filtered. The filtrate was concentrated and then diluted with DCM (100 mL). The mixture was washed with water, brine, and then the organic layer was dried over Na2SO4, filtered and concentrated. Silica gel column chromatography (4:1 hexane-EtOAc) afforded compound 96 as a white solid (769 mg, 84% for two steps). 1H-NMR (500 MHz, CDCl3): δ 3.27-3.31 (m, 3H, H-5, H-6b, H-6b′), 3.36-3.40 (m, 1H, H-6a), 3.45-3.47 (m, 1H, H-6a′), 3.68-3.71 (m, 4H, H-2′, MP), 3.75-3.78 (m, 2H, H-4, H-5′), 3.82 (br, 1H, H-4′), 3.99-4.04 (m, 2H, H-3, H-3′), 4.15 (d, 1H, J=12.0 Hz, Bn), 4.24-4.29 (m, 3H, H-2, Bn), 4.43-4.46 (m, 2H, H-1′, Bn), 4.53-4.75 (m, 7H, Bn, Troc), 4.86 (d, 1H, J=11.5 Hz, Bn), 5.01 (d, 1H, J=11.5 Hz, Bn), 5.07 (d, 1H, J=9.5 Hz, Bn), 5.36 (d, 1H, J=3.0 Hz), H-1), 6.72-6.73 (m, 2H), 6.92-6.94 (m, 2H), 7.13-7.25 (m, 30H); 13C-NMR (75 MHz, CDCl3): δ 54.7, 55.6, 67.8, 68.1, 71.4, 72.5, 73.0, 73.1, 73.4, 73.6, 74.4, 74.6 (×2), 75.3, 77.9, 80.0, 82.4, 95.4, 97.3, 102.8, 114.6, 127.2, 118.1, 127.2, 127.3, 127.4, 127.5 (×2), 127.6, 127.7, 127.8 (×2), 128.0, 128.1, 128.3 (×2), 128.4, 138.0, 138.1, 138.4, 138.7, 138.9, 139.0, 150.4, 154.2, 155.3.
96 (1.1 g, 0.95 mmol) was dissolved in a mixture of CH3CN//H2O (30 mL/7.5 mL). Ceric ammonium nitrate (1.55 g, 2.85 mmol) was added to the solution at 0° C. and then the mixture was stirred at room temperature under N2 for 2 h. The mixture was concentrated to dryness and the residue was diluted with DCM (100 mL) and the organic phase was washed with H2O and then dried over Na2SO4, filtered and the solvents were removed in vacuum. Silica gel column chromatography (2.5:1 hexanes-EtOAc) afforded the corresponding hemiacetal 97 (890 mg, 89%). Compound 97, N-phenyltrifluoroacetimidoyl chloride (0.68 mL, 4.22 mmol) and DCM (40 mL) was cooled down to 0° C. DBU (126 μL, 0.95 mmol) was added and the mixture was stirred at room temperature for 1 h. The mixture was concentrated. Silica gel column chromatography (3:1 hexanes-EtOAc) afforded the corresponding imidate 2 as a white solid (550 mg, 53%).
Donor 2 (468 mg, 0.38 mmol), pentasaccharide acceptor 18 (475 mg, 0.19 mmol), molecular sieve MS-4 Å and DCM (45 mL) was stirred at room temperature for 30 min. The mixture was cooled to −60° C., followed by addition of TfOH (6.7 μL, 0.076 mmol). The reaction mixture was stirred for 1 hour from −60 to −20° C. and then was quenched with Et3N (0.01 mL). The mixture was diluted with DCM (100 mL), washed with a saturated aqueous solution of NaHCO3, H2O and then dried over Na2SO4, filtered and concentrated. Silica gel column chromatography (2.5:1:1 hexanes-EtOAc-DCM) afforded 22 as a white solid (650 mg, 97%). 1H-NMR (600 MHz, CDCl3): δ 2.12 (s, 3H, Lev), 2.46-2.50 (m, 2H, Lev), 2.58-2.64 (m, 2H, Lev), 3.03-3.11 (m, 3H), 3.32-3.43 (m, 9H), 3.50-3.66 (m, 13H), 3.73-3.75 (m, 2H), 3.43-3.45 (m, 1H), 3.81-3.85, (m, 4H), 3.87-3.99 (m, 7H), 4.08-4.10 (m, 3H), 4.21-4.28 (m, 4H), 4.33-4.66 (m, 30H), 4.69-4.77 (m, 6H), 4.80-4.90 (m, 8H), 4.96-5.08 (m, 6H), 5.13 (br, 1H), 5.23 (d, 1H, J=10.2 Hz), 5.30-5.33 (m, 1H), 5.82-5.89 (m, 1H, Alloc), 7.11-7.36 (m, 84H), 7.42-7.43 (m, 2H), 7.47-7.49 (m, 2H), 7.62 (br, 1H), 7.74-7.76 (m, 2H), 7.82-7.85 (m, 1H); 13C-NMR (125 MHz, CDCl3): δ 27.8, 29.7, 37.8, 56.3, 56.6, 57.4, 60.3, 63.1, 66.7, 68.1, 68.2, 68.3, 68.4, 68.6, 69.8, 70.0, 70.5, 70.8, 71.2, 71.8, 72.5, 72.7, 72.9, 73.0, 73.1 (×2), 73.4 (×2), 73.5, 73.6 (×2), 73.8, 74.2 (×2), 74.3 (×2), 74.5, 74.6, 74.8 (×2), 75.1, 76.2, 76.5, 77.7, 77.8, 78.1, 78.4, 78.6, 79.8, 80.3, 82.3, 95.5, 95.6, 95.7, 97.3, 99.5, 99.6, 99.9, 100.2, 101.1, 102.7, 118.9, 125.6, 125.9, 126.0 126.2, 126.3, 127.1, 127.3 (×3), 127.4 (×2), 127.5 (×2), 127.6 (×4), 127.7 (×2), 127.8 (×3), 127.9 (×2), 128.0 (×3), 128.1 (×2), 128.2 (×3), 128.3 (×3), 128.4, 128.5, 128.6, 131.4, 132.8, 133.2, 136.1, 137.2, 137.8 (×2), 137.9, 138.0, 138.1 (×2), 138.2, 138.4 (×2), 138.6, 138.7 (×2), 138.9, 153.8 (×2), 154.2, 172.2, 206.7. gHMQC (without 1H decoupling): 1JC1,H1=173.7, 171.6, 164.5, 162.1, 161.1, 160.9, 159.1 Hz.
