Patent Application
20220118104
Antibody-drug conjugates (ADCs) are emerging as a powerful class of anti-tumor agents with efficacy across a range of cancers. ADCs are commonly composed of three distinct features: a cell-binding agent or targeting moiety; a linker; and a cytotoxic agent. The linker component of ADC is an important feature in developing targeted anti-cancer agents that possess a desirable target-specificity, i.e., high activity in tumor cells, but with low activity in healthy cells.
Therefore, there is a need for improved linkers useful for preparing ADCs.
Provided herein are conjugates of Formula (I′):
(D-L)n-(CB)cb (I′)
or a pharmaceutically acceptable salt thereof,
wherein:
In certain embodiments, at least one X and Y′ are positioned in a ortho relationship to each other on Ar. In certain such embodiments, E is 2 or 3. In certain such embodiments where E is 2, both occurrences of X are positioned in an ortho relationship to Y′.
In other embodiments, at least one X and Y′ are positioned in a para relationship to each other on Ar. In certain such embodiments, E is 1.
In certain embodiments, at least one X is positioned in a ortho relationship or para relationship to Y′.
In certain embodiments, at least one Rb other than the Rb attached to Ar represents Z′.
The present invention also relates to compositions (e.g., pharmaceutical compositions) comprising a compound of Formula (I′) and a carrier (e.g., a pharmaceutically acceptable carrier).
In one aspect, the invention provides conjugates of Formula (I′), and compositions comprising such conjugates, e.g., for use in therapy, imaging, as sensors, as molecular switches, as molecular machines, and/or as nanomachines.
In another aspect, the invention further provides conjugates of Formula (I′) and pharmaceutical compositions thereof, for use in a method for delivering an active agent to a cell, wherein the targeting moiety is selected to bind to a molecule associated with a target cell. In particular, the present compounds, conjugates, and compositions may be useful for inhibiting abnormal cell growth or treating a proliferative disorder in a mammal (e.g., a human), such as where the target cell is a cancer cell and the targeting moiety is selected to bind to a molecule associated with the cancer cell (and not associated with healthy cells, or at least preferentially associated with tumor cells rather than healthy cells).
The present conjugates of Formula (I′) and pharmaceutical compositions thereof may be useful for treating conditions such as cancer, rheumatoid arthritis, multiple sclerosis, graft versus host disease (GVHD), transplant rejection, lupus, myositis, infection, immune deficiency such as AIDS, and inflammatory diseases in a mammal (e.g., human).
The present invention relates to compounds and conjugates comprising a cleavable linker and uses thereof. Representative compounds and conjugates disclosed herein comprise an active agent (e.g., a chemical factor, a biological factor, a hormone, an oligonucleotide, a drug, a toxin, a ligand, a probe for detection, etc.) having a desired function or activity, a triggering group that undergoes a chemical reaction (e.g., a physicochemical reaction and/or a biological reaction) under predetermined conditions, and an SO2 functional group positioned in relation to the triggering group on an aryl or heteroaryl ring such that activating the triggering group causes the conjugate to undergo 1,4-elimination, intramolecular cyclization, 1,6-elimination to release the active agent. In some embodiments, the compounds and conjugates disclosed herein further comprise a targeting moiety (e.g., oligopeptide, polypeptide, antibody, etc.) having binding specificity for a desired target receptor or other molecule associated with a target cell.
The meaning of the term “alkyl” is understood in the art. For example, “alkyl” used alone or as part of a larger moiety, such as “alkoxy”, “haloalkyl”, “cycloalkyl”, “heterocycloalkyl”, and the like, may refer to a straight chain or branched hydrocarbon which is completely saturated. Typically, a straight chain or branched alkyl group is an acyclic group having from 1 to about 20 carbon atoms, preferably from 1 to about 10 carbon atoms, unless otherwise defined. Examples of straight chain and branched alkyl groups include, but are not limited to, methyl, ethyl, propyl, isopropyl, n-butyl, sec-butyl, tert-butyl, n-pentyl, n-hexyl, n-heptyl, and n-octyl. A C1-C6 straight chain or branched alkyl group is also referred to as a “lower alkyl” group. Alkyl groups having two open valences are sometimes referred to with an “ene” suffix, as in alkylene. Exemplary alkylene groups include methylene, ethylene, propylene, and the like.
Moreover, the term “alkyl” (or “lower alkyl”) may include both “unsubstituted alkyls” and “substituted alkyls”, the latter of which refers to alkyl moieties having substituents replacing a hydrogen on one or more carbons of the hydrocarbon backbone. Such substituents, if not otherwise specified, can include, for example, a halogen, a hydroxyl, a carbonyl (such as a carboxyl, an alkoxycarbonyl, a formyl, or an acyl), a thiocarbonyl (such as a thioester, a thioacetate, or a thioformate), an alkoxyl, a phosphoryl, a phosphate, a phosphonate, a phosphinate, an amino, an amido, an amidine, an imine, a cyano, a nitro, an azido, a sulfhydryl, an alkylthio, a sulfate, a sulfonate, a sulfamoyl, a sulfonamido, a sulfonyl, a heterocyclyl, an aralkyl, or an aromatic or heteroaromatic moiety. The skilled artisan will understand that the moieties substituted on the hydrocarbon chain can themselves be substituted, if appropriate. For example, the substituents of a substituted alkyl may include substituted and unsubstituted forms of alkyl, amino, azido, imino, amido, phosphoryl (including phosphonate and phosphinate), sulfonyl (including sulfate, sulfonamido, sulfamoyl and sulfonate), and silyl groups, as well as ethers, alkylthios, carbonyls (including ketones, aldehydes, carboxylates, and esters), —CF3, —CN and the like. Exemplary substituted alkyls are described below. Cycloalkyls can be further substituted with alkyls, alkenyls, alkoxys, alkylthios, aminoalkyls, carbonyl-substituted alkyls, —CF3, —CN, and the like.
The term “Cx-Cy” when used in conjunction with a chemical moiety, such as, for example, acyl, acyloxy, alkyl, alkenyl, alkynyl, or alkoxy may include groups that contain from x to y carbons in the chain, wherein “x” and “y” are integers selected from 1 to about 20, and wherein x is an integer of lesser value than y, and x and y are not the same value. For example, the term “Cx-Cy-alkyl” refers to substituted or unsubstituted saturated hydrocarbon groups, including straight-chain alkyl and branched-chain alkyl groups that contain from x to y number of carbons in the chain, including haloalkyl groups such as trifluoromethyl and 2,2,2-trifluoroethyl, etc. The terms “C2-Cy-alkenyl” and “C2-Cy-alkynyl” refer to substituted or unsubstituted unsaturated aliphatic groups analogous in length and possible substitution to the alkyls described above, but that contain at least one double or triple bond respectively. As applied to heteroalkyls, “Cx-Cy” indicates that the group contains from x to y number of carbons and heteroatoms in the chain. As applied to carbocyclic structures, such as aryl and cycloalkyl groups, “Cx-Cy” indicates that the ring comprises x to y number of carbon atoms in the ring.
The meaning of the term “alkoxy” is understood in the art, and, for example, may refer to an alkyl group, preferably a lower alkyl group, having an oxygen attached thereto. Representative alkoxy groups include methoxy, ethoxy, propoxy, tert-butoxy and the like.
The terms “hal”, “halo”, and “halogen” are used interchangeably throughout, and refer to fluorine or fluoro (F), chlorine or chloro (Cl), bromine or bromo (Br), or iodine or iodo (I).
The meaning of the term “cycloalkyl” is understood in the art, and, for example, may refer to a substituted or unsubstituted cyclic hydrocarbon which is completely saturated. Cycloalkyl includes monocyclic and bicyclic rings. Typically, a monocyclic cycloalkyl group has from 3 to about 10 carbon atoms, more typically 3 to 8 carbon atoms, unless otherwise defined. The second ring of a bicyclic cycloalkyl may be selected from saturated, unsaturated, and aromatic rings. Cycloalkyl includes bicyclic molecules in which one, two, or three or more atoms are shared between the two rings. The term “fused cycloalkyl” refers to a bicyclic cycloalkyl in which each of the rings shares two adjacent atoms with the other ring. The second ring of a fused bicyclic cycloalkyl may be selected from saturated, unsaturated and aromatic rings. A “cycloalkenyl” group is a cyclic hydrocarbon containing one or more double bonds.
The meaning of the term “aryl” is understood in the art, and, for example, may refer to substituted or unsubstituted single-ring aromatic groups in which each atom of the ring is carbon. Preferably, the ring is a 5- to 7-membered ring, more preferably a 6-membered ring. The term “aryl” also includes polycyclic ring systems having two or more cyclic rings in which two or more carbons are common to two adjoining rings wherein at least one of the rings is aromatic, e.g., the other cyclic rings can be cycloalkyls, cycloalkenyls, cycloalkyls, aryls, heteroaryls, and/or heterocyclyls. Aryl groups include benzene, naphthalene, phenanthrene, phenol, aniline, and the like.
The meaning of the terms “heterocyclyl” and “heterocycle” are understood in the art, and, for example, may refer to substituted or unsubstituted non-aromatic ring structures, preferably 3- to 10-membered rings, more preferably 3- to 7-membered rings, whose ring structures include at least one heteroatom, preferably one to four heteroatoms, more preferably one or two heteroatoms. Such heterocycles also include polycyclic ring systems having two or more cyclic rings in which two or more carbons are common to two adjoining rings wherein at least one of the rings is heterocyclic, e.g., the other cyclic rings can be cycloalkyls, cycloalkenyls, cycloalkyls, aryls, heteroaryls, and/or heterocyclyls. Heterocyclyl groups include, for example, piperidine, piperazine, pyrrolidine, morpholine, lactones, lactams, and the like.
The meaning of the term “heteroaryl” is understood in the art, and, for example, may refer to substituted or unsubstituted aromatic single ring structures, preferably 5- to 7-membered rings, more preferably 5- to 6-membered rings, whose ring structures include at least one heteroatom, preferably one to four heteroatoms, more preferably one or two heteroatoms. The terms “heteroaryl” and “hetaryl” also include polycyclic ring systems having two or more cyclic rings in which two or more carbons are common to two adjoining rings wherein at least one of the rings is heteroaromatic, e.g., the other cyclic rings can be cycloalkyls, cycloalkenyls, cycloalkyls, aryls, heteroaryls, and/or heterocyclyls. Heteroaryl groups include, for example, pyrrole, furan, thiophene, imidazole, oxazole, thiazole, pyrazole, pyridine, pyrazine, pyridazine, and pyrimidine, and the like.
The term “substituted” refers to moieties having substituents replacing a hydrogen on one or more carbons or heteroatoms of the moiety. The skilled artisan will understand that “substitution” or “substituted with” includes the implicit proviso that such substitution is in accordance with permitted valence of the substituted atom and the substituent, and that the substitution results in a stable compound, e.g., which does not spontaneously undergo transformation such as by rearrangement, cyclization, elimination, etc. As used herein, the term “substituted” is contemplated to include all permissible substituents of organic compounds.
In some embodiments, the permissible substituents include acyclic and cyclic, branched and unbranched, carbocyclic and heterocyclic, aromatic and non-aromatic substituents of organic compounds. The permissible substituents can be one or more and the same or different for appropriate organic compounds. For purposes of this invention, the heteroatoms such as nitrogen may have hydrogen substituents and/or any permissible substituents of organic compounds described herein which satisfy the valences of the heteroatoms. Substituents can include any substituents described herein, such as, for example, a halogen, a hydroxyl, a carbonyl (such as a carboxyl, an alkoxycarbonyl, a formyl, or an acyl), a thiocarbonyl (such as a thioester, a thioacetate, or a thioformate), an alkoxyl, a phosphoryl, a phosphate, a phosphonate, a phosphinate, an amino, an amido, an amidine, an imine, a cyano, a nitro, an azido, a sulfhydryl, an alkylthio, a sulfate, a sulfonate, a sulfamoyl, a sulfonamido, a sulfonyl, a heterocyclyl, an alkyl, an aralkyl, or an aromatic or heteroaromatic moiety. The skilled artisan will understand that substituents can themselves be substituted, if appropriate. Unless specifically stated as “unsubstituted”, references to chemical moieties herein are understood to include substituted variants. For example, reference to an “aryl” group or moiety implicitly includes both substituted and unsubstituted variants.
The term “subject” to which administration is contemplated includes, for example, humans (i.e., a male or female of any age group, e.g., a pediatric subject (e.g., infant, child, adolescent) or adult subject (e.g., young adult, middle-aged adult or senior adult)) and/or other primates (e.g., cynomolgus monkeys, rhesus monkeys); mammals, including commercially relevant mammals such as cattle, pigs, horses, sheep, goats, cats, and/or dogs; and/or birds, including commercially relevant birds such as chickens, ducks, geese, quail, and/or turkeys. Preferred subjects are humans.
As used herein, a therapeutic that “prevents” a disorder or condition can, for example, refer to a compound that, in a statistical sample, reduces the occurrence of the disorder or condition in the treated sample relative to an untreated control sample, or delays the onset or reduces the severity of one or more symptoms of the disorder or condition relative to the untreated control sample.
The term “treating” includes prophylactic and/or therapeutic treatments. The term “prophylactic or therapeutic” treatment is art-recognized and includes administration to the host of one or more of the subject compositions. If it is administered prior to clinical manifestation of the unwanted condition (e.g., disease or other unwanted state of the host animal) then the treatment is prophylactic (i.e., it protects the host against developing the unwanted condition), whereas if it is administered after manifestation of the unwanted condition, the treatment is therapeutic, (i.e., it is intended to diminish, ameliorate, or stabilize the existing unwanted condition or side effects thereof).
In certain embodiments, compounds and conjugates disclosed herein may be used alone or conjointly administered with another type of therapeutic compound or agent. As used herein, the phrase “conjoint administration” refers to any form of administration of two or more different therapeutic compounds such that the second compound is administered while the previously administered therapeutic compound is still effective in the body (e.g., the two compounds are simultaneously effective in the subject, which may include synergistic effects of the two compounds). For example, the different therapeutic compounds and conjugates can be administered either in the same formulation or in a separate formulation, either concomitantly or sequentially. In certain embodiments, the different therapeutic compounds and conjugates can be administered within one hour, 12 hours, 24 hours, 36 hours, 48 hours, 72 hours, or a week of one another. Thus, a subject who receives such treatment can benefit from a combined effect of different therapeutic compounds and conjugates.
The terms “abnormal cell growth” and “proliferative disorder” are used interchangeably in this application. “Abnormal cell growth,” as used herein, unless otherwise indicated, refers to cell growth that is independent of normal regulatory mechanisms (e.g., loss of contact inhibition). This includes, for example, the abnormal growth of: (1) tumor cells (tumors) that proliferate by expressing a mutated tyrosine kinase or over-expression of a receptor tyrosine kinase; (2) benign and malignant cells of other proliferative diseases in which aberrant tyrosine kinase activation occurs; (3) any tumors that proliferate by receptor tyrosine kinases; (4) any tumors that proliferate by aberrant serine/threonine kinase activation; and (5) benign and malignant cells of other proliferative diseases in which aberrant serine/threonine kinase activation occurs.
The terms “cancer” and “cancerous” refer to or describe the physiological condition in mammals that is typically characterized by unregulated cell growth. A “tumor” comprises one or more cancerous cells. Examples of cancer include, but are not limited to, carcinoma, lymphoma, blastoma, sarcoma, and leukemia or lymphoid malignancies. More particular examples of such cancers include squamous cell cancer (e.g., epithelial squamous cell cancer), lung cancer including small-cell lung cancer, non-small cell lung cancer (“NSCLC”), adenocarcinoma of the lung and squamous carcinoma of the lung, cancer of the peritoneum, hepatocellular cancer, gastric or stomach cancer including gastrointestinal cancer, pancreatic cancer, glioblastoma, cervical cancer, ovarian cancer, liver cancer, bladder cancer, hepatoma, breast cancer, colon cancer, rectal cancer, colorectal cancer, endometrial or uterine carcinoma, salivary gland carcinoma, kidney or renal cancer, prostate cancer, vulval cancer, thyroid cancer, hepatic carcinoma, anal carcinoma, penile carcinoma, acute leukemia, as well as head/brain and neck cancer.
The present disclosure provides conjugates of Formula (I′):
(D-L)n-(CB)cb (I′)
or a pharmaceutically acceptable salt thereof,
wherein:
In certain embodiments, each X is positioned in a ortho relationship or para relationship to Y′ on Ar.
In certain embodiments, at least one X and Y′ are positioned in a ortho relationship to each other on Ar. In certain such embodiments, E is 2 or 3. In certain such embodiments where E is 2, both occurrences of X are positioned in an ortho relationship to Y′.
In other embodiments, at least one X and Y′ are positioned in a para relationship to each other on Ar. In certain such embodiments, E is 1.
In certain embodiments, at least one X is positioned in a ortho relationship or para relationship to Y′.
In certain preferred embodiments, at least one Rb other than the Rb attached to Ar represents Z′.
Each active agent can be any suitable active agent, as described in greater detail below. While many traditional conjugation methods require having certain functional groups, such as amines or hydroxyl groups, to form a stable linkage, the disclosure herein provides strategies for forming connections using functional groups, such as phenols and tertiary amines, to form stable linkages in the conjugates disclosed herein, while still permitting release under the predetermined conditions that activate the triggering group. Upon activation of the triggering group, the aryl/heteroaryl unit undergoes elimination, (e.g., 1,6-elimination for a group in the para-position), releasing SO2 and expelling the moiety (Q)q-(L′)w-H, where the H is bonded to the heteroatom of Q or L′ that was formerly attached to the SO2 moiety. For groups in an ortho relationship, activation of the triggering group can initiate analogous 1,4-elimination and/or intramolecular cyclization, thereby expelling (Q)q-(L′)w-H. Examples of 1,6-elimination and 1,4-elimination and/or cyclization triggered by the cleavage of a triggering group are shown in Schemes 1 and 2.
Many suitable triggering groups are known in the art, and exemplary triggering groups and the conditions that activate them are discussed below, such as moieties described for Y below. Some triggering groups include the N, O, or S atom, but in a non-nucleophilic form. For example, an NO2 group is a triggering group that, under reductive conditions, is reduced to an NH2 or NHOH group that can react with the SO2, and initiate the elimination reaction. An acetate group is a triggering group that, under hydrolytic conditions, is hydrolyzed to a hydroxyl group capable of triggering 1,6-elimination of the self-immolative segment. Other triggering groups do not include the N, O, or S atom, but when activated are converted to a nucleophilic N, O, or S atom. For example, a boronate group is a triggering group that, under oxidative conditions (such as peroxide), is converted to a hydroxyl group that can react with the SO2. Preferably, the triggering group is selected such that the conditions that activate it do so selectively, without cleaving or degrading other portions of the conjugate, such as the targeting moiety. In some embodiments, once the nucleophilic N, O, or S atom is generated, that atom intramolecularly attacks the SO2 moiety to form a ring, expelling the moiety (Q)q-(L′)w-H, where the H is bonded to the heteroatom of Q or L′ that was formerly attached to the SO2 moiety.
In embodiments where w is 0, q is 1 and Q is directly attached to the SO2 via a heteroatom. Accordingly, activating the triggering group generates a nucleophilic heteroatom that intramolecularly attacks the SO2 moiety to form a ring, expelling the active agent Q-H, where the H is bonded to the heteroatom formerly attached to SO2.
In embodiments where w is 1, L′ may be selected to permit attachment of multiple occurrences of Q, which may be the same or different. Accordingly, each instance of Q is indirectly attached to the SO2 via a spacer moiety. In such embodiments, activating the triggering group generates a nucleophilic heteroatom that intramolecularly attacks the SO2 moiety to form a ring, expelling the moiety (Q)q-L′-H, where the H is bonded to the heteroatom in L′ that was formerly attached to SO2. In such embodiments, the released heteroatom triggers an intramolecular reaction that expels the active agent(s) Q (such as if Q has a tertiary amine that was attached to L′ as a quaternary ammonium) or Q-H. For example, the heteroatom may undergo an intramolecular cyclization reaction with an ester moiety formed with a hydroxyl of Q-H, forming a ring and ejecting the active agent Q-H. Alternatively, the heteroatom may undergo an intramolecular tautomerization that expels the active agent Q or Q-H.
Ar can be any suitable ring, including a ring of a bicycle or other polycycle, so that the moieties that undergo intramolecular cyclization are held in close proximity to facilitate that reaction after activation of the triggering group. The planar character of aromatic and heteroaromatic rings is preferred, as the rigid geometry of substituents on such rings ensures favorable placement of the reactive moieties, although other types of rings, such as cycloalkenyl or heterocycloalkenyl, can enforce similar geometries. A five- or six-membered ring, and/or the number or identities of heteroatoms in the ring, and/or substituents (e.g., electron-donating or electron-withdrawing substituents) on other the ring, may be selected to modulate the rate of cyclization based on the resulting bond angles of the ring. Similarly, the more flexible conformations of cycloalkyl and heterocyclyl rings can be useful when it is desired to slow the rate of intramolecular cyclization.
Z′ can be any suitable linking group that connects Ar to one or more CB groups. Typically, the linking group should be sufficiently hydrophilic to promote water-solubility (a solubilizing group) and discourage aggregation of the conjugate, such as by including moieties such as polyethylene glycol (PEG) moieties, peptide sequences, charge-bearing moieties (such as carboxylates, amines, nitrogen-containing rings, etc.), etc. to balance the hydrophobic character of any alkyl chains that may be included. Because it is often advantageous to prepare conjugates in a modular fashion, Z′ may contain a linking unit, a functional group that results from the conjugation of one reactive moiety to another. Representative linking units are discussed in greater detail below (e.g., in connection with the variable Z), and common linking groups include amides, triazoles, oximes, carbamates, etc. Representative Z′ groups include L1′-Z groups as discussed in greater detail below. In some embodiments, all of the D-L groups attached to each CB are identical, while in other embodiments, each CB may be attached to two or more distinct D-L groups. For example, some D-L groups may have a triggering group that is activated under a first condition, while other D-L groups may have a triggering group that is activated under a second condition, so that, for example, one active agent can be selectively released under the first condition, but a second active agent can be selectively released under the second condition.
The disclosure also provides compounds that may serve as intermediates or reagents in the formation of group D-L in formula (I′), as described in Formula (I″). Thus, in some embodiments, provided herein are compounds of Formula (Ia):
or a pharmaceutically acceptable salt thereof, wherein:
In some embodiments, provided herein are compounds of Formula (Ia):
or a pharmaceutically acceptable salt thereof, wherein:
In certain embodiments, each X is positioned in a ortho relationship or para relationship to Y′ on Ar.
In certain embodiments, at least one X and Y′ are positioned in a ortho relationship to each other on Ar. In certain such embodiments, E is 2 or 3. In certain such embodiments where E is 2, both occurrences of X are positioned in an ortho relationship to Y′.
In other embodiments, at least one X and Y′ are positioned in a para relationship to each other on Ar. In certain such embodiments, E is 1.
In certain embodiments, at least one X is positioned in a ortho relationship or para relationship to Y′.
In certain embodiments, at least one Rb other than the Rb attached to Ar represents Z′.
In certain embodiments of Formulas (I′) and (Ia), —Y′ is —N(Ra)—, —O—, or —S—. In some such embodiments, TG is a β-galactoside, β-glucuronide, or a combination of β-galactoside and β-glucuronide.
In some embodiments of Formulas (I′) and (Ia), (L′)w links each Q to the —SO2—; and each Q is an active agent linked to one of the L′ groups through a heteroatom, preferably O or N, and forming an —O—, an —OC(O)—, an —OC(O)O— or an —OC(O)NH— linkage including the heteroatom of Q.
In other embodiments, (Q)q-(L′)w- is selected from:
In some such embodiments, (Q)q-(L′)w- is selected from:
Further, the invention provides intermediates for preparing conjugates according to Formula (I′) or compounds according to Formula (Ia), wherein (Q)q-(L′)w in those Formulas is replaced by a leaving group, such as a halogen (preferably fluorine), to permit attachment of (Q)q-(L′)w.
In certain such embodiments, Z′ includes a reactive group (e.g., a precursor group, as discussed in greater detail below with respect to Z) that can be used to attach the compound to a triggering agent, such as a CB (e.g., to prepare a compound of Formula (I′) as discussed in greater detail above), to a solid surface (e.g., to form a bead, nanoparticle, solid-supported array, or sensor particles), or to any other molecule or support of interest.
In certain embodiments, Z′ includes a reactive group (e.g., a precursor group, as discussed in greater detail below with respect to Z) that can be used to attach the compound to a targeting moiety, such as a CB.
In certain preferred embodiments, the compound of Formula (I′) is selected from:
wherein:
In other embodiments, the compound of Formula (I′) is selected from:
In other embodiments, the compound of Formulation (I′) is selected from:
In still other embodiments, the compound of Formula (I′) is selected from:
In other embodiments, the compound of Formula (I′) is selected from:
In other embodiments, the compound of Formula (I′) is selected from:
In certain preferred embodiments, Z is a linking group having a structure of Formula (F), (G), (H), (J), (K), (L), (M), or (N):
wherein:
In other embodiments, Z is a linking group having a structure of Formula (F′), (G′), (H′), (J′), (K′), (L′), (M′), or (N′):
s (F′)
In certain preferred embodiments, CB is selected from:
In certain preferred embodiments, (Q)q-(L′)w is selected from:
wherein * represents the point of attachment of (Q)q-(L′)w- to —SO2—.
In some embodiments, (Q)q-(L′)w is selected from:
wherein * represents the point of attachment of (Q)q-(L′)w- to —SO2—.
Also provided herein are compounds of Formula (I):
or —Y′-TG, preferably Y is —NO2, —OC(O)(CH2)rC(O)R1, —O(CH2)r—Ar1—NO2, —NHNH2, —BR2R3,
r is an integer having a value of 1, 2, 3, 4, or 5;
In some embodiments, the compound of Formula (I) comprises a functional group (e.g., Y) capable of inducing intramolecular cyclization by external stimulation. In certain embodiments, said functional group is introduced at an ortho-position and/or para-position with respect to each X.
In some embodiments, R′ is C1-C6-alkyl, C6-C14-aryl, or C2-C20-heteroaryl.
In some embodiments, Ar is a C5-C20-aromatic ring, a C2-C20-heteroaromatic ring, a C2-C30-fused ring, or a C5-C20-aromatic ring-C2-C20-heteroaromatic ring. For example, Ar may be a benzene ring, a naphthalene ring, a pyridine ring, or a quinolone ring. Preferably, Ar is a benzene ring or a naphthalene ring. In some embodiments, the compound of Formula (I) is a compound having a structure according to Formula (II):
or a pharmaceutically acceptable salt thereof.
In other embodiments, the compound of Formula (I) is a compound having a structure according to Formula (III):
or a pharmaceutically acceptable salt thereof.
In other embodiments, the compound of Formula (I) is a compound having a structure according to Formula (IV):
or a pharmaceutically acceptable salt thereof.
In other embodiments, the compound of Formula (I) is a compound having a structure according to Formula (V):
or a pharmaceutically acceptable salt thereof.
In other embodiments, the compound of Formula (I) is a compound having a structure according to Formula (VI):
or a pharmaceutically acceptable salt thereof.
In other embodiments, the compound of Formula (I) is a compound having a structure according to Formula (VII):
or a pharmaceutically acceptable salt thereof.
In other embodiments, the compound of Formula (I) is a compound having a structure according to Formula (VIII):
or a pharmaceutically acceptable salt thereof.
In other embodiments, the compound of Formula (I) is a compound having a structure according to Formula (IX):
In some embodiments, the compound is a compound of Formula (I), (II), (III), (IV), (V), (VI), (VII), (VI), or (IX), wherein R is selected from hydrogen, halogen (hal), aldehyde, acetal, ketal, —R*, —OR*, —SR*, —NR*R**, —C(hal)3, —CN, —OCN, —SCN, —N═C═O, —NCS, —NO, —NO2, —N3, —NC, —C(O)R*, —OC(O)R*, —OS(O)R*, —S(O)2R*, —S(O)2OR*, —OS(O)OR*, —OS(O)2OR*, —S(O)NR*R**, —S(O)2NR*R**, —S(O)R*, —OP(O)(OR*)2, —P(O)(OR*)2, —OP(OR*)2, —OP(OR*)N(R**)2, —OP(O)(OR*)N(R**)2, —PR*, —P(O)2, —P(O)R*, —C(O)hal, —C(S)R*, —CO2R*, —C(S)OR*, —C(O)SR*, —C(S)SR*, —C(O)NR*R**, —C(S)NR*R**, —C(═NR*)NR*R**, —NR*C(O)R**, —NR*S(O)20R**, —NR*S(O)R**, —NR*C(O)NR**, —SS—R*, or —R*SSR**, wherein: R* and R** are each independently hydrogen, C1-C18 alkyl, C6-C20 aryl, C3-C15 heterocycle or C3-C20 heteroaryl.
In some embodiments, the compound is a compound of Formula (I), (II), (III), (IV), (V), (VI), (VII), (VIII), or (IX), wherein R is hydrogen or *-(La-A1-Lb-Lc-Z)m-CB; wherein:
phosphonic acid (—P(═O)(OH)2), ketone, C8-C10 cycloalkynyl, —OH, —NHOH, —NHNH2, —SH, carboxylic acid (—COOH), acetylene (—C≡CH), azide (—N3), amino (—NH2), sulfonic acid (—SO3H), an alkynone derivative (—C(O)C≡C—Ra, wherein Ra is C1-C10-alkyl), and dihydrogen phosphate (—OP(═O)(OH)2);
In some embodiments, the compound is a compound of Formula (I), (II), (III), (IV), (V), (VI), (VII), (VIII), or (IX), wherein R is hydrogen or *-La-A1-Lb-Lc-Z; wherein:
phosphonic acid (—P(═O)(OH)2), ketone, C8-C10 cycloalkynyl, —OH, —NHOH, —NHNH2, —SH, carboxylic acid (—COOH), acetylene (—C≡CH), azide (—N3), amino (—NH2), sulfonic acid (—SO3H), an alkynone derivative (—C(O)C≡C—Ra, wherein Ra is C1-C10-alkyl), and dihydrogen phosphate (—OP(═O)(OH)2).
In some embodiments, the compound is a compound of Formula (I), (II), (III), (IV), (V), (VI), (VII), (VIII), or (IX), wherein R is *(-La-A1-Lb-Lc-Z)m-CB; wherein:
In some embodiments, the compound is a compound of Formula (I), (II), (III), (IV), (V), (VI), (VII), (VI), or (IX), wherein L′ is a C7-C30 hydrocarbon spacer further comprising —O—, —OC(O)—, —O(CO)O— or —OC(O)NR″″—.
In some embodiments, the compound is a compound of Formula (I), (II), (III), (IV), (V), (VI), (VII), (VI), or (IX), wherein Q is -L′-(Q′)w selected from:
wherein:
In certain embodiments, -L′-(Q1)w is selected from
The at least one functional group of Q, Q1, or Q2 selected from —OH, —NR5R6, —SH, and —COOH serves as a connection point of the active agent to L′. The functional group may exist as part of an ester, thioester, carbonate, carbamate, amide, sulfonamide, sulfonate, sulfate, or other suitable linkage; that is, the —OH, —NR5R6, —SH, and —COOH moiety does not exist as such while the active agent is part of the conjugate.
In some embodiments, Q2 is an active agent comprising —NR5R6, wherein the active agent is capable of binding in a quaternary amine structure, for instance the —NR5R6 moiety in the active agent is capable of forming a quaternary amine linkage with L′.
In some embodiments of Formulas (I″), (Ia), (I), (II), (III), (IV), (V), (VI), (VII), (VIII), or (IX), R4 is substituted alkyl, aryl, or heteroaryl. In some such embodiments, R4 is substituted with one or more substituents selected from C1-C10 alkyl, —(CH2)uNH2, —(CH2)uNRu1Ru2, —(CH2)uCO2H, —(CH2)uCO2Ru1, and —(CH2)uSO2Ru3, wherein Ru1, Ru2, and Ru3 are each independently hydrogen, C1-C15-alkyl, C6-C20-aryl, or C3-C10-heteroaryl; and u is an integer having a value of 1 to about 10.
In some embodiments of Formulas (I″), (Ia), (I), (II), (III), (IV), (V), (VI), (VII), (VIII), or (IX), R5 and/or R6 is heteroaryl substituted with —NR7R8, wherein R7 and R8 are each independently hydrogen, C1-C6-alkyl, C3-C9-cycloalkyl, or C5-C14-aryl.
In some embodiments of Formulas (I″), (Ia), (I), (II), (III), (IV), (V), (VI), (VII), (VIII), or (IX), Q or -(L′)w-(Q)q is selected from:
wherein * represents the point of attachment of Q or (Q)q-(L′)w- to —SO2—.
In some embodiments of Formulas (I″), (Ia), (I), (II), (III), (IV), (V), (VI), (VII), (VIII), or (IX), Q or -(L′)w-(Q)q is selected from:
wherein * represents the point of attachment of Q or (Q)q-(L′)w- to —SO2—.
In certain embodiments, provided herein is a compound of Formula (I), (II), (III), (IV), (V), (VI), (VII), (VIII), or (IX), wherein:
In certain embodiments, the compound of Formula (I), (II), (III) (IV), (V), (VI), (VII), (VIII), or (IX), is selected from:
wherein:
R21 and R22 are each independently hydrogen or acetyl;
R is hydrogen, *-La-A1-Lb-Lc-Z, or a group having a structure of Formula (F), (G), (H), (J), (K), (L), (M), or (N):
phosphonic acid (—P(═O)(OH)2), ketone, C8-C10-cycloalkynyl, —OH, —NHOH, —NHNH2, —SH, carboxylic acid (—COOH), acetylene (—C≡CH), azide (—N3), amino (—NH2), sulfonic acid (—SO3H), an alkynone derivative (—C(O)C≡C—Ra, wherein Ra is C1-C10 alkyl), or dihydrogen phosphate (—OP(═O)(OH)2);
and
Q is selected from:
wherein * represents the point of attachment of Q to —SO2—.
In some embodiments, the compound of Formula (I), (II), (III) (IV), (V), (VI), (VII), (VIII), or (IX), is selected from:
wherein:
R1 is C1-C6 alkyl;
R21 and R22 are each independently hydrogen or acetyl;
R is hydrogen, *-La-A1-Lb-Lc-Z, or a group having a structure of Formula (F), (G), (H), (J), (K), (L), (M), or (N):
phosphonic acid (—P(═O)(OH)2), ketone, C8-C10-cycloalkynyl, —OH, —NHOH, —NHNH2, —SH, carboxylic acid (—COOH), acetylene (—C≡CH), azide (—N3), amino (—NH2), sulfonic acid (—SO3H), an alkynone derivative (—C(O)C≡C—Ra, wherein Ra is C1-C10 alkyl), or dihydrogen phosphate (—OP(═O)(OH)2);
and
wherein * represents the point of attachment of Q to —SO2—.
Release of the Active Agent
As described above, in certain embodiments, the compounds and conjugates disclosed herein are capable of dissociating one or more active agents (represented by Q, Q1, Q2) through an intramolecular cyclization reaction following a chemical reaction that activates the triggering group. In certain embodiments, the chemical reaction is a physicochemical reaction and/or a biochemical reaction.
In some embodiments, the compounds and conjugates disclosed herein comprise a nucleophilic functional group (Y or Y′) introduced at an adjacent atom on Ar with respect to X (e.g., —CH2—). Typically, the nucleophilic functional group is masked by a triggering group (TG), as further detailed below. Upon activation, the triggering group releases the nucleophilic functional group to react with the nearby SO2 moiety in an intramolecular cyclization and/or 1,4-elimination, ultimately releasing the one or more active agents (Q, Q1, or Q2) or their protonated forms. In some such embodiments, one or more active agents are released through an intramolecular cyclization reaction after a chemical reaction, a physicochemical reaction and/or a biochemical reaction (see, for example, Reaction Scheme 1), or the active agent is released through 1,6-elimination or 1,4-elimination after the intramolecular cyclization reaction (see, for example, Reaction Scheme 2).
As an example, the mechanism when Y is —Y′-TG is shown in Reaction Scheme 1:
The mechanism when Q is
shown in Reaction Scheme 2:
The mechanism of a multi-substituted structure is shown in Reaction Scheme 3:
In some embodiments, Q1 when released is an active agent comprising at least one functional group selected from —OH, —NH—, —SH and —COOH. According to these embodiments, as further described herein, Q1 is conjugated to a compound as described herein by the —OH, —NH—, —SH and —COOH, for instance through a functional group selected from ester, amide, thioester, carbamate, urea, oxime, hydrazone, etc. In some such embodiments, Q2 is used in place of Q1, and Q2 is an amine group-containing drug. In other embodiments, Q2 is an active agent capable of binding with an ammonium unit. In still other embodiments, Q2 is capable of being dissociated in its original form having an amine group upon release of Q2 release, wherein the active agent may be a drug, a toxin, an affinity ligand, a probe for detection, or a combination thereof.
In some embodiments, the compounds and conjugates disclosed herein are chemically and physiologically stable. In some such embodiments, the compounds and conjugates disclosed herein reach a desired target cell in a state wherein there is little dissociation of the active agent in the blood, thereby selectively releasing the drug.
Triggering Groups (TGs)
In some embodiments, the conjugates of the present invention include a triggering group (TG). TGs are groups capable of being cleaved, preferably selectively cleaved, by a chemical reaction, such as a biological reaction. Generally, triggering groups serve to mask the nucleophilic nature of the Y or Y′ group, thereby providing stability (e.g., by preventing self-immolation or intramolecular cyclization prior to the conjugate reaching a target location or experiencing a predetermined trigger condition) to the compounds and conjugates disclosed herein. Upon activation, the triggering group releases the nucleophilic Y or Y′ group and allows for self-immolation or intramolecular cyclization to occur, as described above.
In some embodiments, the TG comprises a sequence (such as a peptide sequence, e.g., dipeptide (Val-Cit, Val-Ala), or a moiety recognized by TEV, trypsin, thrombin, cathepsin B, cathepsin D, cathepsin K, caspase 1, matrix metalloproteinase (MMP), and the like, which can be hydrolyzed by an enzyme (e.g., an oxidoreductase, a transferase, a hydrolase, a lyase, an isomerase, a ligase, etc.) and/or may include a moiety selected from a phosphodiester, a phospholipid, an ester, a β-galactose, a β-glucose, a fructose, an oligosugar, and the like.
In some embodiments, the TG comprises a reactive chemical moiety or functional group that can be cleaved under nucleophilic reagent conditions (e.g., a silyl ether, a 2-N-acyl nitrobenzenesulfonamide, an unsaturated vinyl sulfide, a sulfonamide after activation, a malondialdehyde-indole derivative, a levulinoyl ester, a hydrazone, or an acyl hydrazone).
In some embodiments, the TG may comprise a reactive chemical moiety or functional group that can be cleaved under basic reagent conditions (e.g., a 2-cyanoethyl ester, an ethylene glycolyl disuccinate, a 2-sulfonylethyl ester, an alkyl thioester, or a thiophenyl ester).
In some embodiments, the TG may comprise a reactive chemical moiety or functional group that can be cleaved by photo-irradiation (e.g., 2-nitrobenzyl derivative, phenacyl ester, β-quinolinyl benzenesulfonate, coumarin, phosphotriester, bis-arylhydrazone, or bimane bi-thiopropionic acid derivative).
In some embodiments, the TG may comprise a reactive chemical moiety or functional group that can be cleaved by reducing agent conditions (e.g., hydroxylamine, disulfide, levulinate, nitro, or 4-nitrobenzyl derivative).
