Patent Application
20080103110
This invention relates to protein-binding prodrug compounds, in particular compounds which are metabolized to release drug compounds effective in the treatment of cancer, inflammation, infection or pain, and to pharmaceutical compositions containing such prodrug compounds and their use in medical treatment of human or non-human animal subjects.
It is known in medical treatment to administer compounds which are therapeutically ineffective but which, in vivo, are metabolized into therapeutically effective compounds. Such therapeutically ineffective precursors are known as “prodrugs”. Equally it is known to administer therapeutically active compounds in a “camouflaged” form, e.g. encapsulated within liposomes, whereby the therapeutically active compound is not immediately available for binding to or uptake by the cells on which it is intended to act.
Many drugs administered to a vascularized animal (e.g. mammal, reptile, bird, fish, etc.) are transported to their site of action in the animal's blood. Moreover many drugs have to be administered repeatedly since a proportion of the drug molecules may be excreted or metabolized into inactive metabolites.
We have now found that drug efficacy may be enhanced and/or prolonged by the use of prodrugs which comprise a therapeutically effective moiety coupled via a metabolically cleavable bond to a blood protein binding moiety. These prodrugs are especially useful where prolonged drug action is desired, e.g. where the therapeutically effective moiety is a drug effective in the treatment of cancer, inflammation, infection, and pain, particularly cancer and pain.
Thus viewed from one aspect the invention provides a prodrug compound, preferably a water-soluble compound, comprising a therapeutically effective moiety coupled via a metabolically cleavable bond, preferably an ester bond or an oxidatively cleavable bond, especially an ester bond, to a blood protein binding moiety, preferably an acid moiety (e.g. a carboxylic acid moiety or a phosphorus oxyacid moiety, especially a carboxylic acid moiety), or an esterified acid moiety. More particularly the invention provides a water-soluble prodrug compound comprising a therapeutically effective moiety coupled via a metabolically cleavable bond to a protein binding moiety, wherein said therapeutically effective moiety has an anticancer, antiinflammatory, antiinfective or antipain effect, said protein binding moiety binds non-covalently to blood proteins, and the protein binding of said compound is at least 100% higher than that of the therapeutically effective moiety itself, with the exclusion of (i) the monoester of gemcitabine with azelaic acid, (ii) the monoester of dideoxycytidine with 1,12-dodecanedicarboxylic acid, (iii) 2-amino-1,9-dihydro-9(2′-(1-(10-acetyl-decanoyloxy)ethoxymethyl))-guanine, (iv) 5′-cytarabine monoester with 1,4-phenylene diacetic acid, (v) the monoester of metronidazole with 1,4-butanedicarboxylic acid, and (vi) the monoester of metronidazole with 1,6-phenylene diacetic acid; and pre-prodrugs metabolizable thereto.
Viewed from a further aspect the invention provides a pharmaceutical composition, preferably a solution for injection, comprising a prodrug compound according to the invention together with at least one pharmaceutically acceptable carrier or excipient.
Viewed from a still further aspect the invention provides a method of treatment of a human or non-human vascularized animal subject, which method comprises parenterally administering to said subject (typically a subject suffering from cancer, inflammation, infection or pain) an effective amount of a prodrug according to the invention.
In the method of the invention, the prodrug compounds will typically be used to treat those conditions for which the drug moiety they contain is used to treat.
Viewed from a yet further aspect the invention provides a process for the preparation of a prodrug according to the invention which process comprises coupling (e.g. by ester formation or hydroxyl, thiol or amine alkylation) a therapeutically active drug compound (or a salt or activated derivative thereof) and a blood protein-binding agent.
The prodrug compounds according to the invention for use in medicine forms a further aspect of the invention.
By blood protein is meant herein proteins which circulate in the blood, either dissolved within the continuous aqueous phase or displayed on the surface of the blood cells. The term does not cover proteins wholly encapsulated by blood cells. Such blood proteins may or may not be glycosylated and may or may not form part of larger aggregates (e.g. as in transferrin)
Desirably the blood protein to which the prodrug may bind is one having a blood half life of at least 5 days, more preferably at least 10 days, still more preferably at least 15 days.