Heptasaccharide 22 (100 mg, 28.3 μmol) was dissolved in a mixture of DCM//H2O (6 mL/0.6 mL) and the solution was cooled to 0° C. DDQ (7.7 mg, 34.0 μmol) was added to the solution and the mixture was stirred at room temperature under N2 for 3 h. The mixture was diluted with DCM (30 mL) and the organic phase was washed with H2O until the solution became colorless. The organic phase was dried over Na2SO4, filtered and the solvents were removed in vacuum. Silica gel column chromatography (2.5:1:1 hexanes-EtOAc-DCM) afforded acceptor 23 (72.7 mg, 76%). 1H-NMR (600 MHz, CDCl3): δ 2.02 (s, 3H, Lev), 2.23 (br, 1H, OH), 2.35-2.38 (m, 2H, Lev), 2.51-2.54 (m, 2H, Lev), 2.91-2.93 (m, 1H), 2.98-2.99 (m, 2H), 3.25-3.32 (m, 8H), 3.40-3.57 (m, 13H), 3.62-3.74 (m, 7H), 3.77-3.89 (m, 5H), 3.95 (br, 1H), 3.97-4.00 (m, 3H), 4.03-4.05 (m, 1H), 4.14-4.32 (m, 11H), 4.34-4.40 (m, 5H), 4.43-4.52 (m, 15H), 4.59-4.64 (m, 6H), 4.66-4.73 (m, 4H), 4.75-4.79 (m, 5H), 4.84-4.88 (m, 4H), 4.96-5.02 (m, 3H), 5.12 (d, 1H, J=10.8 Hz), 5.20-5.22 (m, 1H), 5.72-5.79 (m, 1H, Alloc), 6.98-7.01 (m, 3H), 7.06-7.25 (m, 80H), 7.32-7.33 (m, 2H); 13C-NMR (125 MHz, CDCl3): δ 27.9, 29.8, 37.9, 56.4, 56.6, 57.5, 63.1, 66.8, 68.2, 68.3, 68.4, 68.5, 68.7, 69.9, 70.2, 70.5, 70.9, 71.3, 71.9, 72.6, 72.7, 73.0, 73.1, 73.4, 73.5, 73.6, 73.7, 73.9, 74.2, 74.3, 74.4, 74.6 (×3), 74.8, 75.1 (×2), 75.2, 76.2, 76.7, 76.8, 77.7, 77.9, 78.5, 79.9, 80.0, 82.4, 95.6, 95.7, 97.4, 99.6, 99.9, 100.3, 101.0, 102.9, 119.0, 126.1, 127.2, 127.3, 127.4 (×5), 127.5 (×3), 127.7 (×3), 127.8, 127.9, 128.0 (×3), 128.1, 128.2 (×3), 128.3 (×4), 128.4 (×2), 128.5 (×2), 128.6 (×2), 131.4, 137.3, 137.9 (×3), 138.0 (×3), 138.2, 138.3, 138.4, 138.5, 138.6, 138.7, 138.9 (×2), 139.0 (×2), 153.9 (×2), 154.3, 172.2, 206.7.
Heptasaccharide 22 (200 mg, 56.7 μmol) was dissolved in a mixture of THF//H2O (20 mL/2 mL). Palladium-tetrakis(triphenylphosphine) (32.7 mg, 28.4 μmol) was added to the solution and then the mixture was stirred at room temperature overnight. The mixture was concentrated and then the residue was co-evaporated with toluene (3×5 mL). The solvents were removed in vacuum. Silica gel column chromatography (2:1 hexanes-EtOAc) afforded acceptor 28 as a white solid (182 mg, 93%). 1H-NMR (600 MHz, CDCl3): δ 2.04 (s, 3H, COCH3), 2.30 (s, 3H, SPhCH3), 3.04-3.05 (m, 1H), 3.17 (dd, 1H, J=3.6, 10.2 Hz, H-2′), 3.37-3.40 (m, 1H), 3.64-3.80 (m, 9H), 4.01-4.02 (m, 2H), 4.43-4.45 (m, 1H), 4.52 (s, 2H), 4.68-4.90 (m, 4H), 4.74 (d, 1H, J=9.6 Hz, H-1), 5.32 (t, 1H, J=9.6 Hz, H-2), 5.63 (d, 1H, J=3.6 Hz, H-1′), 6.89-6.90 (m, 2H), 7.03-7.05 (m, 2H), 7.14-7.48 (m, 16H), 7.57-7.60 (m, 1H), 8.10-8.11 (m, 2H); 13C-NMR (150 MHz, CDCl3): δ 20.7, 21.1, 55.2, 62.5, 62.6, 68.6, 70.4, 70.8, 72.1, 72.7, 73.3, 74.6, 75.3, 78.9 (×2), 85.1, 85.9, 97.3, 113.7, 127.6, 127.8, 128.0, 128.1 (×2), 128.2, 128.5 (×2), 129.3, 129.5, 129.6, 129.8, 130.0, 133.3, 133.6, 137.2, 137.8, 138.3, 159.1, 165.1, 172.1.