In some embodiments, the TG may comprise a reactive chemical moiety or a functional group that can be cleaved using acidic conditions (e.g., saccharides, tert-butylcarbamate analogue, dialkyl or diaryl dialkoxysilane, orthoester, acetal, aconityl, hydrazone, p-thiopropionate, phosphoramidate, imine, trityl, vinyl ether, polyketal, and alkyl 2-(diphenylphosphino)benzoate derivative; alkyl ester, 8-hydroxyquinoline ester, and picolinate ester).
In some embodiments, the TG may comprise a reactive chemical moiety or functional group that can be cleaved under oxidative conditions (e.g., a boronate, a vicinal diol, paramethoxybenzyl derivative, or a selenium compound).
In certain preferred embodiments, the TG comprises a saccharide, which can be cleaved under acidic or enzymatic conditions. In certain preferred embodiments, the triggering group is —NO2, which can be cleaved under reducing conditions. In certain preferred embodiments, the triggering group is a boronate, which can be cleaved under oxidative conditions. In certain preferred embodiments, the triggering group is an ester, which can be cleaved under acidic, basic, or enzymatic conditions. In certain preferred embodiments, the triggering group is a hydrazone, which can be cleaved under nucleophilic conditions or under acidic conditions. In certain preferred embodiments, the triggering group is a hydroxylamine, which can be cleaved under reducing conditions.
Saccharide Triggering Groups
In some embodiments, the compounds and conjugates disclosed herein comprise a saccharide triggering group, for instance a triggering group selected from:
wherein each R2 is independently hydrogen or is selected such that O—R21 is a hydroxy protecting group (e.g., acetyl); and R22 is hydrogen or lower alkyl (e.g., C1-C6-alkyl). In certain embodiments, the hydroxy protecting group is capable of being used in organic synthesis, including but not limited to: methyl ether, methoxymethyl ether, methylthiomethyl ether, 2-methoxyethoxymethyl ether, bis(2-chloroethoxy)methyl ether, tetrahydropyranyl ether, tetrahydrothiopyranyl ether, 4-methoxytetrahydropyranyl ether, 4-methoxytetrahydrothiopyranyl ether, tetrahydrofuranyl ether, 1-ethoxyethyl ether, 1-methyl-1-methoxyethyl ether, 2-(phenylselenyl)ethyl ether, t-butyl ether, allyl ether, benzyl ether, o-nitrobenzyl ether, triphenyl methyl ether, α-naphthyldiphenyl methyl ether, p-methoxyphenyldiphenylmethyl ether, 9-(9-phenyl-10-oxo)anthryl ether, trimethylsilyl ether, isopropyldimethylsilyl ether, t-butyldimethylsilyl ether, t-butyldiphenylsilyl ether, tribenzylsilyl ether, triisopropylsilyl ether, formate ester, acetate ester, trichloroacetate ester, phenoxyacetate ester, isobutyrate ester, pivaloate ester, adamantoate ester, benzoate ester, 2,4,6-trimethylbenzoate ester, methyl carbonate, 2,2,2-trichloroethyl carbonate, allyl carbonate, p-nitrophenyl carbonate, benzyl carbonate, p-nitrobenzyl carbonate, S-benzylthiocarbonate, N-phenylcarbamate, nitrate ester, 2,4-dinitrophenylsulfenate ester, etc., but is not limited thereto.
Protecting Groups as Triggering Groups
In some embodiments, TG is a group that is capable of being cleaved by a chemical reaction, a physicochemical reaction, and/or a biological reaction. In certain embodiments, TG is a protecting group. In some such embodiments, the protecting group is an amine group protecting group, an alcohol protecting group, or a thiol protecting group.
Amine Protecting Groups
In certain embodiments, the amine protecting group is a general protecting group that is capable of being used in organic synthesis, including but not limited to: m-nitrophenyl carbamate, 3,5-dimethoxybenzyl carbamate, o-nitrobenzyl carbamate, phenyl(o-nitrophenyl)methyl carbamate, alkyl carbamate, 9-fluorenylmethyl carbamate, 2,2,2-trichloroethyl carbamate, 2-trimethylsilylethyl carbamate (Teoc), t-butyl carbamate (Boc), vinyl carbamate (Voc), allyl carbamate (Alloc), 1-isopropylallyl carbamate (Ipaoc), 8-quinolyl carbamate, N-hydroxypiperidinyl carbamate, benzyl carbamate, p-methoxybenzyl carbamate, p-nitrobenzyl carbamate, diphenyl methyl carbamate, acetamide, chloroacetamide, trichloroacetamide, phenylacetamide, benzamide, N-phthalimide, N-2,3-diphenylmaleimide, N-2,5-dimethylpyrrole, N-1,1-dimethylthiomethyleneamine, N-benzylideneamine, benzenesulfenamide, o-nitrobenzenesulfenamide, triphenylmethylsulfenamide, p-toluenesulfonamide, methanesulfonamide, etc., but is not limited thereto.
Alcohol Protecting Groups
In certain embodiments, the alcohol protecting group is a general protecting group that is capable of being used in organic synthesis, including but not limited to: methyl ether, methoxymethyl ether (MOM ether), benzyloxymethyl ether (BOM ether), 2-(trimethylsilyl)ethoxymethyl ether (SEM ether), phenylthiomethyl ether (PTM ether), 2,2-dichloro-1,1-difluoroethyl ether, p-bromophenacyl ether, chloropropylmethyl ether, isopropyl ether, cyclohexyl ether, 4-methoxybenzyl, 2,6-dichlorobenzyl ether, 4-(dimethylaminocarbonyl)benzyl ether, 9-anthrylmethyl ether, 4-picolyl ether, methylthiomethyl ether (MTM ether), 2-methoxyethoxymethyl ether (MEM ether), bis(2-chloroethoxy)methyl ether, tetrahydropyranyl ether (THP ether), tetrahydrothiopyranyl ether, 4-methoxytetrahydropyranyl ether, 4-methoxytetrahydrothiopyranyl ether, tetrahydrofuranyl ether, 1-ethoxyethyl ether, 1-methyl-1-methoxyethyl ether, 2-(phenylselenyl)ethyl ether), t-butyl ether, allyl ether, benzyl ether, o-nitrobenzyl ether, triphenylmethyl ether, α-naphthyldiphenylmethyl ether, p-methoxyphenyldiphenylmethyl ether, 9-(9-phenyl-10-oxo)anthryl ether, trimethylsilyl ether (TMS ether), isopropyldimethylsilyl ether, t-butyldimethylsilyl ether (TBDMS ether), t-butyldiphenyl silyl ether, tribenzylsilyl ether, triisopropylsilyl ether, formate ester, acetate ester, trichloroacetate ester, phenoxyacetate ester, isobutyrate ester, pivaloate ester, adamantoate ester, benzoate ester, 2,4,6-trimethylbenzoate (Mesitoate) ester, methyl carbonate, 2,2,2-trichloroethyl carbonate, allyl carbonate, p-nitrophenyl carbonate, benzyl carbonate, p-nitrobenzyl carbonate, S-benzyl thiocarbonate, N-phenylcarbamate, nitrate ester, 2,4-dinitrophenylsulfenate ester, dimethylphosphinyl ester (DMP ester), dimethylthiophosphinyl ester (MPT ester), aryl methanesulfonate, aryl toluenesulfonate, etc., but is not limited thereto.
Thiol Protecting Groups
In certain embodiments, the thiol protecting group is capable of being used in organic synthesis, including but not limited to: S-benzyl thioether, S-p-methoxybenzyl thioether, S-o- or p-hydroxyl or acetoxybenzyl thioether, S-p-nitrobenzyl thioether, S-4-picolyl thioether, S-2-picolyl N-oxide thioether, S-9-anthrylmethyl thioether, S-9-fluorenylmethyl thioether, S-methoxymethyl monothioacetal, A-acetyl derivative, S-benzoyl derivative, S—(N-ethylcarbamate), S—(N-methoxymethylcarbamate), etc., but is not limited thereto.
Linking Group
In some embodiments, the compounds and conjugates disclosed herein comprise a linking group connecting each CB and Ar through a covalent bond. Typical linking groups are stable, non-hydrolyzable moieties, such as, for example a C10-C100 linear or branched, saturated or unsaturated alkylene. In certain embodiments, the linking unit satisfies at least two, and more preferably at least three, out of four of the following criteria:
(i) at least one —CH2— in the alkylene moiety is substituted with (i.e., is replaced by) one or more heteroatoms selected from —NH—, —C(═O), —O—, —S— and —P—;
(ii) at least one heteroarylene is included in the alkylene moiety;
(iii) at least one amino acid moiety, sugar bond, peptide bond, or amide bond is included in the alkylene moiety; and
(iv) the alkylene may be further substituted with one or more substituents selected from the group consisting of C1-C20 alkyl, C6-C20 aryl C1-C8 alkyl, —(CH2)sCOOH, and —(CH2)pNH2, wherein s is an integer having a value of 0 to 10, and p is an integer having a value of 1 to about 10.
In certain embodiments, the linking unit comprises at least two, and more preferably at least three, of the following:
(i) at least one heteroatom selected from —NH—, —C(═O), —O—, —S— and —P—;
(ii) at least one heteroarylene;
(iii) at least one amino acid moiety, sugar bond, peptide bond, or amide bond; and
(iv) the alkylene may be further substituted with one or more substituents selected from the group consisting of C1-C20 alkyl, C6-C20 aryl C1-C8 alkyl, —(CH2)sCOOH, and —(CH2)pNH2, wherein s is an integer having a value of 0 to 10, and p is an integer having a value of 1 to about 10.
In other embodiments, the linking group connecting each CB and Ar comprises a functional group produced through a click chemical reaction.
In alternative embodiments, the linking unit comprises a reactive functional group capable of participating in a click chemical reaction.
A click chemical reaction is a reaction that can be performed under mild conditions, and is extremely selective for functional groups that are not commonly found in biological molecules (e.g., an azide group, an acetylene group, etc.). Accordingly, this reaction can be carried out in the presence of complex triggering groups, targeting moieties, etc. Further, click chemistry has high reaction specificity. For example, the click chemical reaction between an azide group and an acetylene group proceeds selectively without interference from other functional groups present in the molecule. For example, azide-acetylene click chemistry may afford a triazole moiety in high yield.
Thus, in some embodiments, the linking group connecting each CB and Ar comprises
V may be a single bond, —O—, —S—, —NR21—, —C(O)NR22—, —NR23C(O)—, —NR24SO2—, or —SO2NR2′—, R21 to R2S may be each independently hydrogen, (C1-C6)alkyl, (C1-C6)alkyl(C6-C20)aryl, or (C1-C6)alkyl(C3-C20)heteroaryl, r may be an integer having a value of 1 to about 10, p may be an integer having a value of 0 to about 10, q may be an integer having a value of 1 to about 10, and L″ may be a single bond.
In other embodiments, the linking unit connecting each CB and Ar is a linking group represented by Formula (A):
**-Lc-Wb1—(CH2)b—Wa3—(P1)a—Y2—Wa2—Y1—Wa1—* (A)
wherein:
In some embodiments, P1 comprises at least one unit represented by Formula (B) or (C):
wherein:
In some embodiments of formula (B) or (C):
In some such embodiments of formula (B) or (C):
phosphonic acid (—P(═O)(OH)2), ketone, C8-C10 cycloalkynyl, —OH, —NHOH, —NHNH2, —SH, carboxylic acid (—COOH), acetylene (—C≡CH), azide (—N3), amino (—NH2), sulfonic acid (—SO3H), an alkynone derivative (—C(O)C≡C—Ra, wherein Ra is C1-C10-alkyl), and dihydrogen phosphate (—OP(═O)(OH)2).
In other such embodiments of formula (B) or (C):
phosphonic acid (—P(═O)(OH)2), ketone, C8-C10 cycloalkynyl, —OH, —NHOH, —NHNH2, —SH, carboxylic acid (—COOH), acetylene (—C≡CH), azide (—N3), amino (—NH2), sulfonic acid (—SO3H), an alkynone derivative (—C(O)C≡C—Ra, wherein Ra is C1-C10-alkyl), and dihydrogen phosphate (—OP(═O)(OH)2).
In some embodiments, Y2 is a single bond or is selected from:
wherein:
In certain embodiments, the linking unit connecting each CB and Ar is a linking group comprising (CH2)b, Lc, (P1)a, Wa1, Wa2, Wa3, Y1, and Y2 groups connected to each other by covalent bonds, wherein:
In some embodiments, R12 is a natural amino acid side chain. In other embodiments, R12 is non-natural amino acid side chain.
In some embodiments, the linking unit connecting each CB and Ar is a linking group represented by Formula (A):
**-Lc-Wb1—(CH2)b—Wa3—(P1)a—Y2—Wa2—Y1—Wa1—* (A)
wherein:
* is the point of attachment to CB; and
** is point of attachment to Ar.
In some such embodiments, P1 is
wherein:
In some embodiments P1 is
wherein:
In some such embodiments of P1:
phosphonic acid (—P(═O)(OH)2), ketone, C8-C10 cycloalkynyl, —OH, —NHOH, —NHNH2, —SH, carboxylic acid (—COOH), acetylene (—C≡CH), azide (—N3), amino (—NH2), sulfonic acid (—SO3H), an alkynone derivative (—C(O)C≡C—Ra, wherein Ra is C1-C10-alkyl), and dihydrogen phosphate (—OP(═O)(OH)2).
In other such embodiments of P1:
phosphonic acid (—P(═O)(OH)2), ketone, C8-C10cycloalkynyl, —OH, —NHOH, —NHNH2, —SH, carboxylic acid (—COOH), acetylene (—C≡CH), azide (—N3), amino (—NH2), sulfonic acid (—SO3H), an alkynone derivative (—C(O)C≡C—Ra, wherein Ra is C1-C10-alkyl), and dihydrogen phosphate (—OP(═O)(OH)2).
In alternative embodiments, the linking unit connecting CB and Ar is a linking group represented by Formula (F), (G), (H), (J), (K), (L), (M), or (N):
wherein:
In some embodiments of Formula (F), (G), (H), (I), (J), (K), (L), or (M):
In some such embodiments of Formula (F), (G), (H), (I), (J), (K), (L), or (M):
phosphonic acid (—P(═O)(OH)2), ketone, C8-C10cycloalkynyl, —OH, —NHOH, —NHNH2, —SH, carboxylic acid (—COOH), acetylene (—C≡CH), azide (—N3), amino (—NH2), sulfonic acid (—SO3H), an alkynone derivative (—C(O)C≡C—Ra, wherein Ra is C1-C10-alkyl), and dihydrogen phosphate (—OP(═O)(OH)2).
In some such embodiments of Formula (F), (G), (H), (I), (J), (K), (L), or (M):
phosphonic acid (—P(═O)(OH)2), ketone, C8-C10cycloalkynyl, —OH, —NHOH, —NHNH2, —SH, carboxylic acid (—COOH), acetylene (—C≡CH), azide (—N3), amino (—NH2), sulfonic acid (—SO3H), an alkynone derivative (—C(O)C≡C—Ra, wherein Ra is C1-C10-alkyl), and dihydrogen phosphate (—OP(═O)(OH)2).
Targeting Moieties
The compounds and conjugates of the present invention can further comprise a ligand or targeting moiety, CB. In some embodiments, the ligand or targeting moiety is any molecular recognition element, which can undergo a specific interaction with at least one other molecular through, e.g., noncovalent bonding such as hydrogen bonding, metal coordination, hydrophobic forces, van der Waals forces, x-n interactions, halogen bonding, electrostatic, and/or electromagnetic effects. In certain embodiments, CB is selected from a nanoparticle, an immunoglobulin, a nucleic acid, a protein, an oligopeptide, a polypeptide, an antibody, a fragment of an antigenic polypeptide, a repebody, and the like.
The compounds and conjugates of the present invention may comprise one or more targeting moieties. That is, the variable cb may have an integer value selected from 1, 2, 3, 4, 5, 1-10, or 1-20.
In some embodiments, CB comprises two or more independently selected natural amino acids or non-natural amino acids conjugated by covalent bonds (e.g., peptide bonds), and the peptide may include 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, or more natural amino acids or non-natural amino acids that are conjugated by peptide bonds. In some embodiments, the ligand comprises shorter amino acid sequences (e.g., fragments of natural proteins or synthetic polypeptide fragments) as well as full-length proteins (e.g., pre-engineered proteins).
In some embodiments, CB is selected from an antibody, a hormone, a drug, an antibody analogue (e.g., non-IgG), protein, an oligopeptide, a polypeptide, etc., which bind to a receptor. In certain embodiments, CB selectively targets the drug in a specific organ, tissue, or cell. In other embodiments, CB specifically binds to a receptor over-expressed in cancer cells as compared to normal cells, and may be classified into a monoclonal antibody (mAb) or an antibody fragment and a low-molecular non-antibody. Preferably, CB is selected from peptides, tumor cell-specific peptides, tumor cell-specific aptamers, tumor cell-specific carbohydrates, tumor cell-specific monoclonal antibodies, polyclonal antibodies, and antibody fragments that are identified in a library screen.
Exemplary ligands or targeting moieties include, but are not limited to, carnitine, inositol, lipoic acid, pyridoxal, ascorbic acid, niacin, pantothenic acid, folic acid, riboflavin, thiamine, biotin, vitamin B12, other water-soluble vitamins (vitamin B), fat-soluble vitamins (vitamin A, D, E, K), RGD (Arg-Gly-Asp), NGR (Asn-Gly-Arg), transferein, VIP (vasoactive intestinal peptide) receptor, APRPG (Ala-Pro-Arg-Pro-Gly) peptide, TRX-20 (thioredoxin-20), integrin, nucleolin, aminopeptidase N (CD13), endoglin, vascular epithelial growth factor receptor, low density lipoprotein receptor, transferrin receptor, somatostatin receptor, bombesin, neuropeptide Y, luteinizing hormone releasing hormone receptor, folic acid receptor, epidermal growth factor receptor, transforming growth factor, fibroblast growth factor receptor, asialoglycoprotein receptor, galectin-3 receptor, E-selectin receptor, hyaluronic acid receptor, prostate-specific membrane antigen (PSMA), cholecystokinin A receptor, cholecystokinin B receptor, discoidin domain receptor, mucin receptor, opioid receptor, plasminogen receptor, bradykinin receptor, insulin receptor, insulin-like growth factor receptor, angiotensin AT1 receptor, angiotensin AT2 receptor, granulocyte macrophage colony stimulating factor receptor (GM-CSF receptor), galactosamine receptor, sigma-2 receptor, delta-like 3 (DLL-3), aminopeptidase P, melanotransferrin, leptin, tetanus toxin Tet1, tetanus toxin G23, RVG (Rabies Virus Glycoprotein) peptide, HER2 (human epidermal growth factor receptor 2), GPNMB (glycoprotein non-metastatic b), Ley, CA6, CanAng, SLC44A4 (Solute carrier family 44 member 4), CEACAM5 (Carcinoembryonic antigen-related cell adhesion molecule 5), Nectin-4, Carbonic Anhydrase 9, TNNB2, 5T4, CD30, CD37, CD74, CD70, PMEL17, EphA2 (EphrinA2 receptor), Trop-2, SC-16, Tissue factor, ENPP-3 (AGS-16), SLITRK6 (SLIT and NTRK like family member 6), CD27, Lewis Y antigen, LIV1, GPR161 (G Protein-Coupled Receptor 161), PBR (peripheral-type benzodiazeoine receptor), MERTK (Mer receptor tyrosine kinase) receptor, CD71, LLT1 (Lectin-like transcript 1 or CLED2D), interleukin-22 receptor, sigma 1 receptor, peroxisome proliferator-activated receptor, DLL3, C4.4a, cKIT, EphrinA, CTLA4 (Cytotoxic T-Lymphocyte Associated Protein 4), FGFR2b (fibroblast growth factor receptor 2b), N-acetylcholine receptor, gonadotropin releasing hormone receptor, gastrin-releasing peptide receptor, bone morphogenetic protein receptor-type 1B (BMPR1B), E16 (LAT1, SLC7A5), STEAP1 (six transmembrane epithelial antigen of prostate), 0772P (CA125, MUC16), MPF (MSLN, mesothelin), Napi3b (SLC34A2), Sema5b (semaphorin 5b), ETBR (Endothelin type B receptor), MSG783 (RNF124), STEAP2 (six transmembrane epithelial antigen of prostate 2), TrpM4 (transient receptor potential cation 5 channel, subfamily M, member 4), CRIPTO (teratocarcinoma-derived growth factor), CD21, CD79b, FcRH2 (IFGP4), HER2 (ErbB2), NCA (CEACM6), MDP (DPEP1), IL20R-alpha (IN20Ra), Brevican (BCAN), EphB2R, ASLG659 (B7h), CD276, PSCA (prostate stem cell antigen precursor), GEDA, BAFF-R (BR3), CD22 (BL-CAM), CD79a, CXCR5, HLA-DOB, P2X5, CD72, LY64, FcRH1, IRTA2, TENB2, SSTR2, SSTR5, SSTR1, SSTR3, SSTR4, ITGAV (Integrin, alpha 5), ITGB6 (Integrin, beta 6), MET, MUC1, EGFRvIII, CD33, CD19, IL2RA (interleukin 2 receptor, alpha), AXL, BCMA, CTA (cancer tetis antigens), CD174, CLEC14A, GPR78, CD25, CD32, LGR5 (GPR49), CD133 (Prominin), ASG5, ENPP3 (ectonucleotide Pyrophosphatase/Phosphodiesterase 3), PRR4 (proline-rich protein 4), GCC (guanylate cyclase 2C), Liv-1 (SLC39A6), CD56, CanAg, TIM-1, RG-1, B7-H4, PTK7, CD138, Claudins, Her3 (ErbB3), RON (MST1R), CD20, TNC (Tenascin C), FAP, DKK-1, CD52, CS1 (SLAMF7), Annexin A1, V-CAM, gp100, MART-1, MAGE-1 (melanoma antigen-encoding gene-1), MAGE-3 (melanoma-associated antigen 3), BAGE, GAGE-1, MUM-1 (multiple myeloma oncogene 1), CDK4, TRP-1 (gp75), TAG-72 (tumor-associated glycoprotein-72), ganglioside GD2, GD3, GM2, GM3, VEPS, VEP9, Myl, VIM-D5, D156-22, OX40, RNAK, PD-L1, TNFR1, TNFR2, etc.
Targets
In some embodiments, the target or targets of the molecular recognition element are specifically associated with one or more particular cell or tissue types. In some embodiments, targets are specifically associated with one or more particular disease states. In some embodiments, targets are specifically associated with one or more particular developmental stages. For example, a cell type specific marker is typically expressed at levels at least 2 fold greater in that cell type than in a reference population of cells. In some embodiments, the cell type specific marker is present at levels at least 3 fold, at least 4 fold, at least 5 fold, at least 6 fold, at least 7 fold, at least 8 fold, at least 9 fold, at least 10 fold, at least 50 fold, at least 100 fold, or at least 1,000 fold greater than its average expression in a reference population. Detection or measurement of a cell type specific marker may make it possible to distinguish the cell type or types of interest from cells of many, most, or all other types. In some embodiments, a target can comprise a protein, a carbohydrate, a lipid, and/or a nucleic acid, as described herein.
In some embodiments, a substance is considered to be “targeted” if it specifically binds to a targeting moiety, such as a nucleic acid targeting moiety. In some embodiments, a targeting moiety, such as a nucleic acid targeting moiety, specifically binds to a target under stringent conditions.
In certain embodiments, the conjugates and compounds described herein comprise a targeting moiety that specifically binds to one or more targets (e.g., antigens) associated with an organ, tissue, cell, extracellular matrix component, and/or intracellular compartment. In some embodiments, the conjugates and compounds described herein comprise a targeting moiety that specifically binds to targets associated with a particular organ or organ system. In some embodiments, the conjugates and compounds described herein comprise a targeting moiety that specifically binds to one or more intracellular targets (e.g., organelle, intracellular protein). In some embodiments, the conjugates and compounds described herein comprise a targeting moiety which specifically binds to targets associated with diseased organs, tissues, cells, extracellular matrix components, and/or intracellular compartments. In some embodiments, the conjugates and compounds described herein comprise a targeting moiety that specifically binds to targets associated with particular cell types (e.g., endothelial cells, cancer cells, malignant cells, prostate cancer cells, etc.).
In some embodiments, the conjugates and compounds described herein comprise a targeting moiety that binds to a target that is specific for one or more particular tissue types (e.g., liver tissue vs. prostate tissue). In some embodiments, the conjugates and compounds described herein comprise a targeting moiety that binds to a target that is specific for one or more particular cell types (e.g., T cells vs. B cells). In some embodiments, the conjugates and compounds described herein comprise a targeting moiety that binds to a target that is specific for one or more particular disease states (e.g., tumor cells vs. healthy cells). In some embodiments, the conjugates and compounds described herein comprise a targeting moiety that binds to a target that is specific for one or more particular developmental stages (e.g., stem cells vs. differentiated cells).
In some embodiments, a target may be a marker that is exclusively or primarily associated with one or a few cell types, with one or a few diseases, and/or with one or a few developmental stages. A cell type specific marker is typically expressed at levels at least 2 fold greater in that cell type than in a reference population of cells which may consist, for example, of a mixture containing cells from a plurality (e.g., 5-10 or more) of different tissues or organs in approximately equal amounts. In some embodiments, the cell type specific marker is present at levels at least 3 fold, at least 4 fold, at least 5 fold, at least 6 fold, at least 7 fold, at least 8 fold, at least 9 fold, at least 10 fold, at least 50 fold, at least 100 fold, or at least 1000 fold greater than its average expression in a reference population. Detection or measurement of a cell type specific marker may make it possible to distinguish the cell type or types of interest from cells of many, most, or all other types.
In some embodiments, a target comprises a protein, a carbohydrate, a lipid, and/or a nucleic acid. In some embodiments, a target comprises a protein and/or characteristic portion thereof, such as a tumor marker, integrin, cell surface receptor, transmembrane protein, intercellular protein, ion channel, membrane transporter protein, enzyme, antibody, chimeric protein, glycoprotein, etc. In some embodiments, a target comprises a carbohydrate and/or characteristic portion thereof, such as a glycoprotein, sugar (e.g., monosaccharide, disaccharide, polysaccharide), glycocalyx (i.e., the carbohydrate-rich peripheral zone on the outside surface of most eukaryotic cells), etc. In some embodiments, a target comprises a lipid and/or characteristic portion thereof, such as an oil, fatty acid, glyceride, hormone, steroid (e.g., cholesterol, bile acid), vitamin (e.g., vitamin E), phospholipid, sphingolipid, lipoprotein, etc. In some embodiments, a target comprises a nucleic acid and/or characteristic portion thereof, such as a DNA nucleic acid; RNA nucleic acid; modified DNA nucleic acid; modified RNA nucleic acid; nucleic acid that includes any combination of DNA, RNA, modified DNA, and modified RNA.
Numerous markers are known in the art. Typical markers include cell surface proteins, e.g., receptors. Exemplary receptors include, but are not limited to, the transferrin receptor; LDL receptor; growth factor receptors such as epidermal growth factor receptor family members (e.g., EGFR, Her2, Her3, Her4) or vascular endothelial growth factor receptors, cytokine receptors, cell adhesion molecules, integrins, selectins, and CD molecules. The marker can be a molecule that is present exclusively or in higher amounts on a malignant cell, e.g., a tumor antigen.
Nanoparticles
In some embodiments, the targeting moiety comprises a particle (e.g., target particle), preferably a nanoparticle, optionally a targeted nanoparticle attached to a targeting molecule that can binds specifically or preferably to a target. In some embodiments, the targeting particle by itself guides the compound of the present invention (such as by enrichment in tumor cells or tissue) and there is no additional targeting molecules attached therein.
By “nanoparticle” herein is meant any particle having a diameter of less than 1000 nm. In some embodiments, a therapeutic agent and/or targeting molecule can be associated with the body of the particle, for instance in a polymeric matrix. In some embodiments, the targeting molecule can be covalently associated with the surface of the polymeric matrix. In some embodiments, the covalent association is mediated by a linker. In some embodiments, the therapeutic agent can be associated with the surface of, encapsulated within, surrounded by, and/or dispersed throughout the polymeric matrix. See, for example, U.S. Pat. No. 8,246,968, which is incorporated herein in its entirely.
In general, nanoparticles of the present invention comprise any type of particle. Any particle can be used in accordance with the present invention. In some embodiments, particles are biodegradable and biocompatible. In general, a biocompatible substance is not toxic to cells. In some embodiments, a substance is considered to be biocompatible if its addition to cells results in less than a certain threshold of cell death. In some embodiments, a substance is considered to be biocompatible if its addition to cells does not induce adverse effects. In general, a biodegradable substance is one that undergoes breakdown under physiological conditions over the course of a therapeutically relevant time period (e.g., weeks, months, or years). In some embodiments, a biodegradable substance is a substance that can be broken down by cellular machinery. In some embodiments, a biodegradable substance is a substance that can be broken down by chemical processes. In some embodiments, a particle is a substance that is both biocompatible and biodegradable. In some embodiments, a particle is a substance that is biocompatible, but not biodegradable. In some embodiments, a particle is a substance that is biodegradable, but not biocompatible.
It is often desirable to use a population of particles that is relatively uniform in terms of size, shape, and/or composition so that each particle has similar properties. For example, at least 80%, at least 90%, or at least 95% of the particles may have a diameter or greatest dimension that falls within 5%, 10%, or 20% of the average diameter or greatest dimension. In some embodiments, a population of particles may be heterogeneous with respect to size, shape, and/or composition. A variety of different particles can be used in accordance with the present invention. In some embodiments, particles are spheres or spheroids. In some embodiments, particles are spheres or spheroids. In some embodiments, particles are flat or plate-shaped. In some embodiments, particles are cubes or cuboids. In some embodiments, particles are ovals or ellipses. In some embodiments, particles are cylinders, cones, or pyramids.
In some embodiments, particles are microparticles (e.g., microspheres). In general, a “microparticle” refers to any particle having a diameter of less than 1000 μm. In some embodiments, particles are picoparticles (e.g., picospheres). In general, a “picoparticle” refers to any particle having a diameter of less than 1 nm. In some embodiments, particles are liposomes. In some embodiments, particles are micelles.
Particles can be solid or hollow and can comprise one or more layers (e.g., nanoshells, nanorings). In some embodiments, each layer has a unique composition and unique properties relative to the other layer(s). For example, particles may have a core/shell structure, wherein the core is one layer and the shell is a second layer. Particles may comprise a plurality of different layers. In some embodiments, one layer may be substantially crosslinked, a second layer is not substantially cross-linked, and so forth. In some embodiments, one, a few, or all of the different layers may comprise one or more therapeutic or diagnostic agents to be delivered. In some embodiments, one layer comprises an agent to be delivered, a second layer does not comprise an agent to be delivered, and so forth. In some embodiments, each individual layer comprises a different agent or set of agents to be delivered.
In some embodiments, a particle is porous, by which is meant that the particle contains holes or channels, which are typically small compared with the size of a particle. For example a particle may be a porous silica particle, e.g., a mesoporous silica nanoparticle or may have a coating of mesoporous silica (Lin et al., 2005, J. Am. Chem. Soc, 17:4570). Particles may have pores ranging from about 1 nm to about 50 nm in diameter, e.g., between about 1 and 20 nm in diameter. Between about 10% and 95% of the volume of a particle may consist of voids within the pores or channels.
Particles may have a coating layer. Use of a biocompatible coating layer can be advantageous, e.g., if the particles contain materials that are toxic to cells. Suitable coating materials include, but are not limited to, natural proteins such as bovine serum albumin (BSA), biocompatible hydrophilic polymers such as polyethylene glycol (PEG) or a PEG derivative, phospholipid-(PEG), silica, lipids, polymers, carbohydrates such as dextran, other nanoparticles that can be associated with inventive nanoparticles, etc. Coatings may be applied or assembled in a variety of ways such as by dipping, using a layer-by-layer technique, by self-assembly, conjugation, etc. Self-assembly refers to a process of spontaneous assembly of a higher order structure that relies on the natural attraction of the components of the higher order structure (e.g., molecules) for each other. It typically occurs through random movements of the molecules and formation of bonds based on size, shape, composition, or chemical properties.
Examples of polymers include polyalkylenes (e.g., polyethylenes), polycarbonates (e.g., poly(1,3-dioxan-2-one)), polyanhydrides (e.g., poly(sebacic anhydride)), polyhydroxyacids (e.g., poly(3-hydroxyalkanoate)), polyfumarates, polycaprolactones, polyamides (e.g., polycaprolactam), polyacetals, polyethers, polyesters (e.g., polylactide, polyglycolide), poly(orthoesters), polyvinyl alcohols, polyurethanes, polyphosphazenes, polyacrylates, polymethacrylates, polycyanoacrylates, polyureas, polystyrenes, and polyamines. In some embodiments, polymers in accordance with the present invention include polymers which have been approved for use in humans by the U.S. Food and Drug Administration (FDA) under 21 C.F.R § 177.2600, including but not limited to polyesters (e.g., polylactic acid, polyglycolic acid, poly(lactic-co-glycolic acid), polycaprolactone, polyvalerolactone, poly(1,3-dioxan-2-one)); polyanhydrides (e.g., poly(sebacic anhydride)); polyethers (e.g., polyethylene glycol); polyurethanes; polymethacrylates; polyacrylates; and polycyanoacrylates.
In some embodiments, particles can be non-polymeric particles (e.g., metal particles, quantum dots, ceramic particles, polymers comprising inorganic materials, bone-derived materials, bone substitutes, viral particles, etc.). In some embodiments, a therapeutic or diagnostic agent to be delivered can be associated with the surface of such a non-polymeric particle. In some embodiments, a non-polymeric particle is an aggregate of non-polymeric components, such as an aggregate of metal atoms (e.g., gold atoms). In some embodiments, a therapeutic or diagnostic agent to be delivered can be associated with the surface of and/or encapsulated within, surrounded by, and/or dispersed throughout an aggregate of non-polymeric components.
Particles (e.g., nanoparticles, microparticles) may be prepared using any method known in the art. For example, particulate formulations can be formed by methods as nanoprecipitation, flow focusing fluidic channels, spray drying, single and double emulsion solvent evaporation, solvent extraction, phase separation, milling, microemulsion procedures, microfabrication, nanofabrication, sacrificial layers, simple and complex coacervation, and other suitable methods. Alternatively or additionally, aqueous and organic solvent syntheses for monodisperse semiconductor, conductive, magnetic, organic, and other nanoparticles have been described (Pellegrino et al., 2005, Small, 1:48; Murray et al., 2000, Ann. Rev. Mat. Sci., 30:545; and Trindade et al., 2001, Chem. Mat., 13:3843).
Methods for making microparticles for delivery of encapsulated agents are described in the literature (see, e.g., Doubrow, Ed., “Microcapsules and Nanoparticles in Medicine and Pharmacy,” CRC Press, Boca Raton, 1992; Mathiowitz et al., 1987, J. Control. Release, 5:13; Mathiowitz et al., 1987, Reactive Polymers, δ: 275; and Mathiowitz et al., 1988, J. Appl. Polymer Sci., 35:755).
Nucleic Acid Targeting Moieties
In some embodiments, the targeting moiety comprises an nucleic acid targeting moiety.
In general, a nucleic acid targeting moiety is any polynucleotide that binds to a component associated with an organ, tissue, cell, extracellular matrix component, and/or intracellular compartment (the target).
In some embodiments, nucleic acid targeting moieties are aptamers. An aptamer is typically a polynucleotide that binds to a specific target structure that is associated with a particular organ, tissue, cell, extracellular matrix component, and/or intracellular compartment. In general, the targeting function of the aptamer is based on the three-dimensional structure of the aptamer. In some embodiments, binding of an aptamer to a target is typically mediated by the interaction between the two- and/or three-dimensional structures of both the aptamer and the target. In some embodiments, binding of an aptamer to a target is not solely based on the primary sequence of the aptamer, but depends on the three-dimensional structure(s) of the aptamer and/or target. In some embodiments, aptamers bind to their targets via complementary Watson-Crick base pairing which is interrupted by structures (e.g., hairpin loops) that disrupt base pairing.
In some embodiments, nucleic acid targeting moieties are spiegelmers (PCT Publications WO 98/08856, WO 02/100442, and WO 06/117217). In general, spiegelmers are synthetic, mirror-image nucleic acids that can specifically bind to a target (i.e., mirror image aptamers). Spiegelmers are characterized by structural features that make them not susceptible to exo- and endo-nucleases.
One of ordinary skill in the art will recognize that any nucleic acid targeting moiety (e.g., aptamer or spiegelmer) that is capable of specifically binding to a target can be used in accordance with the present invention. In some embodiments, nucleic acid targeting moieties to be used in accordance with the present invention may target a marker associated with a disease, disorder, and/or condition. In some embodiments, nucleic acid targeting moieties to be used in accordance with the present invention may target cancer-associated targets. In some embodiments, nucleic acid targeting moieties to be used in accordance with the present invention may target tumor markers. Any type of cancer and/or any tumor marker may be targeted using nucleic acid targeting moieties in accordance with the present invention. To give but a few examples, nucleic acid targeting moieties may target markers associated with prostate cancer, lung cancer, breast cancer, colorectal cancer, bladder cancer, pancreatic cancer, endometrial cancer, ovarian cancer, bone cancer, esophageal cancer, liver cancer, stomach cancer, brain tumors, cutaneous melanoma, and/or leukemia.
Nucleic acids of the present invention (including nucleic acid nucleic acid targeting moieties and/or functional RNAs to be delivered, e.g., RNAi-inducing entities, ribozymes, tRNAs, etc., described in further detail below) may be prepared according to any available technique including, but not limited to chemical synthesis, enzymatic synthesis, enzymatic or chemical cleavage of a longer precursor, etc.
Methods of synthesizing RNAs are known in the art (see, e.g., Gait, M. J. (ed.) Oligonucleotide synthesis: a practical approach, Oxford [Oxfordshire], Washington, D.C.: IRL Press, 1984; and Herdewijn, P. (ed.) Oligonucleotide synthesis: methods and applications, Methods in molecular biology, v. 288 (Clifton, N.J.) Totowa, N.J.: Humana Press, 2005).
The nucleic acid that forms the nucleic acid nucleic acid targeting moiety may comprise naturally occurring nucleosides, modified nucleosides, naturally occurring nucleosides with hydrocarbon linkers (e.g., an alkylene) or a polyether linker (e.g., a PEG linker) inserted between one or more nucleosides, modified nucleosides with hydrocarbon or PEG linkers inserted between one or more nucleosides, or a combination of thereof. In some embodiments, nucleotides or modified nucleotides of the nucleic acid nucleic acid targeting moiety can be replaced with a hydrocarbon linker or a polyether linker provided that the binding affinity and selectivity of the nucleic acid nucleic acid targeting moiety is not substantially reduced by the substitution (e.g., the dissociation constant of the nucleic acid nucleic acid targeting moiety for the target should not be greater than about 1×10−3 M).
It will be appreciated by those of ordinary skill in the art that nucleic acids in accordance with the present invention may comprise nucleotides entirely of the types found in naturally occurring nucleic acids, or may instead include one or more nucleotide analogs or have a structure that otherwise differs from that of a naturally occurring nucleic acid. U.S. Pat. Nos. 6,403,779; 6,399,754; 6,225,460; 6,127,533; 6,031,086; 6,005,087; 5,977,089; and references therein disclose a wide variety of specific nucleotide analogs and modifications that may be used. See Crooke, S. (ed.) Antisense Drug Technology: Principles, Strategies, and Applications (1 st ed), Marcel Dekker; ISBN: 0824705661; 1st edition (2001) and references therein. For example, 2′-modifications include halo, alkoxy and allyloxy groups. In some embodiments, the 2′-OH group is replaced by a group selected from H, OR, R, halo, SH, SR, NH2, NHR, NR2 or CN, wherein R is C1-C6 alkyl, alkenyl, or alkynyl, and halo is F, Cl, Br, or I. Examples of modified linkages include phosphorothioate and 5′-N-phosphoramidite linkages.