Examples of suitable blood proteins include transferrin, cobalamin, haptocorrin, plasma albumin, α1 acid glycoprotein, and the cell surface proteins of erythrocytes (red blood cells). Especially preferably the blood protein is serum albumin, α1 acid glycoprotein or an erythrocyte surface protein, most preferably it is serum albumin.
The metabolically cleavable group between the protein binding moiety and the therapeutically effective moiety is preferably an ester or an oxidatively cleavable carbon-nitrogen, carbon-sulphur or carbon-oxygen (e.g. amine, thioether or ether) bond, e.g. a bond cleavable by a CYP enzyme. Especially preferably it is an ester bond.
If desired, in the prodrugs of the invention two or more therapeutically effective moieties (the drug moieties) may be attached via metabolically cleavable bonds to a single protein binding moiety or two or more, optionally different, protein binding moieties may be attached via metabolically cleavable bonds to a single drug moiety.
The metabolically cleavable ester group in the prodrugs of the invention may be a single or multiple (e.g. double) ester group providing a —CO—O— linkage oriented in either direction (or both directions) between the protein binding moiety (V) and the active drug moiety (D). Thus for example the prodrug can take the forms:
The use of double ester groups to link the drug and protein binding moiety is especially preferred.
Where the protein binding portion of the prodrug is bound via a linker to the metabolically cleavable bond, this portion may be referred to herein as a protein binding sub-unit.
Preferably the prodrug is formed by monoesterification of the therapeutically effective moiety with a diacid. Preferably the diacid comprises more than 5 carbon atoms.
Particularly desirably, the metabolically cleavable group is distanced from the protein binding sub-unit by a group —CH2—CH2—R— where the —CH2—CH2— component is attached to or by the metabolically cleavable bond (i.e. one atom may intervene between the bond and the first CH2 group) and R is a hydrocarbyl linker containing up to 30 carbon atoms, especially 4 to 20 carbons, e.g. a linear group optionally interrupted by or terminating in a 5 to 10 membered cyclic group (for example a phenyl group). Preferably the connecting group is —(CH2)r—R′— where r is ≧5, e.g. 9 to 22, and R′ is a bond or a hydrocarbyl linker as defined for R (less the appropriate number of carbons). Especially preferably R═(CH2)s where s≧3, preferably s=7 to 20.
The protein binding portion of the protein binding moiety in the prodrugs of the invention may be any group capable of reversibly or, less preferably, irreversibly (but not covalently) binding to a blood protein. Preferably it is one capable of binding by ionic attraction, hydrogen bonding or less preferably lipophile-lipophile attraction.
Typically such moieties will be selected from:
ionic groups;
hydrophilic groups;
negatively charged groups, e.g. acid groups (e.g. oxyacid groups, in particular carboxylic acid and phosphorus oxyacid groups);
aromatic groups (e.g. C5-12 groups, in particular phenyl, napthyl, etc. optionally substituted, e.g. by C1-6 hydrocarbyl, cyano, or halo groups);
oligopeptides;
oligosaccharides; and
oligonucleotides.
The protein binding moiety is preferably not a non-aromatic hydrocarbyl group other than a medium to long chain non aromatic group, and especially preferably is not such a C1-6 group.
Suitable protein binding groups can be identified by conventional screening techniques (e.g. phage display library scanning) and are also known from the literature. Examples of suitable groups include lectins (which can bind to glycosylated blood proteins) and RGD, or RGD analog, containing oligopeptides (see U.S. Pat. No. 5,374,622 and the publications mentioned therein and cited thereagainst).
If desired the protein binding group may itself be protected by a metabolically cleavable group, e.g. an alkyl group, especially a C1-6 alkyl group e.g. a t-butyl group. Preferably this group is one which is cleaved in the gastrointestinal tract. Following administration, this protecting group is cleaved and the protein binding prodrug is formed.