Disaccharide donor 3 (33 mg, 31.8 μL), Heptasaccharide acceptor 23 (54 mg, 15.9 μL), molecular sieve MS-4 Å and DCM (10 mL) were stirred at room temperature for 30 min. The mixture was cooled to −60° C., followed by addition of TfOH (6.7 μL, 0.076 mmol). The reaction mixture was stirred for 1 hour from −60 to −20° C. and then was quenched with Et3N (0.01 mL). The mixture was diluted with DCM (100 mL), washed with a saturated aqueous solution of NaHCO3, H2O and then dried over Na2SO4, filtered and concentrated. Silica gel column chromatography (2:1:1 hexanes-EtOAc-DCM) afforded 24 as a white solid (63.2 mg, 94%). 1H-NMR (600 MHz, CDCl3): δ 1.87 (s, 3H, Ac), 1.88 (s, 3H, Ac), 1.89 (s, 3H, Ac), 2.00 (s, 3H, Ac), 2.02 (s, 3H, Lev), 2.738 (br, 2H, Lev), 2.51-2.52 (m, 2H, Lev), 2.88-3.04 (m, 4H), 3.16-3.55 (m, 28H), 3.62-3.66 (m, 4H), 3.73-4.03 (m, 18H), 4.15-4.17 (m, 4H), 4.22-4.79 (m, 47H), 4.83-5.02 (m, 9H), 5.11-5.15 (m, 2H), 5.50-5.23 (m, 1H), 5.73-5.78 (m, 1H, Alloc), 6.93-7.39 (m, 95H); 13C-NMR (125 MHz, CDCl3): δ 20.5, 20.6, 20.9, 27.8, 29.6 29.8, 37.8, 56.3, 57.0, 57.4, 57.7, 60.5, 63.1, 66.7, 67.4, 68.1, 68.3, 68.6, 69.2, 69.8, 70.3, 70.5, 70.7, 71.3, 71.8, 71.9, 72.5, 72.7, 72.9, 73.1 (×2), 73.2, 73.3, 73.4, 73.5, 73.6, 73.7, 74.1, 74.2, 74.3, 74.4, 74.5, 74.6, 74.8, 75.1 (×2), 75.4, 76.6, 77.9, 78.3, 78.4, 78.6, 78.8, 79.9, 82.2, 95.6, 95.7, 97.3, 99.5 (×2), 100.2, 100.8, 101.1, 102.7, 118.9, 126.1, 127.0, 127.1, 127.2, 127.3 (×2), 127.4, 127.5 (×2), 127.6 (×2), 127.7 (×2), 127.8 (×2), 127.9, 128.0 (×2), 128.1 (×3), 128.2 (×3), 128.3 (×2), 128.4 (×2), 128.5 (×2), 128.6 (×2), 128.9, 129.4, 131.4, 137.2, 137.8 (×2), 138.0, 138.2 (×2), 138.3, 138.4, 138.6 (×2), 138.7, 139.0 (×2), 153.8 (×2), 154.2, 169.4, 170.0, 170.1 (×2), 172.2, 206.6. gHMQC (without 1H decoupling): 1JC1,H1=173.7, 171.6, 164.5, 162.1, 161.1, 160.9, 159.1 Hz.
Nonasaccharide 24 (50 mg, 11.8 μmol) was dissolved in a mixture of DCM/MeOH (5 mL/0.5 mL). Hydrazine acetate (1.3 mg, 14.2 μmol) was added and then the mixture was stirred at room temperature under N2 for 5 h. The mixture was concentrated to dryness. Silica gel column chromatography (2.5:1:1 hexanes-EtOAc-DCM) afforded acceptor 25 (41.3 mg, 85%). 1H-NMR (800 MHz, CDCl3): δ 1.95 (s, 3H, Ac), 1.96 (s, 3H, Ac), 1.97 (s, 3H, Ac), 2.08 (s, 3H, Ac), 2.95-3.02 (m, 2H), 3.12-3.13 (m, 1H), 3.26-3.30 (m, 5H), 3.35-3.68 (m, 24H), 3.72-3.77 (m, 3H), 3.81-3.95 (m, 11H), 4.00-4.12 (m, 2H), 4.14-4.27 (m, 2H), 4.30-4.33 (m, 4H), 4.38-4.57 (m, 27H), 4.65-4.74 (m, 11H), 4.76-4.87 (m, 10H), 4.91-4.95 (m, 3H), 4.99-5.05 (m, 5H), 5.13 (br, 1H), 5.20-5.23 (m, 2H), 5.26-5.34 (m, 1H), 5.86-5.90 (m, 1H, Alloc), 7.03 (br, 2H), 7.08-7.35 (m, 91H), 7.45-7.46 (m, 2H).