Nucleic acids comprising a variety of different nucleotide analogs, modified backbones, or non-naturally occurring internucleoside linkages can be utilized in accordance with the present invention. Nucleic acids of the present invention may include natural nucleosides (i.e., adenosine, thymidine, guanosine, cytidine, uridine, deoxyadenosine, deoxythymidine, deoxyguanosine, and deoxycytidine) or modified nucleosides. Examples of modified nucleotides include base modified nucleoside (e.g., aracytidine, inosine, isoguanosine, nebularine, pseudouridine, 2,6-diaminopurine, 2-aminopurine, 2-thiothymidine, 3-deaza-5-azacytidine, 2′-deoxyuridine, 3-nitorpyrrole, 4-methylindole, 4-thiouridine, 4-thiothymidine, 2-aminoadenosine, 2-thiothymidine, 2-thiouridine, 5-bromocytidine, 5-iodouridine, inosine, 6-azauridine, 6-chloropurine, 7-deazaadenosine, 7-deazaguanosine, 8-azaadenosine, 8-azidoadenosine, benzimidazole, Ml-methyladenosine, pyrrolo-pyrimidine, 2-amino-6-chloropurine, 3-methyl adenosine, 5-propynylcytidine, 5-propynyluridine, 5-bromouridine, 5-fluorouridine, 5-methylcytidine, 7-deazaadenosine, 7-deazaguanosine, 8-oxoadenosine, 8-oxoguanosine, 0(6)-methylguanine, and 2-thiocytidine), chemically or biologically modified bases (e.g., methylated bases), modified sugars (e.g., 2′-fluororibose, 2′-aminoribose, 2′-azidoribose, 2′-O-methylribose, L-enantiomeric nucleosides arabinose, and hexose), modified phosphate groups (e.g., phosphorothioates and 5′-N-phosphoramidite linkages), and combinations thereof. Natural and modified nucleotide monomers for the chemical synthesis of nucleic acids are readily available. In some cases, nucleic acids comprising such modifications display improved properties relative to nucleic acids consisting only of naturally occurring nucleotides. In some embodiments, nucleic acid modifications described herein are utilized to reduce and/or prevent digestion by nucleases (e.g., exonucleases, endonucleases, etc.). For example, the structure of a nucleic acid may be stabilized by including nucleotide analogs at the 3′ end of one or both strands order to reduce digestion.
Modified nucleic acids need not be uniformly modified along the entire length of the molecule. Different nucleotide modifications and/or backbone structures may exist at various positions in the nucleic acid. One of ordinary skill in the art will appreciate that the nucleotide analogs or other modification(s) may be located at any position(s) of a nucleic acid such that the function of the nucleic acid is not substantially affected. To give but one example, modifications may be located at any position of a nucleic acid targeting moiety such that the ability of the nucleic acid targeting moiety to specifically bind to the target is not substantially affected. The modified region may be at the 5′-end and/or the 3′-end of one or both strands. For example, modified nucleic acid targeting moieties in which approximately 1-5 residues at the 5′ and/or 3′ end of either of both strands are nucleotide analogs and/or have a backbone modification have been employed. The modification may be a 5′ or 3′ terminal modification. One or both nucleic acid strands may comprise at least 50% unmodified nucleotides, at least 80% unmodified nucleotides, at least 90% unmodified nucleotides, or 100% unmodified nucleotides.
Nucleic acids in accordance with the present invention may, for example, comprise a modification to a sugar, nucleoside, or internucleoside linkage such as those described in U.S. Patent Application Publications 2003/0175950, 2004/0192626, 2004/0092470, 2005/0020525, and 2005/0032733. The present invention encompasses the use of any nucleic acid having any one or more of the modification described therein. For example, a number of terminal conjugates, e.g., lipids such as cholesterol, lithocholic acid, aluric acid, or long alkyl branched chains have been reported to improve cellular uptake. Analogs and modifications may be tested using, e.g., using any appropriate assay known in the art, for example, to select those that result in improved delivery of a therapeutic or diagnostic agent, improved specific binding of an nucleic acid targeting moiety to a target, etc. In some embodiments, nucleic acids in accordance with the present invention may comprise one or more non-natural nucleoside linkages. In some embodiments, one or more internal nucleotides at the 3′-end, 5′-end, or both 3′- and 5′- ends of the nucleic acid targeting moiety are inverted to yield a linkage such as a 3′-3′ linkage or a 5′-5′ linkage.
In some embodiments, nucleic acids in accordance with the present invention are not synthetic, but are naturally-occurring entities that have been isolated from their natural environments.
Any method can be used to design novel nucleic acid targeting moieties (see, e.g., U.S. Pat. Nos. 6,716,583; 6,465,189; 6,482,594; 6,458,543; 6,458,539; 6,376,190; 6,344,318; 6,242,246; 6,184,364; 6,001,577; 5,958,691; 5,874,218; 5,853,984; 5,843,732; 5,843,653; 5,817,785; 5,789,163; 5,763,177; 5,696,249; 5,660,985; 5,595,877; 5,567,588; and 5,270,163; and U.S. Patent Application Publications 2005/0069910, 2004/0072234, 2004/0043923, 2003/0087301, 2003/0054360, and 2002/0064780).
Nucleic acid targeting moieties that bind to a protein, a carbohydrate, a lipid, and/or a nucleic acid can be designed and/or identified. In some embodiments, nucleic acid targeting moieties can be designed and/or identified for use in the complexes of the invention that bind to proteins and/or characteristic portions thereof, such as tumor-markers, integrins, cell surface receptors, transmembrane proteins, intercellular proteins, ion channels, membrane transporter proteins, enzymes, antibodies, chimeric proteins etc. In some embodiments, nucleic acid targeting moieties can be designed and/or identified for use in the complexes of the invention that bind to carbohydrates and/or characteristic portions thereof, such as glycoproteins, sugars (e.g., monosaccharides, disaccharides and polysaccharides), glycocalyx (i.e., the carbohydrate-rich peripheral zone on the outside surface of most eukaryotic cells) etc. In some embodiments, nucleic acid targeting moieties can be designed and/or identified for use in the complexes of the invention that bind to lipids and/or characteristic portions thereof, such as oils, saturated fatty acids, unsaturated fatty acids, glycerides, hormones, steroids (e.g., cholesterol, bile acids), vitamins (e.g., vitamin E), phospholipids, sphingolipids, lipoproteins etc. In some embodiments, nucleic acid targeting moieties can be designed and/or identified for use in the complexes of the invention that bind to nucleic acids and/or characteristic portions thereof, such as DNA nucleic acids; RNA nucleic acids; modified DNA nucleic acids; modified RNA nucleic acids; and nucleic acids that include any combination of DNA, RNA, modified DNA, and modified RNA; etc.
Nucleic acid targeting moieties (e.g., aptamers or spiegelmers) may be designed and/or identified using any available method. In some embodiments, nucleic acid targeting moieties are designed and/or identified by identifying nucleic acid targeting moieties from a candidate mixture of nucleic acids.
The compounds and conjugates disclosed herein can be prepared via simple preparation methods (see, e.g., Examples 1-36). Such preparation methods enable easy purification.
Thus, also provided herein are methods for preparing the compounds of the invention. For example, compounds of the invention can be prepared as shown in any one of Reaction Schemes 4, 5, or 6:
wherein M is Cl or F;
X, Y, Ar, R, and n are the same as defined above.
Intermediate Compounds
In some embodiments, the compounds and conjugates disclosed herein can be prepared by a method that utilizes an intermediate compound having the structure according to Formula (IV):
or a pharmaceutically acceptable salt thereof, wherein:
phosphonic acid (—P(═O)(OH)2), ketone, C8-C10 cycloalkyl, —OH, —NHOH, —NHNH2, —SH, carboxylic acid (—COOH), acetylene (—C≡CH), azide (—N3), amino (—NH2), sulfonic acid (—SO3H), an alkynone derivative (—C(O)C≡C—Ra, wherein Ra is C1-C10 alkyl), and dihydrogen phosphate (—OP(═O)(OH)2);
or —Y′-TG, such as —NO2, —OC(O)(CH2)rC(O)R1, —O(CH2)r—Ar1—NO2, —NHNH2, —BR2R3,
In some embodiments, the compounds and conjugates disclosed herein can be prepared by a method that utilizes an intermediate compound having the structure according to Formula (V):
or a pharmaceutically acceptable salt thereof, wherein:
W, L1′, and Z are the same as defined for Formula (IV); and
TG is a triggering group, such as a β-galactoside, β-glucuronide, or a combination of β-galactoside and β-glucuronide.
In other embodiments, the compounds and conjugates disclosed herein can be prepared by a method that utilizes an intermediate compound having the structure according to Formula (VI):
or a pharmaceutically acceptable salt thereof, wherein:
In some embodiments, CB is an antibody, and Q is a drug. Accordingly, the compounds and conjugates disclosed herein may be used to conjugate an antibody to a drug moiety to form an antibody-drug conjugate (ADC). Antibody-drug conjugates (ADCs) may increase therapeutic efficacy in treating disease, e.g., cancer, due to the ability of the ADC to selectively deliver one or more drug moiety(s) to target tissues, such as a tumor-associated antigen. Thus, in certain embodiments, the invention provides ADCs for therapeutic use, e.g., treatment of cancer.
ADCs of the invention comprise an antibody linked to one or more drug moieties. The specificity of the ADC is defined by the specificity of the antibody. In one embodiment, an antibody is linked to one or more cytotoxic drug(s), which is delivered internally to a cancer cell.
Examples of drugs that may be used in the ADC of the invention are provided below. The terms “drug”, “agent”, and “drug moiety” are used interchangeably herein. The terms “linked” and “conjugated” are also used interchangeably herein and indicate that the antibody and moiety are covalently linked.
In some embodiments, the ADC has the following formula (Formula VII):
(D-L)n-Ab (VII)
In certain embodiments, each X is positioned in a ortho relationship or para relationship to Y′ on Ar.
In certain embodiments, at least one X and Y′ are positioned in a ortho relationship to each other on Ar. In certain such embodiments, E is 2 or 3. In certain such embodiments where E is 2, both occurrences of X are positioned in an ortho relationship to Y′.
In other embodiments, at least one X and Y′ are positioned in a para relationship to each other on Ar. In certain such embodiments, E is 1.
In certain embodiments, at least one X is positioned in a ortho relationship or para relationship to Y′.
In certain embodiments, at least one Rb other than the Rb attached to Ar represents Z′.
In some embodiments, n has a value ranging from 1 to 8, 1 to 7, 1 to 6, 1 to 5, 1 to 4, 1 to 3, 1 to 2, or is an integer having a value of 1. When cb is 1 and n is 1, the drug-to-antibody ratio (DAR) of an ADC is equivalent to the number of drugs present in (D-L). When cb is other than 1, the drug-to-antibody ratio (DAR) of an ADC is equivalent to ratio of the number of drugs present in (D-L) to the number of antibodies present in the conjugate.
Exemplary Drugs for Conjugation
The ADCs of the invention provide a targeted therapy that may, for example, reduce the side effects often seen with anti-cancer therapies, as the one or more active agent(s) or drug(s) is delivered to a specific cell.
For example, the drug may be selected from the group consisting of erlotinib (TARCEVA; Genentech/OSI Pharm.); bortezomib (VELCADE; MilleniumPharm.); fulvestrant (FASLODEX; AstraZeneca); sutent (SU11248; Pfizer); letrozole (FEMARA; Novartis); imatinib mesylate (GLEEVEC; Novartis); PTK787/ZK 222584 (Novartis); oxaliplatin (Eloxatin; Sanofi); 5-fluorouracil (5-FU); leucovorin; rapamycin (Sirolimus, RAPAMUNE; Wyeth); lapatinib (TYKERB, GSK572016; GlaxoSmithKline); lonafarnib (SCH 66336); sorafenib (BAY43-9006; Bayer Labs.); gefitinib (IRESSA; Astrazeneca); AG1478, AG1571 (SU 5271; Sugen); alkylating agent (e.g., thiotepa or CYTOXAN® cyclophosphamide); alkyl sulfonate (e.g., busulfan, improsulfan or piposulfan); aziridine (e.g., benzodopa, carboquone, meturedopa or uredopa); ethylenimine, methylmelamine, altretamine, triethylenemelamine, triethylenephosphoramide, triethylenethiophosphoramide, trimethylolmelamine; acetogenins (e.g., bullatacin or bullatacinone); camptothecin including synthetic analogue topotecan; bryostatin; callystatin; CC-1065 (including adozelesin, carzelesin or bizelesin synthetic analogues thereof); cryptophycins (e.g., cryptophycin 1 or cryptophycin 8); dolastatin; duocarmycin (including a synthetic analogue, KW-2189, and CB1-TM1); eleutherobin; pancratistatin; sarcodictyin; spongistatin; nitrogen mustard (e.g., chlorambucil, chlornaphazine, cholophosphamide, estramustine, ifosfamide, mechlorethamine, mechlorethamine oxide hydrochloride, melphalan, novembichin, phenesterine, prednimustine, trofosfamide or uracil mustard); nitrousurea (e.g., carmustine, chlorozotocin, fotemustine, lomustine, nimustine or ranimnustine); antibiotics (e.g., calicheamicin selected from calicheamycin gammal I and calicheamycin omega I 1 or dynemicin including dynemicin A as enediyne antibiotics); bisphosphonate (e.g., clodronate); esperamicin, neocarzinostatin chromophore or related chromoprotein enediyne antibiotic chromophores, aclacinomycin, actinomycin, antramycin, azaserine, bleomycin, cactinomycin, carabicin, carninomycin, carzinophilin, chromomycin, dactinomycin, daunorubicin, detorubucin, 6-diazo-5-oxo-L-norleucine, ADRLIMYCIN® doxorubicin (e.g., morpholino-doxorubicin, cyanomorpholino-doxorubicin, 2-pyrrolino-doxorubucin, liposomal doxorubicin or deoxydoxorubicin), epirubicin, esorubicin, marcellomycin, mitomycin (e.g., mitomycin C, mycophenolic acid, nogalamycin, olivomycin, peplomycin, potfiromycin, puromycin, quelamycin, rodorubicin, streptomigrin, streptozocin, tubercidin, ubenimex, zinostatin or zorubicin); anti-metabolites (e.g., 5-fluorouracil (5-FU)); folic acid analogues (e.g., denopterin, methotrexate, pteropterin or trimetrexate); purine analogs (e.g., fludarabine, 6-mercaptopurine, thiamiprine or thiguanine); pyrimidine analogs (e.g., ancitabine, azacitidine, 6-azauridine, carmofur, cytarabine, dideoxyuridine, doxifluridine, enocitabine or floxuridine); androgen (e.g., calusterone, dromostanolone propionate, epitiostanol, mepitiostane or testolactone); anti-adrenal (e.g., aminoglutethimide, mitotane or trilostane); folic acid replenisher (e.g., folinic acid); aceglatone; aldophosphamide glycoside; aminolevulinic acid; eniluracil; amsacrine; bestrabucil; bisantrene; edatraxate; defofamine; demecolcine; diaziquone; elfornithine; elliptinium acetate; epothilone; etoglucid; gallium nitrate; hydroxyurea; lentinan; lonidainine; maytansinoid (e.g., maytansine or ansamitocin; trichothecene (e.g., T-2 toxin, verracurin A, roridin A or anguidine); mitoguazone; mitoxantrone; mopidanmol; nitraerine; pentostatin; phenamet; pirarubicin; losoxantrone; 2-ethylhydrazide; procarbazine; PSK® polysaccharide; razoxane; rhizoxin; sizofiran; spirogermanium; tenuazonic acid; triaziquone; 2,2′,2″-trichlorotriethylamine; trichothecene (particularly, T-2 toxin, verracurin A, roridin A or anguidine); urethane; vindesine; dacarbazine; mannomustine; mitobronitol; mitolactol; pipobroman; gacytosine; arabinoside (‘Ara-C’); cyclophosphamide; thiotepa; taxoids (e.g., TAXOL® paclitaxel (Bristol-Myers Squibb Oncology, Princeton, N.J.), ABRAXANE™ cremophor-free, albumin-engineered nanoparticle formulation of paclitaxel, American Pharmaceutical Partners, Schaumber, Ill. or TAXOTERE® doxetaxel ((Rhone-Poulenc Rorer, Antony, France))); chloranbucil; gemcitabine; 6-thioguanine; mercaptopurine; platinum analog (e.g., cisplatin or carboplatin); vinblastine; platinum; etoposide, ifosfamide; mitoxantrone; vincristine; NAVELBINE® vinorelbine; novantrone; teniposide; edatrexate; daunomycin; aminopterin; xeloda; ibandronate; CPT-11; topoisomerase inhibitor RFS 2000; difluorometlhylornithine (DFMO); retinoid (e.g., retinoic acid); capecitabine; and a pharmaceutically acceptable salt thereof, a solvate thereof, an acid thereof or a derivative thereof.
Mitotic Inhibitors
In some embodiments, linkers of the invention may be used to conjugate an antibody to one or more mitotic inhibitor(s) to form an ADC for the treatment of cancer. The term “mitotic inhibitor”, as used herein, refers to a cytotoxic and/or therapeutic agent that blocks mitosis or cell division, a biological process particularly important to cancer cells. A mitotic inhibitor disrupts microtubules such that cell division is prevented, often by affecting microtubule polymerization or microtubule depolymerization. Thus, in certain embodiments, an antibody is conjugated to one or more mitotic inhibitor(s) that disrupts microtubule formation by inhibiting tubulin polymerization. In one embodiment, the mitotic inhibitor used in the ADCs of the invention is Taxol® (paclitaxel), Taxotere® (docetaxel), or Ixempra® (ixabepilone). Examples of mitotic inhibitors that may be used in the ADCs disclosed herein are provided below. Included in the genus of mitotic inhibitors are auristatins, described above.
Auristatins
The linkers of the invention may be used to conjugate an antibody to at least one auristatin. Auristatins represent a group of dolastatin analogs that have generally been shown to possess anticancer activity by interfering with microtubule dynamics and GTP hydrolysis, thereby inhibiting cellular division. For example, Auristatin E (U.S. Pat. No. 5,635,483) is a synthetic analogue of the marine natural product dolastatin 10, a compound that inhibits tubulin polymerization by binding to the same site on tubulin as the anticancer drug vincristine (G. R Pettit, Prog. Chem. Org. Nat. Prod, 70: 1-79 (1997)). Dolastatin 10, auristatin PE, and auristatin E are linear peptides having four amino acids, three of which are unique to the dolastatin class of compounds. Exemplary embodiments of the auristatin subclass of mitotic inhibitors include, but are not limited to, monomethyl auristatin D (MMAD or auristatin D derivative), monomethyl auristatin E (MMAE or auristatin E derivative), monomethyl auristatin F (MMAF or auristatin F derivative), auristatin F phenylenediamine (AFP), auristatin EB (AEB), auristatin EFP (AEFP), and 5-benzoylvaleric acid-AE ester (AEVB). The synthesis and structure of auristatin derivatives are described in U.S. Patent Application Publication Nos. 2003-0083263, 2005-0238649 and 2005-0009751; International Patent Publication No. WO 04/010957, International Patent Publication No. WO 02/088172, and U.S. Pat. Nos. 6,323,315; 6,239,104; 6,034,065; 5,780,588; 5,665,860; 5,663,149; 5,635,483; 5,599,902; 5,554,725; 5,530,097; 5,521,284; 5,504,191; 5,410,024; 5,138,036; 5,076,973; 4,986,988; 4,978,744; 4,879,278; 4,816,444; and 4,486,414, each of which is incorporated by reference herein.
Dolastatins
The linkers of the invention may be used to conjugate an antibody to at least one dolastatin to form an ADC. Dolastatins are short peptidic compounds isolated from the Indian Ocean sea hare Dolabella auricularia (see Pettit et al., J. Am. Chem. Soc., 1976, 98, 4677). Examples of dolastatins include dolastatin 10 and dolatstin 15. Dolastatin 15, a seven-subunit depsipeptide derived from Dolabella auricularia, and is a potent antimitotic agent structurally related to the antitubulin agent dolastatin 10, a five-subunit peptide obtained from the same organism. Thus, in one embodiment, the ADC of the invention comprises an antibody, a linker as described herein, and at least one dolastatin. Auristatins, described above, are synthetic derivatives of dolastatin 10.
Maytansinoids
The linkers of the invention may be used to conjugate an antibody to at least one maytansinoid to form an ADC. Maytansinoids are potent antitumor agents that were originally isolated from members of the higher plant families Celastraceae, Rhamnaceae and Euphorbiaceae, as well as some species of mosses (Kupchan et al, J. Am. Chem. Soc. 94:1354-1356 [1972]; Wani et al, J. Chem. Soc. Chem. Commun 390: [1973]; Powell et al, J. Nat. Prod. 46:660-666 [1983]; Sakai et al, J. Nat. Prod. 51:845-850 [1988]; and Suwanborirux et al, Experientia 46:117-120 [1990]). Evidence suggests that maytansinoids inhibit mitosis by inhibiting polymerization of the microtubule protein tubulin, thereby preventing formation of microtubules (see, e.g., U.S. Pat. No. 6,441,163 and Remillard et al., Science, 189, 1002-1005 (1975)). Maytansinoids have been shown to inhibit tumor cell growth in vitro using cell culture models, and in vivo using laboratory animal systems. Moreover, the cytotoxicity of maytansinoids is 1,000-fold greater than conventional chemotherapeutic agents, such as, for example, methotrexate, daunorubicin, and vincristine (see, e.g., U.S. Pat. No. 5,208,020).
Maytansinoids to include maytansine, maytansinol, C-3 esters of maytansinol, and other maytansinol analogues and derivatives (see, e.g., U.S. Pat. Nos. 5,208,020 and 6,441,163, each of which is incorporated by reference herein). C-3 esters of maytansinol can be naturally occurring or synthetically derived. Moreover, both naturally occurring and synthetic C-3 maytansinol esters can be classified as a C-3 ester with simple carboxylic acids, or a C-3 ester with derivatives of N-methyl-L-alanine, the latter being more cytotoxic than the former. Synthetic maytansinoid analogues are described in, for example, Kupchan et al., J. Med. Chem., 21, 31-37 (1978).
Suitable maytansinoids for use in ADCs of the invention can be isolated from natural sources, synthetically produced, or semi-synthetically produced. Moreover, the maytansinoid can be modified in any suitable manner, so long as sufficient cytotoxicity is preserved in the ultimate conjugate molecule. The structure of an exemplary maytansinoid, mertansine (DM1), is provided below.
Representative examples of maytansinoids include, but are not limited, to DM1 (N2′-deacetyl-N2′-(3-mercapto-1-oxopropyl)-maytansine; also referred to as mertansine, drug maytansinoid 1; ImmunoGen, Inc.; see also Chari et al. (1992) Cancer Res 52:127), DM2, DM3 (N2′-deacetyl-N2′-(4-mercapto-1-oxopentyl)-maytansine), DM4 (4-methyl-4-mercapto-1-oxopentyl)-maytansine) and maytansinol (a synthetic maytansinoid analog). Other examples of maytansinoids are described in U.S. Pat. No. 8,142,784, incorporated by reference herein.
Ansamitocins are a group of maytansinoid antibiotics that have been isolated from various bacterial sources. These compounds have potent antitumor activities. Representative examples include, but are not limited to ansamitocin P1, ansamitocin P2, ansamitocin P3, and ansamitocin P4.
Plant Alkaloids
The linkers of the invention may be used to conjugate an antibody to at least one plant alkaloid, e.g., a taxane or vinca alkaloid. Plant alkaloids are chemotherapy treatments derived made from certain types of plants. The vinca alkaloids are made from the periwinkle plant Catharanthus rosea), whereas the taxanes are made from the bark of the Pacific Yew tree taxus). Both the vinca alkaloids and taxanes are also known as antimicrotubule agents, and are described in more detail below.
Taxanes
The linkers of the invention may be used to conjugate an antibody to at least one taxane. The term “taxane” as used herein refers to the class of antineoplastic agents having a mechanism of microtubule action and having a structure that includes the taxane ring structure and a stereospecific side chain that is required for cytostatic activity. Also included within the term “taxane” are a variety of known derivatives, including both hydrophilic derivatives, and hydrophobic derivatives. Taxane derivatives include, but not limited to, galactose and mannose derivatives described in International Patent Application No. WO 99/18113; piperazino and other derivatives described in WO 99/14209; taxane derivatives described in WO 99/09021, WO 98/22451, and U.S. Pat. No. 5,869,680; 6-thio derivatives described in WO 98/28288; sulfenamide derivatives described in U.S. Pat. No. 5,821,263; and taxol derivative described in U.S. Pat. No. 5,415,869, each of which is incorporated by reference herein. Taxane compounds have also previously been described in U.S. Pat. Nos. 5,641,803, 5,665,671, 5,380,751, 5,728,687, 5,415,869, 5,407,683, 5,399,363, 5,424,073, 5,157,049, 5,773,464, 5,821,263, 5,840,929, 4,814,470, 5,438,072, 5,403,858, 4,960,790, 5,433,364, 4,942,184, 5,362,831, 5,705,503, and 5,278,324, all of which are expressly incorporated by reference. Further examples of taxanes include, but are not limited to, docetaxel (Taxotere®; Sanofi Aventis), paclitaxel (Abraxane® or Taxol®; Abraxis Oncology), and nanoparticle paclitaxel (ABI-007/Abraxene®; Abraxis Bioscience).
In one embodiment, the linkers of the invention may be used to conjugate an antibody to at least one docetaxel. In one embodiment, the linkers of the invention may be used to conjugate an antibody to at least one paclitaxel.
Vinca Alkaloids
In one embodiment, the linkers of the invention may be used to conjugate an antibody to at least one vinca alkaloid. Vinca alkaloids are a class of cell-cycle-specific drugs that work by inhibiting the ability of cancer cells to divide by acting upon tubulin and preventing the formation of microtubules. Examples of vinca alkaloids that may be used in the ADCs of the invention include, but are not limited to, vindesine sulfate, vincristine, vinblastine and vinorelbine.
Antitumor Antibiotics
The linkers of the invention may be used to conjugate an antibody to one or more antitumor antibiotic(s) for the treatment of cancer. As used herein, the term “antitumor antibiotic” means an antineoplastic drug that blocks cell growth by interfering with DNA and is made from a microorganism. Often, antitumor antibiotics either break up DNA strands or slow down or stop DNA synthesis. Examples of antitumor antibiotics that may be included in the ADCs disclosed herein include, but are not limited to, actinomycines (e.g., pyrrolo[2,1-c][1,4]benzodiazepines), anthracyclines, calicheamicins, and duocarmycins, described in more detail below.
Actinomycines
The linkers of the invention may be used to conjugate an antibody to at least one actinomycine. Actinomycines are a subclass of antitumor antibiotics isolated from bacteria of the genus Streptomyces. Representative examples actinomycines include, but are not limited to, actinomycin D (Cosmegen [also known as actinomycin, dactinomycin, actinomycin IV, actinomycin C1], Lundbeck, Inc.), anthramycin, chicamycin A, DC-81, mazethramycin, neothramycin A, neothramycin B, porothramycin, prothracarcin B, SG2285, sibanomicin, sibiromycin and tomaymycin. In one embodiment, D is pyrrolobenzodiazepine (PBD). Examples of PBDs include, but are not limited to, anthramycin, chicamycin A, DC-81, mazethramycin, neothramycin A, neothramycin B, porothramycin, prothracarcin B, SG2000 (SJG-136), SG2202 (ZC-207), SG2285 (ZC-423), sibanomicin, sibiromycin and tomaymycin. Thus, in one embodiment, D is actinomycine, e.g., actinomycin D, or PBD, e.g., a pyrrolobenzodiazepine (PBD) dimer.
The structures of PBDs can be found, for example, in U.S. Patent Application Pub. Nos. 2013/0028917 and 2013/0028919, and in WO 2011/130598 A1, each of which are incorporated herein by reference in their entirety. The generic structure of a PBD is provided below.
PBDs differ in the number, type and position of substituents, in both their aromatic A rings and pyrrolo C rings, and in the degree of saturation of the C ring. In the B-ring, there is generally an imine (N═C), a carbinolamine (NH—CH(OH)), or a carbinolamine methyl ether (NH—CH(OMe)) at the N10-C11 position which is the electrophilic centre responsible for alkylating DNA. All of the known natural products have an (S)-configuration at the chiral C11α position which provides them with a right-handed twist when viewed from the C ring towards the A ring. Further examples of PBDs which may be conjugated to antibodies via the linkers disclosed herein can be found, for example, in U.S. Patent Application Publication Nos. 2013/0028917 A1 and 2013/0028919 A1, in U.S. Pat. No. 7,741,319 B2, and in WO 2011/130598 A1 and WO 2006/111759 A1, each of which are incorporated herein by reference in their entirety.
Anthracyclines
The linkers of the invention may be used to conjugate an antibody to at least one anthracycline. Anthracyclines are a subclass of antitumor antibiotics isolated from bacteria of the genus Streptomyces. Representative examples include, but are not limited to daunorubicin (Cerubidine, Bedford Laboratories), doxorubicin (Adriamycin, Bedford Laboratories; also referred to as doxorubicin hydrochloride, hydroxydaunorubicin, and Rubex), epirubicin (Ellence, Pfizer), and idarubicin (Idamycin; Pfizer Inc.). Thus, in one embodiment, D is anthracycline, e.g., doxorubicin.
Calicheamicins
The linkers of the invention may be used to conjugate an antibody to at least one calicheamicin. Calicheamicins are a family of enediyne antibiotics derived from the soil organism Micromonospora echinospora. Calicheamicins bind the minor groove of DNA and induce double-stranded DNA breaks, resulting in cell death with a 100 fold increase over other chemotherapeutics (Damle et al. (2003) Curr Opin Pharmacol 3:386). Preparation of calicheamicins that may be used as drug conjugates in the invention have been described, see U.S. Pat. Nos. 5,712,374; 5,714,586; 5,739,116; 5,767,285; 5,770,701; 5,770,710; 5,773,001; and 5,877,296. Structural analogues of calicheamicin which may be used include, but are not limited to, Y1 I, α2 I, α3 I, N-acetyl-γ1 I, PSAG and θI 1 (Hinman et al., Cancer Research 53:3336-3342 (1993), Lode et al., Cancer Research 58:2925-2928 (1998) and the aforementioned U.S. Pat. Nos. 5,712,374; 5,714,586; 5,739,116; 5,767,285; 5,770,701; 5,770,710; 5,773,001; and 5,877,296). Thus, in one embodiment, D is calicheamicin.
Duocarmycins
The linkers of the invention may be used to conjugate an antibody to at least one duocarmycin. Duocarmycins are a subclass of antitumor antibiotics isolated from bacteria of the genus Streptomyces. (see Nagamura and Saito (1998) Chemistry of Heterocyclic Compounds, Vol. 34, No. 12). Duocarmycins bind to the minor groove of DNA and alkylate the nucleobase adenine at the N3 position (Boger (1993) Pure and Appl Chem 65(6):1123; and Boger and Johnson (1995) PNAS USA 92:3642). Synthetic analogs of duocarmycins include, but are not limited to, adozelesin, bizelesin, and carzelesin. Thus, in one embodiment, the D is duocarmycin.
Other Antitumor Antibiotics
In addition to the foregoing, additional antitumor antibiotics that may be used in the ADCs of the invention include bleomycin (Blenoxane, Bristol-Myers Squibb), mitomycin, and plicamycin (also known as mithramycin).
Immunomodulating Agents
In some embodiments, the linkers of the invention may be used to conjugate an antibody to at least one immunomodulating agent. As used herein, the term “immunomodulating agent” refers to an agent that can stimulate or modify an immune response. In one embodiment, an immunomodulating agent is an immunostimuator which enhances a subject's immune response. In some embodiments, an immunomodulating agent is an immunosuppressant, which prevents or decreases a subject's immune response. An immunomodulating agent may modulate myeloid cells (monocytes, macrophages, dendritic cells, megakaryocytes and granulocytes) or lymphoid cells (T cells, B cells and natural killer (NK) cells) and any further differentiated cell thereof. Representative examples include, but are not limited to, bacillus calmette-guerin (BCG) and levamisole (Ergamisol). Other examples of immunomodulating agents that may be used in the ADCs of the invention include, but are not limited to, cancer vaccines, cytokines, and immunomodulating gene therapy.
Cancer Vaccines
The linkers of the invention may be used to conjugate an antibody to a cancer vaccine. As used herein, the term “cancer vaccine” refers to a composition (e.g., a tumor antigen and a cytokine) that elicits a tumor-specific immune response. The response is elicited from the subject's own immune system by administering the cancer vaccine, or, in the case of the instant invention, administering an ADC comprising an antibody and a cancer vaccine. In preferred embodiments, the immune response results in the eradication of tumor cells in the body (e.g., primary or metastatic tumor cells). The use of cancer vaccines generally involves the administration of a particular antigen or group of antigens that are, for example, present on the surface a particular cancer cell, or present on the surface of a particular infectious agent shown to facilitate cancer formation. In some embodiments, the use of cancer vaccines is for prophylactic purposes, while in other embodiments, the use is for therapeutic purposes. Non-limiting examples of cancer vaccines that may be used in the ADCs disclosed herein include, recombinant bivalent human papillomavirus (HPV) vaccine types 16 and 18 vaccine (Cervarix, GlaxoSmithKline), recombinant quadrivalent human papillomavirus (HPV) types 6, 11, 16, and 18 vaccine (Gardasil, Merck & Company), and sipuleucel-T (Provenge, Dendreon). Thus, in one embodiment, D is a cancer vaccine that is either an immunostimulator or is an immunosuppressant.
Cytokines
The linkers of the invention may be used to conjugate an antibody at least one cytokine. The term “cytokine” generally refers to proteins released by one cell population which act on another cell as intercellular mediators. Cytokines directly stimulate immune effector cells and stromal cells at the tumor site and enhance tumor cell recognition by cytotoxic effector cells (Lee and Margolin (2011) Cancers 3:3856). Numerous animal tumor model studies have demonstrated that cytokines have broad anti-tumor activity and this has been translated into a number of cytokine-based approaches for cancer therapy (Lee and Margoli, supra). Recent years have seen a number of cytokines, including GM-CSF, IL-7, IL-12, IL-15, IL-18 and IL-21, enter clinical trials for patients with advanced cancer (Lee and Margoli, supra).
Examples of cytokines that may be used in the ADCs of the invention include, but are not limited to, parathyroid hormone; thyroxine; insulin; proinsulin; relaxin; prorelaxin; glycoprotein hormones such as follicle stimulating hormone (FSH), thyroid stimulating hormone (TSH), and luteinizing hormone (LH); hepatic growth factor; fibroblast growth factor; prolactin; placental lactogen; tumor necrosis factor; mullerian-inhibiting substance; mouse gonadotropin-associated peptide; inhibin; activin; vascular endothelial growth factor; integrin; thrombopoietin (TPO); nerve growth factors such as NGF; platelet-growth factor; transforming growth factors (TGFs); insulin-like growth factor-I and -II; erythropoietin (EPO); osteoinductive factors; interferons such as interferon α, β, and γ, colony stimulating factors (CSFs); granulocyte-macrophage-C-SF (GM-CSF); and granulocyte-CSF (G-CSF); interleukins (ILs) such as IL-1, IL-la, IL-2, IL-3, IL-4, IL-5, IL-6, IL-7, IL-8, IL-9, IL-11, IL-12; tumor necrosis factor; and other polypeptide factors including LIF and kit ligand (KL). As used herein, the term cytokine includes proteins from natural sources or from recombinant cell culture and biologically active equivalents of the native sequence cytokines. Thus, in one embodiment, D is a cytokine.
Colony-Stimulating Factors (CSFs)
The linkers of the invention may be used to conjugate an antibody to at least one colony stimulating factor (CSF). Colony stimulating factors (CSFs) are growth factors that assist the bone marrow in making red blood cells. Because some cancer treatments (e.g., chemotherapy) can affect white blood cells (which help fight infection), colony-stimulating factors may be introduced to help support white blood cell levels and strengthen the immune system. Colony-stimulating factors may also be used following a bone marrow transplant to help the new marrow start producing white blood cells. Representative examples of CSFs that may be used in ADCs disclosed herein include, but are not limited to erythropoietin (Epoetin), filgrastim (Neopogen (also known as granulocyte colony-stimulating factor (G-CSF); Amgen, Inc.), sargramostim (leukine (granulocyte-macrophage colony-stimulating factor and GM-CSF); Genzyme Corporation), promegapoietin, and Oprelvekin (recombinant IL-11; Pfizer, Inc.). Thus, in one embodiment, D is a CSF.
Gene Therapy
The linkers of the invention may be used to conjugate an antibody to at least one nucleic acid (directly or indirectly via a carrier) for gene therapy. Gene therapy generally refers to the introduction of genetic material into a cell whereby the genetic material is designed to treat a disease. As it pertains to immunomodulatory agents, gene therapy is used to stimulate a subject's natural ability to inhibit cancer cell proliferation or kill cancer cells. In one embodiment, the ADC of the invention comprises a nucleic acid encoding a functional, therapeutic gene that is used to replace a mutated or otherwise dysfunctional (e.g., truncated) gene associated with cancer. In other embodiments, the ADC of the invention comprises a nucleic acid that encodes for or otherwise provides for the production of a therapeutic protein to treat cancer. The nucleic acid that encodes the therapeutic gene may be directly conjugated to the antibody, or alternatively, may be conjugated to the antibody through a carrier. Examples of carriers that may be used to deliver a nucleic acid for gene therapy include, but are not limited to, viral vectors or liposomes.
Alkylating Agents
The linkers of the invention may be used to conjugate an antibody to one or more alkylating agent(s). Alkylating agents are a class of antineoplastic compounds that attaches an alkyl group to DNA. Examples of alkylating agents that may be used in the ADCs of the invention include, but are not limited to, alkyl sulfonates, ethylenimimes, methylamine derivatives, epoxides, nitrogen mustards, nitrosoureas, triazines and hydrazines.
Alkyl Sulfonates
The linkers of the invention may be used to conjugate an antibody to at least one alkyl sulfonate. Alkyl sulfonates are a subclass of alkylating agents with a general formula: R—SO2—O—R1, wherein R and R1 are typically alkyl or aryl groups. A representative example of an alkyl sulfonate is busulfan (Myleran®, GlaxoSmithKline; Busulfex IV®, PDL BioPharma, Inc.).
Nitrogen Mustards
The linkers of the invention may be used to conjugate an antibody to at least one nitrogen mustard. Representative examples of this subclass of anti-cancer compounds include, but are not limited to chlorambucil (Leukeran®, GlaxoSmithKline), cyclophosphamide (Cytoxan®, Bristol-Myers Squibb; Neosar, Pfizer, Inc.), estramustine (estramustine phosphate sodium or Estracyt®), Pfizer, Inc.), ifosfamide (Ifex®, Bristol-Myers Squibb), mechlorethamine (Mustargen®, Lundbeck Inc.), and melphalan (Alkeran® or L-Pam® or phenylalanine mustard; GlaxoSmithKline).