Particularly preferably the residue of the prodrug of the invention which remains after metabolic cleavage of the drug moiety will be a compound which either has regulatory approval, or is rapidly excreted by glomerular filtration, or remains firmly bound to the blood protein and thus is destroyed or excreted when the protein's blood lifetime expires (e.g. where the protein binding group is a RGD- or RGD-analog-containing oligopeptide).
The protein binding moiety used in the prodrugs of the invention is one which binds reversibly, i.e. non-covalently, to a binding site on the blood protein. In this way the prodrug is in equilibrium between bound and unbound states and thus is more available for cellular uptake than would be the case where binding is irreversible, i.e. covalent. The use of RGD-like binding moieties thus preferably involves use of those moieties which bind relatively weakly.
The protein binding moiety is preferably the residue of an a ω-aromatic (e.g. phenyl or napthyl) or ω-acid (e.g. carboxylic acid) C1-20 (especially C1-10) linker alkanol or alkyl-carboxylic acid.
It is especially preferred that the metabolic cleavage of the prodrug of the invention is such that no more than 50%, especially no more than 20%, particularly no more than 10% is excreted uncleaved.
The drug moiety in the prodrugs of the invention is preferably released by metabolic ester cleavage as an active drug compound in carboxylic acid (or salt) or alcohol form. Particularly preferably the drug released is a compound known to the be active and having regulatory approval in such an acid (or salt) or alcohol form. However for drug compounds which do not have regulatory approval in such form, acid- or alcohol-containing analogs may be used.
The invention is particularly useful where the cleaved drug moiety (or the regulatory approved analog), when administered conventionally achieves a blood protein binding level of less than 50%, especially less than 20%, more especially less than 10%. In particular, the prodrug of the invention preferably achieves a protein binding level (i.e. percent) at least 20% higher than would the cleaved drug molecule, particularly at least 50% higher, more particularly at least 100% higher. Plasma protein binding levels and blood half-lives for many drugs can be found for example in Goodman and Gilman “The pharmacological basis of therapeutics”, 10th Edition.
The drug moiety in the prodrug of the invention is preferably an anti-cancer (e.g. cytotoxic or cytostatic) drug, or a nucleoside or nucleoside analogue, a drug for treating infections, or a pain relieving or suppressing drug.
Especially preferably the drug moiety is or is an analog of a drug with a blood half life of less than 5 hours, particularly less than 3 hours, e.g. in the adult human.
Examples of suitable drug compounds which may be oriented in prodrug form according to the present invention include:
azathioprine, bleomycin, busulfan, carmustine (BCNU), chorambucil, cisplatin, cyclophoaphamide, cytarabine, doxorubicin, ethanbutol, etoposide, gemcitabine, fluorocytosine, fludarbine, fluorouracil, hydroxyurea, idarubicin, ifosfamide, irinotecan, letrozole, melphalan, mercaptopurine, methotrexate, paclitaxel, thiotepa, topotean, toremifene, abacavir, acyclovir, amoxicillin, amphotericin