86 (400 mg, 0.81 mmol) was dissolved in DMF (20 mL) and the solution was cooled to 0° C. NaH (49 mg, 60% NaH in mineral oil, 13.8 mmol) was added in portions, followed by addition of Benzyl bromide (1.65 mL, 1.2 mmol). The mixture was stirred at room temperature for 2 h and then diluted with EtOAc (100 mL). The mixture was washed with saturated NaHCO3, water, and then the organic layer was dried over Na2SO4, filtered and concentrated. Silica gel column chromatography (7:1 hexane-EtOAc) afforded compound 88 as a white solid (470 mg, 99%). 1H-NMR (500 MHz, CDCl3): δ 3.62-3.65 (m, 1H, H-2), 3.78-3.80 (m, 1H, H-6b), 3.86 (br, 3H, MP), 3.91-3.93 (m, 1H, H-6a), 3.96-4.00 (m, 1H, H-4), 4.16-4.18 (m, 1H, H-5), 4.35-3.39 (m, 1H, H-3), 4.59 (d, 1H, J=12.0 Hz, Bn), 4.70-4.76 (m, 2H, Bn), 4.99 (d, 1H, J=11.0 Hz, Bn), 5.06-5.12 (m, 2H, Bn), 5.61 (d, 1H, J=2.5 Hz, H-1), 6.95-6.97 (m, 2H), 7.21-7.23 (m, 2H), 7.32-7.34 (m, 2H), 7.40-7.50 (m, 11H), 7.55-7.56 (m, 2H); 13C-NMR (75 MHz, CDCl3): δ 55.4, 63.1, 68.1, 71.1, 73.3, 74.9, 75.3, 78.0, 80.0, 97.6, 114.5, 118.0, 127.6 (×2), 127.7 (×3), 127.9, 128.0, 128.2, 128.3 (×2), 137.6, 137.8 (×2), 150.3, 155.2.
88 (600 mg, 1.03 mmol), 1 M PMe3 in THF (5.2 mL, 5.2 mmol), 1 M NaOH (2.68 mL, 2.7 mmol) and THF/H2O (40 mL/10 mL) was stirred at room temperature overnight. The mixture was concentrated and the resulting residue was diluted with DCM (100 mL). The mixture was neutralized by conc. HCl until the pH was around 7. The mixture was concentrated and dried under vacuum. The resulting residue and solid NaHCO3 (170 mg, 2.06 mmol) were put into THF (15 mL) and then 2,2,2-Trichloroethyl chloroformate (0.167 mL, 1.24 mmol) was added to the solution. The mixture was stirred at room temperature under N2 for 4 hours and filtered. The filtrate was concentrated and then diluted with DCM (50 mL). The mixture was washed with water, brine, and then the organic layer was dried over Na2SO4, filtered and concentrated. Silica gel column chromatography (5:1:1 hexane-EtOAc-DCM) afforded compound 89 as a white solid (610 mg, 80% for two steps). 1H-NMR (500 MHz, CDCl3): δ 3.73-3.75 (m, 1H, H-6b), 3.82 (br, 3H, MP), 3.85-3.87 (m, 1H, H-6a), 3.92-3.94 (m, 1H, H-5), 3.99-4.07 (m, 2H, H-3, H-4), 4.24-4.28 (m, 1H, H-2), 4.55 (d, 1H, J=12.0 Hz, Bn), 4.64 (d, 1H, J=11.0 Hz, Bn), 4.69-4.73 (m, 2H, Bn), 4.87-4.92 (m, 3H, Bn, Troc), 4.98 (d, 1H, J=11.0 Hz, Bn), 5.28 (d, 1H, J=9.5 Hz, NH), 5.55 (d, 1H, J=3.5 Hz, H-1), 6.88-6.89 (m, 2H), 7.07-7.09 (m, 2H), 7.26-7.29 (m, 2H), 7.34-7.43 (m, 13H); 13C-NMR (75 MHz, CDCl3): δ 55.0, 55.5, 68.2, 71.4, 73.3, 74.6, 75.0, 75.2, 78.1, 80.1, 95.3, 97.4, 114.6, 118.0, 127.7, 127.8 (×3), 128.0, 128.3 (×2), 128.4, 137.8 (×2), 138.0, 150.0, 154.2, 155.3.
Compound 89 (100 mg, 0.136 mmol) was dissolved in a mixture of CH3CN/H2O (4 mL/1 mL). Ceric ammonium nitrate (225 mg, 0.408 mmol) was added to the solution at 0° C. and then the mixture was stirred at room temperature under N2 for 2 h. The mixture was concentrated to dryness and the residue was diluted with DCM (50 mL) and the organic phase was washed with H2O and then dried over Na2SO4, filtered and the solvents were removed in vacuum. Silica gel column chromatography (3:1 hexanes-EtOAc) afforded the corresponding hemiacetal 98 (60.2 mg, 70%). The obtained compound 98 (40 mg, 64 μmol), N-phenyltrifluoroacetimidoyl chloride (52 μL, 0.32 mmol) and DCM (5 mL) was cooled down to 0° C. DBU (9.6 μL, 64 μmol) was added and the mixture was stirred at room temperature for 1 h. The mixture was concentrated. Silica gel column chromatography (3:1 hexanes-EtOAc) afforded the corresponding imidate donor 4 as a white solid (40.3 mg, 70%).