Nitrosoureas
The linkers of the invention may be used to conjugate an antibody to at least one nitrosourea. Nitrosoureas are a subclass of alkylating agents that are lipid soluble. Representative examples include, but are not limited to, carmustine (BCNU [also known as BiCNU, N,N-bis(2-chloroethyl)-N-nitrosourea, or 1,3-bis(2-chloroethyl)-1-nitrosourea], Bristol-Myers Squibb), fotemustine (also known as Muphoran®), lomustine (CCNU or 1-(2-chloro-ethyl)-3-cyclohexyl-1-nitrosourea, Bristol-Myers Squibb), nimustine (also known as ACNU), and streptozocin (Zanosar®, Teva Pharmaceuticals).
Triazines and Hydrazines
The linkers of the invention may be used to conjugate an antibody to at least one triazine or hydrazine. Triazines and hydrazines are a subclass of nitrogen-containing alkylating agents. In some embodiments, these compounds spontaneously decompose or can be metabolized to produce alkyl diazonium intermediates that facilitate the transfer of an alkyl group to nucleic acids, peptides, and/or polypeptides, thereby causing mutagenic, carcinogenic, or cytotoxic effects. Representative examples include, but are not limited to dacarbazine (DTIC-Dome, Bayer Healthcare Pharmaceuticals Inc.), procarbazine (Mutalane®, Sigma-Tau Pharmaceuticals, Inc.), and temozolomide (Temodar®, Schering Plough).
Other Alkylating Agents
The linkers of the invention may be used to conjugate an antibody to at least one ethylenimine, methylamine derivative, or epoxide. Ethylenimines are a subclass of alkylating agents that typically containing at least one aziridine ring. Epoxides represent a subclass of alkylating agents that are characterized as cyclic ethers with only three ring atoms.
Representatives examples of ethylenimines include, but are not limited to thiopeta (Thioplex, Amgen), diaziquone (also known as aziridinyl benzoquinone (AZQ)), and mitomycin C. Mitomycin C is a natural product that contains an aziridine ring and appears to induce cytoxicity through cross-linking DNA (Dorr R T, et al. Cancer Res. 1985; 45:3510; Kennedy K A, et al Cancer Res. 1985; 45:3541). Representative examples of methylamine derivatives and their analogs include, but are not limited to, altretamine (Hexalen, MGI Pharma, Inc.), which is also known as hexamethylamine and hexastat. Representative examples of epoxides of this class of anti-cancer compound include, but are not limited to dianhydrogalactitol. Dianhydrogalactitol (1,2:5,6-dianhydrodulcitol) is chemically related to the aziridines and generally facilitate the transfer of an alkyl group through a similar mechanism as described above. Dibromodulcitol is hydrolyzed to dianhydrogalactitol and thus is a pro-drug to an epoxide (Sellei C, et al. Cancer Chemother Rep. 1969; 53:377).
Antiangiogenic Agents
In some embodiments, the linkers of the invention may be used to conjugate an antibody to at least one antiangiogenic agent. Antiangiogenic agents inhibit the growth of new blood vessels. Antiangiogenic agents exert their effects in a variety of ways. In some embodiments, these agents interfere with the ability of a growth factor to reach its target. For example, vascular endothelial growth factor (VEGF) is one of the primary proteins involved in initiating angiogenesis by binding to particular receptors on a cell surface. Thus, certain antiangiogenic agents, that prevent the interaction of VEGF with its cognate receptor, prevent VEGF from initiating angiogenesis. In other embodiments, these agents interfere with intracellular signaling cascades. For example, once a particular receptor on a cell surface has been triggered, a cascade of other chemical signals is initiated to promote the growth of blood vessels. Thus, certain enzymes, for example, some tyrosine kinases, that are known to facilitate intracellular signaling cascades that contribute to, for example, cell proliferation, are targets for cancer treatment. In other embodiments, these agents interfere with intercellular signaling cascades. Yet, in other embodiments, these agents disable specific targets that activate and promote cell growth or by directly interfering with the growth of blood vessel cells. Angiogenesis inhibitory properties have been discovered in more than 300 substances with numerous direct and indirect inhibitory effects.
Representative examples of antiangiogenic agents that may be used in the ADCs of the invention include, but are not limited to, angiostatin, ABX EGF, C1-1033, PKI-166, EGF vaccine, EKB-569, GW2016, ICR-62, EMD 55900, CP358, PD153035, AG1478, IMC-C225 (Erbitux, ZD1839 (Iressa), OSI-774, Erlotinib (tarceva), angiostatin, arrestin, endostatin, BAY 12-9566 and w/fluorouracil or doxorubicin, canstatin, carboxyamidotriozole and with paclitaxel, EMD121974, S-24, vitaxin, dimethylxanthenone acetic acid, IM862, Interleukin-12, Interleukin-2, NM-3, HuMV833, PTK787, RhuMab, angiozyme (ribozyme), IMC-1C11, Neovastat, marimstat, prinomastat, BMS-275291, COL-3, MM1270, SU101, SU6668, SU11248, SU5416, with paclitaxel, with gemcitabine and cisplatin, and with irinotecan and cisplatin and with radiation, tecogalan, temozolomide and PEG interferon α2b, tetrathiomolybdate, TNP-470, thalidomide, CC-5013 and with taxotere, tumstatin, 2-methoxyestradiol, VEGF trap, mTOR inhibitors (deforolimus, everolimus (Afinitor, Novartis Pharmaceutical Corporation), and temsirolimus (Torisel, Pfizer, Inc.)), tyrosine kinase inhibitors (e.g., erlotinib (Tarceva, Genentech, Inc.), imatinib (Gleevec, Novartis Pharmaceutical Corporation), gefitinib (Iressa, AstraZeneca Pharmaceuticals), dasatinib (Sprycel, Brystol-Myers Squibb), sunitinib (Sutent, Pfizer, Inc.), nilotinib (Tasigna, Novartis Pharmaceutical Corporation), lapatinib (Tykerb, GlaxoSmithKline Pharmaceuticals), sorafenib (Nexavar, Bayer and Onyx), phosphoinositide 3-kinases (PI3K).
Antimetabolites
The linkers of the invention may be used to conjugate an antibody to at least one antimetabolite. Antimetabolites are types of chemotherapy treatments that are very similar to normal substances within the cell. When the cells incorporate an antimetabolite into the cellular metabolism, the result is negative for the cell, e.g., the cell is unable to divide. Antimetabolites are classified according to the substances with which they interfere. Examples of antimetabolites that may be used in the ADCs of the invention include, but are not limited to, a folic acid antagonist (e.g., methotrexate), a pyrimidine antagonist (e.g., 5-Fluorouracil, Foxuridine, Cytarabine, Capecitabine, and Gemcitabine), a purine antagonist (e.g., 6-Mercaptopurine and 6-Thioguanine) and an adenosine deaminase inhibitor (e.g., Cladribine, Fludarabine, Nelarabine and Pentostatin), as described in more detail below.
Antifolates
The linkers of the invention may be used to conjugate an antibody to at least one antifolate. Antifolates are a subclass of antimetabolites that are structurally similar to folate. Representative examples include, but are not limited to, methotrexate, 4-amino-folic acid (also known as aminopterin and 4-aminopteroic acid), lometrexol (LMTX), pemetrexed (Alimpta, Eli Lilly and Company), and trimetrexate (Neutrexin, Ben Venue Laboratories, Inc.)
Purine Antagonists
The linkers of the invention may be used to conjugate an antibody to at least one purine antagonist Purine analogs are a subclass of antimetabolites that are structurally similar to the group of compounds known as purines. Representative examples of purine antagonists include, but are not limited to, azathioprine (Azasan, Salix; Imuran, GlaxoSmithKline), cladribine (Leustatin [also known as 2-CdA], Janssen Biotech, Inc.), mercaptopurine (Purinethol [also known as 6-mercaptoethanol], GlaxoSmithKline), fludarabine (Fludara, Genzyme Corporation), pentostatin (Nipent, also known as 2′-deoxycoformycin (DCF)), 6-thioguanine (Lanvis [also known as thioguanine], GlaxoSmithKline).
Pyrimidine Antagonists
The linkers of the invention may be used to conjugate an antibody to at least one pyrimidine antagonist. Pyrimidine antagonists are a subclass of antimetabolites that are structurally similar to the group of compounds known as purines. Representative examples of pyrimidine antagonists include, but are not limited to azacitidine (Vidaza, Celgene Corporation), capecitabine (Xeloda, Roche Laboratories), Cytarabine (also known as cytosine arabinoside and arabinosylcytosine, Bedford Laboratories), decitabine (Dacogen, Eisai Pharmaceuticals), 5-fluorouracil (Adrucil, Teva Pharmaceuticals; Efudex, Valeant Pharmaceuticals, Inc), 5-fluoro-2′-deoxyuridine 5′-phosphate (FdUMP), 5-fluorouridine triphosphate, and gemcitabine (Gemzar, Eli Lilly and Company).
Boron-Containing Agents
The linkers of the invention may be used to conjugate an antibody to at least one boron containing agent. Boron-containing agents comprise a class of cancer therapeutic compounds which interfere with cell proliferation. Representative examples of boron containing agents include, but are not limited, to borophycin and bortezomib (Velcade, Millennium Pharmaceuticals).
Chemoprotective Agents
The linkers of the invention may be used to conjugate an antibody to at least one chemoprotective agent. Chemoprotective drugs are a class of compounds, which help protect the body against specific toxic effects of chemotherapy. Chemoprotective agents may be administered with various chemotherapies in order to protect healthy cells from the toxic effects of chemotherapy drugs, while simultaneously allowing the cancer cells to be treated with the administered chemotherapeutic. Representative chemoprotective agents include, but are not limited to amifostine (Ethyol, Medimmune, Inc.), which is used to reduce renal toxicity associated with cumulative doses of cisplatin, dexrazoxane (Totect, Apricus Pharma; Zinecard), for the treatment of extravasation caused by the administration of anthracycline (Totect), and for the treatment of cardiac-related complications caused by the administration of the antitumor antibiotic doxorubicin (Zinecard), and mesna (Mesnex, Bristol-Myers Squibb), which is used to prevent hemorrhagic cystitis during chemotherapy treatment with ifocfamide.
Hormone Agents
The linkers of the invention may be used to conjugate an antibody to at least one hormone agent. A hormone agent (including synthetic hormones) is a compound that interferes with the production or activity of endogenously produced hormones of the endocrine system. In some embodiments, these compounds interfere with cell growth or produce a cytotoxic effect. Non-limiting examples include androgens, estrogens, medroxyprogesterone acetate (Provera, Pfizer, Inc.), and progestins.
Antihormone Agents
The linkers of the invention may be used to conjugate an antibody to at least one antihormone agent. An “antihormone” agent is an agent that suppresses the production of and/or prevents the function of certain endogenous hormones. In one embodiment, the antihormone agent interferes with the activity of a hormone selected from the group comprising androgens, estrogens, progesterone, and goanadotropin-releasing hormone, thereby interfering with the growth of various cancer cells. Representative examples of antihormone agents include, but are not limited to, aminoglutethimide, anastrozole (Arimidex, AstraZeneca Pharmaceuticals), bicalutamide (Casodex, AstraZeneca Pharmaceuticals), cyproterone acetate (Cyprostat, Bayer PLC), degarelix (Firmagon, Ferring Pharmaceuticals), exemestane (Aromasin, Pfizer Inc.), flutamide (Drogenil, Schering-Plough Ltd), fulvestrant (Faslodex, AstraZeneca Pharmaceuticals), goserelin (Zolodex, AstraZeneca Pharmaceuticals), letrozole (Femara, Novartis Pharmaceuticals Corporation), leuprolide (Prostap), lupron, medroxyprogesterone acetate (Provera, Pfizer Inc.), Megestrol acetate (Megace, Bristol-Myers Squibb Company), tamoxifen (Nolvadex, AstraZeneca Pharmaceuticals), and triptorelin (Decapetyl, Ferring).
Corticosteroids
The linkers of the invention may be used to conjugate an antibody to at least one corticosteroid. Corticosteroids may be used in the ADCs of the invention to decrease inflammation. An example of a corticosteroid includes, but is not limited to, a glucocorticoid, for example, prednisone (Deltasone, Pharmacia & Upjohn Company, a division of Pfizer, Inc.).
Photoactive Therapeutic Agents
The linkers of the invention may be used to conjugate an antibody to at least one photoactive therapeutic agent. Photoactive therapeutic agents include compounds that can be deployed to kill treated cells upon exposure to electromagnetic radiation of a particular wavelength. Therapeutically relevant compounds absorb electromagnetic radiation at wavelengths which penetrate tissue. In preferred embodiments, the compound is administered in a non-toxic form that is capable of producing a photochemical effect that is toxic to cells or tissue upon sufficient activation. In other preferred embodiments, these compounds are retained by cancerous tissue and are readily cleared from normal tissues. Non-limiting examples include various chromogens and dyes.
Oligonucleotides
The linkers of the invention may be used to conjugate an antibody to at least one oligonucleotide. Oligonucleotides are made of short nucleic acid chains that work by interfering with the processing of genetic information. In some embodiments, the oligonucleotides for use in ADCs are unmodified single-stranded and/or double-stranded DNA or RNA molecules, while in other embodiments, these therapeutic oligonucleotides are chemically-modified single-stranded and/or double-stranded DNA or RNA molecules. In one embodiment, the oligonucleotides used in the ADCs are relatively short (19-25 nucleotides) and hybridize to a unique nucleic acid sequence in the total pool of nucleic acid targets present in cells. Some of the important oligonucleotide technologies include the antisense oligonucleotides (including RNA interference (RNAi)), aptamers, CpG oligonucleotides, and ribozymes.
Antisense Oligonucleotides
The linkers of the invention may be used to conjugate an antibody to at least one antisense oligonucleotide. Antisense oligonucleotides are designed to bind to RNA through Watson-Crick hybridization. In some embodiments the antisense oligonucleotide is complementary to a nucleotide encoding a region, domain, portion, or segment of the conjugated antibody. In some embodiments, the antisense oligonucleotide comprises from about 5 to about 100 nucleotides, from about 10 to about 50 nucleotides, from about 12 to about 35, and from about 18 to about 25 nucleotides
There are multiple mechanisms that can be exploited to inhibit the function of the RNA once the oligonucleotide binds to the target RNA (Crooke S T. (1999). Biochim. Biophys. Acta, 1489, 30-42). The best-characterized antisense mechanism results in cleavage of the targeted RNA by endogenous cellular nucleases, such as RNase H or the nuclease associated with the RNA interference mechanism. However, oligonucleotides that inhibit expression of the target gene by non-catalytic mechanisms, such as modulation of splicing or translation arrest, can also be potent and selective modulators of gene function.
Another RNase-dependent antisense mechanism that has recently received much attention is RNAi (Fire et al. (1998). Nature, 391, 806-811; Zamore PD. (2002). Science, 296, 1265-1269.). RNA interference (RNAi) is a post-transcriptional process where a double stranded RNA inhibits gene expression in a sequence specific fashion. In some embodiments, the RNAi effect is achieved through the introduction of relatively longer double-stranded RNA (dsRNA), while in preferred embodiments, this RNAi effect is achieved by the introduction of shorter double-stranded RNAs, e g small interfering RNA (siRNA) and/or microRNA (miRNA). In yet another embodiment, RNAi can also be achieved by introducing of plasmid that generate dsRNA complementary to target gene. In each of the foregoing embodiments, the double-stranded RNA is designed to interfere with the gene expression of a particular the target sequence within cells. Generally, the mechanism involves conversion of dsRNA into short RNAs that direct ribonucleases to homologous mRNA targets (summarized, Ruvkun, Science 2294:797 (2001)), which then degrades the corresponding endogenous mRNA, thereby resulting in the modulation of gene expression. Notably, dsRNA has been reported to have anti-proliferative properties, which makes it possible also to envisage therapeutic applications (Aubel et al., Proc. Natl. Acad. Sci., USA 88:906 (1991)). For example, synthetic dsRNA has been shown to inhibit tumor growth in mice (Levy et al. Proc. Nat. Acad. Sci. USA, 62:357-361 (1969)), is active in the treatment of leukemic mice (Zeleznick et al., Proc. Soc. Exp. Biol. Med. 130:126-128 (1969)), and inhibits chemically induced tumorigenesis in mouse skin (Gelboin et al., Science 167:205-207 (1970)). Thus, in preferred embodiments, the invention provides for the use of antisense oligonucleotides in ADCs for the treatment of breast cancer. In other embodiments, the invention provides compositions and methods for initiating antisense oligonucleotide treatment, wherein dsRNA interferes with target cell expression of EGFR at the mRNA level. dsRNA, as used above, refers to naturally-occurring RNA, partially purified RNA, recombinantly produced RNA, synthetic RNA, as well as altered RNA that differs from naturally-occurring RNA by the inclusion of non-standard nucleotides, non-nucleotide material, nucleotide analogs (e.g. locked nucleic acid (LNA)), deoxyribonucleotides, and any combination thereof. RNA of the invention need only be sufficiently similar to natural RNA that it has the ability to mediate the antisense oligonucleotide-based modulation described herein.
Aptamers
The linkers of the invention may be used to conjugate an antibody to at least one aptamer. An aptamer is a nucleic acid molecule that has been selected from random pools based on its ability to bind other molecules. Like antibodies, aptamers can bind target molecules with extraordinary affinity and specificity. In many embodiments, aptamers assume complex, sequence-dependent, three-dimensional shapes that allow them to interact with a target protein, resulting in a tightly bound complex analogous to an antibody-antigen interaction, thereby interfering with the function of said protein. The particular capacity of aptamers to bind tightly and specifically to their target protein underlines their potential as targeted molecular therapies.
CpG Oligonucleotides
The linkers of the invention may be used to conjugate an antibody to at least one CpG oligonucleotide. Bacterial and viral DNA are known to be a strong activators of both the innate and specific immunity in humans. These immunologic characteristics have been associated with unmethylated CpG dinucleotide motifs found in bacterial DNA. Owing to the fact that these motifs are rare in humans, the human immune system has evolved the ability to recognize these motifs as an early indication of infection and subsequently initiate immune responses. Therefore, oligonucleotides containing this CpG motif can be exploited to initiate an antitumor immune response.
Ribozymes
The linkers of the invention may be used to conjugate an antibody to at least one ribozyme. Ribozymes are catalytic RNA molecules ranging from about 40 to 155 nucleotides in length. The ability of ribozymes to recognize and cut specific RNA molecules makes them potential candidates for therapeutics. A representative example includes angiozyme.
Radionuclide Agents (Radioactive Isotopes)
The linkers of the invention may be used to conjugate an antibody to at least one radionuclide agent. Radionuclide agents comprise agents that are characterized by an unstable nucleus that is capable of undergoing radioactive decay. The basis for successful radionuclide treatment depends on sufficient concentration and prolonged retention of the radionuclide by the cancer cell. Other factors to consider include the radionuclide half-life, the energy of the emitted particles, and the maximum range that the emitted particle can travel. In preferred embodiments, the therapeutic agent is a radionuclide selected from the group consisting of 111In, 177Lu, 212Bi, 213Bi, 211At, 62Cu, 64Cu, 67Cu, 90Y, 125I, 131I, 32P, 33P, 47Sc, 111Ag, 67Ga, 142Pr, 153Sm, 161Tb, 166Dy, 166Ho, 186Re, 188Re, 189Re, 212Pb, 223Ra, 225Ac, 59Fe, 75Se, 77As, 89Sr, 99Mo, 105Rh, 109Pd, 143Pr, 149Pm, 169Er, 194Ir, 198Au, 199Au, and 211Pb. Also preferred are radionuclides that substantially decay with Auger-emitting particles. For example, Co-58, Ga-67, Br-80m, Tc-99m, Rh-103m, Pt-109, In-111 1, Sb-119, 1-125, Ho-161, Os-189m and Ir-192. Decay energies of useful beta-particle-emitting nuclides are preferably Dy-152, At-211, Bi-212, Ra-223, Rn-219, Po-215, Bi-21 1, Ac-225, Fr-221, At-217, Bi-213 and Fm-255. Decay energies of useful alpha-particle-emitting radionuclides are preferably 2,000-10,000 keV, more preferably 3,000-8,000 keV, and most preferably 4,000-7,000 keV. Additional potential radioisotopes of use include 11C, 13N, 150, 75Br, 198Au, 95Ru, 97Ru, 103Ru, 105Ru, 107Hg, 203Hg, 121mTe, 122mTe, 125mTe, 165Tm, 167Tm, 168Tm, 197Pt, 109Pd, 105Rh, 142Pr, 143Pr, 161Tb, 166Ho, 199Au, 57Co, 58Co, 51Cr, 59Fe, 75Se, 201T1, 225Ac, 76Br, 169Yb, and the like.
Radiosensitizers
The linkers of the invention may be used to conjugate an antibody to at least one radiosensitizer. The term “radiosensitizer,” as used herein, is defined as a molecule, preferably a low molecular weight molecule, administered to animals in therapeutically effective amounts to increase the sensitivity of the cells to be radiosensitized to electromagnetic radiation and/or to promote the treatment of diseases that are treatable with electromagnetic radiation. Radiosensitizers are agents that make cancer cells more sensitive to radiation therapy, while typically having much less of an effect on normal cells. Thus, the radiosensitizer can be used in combination with a radiolabeled antibody or ADC. The addition of the radiosensitizer can result in enhanced efficacy when compared to treatment with the radiolabeled antibody or antibody fragment alone. Radiosensitizers are described in D. M. Goldberg (ed.), Cancer Therapy with Radiolabeled Antibodies, CRC Press (1995). Examples of radiosensitizers include gemcitabine, 5-fluorouracil, taxane, and cisplatin.
Radiosensitizers may be activated by the electromagnetic radiation of X-rays. Representative examples of X-ray activated radiosensitizers include, but are not limited to, the following: metronidazole, misonidazole, desmethylmisonidazole, pimonidazole, etanidazole, nimorazole, mitomycin C, RSU 1069, SR 4233, E09, RB 6145, nicotinamide, 5-bromodeoxyuridine (BUdR), 5-iododeoxyuridine (IUdR), bromodeoxycytidine, fluorodeoxyuridine (FUdR), hydroxyurea, cisplatin, and therapeutically effective analogs and derivatives of the same. Alternatively, radiosensitizers may be activated using photodynamic therapy (PDT). Representative examples of photodynamic radiosensitizers include, but are not limited to, hematoporphyrin derivatives, Photofrin(r), benzoporphyrin derivatives, NPe6, tin etioporphyrin (SnET2), pheoborbide a, bacteriochlorophyll a, naphthalocyanines, phthalocyanines, zinc phthalocyanine, and therapeutically effective analogs and derivatives of the same.
Topoisomerase Inhibitors
The linkers of the invention may be used to conjugate an antibody to at least one topoisomerase inhibitor. Topoisomerase inhibitors are chemotherapy agents designed to interfere with the action of topoisomerase enzymes (topoisomerase I and II), which are enzymes that control the changes in DNA structure by catalyzing then breaking and rejoining of the phosphodiester backbone of DNA strands during the normal cell cycle. Representative examples of DNA topoisomerase I inhibitors include, but are not limited to, camptothecins and its derivatives irinotecan (CPT-11, Camptosar, Pfizer, Inc.) and topotecan (Hycamtin, GlaxoSmithKline Pharmaceuticals). Representative examples of DNA topoisomerase II inhibitors include, but are not limited to, amsacrine, daunorubicin, doxotrubicin, epipodophyllotoxins, ellipticines, epirubicin, etoposide, razoxane, and teniposide.
Tyrosine Kinase Inhibitors
The linkers of the invention may be used to conjugate an antibody to at least one tyrosine kinase inhibitor. Tyrosine kinases are enzymes within the cell that function to attach phosphate groups to the amino acid tyrosine. By blocking the ability of protein tyrosine kinases to function, tumor growth may be inhibited. Examples of tyrosine kinases that may be used on the ADCs of the invention include, but are not limited to, Axitinib, Bosutinib, Cediranib, Dasatinib, Erlotinib, Gefitinib, Imatinib, Lapatinib, Lestaurtinib, Nilotinib, Semaxanib, Sunitinib, and Vandetanib.
Other Agents
Examples of other agents that may be used in the ADCs of the invention include, but are not limited to, abrin (e.g. abrin A chain), alpha toxin, Aleurites fordii proteins, amatoxin, crotin, curcin, dianthin proteins, diphtheria toxin (e.g. diphtheria A chain and nonbinding active fragments of diphtheria toxin), deoxyribonuclease (Dnase), gelonin, mitogellin, modeccin A chain, Momordica charantia inhibitor, neomycin, onconase, phenomycin, Phytolaca americana proteins (PAPI, PAPII, and PAP-S), pokeweed antiviral protein, Pseudomonas endotoxin, Pseudomonas exotoxin (e.g. exotoxin A chain (from Pseudomonas aeruginosa)), restrictocin, ricin A chain, ribonuclease (Rnase), Sapaonaria officinalis inhibitor, saporin, alpha-sarcin, Staphylococcal enterotoxin-A, tetanus toxin, cisplatin, carboplatin, and oxaliplatin (Eloxatin, Sanofi Aventis), proteasome inhibitors (e.g. PS-341 [bortezomib or Velcade]), HDAC inhibitors (vorinostat (Zolinza, Merck & Company, Inc.)), belinostat, entinostat, mocetinostat, and panobinostat), COX-2 inhibitors, substituted ureas, heat shock protein inhibitors (e.g. Geldanamycin and its numerous analogs), adrenocortical suppressants, and the tricothecenes. (See, for example, WO 93/21232). Other agents also include asparaginase (Espar, Lundbeck Inc.), hydroxyurea, levamisole, mitotane (Lysodren, Bristol-Myers Squibb), and tretinoin (Renova, Valeant Pharmaceuticals Inc.).
It should be noted that the aforementioned groups of drug moieties that may be used in the ADCs of the invention are not exclusive, in that certain examples of drugs may be found in more than one category, e.g., ansamitocins are both mitotic inhibitors and antitumor antibiotics.
All stereoisomers of the above drug moieties are contemplated for the compounds of the invention, i.e. any combination of R and S configurations at the chiral carbons of D.
A “detectable moiety” or a “marker” refers to a composition that is detectable by spectroscopic, photochemical, biochemical, immunochemical, radioactive or chemical means. For example, a useful label includes 32P, 35S, fluorescent dyes, electron-dense reagents, enzymes (e.g., enzymes that are generally used in ELISA), biotin-streptavidin, dioxigenin, hapten, and proteins for which antisera or monoclonal antibodies are available, or nucleic acid molecules with a sequence complementary to a target. The detectable moiety often generates a measurable signal, e.g., a radioactive signal, a color signal or a fluorescent signal, which is usable to quantify an amount of the detectable moiety that binds in the sample. Quantification of the signal may be accomplished by, for example, scintillation counting, density gauge, flow cell analysis, ELISA, or direct analysis by mass spectroscopy of circular or subsequently digested peptides (one or more peptides may be assayed). Those skilled in the art are familiar with techniques and detection means for a label compound of interest. These techniques and methods are conventional and well known in the art.
The probe for detection refers to (i) a material capable of providing a detectable signal, (ii) a material capable of interacting with a first probe or a second probe to change a detectable signal provided by the first probe or the second probe, such as fluorescence resonance energy transfer (FRET), (iii) a material capable of stabilizing an interaction with an antigen or a ligand or increasing binding affinity, (iv) a material capable of affecting electric mobility or cell-invasive action by physical parameters such as charge, hydrophobicity, etc., or (v) a material capable of adjusting ligand affinity, antigen-antibody binding or ion complex formation.
In certain embodiments, FRET techniques may be employed to distinguish intact molecules from molecules that have been exposed to conditions that activate the triggering group, e.g., by attaching a donor chromophore to the central Ar ring and an acceptor chromophore as Q.
In some embodiments, provided herein are uses for the disclosed compounds as an imaging agent (e.g., a fluorophore or a chelator), such as fluorescein, rhodamine, lanthanide phosphors, and their derivatives thereof. Examples of fluorophores include, but are not limited to, fluorescein isothiocyanate (FITC) (e.g., 5-FITC), fluorescein amidite (FAM) (e.g., 5-FAM), eosin, carboxyfluorescein, erythrosine, Alexa Fluor® (e.g., Alexa 350, 405, 430, 488, 500, 514, 532, 546, 555, 568, 594, 610, 633, 647, 660, 680, 700, or 750), carboxytetramethylrhodamine (TAMRA) (e.g., 5-TAMRA), tetramethylrhodamine (TMR), and sulforhodamine (SR) (e.g., SR101). Examples of chelators include, but are not limited to, 1,4,7,10-tetraazacyclododecane-N,N′,N″,N″′-tetraacetic acid (DOTA), 1,4,7-triazacyclononane-1,4,7-triacetic acid (NOTA), 1,4,7-triazacyclononane, 1-glutaric acid-4,7-acetic acid (NODAGA), diethylenetriaminepentaacetic acid (DTPA), and 1,2-bis(o-aminophenoxy) ethane-N,N,N′,N′-tetraacetic acid) (BAPTA).
Antibodies
The antibody of an ADC may be any antibody that binds, typically but not necessarily specifically, an antigen expressed on the surface of a target cell of interest. The antigen need not, but in some embodiments, is capable of internalizing an ADC bound thereto into the cell. Target cells of interest may include cells where induction of apoptosis is desirable. Target antigens may be any protein, glycoprotein, polysaccharide, lipoprotein, etc. expressed on the target cell of interest, but will typically be proteins that are either uniquely expressed on the target cell and not on normal or healthy cells, or that are over-expressed on the target cell as compared to normal or healthy cells, such that the ADCs selectively target specific cells of interest, such as, for example, tumor cells. As will be appreciated by skilled artisans, the specific antigen, and hence antibody, selected will depend upon the identity of the desired target cell of interest. In specific embodiments, the antibody of the ADC is an antibody suitable for administration to humans.
Antibodies (Abs) and immunoglobulins (Igs) are glycoproteins having the same structural characteristics. While antibodies exhibit binding specificity to a specific target, immunoglobulins include both antibodies and other antibody-like molecules which lack target specificity. Native antibodies and immunoglobulins are usually heterotetrameric glycoproteins of about 150,000 daltons, composed of two identical light (L) chains and two identical heavy (H) chains. Each heavy chain has at one end a variable domain (VH) followed by a number of constant domains. Each light chain has a variable domain at one end (VL) and a constant domain at its other end.
References to “VH” refer to the variable region of an immunoglobulin heavy chain of an antibody, including the heavy chain of an Fv, scFv, or Fab. References to “VL” refer to the variable region of an immunoglobulin light chain, including the light chain of an Fv, scFv, dsFv or Fab.
The term “antibody” herein is used in the broadest sense and refers to an immunoglobulin molecule that specifically binds to, or is immunologically reactive with, a particular antigen, and includes polyclonal, monoclonal, genetically engineered and otherwise modified forms of antibodies, including but not limited to murine, chimeric antibodies, humanized antibodies, heteroconjugate antibodies (e.g., bispecific antibodies, diabodies, triabodies, and tetrabodies), and antigen binding fragments of antibodies, including e.g., Fab′, F(ab′)2, Fab, Fv, rIgG, and scFv fragments. The term “scFv” refers to a single chain Fv antibody in which the variable domains of the heavy chain and the light chain from a traditional antibody have been joined to form one chain.
Antibodies may be murine, human, humanized, chimeric, or derived from other species. An antibody is a protein generated by the immune system that is capable of recognizing and binding to a specific antigen. (Janeway, C., Travers, P., Walport, M., Shlomchik (2001) Immuno Biology, 5th Ed., Garland Publishing, New York). A target antigen generally has numerous binding sites, also called epitopes, recognized by CDRs on multiple antibodies. Each antibody that specifically binds to a different epitope has a different structure. Thus, one antigen may have more than one corresponding antibody. An antibody includes a full-length immunoglobulin molecule or an immunologically active portion of a full-length immunoglobulin molecule, i.e., a molecule that contains an antigen binding site that immunospecifically binds an antigen of a target of interest or part thereof, such targets including but not limited to, cancer cell or cells that produce autoimmune antibodies associated with an autoimmune disease. The immunoglobulin disclosed herein can be of any type (e.g., IgG, IgE, IgM, IgD, and IgA), class (e.g., IgG1, IgG2, IgG3, IgG4, IgA1 and IgA2) or subclass of immunoglobulin molecule. The immunoglobulins can be derived from any species. In one aspect, however, the immunoglobulin is of human, murine, or rabbit origin.
The term “antibody fragment” refers to a portion of a full-length antibody, generally the target binding or variable region. Examples of antibody fragments include Fab, Fab′, F(ab′)2 and Fv fragments. An “Fv” fragment is the minimum antibody fragment which contains a complete target recognition and binding site. This region consists of a dimer of one heavy and one light chain variable domain in a tight, non-covalent association (VH-VL dimer). It is in this configuration that the three CDRs of each variable domain interact to define a target binding site on the surface of the VH-VL dimer. Often, the six CDRs confer target binding specificity to the antibody. However, in some instances even a single variable domain (or half of an Fv comprising only three CDRs specific for a target) can have the ability to recognize and bind target. “Single-chain Fv” or “scFv” antibody fragments comprise the VH and VL domains of an antibody in a single polypeptide chain. Generally, the Fv polypeptide further comprises a polypeptide linker between the VH and VL domains which enables the scFv to form the desired structure for target binding. “Single domain antibodies” are composed of a single VH or VL domains which exhibit sufficient affinity to the target. In a specific embodiment, the single domain antibody is a camelized antibody (see, e.g., Riechmann, 1999, Journal of Immunological Methods 231:25-38).
The Fab fragment contains the constant domain of the light chain and the first constant domain (CHI) of the heavy chain. Fab′ fragments differ from Fab fragments by the addition of a few residues at the carboxyl terminus of the heavy chain CHI domain including one or more cysteines from the antibody hinge region. F(ab′) fragments are produced by cleavage of the disulfide bond at the hinge cysteines of the F(ab′)2 pepsin digestion product. Additional chemical couplings of antibody fragments are known to those of ordinary skill in the art.
Both the light chain and the heavy chain variable domains have complementarity determining regions (CDRs), also known as hypervariable regions. The more highly conserved portions of variable domains are called the framework (FR). As is known in the art, the amino acid position/boundary delineating a hypervariable region of an antibody can vary, depending on the context and the various definitions known in the art. Some positions within a variable domain may be viewed as hybrid hypervariable positions in that these positions can be deemed to be within a hypervariable region under one set of criteria while being deemed to be outside a hypervariable region under a different set of criteria. One or more of these positions can also be found in extended hypervariable regions. The CDRs in each chain are held together in close proximity by the FR regions and, with the CDRs from the other chain, contribute to the formation of the target binding site of antibodies (see Kabat et al., Sequences of Proteins of Immunological Interest (National Institute of Health, Bethesda, Md. 1987). As used herein, numbering of immunoglobulin amino acid residues is done according to the immunoglobulin amino acid residue numbering system of Kabat et al., unless otherwise indicated.
In certain embodiments, the antibodies of the ADCs of the present disclosure are monoclonal antibodies. The term “monoclonal antibody” (mAb) refers to an antibody that is derived from a single copy or clone, including e.g., any eukaryotic, prokaryotic, or phage clone, and not the method by which it is produced. Preferably, a monoclonal antibody of the disclosure exists in a homogeneous or substantially homogeneous population. Monoclonal antibody includes both intact molecules, as well as, antibody fragments (such as, for example, Fab and F(ab′)2 fragments), which are capable of specifically binding to a protein. Fab and F(ab′)2 fragments lack the Fc fragment of intact antibody, clear more rapidly from the circulation of the animal, and may have less non-specific tissue binding than an intact antibody (Wahl et al., 1983, J. Nucl. Med 24:316). Monoclonal antibodies useful with the present disclosure can be prepared using a wide variety of techniques known in the art including the use of hybridoma, recombinant, and phage display technologies, or a combination thereof. The antibodies of the disclosure include chimeric, primatized, humanized, or human antibodies.
While in most instances antibodies are composed of only the genetically-encoded amino acids, in some embodiments non-encoded amino acids may be incorporated at specific. Examples of non-encoded amino acids that may be incorporated into antibodies for use in controlling stoichiometry and attachment location, as well as methods for making such modified antibodies are discussed in Tian et al., 2014, Proc Nat'l Acad Sci USA 111(5):1766-1771 and Axup et al., 2012, Proc Nat'l Acad Sci USA 109(40):16101-16106 the entire contents of which are incorporated herein by reference.
In certain embodiments, the antibody of the ADCs described herein is a chimeric antibody. The term “chimeric” antibody as used herein refers to an antibody having variable sequences derived from a non-human immunoglobulin, such as rat or mouse antibody, and human immunoglobulin constant regions, typically chosen from a human immunoglobulin template. Methods for producing chimeric antibodies are known in the art. See, e.g., Morrison, 1985, Science 229(4719):1202-7; Oi et al., 1986, BioTechniques 4:214-221; Gillies et al., 1985, J. Immunol. Methods 125:191-202; U.S. Pat. Nos. 5,807,715; 4,816,567; and 4,816397, which are incorporated herein by reference in their entireties.
In certain embodiments, the antibody of the ADCs described herein is a humanized antibody. “Humanized” forms of non-human (e.g., murine) antibodies are chimeric immunoglobulins, immunoglobulin chains or fragments thereof (such as Fv, Fab, Fab′, F(ab′)2 or other target-binding subdomains of antibodies), which contain minimal sequences derived from non-human immunoglobulin. In general, the humanized antibody will comprise substantially all of at least one, and typically two, variable domains, in which all or substantially all of the CDR regions correspond to those of a non-human immunoglobulin and all or substantially all of the FR regions are those of a human immunoglobulin sequence. The humanized antibody can also comprise at least a portion of an immunoglobulin constant region (Fc), typically that of a human immunoglobulin consensus sequence. Methods of antibody humanization are known in the art. See, e.g., Riechmann et al., 1988, Nature 332:323-7; U.S. Pat. Nos. 5,530,101; 5,585,089; 5,693,761; 5,693,762; and U.S. Pat. No. 6,180,370 to Queen et al.; EP239400; PCT publication WO 91/09967; U.S. Pat. No. 5,225,539; EP592106; EP519596; Padlan, 1991, Mol. Immunol., 28:489-498; Studnicka et al., 1994, Prot. Eng. 7:805-814; Roguska et al., 1994, Proc. Natl. Acad Sci. USA 91:969-973; and U.S. Pat. No. 5,565,332, all of which are hereby incorporated by reference in their entireties.
In certain embodiments, the antibody of the ADCs described herein is a human antibody. Completely “human” antibodies can be desirable for therapeutic treatment of human patients. As used herein, “human antibodies” include antibodies having the amino acid sequence of a human immunoglobulin and include antibodies isolated from human immunoglobulin libraries or from animals transgenic for one or more human immunoglobulin and that do not express endogenous immunoglobulins. Human antibodies can be made by a variety of methods known in the art including phage display methods using antibody libraries derived from human immunoglobulin sequences. See U.S. Pat. Nos. 4,444,887 4,716,111, 6,114,598, 6,207,418, 6,235,883, 7,227,002, 8,809,151 and U.S. Published Application No. 2013/189218, the contents of which are incorporated herein by reference in their entireties. Human antibodies can also be produced using transgenic mice which are incapable of expressing functional endogenous immunoglobulins, but which can express human immunoglobulin genes. See, e.g., U.S. Pat. Nos. 5,413,923; 5,625,126; 5,633,425; 5,569,825; 5,661,016; 5,545,806; 5,814,318; 5,885,793; 5,916,771; 5,939,598; 7,723,270; 8,809,051 and U.S. Published Application No. 2013/117871, which are incorporated by reference herein in their entireties. In addition, companies such as Medarex (Princeton, N.J.), Astellas Pharma (Deerfield, Ill.), and Regeneron (Tarrytown, N.Y.) can be engaged to provide human antibodies directed against a selected antigen using technology similar to that described above. Completely human antibodies that recognize a selected epitope can be generated using a technique referred to as “guided selection.” In this approach a selected non-human monoclonal antibody, e.g., a mouse antibody, is used to guide the selection of a completely human antibody recognizing the same epitope (Jespers et al., 1988, Biotechnology 12:899-903).