B, ampicillin, azlocillin, carbenicillin, cefalor, cefadroxil, cefamandole, cefazolin, cefanicid, cefeprime, cefixime, cefotaxime, cefoperazone, ceforanide, cefotaxime, cefotetan, cefoxitin, cefazidime, ceftizoxime, ceftriaxone, cefuroxime, cephalexin, cephalothin, cephapirin, cepharidine, chloramphenicol, chloroquine, cinoxacin, ciprofloxacin, clarithromycin, clavulanate, clindamycin, clozacillin, dapsone, didanoside, didanosine, dicloxacilline, delaviridine, doxycyclin, erythromycin, ethambutol, gentamicin, ganciclovir, gatifloxacin, imipramin, indinavir, isoniazid, itraconazole, ivermectine, kanamycin, ketoconazole, lamuvudine, mebendazole, mefloquine, methicillin, metronidazole, mezlocillin, minocycline, moxifloxacin, nelfinavir, navirapine, nitrofuratoin, ofloxacin, oseltamivir, praziquantel, quinine, quinupristin, qalfopristin, ribavirin, rifampin, rifabutin, ritonavir, saquinavir, stavudine, sulfamethoxazole, sulfasalazine, sulfisooxazole, tetracycline, thalidomide, tobramycin, trimethoprim, valacyclovir, vancomycin, zalcitabine, zanamivir, zidovudine, acetaminophen, albuterol, amikacin, atropine, cefepime, cimetidine, clonidine, codeine, ethosuximide, gabapentin, hydromorphone, isoniazid, isosorbide nitrate, levetitracetam, lisinopril, metformine, methylphenidate, metoprolol, nicotine, pacuronium, pramipexole, procainamide, ranitidine, rizatriptan, sumatriptan, tocamide, topiramate, acetylsalicyclic acid, alendronate, alfentanil, allopurinol, baclofen, benazepril, bumetanide, bupivacaine, buprenorphine, buspirone, carbidopa, carvedilol, cocaine, diclofenac, dobutamine, dolasetron, enoxaparin, entacapone, esmolol, fentanyl, fluvastatin, furosemide, gemfobrizil, glimepiride, glipzide, hydralazine, hydrochlorthiazide, ibuprofen, indomethacin, lansoprazole, levodopa, lidocaine, losartan, lovastatin, meperidine, metformine, methylprednisolone, midazolam, misoprostol, morphine, mycophenolate, nalbuphrine, naloxone, neostigmine, nicardipine, nifedipine, nitrofurantoin, nitroglycerin, omeprazole, ondasetron, oxcarbazepine, oxybutyrin, oxytocin, phenylephrine, pravastatin, prazosin, prednisolone, prednisone, propofol, propranolol, rapacuronium, remifentanil, repaglinide, risperidone, rosiglitazone, selegeline, sibutramine, sildenafil, simvastatin, sufentanil, sulindac, tolcapone, tolterodine, triazolam, zaleplon, zileuton, zolmitriptan and zolpidem.
Especially preferred drug compounds are:
metronidazole, 6-mercaptopurine, 5-fluorouracil, gemcitabine, acyclovir, cytarabine (ara-C) and didanosine (ddI, dideoxyinosine).
Therefore, viewed from a further aspect, the invention provides a prodrug compound comprising a therapeutically effective moiety coupled via a metabolically cleavable bond to a blood protein binding moiety, wherein the therapeutically effective moiety is selected from the group consisting of metronidazole, 6-mercaptopurine, 5-fluorouracil, gemcitabine, acyclovir, cytarabine and didanosine.
Preferably the protein binding moiety is an acid, e.g. a carboxylic acid or a phosphorus oxyacid, especially preferably it is an ester-bound azelaic acid, optionally with its second carboxyl group ester-protected.
Thus viewed from a further aspect the present invention provides a prodrug compound comprising a therapeutically effective moiety coupled via a metabolically cleavable bond to a blood protein binding moiety, wherein the therapeutically effective moiety is selected from the group consisting of metronidazole, 6-mercaptopurine, 5-fluorouracil, gemcitabine, acyclovir, cytarabine and didanosine and the protein binding moiety is an ester-bound azelaic acid, optionally with its second carboxyl group ester-protected.
The metabolically cleavable group is preferably distanced from the protein binding moiety by a group —CH2—CH2—R— as previously defined, more preferably R═(CH2), where s≧3, preferably s=7 to 20.