Glucosamine donor 4 (46.2 mg, 58.0 μL), nonasaccharide acceptor 25 (120 mg, 29 μL), molecular sieve MS-4 Å and DCM (8 mL) was stirred at room temperature for 30 min. The mixture was cooled to −60° C., followed by addition of TfOH (6.7 μL, 0.076 mmol). The reaction mixture was stirred for 1 hour from −60 to −20° C. and then was quenched with Et3N (0.01 mL). The mixture was diluted with DCM (100 mL), washed with a saturated aqueous solution of NaHCO3, H2O and then dried over Na2SO4, filtered and concentrated. Silica gel column chromatography (2:1 hexanes-EtOAc) afforded decasaccharide 26 as a white solid (108 mg, 78%). 1H-NMR (600 MHz, CDCl3): δ 1.94 (s, 3H, Ac), 1.96 (s, 3H, Ac), 1.97 (s, 3H, Ac), 2.08 (s, 3H, Ac), 2.97-3.00 (m, 1H), 3.10-3.23 (m, 3H), 3.29-3.60 (m, 27H), 3.66-3.75 (m, 7H), 3.82-3.99 (m, 18H), 4.09-4.24 (m, 6H), 4.30-4.37 (m, 8H), 4.44-4.86 (m, 51H), 4.91-5.05 (m, 8H), 5.09 (br, 1H), 5.18-5.19 (m, 1H), 5.22-5.27 (d, 1H, J=3.0 Hz), m, 1H), 5.28-5.31 (m, 1H), 5.79-5.85 (m, 1H), 7.01-7.37 (m, 108H), 7.47-7.48 (m, 2H); 13C-NMR (200 MHz, CDCl3): δ 20.5, 20.6, 20.9, 29.7, 56.3, 57.0, 57.3, 57.5, 57.8, 60.5, 66.6, 66.7, 67.4, 67.6, 68.1, 68.3, 68.6, 68.9, 69.3, 69.7, 70.3, 70.5, 70.8, 71.2, 71.7, 72.0, 72.5, 72.8, 72.9, 73.1, 73.4, 73.9, 74.0, 74.2, 74.4, 74.5, 74.6, 74.8, 75.1, 75.5, 76.3, 76.6, 78.1, 78.3, 78.6, 78.9, 79.9, 80.5, 82.2, 95.6, 95.7, 97.4, 99.5 (×2), 97.3, 100.4, 100.9, 101.2, 102.7, 119.0, 127.1, 127.0, 127.1, 127.3 (×2), 127.4 (×2), 127.5, 127.6 (×2), 127.7 (×2), 127.8 (×2), 127.9, 128.0 (×2), 128.1 (×2), 128.2 (×2), 128.3 (×2), 128.4 (×2), 128.5 (×2), 128.6, 128.7, 131.4, 137.3, 137.8, 138.0 (×2), 138.2 (×2), 138.4, 138.6, 138.8, 139.0, 139.1, 153.8 (×2), 154.3, 169.4, 170.0, 170.1, 170.2. gHMQC (without 1H decoupling): 1JC1,H1=173.7, 171.6, 164.5, 162.1, 161.1, 160.9, 159.1 Hz.
Decasaccharide 26 (100 mg, 21.1 μmol) was dissolved in a mixture of THF//H2O (20 mL/2 mL). Palladium-tetrakis(triphenylphosphine) (12.2 mg, 10.6 μmol) was added to the solution and then the mixture was stirred at room temperature overnight. The mixture was concentrated and then the residue was co-evaporated with toluene (3×5 mL). The solvents were removed in vacuum. Silica gel column chromatography (2:1 hexanes-EtOAc) afforded 99 as a white solid (94 mg, 96%). 1H-NMR (600 MHz, CDCl3): δ 1.87 (s, 3H, Ac), 1.88 (s, 3H, Ac), 1.89 (s, 3H, Ac), 2.00 (s, 3H, Ac), 2.89-293 (m, 2H), 3.03-3.13 (m, 3H), 3.17-3.24 (m, 5H), 3.27-3.29 (m, 5H), 3.32-3.41 (m, 8H), 3.43-3.53 (m, 9H), 3.58-3.60 (m, 4H), 3.64-3.67 (m, 4H), 3.70-3.91 (m, 17H), 4.11-4.26 (m, 5H), 4.21-4.33 (m, 11H), 4.39-4.52 (m, 27H), 4.56-4.73 (m, 19H), 4.78 (d, 1H, J=12 Hz), 4.83-4.98 (m, 7H), 5.02-5.03 (m, 1H), 5.15 (d, 1H, J=3.6 Hz), 6.94-7.27 (m, 108H), 7.38-7.40 (m, 2H).
Compound 99 (90 mg, 19.3 μmol) was dissolved in MeOH (6 mL), AcOH (3 mL) and DCM (3 mL). Zn powder (0.25 g, 3.86 mmol) was added slowly at 0° C. and the mixture was stirred under N2 at room temperature for 2 hour. The mixture was filtered and concentrated to dryness. The resulting residue was diluted with DCM (50 mL), washed with a saturated aqueous solution of NaHCO3 until the pH was around 7 and then the organic layer was dried over Na2SO4 and filtered. The solvent was evaporated to dryness under vacuo without further purification. The mixture of the obtained solid, methanol (1 mL) and Ac2O (99 μL, 0.97 mmol) was stirred at room temperature overnight and then was quenched by adding one drop of water. The mixture was concentrated and then the residue was co-evaporated with toluene (3×5 mL). The solvents were removed in vacuum. Silica gel column chromatography (3:2 toluene-acetone) afforded the desired compound 100 (40 mg, 52% for 2 steps). The obtained compound 100 (27 mg) and Pd(OH)2 (50 mg) in MeOH/H2O (8 mL/1 mL) was stirred under H2 at room temperature for 36 h and then filtered. The filtrate was concentrated to dryness under vacuum and then diluted with H2O (15 mL). The aqueous phase was further washed with DCM (5 mL×3) and EtOAc (5 mL×3) and then the aqueous phase was dried under vacuum. The residue was re-dissolved in H2O (3 mL) and then was lyophilized to afford decasaccharide 27 as a white solid (12.5 mg, 92%).