In certain embodiments, the antibody of the ADCs described herein is a primatized antibody. The term “primatized antibody” refers to an antibody comprising monkey variable regions and human constant regions. Methods for producing primatized antibodies are known in the art. See, e.g., U.S. Pat. Nos. 5,658,570; 5,681,722; and 5,693,780, which are incorporated herein by reference in their entireties.
In certain embodiments, the antibody of the ADCs described herein is a bispecific antibody or a dual variable domain antibody (DVD). Bispecific and DVD antibodies are monoclonal, often human or humanized, antibodies that have binding specificities for at least two different antigens. DVDs are described, for example, in U.S. Pat. No. 7,612,181, the disclosure of which is incorporated herein by reference.
In certain embodiments, the antibody of the ADCs described herein is a derivatized antibody. For example, but not by way of limitation, derivatized antibodies are typically modified by glycosylation, acetylation, pegylation, phosphorylation, amidation, derivatization by known protecting/blocking groups, proteolytic cleavage, linkage to a cellular ligand or other protein, etc. Any of numerous chemical modifications can be carried out by known techniques, including, but not limited to, specific chemical cleavage, acetylation, formylation, metabolic synthesis of tunicamycin, etc. Additionally, the derivative can contain one or more non-natural amino acids, e.g., using ambrx technology (see, e.g., Wolfson, 2006, Chem. Biol. 13(10):1011-2).
In certain embodiments, the antibody of the ADCs described herein has a sequence that has been modified to alter at least one constant region-mediated biological effector function relative to the corresponding wild type sequence. For example, in some embodiments, the antibody can be modified to reduce at least one constant region-mediated biological effector function relative to an unmodified antibody, e.g., reduced binding to the Fc receptor (FcR). FcR binding can be reduced by mutating the immunoglobulin constant region segment of the antibody at particular regions necessary for FcR interactions (see, e.g., Canfield and Morrison, 1991, J. Exp. Med 173:1483-1491; and Lund et al., 1991, J. Immunol. 147:2657-2662).
In certain embodiments, the antibody of the ADCs described herein is modified to acquire or improve at least one constant region-mediated biological effector function relative to an unmodified antibody, e.g., to enhance FcγR interactions (see, e.g., US 2006/0134709). For example, an antibody with a constant region that binds FcγRIIA, FcγRIIB and/or FcγRIIIA with greater affinity than the corresponding wild type constant region can be produced according to the methods described herein.
In certain specific embodiments, the antibody of the ADCs described herein is an antibody that binds tumor cells, such as an antibody against a cell surface receptor or a tumor-associated antigen (TAA). In attempts to discover effective cellular targets for cancer diagnosis and therapy, researchers have sought to identify transmembrane or otherwise tumor-associated polypeptides that are specifically expressed on the surface of one or more particular type(s) of cancer cell as compared to on one or more normal non-cancerous cell(s). Often, such tumor-associated polypeptides are more abundantly expressed on the surface of the cancer cells as compared to the surface of the no-cancerous cells. Such cell surface receptor and tumor-associated antigens are known in the art, and can prepared for use in generating antibodies using methods and information which are well known in the art.
Exemplary Cell Surface Receptors and TAAs
Examples of cell surface receptor and TAAs to which the antibody of the ADCs described herein may be targeted include, but are not limited to, the various receptors and TAAs listed below in Table 1. For convenience, information relating to these antigens, all of which are known in the art, is listed below and includes names, alternative names, Genbank accession numbers and primary reference(s), following nucleic acid and protein sequence identification conventions of the National Center for Biotechnology Information (NCBI). Nucleic acid and protein sequences corresponding to the listed cell surface receptors and TAAs are available in public databases such as GenBank.
Exemplary Antibodies
Exemplary antibodies to be used with ADCs of the disclosure include but are not limited to 3F8 (GD2), Abagovomab (CA-125 (imitation)), Adecatumiumab (EpCAM), Afutuzumab (CD20), Alacizumiab pegol (VEGFR2), ALD518 (IL-6), Alemtuzumnab (CD52), Altumomab pentetate (CEA), Amatuximab (Mesothelin), Anatumomnab mafenatox (TAG-72), Apolizumiab (HLA-DR), Arcitunmomab (CEA), Bavituximiab (Phosphatidylserine), Bectumomiab (CD22), Belimunmab (BAFF), Besilesomab (CEA-related antigen), Bevacizunmab (VEGF-A), Bivatuzunmab mertansine (CD44 v6), Blinatumomab (CD19), Brentuxinmab vedotin ((CD30 (TNFRSF8)), Cantuzunmab mertansine (Mucin CanAg), Cantuzunmab ravtansine (MUC1), Capromiab pendetide (Prostatic carcinoma cells), Carluniab (MCP-1), Catumiaxomab (EpCAM, CD3), CC49 (Tag-72), cBR96-DOX ADC (Lewis-Y antigen), Cetuximiab (EGFR), Citatuzunmab bogatox (EpCAM), Cixutumumiab (IGF-1 receptor), Clivatuzumiab tetraxetan(MUC1), Conatumumab (TRAIL-E2), Dacetuzuniab (CD40), Dalotuzuniab (Insulin-like growth factor 1 receptor), Deratuniuniab ((CD38 (cyclic ADP ribose hydrolase)), Demcizumiab (DLL4), Denosumab (RANKL), Detumomab (B-lymphoma cell), Drozitumab (DR5), Dusigitumab (ILGF2), Ecromeximab (D3 ganglioside), Eculizumab (C5), Edrecolomab (EpCAM), Elotuzumab (SLAMF7), Elsilimomab (IL-6), Enavatuzumab (TWEAK receptor), Enoticumab (DLL4), Ensituximab (5AC), Epitumomab cituxetan (Episialin), Epratuzumab (CD22), Ertumaxomab ((HER2/neu, CD3)), Etancizumab (Integrin αvβ3), Farletuzumab (Folate receptor 1), FBTA05 (CD20), Ficlatuzumab (HGF), Figitumumab (IGF-1 receptor), Flanvotumab ((TYRP1 (glycoprotein 75)), Fresolimumab (TGF-1), Galiximab (CD80), Ganitumab (IGF-I), Gemtuzumab ozogamicin (CD33), Girentuximab ((Carbonic anhydrase 9 (CA-IX)), Glembatumumab vedotin (GPNMB), Ibritumomab tiuxetan (CD20) Icrucumab (VEGFR-1), Igovomab (CA-125), IMAB362 (CLDN18.2), Imgatuzumab (EGFR), Indatuximab ravtansine (SDC1), Intetumumab (CD51), Inotuzumab ozogamicin (CD22), Ipilimumab (CD152), Iratumumab ((CD30 (TNFRSF8)), Labetuzumab (CEA), Lambrolizumab (PDCD1), Lexatumumab (TRAIL-R2), Lintuzumab (CD33), Lorvotuzumab mertansine (CD56), Lucatumumab (CD40), Lumiliximab ((CD23 (IgE receptor)), Mapatumumab (TRAIL-R1), Margetuximab (ch4DS), Matuzumab (EGFR), Milatuzumab (CD74), Mitumomab (GD3 ganglioside), Mogamulizumab (CCR4), Moxetumomab pasudotox (CD22), Nacolomab tafenatox (C2-42 antigen), Naptumomab estafenatox (5T4), Narnatumab (RON), Natalizumab (integrin α4), Necitumumab (EGFR), Nesvacumab (angiopoietin 2), Nimotuzumab (EGFR), Nivolumab (IgG4), Ocaratuzumab (CD20), Ofatumumab (CD20), Olaratumab (PDGF-R a), Onartuzumab (Human scatter factor receptor kinase), Ontuxizumab (TEM1), Oportuzumab monato (EpCAM), Oregovomab (CA-125), Otlertuzumab (CD37), Panitumumab (EGFR) Pankomab (Tumor specific glycosylation of MUC1), Parsatuzumab (EGFL7), Patritumab (HER3), Pemtumomab (MUC1), Pertuzumab (HER2/neu), Pidilizumab (PD-1), Pinatuzumab vedotin (CD22), Pritumumab (Vimentin), Racotumomab (N-glycolylneuraminic acid), Radretumab (Fibronectin extra domain-B), Ramucirumab (VEGFR2), Rilotumumab (HGF), Rituximab (CD20), Robatumumab (IGF-1 receptor), Samalizumab (CD200), Satumomab pendetide (TAG-72), Seribantumab (ERBB3), Sibrotuzumab (FAP), SGN-CD19A (CD19), SGN-CD33A (CD33), Siltuximab (IL-6), Solitomab (EpCAM), Sonepcizumab (Sphingosine-1-phosphate), Tabalumb (BAFF), Tacatuzumab tetraxetan (Alpha-fetoprotein), Taplitumomab paptox (CD19), Tenatumomab (Tenascin C), Teprotumumab (CD221), TGN1412 (CD28), Ticilimumab (CTLA-4), Tigatuzumab (TRAIL-R2), TNX-650 (IL-13), Tovetumab (CD40a), Trastuzumab (HER2/neu), TRBS07 (GD2), Tremelimumab (CTLA-4), Tucotuzumab celmoleukin (EpCAM), Ublituximab (MS4A), Urelumab (4-1BB), Vandetanib (VEGF), Vantictumab (Frizzled receptor), Volociximab (integrin α5β1), Vorsetuzumab mafodotin (CD70), Votumumab (Tumor antigen CTAA16.88), Zalutumumab (EGFR), Zanolimumab (CD4), and Zatuximab (HER1).
Methods of Making Antibodies
The antibody of an ADC can be prepared by recombinant expression of immunoglobulin light and heavy chain genes in a host cell. For example, to express an antibody recombinantly, a host cell is transfected with one or more recombinant expression vectors carrying DNA fragments encoding the immunoglobulin light and heavy chains of the antibody such that the light and heavy chains are expressed in the host cell and, optionally, secreted into the medium in which the host cells are cultured, from which medium the antibodies can be recovered. Standard recombinant DNA methodologies are used to obtain antibody heavy and light chain genes, incorporate these genes into recombinant expression vectors and introduce the vectors into host cells, such as those described in Molecular Cloning; A Laboratory Manual, Second Edition (Sambrook, Fritsch and Maniatis (eds), Cold Spring Harbor, N.Y., 1989), Current Protocols in Molecular Biology (Ausubel, F. M. et al., eds., Greene Publishing Associates, 1989) and in U.S. Pat. No. 4,816,397.
In one embodiment, the Fc variant antibodies are similar to their wild-type equivalents but for changes in their Fc domains. To generate nucleic acids encoding such Fc variant antibodies, a DNA fragment encoding the Fc domain or a portion of the Fc domain of the wild-type antibody (referred to as the “wild-type Fc domain”) can be synthesized and used as a template for mutagenesis to generate an antibody as described herein using routine mutagenesis techniques; alternatively, a DNA fragment encoding the antibody can be directly synthesized.
Once DNA fragments encoding wild-type Fc domains are obtained, these DNA fragments can be further manipulated by standard recombinant DNA techniques, for example, to convert the constant region genes to full-length antibody chain genes. In these manipulations, a CH-encoding DNA fragment is operatively linked to another DNA fragment encoding another protein, such as an antibody variable region or a flexible linker. The term “operatively linked,” as used in this context, is intended to mean that the two DNA fragments are joined such that the amino acid sequences encoded by the two DNA fragments remain in-frame.
To express the Fc variant antibodies, DNAs encoding partial or full-length light and heavy chains, obtained as described above, are inserted into expression vectors such that the genes are operatively linked to transcriptional and translational control sequences. In this context, the term “operatively linked” is intended to mean that an antibody gene is ligated into a vector such that transcriptional and translational control sequences within the vector serve their intended function of regulating the transcription and translation of the antibody gene. The expression vector and expression control sequences are chosen to be compatible with the expression host cell used. A variant antibody light chain gene and the antibody heavy chain gene can be inserted into separate vectors or, more typically, both genes are inserted into the same expression vector.
The antibody genes are inserted into the expression vector by standard methods (e.g., ligation of complementary restriction sites on the antibody gene fragment and vector, or blunt end ligation if no restriction sites are present). Prior to insertion of the variant Fc domain sequences, the expression vector can already carry antibody variable region sequences. Additionally or alternatively, the recombinant expression vector can encode a signal peptide that facilitates secretion of the antibody chain from a host cell. The antibody chain gene can be cloned into the vector such that the signal peptide is linked in-frame to the amino terminus of the antibody chain gene. The signal peptide can be an immunoglobulin signal peptide or a heterologous signal peptide (i.e., a signal peptide from a non-immunoglobulin protein).
In addition to the antibody chain genes, the recombinant expression vectors carry regulatory sequences that control the expression of the antibody chain genes in a host cell. The term “regulatory sequence” is intended to include promoters, enhancers and other expression control elements (e.g., polyadenylation signals) that control the transcription or translation of the antibody chain genes. Such regulatory sequences are described, for example, in Goeddel, Gene Expression Technology: Methods in Enzymology 185 (Academic Press, San Diego, Calif., 1990). It will be appreciated by those skilled in the art that the design of the expression vector, including the selection of regulatory sequences may depend on such factors as the choice of the host cell to be transformed, the level of expression of protein desired, etc. Suitable regulatory sequences for mammalian host cell expression include viral elements that direct high levels of protein expression in mammalian cells, such as promoters and/or enhancers derived from cytomegalovirus (CMV) (such as the CMV promoter/enhancer), Simian Virus 40 (SV40) (such as the SV40 promoter/enhancer), adenovirus, (e.g., the adenovirus major late promoter (AdMLP)) and polyoma. For further description of viral regulatory elements, and sequences thereof, see, e.g., U.S. Pat. No. 5,168,062 by Stinski, U.S. Pat. No. 4,510,245 by Bell et al., and U.S. Pat. No. 4,968,615 by Schaffner et al.
In addition to the antibody chain genes and regulatory sequences, the recombinant expression vectors can carry additional sequences, such as sequences that regulate replication of the vector in host cells (e.g., origins of replication) and selectable marker genes. The selectable marker gene facilitates selection of host cells into which the vector has been introduced (see, e.g., U.S. Pat. Nos. 4,399,216, 4,634,665 and 5,179,017, all to Axel et al.). For example, typically the selectable marker gene confers resistance to drugs, such as G418, puromycin, blasticidin, hygromycin or methotrexate, on a host cell into which the vector has been introduced. Suitable selectable marker genes include the dihydrofolate reductase (DHFR) gene (for use in DHFR—host cells with methotrexate selection/amplification) and the neo gene (for G418 selection). For expression of the light and heavy chains, the expression vector(s) encoding the heavy and light chains is transfected into a host cell by standard techniques. The various forms of the term “transfection” are intended to encompass a wide variety of techniques commonly used for the introduction of exogenous DNA into a prokaryotic or eukaryotic host cell, e.g., electroporation, lipofection, calcium-phosphate precipitation, DEAE-dextran transfection, and the like.
It is possible to express the antibodies in either prokaryotic or eukaryotic host cells. In certain embodiments, expression of antibodies is performed in eukaryotic cells, e.g., mammalian host cells, for optimal secretion of a properly folded and immunologically active antibody.
Exemplary mammalian host cells for expressing the recombinant antibodies include Chinese Hamster Ovary (CHO cells) (including DHFR-CHO cells, described in Urlaub and Chasin, 1980, Proc. Natl. Acad. Sci. USA 77:4216-4220, used with a DHFR selectable marker, e.g., as described in Kaufman and Sharp, 1982, Mol. Biol. 159:601-621), NS0 myeloma cells, COS cells, 293 cells and SP2/0 cells. When recombinant expression vectors encoding antibody genes are introduced into mammalian host cells, the antibodies are produced by culturing the host cells for a period of time sufficient to allow for expression of the antibody in the host cells or secretion of the antibody into the culture medium in which the host cells are grown. Antibodies can be recovered from the culture medium using standard protein purification methods. Host cells can also be used to produce portions of intact antibodies, such as Fab fragments or scFv molecules.
In some embodiments, the antibody of an ADC can be a bifunctional antibody. Such antibodies, in which one heavy and one light chain are specific for one antigen and the other heavy and light chain are specific for a second antigen, can be produced by crosslinking an antibody to a second antibody by standard chemical crosslinking methods. Bifunctional antibodies can also be made by expressing a nucleic acid engineered to encode a bifunctional antibody.
In certain embodiments, dual specific antibodies, i.e. antibodies that bind one antigen and a second, unrelated antigen using the same binding site, can be produced by mutating amino acid residues in the light chain and/or heavy chain CDRs. Exemplary second antigens include a proinflammatory cytokine (such as, for example, lymphotoxin, interferon-γ, or interleukin-1). Dual specific antibodies can be produced, e.g., by mutating amino acid residues in the periphery of the antigen binding site (see, e.g., Bostrom et al., 2009, Science 323:1610-1614). Dual functional antibodies can be made by expressing a nucleic acid engineered to encode a dual specific antibody.
Antibodies can also be produced by chemical synthesis (e.g., by the methods described in Solid Phase Peptide Synthesis, 2nd ed., 1984 The Pierce Chemical Co., Rockford, Ill.). Antibodies can also be generated using a cell-free platform (see, e.g., Chu et al., Biochemia No. 2, 2001 (Roche Molecular Biologicals)).
Methods for recombinant expression of Fc fusion proteins are described in Flanagan et al., Methods in Molecular Biology, vol. 378: Monoclonal Antibodies: Methods and Protocols.
Once an antibody has been produced by recombinant expression, it can be purified by any method known in the art for purification of an immunoglobulin molecule, for example, by chromatography (e.g., ion exchange, affinity, particularly by affinity for antigen after Protein A or Protein G selection, and sizing column chromatography), centrifugation, differential solubility, or by any other standard technique for the purification of proteins.
Once isolated, an antibody can, if desired, be further purified, e.g., by high performance liquid chromatography (see, e.g., Fisher, Laboratory Techniques In Biochemistry And Molecular Biology (Work and Burdon, eds., Elsevier, 1980)), or by gel filtration chromatography on a Superdex™ 75 column (Pharmacia Biotech AB, Uppsala, Sweden).
In certain embodiments, provided herein are uses for the disclosed compounds in imaging compositions and as sensors.
The sensor may be a biosensor, a chemical sensor, or a molecular switch. Biosensors are capable of identifying the presence or the amount of a specific material by reacting specific materials (e.g., cancer cells, viruses, various chemicals, etc.) with bio-receptors (portions designed to be capable of adsorbing and reacting with biomaterials such as DNA, RNA, antibodies, enzyme proteins, cells, biological membranes, hormone receptors, etc.) having selection specificity, and performing measurement using a signal transducer (a device that converts reaction between the specific material and a biological receptor into an electrical signal using various methods), and may be utilized for medical, environmental, process industries, military (chemical warfare), research, food, etc. (see, e.g., Biosensors and Bioelectronics, 2016, 32-45; Pol. J. Environ. Stud. 2015, 19-25; Analytica Chimica Acta 568 (2006) 200-210; Biosensors and Bioelectronics 2017, 217-231; ACS Appl. Mater. Interfaces 2015, 7, 20190-20199; Journal of Coastal Life Medicine 2016; 4(3): 200-202; Artificial Cells, Blood Substitutes, and Biotechnology, 39: 281-288; Journal of Controlled Release 159 (2012) 154-163).
Chemical sensors quickly and accurately monitor specific materials in many fields such as clinical diagnosis, medical research, chemical material measurement, environmental measurement, etc., by a method of using electrical properties such as electricity, resistance, potential difference, etc., and optical properties such as color, fluorescence, etc., and includes a gas sensor (hydrogen, oxygen, carbon monoxide), an ion sensor (cation, anion, gas sensitive ion), a component sensor (vapor phase, liquid phase, luminescent component), a humidity sensor (relative humidity, absolute humidity, condensation), dust/soot sensor (floating dust, dirt dust, soot, turbidity), etc. (see, e.g., Chem. Soc. Rev., 2015, 44, 3358; Journal of the Korean Chemical Society, 2010, 451-459; Chem. Sci., 2015, 6, 1150-1158; KR 10-1549347; J. Phys. Chem. B 2016, 120, 7053-7061; ACS Appl. Mater. Interfaces 2015, 7, 704-712; J. Am. Chem. Soc. 2011, 133, 10960-10965; J. Am. Chem. Soc. 2012, 134, 20412-20420; Org. Lett. 2014, 16, 1680-1683; J. Org. Chem. 2013, 78, 702-705; J. Org. Chem. 2015, 80, 12129-12136; ACS Macro Lett. 2014, 3, 1191-1195; New J. Chem., 2012, 36, 386-393; Chem. Commun., 2010, 46, 6575-6577; 2013).
A molecular switch is a molecule that can be reversibly switched between two or more stable states. The molecules may be switched between states in response to environmental stimuli, such as changes in chemical environment (such as pH), light irradiation (for example, light of a particular wavelength), temperature, an electric current, microenvironment, or the presence of a ligand. In some cases, switching between states may be dependent on a combination of stimuli. The oldest forms of synthetic molecular switches are pH indicators, which display distinct colors as a function of pH. Synthetic molecular switches may be applied in molecular computers or responsive drug delivery systems. Molecular switches are also important in biology because many biological functions are based on them, for instance allosteric regulation and vision.
Such biosensors, chemical sensors, and molecular switches may further comprise additional photoreactive moieties, such as rhodamine, phenol red, orange azo dye, papa red, non-sulfonated cyanine, sulfonated cyanine, chemiluminescent fluoride sensor (1,2-dioxetane derivative), and D2A dyes (NIR fluorescence dyes). Alternatively, the photoreactive moiety may be selected from a compound having functional groups and structures similar to the following:
wherein:
Additional photoreactive moieties are known in the art. See, e.g., Org. Lett. 2014, 16, 1680-1683; J. Am. Chem. Soc. 2011, 133, 10960-10965; Dye Lasers, 3rd Ed. (Springer-Verlag, Berlin, 1990); J. Am. Chem. Soc. 2012, 134, 20412-20420).
Target-Oriented Treatments
The targeting moiety of the conjugate may be recognized by a cell, thereby providing a so-called target-oriented treatment.
In some embodiments, the conjugate comprises an active agent for use in a target-oriented treatment for treating an autoimmune disease. In some such embodiments, active agents is selected from: cyclosporine, cyclosporine A, mycophenylate mofetil, sirolimus, tacrolimus, etanercept, prednisone, azathioprine, methotrexate cyclophosphamide, aminocaproic acid, chloroquine, hydroxychloroquine, hydrocortisone, dexamethasone, chlororambucil, DHEA, danazol, bromocriptine, meloxicam, infliximab, etc.
In some embodiments, the compound comprises an active agent Q for use in a target-oriented treatment for treating an infectious disease. In some such embodiments, Q is selected from: beta-lactam series (penicillin G, penicillin V, cloxacillin, dicloxacillin, methicillin, nafcillin, oxacillin, ampicillin, amoxicillin, becampicillin, azlocillin, carbenicillin, mezlocillin, piperacillin, ticarcillin), aminoglycoside series (amikacin, gentamycin, kanamycin, neomycin, netilmicin, streptomycin, tobramycin), macrolide series (azithromycin, clarithromycin, erythromycin, lincomycin, clindamycin), tetracycline series (demeclocycline, doxycyline, minocycline, tetracycline), quinolone series (cinoxacin, nalidixic acid), fluoroquinolone series (ciprofloxacin, enoxacin, grepafloxacin, levofloxacin, lomefloxacin, norfloxacin, ofloxacin, sparfloxacin, trovafloxicin), polypeptide series (bacitracin, colistin, polymyxin B), sulfonamide series (sulfisoxazole, sulfamethoxazole, sulfadiazine, sulfamethizole, sulfacetamide), other antibiotics (trimethoprim, sylfamethazole, chloramphenicol, vancomycin, metronidazole, quinupristin, dalfopristin, rifampicin, spectinomycin, nitrofurantoin), general anti-viral agent (idoxuradine, vidarabine, acyclovir, famcicyclovir, pencicyclovir, valacyclovir, gancicyclovir, foscarnet, ribavirin, amantadine, rimantadine, cidofovir, Antisense oligonucleotides, Immunoglobumins, interfeones), HIV infection therapeutic agent (tenofovir, emtricitabine, zidovudine, didanosine, zalcitabine, stavudine, lamivudine, nevirapine, delaviridine, saquinavir, ritonavir, indinavir, nelfinavir), etc.
In some embodiments, the compounds and conjugates disclosed herein comprise an active agent Q for use in a method for delivering an active agent to a cell for treating a tumor, wherein the targeting moiety is selected to bind with a target cell (i.e., a cancer cell). In particular, the present compounds, conjugates, and compositions may be useful for inhibiting abnormal cell growth or treating a proliferative disorder in a mammal (e.g., a human), such as where the target cell is a cancer cell and the targeting moiety is selected to bind to molecule associated with the cancer cell (and not associated with healthy cells, or at least preferentially associated with tumor cells rather than healthy cells).
In some such embodiments, the active agent is selected from: a cytotoxic or immunomodulatory agent, an anti-cancer agent, an anti-tublin agent, a cytotoxic agent, etc. Preferably, the cytotoxic or immunomodulatory agent includes an anti-tubulin agent, auristatin, a DNA minor groove binder, a DNA transcription inhibitor, an alkylating agent, anthracycline, antibitiotic, antifolate, antimetabolite, a calmodulin inhibitor, a chemotherapy sensitizer, duocarmycin, etoposide, fluoridated pyrimidine, ionophore, lexitropsin, maytansinoid, nitrosourea, platinol, a pore-forming compound, purine antimetabolite, puromycin, radiation sensitizer, rapamycin, steroid, taxane, topoisomerase inhibitor, vinca alkaloid, etc.; the anti-cancer agent includes methotrexate, taxol, L-asparaginase, mercaptopurine, thioguanine, hydroxyurea, cytarabine, cyclophosphamide, ifosfamide, nitrosoureas, cisplatin, carboplatin, mitomycin, dacarbazine, proocarbizine, topotecan, nitrogen mustards, cytoxan, etoposide, 5-fluorouracil, BCNU, irinotecan, camptothecins, bleomycin, doxorubicin, idaribicin, daunorubicin, dactinomycin, plicamycin, mitoxantrone, asparaginase, vinblastine, vincristine, vinorelbine, paclitaxel, docetaxel, etc.; the anti-tublin agent includes taxane (e.g., paclitaxel, docetaxel), T67, vinca alkyloid (e.g., vincristine, vinblastine, vindesine, vinorelbine), a baccatin derivative, a taxane derivative, epothiolone (e.g., epothilone A, epothilone B), nocodazole, colchicine, colcimid, estramustine, crytophycins, cemadotin, maytansinoids, combrestatins, discodermolide, eleutherobin, an auristatin derivative (AFP, MMAF, MMAE), etc.; the cytotoxic agent includes androgen, anthramycin (AMC), asparaginase, 5-azacytidine, azathioprine, bleomycin, busulfan, buthionine sulfoximine, calicheamicin, calicheamicin derivative, camptothecin, carboplatin, carmustine (BSNU), CC-1065, chlorambucin, cisplatin, colchicine, cyclophosphamide, cytarabine, cytidine arabinoside, cytochalasin B, dacarbazine, dactinomycin (actinomycin), daunorubicin, decarbazine, DM1, DM4, docetaxel, doxorubicin, etoposide, estrogen, 5-fluordeoxyuridine, 5-fluorouracil, gemcitabine, gramicidin D, hydroxyurea, idaribicin, ifosfamide, irinotecan, lomustine (CCNU), maytansine, mechlorethamine, melphalan, 6-merceptopurine, methotrexate, mithramycin, mitomycin C, mitoxantrone, nitroimidazole, paclitaxel, palytoxin, plicamycin, procarbizine, rhizoxin, streptozotocin, tenoposide, 6-thioguanine, thioTEPA, topotecan, vinblastine, vincristine, vinorelbine, VP-16, VM-26; DNA minor groove binder (e.g., enediyne, lexitropsin, CBI compound), duocarmycin, taxane (e.g., paclitaxel, docetaxel), puromycins, vinca alkaloids, CC-1065, SN-38, topotecan, morpholino-doxorubicin, rhizoxin, cyanomorpholino-doxorubicin, echinomycin, combretastatin, netropsin, epothilone A, epothilone B, estramustine, cryptophycins, cemadotin, maytansinoids, discodermolide, eleutherobin, mitoxantrone, etc.
Cellular Proliferation and Apoptosis
The compounds and conjugates disclosed herein may be used in methods to induce apoptosis in cells.
Dysregulated apoptosis has been implicated in a variety of diseases, including, for example, autoimmune disorders (e.g., systemic lupus erythematosus, rheumatoid arthritis, graft-versus-host disease, myasthenia gravis, or Sjögren's syndrome), chronic inflammatory conditions (e.g., psoriasis, asthma or Crohn's disease), hyperproliferative disorders (e.g., breast cancer, lung cancer), viral infections (e.g., herpes, papilloma, or HIV), and other conditions, such as osteoarthritis and atherosclerosis. The compounds, conjugates, and compositions described herein may be used to treat or ameliorate any of these diseases. Such treatments generally involve administering to a subject suffering from the disease an amount of a compound, conjugate, or composition described herein sufficient to provide therapeutic benefit. The identity of the antibody of the compound, conjugate, or composition administered will depend upon the disease being treated—thus the antibody should bind a cell-surface antigen expressed in the cell type where inhibition would be beneficial. The therapeutic benefit achieved will also depend upon the specific disease being treated. In certain instances, the compounds and compositions disclosed herein may treat or ameliorate the disease itself, or symptoms of the disease, when administered as monotherapy. In other instances, the compounds and compositions disclosed herein may be part of an overall treatment regimen including other agents that, together with the inhibitor or the compounds and compositions disclosed herein, treat or ameliorate the disease being treated, or symptoms of the disease. Agents useful to treat or ameliorate specific diseases that may be administered adjunctive to, or with, the compounds and compositions disclosed herein will be apparent to those of skill in the art.
Although absolute cure is always desirable in any therapeutic regimen, achieving a cure is not required to provide therapeutic benefit. Therapeutic benefit may include halting or slowing the progression of the disease, regressing the disease without curing, and/or ameliorating or slowing the progression of symptoms of the disease. Prolonged survival as compared to statistical averages and/or improved quality of life may also be considered therapeutic benefit.
One particular class of diseases that involve dysregulated apoptosis and that are significant health burden world-wide are cancers. In a specific embodiment, the compounds and compositions disclosed herein may be used to treat cancers. The cancer may be, for example, solid tumors or hematological tumors. Cancers that may be treated with the compounds and compositions disclosed herein include, but are not limited to bladder cancer, brain cancer, breast cancer, bone marrow cancer, cervical cancer, chronic lymphocytic leukemia, colorectal cancer, esophageal cancer, hepatocellular cancer, lymphoblastic leukemia, follicular lymphoma, lymphoid malignancies of T-cell or B-cell origin, melanoma, myelogenous leukemia, myeloma, oral cancer, ovarian cancer, non-small cell lung cancer, chronic lymphocytic leukemia, myeloma, prostate cancer, small cell lung cancer and spleen cancer. The compounds and compositions disclosed herein may be especially beneficial in the treatment of cancers because the antibody can be used to target the tumor cell specifically, thereby potentially avoiding or ameliorating undesirable side-effects and/or toxicities that may be associated with systemic administration of unconjugated inhibitors. One embodiment pertains to a method of treating a disease involving dysregulated intrinsic apoptosis, comprising administering to a subject having a disease involving dysregulated apotosis an amount of a compound and composition disclosed herein effective to provide therapeutic benefit, wherein the ligand of the compounds and compositions disclosed herein binds a cell surface receptor on a cell whose intrinsic apoptosis is dysregulated. One embodiment pertains to a method of treating cancer, comprising administering to a subject having cancer a compound and composition disclosed herein, wherein the ligand is capable of binding a cell surface receptor or a tumor associated antigen expressed on the surface of the cancer cells, in an amount effective to provide therapeutic benefit.
In the context of tumorigenic cancers, therapeutic benefit, in addition to including the effects discussed above, may also specifically include halting or slowing progression of tumor growth, regressing tumor growth, eradicating one or more tumors and/or increasing patient survival as compared to statistical averages for the type and stage of the cancer being treated. In one embodiment, the cancer being treated is a tumorigenic cancer.
The compounds and conjugates disclosed herein may be administered as monotherapy to provide therapeutic benefit, or may be administered adjunctive to, or with, other chemotherapeutic agents and/or radiation therapy. Chemotherapeutic agents to which the compounds and compositions disclosed herein may be utilized as adjunctive therapy may be targeted (for example, ADCs, protein kinase inhibitors, etc.) or non-targeted (for example, non-specific cytotoxic agents such as radionucleotides, alkylating agents and intercalating agents). Non-targeted chemotherapeutic agents with which the compounds and compositions disclosed herein may be adjunctively administered include, but are not limited to, methotrexate, taxol, L-asparaginase, mercaptopurine, thioguanine, hydroxyurea, cytarabine, cyclophosphamide, ifosfamide, nitrosoureas, cisplatin, carboplatin, mitomycin, dacarbazine, procarbizine, topotecan, nitrogen mustards, Cytoxan, etoposide, 5-fluorouracil, BCNU, irinotecan, camptothecins, bleomycin, doxorubicin, idarubicin, daunorubicin, dactinomycin, plicamycin, mitoxantrone, asparaginase, vinblastine, vincristine, vinorelbine, paclitaxel, calicheamicin, and docetaxel.
The compounds and conjugates disclosed herein that may not be effective as monotherapy to treat cancer may be administered adjunctive to, or with, other chemotherapeutic agents or radiation therapy to provide therapeutic benefit. One embodiment pertains to a method in which a compound or composition disclosed herein is administered in an amount effective to sensitize the tumor cells to standard chemotherapy and/or radiation therapy. Accordingly, in the context of treating cancers, “therapeutic benefit” includes administering the compounds and compositions disclosed herein adjunctive to, or with, chemotherapeutic agents and/or radiation therapy, either in patients who have not yet begin such therapy or who have but have not yet exhibited signs of resistance, or in patients who have begun to exhibit signs of resistance, as a means of sensitizing the tumors to the chemo and/or radiation therapy.
The compounds and conjugates disclosed herein may be utilized to treat an individual in need thereof. In certain embodiments, the individual is a mammal such as a human, or a non-human mammal. When administered to an animal, such as a human, the composition or the compound is preferably administered as a pharmaceutical composition comprising, for example, a disclosed compound and a pharmaceutically acceptable carrier.
Pharmaceutically acceptable carriers are well known in the art and include, for example, aqueous solutions such as water or physiologically buffered saline or other solvents or vehicles such as glycols, glycerol, oils such as olive oil, or injectable organic esters. In preferred embodiments, when such pharmaceutical compositions are for human administration, particularly for invasive routes of administration (i.e., routes, such as injection or implantation, that circumvent transport or diffusion through an epithelial barrier), the aqueous solution is pyrogen-free, or substantially pyrogen-free. The excipients can be chosen, for example, to effect delayed release of an agent or to selectively target one or more cells, tissues or organs. The pharmaceutical composition can be in dosage unit form such as tablet, capsule (including sprinkle capsule and gelatin capsule), granule, lyophile for reconstitution, powder, solution, syrup, suppository, injection, or the like. The composition can also be present in a transdermal delivery system, e.g., a skin patch. The composition can also be present in a solution suitable for topical administration, such as an ointment or cream.
A pharmaceutically acceptable carrier can contain physiologically acceptable agents that act, for example, to stabilize, increase solubility or to increase the absorption of a compound such as a compound of the invention. Such physiologically acceptable agents include, for example, carbohydrates, such as glucose, sucrose or dextrans, antioxidants, such as ascorbic acid or glutathione, chelating agents, low molecular weight proteins or other stabilizers or excipients. The choice of a pharmaceutically acceptable carrier, including a physiologically acceptable agent, depends, for example, on the route of administration of the composition. The preparation of pharmaceutical composition can be a selfemulsifying drug delivery system or a selfmicroemulsifying drug delivery system. The pharmaceutical composition (preparation) also can be a liposome or other polymer matrix, which can have incorporated therein, for example, a compound of the invention. Liposomes, for example, which comprise phospholipids or other lipids, are nontoxic, physiologically acceptable and metabolizable carriers that are relatively simple to make and administer.
The phrase “pharmaceutically acceptable” is employed herein to refer to those compounds, materials, compositions, and/or dosage forms which are, within the scope of sound medical judgment, suitable for use in contact with the tissues of human beings and animals without excessive toxicity, irritation, allergic response, or other problem or complication, commensurate with a reasonable benefit/risk ratio.
The phrase “pharmaceutically acceptable carrier” as used herein means a pharmaceutically acceptable material, composition or vehicle, such as a liquid or solid filler, diluent, excipient, solvent or encapsulating material. Each carrier must be “acceptable” in the sense of being compatible with the other ingredients of the formulation and not injurious to the patient. Some examples of materials which can serve as pharmaceutically acceptable carriers include: (1) sugars, such as lactose, glucose and sucrose; (2) starches, such as corn starch and potato starch; (3) cellulose, and its derivatives, such as sodium carboxymethyl cellulose, ethyl cellulose and cellulose acetate; (4) powdered tragacanth; (5) malt; (6) gelatin; (7) talc; (8) excipients, such as cocoa butter and suppository waxes; (9) oils, such as peanut oil, cottonseed oil, safflower oil, sesame oil, olive oil, corn oil and soybean oil; (10) glycols, such as propylene glycol; (11) polyols, such as glycerin, sorbitol, mannitol and polyethylene glycol; (12) esters, such as ethyl oleate and ethyl laurate; (13) agar; (14) buffering agents, such as magnesium hydroxide and aluminum hydroxide; (15) alginic acid; (16) pyrogen-free water; (17) isotonic saline; (18) Ringer's solution; (19) ethyl alcohol; (20) phosphate buffer solutions; and (21) other non-toxic compatible substances employed in pharmaceutical formulations.
A pharmaceutical composition (preparation) can be administered to a subject by any of a number of routes of administration including, for example, orally (for example, drenches as in aqueous or non-aqueous solutions or suspensions, tablets, capsules (including sprinkle capsules and gelatin capsules), boluses, powders, granules, pastes for application to the tongue); absorption through the oral mucosa (e.g., sublingually); anally, rectally or vaginally (for example, as a pessary, cream or foam); parenterally (including intramuscularly, intravenously, subcutaneously or intrathecally as, for example, a sterile solution or suspension); nasally; intraperitoneally; subcutaneously; transdermally (for example as a patch applied to the skin); and topically (for example, as a cream, ointment or spray applied to the skin, or as an eye drop). The compound may also be formulated for inhalation. In certain embodiments, a compound may be simply dissolved or suspended in sterile water. Details of appropriate routes of administration and compositions suitable for same can be found in, for example, U.S. Pat. Nos. 6,110,973, 5,763,493, 5,731,000, 5,541,231, 5,427,798, 5,358,970 and 4,172,896, as well as in patents cited therein.
The formulations may conveniently be presented in unit dosage form and may be prepared by any methods well known in the art of pharmacy. The amount of active ingredient which can be combined with a carrier material to produce a single dosage form will vary depending upon the host being treated, the particular mode of administration. The amount of active ingredient that can be combined with a carrier material to produce a single dosage form will generally be that amount of the compound which produces a therapeutic effect. Generally, out of one hundred percent, this amount will range from about 1 percent to about ninety-nine percent of active ingredient, preferably from about 5 percent to about 70 percent, most preferably from about 10 percent to about 30 percent.