The preferences for the metabolically cleavable moiety expressed herein may be applied both to drug moieties as a whole and to the individually named drug moieties. However, in the case of metronidazole, the cleavable moiety preferably comprises a group (CH2)sR′ (where s≧7) and/or the protein binding sub-unit is preferably a phosphorus oxyacid (or ester); in the case of cytarabine the cleavable moiety preferably comprises a group (CH2)sR′ (where s≧3) and/or an optionally substituted phenylalkylcarbonyl group; in the case of 5-fluorouracil, the cleavable moiety preferably comprises a group (CH2)sR′ (where s≧3) and/or the protein binding sub-unit is preferably a phosphorus oxyacid (or ester); and in the case of didanosine the cleavable moiety preferably comprises a group (CH2)sR′ (where s≧4) and/or an optionally substituted phenylalkylcarbonyl group and/or the protein binding sub-unit is preferably a phosphorus oxyacid (or ester).
Especially preferably the present invention provides water-soluble esters of anticancer, anti-infection, antibacterial, antifungal and antiviral drugs where the drug is monoesterified with a dicarboxylic acid. Preferably the dicarboxylic acid has 9 to 16 carbon atoms, especially 9 to 12 carbon atoms. More especially preferably the dicarboxylic acid is linear and unsubstituted (e.g. HOOC(CH2)nCOOH wherein n=7 to 14). Especially preferred are esters for which the protein binding is at least 100% higher than for the corresponding drug, e.g. as determined in Example 7 below.
When the drug moiety is cytarabine, water-soluble cytarabine esters with at least 300% higher protein binding than cytarabine are preferred. More preferably the prodrug comprises water-soluble phosphate esters of cytarabine according to the general formula (I) below (wherein R is an alkyl or an aryl group) are preferred.
Alternatively the invention provides cytarabine esters according to formula II below wherein X is any group with 4 to 22 (more preferably 6 to 18) C-atoms comprising at least one acidic group. Preferably the acidic group is carboxylic acid. Particularly preferably X is a linear fatty acid chain with one carboxylic acid group in the end. Preferably X is not -Ph-COOH
When the drug moiety is gemcitabine, water-soluble gemcitabine esters with at least 500% higher protein binding than gemcitabine are preferred. Especially preferably, the prodrug comprises gemcitabine esters according to formula III below wherein X is any group with 4 to 22 (more preferably 6 to 18) C-atoms comprising at least one acidic group. Preferably the acidic group is carboxylic acid. Particularly preferably X is a linear fatty acid chain with one carboxylic acid group in the end. Preferably X is not —(CH2)7COOH
When the drug moiety is didanosine, water-soluble didanosine esters with at least 100% higher protein binding than didanosine are preferred. Especially preferably, the prodrug comprises didanosine esters according to formula IV below wherein X is any group with 4 to 22 (more preferably 6 to 18) C-atoms comprising at least one acidic group. Preferably the acidic group is carboxylic acid. Particularly preferably X is a linear fatty acid chain with one carboxylic acid group in the end.
When the drug moiety is 5-Fluorouracil, water-soluble 5-fluorouracil derivatives according to formula V below wherein X is any group with 6-22 carbon atoms comprising at least one acidic group are preferred.
When the drug moiety is metronidazole, water-soluble metronidazole derivatives according to formula VI below wherein X is any group with 9-22 carbon atoms comprising at least one acidic group are preferred.
When the drug moiety is 6-mercaptopurine, water-soluble 6-mercaptopurine derivatives according to formula VII below wherein X is a (CH2)6Y group, where Y is any group comprising at least one acidic group are preferred.
When the drug moiety is acyclovir, water-soluble acyclovir derivatives according to formula VIII below wherein X is (CH2)5Y, where Y is any group comprising at least one acidic group are preferred. Preferably Y is not —(CH2)3—COOH3
Such prodrug compounds are suitable for use in therapy and/or as a medicament.
Thus, from a further aspect, the invention provides a prodrug compound comprising a therapeutically effective moiety coupled via a metabolically cleavable bond to a blood protein binding moiety, wherein the therapeutically effective moiety is selected from the group consisting of metronidazole, 6-mercaptopurine, 5-fluorouracil, gemcitabine, acyclovir, cytarabine and didanosine, for use as a medicament.
The prodrugs of the invention may be prepared by conventional synthetic techniques for ester formation by reacting a protein binder precursor with a drug precursor optionally simultaneously or subsequent to reaction with a bifunctional linker moiety.