Disaccharide donor 3 (90 mg, 87 μL), heptasaccharide acceptor 28 (150 mg, 43.5 μL), molecular sieve MS-4 Å and DCM (20 mL) was stirred at room temperature for 30 min. The mixture was cooled to −70° C., followed by addition of TfOH (1.54 μL, 17.4 μmol). The reaction mixture was stirred for 1 hour from −70 to −20° C. and then was quenched with Et3N (50 μL). The mixture was diluted with DCM (100 mL), washed with a saturated aqueous solution of NaHCO3, H2O and then dried over Na2SO4, filtered and concentrated. Silica gel column chromatography (2:1 hexanes-EtOAc) afforded nonasaccharide 29 as a white solid (97 mg, 52%). 1H-NMR (600 MHz, CDCl3): δ 2.04 (s, 3H, COCH3), 2.30 (s, 3H, SPhCH3), 3.04-3.05 (m, 1H), 3.17 (dd, 1H, J=3.6, 10.2 Hz, H-2′), 3.37-3.40 (m, 1H), 3.64-3.80 (m, 9H), 4.01-4.02 (m, 2H), 4.43-4.45 (m, 1H), 4.52 (s, 2H), 4.68-4.90 (m, 4H), 4.74 (d, 1H, J=9.6 Hz, H-1), 5.32 (t, 1H, J=9.6 Hz, H-2), 5.63 (d, 1H, J=3.6 Hz, H-1′), 6.89-6.90 (m, 2H), 7.03-7.05 (m, 2H), 7.14-7.48 (m, 16H), 7.57-7.60 (m, 1H), 8.10-8.11 (m, 2H); 13C-NMR (150 MHz, CDCl3): δ 20.7, 21.1, 55.2, 62.5, 62.6, 68.6, 70.4, 70.8, 72.1, 72.7, 73.3, 74.6, 75.3, 78.9 (×2), 85.1, 85.9, 97.3, 113.7, 127.6, 127.8, 128.0, 128.1 (×2), 128.2, 128.5 (×2), 129.3, 129.5, 129.6, 129.8, 130.0, 133.3, 133.6, 137.2, 137.8, 138.3, 159.1, 165.1, 172.1.
29 (88 mg, 20.5 μmol) was dissolved in a mixture of DCM/MeOH (5 mL/0.5 mL). Hydrazine acetate (2.3 mg, 24.6 μmol) was added and then the mixture was stirred at room temperature under N2 for 5 h. The mixture was concentrated to dryness. Silica gel column chromatography (2:1 hexanes-EtOAc) afforded nonasaccharide acceptor 30 (63.8 mg, 74%). 1H-NMR (600 MHz, CDCl3): δ 2.04 (s, 3H, COCH3), 2.30 (s, 3H, SPhCH3), 3.04-3.05 (m, 1H), 3.17 (dd, 1H, J=3.6, 10.2 Hz, H-2′), 3.37-3.40 (m, 1H), 3.64-3.80 (m, 9H), 4.01-4.02 (m, 2H), 4.43-4.45 (m, 1H), 4.52 (s, 2H), 4.68-4.90 (m, 4H), 4.74 (d, 1H, J=9.6 Hz, H-1), 5.32 (t, 1H, J=9.6 Hz, H-2), 5.63 (d, 1H, J=3.6 Hz, H-1′), 6.89-6.90 (m, 2H), 7.03-7.05 (m, 2H), 7.14-7.48 (m, 16H), 7.57-7.60 (m, 1H), 8.10-8.11 (m, 2H); 13C-NMR (150 MHz, CDCl3): δ 20.7, 21.1, 55.2, 62.5, 62.6, 68.6, 70.4, 70.8, 72.1, 72.7, 73.3, 74.6, 75.3, 78.9 (×2), 85.1, 85.9, 97.3, 113.7, 127.6, 127.8, 128.0, 128.1 (×2), 128.2, 128.5 (×2), 129.3, 129.5, 129.6, 129.8, 130.0, 133.3, 133.6, 137.2, 137.8, 138.3, 159.1, 165.1, 172.1.
Glucosamine donor 4 (22.8 mg, 28.6 μmol), nonasaccharide acceptor 30 (60 mg, 14.3 μL), molecular sieve MS-4 Å and DCM (8 mL) was stirred at room temperature for 30 min. The mixture was cooled to −60° C., followed by addition of TfOH (5.72 μL, 0.5 μmol). The reaction mixture was stirred for 1 hour from −60 to −20° C. and then was quenched with Et3N (20 μL). The mixture was diluted with DCM (50 mL), washed with a saturated aqueous solution of NaHCO3, H2O and then dried over Na2SO4, filtered and concentrated. Silica gel column chromatography (2:1 hexanes-EtOAc) afforded decasaccharide 31 as a white solid (52.3 mg, 76%). 1H-NMR (600 MHz, CDCl3): δ 2.04 (s, 3H, COCH3), 2.30 (s, 3H, SPhCH3), 3.04-3.05 (m, 1H), 3.17 (dd, 1H, J=3.6, 10.2 Hz, H-2′), 3.37-3.40 (m, 1H), 3.64-3.80 (m, 9H), 4.01-4.02 (m, 2H), 4.43-4.45 (m, 1H), 4.52 (s, 2H), 4.68-4.90 (m, 4H), 4.74 (d, 1H, J=9.6 Hz, H-1), 5.32 (t, 1H, J=9.6 Hz, H-2), 5.63 (d, 1H, J=3.6 Hz, H-1′), 6.89-6.90 (m, 2H), 7.03-7.05 (m, 2H), 7.14-7.48 (m, 16H), 7.57-7.60 (m, 1H), 8.10-8.11 (m, 2H); 13C-NMR (150 MHz, CDCl3): δ 20.7, 21.1, 55.2, 62.5, 62.6, 68.6, 70.4, 70.8, 72.1, 72.7, 73.3, 74.6, 75.3, 78.9 (×2), 85.1, 85.9, 97.3, 113.7, 127.6, 127.8, 128.0, 128.1 (×2), 128.2, 128.5 (×2), 129.3, 129.5, 129.6, 129.8, 130.0, 133.3, 133.6, 137.2, 137.8, 138.3, 159.1, 165.1, 172.1.