Methods of preparing these formulations or compositions include the step of bringing into association an active compound, such as a compound of the invention, with the carrier and, optionally, one or more accessory ingredients. In general, the formulations are prepared by uniformly and intimately bringing into association a compound of the present invention with liquid carriers, or finely divided solid carriers, or both, and then, if necessary, shaping the product.
Formulations of the invention suitable for oral administration may be in the form of capsules (including sprinkle capsules and gelatin capsules), cachets, pills, tablets, lozenges (using a flavored basis, usually sucrose and acacia or tragacanth), lyophile, powders, granules, or as a solution or a suspension in an aqueous or non-aqueous liquid, or as an oil-in-water or water-in-oil liquid emulsion, or as an elixir or syrup, or as pastilles (using an inert base, such as gelatin and glycerin, or sucrose and acacia) and/or as mouth washes and the like, each containing a predetermined amount of a compound of the present invention as an active ingredient. Compounds, conjugates, or compositions thereof may also be administered as a bolus, electuary, or paste.
To prepare solid dosage forms for oral administration (capsules (including sprinkle capsules and gelatin capsules), tablets, pills, dragees, powders, granules and the like), the active ingredient is mixed with one or more pharmaceutically acceptable carriers, such as sodium citrate or dicalcium phosphate, and/or any of the following: (1) fillers or extenders, such as starches, lactose, sucrose, glucose, mannitol, and/or silicic acid; (2) binders, such as, for example, carboxymethylcellulose, alginates, gelatin, polyvinyl pyrrolidone, sucrose and/or acacia; (3) humectants, such as glycerol; (4) disintegrating agents, such as agar-agar, calcium carbonate, potato or tapioca starch, alginic acid, certain silicates, and sodium carbonate; (5) solution retarding agents, such as paraffin; (6) absorption accelerators, such as quaternary ammonium compounds; (7) wetting agents, such as, for example, cetyl alcohol and glycerol monostearate; (8) absorbents, such as kaolin and bentonite clay; (9) lubricants, such a talc, calcium stearate, magnesium stearate, solid polyethylene glycols, sodium lauryl sulfate, and mixtures thereof; (10) complexing agents, such as, modified and unmodified cyclodextrins; and (11) coloring agents. In the case of capsules (including sprinkle capsules and gelatin capsules), tablets and pills, the pharmaceutical compositions may also comprise buffering agents. Solid compositions of a similar type may also be employed as fillers in soft and hard-filled gelatin capsules using such excipients as lactose or milk sugars, as well as high molecular weight polyethylene glycols and the like.
A tablet may be made by compression or molding, optionally with one or more accessory ingredients. Compressed tablets may be prepared using binder (for example, gelatin or hydroxypropylmethyl cellulose), lubricant, inert diluent, preservative, disintegrant (for example, sodium starch glycolate or cross-linked sodium carboxymethyl cellulose), surface-active or dispersing agent. Molded tablets may be made by molding in a suitable machine a mixture of the powdered compound moistened with an inert liquid diluent.
The tablets, and other solid dosage forms of the pharmaceutical compositions, such as dragees, capsules (including sprinkle capsules and gelatin capsules), pills and granules, may optionally be scored or prepared with coatings and shells, such as enteric coatings and other coatings well known in the pharmaceutical-formulating art. They may also be formulated so as to provide slow or controlled release of the active ingredient therein using, for example, hydroxypropylmethyl cellulose in varying proportions to provide the desired release profile, other polymer matrices, liposomes and/or microspheres. They may be sterilized by, for example, filtration through a bacteria-retaining filter, or by incorporating sterilizing agents in the form of sterile solid compositions that can be dissolved in sterile water, or some other sterile injectable medium immediately before use. These compositions may also optionally contain opacifying agents and may be of a composition that they release the active ingredient(s) only, or preferentially, in a certain portion of the gastrointestinal tract, optionally, in a delayed manner. Examples of embedding compositions that can be used include polymeric substances and waxes. The active ingredient can also be in micro-encapsulated form, if appropriate, with one or more of the above-described excipients.
Liquid dosage forms useful for oral administration include pharmaceutically acceptable emulsions, lyophiles for reconstitution, microemulsions, solutions, suspensions, syrups and elixirs. In addition to the active ingredient, the liquid dosage forms may contain inert diluents commonly used in the art, such as, for example, water or other solvents, cyclodextrins and derivatives thereof, solubilizing agents and emulsifiers, such as ethyl alcohol, isopropyl alcohol, ethyl carbonate, ethyl acetate, benzyl alcohol, benzyl benzoate, propylene glycol, 1,3-butylene glycol, oils (in particular, cottonseed, groundnut, corn, germ, olive, castor and sesame oils), glycerol, tetrahydrofuryl alcohol, polyethylene glycols and fatty acid esters of sorbitan, and mixtures thereof.
Besides inert diluents, the oral compositions can also include adjuvants such as wetting agents, emulsifying and suspending agents, sweetening, flavoring, coloring, perfuming and preservative agents.
Suspensions, in addition to the active compounds, may contain suspending agents as, for example, ethoxylated isostearyl alcohols, polyoxyethylene sorbitol and sorbitan esters, microcrystalline cellulose, aluminum metahydroxide, bentonite, agar-agar and tragacanth, and mixtures thereof.
Formulations of the pharmaceutical compositions for rectal, vaginal, or urethral administration may be presented as a suppository, which may be prepared by mixing one or more active compounds with one or more suitable nonirritating excipients or carriers comprising, for example, cocoa butter, polyethylene glycol, a suppository wax or a salicylate, and which is solid at room temperature, but liquid at body temperature and, therefore, will melt in the rectum or vaginal cavity and release the active compound.
Formulations of the pharmaceutical compositions for administration to the mouth may be presented as a mouthwash, or an oral spray, or an oral ointment.
Alternatively or additionally, compositions can be formulated for delivery via a catheter, stent, wire, or other intraluminal device. Delivery via such devices may be especially useful for delivery to the bladder, urethra, ureter, rectum, or intestine.
Formulations which are suitable for vaginal administration also include pessaries, tampons, creams, gels, pastes, foams or spray formulations containing such carriers as are known in the art to be appropriate.
Dosage forms for the topical or transdermal administration include powders, sprays, ointments, pastes, creams, lotions, gels, solutions, patches and inhalants. The active compound may be mixed under sterile conditions with a pharmaceutically acceptable carrier, and with any preservatives, buffers, or propellants that may be required.
The ointments, pastes, creams and gels may contain, in addition to an active compound, excipients, such as animal and vegetable fats, oils, waxes, paraffins, starch, tragacanth, cellulose derivatives, polyethylene glycols, silicones, bentonites, silicic acid, talc and zinc oxide, or mixtures thereof.
Powders and sprays can contain, in addition to an active compound, excipients such as lactose, talc, silicic acid, aluminum hydroxide, calcium silicates and polyamide powder, or mixtures of these substances. Sprays can additionally contain customary propellants, such as chlorofluorohydrocarbons and volatile unsubstituted hydrocarbons, such as butane and propane.
Transdermal patches have the added advantage of providing controlled delivery of a compound of the present invention to the body. Such dosage forms can be made by dissolving or dispersing the active compound in the proper medium. Absorption enhancers can also be used to increase the flux of the compound across the skin. The rate of such flux can be controlled by either providing a rate controlling membrane or dispersing the compound in a polymer matrix or gel.
Ophthalmic formulations, eye ointments, powders, solutions and the like, are also contemplated as being within the scope of this invention. Exemplary ophthalmic formulations are described in U.S. Publication Nos. 2005/0080056, 2005/0059744, 2005/0031697, and 2005/004074; and U.S. Pat. No. 6,583,124, the contents of which are incorporated herein by reference. If desired, liquid ophthalmic formulations have properties similar to that of lacrimal fluids, aqueous humor or vitreous humor or are compatible with such fluids.
The phrases “parenteral administration” and “administered parenterally” as used herein means modes of administration other than enteral and topical administration, usually by injection, and includes, without limitation, intravenous, intramuscular, intraarterial, intrathecal, intracapsular, intraorbital, intracardiac, intradermal, intraperitoneal, transtracheal, subcutaneous, subcuticular, intraarticular, subcapsular, subarachnoid, intraspinal and intrasternal injection and infusion.
Pharmaceutical compositions suitable for parenteral administration comprise one or more active compounds in combination with one or more pharmaceutically acceptable sterile isotonic aqueous or nonaqueous solutions, dispersions, suspensions or emulsions, or sterile powders which may be reconstituted into sterile injectable solutions or dispersions just prior to use, which may contain antioxidants, buffers, bacteriostats, solutes which render the formulation isotonic with the blood of the intended recipient or suspending or thickening agents.
Examples of suitable aqueous and nonaqueous carriers that may be employed in the pharmaceutical compositions of the invention include water, ethanol, polyols (such as glycerol, propylene glycol, polyethylene glycol, and the like), and suitable mixtures thereof, vegetable oils, such as olive oil, and injectable organic esters, such as ethyl oleate. Proper fluidity can be maintained, for example, by the use of coating materials, such as lecithin, by the maintenance of the required particle size in the case of dispersions, and by the use of surfactants.
These compositions may also contain adjuvants such as preservatives, wetting agents, emulsifying agents and dispersing agents. Prevention of the action of microorganisms may be ensured by the inclusion of various antibacterial and antifungal agents, for example, paraben, chlorobutanol, phenol sorbic acid, and the like. It may also be desirable to include isotonic agents, such as sugars, sodium chloride, and the like into the compositions. In addition, prolonged absorption of the injectable pharmaceutical form may be brought about by the inclusion of agents that delay absorption such as aluminum monostearate and gelatin.
In some cases, in order to prolong the effect of a drug, it is desirable to slow the absorption of the drug from subcutaneous or intramuscular injection. This may be accomplished by the use of a liquid suspension of crystalline or amorphous material having poor water solubility. The rate of absorption of the drug then depends upon its rate of dissolution, which, in turn, may depend upon crystal size and crystalline form. Alternatively, delayed absorption of a parenterally administered drug form is accomplished by dissolving or suspending the drug in an oil vehicle.
Injectable depot forms are made by forming microencapsulated matrices of the subject compounds in biodegradable polymers such as polylactide-polyglycolide. Depending on the ratio of drug to polymer, and the nature of the particular polymer employed, the rate of drug release can be controlled. Examples of other biodegradable polymers include poly(orthoesters) and poly(anhydrides). Depot injectable formulations are also prepared by entrapping the drug in liposomes or microemulsions that are compatible with body tissue.
For use in the methods of this invention, active compounds can be given per se or as a pharmaceutical composition containing, for example, 0.1 to about 99.5% (more preferably, about 0.5 to about 90.0%) of active ingredient in combination with a pharmaceutically acceptable carrier.
In some embodiments of the invention, a compound of the invention is conjointly administered with one or more additional compounds/agents.
In certain such embodiments, the conjoint administration is simultaneous. In certain such embodiments, the compound of the invention is co-formulated with the one or more additional compounds. In certain other such embodiments, the compound of the invention is administered separately but simultaneously with the one or more additional compounds. In certain such embodiments, the conjoint administration is sequential, with administration of the compound of the invention preceding or following the administration of the one or more additional compound by minutes or hours.
Methods of introduction of a compound of the invention may also be provided by rechargeable or biodegradable devices. Various slow release polymeric devices have been developed and tested in vivo in recent years for the controlled delivery of drugs, including proteinaceous biopharmaceuticals. A variety of biocompatible polymers (including hydrogels), including both biodegradable and non-degradable polymers, can be used to form an implant for the sustained release of a compound at a particular target site.
Actual dosage levels of the active ingredients in the pharmaceutical compositions may be varied so as to obtain an amount of the active ingredient that is effective to achieve the desired therapeutic response for a particular patient, composition, and mode of administration, without being toxic to the patient.
The selected dosage level will depend upon a variety of factors including the activity of the particular compound, conjugate or combination of compounds and/or conjugates employed, or the ester, salt or amide thereof, the route of administration, the time of administration, the rate of excretion of the particular compound(s) being employed, the duration of the treatment, other drugs, compounds and/or materials used in combination with the particular compound(s) employed, the age, sex, weight, condition, general health and prior medical history of the patient being treated, and like factors well known in the medical arts.
A physician or veterinarian having ordinary skill in the art can readily determine and prescribe the therapeutically effective amount of the pharmaceutical composition required. For example, the physician or veterinarian could start doses of the pharmaceutical composition or compound at levels lower than that required in order to achieve the desired therapeutic effect and gradually increase the dosage until the desired effect is achieved. “Therapeutically effective amount” refers to the concentration of a compound that is sufficient to elicit the desired therapeutic effect. It is generally understood that the effective amount of the compound will vary according to the weight, sex, age, and medical history of the subject. Other factors that influence the effective amount may include, but are not limited to, the severity of the patient's condition, the disorder being treated, the stability of the compound, and, if desired, another type of therapeutic agent being administered with the compound of the invention. A larger total dose can be delivered by multiple administrations of the agent. Methods to determine efficacy and dosage are known to those skilled in the art (Isselbacher et al. (1996) Harrison's Principles of Internal Medicine 13 ed., 1814-1882, herein incorporated by reference).
In general, a suitable daily dose of an active compound used in the compositions and methods of the invention will be that amount of the compound that is the lowest dose effective to produce a therapeutic effect. Such an effective dose will generally depend upon the factors described above.
If desired, the effective daily dose of the active compound or conjugate may be administered as one, two, three, four, five, six, or more sub-doses administered separately at appropriate intervals throughout the day, optionally, in unit dosage forms. In certain embodiments of the present invention, the active compound may be administered two or three times daily. In preferred embodiments, the active compound will be administered once daily.
The patient receiving this treatment is any animal in need, including primates, in particular humans, and other mammals such as equines, cattle, swine and sheep; and poultry and pets in general.
In certain embodiments, compounds or conjugates disclosed herein may be used alone or conjointly administered with another type of therapeutic agent. As used herein, the phrase “conjoint administration” refers to any form of administration of two or more different therapeutic compounds or conjugates such that the second compound or conjugate is administered while the previously administered therapeutic compound or conjugate is still effective in the body (e.g., the two compounds or conjugates are simultaneously effective in the patient, which may include synergistic effects of the two compounds or conjugates). For example, the different therapeutic compounds or conjugates can be administered either in the same formulation or in a separate formulation, either concomitantly or sequentially. In certain embodiments, the different therapeutic compounds or conjugates can be administered within one hour, 12 hours, 24 hours, 36 hours, 48 hours, 72 hours, a week, or more of one another. Thus, an individual who receives such treatment can benefit from a combined effect of different therapeutic compounds or conjugates.
This invention includes the use of pharmaceutically acceptable salts of compounds or conjugates disclosed herein. In certain embodiments, contemplated salts of the invention include, but are not limited to, alkyl, dialkyl, trialkyl, or tetra-alkyl ammonium salts. In certain embodiments, contemplated salts of the invention include, but are not limited to, L-arginine, benenthamine, benzathine, betaine, calcium hydroxide, choline, deanol, diethanolamine, diethylamine, 2-(diethylamino)ethanol, ethanolamine, ethylenediamine, N-methylglucamine, hydrabamine, 1H-imidazole, lithium, L-lysine, magnesium, 4-(2-hydroxyethyl)morpholine, piperazine, potassium, 1-(2-hydroxyethyl)pyrrolidine, sodium, triethanolamine, tromethamine, and zinc salts. In certain embodiments, contemplated salts of the invention include, but are not limited to, Na, Ca, K, Mg, Zn, or other metal salts.
The pharmaceutically acceptable acid addition salts can also exist as various solvates, such as with water, methanol, ethanol, dimethylformamide, and the like. Mixtures of such solvates can also be prepared. The source of such solvate can be from the solvent of crystallization, inherent in the solvent of preparation or crystallization, or adventitious to such solvent.
Wetting agents, emulsifiers and lubricants, such as sodium lauryl sulfate and magnesium stearate, as well as coloring agents, release agents, coating agents, sweetening, flavoring and perfuming agents, preservatives and antioxidants can also be present in the compositions.
Examples of pharmaceutically acceptable antioxidants include: (1) water-soluble antioxidants, such as ascorbic acid, cysteine hydrochloride, sodium bisulfate, sodium metabisulfite, sodium sulfite and the like; (2) oil-soluble antioxidants, such as ascorbyl palmitate, butylated hydroxyanisole (BHA), butylated hydroxytoluene (BHT), lecithin, propyl gallate, alpha-tocopherol, and the like; and (3) metal-chelating agents, such as citric acid, ethylenediamine tetraacetic acid (EDTA), sorbitol, tartaric acid, phosphoric acid, and the like.
The invention now being generally described, it will be more readily understood by reference to the following examples, which are included merely for purposes of illustration of certain aspects and embodiments of the present invention, and are not intended to limit the invention.
AcO: acetyl
AcOH: acetic acid
EA: ethyl acetate
DCM: dichloromethane
m-CPBA: meta-chloroperoxybenzoic acid
TBDMSOTf: tert-butyldimethylsilyl triflate
TBDMS: tert-Butyldimethylsilyl
DMF: Dimethylformamide
EDCI: 1-Ethyl-3-(3-dimethylaminopropyl)carbodiimide
HOBt: 1-Hydroxybenzotriazole hydrate
ACN: Acetonitrile
TBDMS-Cl: tert-Butyldimethylsilyl chloride
DBU: 1,8-Diazabicyclo[5.4.0]undec-7-ene
THF: Tetrahydrofuran
DCC: N,N′-Dicyclohexylcarbodiimide
DMAP: 4-Dimethylaminopyridine
NHS: N-Hydroxysuccinimide
DIPEA: Diisopropylethylamine
TEA: triethylamine
DEAD: diethyl azodicarboxylate
Boc: tert-butyloxycarbonyl
LAH: lithium aluminium hydride
CDI: 1,1′-Carbonyldiimidazole
BEMP: 2-tert-Butylimino-2-diethylamino-1,3-dimethylperhydro-1,3,2-diazaphosphorine
TPSCl: Triphenylchlorosilane
tfa: Trifluoroacetyl
PyBop: benzotriazol-1-yl-oxytripyrrolidinophosphonium hexafluorophosphate
HBTU: N,N,N′,N′-Tetramethyl-O-(1H-benzotriazol-1-yl)uronium hexafluorophosphate
TFA: Trifluoroacetic acid
DIC: N,N′-Diisopropylcarbodiimide
DMPA: 2,2-Dimethoxy-2-phenylacetophenone
TBAF: Tetra-n-butylammonium fluoride
AgOTf: Silver trifluoromethanesulfonate
(BimC4A)3: Tripotassium 5,5′,5″-[2,2′,2″-nitrilotris(methylene)tris(1H-benzimidazole-2,1-diyl)]tripentanoate hydrate
β-D-galactose pentaacetate (Alfa, CAS 4163-60-4, 5.0 g, 12.81 mmol) was dissolved in 33% HBr in AcOH (20 mL) at 0° C. under N2 atmosphere. The mixture was warmed to room temperature. After stirring at room temperature for 4 hours, the mixture was concentrated under reduced pressure, and then EA (1000 mL) and saturated sodium bicarbonate (1000 mL) were added. The organic layer was dried over anhydrous Na2SO4, filtered, and concentrated under reduced pressure. The residue was purified by column chromatography to provide compound Int-TG (5.2 g, 99%).
1H NMR (400 MHz, CDCl3) δ 6.70 (d, J=4.0 Hz, 1H), 5.52 (di, J=2.4 Hz, 1H), 5.41 (dd, J=7.6, 2.8 Hz, 1H), 5.05 (dd, J=6.4, 4.0 Hz, 1H), 4.49 (t, J=6.4 Hz, 1H), 4.22-4.09 (m, 2H), 2.16-2.01 (m, 12H).
Compound FA-Int was obtained by a method similar to the methods described in the U.S. Patent Application Publication No. 2007/0276018, which is incorporated herein by reference in its entirety.
Preparation of Compound IntCl-L-1a
To a solution of 2,2-(ethylenedioxy)bis(ethylamine) (50 g, 337.4 mmol) in DCM (300 mL) was added Boc2O (14.7 g, 67.47 mmol) in DCM (200 mL) under N2 atmosphere. The mixture was stirred overnight at room temperature and quenched with H2O (500 mL) and brine (150 mL×3). The organic layer was dried over anhydrous Na2SO4, filtered, and concentrated under reduced pressure. After concentration, compound IntCl-L-1a was used directly in the next reaction without purification (13.01 g, 78%).
1H NMR (400 MHz, CDCl3) δ 5.20 (s, 1H), 3.62-3.62 (m, 4H), 3.55-3.51 (m, 4H), 3.35-3.25 (m, 2H), 2.90-2.87 (m, 2H), 1.45 (s, 9H).
Preparation of Compound IntCl-L-1b
To a solution of compound IntCl-L-1a (6 g, 24.16 mmol) and z-L-Glu-OMe (5.94 g, 20.13 mmol) in DMF (30 mL) was added PyBOP (15.72 g, 30.20 mmol) and DIPEA (10.52 mL, 60.39 mmol) at 0° C. under N2 atmosphere. The mixture was stirred at room temperature for 2 hours. EA (20 mL×6), H2O (20 mL) and brine (200 mL) were added to the mixture. The organic layer was dried over anhydrous Na2SO4, filtered, and concentrated under reduced pressure. The residue was purified by column chromatography to provide compound IntCl-L-1b (10.6 g, quant.).
1H NMR (400 MHz, CDCl3) δ 7.40-7.28 (m, 5H), 6.32 (s, 1H), 5.80 (s, 1H), 5.11 (s, 2H), 5.02 (s, 1H), 4.36 (s, 1H), 3.74 (s, 3H), 3.60 (s, 4H), 3.54 (s, 4H), 3.44-3.43 (m, 2H), 3.38-3.21 (m, 2H), 2.30-2.20 (m, 3H), 2.04-2.00 (m, 1H), 1.76 (s, 1H), 1.44 (s, 9H). EI-MS m/z: 526 (M+).
Preparation of Compound IntCl-L-1c
To a solution of compound IntCl-L-1b (3 g, 5.71 mmol) in MeOH (25 mL) was added Pd/C (900 mg) at room temperature under H2. The mixture was stirred for 3 hours and filtered through Celite®, and then concentrated under reduced pressure. Compound IntCl-L-1c was used directly in the next step without further purification (2.23 g, crude).
1H NMR (400 MHz, CDCl3) δ 6.56 (s, 1H), 5.20 (s, 1H), 3.73 (s, 3H), 3.61 (s, 4H), 3.57-3.55 (m, 4H), 3.53-3.50 (m, 1H), 3.48-3.44 (m, 4H), 2.40-2.32 (m, 2H), 2.18-2.10 (m, 1H), 1.88-1.81 (m, 1H), 1.44 (s, 9H). EI-MS m/z: 392 (M+).
Preparation of Compound IntCl-L-1d
To a solution of compound IntCl-L-1c (2.23 g, 5.71 mmol) and compound FA-Int (2.12 g, 5.19 mmol) in DMF (15 mL) was added HBTU (2.36 g, 6.23 mmol) and DIPEA (1.36 mL, 7.78 mmol) at 0° C. under N2 atmosphere. The mixture was stirred at room temperature for 2.5 hours and EA (100 mL×7) and H2O (100 mL) were added. The organic layer was dried over anhydrous Na2SO4, filtered, and concentrated under reduced pressure. The residue was purified by column chromatography to provide compound IntCl-L-1d (4.06 g, quant.).
1H NMR (400 Hz, DMSO-d6) δ 8.89 (d, J=7.6 Hz, 1H), 8.63 (s, 1H), 7.90 (d, J=8 Hz, 2H), 7.64 (d, J=8.4 Hz, 2H), 6.76-6.75 (m, 1H), 5.12 (s, 1H), 4.41-4.36 (m, 1H), 3.64 (s, 3H), 3.47 (s, 4H), 3.39-3.35 (m, 4H), 3.20-3.12 (m, 2H), 3.07-3.02 (m, 2H), 2.23 (t, J=7.4 Hz, 2H), 2.09-2.06 (m, 1H), 1.96-1.91 (m, 1H), 1.36 (s, 9H). EI-MS m/z: 782 (M+).
Preparation of Compound IntCl-L-1
To a solution of compound IntCl-L-1d (4.68 g, 5.99 mmol) in DCM (50 mL) TFA (10 mL) was added dropwise at 0° C. The reaction was allowed to warm to room temperature and stirred for 3 hours. The mixture was concentrated under reduced pressure and used directly in the next step without further purification (4.08 g, crude).
EI-MS m/z: 682 (M+).
Preparation of Compound K-1
To a solution of L-Lys(Boc)-OMe (3 g, 10.11 mmol) and 4-pentynoic acid (992 mg, 10.11 mmol) in DMF (30 mL) was added in one portion PyBop (7.89 g, 15.16 mmol) followed by DIPEA (5.26 mL, 30.32 mmol) at 0° C. under N2 atmosphere. The mixture was stirred overnight at room temperature. EA (80 mL×4) and saturated citric acid (60 mL) were added to the mixture and organic layer was washed with NaHCO3 (120 mL), brine (100 mL), dried over anhydrous Na2SO4, filtered, and concentrated under reduced pressure. The residue was purified by column chromatography to provide compound K-1 (3.29 g, 95%).
EI-MS m/z: 341 (M+).
Preparation of Compound K-2
To a solution of compound K-1 (3.29 g, 9.66 mmol) in MeOH (15 mL) at 0° C. under N2 atmosphere was added LiOH.H2O (2.03 g, 48.32 mmol) dissolved in H2O (15 mL).
The mixture was stirred at 0° C. for 30 minutes, and warmed up to room temperature for 2 hours. The mixture was acidified with saturated citric acid aqueous solution, and EA (40 mL×2) was added to the mixture. The organic layer was washed with H2O (30 mL) and brine (30 mL), dried over anhydrous Na2SO4, filtered, and concentrated under reduced pressure. Compound K-2 was used directly in the next step without further purification (3.15 g, crude).
EI-MS m/z: 327 (M+).
Preparation of Compound K
To a solution of compound K-2 (3.69 g, 11.31 mmol) in DMF (20 mL) was added NHS (1.69 mg, 14.7 mmol) and EDCI (2.93 g, 15.26 mmol) under N2 atmosphere. The mixture was stirred overnight at room temperature and concentrated. The residue, compound K, was used directly in the next step without further purification (4.79 g, crude).
EI-MS m/z: 446 (M++Na).
Preparation of Compound IntC-L-2
To a solution of compound IntC-L-1 (4.08 g, 5.99 mmol) and compound K (4.79 g, 11.31 mmol) in DMF (25 mL) was added DIPEA (5.21 mL, 29.93 mmol) under N2 atmosphere. The mixture was stirred overnight at room temperature. H2O (70 mL) and brine (60 mL) were added to the mixture and extracted with EA (70 mL×7). And the organic layer was dried over anhydrous Na2SO4, filtered, and concentrated under reduced pressure. The residue was purified by column chromatography to provide compound IntC-L-2 (1.12 g, 19%).
EI-MS m/z: 991 (M+).
Preparation of Compound IntC-L-3
To a solution of compound IntA-L-2 (1.12 g, 1.13 mmol) in MeOH (27 mL) was added LiOH.H2O (356 mg, 8.48 mmol) dissolved in H2O (10 mL) at 0° C. under N2 atmosphere. The mixture was stirred at 0° C. for 30 minutes, and warmed up to room temperature for 3 hours. The mixture was acidified with 2M HCl and concentrated under reduced pressure. The residue, compound IntC-L-3, was used directly in the next step without further purification (996 mg, crude).
EI-MS m/z: 880 (M+).
Preparation of Compound IntC-L
To a solution of compound IntC-L-3 (996 mg, 1.13 mmol) in DCM (30 mL) was added TFA (8 mL) at 0° C. under N2 atmosphere. After stirring at 0° C. for 1 hour, the mixture was concentrated under reduced pressure. The residue was dissolved in DMSO (5 mL) and purified by Prep-HPLC, which produced compound IntC-L (409 mg, 32%).
EI-MS m/z: 780 (M+).
Preparation of Compound MPS-D1a
To a solution of 4-acetylbenzoic acid (9 g, 54.82 mmol) in EtOH (50 mL) was added piperidine hydrochloride (6.66 g, 54.82 mmol), paraformaldehyde (4.95 g, 164.5 mmol), and conc. HCl (0.6 mL) at room temperature under N2 atmosphere. The mixture was stirred at 100° C. for 16 hours and cooled to room temperature. Acetone (90 mL) was added dropwise to the mixture. The mixture was stirred at 0° C. for 1 hour. The solid was filtered and washed with diethyl ether (30 mL×2) to provide compound MPS-D1a (6.11 g, 38%).
1H NMR (400 MHz, DMSO-d6) δ 8.08 (s, 4H), 5.73 (s, 1H), 3.65 (t, J=7.2 Hz, 2H), 3.35 (t, J=7.2 Hz, 2H), 3.31 (m, 6H), 1.74 (s, 4H).
Preparation of Compound MPS-D1b
To a solution of MPS-D1a (6.11 g, 20.52 mmol) in EtOH (40 mL) and MeOH (26 mL) was added 4-methoxybenzenethiol (2.55 g, 20.52 mmol) and piperidine (0.3 mL, 3.08 mmol) at room temperature. The mixture was stirred at 100° C. for 16 hours, then cooled to 0° C. and additionally stirred for 1 hour. The solid was filtered and washed with ether (30 mL×2) to provide compound MPS-D1b (5.56 g, 90%).
1H NMR (400 MHz, CDCl3) δ 8.04-7.99 (m, 4H), 7.27 (d, J=8.4 Hz, 2H), 7.15 (d, J=7.6 Hz, 2H), 3.39-3.36 (m, 2H), 3.25-3.21 (m, 2H), 2.27 (s, 3H).
Preparation of Compound MPS-D1
To a solution of MPS-D1b (5.56 g, 18.51 mmol) in MeOH (90 mL) and distilled water (90 mL) was added oxone (25.03 g, 40.72 mmol) at 0° C. under N2 atmosphere. After stirring at room temperature for 14 hours, the mixture was quenched with distilled water (100 mL) and chloroform (150 mL×3). The organic layer was washed with brine (200 mL), dried over anhydrous Na2SO4, filtered, and concentrated under reduced pressure to provide compound MPS-D1 (5.29 g, 86%).
1H NMR (400 MHz, CDCl3) δ 8.04-7.99 (m, 4H), 7.81 (d, J=8.4 Hz, 2H), 7.46 (d, J=8.4 Hz, 2H), 3.63 (t, J=7.2 Hz, 2H), 3.41 (t, J=7.2 Hz, 2H), 2.44 (s, 3H). EI-MS m/z: 333 (M+).
Preparation of Compound L-1a
To a solution of hexaethylene glycol (5.0 g, 17.71 mmol) in anhydrous DCM (178 mL) was added KI (294 mg, 1.77 mmol) and Ag2O (4.92 g, 19.48 mmol) under N2 atmosphere. The mixture was stirred overnight at room temperature. After the reaction was completed, the mixture was filtered through Celite® and washed with DCM (100 mL). The filtrate was concentrated under reduced pressure. The residue was purified by column chromatography to provide compound L-1a (5.98 g, 73%).
1H NMR (400 MHz, CDCl3) δ 7.80 (d, J=8.4 Hz, 2H), 7.35 (d, J=8.4 Hz, 2H), 4.16 (t, J=4.8 Hz, 2H), 3.71-3.58 (m, 22H), 2.88 (br, 1H), 2.45 (s, 3H).
Preparation of Compound L-1b
To a solution of compound L-1a (5.98 g, 13.7 mmol) DMF (30 mL) was added NaN3 (1.34 g, 20.55 mmol) under N2 atmosphere. The mixture was stirred at 110° C. for 1 hour and concentrated under reduced pressure. The residue was purified by column chromatography to provide compound L-1b (4.1 g, 97%).
1H NMR (400 MHz, CDCl3) δ 3.72-3.60 (m, 22H), 3.39 (t, J=4.8 Hz, 2H), 2.78 (br, 1H).
Preparation of Compound L-1c
To a solution of compound L-1b (2 g, 6.51 mmol) in acetone (56 mL) was slowly added dropwise Jones reagent solution (5 mL) at −5° C. under N2 atmosphere. The mixture was stirred at room temperature for 2 hours and filtered through celite, and the filtrate was concentrated under reduced pressure. The filtrate was diluted with DCM (20 mL×2) and water (5 mL). The organic layer was dried over anhydrous Na2SO4, filtered, and concentrated under reduced pressure. The residue was purified by column chromatography to provide compound L-1c (1.85 g, 89%).
1H NMR (400 MHz, CDCl3) δ 4.15 (s, 2H), 3.76-3.67 (m, 18H), 3.40 (t, J=4.8 Hz, 2H).
Preparation of Compound L-1d
To a solution of compound L-1c (500 mg, 1.56 mmol) in DCM (10 mL) was added t-BuOH (305 μL, 3.11 mmol), DIC (292.5 μL, 1.87 mmol), and DMAP (19 mg, 0.16 mmol) under N2 atmosphere. The mixture was stirred at room temperature for 4 hours and diluted with DCM (30 mL×2). The organic layer was washed with water (5 mL), dried over anhydrous Na2SO4, filtered, and concentrated under reduced pressure. The residue was purified by column chromatography to provide compound L-1d (278.5 mg, 47%).
1H NMR (400 MHz, CDCl3) δ 4.01 (s, 2H), 3.70-3.66 (m, 18H), 3.38 (t, J=4.8 Hz, 2H), 1.47 (s, 9H).
Preparation of Compound L-1e
To a solution of compound L-1d (278 mg, 0.74 mmol) in EtOH (5 mL) was added Pd/C (236 mg, 0.11 mmol) and 4M-HCl (in 1,4-dioxane) under N2 atmosphere. The mixture was stirred at room temperature for 1 hour. The mixture was filtered through Celite® to remove Pd/C, and concentrated to provide compound L-1e (255.3 mg, 89.2%).
1H NMR (400 MHz, DMSO-d6) δ 8.32 (s, 1H), 3.98 (s, 2H), 3.55-3.40 (m, 18H), 3.86 (t, J=5.6 Hz, 2H), 2.70-2.64 (m, 2H), 1.42 (s, 9H).
Preparation of Compound MPS-D2
To a solution of compound L-1e (255.3 mg, 0.66 mmol) and compound MPS-D1 (240.6 mg, 0.72 mmol) in DMF (6 mL) was added HBTU (300 mg, 0.79 mmol) and DIPEA (229.3 μL, 1.32 mmol) under a nitrogen atmosphere. The mixture was stirred at room temperature for 2 hours and diluted with EA (20 mL×2) and water (5 mL). The organic layer was dried over anhydrous Na2SO4, filtered, and concentrated under reduced pressure. The residue was purified by column chromatography to provide compound MPS-D2 (306 mg, 71%).
1H NMR (400 MHz, CDCl3) δ 7.95 (s, 4H), 7.82 (d, J=8.0 Hz, 2H), 7.38 (d, J=8.0 Hz, 2H), 7.33-7.30 (m, 1H), 3.98 (s, 2H), 3.68-3.63 (m, 18H), 3.55-3.53 (m, 2H), 3.49-3.47 (m, 2H), 2.95 (s, 1H), 2.88 (s, 1H), 2.46 (s, 3H) 1.46 (s, 9H). EI-MS m/z: 666 (M++1).
Preparation of Compound MPS-D3
To a solution of compound MPS-D2 (120 mg, 0.18 mmol) in DCM (8 mL) was added TFA (4 mL) at 0° C. The reaction was allowed to warm to room temperature over 2 hours under N2 atmosphere. After the reaction was completed, the mixture was concentrated under reduced pressure three times by using toluene as a co-solvent, thereby removing TFA. Then, the mixture was dissolved in DMF again, and NHS (31 mg, 0.27 mmol) and EDCI (52 mg, 0.27 mmol) were added thereto. The mixture was stirred overnight at room temperature. After the reaction was complete, compound MPS-D3 was used directly in the next step without further purification (127 mg, crude).
EI-MS m/z: 707 (M+).
Preparation of Compound MPS-D4
To a solution of compound IntC-L (60 mg, 0.08 mmol) and compound MPS-D3 (82 mg, 0.12 mmol) in DMF (6 mL) was added DIPEA (112 μL, 0.64 mmol) under N2 atmosphere. The mixture was stirred for 30 minutes and dissolved in DMSO (3 mL) and purified by HPLC, which produced compound MPS-D4 (77 mg, 73%).
EI-MS m/z: 1373 (M+).
To a solution of compound MPS-D1 (500 mg, 1.50 mmol) in DMF (8 mL) was added propargyl amine (106 μL, 1.65 mmol) at room temperature under N2 atmosphere. The reaction was cooled to 0° C. and PyBop (1.17 g, 2.26 mmol) and DIPEA (524 μL, 3.01 mmol) were added thereto. The mixture was stirred at room temperature for 2 hours and diluted with EA (30 mL×2) and distilled water (20 mL). The organic layer was extracted and washed with brine (50 mL), dried over anhydrous Na2SO4, filtered, and concentrated under reduced pressure. The residue was purified by column chromatography to provide compound MPS-D5 (510 mg, 92%).
1H NMR (400 MHz, CDCl3) δ 9.11 (t, J=5.2 Hz, 1H), 7.98-7.89 (m, 4H), 7.79 (d, J=8.0 Hz, 2H), 7.43 (d, J=8.4 Hz, 2H), 4.05-4.03 (m, 2H), 3.60 (t, J=7.6 Hz, 2H), 3.39 (t, J=7.2 Hz, 2H), 3.12 (s, 1H), 2.38 (s, 3H).
Preparation of Compound A-15-1a
To a solution of z-Valine (1.01 g, 3.81 mmol) and N-methylaniline (412 μL, 3.81 mmol) in DCM (15 mL) was added DCC (1.18 g, 5.71 mmol) and DMAP (92 mg, 0.76 mmol) at room temperature under N2 atmosphere, followed by stirring at room temperature for 3 hours. The mixture was filtered through Celite® and concentrated under reduced pressure. The residue was purified by column chromatography to provide compound A-15-1a (1.05 g, 78%).
EI-MS m/z: 584 (M+).
Preparation of Compound A-15-1b
Compound A-15-1a (1.05 g, 2.96 mmol) was dissolved in MeOH (15 mL) under a nitrogen atmosphere, Pd/C (378 mg, 0.18 mmol) was added. After stirring at room temperature for 2 hours under H2, the mixture was filtered through Celite® and washed with MeOH (30 mL). The filtrate was concentrated to provide compound A-15-1b (560 mg, 86.0%).
1H NMR (400 MHz, CDCl3) δ 7.45-7.41 (m, 2H), 7.38-7.36 (m, 1H), 7.19 (d, J=7.6 Hz, 1H), 3.32 (s, 3H), 2.88 (d, J=6.0 Hz, 1H), 2.33 (s, 3H), 1.73 (q, J=6.8 Hz, 1H), 0.86 (d, J=6.8 Hz, 3H), 0.80 (d, J=6.8 Hz, 3H).
Preparation of Compound A-15-1
To a solution of compound A-15-1b (220 mg, 0.99 mmol) in DMF (8 mL) was added 37% formaldehyde (223 μL, 2.99 mmol) and AcOH (1.14 mL, 19.8 mmol) under N2 atmosphere. After stirring at room temperature for 5 minutes, NaCNBH3 (125 mg, 1.98 mmol) was added. The mixture was stirred at room temperature for 2 hours and quenched with saturated NaHCO3 (15 mL×2). To the mixture was added EA (20 mL×2) and brine (20 mL). The organic layer was dried over anhydrous Na2SO4, filtered, and concentrated under reduced pressure. The residue was purified by column chromatography to provide compound A-15-1 (189 mg, 81%).