Preferably, the prodrugs of the invention have a partition coefficient of less than 10, more preferably, less than 8, especially preferably less than 5.
As mentioned above, the prodrugs of the invention are preferably water-soluble, e.g. at least 1 mg in 1000 mL at 21° C., especially at least 1 mg in 100 mL, more especially at least 1 mg in 30 mL.
The compounds of the invention are preferably low molecular weight compounds, preferably having a molecular weight of less than 2000, especially less than 1000, more especially less than 800.
The prodrug of the invention may be formulated with conventional pharmaceutical carriers or excipients (e.g. solvents, pH modifiers, viscosity modifiers, stabilizers, chelators, etc.) and in conventional administration forms (e.g. solutions, powders, dispersions, etc.).
The prodrugs of the invention will typically be administered at dosage levels below or comparable to those conventional for the cleaved drug moiety, e.g. at 5 to 100% of the conventional dosage, more especially 10 to 80%.
Any standard method of administration of the prodrug of the invention may be used, but parenteral delivery is preferred, especially intravenous administration.
Viewed from yet a further aspect the invention provides a method of producing a parenteral pharmaceutical composition, said method comprising selecting a drug compound which has regulatory approval in the EU or the US in a non-ester alcohol, acid or acid salt form; manufacturing an ester of said drug compound; formulating said ester into a parenterally administrable form together with a physiologically acceptable carrier or excipient (e.g. water for injections); and sterilizing and packaging said form.
Particularly preferred compounds for use in the invention are protein-binding cytosine derivatives, especially as follows (the alternative name for each compound is in italics): 1-β-D-Arabinofuranosylcytosine derivatives such as;
The invention will now be illustrated further by the following non-limiting Examples. Optionally excluded from coverage hereby are the compounds and compositions of Examples 1 to 6 below, and their various uses.
2′2′-Difluorodeoxyribofuranosyl cytosine (Gemcitabine) (0.26 g, 1 mmol) is dissolved in DMF (20 ml). HCl gas is added (1 mmol). A solution of crude azelaic acid mono acid chloride (prepared from azelaic acid and thionyl chloride) (0.23 g, 1.1 mmol) in DMF (3 ml) is added and the mixture is stirred for 24 hours. The solvent is evaporated at high vacuum and the crude product is purified on a column of silica gel. The title compound is isolated.
The title compound is prepared from 2′,3′-dideoxy-cytidine and 1,12-dodecanedicarboxylic acid according to method described in Example 1.
The acid chloride is made from sebacic acid monomethyl ester and thionyl chloride according to Organic Synthesis Coll Vol 3, p 613.
(Unsymmetrical diester of sebacic acid with methanol and 2′-acyclovir) (Prodrug)
Acyclovir (0.23 g, 1 mmol) is dissolved in dry pyridine (10 ml) and DMF (5 ml). A solution of the acid chloride from Example 3 (0.31 g, 1.3 mmol) in dichloromethane (3 ml) is added. The mixture is stirred at ambient temperature until TLC shows that no or very little acyclovir is left. The mixture is evaporated and the title compound is isolated after flash chromatography on silica.
The title compound is prepared from cytarabine and 1,4-phenylene diacetic acid according to method described in Example 1.
The ester from Example 5 (200 mg) is dissolved in water for injections (50 ml) by adding one equivalent of sodium hydroxide. The mixture is filtered through a 0.22 micrometer filter and filled into a 50 ml vial. The vial is freeze dried leaving the cytarabine monoester as sodium salt.
The powder is dissolved in water for injections before administration intravenously.
The compound (approximately 5 mg) was dissolved in DMSO (approximately 1.8 ml). A small sample of this DMSO solution (approximately 5 mg) was added to a solution of bovine serum albumin (BSA) in water (approximately 1.8 ml, 4% BSA). Another sample of the DMSO solution (approximately 5 mg) was added to a solution of phosphate buffer pH 7.4 (isotonic) (approximately 1.8 ml).