Decasaccharide 31 (50 mg, 10.4 μmol) was dissolved in MeOH (3 mL), AcOH (1.5 mL) and DCM (1.5 mL). Zn powder (68 mg, 1.04 mmol) was added slowly at 0° C. and the mixture was stirred under N2 at room temperature for 2 hour. The mixture was filtered and concentrated to dryness. The resulting residue was diluted with DCM (30 mL), washed with a saturated aqueous solution of NaHCO3 until the pH was around 7 and then the organic layer was dried over Na2SO4 and filtered. The solvent was evaporated to dryness under vacuo without further purification. The mixture of the obtained solid, methanol (3 mL) and Ac2O (49 μL, 0.52 mmol) was stirred at room temperature overnight and then was quenched by adding one drop of water. The mixture was concentrated and then the residue was co-evaporated with toluene (3×5 mL). The solvents were removed in vacuum. Silica gel column chromatography (3:2 toluene-acetone) afforded the desired compound 101 (21 mg, 49% for 2 steps). Compound 101 (16.5 mg) and Pd(OH)2 (30 mg) in MeOH/H2O (5 mL/0.6 mL) were stirred under H2 at room temperature for 36 h and then filtered. The filtrate was concentrated to dryness under vacuum and then diluted with H2O (10 mL). The aqueous phase was further washed with DCM (5 mL×3) and EtOAc (5 mL×3) and then the aqueous phase was dried under vacuum. The residue was re-dissolved in H2O (2 mL) and then was lyophilized to afford 32 as a white solid (7.6 mg, 95%).
Decasaccharide 32 (3 mg, 1.5 μmol) was dissolved in H2O (4 mL) and 28%-30% NH4OH (0.4 mL) and the reaction mixture was mixed at room temperature for 3.5 hours. The completed reaction, as indicated by MALDI, was subjected to gel filtration on Sephadex G-25 (eluent 0.1M NH4HCO3). Fractions containing product were combined and lyophilized to yield decassacharide 49 (2.7 mg, 98%) as a white amorphous solid.
Enzymes used: HP-39 (β1-3GlcNAc Transferase, Activity=0.5 U/mL), GalT-1 (β1-4Galactosyl Transferase, Activity=3 U/mL), HPα1-3FucT (α1-3Fucosyl Transferase, Activity=1.055 U/mL), rST3Gal-III (α2-3Sialyl Transferase, Activity=1 U/mL), ST6Gal-I (α2-6Sialyl Transferase, Activity=1.777 U/mL
Reactions were monitored by TLC (EtOH/H2O/EtOAC/AcOH=5/2/2/0.1) or by MALDI-TOF MS.
Mono-Sialylation(α2-3) of compounds 27, 32, 46 and 54 to form 33, 41, 47 and 55 respectively.
A glycan (27, 32, 46 and 54) and CMP-Neu5Ac (2 eq) were dissolved in sodium cacodylate buffer (50 mM, pH 7.6) containing BSA (0.1%). CIAP (10 mU) and rST3Gal-III (5.56 mU/μmol substrate) were added to achieve a final concentration of glycan ranging from 2-5 mM. The resulting reaction mixture was incubated at 37° C. for 18 h. In case TLC or MALDI-TOF MS showed starting material remaining, additional CMP-Neu5Ac (1 eq), CIAP (10 mU) and rST3Gal-III (5.56 mU per 1 μmol of substrate) were added and incubated at 37° C. until no starting material could be detected. The reaction mixture was centrifuged and the supernatant subjected to gel filtration over Sephadex G-25 (eluent 0.1 M NH4HCO3). Fractions containing product as detected by MALDI-TOF MS, were combined and lyophilized to give the respective products 33, 41, 47 and 55 as white amorphous solids.
Bis-Fucosylation of compounds 34, 42, 47, 50 and 55 to form 35, 43, 48, 51 and 56 respectively:
A glycan (34, 42, 47, 50 or 55) and GDP-Fucose (2 eq per Fucose) were dissolved in Tris buffer (50 mM, pH 7.5) with MnCl2 (10 mM). To this, CIAP (10 mU) and HPα1-3FucT (18 mU per 1 μmol of substrate) were added to achieve a final concentration of glycan ranging from 2-5 mM. The resulting mixture incubated at 37° C. for 18 h. In case TLC or mass analysis showed starting material or mono-fucosylated intermediate, additional GDP-Fucose (2 eq), CIAP (10 mU) and HPα1-3FucT (18 mU/μmol substrate) were added and incubated at 37° C. until no starting material or mono-fucosylated intermediate could be detected. The reaction mixture was centrifuged and the supernatant subjected to gel filtration on Sephadex G-25 (eluent 0.1 M NH4HCO3). Fractions containing product were combined and lyophilized to give the respective products 35, 43, 48, 51 or 56 as white amorphous solids.