Preparation of Compound POS-D1a
To a solution of Ethyl 4-hydrobenzoate (20 g, 120.35 mmol) in EtOH (60 mL) was added NH2NH2.H2O (88 mL, 1805.4 mmol) under N2 atmosphere. The mixture was stirred overnight at reflux. After the reaction was completed, the mixture was cooled to room temperature, and concentrated under reduced pressure, followed by EtOH trituration, thereby obtaining compound POS-D1a (17.539 g, 96%).
1H NMR (400 MHz, DMSO-d6) δ 9.50 (s, 1H), 7.68 (d, J=8.4 Hz, 2H), 6.78 (d, J=8.8 Hz, 2H), 4.37 (s, 2H). EI-MS m/z: 431 (M+).
Preparation of Compound POS-D1b
To a solution of compound POS-D1a (17.54 g, 115.28 mmol) in EtOH (200 mL) and DMF (100 mL) was added CS2 (45 mL, 749.32 mmol) and KOH (6.5 g, 115.28 mmol) under N2 atmosphere. After stirring at 85° C. for 18 hours, EA (500 mL) and H2O (500 ML) were added to the mixture, which was then acidified with 1M HCl. The organic layer was washed with H2O (500 mL), and brine (500 mL), dried over anhydrous Na2SO4, filtered, and concentrated under reduced pressure. The residue was subjected to ether/hexane trituration to provide compound POS-D1b (20.7 g, 93%).
1H NMR (400 MHz, DMSO-d6) δ 10.44 (s, 1H), 7.72 (d, J=8.4 Hz, 2H), 6.94 (d, J=8.0 Hz, 2H). EI-MS m/z: 195 (M+).
Preparation of Compound POS-D1c
To a solution of compound POS-D1b (5 g, 25.75 mmol) in THF (100 mL) was added dropwise Et3N (4.3 mL, 30.9 mmol) and MeI (1.76 mL, 28.33 mmol) at 0° C. After stirring at 0° C. for 10 minutes, the mixture was warm to room temperature. And then the mixture was stirred for 2 hours and diluted with EA (100 mL×2) The organic layer was washed with H2O (100 mL), and brine (100 mL), dried over anhydrous Na2SO4, filtered, and concentrated under reduced pressure. The residue was subjected to ether trituration to provide compound POS-D1c (5.15 g, 96%).
1H NMR (400 MHz, DMSO-d6) δ 7.80 (d, J=8.4 Hz, 2H), 6.94 (d, J=8.4 Hz, 2H), 2.74 (s, 3H). EI-MS m/z: 209 (M+).
Preparation of Compound POS-D1d
To a solution of compound POS-D1c (3.2 g, 15.37 mmol) in EtOH (150 mL) was added 70% m-CPBA (11.4 g, 46.11 mmol) at 0° C. under N2 atmosphere. After stirring at room temperature for 5 hours, 70% m-CPBA (11.4 g, 46.11 mmol) was further added. Then the mixture was stirred overnight at room temperature and quenched with H2O (500 mL), saturated NaHCO3 (300 mL), diluted with EA (500 mL×2). The organic layer was washed with brine (300 mL), dried over anhydrous Na2SO4, filtered, and concentrated under reduced pressure. The residue was subjected to HX/EA=1:1 (100 mL) trituration to provide compound POS-D1d (3.2 mg, 89%).
1H NMR (400 MHz, DMSO-d6) δ 7.95 (d, J=8.8 Hz, 2H), 7.01 (d, J=8.8 Hz, 2H), 3.69 (4s, 3H). EI-MS m/z: 241 (M+).
Preparation of Compound POS-D1
To a solution of tetraethylene glycol (17.3 ml, 0.10 mol) in THF (50 mL) was added dropwise NaH (2.6 g, 0.065 mmol) at 0° C. After the mixture was stirred at 0° C. for 1 hour, propargyl bromide (5.95 g, 0.05 mol) was added. The mixture was stirred overnight at room temperature and quenched with ice/water, diluted with EA (100 mL×2). The organic layer was washed with H2O (100 mL), and brine (100 mL), dried over anhydrous Na2SO4, filtered, and concentrated under reduced pressure. 3,6,9,12-tetraoxapentadec-14-yn-1-ol was obtained by trituration of the residue with ether (5.87 g, 51%).
1H NMR (400 MHz, CDCl3) δ 4.21 (s, 2H), 3.73-3.66 (m, 14H), 3.59-3.61 (m, 2H), 2.60 (s, 1H), 2.42 (t, J=2.4 Hz, 1H).
3,6,9,12-Tetraoxapentadec-14-yn-1-ol (660 mg, 2.84 mmol) and compound D-4-5 (310 mg, 1.29 mmol) were dissolved in THF (8 mL) and DMF (0.8 mL), and PPh3 (667 mg, 2.58 mmol) was added. The mixture was cooled to 0° C. 2.2M DEAD (1.17 mL, 2.58 mmol) was added thereto, and the mixture was stirred at 0° C. for 3 hours. After the reaction was completed, EA (15 mL×2) and distilled water (15 mL) were added, and the organic layer was extracted and washed with brine (20 mL). The obtained organic layer was dried over anhydrous Na2SO4, filtered, and concentrated under reduced pressure to provide compound POS-D1 (205 mg, 30%).
EI-MS m/z: 455 (M+).
To a solution of compound (1R,2S)-(−)-Norephedrine (1 g, 6.61 mmol) in DCM (5 mL) was added TEA (0.92 mL, 6.61 mmol) and acetyl chloride (0.47 mL, 6.61 mmol) at 0° C. under N2 atmosphere. After stirring at room temperature for 2 hours, the mixture was quenched with H2O (7 mL). The organic layer was extracted with DCM (2×8 mL, dried over anhydrous MgSO4, filtered, and concentrated. The residue was purified by column chromatography to produce compound Int-TG13 (987 mg, 78%).
1H-NMR (400 MHz, CDCl3) δ 7.28 (m, 5H), 5.70 (m, 1H), 4.86 (s, 1H), 4.34-4.30 (m, 1H), 3.65 (m, 1H), 2.00 (s, 3H), 1.01 (d, J=7.2 Hz, 3H)
Preparation of Compound IntB-Q3-1
To a solution of PNU-1529682 (52 mg, 0.081 mmol) in MeOH (5 ml)/distilled water (3 mL) was added NaIO4 (18 mg, 0.081 mmol) at room temperature. After stirring 2 hours, the mixture was concentrated under reduced pressure, which produced the crude compound IntB-Q3-1 (51 mg, 99%). EI-MS m/z: 628 (M+1).
Preparation of Compound IntB-Q3
To a solution of compound IntB-Q3-1 (51 mg, 0.081 mmol) in dry DCM (5 mL) was added 2-(Dimethylamino)ethyl amine (6.1 μL, 0.089 mmol) and TEA (34 μL, 0.243 mmol), TBTU (52 mg, 0.162 mmol) at room temperature. After stirring for 1 hour, the mixture was diluted with DCM (2×8 mL). The organic layer was washed with H2O (8 mL), dried over anhydrous Na2SO4, filtered, and concentrated under reduced pressure. The residue was purified by column chromatography to produce compound IntB-Q3 (38 mg, 67%).
EI-MS m/z: 698 (M+1).
Compound L-2 was synthesized by a synthetic route similar to the syntheses described in Journal of Polymer Science, Part A: Polymer Chemistry, 2012, 50(19), 3986-3995.
Preparation of Compound L-2a
Yield 30%
1H NMR (400 MHz, CDCl3) δ 7.80 (d, J=8.4 Hz, 2H), 7.34 (d, J=8.4 Hz, 2H), 4.16 (t, J=4.8 Hz, 2H), 3.74-3.58 (m, 14H), 2.45 (s, 3H).
Preparation of Compound L-2b
Yield 68%
1H NMR (400 MHz, CDCl3) δ 3.74-3.61 (m, 14H), 3.40 (t, J=4.8 Hz, 2H), 2.45 (t, J=6.0 Hz, 1H).
Preparation of Compound L-2c
Yield 63%
1H NMR (400 MHz, CDCl3) δ 4.21 (d, J=2.4 Hz, 2H), 3.72-3.67 (m, 14H), 3.39 (t, J=5.2 Hz, 2H), 2.43 (t, J=2.4 Hz, 1H).
Preparation of Compound L-2
Yield 76%
1H NMR (400 MHz, CDCl3) δ 4.20 (d, J=2.4 Hz, 2H), 3.71-3.61 (m, 12H), 3.51 (t, J=4.8 Hz, 2H), 2.87 (t, J=5.6 Hz, 2H), 2.43 (t, J=2.4 Hz, 1H).
Compound L-3 was synthesized by a synthetic route similar to the syntheses described in Journal of Organic Chemistry, 2002, 67, 5032-5035.
Preparation of Compound L-3a
Yield 92%
1H NMR (400 MHz, CDCl3) δ 10.08 (s, 1H), 7.97 (q, J=8.8 Hz, 8.8 Hz, 4H), 7.16 (brs, 1H), 4.14 (d, J=2.4 Hz, 2H), 3.70-3.62 (m, 16H), 2.41 (t, J=2.4 Hz, 1H). EI-MS m/z: 384 (M+1)
Preparation of Compound L-3b
Yield 69%
1H NMR (400 MHz, CDCl3) δ 7.82 (d, J=8.0 Hz, 2H), 7.60 (d, J=7.6 Hz, 2H), 6.88 (brs, 1H), 5.47 (brs, 1H), 4.14 (d, J=2.4 Hz, 2H), 3.70-3.63 (m, 16H), 2.42 (brs, 1H), 2.19 (s, 3H). EI-MS m/z: 404 (M+1)
Preparation of Compound L-3
Yield 81%
1H NMR (400 MHz, CDCl3) δ 8.19 (d, J=7.2 Hz, 2H), 7.92 (d, J=7.6 Hz, 2H), 7.07 (brs, 1H), 4.16 (s, 2H), 3.70-3.49 (m, 16H), 2.42 (brs, 1H), 2.19 (s, 3H). EI-MS m/z: 402 (M+1)
Compound L-4 was synthesized by a synthetic route similar to the syntheses described in Journal of Medicinal Chemistry, 52(19), 5816-5825; 2009.
Preparation of Compound L-4a
Yield 55%
1H NMR (400 MHz, CDCl3) δ 4.21 (d, J=2.0 Hz, 2H), 3.72-3.60 (m, 24H), 2.79 (brs, 1H), 2.43 (t, J=2.4 Hz, 1H).
Preparation of Compound L-4
EI-MS m/z: 400 (M+1)
Compound L-5 was synthesized via a synthetic route similar to the syntheses described in Example 44 and Example 45.
Preparation of Compound MPS-D6a
Yield 91%
1H NMR (400 MHz, CDCl3) δ 7.80 (d, J=8.4 Hz, 2H), 7.35 (d, J=8.4 Hz, 2H), 4.16 (t, J=4.8 Hz, 2H), 3.70-3.61 (m, 20H), 3.39 (t, J=4.8 Hz, 2H), 2.45 (s, 3H). EI-MS m/z: 462 (M+1)
Preparation of Compound MPS-D6b
Yield 93%; EI-MS m/z: 610 (M+1)
Preparation of Compound MPS-D6c
Yield 54%. EI-MS m/z: 584 (M+1)
Preparation of Compound MPS-D6
Yield 72%; EI-MS m/z: 899 (M+1)
Compound MPS-D7 was synthesized via a synthetic route similar to the syntheses described in Example 28.
Yield 80%; EI-MS m/z: 546 (M+1)
1H NMR (400 MHz, CDCl3) δ 8.11-7.94 (m, 4H), 7.83 (d, J=7.6 Hz, 2H), 7.44 (brs, 1H), 7.38 (d, J=8.0 Hz, 2H), 4.15 (s, 2H), 3.69-3.65 (m, 14H), 3.58-3.48 (m, 4H), 2.80 (s, 1H), 2.46 (s, 3H).
Preparation of Compound IntB-Q10-1
Compound IntB-Q10-1 was synthesized via a synthetic route similar to the syntheses described in Mol. Pharmaceutics 2015, 12, 1813-1835.
Preparation of Compound IntB-Q10-2
Compound IntB-Q10-2 was synthesized via a synthetic route similar to the syntheses described in Angew. Chem. Int. Ed. 2010, 49, 7336-7339, and International Patent Application Publication WO 2015/110935A1, which is incorporated herein by reference in its entirety.
Preparation of Compound IntB-Q10-3
To a solution of compound IntB-Q10-1 (80 mg, 0.239 mmol) and compound IntB-Q10-2 (118 mg, 0.239 mmol) in DCM (10 mL) was added molecular sieve and BF3.OEt2 (14.8 μL, 0.12 mmol) at 0° C. under N2 atmosphere. After stirring for 2 hours, the mixture was filtered through Celite®, washed with DCM (50 mL), and concentrated under reduced pressure. The residue was purified by column chromatography to provide compound IntB-Q10-3 (105 mg, 66%) as a white foam.
1H NMR (400 MHz, CDCl3) δ 8.12 (d, J=8.0 Hz, 1H), 7.89 (brs, 1H), 7.63 (d, J=8.0 Hz, 1H), 7.50 (m, 1H), 7.35 (m, 1H), 5.70 (m, 1H), 5.51 (s, 1H), 5.33 (m, 1H), 5.20 (m, 1H), 4.23 (m, 3H), 4.11 (m, 2H), 3.93 (m, 2H), 3.42 (t, J=10.8 Hz, 1H), 2.18 (s, 3H), 2.08 (s, 3H), 2.04 (s, 3H), 2.00 (s, 3H), 1.55 (s, 9H). EI-MS m/z: 564.4 (M+1).
Preparation of Compound IntB-Q10-4
Compound IntB-Q10-3 (100 mg, 0.15 mmol) was dissolved in DCM (2 mL) and then 4N HCl in 1,4-dioxane (1 mL) was added to the solution at 0° C. under N2 atmosphere. After stirring for 4 hours, the reaction mixture was concentrated under reduced pressure.
The reaction mixture was stirred at room temperature for 4 hours under N2. Compound IntB-Q10-4 was used directly in the next step without further purification (90 mg, 99%).
EI-MS m/z: 564.2 (M+1).
Preparation of Compound IntB-Q10
To a solution of compound IntB-Q10-4 (90 mg, 0.149 mmol) in THF (5 mL) was added glutaric anhydride (18.8 μL, 0.164 mmol), Et3N (52 μL, 0.373 mmol) and 4-DMAP (2 mg, 0.015 mmol) at room temperature under N2 atmosphere. The reaction mixture was stirred at room temperature for 2 hours and purified by Prep-HPLC, giving compound IntB-Q10 (30 mg, 30%) as a white solid.
EI-MS m/z: 678.3 (M+1).
Compound IntB-Q13 was synthesized via a synthetic route similar to the syntheses described in Mol. Pharmaceutics 2015, 12, 1813-1835.
Compound IntB-Q14 was synthesized via a synthetic route similar to the syntheses described in International Patent Application Publication WO 2015/038426A1, the entire contents of which are incorporated herein by reference.
Preparation of Compound IntB-Q15-1
To a solution of compound IntB-Q10-1 (55 mg, 0.016 mmol) in DCM (2 mL) was added acetyl chloride (26.8 μL, 0.032 mmol) and pyridine (30 μL, 0.032 mmol) at 0° C. under N2 atmosphere. After stirring for 30 minutes, the reaction was warmed up to room temperature and further stirred for 1 hour. The mixture was diluted with EA (20 mL) and washed with H2O (10 mL). Compound IntB-Q15-1 (50 mg, 80%) was isolated as a pale yellow foam.
EI-MS m/z: 398.2 (M+1+Na).
1H NMR (400 MHz, CDCl3) δ 8.02 (brs, 1H) 7.79 (d, J=8.0 Hz, 1H), 7.72 (t, J=8.8 Hz, 1H), 7.51 (m, 1H), 7.38 (m, 1H), 4.16 (m, 1H), 4.04 (m, 1H), 3.92 (m, 1H), 3.71 (m, 1H), 3.36 (m, 1H), 2.27, (s, 3H), 1.54 (s, 9H).
Preparation of Compound IntB-Q15
Compound IntB-Q15 was synthesized via a synthetic route similar to the synthesis described in Example 55.
Yield 99%; EI-MS m/z: 276.2 (M+1).
CBI dimer was synthesized via a synthetic route similar to the syntheses described in International Patent Application Publication WO 2015/110935A.
seco-DUBA was synthesized via a synthetic route similar to the syntheses described in Mol. Pharmaceutics 2015, 12, 1813-1835.
seco-CBI-indole was synthesized via a synthetic route similar to the syntheses described in ChemMedChem 2008, 3, 1946-1955.
Boc-L-tyrosine (2 g, 7.1 mmol) and methylamine hydrochloride (575.3 mg, 8.5 mmol) were dissolved in DMF (20 mL) under a nitrogen atmosphere. 4-DMAP (433 mg, 3.55 mmol) and DCC (2.2 g, 10.65 mmol) were added thereto at room temperature. The mixture was stirred at room temperature for 3 hours. After the reaction was completed, EA (30 mL×3), H2O (20 mL) were added to perform extraction, and the obtained organic layers was dried over anhydrous Na2SO4, filtered, and concentrated under reduced pressure. The residue was purified by column chromatography to obtain compound IntA-Q11 (1.27 g, 60%).
1H NMR (600 MHz, CDCl3) δ 6.94 (d, J=8.4 Hz, 2H), 6.57 (d, J=8.4 Hz, 2H), 3.95-3.91 (m, 1H), 2.74 (dd, J=13.8 Hz, 1H), 2.56-2.52 (m, 1H), 2.51 (d, J=4.8 Hz, 3H), 1.25 (s, 9H).
EI-MS m/z: 317.24 (M++Na).
Preparation of Compound IntA-012a
Molecular sieves (15 g) were placed in a round bottom flask, heated, and dried under reduced pressure. Compound Int-TG (5.0 g, 12.16 mmol), molecular sieves, and salicylaldehyde (1.3 mL, 12.16 mmol) were added to acetonitrile (75 mL). Ag2O (8.45 g, 36.48 mmol) was added to the mixture, and the mixture was stirred at room temperature for 3 hours under a nitrogen atmosphere. After the reaction was completed, the mixture was filtered through a pad of Celite®, and then the filtrate was concentrated. The residue was purified by column chromatography to obtain compound IntA-Q12a (4.1 g, 75%).
Preparation of Compound IntA-012b
To a solution of compound IntA-Q12a (4.1 g, 9 mmol) in 2-propanol (15 mL) and CHCl3 (75 mL) was added silica gel (4 g) and NaBH4 (681 mg, 18 mmol) at 0° C. under a nitrogen atmosphere. And the reaction was stirred at 0° C. for 4 hours under a nitrogen atmosphere. After the reaction was completed, H2O (100 mL) and EA (100 mL×3) were added to the mixture, and the organic layer was dried over anhydrous Na2SO4, filtered, and concentrated under reduced pressure. The residue was purified by column chromatography to obtain compound IntA-Q12b (3.8 g, 93%) as a white solid.
1H NMR (600 MHz, CDCl3) δ 7.34 (dd, J=7.8 Hz, 1H), 7.29 (dd, J=8.4 Hz, 1H), 7.09 (t, J=7.2 Hz, 1H), 7.02 (d, J=7.8 Hz, 1H), 5.53 (dd, J=10.8 Hz, 1H), 5.47 (d, J=3.6 Hz, 1H), 5.14 (dd, J=10.2 Hz, 1H), 5.08 (d, J=7.8 Hz, 1H), 4.66 (dd, J=12.6 Hz, 1H), 4.58 (dd, J=13.2 Hz, 1H), 4.22 (dd, J=10.8 Hz, 1H), 4.16 (dd, J=12.0 Hz, 1H), 4.07 (t, J=7.2 Hz, 1H), 2.22 (s, 3H), 2.11 (s, 3H), 2.06 (s, 3H), 2.01 (s, 3H).
EI-MS m/z: 477.21 (M++Na).
Preparation of Compound IntA-012c
To a solution of compound IntA-Q12b (1.25 g, 2.75 mmol) in anhydrous DCM (27 mL) was added DIPEA (1.44 mL, 8.25 mmol) and methanesulfonyl chloride (0.43 mL, 5.5 mmol) at 0° C. under a nitrogen atmosphere. The reaction was stirred at 0° C. for 20 minutes. After the reaction was completed, H2O (20 mL) and DCM (20 mL×3) were added to perform extraction, and the organic layer was dried over anhydrous Na2SO4, filtered, and concentrated under reduced pressure. Compound IntA-Q12c (1.46 g, 100%) was used directly in the next reaction without purification.
Preparation of Compound IntA-012d
To a solution of compound IntA-Q12c (1.46 g, 2.75 mmol) in ACN (27 mL) was added potassium thioacetate (409 mg, 3.58 mmol) at room temperature under a nitrogen atmosphere. The reaction was stirred at room temperature for 4 hours. After the reaction was completed, EA (30 mL×3) and 2N HCl aqueous solution (1.8 mL, 3.6 mmol) were added. The obtained organic layer was dried over anhydrous Na2SO4, filtered, and concentrated under reduced pressure. The residue was purified by column chromatography to obtain compound IntA-Q12d (1.27 mg, 90%).
1H NMR (600 MHz, CDCl3) δ 7.38 (d, J=7.8 Hz, 1H), 7.21 (t, J=7.8 Hz, 1H), 7.01 (dd, J=14.4 Hz, 2H), 5.55 (t, J=7.8 Hz, 1H), 5.47 (dd, J=3.0 Hz, 1H), 5.13 (dd, J=10.8 Hz, 1H), 5.08 (d, J=8.4 Hz, 1H), 4.25 (dd, J=11.4 Hz, 1H), 4.18-4.05 (m, 4H), 2.32 (s, 3H), 2.20 (s, 3H), 2.13 (s, 3H), 2.05 (s, 3H), 2.03 (s, 3H).
EI-MS m/z: 535.18 (M++Na).
Preparation of Compound IntA-012e
To a solution of compound IntA-Q12d (230 mg, 0.45 mmol) in ACN (4.5 mL) and 2N HCl (0.9 mL, 1.8 mmol) was added N-chlorosuccinimide (240 mg, 1.8 mmol) at 0° C. under a nitrogen atmosphere. After the reaction was stirred at 0° C. for 1 hour, H2O (5 mL) and diisopropyl ether (5 mL×3) were added to perform extraction. The obtained organic layer was dried over anhydrous Na2SO4, filtered, and concentrated under reduced pressure. Compound IntA-Q12e (241 mg, crude) used directly in the next reaction without purification.
Preparation of Compound IntA-012f
Compound IntA-Q12e (241 mg, 0.45 mmol) and compound IntA-Q11 (133 mg, 0.45 mmol) were dissolved in anhydrous DCM (5 mL) and TEA (0.19 mL, 1.35 mmol) was added thereto at 0° C. under a nitrogen atmosphere. After the mixture was stirred at room temperature for 1 hour, H2O (5 mL) and EA (10 mL×3) were added. The obtained organic layer was dried over anhydrous Na2SO4, filtered, and concentrated under reduced pressure. The residue was purified by column chromatography to obtain a compound IntA-Q12f (53 mg, 15%).
1H NMR (600 MHz, CDCl3) δ 7.51 (d, J=7.8 Hz, 1H), 7.37 (t, J=8.4 Hz, 1H), 7.21-7.20 (m, 2H), 7.12-7.09 (m, 4H), 5.93 (s, 1H), 5.55-5.52 (m, 1H), 5.48 (d, J=3 Hz, 1H), 5.18 (d, J=8.4 Hz, 1H), 5.14 (dd, J=10.2 Hz, 1H), 5.09 (brs, 1H), 4.86 (d, J=13.8 Hz, 1H), 4.34 (d, J=14.4 Hz, 1H), 4.30-4.23 (m, 1H), 4.14 (dd, J=9.6 Hz, 1H), 4.12-4.10 (m, 2H), 3.09-3.01 (m, 2H), 2.73 (d, J=3.6 Hz, 3H), 2.20 (s, 3H), 2.09 (s, 3H), 2.05 (s, 3H), 2.00 (s, 3H), 1.41 (s, 9H).
EI-MS m/z: 795.35 (M++1).
Preparation of Compound IntA-012
To a solution of compound IntA-Q12f (53 mg, 0.067 mmol) in MeOH (1.5 mL) was added 0.5 M sodium methoxide in methanol (0.67 mL, 0.335 mmol) at 0° C. under a nitrogen atmosphere. After the reaction mixture was stirred at 0° C. for 20 minutes, 2N HCl aqueous solution (0.17 mL, 0.335 mmol) was added. The residue was subjected to Prep-HPLC to obtain compound IntA-Q12 (21.1 mg, 50%).
1H NMR (600 MHz, DMSO) δ 7.84 (d, J=4.8 Hz, 1H), 7.43 (d, J=7.2 Hz, 1H), 7.38 (t, J=7.2 Hz, 1H), 7.29 (d, J=8.4 Hz, 2H), 7.23 (d, J=7.8 Hz, 1H), 7.15 (d, J=7.8 Hz, 2H), 7.07 (t, J=7.2 Hz, 1H), 6.94 (d, J=8.4 Hz, 1H), 5.19 (d, J=13.8 Hz, 1H), 4.84 (d, J=14.4 Hz, 1H), 4.72 (d, J=7.8 Hz, 1H), 4.10-4.06 (m, 1H), 3.72 (brs, 1H), 3.66-3.53 (m, 5H), 3.43-3.41 (m, 4H), 2.93 (dd, J=13.8 Hz, 1H), 2.73 (t, J=10.2 Hz, 1H), 2.57 (d, J=4.2 Hz, 3H), 1.29 (s, 9H).
EI-MS m/z: 627.30 (M++1).
Preparation of Compound Int-A2-1
To a solution of compound Int-TG (1 g, 2.43 mmol) and 4-hydroxybenzaldehyde (297 mg, 2.43 mmol) in anhydrous ACN (15 mL) were added molecular sieves (3 g) and Ag2O (1.7 g, 7.29 mmol) at room temperature under a nitrogen atmosphere. The reaction mixture was stirred at room temperature for 3 hours, then filtered through Celite®. The organic layer was dried over Na2SO4. The mixture was filtered, and concentrated under reduced pressure. The residue was purified by column chromatography to provide compound Int-A2-1 (1.05 g, 95%).
1H NMR (600 MHz, CDCl3) δ 9.93 (s, 1H), 7.86 (d, J=7.2 Hz, 1H), 7.12 (d, J=7.8 Hz, 1H), 5.54 (t, J=9 Hz, 1H), 5.48 (d, J=3 Hz, 1H), 5.17 (d, J=7.8 Hz, 1H), 5.15 (dd, J=10.8, 3 Hz, 1H), 4.25 (m, 1H), 4.18-4.11 (m, 2H), 2.19 (s, 3H), 2.07 (s, 6H), 2.02 (s, 3H).
Preparation of Compound Int-A2
To a solution of compound Int-A2-1 (1.05 g, 2.32 mmol) in 2-propanol (4 mL) and CHCl3 (24 mL) was added silica gel (2 g) and NaBH4 (209 mg, 5.8 mmol) at 0° C. under a nitrogen atmosphere. After the reaction mixture was stirred at 0° C. for 4 hours, H2O (30 mL) and EA (30 mL×3) were added to perform extraction, and the organic layer was dried over anhydrous Na2SO4, filtered, and concentrated under reduced pressure. The residue was purified by column chromatography to obtain compound Int-A2 (977 mg, 93%).
1H NMR (600 MHz, CDCl3) δ 7.31 (d, J=9 Hz, 1H), 7.00 (d, J=9 Hz, 1H), 5.50 (m, 1H), 5.46 (d, J=2.4 Hz, 1H), 5.12 (dd, J=10.2, 3.6 Hz, 1H), 5.04 (d, J=7.8 Hz, 1H), 4.65 (s, 2H), 4.23 (m, 1H), 4.18-4.11 (m, 2H), 4.047 (t, J=6 Hz, 1H), 2.18 (s, 3H), 2.07 (s, 3H), 2.06 (s, 3H), 2.01 (s, 3H).
Preparation of Compound Int-A3-1
To a solution of compound 5-formylsalicylic acid (10 g, 60.1 mmol) in THF (120 mL) were added DIPEA (31 mL) and benzyl bromide (7.15 mL, 60.1 mmol) at 0° C. under a nitrogen atmosphere. And the reaction was heated at 60° C. for 18 hours. After the reaction was completed, 2N HCl (200 mL) and EA (200 mL×3) were added to perform extraction, and the organic layer was dried over anhydrous Na2SO4, filtered, and concentrated under reduced pressure. The residue was purified by column chromatography to provide compound Int-A3-1 (11.2 g, 73%).
1H NMR (600 MHz, CDCl3) δ 11.38 (s, 1H), 9.86 (s, 1H), 8.40 (s, 1H), 8.01 (d, J=9 Hz, 1H), 7.47 (d, J=7.8 Hz, 2H), 7.43-7.39 (m, 3H), 7.11 (d, J=8.4 Hz, 1H), 5.43 (s, 2H).
Preparation of Compound Int-A3-2
Compounds Int-A3-1 (2 g, 7.8 mmol) and Int-TG (3.2 g, 7.8 mmol) were reacted in a similar manner to the preparation method of compound Int-A2-1 of Example 27, thereby obtaining a compound Int-A3-2 (4.13 g, 90%).
Preparation of Compound Int-A3-3
Compound Int-A3-2 (4.13 g, 7.0 mmol) was reacted in a similar manner to the preparation method of the compound Int-A2 of Example 27, thereby obtaining compound Int-A3-3 (3.93 g, 95%).
1H NMR (600 MHz, CDCl3) δ 7.73 (s, 1H), 7.46 (m, 3H), 7.39-7.31 (m, 3H), 7.19 (d, J=8.4 Hz, 1H), 5.59 (t, J=10.2 Hz, 1H), 5.46 (d, J=3.6 Hz, 1H), 5.35-5.29 (m, 2H), 5.11 (dd, J=10.2, 2.4 Hz, 1H), 5.06 (d, J=8.4 Hz, 1H), 4.66 (d, J=6 Hz, 1H), 4.25-4.04 (m, 4H), 2.17 (s, 3H), 2.06 (s, 3H), 2.04 (s, 3H), 2.01 (s, 3H).
Preparation of Compound Int-A3
Compound Int-A3-3 (1.35 g, 2.29 mmol) was dissolved in EtOH (80 mL), Pd/C (135 mg, 10 wt %) was added thereto, and the mixture was stirred for 3 hours while injecting H2 gas at the room temperature. After the reaction was completed, the mixture was filtered through Celite®, and then concentrated under reduced pressure. After concentration, the residue was purified by column chromatography to obtain compound Int-A3 (676 mg, 47%).
1H NMR (600 MHz, CDCl3) δ 7.90 (s, 1H), 7.46 (m, 1H), 7.13 (d, J=7.2 Hz, 1H), 5.56 (t, J=8.4 Hz, 1H), 5.47 (s, 1H), 5.16 (m, 2H), 4.63 (s, 2H), 4.23 (m, 1H), 4.16 (m, 2H), 2.16 (s, 3H), 2.08 (s, 3H), 2.05 (s, 3H), 2.01 (s, 3H).
Preparation of Compound A-1-1
To a solution of compound Int-A2 (977 mg, 2.15 mmol) in anhydrous DCM (20 nmL) were added TEA (899 μL, 6.45 mmol) and methane-sulfonyl chloride (333 μL, 4.30 mmol) at 0° C. under a nitrogen atmosphere. After the reaction mixture was stirred at 0° C. for 3 hours, H2O (20 mL) and DCM (20 mL×3) were added to perform extraction, and the organic layer was dried over anhydrous Na2SO4, filtered, and concentrated under reduced pressure. Compound A-1-1 (1.15 g, crude) was used directly in the next reaction without purification.
Preparation of Compound A-1-2
To a solution of compound A-1-1 (1.15 g, 2.15 mmol) in ACN (20 mL) was added potassium thioacetate (282 mg, 2.47 mmol) at room temperature under a nitrogen atmosphere. After the reaction mixture was stirred at room temperature for 2 hours, EA (20 mL×3) and 2N HCl aqueous solution (2.5 nmL, 4.94 mmol) were added thereto. The obtained organic layer was dried over anhydrous Na2SO4, filtered, and concentrated under reduced pressure. The residue was purified by column chromatography to obtain compound A-1-2 (361 mg, 32%).
1H NMR (600 MHz, CDCl3) δ 7.22 (d, J=8.4 Hz, 1H), 6.93 (d, J=8.4 Hz, 1H), 5.48-5.44 (m, 2H), 5.10 (dd, J=10.8, 3.6 Hz, 1H), 5.10 (d, J=7.8 Hz, 1H), 4.23-4.15 (m, 2H), 4.07 (s, 2H), 4.05 (t, J=6.6 Hz, 1H), 2.34 (s, 3H), 2.18 (s, 3H), 2.06 (s, 6H), 2.01 (s, 3H); EI-MS m/z: 535.30 (M+1+Na).
Preparation of Compound A-1-3
To a solution of compound A-1-2 (160 mg, 0.31 mmol) in ACN (2.5 mL) and 2N HCl (0.62 mL, 1.25 mmol) was added N-chlorosuccinimide (166 mg, 1.25 mmol) at 0° C. under a nitrogen atmosphere. After the reaction was stirred at 0° C. for 1 hour, H2O (5 mL) and diisopropyl ether (5 mL×5) were added to perform extraction. The obtained organic layer was dried over anhydrous Na2SO4, filtered, and concentrated under reduced pressure. Compound A-1-3 (252 mg, crude) was used directly in the next reaction without purification.
Preparation of Compound A-1-4
Compound A-1-3 (50 mg, 0.06 mmol) and compound Int-A1 (18 mg, 0.06 mmol) were dissolved in anhydrous DCM (1 mL) and TEA (17 μL, 0.12 mmol) was added thereto at 0° C. under a nitrogen atmosphere. After the mixture was stirred at room temperature for 1 hour, H2O (5 mL) and EA (5 mL×3) were added. The obtained organic layer was dried over anhydrous Na2SO4, filtered, and concentrated under reduced pressure. The residue was subjected to prep-HPLC to obtain compound A-1-4 (17.1 mg, 35%).
1H NMR (600 MHz, CDCl3) δ 7.39 (d, J=8.4 Hz, 1H), 7.22 (d, J=8.4 Hz, 1H), 7.09 (d, J=8.4 Hz, 1H), 7.05 (d, J=8.4 Hz, 1H), 5.90 (brs, 1H), 5.51-5.46 (m, 2H), 5.30 (s, 1H), 5.14 (dd, J=10.8, 3 Hz, 1H), 5.09 (d, J=8.14 Hz, 1H), 5.07 (brs, 1H), 4.46 (s, 2H), 4.28-4.22 (m, 2H), 4.17-4.08 (m, 3H), 3.07-3.03 (m, 2H), 2.74 (d, J=4.2 Hz, 3H), 2.19 (s, 3H), 2.07 (s, 3H), 2.05 (s, 3H), 2.02 (s, 3H), 1.39 (s, 9H).
EI-MS m/z: 795.51 (M+1).
Preparation of Compound A-1
To a solution of compound A-1-4 (10 mg, 0.0013 mmol) in MeOH (1 mL) was added 0.5 M sodium methoxide in methanol (0.13 mL, 0.063 mmol) at 0° C. under a nitrogen atmosphere. After the reaction mixture was stirred at 0° C. for 10 minutes, the reaction was adjusted to have pH of 3 to 4 with 2N HCl aqueous solution (31 μL, 0.063 mmol). The residue was purified by Prep-HPLC to obtain compound A-1 (1 mg, 13%).
EI-MS m/z: 627.47 (M+1).
Preparation of Compound A-2-1
Compound Int-A3 (510 mg, 1.02 mmol) and 11-azido-3,6,9-trioxaundecan-1-amine (284 mg, 1.12 mmol) were dissolved in DMF (6 mL). PyBOP (629 mg, 1.33 mmol) and DIPEA (0.44 mL, 2.55 mmol) were added thereto at 0° C. under a nitrogen atmosphere. After the reaction mixture was stirred at room temperature for 1.5 hours, H2O (30 nmL) and EA (20 mL×3) were added to perform extraction, and the organic layer was dried over anhydrous Na2SO4, filtered, and concentrated under reduced pressure. The residue was purified by column chromatography to provide compound A-2-1 (456 mg, 64%).
1H NMR (600 MHz, CDCl3) δ 8.05 (d, J=2.4 Hz, 1H), 7.57 (t, J=5.4 Hz, 1H), 7.47 (dd, J=8.4, 2.4 Hz, 1H), 7.06 (d, J=9 Hz, 1H), 5.54-5.49 (m, 2H), 5.24 (d, 8.4 Hz, 1H), 5.19 (dd, 10.2, 3.6 Hz, 1H), 4.64 (s, 2H), 4.24-4.09 (m, 3H), 3.79-3.62 (m, 14H), 3.55 (m, 1H), 3.43 (m, 2H), 2.21 (s, 3H), 2.07 (s, 3H), 2.04 (s, 3H), 2.02 (s, 3H).
Compound A-2-2, compound A-2-3, compound A-2-4, compound A-2-5 and compound A-2 were synthesized via synthetic routes similar to the syntheses described in Example 29.
Preparation of Compound A-2-3
1H NMR (600 MHz, CDCl3) δ 8.05 (s, 1H), 7.59 (brs, 1H), 7.39 (d, J=7.2 Hz, 1H), 6.96 (d, J=9 Hz, 1H), 5.54-5.49 (m, 2H), 5.17 (m, 2H), 4.25 (m, 1H), 4.15 (m, 4H), 3.80 (m, 1H), 3.70-3.63 (m, 14H), 3.54 (m, 4H), 2.34 (s, 3H), 2.12 (s, 3H), 2.06 (s, 6H), 2.02 (s, 3H); EI-MS m/z: 757.46 (M+1).
Preparation of Compound A-2-4
EI-MS m/z: 781.30 (M+1).
Preparation of Compound A-2-5
EI-MS m/z: 1039.47 (M+1).
Preparation of Compound A-2
EI-MS m/z: 871.50 (M+1).
To a solution of Int-A1 (200 mg, 0.68 mmol) in DMF (5 mL) were added imidazole (138 mg, 2.03 mmol) and TBDMSCl (123 mg, 0.815 mmol) at 0° C. under a nitrogen atmosphere. After the reaction mixture was stirred at room temperature for 3 hours, EA (50 mL) and brine (100 mL) were added to perform extraction, and the obtained organic layer was dried over anhydrous Na2SO4, filtered, and concentrated under reduced pressure. The residue was purified by column chromatography to provide compound Int-B1 (250 mg, 90%/).
1H NMR (600 MHz, CDCl3) δ 7.04 (d, J=8.4 Hz, 2H), 6.76 (d, J=8.4 Hz, 2H), 5.63 (brs, 1H), 5.30 (brs, 1H), 4.20 (m, 1H), 3.03-2.91 (m, 2H), 2.71 (d, J=4.2 Hz, 3H), 1.41 (s, 9H), 0.97 (s, 9H), 0.18 (s, 6H).
To a solution of compound A-1-3 (250 mg, 0.46 mmol) in ACN (2 ml) was added KHF2 (73 mg, 0.92 mmol) in H2O (0.5 ml) at room temperature. After the reaction was stirred at the same temperature for 2 hours, EA (50 mL) and brine (50 mL) were added to perform extraction, and the organic layer was dried over anhydrous Na2SO4, filtered, and concentrated under reduced pressure. The residue was purified by column chromatography to provide compound Int-B2 (173 mg, 68%).