Both samples were shaken in a water bath for 30 minutes at 37° C.
The samples were transferred to centrifugal filter devices (Millipore Centricom YM-10, regenerated cellulose 10,000 MWCO. Cat. No. 4203). The devices were centrifugated at 4000 rpm for 1 hour at 37° C.
The amount of drug in the filtrates was determined by HPLC (C-18 column, phosphate buffer pH 2.2/acetonitrile, UV detection).
The phosphate buffer sample serves as a reference sample with no protein binding.
6-Mercaptopurine hydrate (510 mg, 3.0 mmol) and KOH (198 mg, 3.0 mmol) in MeOH (5 ml) was added to a suspension of ethyl 4-bromobutyrate (585 mg, 3.0 mmol) and NaI (450 mg, 3.0 mmol) in acetone (5 ml) and the mixture stirred at room temperature for 12 h. The reaction mixture was filtered and the filtrate evaporated in vacuo. The residue was added to Et2O and a white precipitate formed. The precipitate was transferred to a flash column with silica gel and separated with CH2Cl2/MeOH (7:1) as eluent system to leave the product as a white crystalline solid. Yield: 568 mg (71.2%).
1H-NMR (DMSO-d6, 200 MHz): δ 13.53 (br s, 1H), 8.69 (s, 1H), 8.45 (s, 1H), 4.12-4.02 (q, 2H), 3.43-3.35 (m, 2H), 2.51-2.43 (m, 2H), 2.06-1.92 (m, 2H), 1.18 (t, 3H).
6-Mercaptopurine hydrate (510 mg, 3.0 mmol) and KOH (198 mg, 3.0 mmol) in MeOH (5 ml) was added to a suspension of methyl 6-bromohexanoate (630 mg, 3.0 mmol) and NaI (450 mg, 3.0 mmol) in acetone (5 ml) and the mixture stirred at room temperature for 12 h. The reaction mixture was filtered and the filtrate evaporated in vacuo. The residue was added to Et2O and a white precipitate formed. The precipitate was transferred to a flash column with silica gel and separated with CH2Cl2/MeOH (7:1) as eluent system to leave the product as a white crystalline solid. Yield: 525 mg (61.9%).
1H-NMR (CDCl3, 200 MHz): δ 8.73 (s, 1H), 8.27 (s, 1H), 3.64 (s, 3H) 3.37 (t, 2H), 2.31 (t, 2H), 1.86-1.75 (m, 2H), 1.71-1.60 (m, 2H), 1.56-1.42 (m, 2H).
6-Mercaptopurine hydrate (611 mg, 3.6 mmol) and KOH (237 mg, 3.6 mmol) in MeOH (5 ml) was added to a suspension of methyl 12-bromododecanoate (1.05 mg, 3.6 mmol) and NaI (539 mg, 3.6 mmol) in acetone (5 ml) and the mixture stirred at room temperature for 12 h. The reaction mixture was filtered and the filtrate evaporated in vacuo. The residue was added to Et2O and a white precipitate formed. The precipitate was transferred to a flash column with silica gel and separated with CH2Cl2/MeOH (7:1) as eluent system to leave the product as a white crystalline solid. Yield: 606 mg (46.2%).
1H-NMR (DMSO-d6, 300 MHz): δ 8.62 (s, 1H), 8.35 (s, 1H), 3.55 (s, 3H), 3.31 (t, 2H), 2.25 (t, 2H), 1.72-1.63 (m, 2H), 1.47-1.39 (m, 4H), 1.21 (br s, 12H).
13C-NMR (DMSO-d6, 75 MHz): δ 173.3, 157.5, 151.1, 151.0, 144.2, 129.6, 51.1, 33.2, 29.15, 28.8, 28.7, 28.6, 28.5, 28.4, 28.1, 27.7, 24.3.