Addition of Galactose to compounds 35, 37, 43, 45, 51 and 53 to form 36, 38, 44, 46, 52 and 54 respectively:
A glycan (35, 37, 43, 45, 51 or 53) and UDP-Galactose (2 eq) were dissolved in Tris buffer (50 mM, pH 7.5) with BSA (0.1%) and MnCl2 (10 mM). To this, CIAP (10 mU) and GalT-1 (5.56 mU/μmol substrate) were added to achieve a final concentration of glycan ranging from 2-5 mM and incubated at 37° C. for 5 h. The resulting reaction mixture was centrifuged and the supernatant subjected to gel filtration on Sephadex G-25 (eluent 0.1 M NH4HCO3). Fractions containing product were combined and lyophilized to give the respective products 36, 38, 44, 46, 52 or 54 as white amorphous solids.
Addition of GlcNAc to compounds 36, 44 and 52 to form 37, 45 and 53:
A glycan (36, 44 or 52) and UDP-GlcNAc (1.5 eq) were dissolved in HEPES buffer (50 mM, pH 7.3), KCl (25 mM), MgCl2 (2 mM) and DTT (1 mM). To this, CIAP (10 mU) and HP-39 (11 mU/μmol substrate) were added to achieve a final concentration of glycan ranging from 2-5 mM and incubated at 37° C. for 6 h. The reaction mixture was centrifuged and the supernatant subjected to gel filtration on Sephadex G-25 (eluent 0.1 M NH4HCO3). Fractions containing product were combined and lyophilized to give the respective products 37, 45 or 53 as white amorphous solids.
Mono-Sialylation(α2-6) of 38 to form 39:
Glycan 38 (500 ng, 170 nmoles) and CMP-Neu5Ac (220 ng, 340 nmoles) were dissolved in sodium cacodylate buffer (81.4 μL, 50 mM, pH 7.6) with BSA (0.1%). To this, CIAP (1.1 μL, 10 mU) and hST6Gal-I (1.6 μL, 9.4 mU/μmol substrate) were added and the resulting reaction mixture was incubated at 37° C. for 18H. The reaction mixture was centrifuged and the supernatant subjected to gel filtration on Sephadex G-25 (eluent 0.1 M NH4HCO3). Fractions containing product were combined and lyophilized to give 39 as a white amorphous solid.
Bis-Sialylation(α2-3) of 49 to form 50:
Glycan 49 (900 ng, 488 nmoles) and CMP-Neu5Ac (1.3 mg, 1.952 μmoles) were dissolved in sodium cacodylate buffer (90 μL, 50 mM, pH 7.6) with BSA (0.1%). To this, CIAP (1.3 μL, 10 mU) and rST3Gal-III (5.42 μL, 11 mU/μmol substrate) were added to achieve a concentration of glycan of 5 mM. The resulting reaction mixture was incubated at 37° C. for 18 h. MALDI-TOF MS showed some starting material, and therefore additional CMP-Neu5Ac (0.5 mg), CIAP (1 μL) and rST3Gal-III (5 μL) were added and incubation was continued at 37° C. for another 18 h to achieve completion of the reaction. The reaction mixture was centrifuged and the supernatant subjected to gel filtration on Sephadex G-25 (eluent 0.1 M NH4HCO3). Fractions containing product were combined and lyophilized to give 50 as a white amorphous solid.
The preceding detailed description and examples have been provided for clarity of understanding only. No unnecessary limitations are to be understood therefrom. The invention is not limited to the exact details shown and described; many variations will be apparent to one skilled in the art and are intended to be included within the invention defined by the claims. It is to be understood that the particular examples, materials, amounts, and procedures are to be interpreted broadly in accordance with the scope and spirit of the invention as set forth herein.
The complete disclosures of all patents, patent applications including provisional patent applications, and publications, and electronically available material (e.g., GenBank amino acid and nucleotide sequence submissions) cited herein are incorporated by reference. Additionally, this patent application incorporates by reference international patent publication WO2010/117803, entitled Heparan Sulfate Synthesis, published Oct. 14, 2010; U.S. Patent Publications 20090041836 A1, entitled “Glycopeptide and Uses Thereof,” published Feb. 12, 2009 and 20090196916 A1, entitled “Liposome-Mediated Ligation,” published Aug. 6, 2009; and International Patent Publications WO 2007/079448, entitled “Three Component Carbohydrate Vaccine,” published Jul. 12, 2007; WO 2007/146070, entitled “Liposome-Mediated Native Chemical Ligation,” published Dec. 21, 2007; and WO 2009/003944, entitled “Glycopeptide and Uses Thereof,” published Jan. 7, 2010.
This application claims the benefit of U.S. Provisional Application Ser. No. 61/467,661, filed Mar. 25, 2011, which is incorporated herein by reference in its entirety.
This invention was made with Government support under Grant No. 1R01GM090269-01 awarded by the National Institutes of Health. The Government has certain rights in this invention.
| Filing Document | Filing Date | Country | Kind | 371c Date |
|---|---|---|---|---|
| PCT/US12/30408 | 3/23/2012 | WO | 00 | 10/17/2013 |
| Number | Date | Country | |
|---|---|---|---|
| 61467661 | Mar 2011 | US |