1H NMR (600 MHz, CDCl3) δ 7.36 (d, J=8.4 Hz, 2H), 7.05 (d, J=8.4 Hz, 2H), 5.52-5.46 (m, 2H), 5.13-5.07 (m, 2H), 4.56 (s, 2H), 4.25-4.07 (m, 4H), 2.19 (s, 3H), 2.07 (s, 3H), 2.06 (s, 3H), 2.02 (s, 3H); EI-MS m/z: 543.23 (M+1+Na).
To a solution of 4-hydroxybenzaldehyde (1 g, 8.18 mmol) in DCM (20 mL) was added imidazole (1.67 g, 24.54 mmol) and TBDMSCl (1.85 g, 12.27 mmol) at 0° C. under a nitrogen atmosphere. After the reaction was stirred at room temperature for 1.5 hours, EA (100 mL) and brine (100 mL) were added to perform extraction, and then the organic layer was dried over anhydrous Na2SO4, filtered, and concentrated under reduced pressure. The residue was purified by column chromatography to provide compound Int-B3 (1.8 g, 93%).
1H NMR (600 MHz, CDCl3) δ 9.89 (s, 1H), 7.78 (d, J=8.4 Hz, 2H), 6.94 (d, J=8.4 Hz, 2H), 0.99 (s, 9H), 0.25 (s, 6H).
Preparation of Compound Int-B4-1
To a solution of D-pipecolinic acid (10 g, 77.42 mmol) in MeOH (400 mL) was added paraformaldehyde (4.66 g, 154.8 mmol) and Pd/C (1.65 g, 5 wt %, 15.48 mmol) at room temperature, and the mixture was stirred at the same temperature for 16 hours while injecting H2 gas. After the reaction was completed, the mixture was filtered through Celite®, and then concentrated under reduced pressure. After concentration, compound Int-B2-1 was used directly in the next reaction without purification (11.37 g, quant.)
EI-MS m/z: 144 (M+1).
Preparation of Compound Int-B4
To a solution of compound Int-B2-1 (1 g, 6.98 mmol) and aniline (0.7 mL, 7.68 mmol) in DMF (10 mL) was added DIC (1.3 mL, 8.38 mmol) and DMAP (171 mg, 1.4 mmol) at 0° C. under a nitrogen atmosphere. After stirring overnight, the reaction mixture was diluted H2O (30 mL) and extracted with EA (2×30 mL). The combined organic layers were dried over anhydrous Na2SO4, filtered, and concentrated under reduced pressure. The residue was purified by column chromatography to provide compound Int-B4 (870 mg, 58%).
1H-NMR (600 MHz, CDCl3) δ 8.52 (s, 1H), 7.58-7.52 (m, 2H), 7.34-7.28 (m, 2H), 7.11-7.05 (m, 1H), 2.98-2.96 (m, 1H), 2.59-2.53 (m, 1H), 2.34 (s, 3H), 2.18-2.03 (m, 2H), 1.78-1.47 (m, 5H), EI-MS m/z: 219 (M+).
Preparation of Compound B-1-1
Compound Int-B2 (170 mg, 0.32 mmol) and compound Int-B3 (92.6 mg, 0.38 mmol) were dissolved in ACN (5 mL). DBU (9.76 μL, 0.06 mmol) was added thereto at room temperature. After the reaction mixture was stirred at the same temperature for 2 hours, EA (50 mL) and brine (100 mL) were added to perform extraction, and the organic layer was dried over anhydrous Na2SO4, filtered, and concentrated under reduced pressure. The residue was purified by column chromatography to provide compound B-1-1 (60 mg, 30%/).
1H NMR (600 MHz, CDCl3) δ 10.00 (s, 1H), 7.91 (d, J=8.4 Hz, 2H), 7.39 (d, J=8.4 Hz, 2H), 7.30 (d, J=9.0 Hz, 2H), 7.04 (d, J=9.0 Hz, 2H), 5.52-5.47 (m, 2H), 5.13-5.07 (m, 2H), 4.53 (s, 2H), 4.23 (m, 1H), 4.16 (m, 1H), 4.08 (m, 1H), 2.19 (s, 3H), 2.07 (s, 3H), 2.05 (s, 3H), 2.01 (s, 3H); EI-MS mi/z: 545.19 (M+1+Na).
Perpetration of Compound B-1-2
To a solution of compound B-1-1 (60 mg, 0.096 mmol) in 2-propanol (0.4 mL) and CHCl3 (2 mL) were added silica gel (10 mg) and NaBH4 (10 mg, 0.24 mmol) at 0° C. under a nitrogen atmosphere. After the reaction mixture was stirred at 0° C. for 1.5 hours under a nitrogen atmosphere, H2O (100 mL) and EA (50 mL) were added to perform extraction and the organic layer was dried over Na2SO4, filtered, and concentrated under reduced pressure. The residue was purified by column chromatography to provide compound B-1-2 (50 mg, 83%).
EI-MS m/z: 647.18 (M+1+Na).
Preparation of Compound B-1-3
Compound B-1-2 (50 mg, 0.08 mmol) was dissolved in DCM (3 mL), and 1M PBr3 (40 μL, 0.04 mmol) dissolved in DCM was added to the solution. The resulting mixture was allowed to stir at 0° C. The reaction was allowed to warm to room temperature and stirred for 2 hours. After the reaction was completed, H2O (100 mL) and EA (50 mL) were added to perform extraction, and the organic layer was dried over Na2SO4, filtered, and concentrated under reduced pressure. The residue was purified by column chromatography to provide compound B-1-3 (24 mg, 44%).
1H NMR (600 MHz, CDCl3) δ 7.40 (m, 4H), 7.12 (d, J=8.4 Hz, 2H), 7.04 (d, J=8.4 Hz, 2H), 5.50 (m, 1H), 5.46 (m, 1H), 5.11 (m, 1H), 5.07 (d, J=8.4 Hz, 1H), 4.47 (m, 4H), 4.23 (m, 1H), 4.16 (m, 1H), 4.08 (m, 1H), 2.19 (s, 3H), 2.07 (s, 3H), 2.05 (s, 3H), 2.02 (s, 3H); EI-MS m/z: 709.05 (M+1+Na).
Preparation of Compound B-1
To a solution of compound B-1-3 (24 mg, 0.035 mmol) and Int-B4 (8.4 mg, 0.038 mmol) in DMF (1 mL) was added DIPEA (18.3 μL, 0.10 mmol) at room temperature. After the reaction mixture was stirred for 16 hours, 0.5M NaOMe (50 μL) in methanol solution was added thereto at 0° C. and additionally stirred for 15 minutes. The mixture was quenched with 0.1% formic acid in ACN (3 mL). The residue was purified by prep-HPLC, which produced compound B-1 (6.3 mg, 27%).
EI-MS m/z: 657.29 (M+1).
To a solution of A-2-3 (20.0 mg, 0.026 mmol) in ACN (0.5 mL) and 2N HCl (52.8 μL, 0.106 mmol) was added N-chlorosuccinimide (13.0 mg, 0.098 mmol) at 0° C. under N2 atmosphere. After stirring at 0° C. for 1 hour, KHF2 (16.5 mg, 0.2112 mmol) and KF (24.5 mg, 0.4224 mmol) in H2O (0.1 ml) were added, and the reaction mixture was stirred at the same temperature for 1 hour. EA (50 mL) and H2O (25 mL) were added to perform extraction, and the organic layer was dried over anhydrous Na2SO4, filtered, and concentrated under reduced pressure. The residue was purified by column chromatography to provide compound Int-B5 (13.0 mg, 65%).
1H NMR (600 MHz, CDCl3) δ 8.17 (d, J=2.8 Hz, 1H), 7.51 (dd, J=6.4, 2.4 Hz, 1H), 7.41 (t, J=6.4 Hz, 1H), 7.12 (d, J=8.8 Hz, 1H), 5.57-5.49 (m, 2H), 5.20 (d, J=8.0 Hz, 1H), 5.16 (dd, J=8.0, 3.2 Hz, 1H), 4.60 (d, J=3.2 Hz, 2H), 4.27-4.11 (m, 3H), 3.81-3.73 (m, 1H), 3.72-3.61 (m, 12H), 3.60-3.52 (m, 1H), 3.36 (t, J=4.8 Hz, 2H), 2.23 (s, 3H), 2.08 (s, 3H), 2.07 (s, 3H), 2.03 (s, 3H); EI-MS m/z: 765 (M+1).
Preparation of Compound Int-T1-a
To a solution of a-amanitin (3 mg, 0.003 mmol, CAS No. 23109-05-9) and compound Int-B5 (5.0 mg, 0.007 mmol) in ACN (0.1 mL) and DMF (5 drops) was added BEMP (0.8 uL, 0.003 mmol) at room temperature under N2 atmosphere. After stirring for 3 hours at room temperature, the reaction mixture was purified by HPLC to provide compound Int-T1-a (3.9 mg, 72%). EI-MS m/z: 1664 (M+1).
Preparation of Compound Int-T1
To a solution of Compound Int-T1-a (3.9 mg, 0.002 mmol) in MeOH (0.8 mL) and DCM (0.2 mL) was added K2CO3 (4.5 mg, 0.033 mmol) under N2 atmosphere. After stirring for 1 hour at 0° C., the reaction mixture was purified by HPLC to provide compound Int-T1 (2.8 mg, 81%).
EI-MS m/z: 1496 (M+1).
Preparation of Compound Int-B6-a
To a solution of 4-hydroxybenzaldehyde (20 g, 163.8 mmol) in DCM (1000 mL) was added TEA (45.7 mL, 327.6 mmol) at 0° C. under N2 atmosphere. After stirring at room temperature for 16 hours under N2 atmosphere, the reaction mixture was quenched with H2O (400 mL) and extracted with DCM (500 mL×3). The organic layer was dried over Na2SO4, filtered, and concentrated under reduced pressure. The residue was purified by column chromatography to provide compound Int-B6-a (33.4 g, 100%).
1H NMR (400 MHz, CDCl3) δ 10.07 (s, 1H), 8.06-8.02 (m, 2H), 7.56-7.52 (m, 2H).
Preparation of Compound Int-B6-b
To a solution of compound Int-B6-a (5 g, 24.49 mmol) in MeOH (40 mL) and THF (245 mL) was added NaBH4 (1.85 g, 48.98 mmol) at −78° C. under N2 atmosphere. After stirring at 0° C. for 1 hour, the reaction mixture was quenched by addition of 2N HCl (5 mL) and extracted with H2O (250 mL) and EA (250 mL×3). The organic layer was dried over Na2SO4, filtered, and concentrated under reduced pressure. The residue was purified by column chromatography to provide compound Int-B6-b (5.01 g, 99%).
1H NMR (400 MHz, CDCl3) δ 7.50-7.46 (m, 2H), 7.34-7.31 (m, 2H), 4.75 (d, J=5.6 Hz, 2H), 1.90 (t, J=5.6 Hz, 1H).
Preparation of Compound Int-B6
To a solution of compound Int-B6-b (2 g, 9.7 mmol) in ether (32 mL) was added 1.0 M PBr3 in DCM (3.88 mL, 3.88 mmol) at 0° C. under N2 atmosphere. After stirring for 2 hours ether (100 mL) and NaHCO3 (100 mL×3) were added to perform extraction. The organic layer was dried over Na2SO4, filtered, and concentrated under reduced pressure. The residue was purified by column chromatography to provide compound Int-B6 (2.35 g, 90%).
1H NMR (400 MHz, CDCl3) δ 7.52-7.49 (m, 2H), 7.34-7.31 (m, 2H), 4.49 (s, 2H).
Preparation of Compound Int-B7-a
To a solution of 4-hydroxyisophathalaldehyde (112 mg, 0.746 mmol, CAS No: 3328-70-9) and sodium hydride (45 mg, 1.12 mmol, 60%) in DMF (5 mL) was added compound Int-B6 (280 mg, 0.97 mmol) in DMF (2 mL) at 0° C. under N2 atmosphere. After stirring at room temperature for 4 hours under N2 atmosphere, the reaction mixture was quenched by the addition of H2O (10 mL) and extracted with H2O (100 mL) and EA (100 mL×2). The organic layer was dried over Na2SO4, filtered, and concentrated under reduced pressure. The residue was purified by column chromatography to provide compound Int-B7-a (180 mg, 71%) as a white solid.
1H NMR (400 MHz, CDCl3) δ 10.54 (s, 1H), 9.98 (s, 1H), 8.38 (d, J=2.4 Hz, 1H), 8.14 (dd, J=2.0, 8.8 Hz, 1H), 7.60 (d, J=9.2 Hz, 2H), 7.43 (d, J=8.8 Hz, 2H), 7.19 (d, J=8.8 Hz, 1H), 5.33 (s, 2H).
Preparation of Compound Int-B7
To a solution of compound Int-B7-a (1 g, 2.96 mmol) in THF (8 mL) was added sodium borohydride (391 mg, 10.35 mmol) in MeOH (1.5 mL) and THF (1 mL) at −78° C. under N2 atmosphere. The reaction mixture was stirred at 0° C. for 1 hour under N2 atmosphere. After the reaction was completed, the mixture was quenched with 2N HCl (2 mL) and extracted with H2O (100 mL) and EA (100 mL×3). The organic layer was dried over Na2SO4, filtered, and concentrated under reduced pressure. The residue was purified by column chromatography to provide compound Int-B7 (850 mg, 85%) as a white solid.
1H NMR (400 MHz, CDCl3) δ 7.55 (d, J=8.8 Hz, 2H), 7.39-7.37 (m, 3H), 7.30-7.28 (m, 1H), 6.89 (d, J=8.4 Hz, 1H), 5.16 (s, 2H), 4.76 (d, J=6.0 Hz, 2H), 4.65 (d, J=5.6 Hz, 2H).
Preparation of Compound Int-B8-1
To a solution of the 3-formyl-4-hydroxybenzoic acid (5 g, 43.06 mmol) in DMF (100 mL) was added benzyl bromide (5.1 mL, 43.06 mmol) and NaHCO3 (2.53 g, 43.06 mmol) at room temperature under N2 atmosphere. The mixture was stirred overnight at room temperature under N2 atmosphere. EA (200 mL×2) and distilled water (100 mL) were added to perform extraction. The obtained organic layer was dried over anhydrous Na2SO4, filtered, and concentrated under reduced pressure. The residue was purified by column chromatography to provide compound Int-B8-1 (2.56 g, 39%).
1H NMR (400 Hz, CDCl3) δ 11.41 (s, 1H), 9.95 (s, 1H), 8.34 (d, J=2.0 Hz, 1H), 8.23 (dd, J=6.4 Hz, 2.4 Hz, 1H), 7.46-7.35 (m, 5H), 7.04 (d, J=9.2 Hz, 1H), 5.37 (s, 2H).
Preparation of Compound Int-B8-2
To a solution of compound Int-B8-1 (1.0 g, 3.90 mmol) and Int-TG (1.6 g, 3.90 mmol) in anhydrous ACN (30 mL) were added molecular sieves (8 g) and Ag2O (3.62 g, 15.61 mmol) at room temperature under N2 atmosphere. The mixture was stirred at room temperature for 1 hour. After the reaction was completed, the mixture was filtered through Celite® and washed with DCM (20 mL). The filtrate was concentrated under reduced pressure. The residue was purified by column chromatography to provide compound Int-B8-2 (2.1 g, 92%).
1H NMR (400 Hz, CDCl3) δ 10.34 (s, 1H), 8.55 (d, J=2.0 Hz, 1H), 8.26 (dd, J=6.8, 2.0 Hz, 1H), 7.45-7.35 (m, 5H), 7.17 (d, J=8.8 Hz, 1H), 5.63-5.60 (m, 1H), 5.50 (d, J=3.6 Hz, 1H), 5.37 (s, 2H), 5.23 (d, J=8.0 Hz, 1H), 5.16 (dd, J=7.2, 3.6 Hz, 1H) 4.24-4.10 (m, 4H), 2.20 (s, 3H), 2.10-2.03 (m, 9H).
Preparation of Compound Int-B8
To a solution of compound Int-B8-2 (2.1 g, 3.58 mmol) in DCM (30 mL) was added m-CPBA (2.65 g, 10.74 mmol) at 0° C. under N2 atmosphere. After stirring for 7 hours at 0° C., the mixture was quenched by addition of saturated sodium bicarbonate solution (40 mL×2). The organic layer was washed with brine, dried over Na2SO4, filtered, and concentrated under reduced pressure. The residue was dissolved in DCM (5 mL) and hydrazine hydrate (261 μL, 5.37 mmol) was added at 0° C. under N2 atmosphere. After stirring at 0° C. for 1 hour, EA (30 mL×2) and 1M HCl aqueous solution (10 mL) were added to perform extraction. The obtained organic layer was dried over anhydrous Na2SO4, filtered, and concentrated under reduced pressure to provide compound Int-B8 (1.1 g, 55%).
1H NMR (400 Hz, CDCl3) δ 7.66 (d, J=2.0 Hz, 1H), 7.60 (dd, J=8.4, 2.0 Hz, 1H), 7.45-7.35 (m, 5H), 7.00 (d, J=8.4 Hz, 1H), 5.50-5.45 (m, 2H), 5.34 (s, 2H), 5.15 (dd, J=7.6, 3.2 Hz, 1H), 5.01 (d, J=8.0 Hz, 1H), 4.26-4.09 (m, 3H), 2.20 (s, 3H), 2.11 (s, 3H), 2.08 (s, 3H), 2.03 (s, 3H).
EI-MS m/z: 575 (M++1).
Preparation of Compound Int-B9-1
To a solution of compound Int-B8 (3 g, 5.22 mmol) in EA (240 mL) was added Pd/C (300 mg, 10 wt %) at 0° C., and the mixture was stirred at the room temperature for 3 hours while injecting H2 gas. After the reaction was completed, the mixture was filtered through Celite®, and then concentrated under reduced pressure. Compound Int-B9-1 was used directly in the next reaction without further purification (2.84 g, 100%, beige foam)
ET-MS m/z: 507.2 (M+1+Na)
Preparation of Compound Int-B9-2
Compound Int-B9-1 (1 g, 2.06 mmol) and 11-azido-3,6,9-trioxaundecan-1-amine (630 mg, 2.48 mmol) were dissolved in DMF (10 mL). DIPEA (1.07 mL, 6.18 mmol) and PyBOP (1.28 g, 2.47 mmol) was added thereto at 0° C. under N2 atmosphere. After stirring at room temperature for 4 hours under N2 atmosphere, the mixture was quenched with H2O (250 mL) and extracted with EA (250 mL×3). The organic layer was dried over Na2SO4, filtered, and concentrated under reduced pressure. The residue was purified by column chromatography to provide compound Int-B9-2 (1.19 g, 84%) as a white foam.
1H NMR (400 MHz, CDCl3) δ 7.38-7.34 (m, 2H), 7.00 (d, J=8.0 Hz, 1H), 6.82 (d, J=5.2 Hz, 1H), 6.10 (brs, 1H), 5.49-5.45 (m, 2H), 5.14 (dd, J=3.6, 10.4 Hz, 1H), 4.99 (d, J=7.6 Hz, 1H), 4.27-4.08 (m, 3H), 3.74-3.63 (m, 14H), 3.37 (t, J=5.2 Hz, 2H), 2.20 (s, 3H), 2.12 (s, 3H), 2.08 (s, 3H), 2.03 (s, 3H). ET-MS m/z: 685.3 (M+1).
Preparation of Compound Int-B9-3
Compound Int-B9-2 (528 mg, 0.77 mmol) and compound Int-B7 (240 mg, 0.70 mmol) were dissolved in ACN (30 mL) and DMF (5 mL). BEMP (0.26 mL, 0.91 mmol) was added thereto at 0° C. under N2 atmosphere. After stirring at room temperature for 2 hours under N2 atmosphere the mixture was quenched with H2O (100 mL) and extracted with EA (100 mL×3). The organic layer was dried over Na2SO4, filtered, and concentrated under reduced pressure. The residue was purified by column chromatography to provide compound Int-B9-3 (568 mg, 81%) as a white foam.
1H NMR (400 MHz, CDCl3) δ 7.80 (d, J=2.0 Hz, 1H), 7.76 (dd, J=2.4, 8.8 Hz, 1H), 7.50 (d, J=8.4 Hz, 2H) 7.43-7.40 (m, 2H), 7.37 (d, J=2.0 Hz, 1H), 7.29-7.25 (m, 2H), 7.08 (d, J=4.8 Hz, 1H), 6.90 (d, J=8.4 Hz, 1H), 5.60-5.56 (m, 1H), 5.47 (d, J=3.2 Hz, 1H), 5.17-5.10 (m, 4H), 4.74 (d, J=6.4 Hz, 2H), 4.64 (d, J=6.0 Hz, 2H), 4.26-4.08 (m, 3H), 3.71-3.58 (m, 14H), 3.34 (t, J=4.8 Hz, 2H), 2.41 (t, J=6.4 Hz, 1H), 2.18 (s, 3H), 2.08 (s, 3H), 2.07 (s, 3H), 2.01 (s, 3H), 1.77 (t, J=6.0 Hz, 1H). ET-MS m/z: 1007.2 (M+1).
Preparation of Compound Int-B9-4
To a solution of compound Int-B9-3 (150 mg, 0.15 mmol) in CH2Cl2 (3 mL) was added methanesulfonyl chloride (150 mg, 0.15 mmol) at 0° C. under N2 atmosphere. The reaction mixture was stirred at room temperature for 24 hours under N2 atmosphere. After the reaction was completed, the mixture was quenched with H2O (50 mL) and extracted with CH2Cl2 (50 mL×3). The organic layer was dried over Na2SO4, filtered, and concentrated under reduced pressure, producing compound Int-B9-4 (214 mg, 100%) as a beige foam, which was used directly in the next step without further purification.
Preparation of Compound Int-B9-5
To a solution of compound Int-B9-4 (214 mg, 0.15 mmol) in ACN (3 mL) was added potassium thioacetate (43 mg, 0.37 mmol) at room temperature under N2 atmosphere. After stirring at room temperature for 3 hours under N2 atmosphere, the mixture was quenched with H2O (50 mL) and extracted with EA (50 mL×3). The organic layer was dried over Na2SO4, filtered, and concentrated under reduced pressure. The residue was purified by column chromatography to provide compound Int-B9-5 (147 mg, 88%) as a pale yellow foam.
1H NMR (400 MHz, CDCl3) δ 7.87 (d, J=2.0 Hz, 1H), 7.78 (dd, J=2.0, 8.4 Hz, 1H), 7.51 (d, J=8.4 Hz, 2H), 7.43-7.41 (m, 2H), 7.31-7.27 (m, 2H), 7.15 (dd, J=2.0, 8.0 Hz, 1H), 7.07-7.06 (m, 1H), 6.79 (d, J=8.4 Hz, 1H), 5.61-5.56 (m, 1H), 5.47 (d, J=3.2 Hz, 1H), 5.17 (d, J=8.0 Hz, 1H), 5.14-5.10 (m, 3H), 4.26-4.09 (m, 5H), 4.05 (s, 2H), 3.66-3.59 (m, 14H), 3.34 (t, J=5.6 Hz, 2H), 2.34 (s, 3H), 2.32 (s, 3H), 2.18 (s, 3H), 2.08 (s, 3H), 2.07 (s, 3H), 2.01 (s, 3H). ET-MS m/z: 1123.2 (M+1).
Preparation of Compound Int-B9-6
To a solution of compound Int-B9-5 (100 mg, 0.089 mmol) in ACN (2 mL) was added N-chlorosuccinimide (90 mg, 0.676 mmol) and 2N HCl (356 uL, 0.712 mmol) at 0° C. under N2 atmosphere. After stirring at 0° C. for 1 hour under N2 atmosphere, dimethylsulfide (19.6 uL, 0.267 mmol) was added thereto at room temperature. The reaction mixture was further stirred at the same temperature for 5 minutes. H2O (20 mL) and EA (20 mL×3) were added to perform extraction, and the obtained organic layers were dried over Na2SO4, filtered, and concentrated under reduced pressure, producing compound Int-B9-6 (140 mg, 100%) as a white foam, which was used directly in the next step without further purification.
ET-MS m/z: 1173.9 (M+1).
Preparation of Compound Int-B9
To a solution of compound Int-B9-6 (140 mg, 0.089 mmol) in ACN (2 mL) was added potassium hydrogen fluoride (41.7 mg, 0.534 mmol) in H2O (0.2 mL) at room temperature under N2 atmosphere. After stirring for 2 hours at room temperature, the mixture was purified by prep-HPLC to provide compound Int-B9 (42 mg, 41%) as a white foam.
1H NMR (400 MHz, CDCl3) δ 7.86 (d, J=2.0 Hz, 1H), 7.78 (dd, J=2.0, 8.4 Hz, 1H), 7.53-7.43 (m, 6H), 7.29 (d, J=8.8 Hz, 1H), 7.13-7.11 (m, 1H), 7.05 (d, J=9.2 Hz, 1H), 5.61-5.56 (m, 1H), 5.48 (d, J=2.4 Hz, 1H), 5.20 (s, 2H), 5.17 (d, J=8.0 Hz, 1H), 5.12 (dd, J=3.2, 10.4 Hz, 1H), 4.78 (d, J=3.6 Hz, 2H), 4.26-4.09 (m, 3H), 3.70-3.60 (m, 14H), 3.5 (t, J=5.2 Hz, 2H), 2.18 (s, 3H), 2.08 (s, 3H), 2.07 (s, 3H), 2.01 (s, 3H). ET-MS m/z: 1139.1 (M+1).
Preparation of Compound Int-T2-1 and Int-T2-2
To a solution of compound Int-B9 (12 mg, 0.0105 mmol) and combretastatin A-4 (3.3 mg, 0.0105 mmol, CAS NO: 117048-59-6, also known as CA-4) in ACN (0.8 mL) and DMF (0.2 mL) was added BEMP (3.05 uL, 0.0105 mmol) at room temperature under N2 atmosphere. After stirring for 0.5 hour at room temperature, the mixture was purified by HPLC to provide compounds Int-T2-1 and Int-T2-2.
Yield for compound Int-T2-1: 3.5 mg, 19%, EI-MS m/z: 1732 (M++1)
Yield for compound Int-T2-2: 6.0 mg, 40%, EI-MS m/z: 1436 (M+1)
Preparation of compound Int-T2
To a solution of Compound Int-T2-1 (7.3 mg, 0.0042 mmol) in MeOH (0.8 mL) and DCM (0.2 mL) was added K2CO3 (5.8 mg, 0.0421 mmol) under N2 atmosphere. After stirring for 50 minutes at 0° C., the reaction mixture was purified by HPLC to provide compound Int-T2 (4.6 mg, 70%).
EI-MS m/z: 1564 (M+1).
Preparation of compound Int-T3-1
To a solution of compounds Int-T2-2 (6.0 mg, 0.0042 mmol) and SN-38 (2.0 mg, 0.0050 mmol, CAA NO: 86639-52-3) in ACN (0.8 nmL) and DMF (0.2 mL) was added BEMP (1.8 uL, 0.0062 mmol) at room temperature under N2 atmosphere. After stirring for 1 hour at room temperature, the reaction mixture was purified by HPLC to provide compound Int-T3-1 (3.1 mg, 48%).
EI-MS m/z: 1808 (M+1)
Preparation of compound Int-T3
To a solution of compound Int-T3-1 (3.1 mg, 0.0017 mmol) in MeOH (0.8 mL) and DCM (0.2 mL) was added K2CO3 (2.4 mg, 0.0170 mmol) under N2 atmosphere. After stirring for 40 minutes at 0° C., the reaction mixture was purified by HPLC to provide compound Int-T3 (2.1 mg, 75%).
EI-MS m/z: 1640 (M+1).
Preparation of compound Int-T4-1
To a solution of compound Int-B9 (10.0 mg, 0.0088 mmol) and SN-38 (3.4 mg, 0.0088 mmol) in ACN (0.8 mL) and DMF (0.2 mL) was added BEMP (2.5 uL, 0.0088 mmol) at room temperature under N2 atmosphere. After stirring for 2 hours at room temperature, the reaction mixture was purified by HPLC to provide compound Int-T4-1 (4.5 mg, 27%).
EI-MS m/z: 1884 (M′)
Preparation of compound Int-T4
To a solution of Compound Int-T4-1 (4.5 mg, 0.0024 mmol) in MeOH (0.8 mL) and DCM (0.2 mL) was added K2CO3 (3.3 mg, 0.0239 mmol) under N2 atmosphere. After stirring for 40 minutes at 0° C., the reaction mixture was purified by HPLC to provide compound Int-T4 (2.7 mg, 66%).
EI-MS m/z: 1716 (M+1).
A homogeneous solution of N-succinimidyl 4-(N-maleimidomethyl)cyclohexane-carboxylate (85.5 mg, 0.26 mmol) and L-2 (75.3 mg, 0.28 mmol) in dry DCM at room temperature under N2 atmosphere was treated with DIPEA (44.5 uL, 0.26 mmol, 1 eq) and stirred to room temperature for 45 minutes. The reaction was diluted with DCM (32 mL) and washed with 1N HCl (30 mL), brine (30 mL), dried over anhydrous Na2SO4, filtered, and concentrated in vacuo. The residue was purified by prep-HPLC to give compound L-5 (70.8 mg, 61%, mixture 9 mg) as a white gum.
EI-MS m/z: 451 (M+1)
A homogeneous solution of compound Int-T2 (1.4 mg, 0.90 μmol) and compound L-5 (0.81 mg, 1.79 μmol) in DMSO (1.5 mL) and H2O (0.1 mL) at room temperature under N2 atmosphere were treated with (BimC4A)3 (2.2 mg, 2.69 μmol) and CuBr (1.26 mg, 8.95 μmol) and stirred for 10 min. The reaction mixture was purified by Prep HPLC chromatography to give compound T-2 (0.9 mg, 50%).
EI-MS m/z: 1008 (M+1/2).
Compound T-3 was synthesized via a similar synthetic route as described in Example 46.
Compound T-4 was synthesized via a similar synthetic route as described in Example 46.
Preparation of Compound Int-T5-1
To a solution of compound Int-B9 (9.30 mg, 0.0082 mmol) and a-amanitin (5.00 mg, 0.0054 mmol, CAS No. 23109-05-9) in ACN (0.8 nmL) and DMF (0.2 mL) was added BEMP (1.57 uL, 0.0054 mmol) at room temperature under N2 atmosphere. After stirring for 0.5 hour at room temperature, the mixture was purified by HPLC to provide compound Int-T5-1 (3.1 mg, 29%).
EI-MS m/z: 1019 (M+1/2).
Preparation of Compound Int-T5-2
To a solution of compound Int-T5-1 (5.10 mg, 0.0025 mmol) and SN-38 (0.98 mg, 0.0025 mmol) in ACN (0.8 mL) and DMF (0.2 mL) was added BEMP (0.72 uL, 0.0025 mmol) at room temperature under N2 atmosphere. After stirring for 1 hour at room temperature, the reaction mixture was purified by HPLC to provide compound Int-T5-2 (2.3 mg, 38%).
EI-MS m/z: 1206 (M+1/2).
Preparation of Compound Int-T5
To a solution of Compound Int-T5-2 (2.3 mg, 0.0009 mmol) in MeOH (0.3 mL) and H2O (0.2 mL) was added LiOH H2O (0.32 mg, 0.0076 mmol) under N2 atmosphere. After stirring for 30 minutes at 0° C., the reaction mixture was purified by HPLC to provide compound Int-T5 (1.7 mg, 79%).
EI-MS m/z: 1122 (M+1/2).
Preparation of compound Int-T6-1
To a solution of compound Int-B9 (1.86 mg, 0.0016 mmol) and α-amanitin (3.00 mg, 0.0033 mmol, CAS No. 23109-05-9) in ACN (0.4 nmL) and DMF (0.1 mL) was added BEMP (0.47 uL, 0.0016 mmol) at room temperature under N2 atmosphere. After stirring for 1 hour at room temperature, the mixture was purified by HPLC to provide compound Int-T6-1 (1.2 mg, 25%).
EI-MS mi/z: 1469 (M+1/2).
Preparation of Compound Int-T6
To a solution of compound Int-T6-1 (1.2 mg, 0.0004 mmol) in MeOH (0.4 mL) and H2O (0.2 mL) was added LiOH.H2O (0.14 mg, 0.0033 mmol) under N2 atmosphere. After stirring for 30 minutes at 0□, the reaction mixture was purified by HPLC to provide compound Int-T6 (0.8 mg, 71%).
EI-MS m/z: 1385 (M+1/2).
A homogeneous solution of compound Int-T5 (1.7 mg, 0.76 μmol) and compound L-5 (0.68 mg, 1.52 μmol) in DMSO (1.5 mL) and H2O (0.2 mL) at room temperature under N2 atmosphere was treated with (BimC4A)3 (1.87 mg, 2.27 μmol) and CuBr (1.06 mg, 7.58 μmol) and stirred for 10 min. The reaction mixture was purified by Prep HPLC chromatography to give compound T-5 (1.5 mg, 73%).
EI-MS m/z: 1347 (M+1/2).
Compound T-6 was synthesized via a similar synthetic route as described in Example 51.
Biological and Biochemical Studies
Compound A-1, A-2, or B-1 was dissolved in DMSO and mixed with PBS buffer solution to prepare 500 μM stock solution (1% DMSO). Methyl phenyl sulfone (MPS, CAS Number 3112-85-4, internal standard) was dissolved in PBS buffer solution to make 500 μM solution. 790 μL of PBS buffer (pH 7.4), 10 μL of the solution of compound A-1, A-2, or B-1 (500 μM) and 200 μL of MPS solution (500 μM) were mixed. Enzyme solution (E. coli β-galactosidase, Sigma G4155, 18 μL of 1 mg/mL) was added to 882 μL of the reaction mixture. When comparing with human p-galactosidase, 116 μL of the enzyme solution (0.1 mg/mL) was added, and solutions of compound A-1, A-2, or B-1 (140 μL), MPS (140 μL), and the buffer solution (533 μL, pH 7.4) were mixed.
The reaction mixture was incubated at 37° C. The enzyme reaction solution was aliquoted at 0 min before the reaction and at a predetermined time after the reaction, wherein each aliquot was 70 μL. The remaining compound A-1, A-2, or B-1, MPS, and the material liberated by the enzyme reaction were quantitatively analyzed by HPLC. The results of the studies are shown in Table 1 and
Compound A-1, A-2, or B-1 and MPS (internalstandard) were dissolved in DMSO to achieve a concentration of 60 mM. Then, each of human plasma (Biochemed 752PR-SC-PMG) and mouse plasma (Biochemed 029-APSC-MP) were mixed with the solution of the compound and MPS to achieve a final concentration of 300 μM (final 0.5% DMSO). The resulting plasma mixtures were incubated at 37° C. Aliquots were taken before the reaction and after 1 day, 2 days, 4 days, and 7 days. Each aliquot was 300 μL. To complete the reaction, two-fold volume of acetonitrile was added, followed by brief vortexing, and centrifugation for plasma protein precipitation. Each supernatant obtained after centrifugation was collected and analyzed by HPLC. The compound (A-1, A-2 or B-1) were detected and quantitated in the mouse and human plasma for up to 7 days (>95%). This study demonstrated excellent stability of the β-galactoside linker in plasma. The stability results in various plasma were shown in
Reduction/Oxidation of Antibodies for Conjugation: Cysteine engineered monoclonal antibodies were reduced with about a 20-50 fold excess of TCEP (tris(2-carboxyethyl) phosphine hydrochloride in 4 mM Tris pH 7.3 with 1 mM EDTA for 1 hours at 37° C. scFv-Fused HSAs were reduced with about 200 fold excess of L-cysteine in sodium acetate buffer (pH 5.0) at 37° C. for 1 day. The reduced thiomab or scFv-HSA were diluted and loaded onto a PD-10 column in PBS. The column was eluted with 10 mM PBS (pH 7.3). The eluted thiomabs were re-established by air oxidation at 4° C. for 4 days. The thiol/Ab or thiol/scFv-HSA value was checked by determining the reduced antibody concentration form the absorbance at 280 nm of the solution and the thiol concentration by reaction with DTNB (Aldrich, CAS No D8130) and determination of the absorbance at 412 nm.
Conjugation Method 1: Compound T-2, T-3, or T-4 (obtained in Examples 46, 47, and 48) (2.52 μL, 1.5 mmol, as linker-toxin intermediate) in DMSO was treated with the reduced, reoxidized antibody (7 μL, 0.12 mmol) and agitated gently at 40° C. for 1 hour. The conjugation mixture was loaded and eluted through PD-10 column to remove excess drug-linker intermediate and other impurities.
Conjugation Method 2: Compound T-2, T-3, T-4, T-5, or T-6 (obtained in Example 46, 47, 48, 51 and 52) (13.46 μL, 3.0 mmol, as linker-toxin intermediate) in DMSO was treated with the reduced scFv-HSA (10 μL, 0.050 mmol) and agitated gently at 37° C. for 1 hour. The conjugation mixture was loaded and eluted through PD-10 column to remove excess drug-linker intermediate and other impurities.
Compounds T-2, T-3, T-4, T-5, and T-6 were used to perform conjugation reaction to a thiol group of engineered cysteine of trastuzumab (anti-HER2), thereby preparing T-2-AB, T-3-AB, T-4-AB, T-5-AB, and T-6-AB as antibody drug conjugates. Compounds T-2, T-3, and T-4 were also used to perform conjugation reaction to a thiol group of the original cysteine of scFv-HSA (anti-HER2), thereby preparing T-2-scFv-Alb, T-3-scFv-Alb, and T-4-scFv-Alb as protein drug conjugates (PDC), respectivel according to methods known in the art (see Nature Biotechnology, 2008, 26, 925-932, Bioconjugate Chem., 2013, 24, 1256-1263, Bioconjugate Chem., 2016, 27, 1324-1331, Bioconjugate Chem. 2014, 25, 460-469). DAR (drug to antibody ratio) of conjugated antibody was analyzed by HIC and results of the analysis are shown in Table 2.
NCI-N87, SK-BR3 cancer cells were seeded in 96-well plates at a density of 5,000 cells per well in 100 μL of medium, and cultured for 24 hours. The eight compounds obtained in Example 55 and T-DM1 were treated by serial dilutions of 1:5 from 50 nM to 0.000128 nM. After 72 hours of incubation, 0.2 mL of 3-(4,5-dimethylthiazol-2-yl)-2,5-diphenyltetrazolium bromide (MTT) dye, dissolved in PBS buffer solution (5 mg/mL), was added to each well of the plates. The formazans formed by reduction of the MTT dye by mitochondrial oxidoreductases in the living cells were dissolved in DMSO, and measured using the absorbance at 550 nm. Results of in vitro analysis of protein drug conjugates are shown in Table 3 and
All publications and patents mentioned herein are hereby incorporated by reference in their entirety as if each individual publication or patent was specifically and individually indicated to be incorporated by reference. In case of conflict, the present application, including any definitions herein, will control.
While specific embodiments of the subject invention have been discussed, the above specification is illustrative and not restrictive. Many variations of the invention will become apparent to those skilled in the art upon review of this specification and the claims below. The full scope of the invention should be determined by reference to the claims, along with their full scope of equivalents, and the specification, along with such variations.
This application claims the benefit of U.S. Provisional Patent Application No. 62/788,013, filed on Jan. 3, 2019, the contents of which are fully incorporated by reference herein.
| Filing Document | Filing Date | Country | Kind |
|---|---|---|---|
| PCT/IB20/00018 | 1/3/2020 | WO | 00 |
| Number | Date | Country | |
|---|---|---|---|
| 62788013 | Jan 2019 | US |