To 12-(1H-purin-6-ylthio) dodecanoic acid methyl ester (364 mg, 1.0 mmol) in H2O (5 ml) was added KOH (145 mg, 2.2 mmol) and stirred at room temperature for 12 h, filtered and the filtrate cooled to ° 0 C. on an ice bath. 1 M aqueous HCl was added dropwise to the solution to leave the free acid as a white precipitate. Yield: 274 mg (78.4%).
1H-NMR (DMSO-d6) δ 8.86 (s, 1H), 8.24 (s, 1H), 3.30 (t, 2H), 2.12 (t, 2H), 1.71-1.60 (m, 2H), 1.41-1.21 (m, 16H).
To 5-Fluorouracil (390 mg, 3.0 mmol) and NEt3 (303 mg, 3.0 mmol) in DMF (5 ml) was added the acid chloride of monomethyl azelaic acid (728 mg, 3.3 mmol) in DMF (2 ml) and stirred at room temperature overnight. The reaction mixture was filtered and the filtrate evaporated in vacuo. The residue was transferred to a flash column with silica gel and separated with CH2Cl2/MeOH (10:1) as eluent system to leave the expected product as a white solid. Yield: 372 mg, (39.5%).
1H-NMR (DMSO-d6, 300 MHz): δ 8.83 (br s, 1H), 8.26 (d, 1H), 3.64 (s, 3H), 3.09 (t, 2H), 2.28 (t, 2H), 1.72-1.56 (m, 4H), 1.38-1.22 (m, 6H).
13C-NMR (CDCl3, 75 MHz): δ 174.2, 171.8, 156.6, 156.2, 147.6, 139.6, 121.9, 121.4, 51.4, 38.9, 33.9, 28.8, 28.6, 24.7, 24.2.
To 5-Fluorouracil (390 mg, 3.0 mmol) in DMF (5 ml) was added anhydrous K2CO3 (829 mg, 6 mmol) and stirred at room temperature overnight. To the 5-FU potassium salt was added methyl 12-bromododecanoate (1.76 g, 6.0 mmol) in DMF (5 ml) and stirred for 12 h. The reaction mixture was filtered and the filtrate was evaporated in vacuo. The residue was transferred to a flash column with silica gel and separated with CH2Cl2/MeOH (10:1) as eluent system to leave the expected product as a white solid. Yield: 258 mg, (15.4%).
1H-NMR (DMSO-d6, 200 MHz): δ 7.19 (d, 1H), 3.98-3.90 (m, 2H), 3.74-3.68 (m, 8H), 2.30 (t, 4H), 1.64-1.57 (m, 8H), 1.26 (br s, 28H).
To hexadecanedioic acid (1.14 g, 4.0 mmol) in THF (40 ml) was added DCC (412 mg, 2.0 mmol) and stirred at room temperature for 2 h. The reaction mixture was added metronidazol (340 mg, 2.0 mmol) and DMAP (122 mg, 1.0 mmol) and the reaction mixture stirred overnight. The mixture was filtered and the filtrate was evaporated in vacuo. The residue was transferred to a flash column with silica gel and separated with CH2Cl2/MeOH (10:1) as eluent to leave the expected product as a white solid. Yield: 327 mg, (37.2%)
1H-NMR (DMSO-d6, 200 MHz): δ 11.96 (s, 1H), 8.04 (s, 1H), 4.60 (t, 2H), 4.38 (t, 2H), 3.34 (s, 1H), 2.47 (s, 3H), 2.26-2.16 (m, 4H), 1.50-1.40 (m, 4H), 1.25 (br s, 20H).
To metronidazol (1.71 g, 10.0 mmol) in CH3CN (150 ml) was added phthalic anhydride (1.48 g, 10.0 mmol) and DMAP (122 mg, 1.0 mmol) and stirred at room temperature overnight. The title compound was collected as a precipitate, filtered and dried. Yield: 2.78 g (87.1%).
1H-NMR (DMSO-d6): δ 13.3 (br s, 1H), 8.06 (s, 1H), 7.82-7.68 (m, 1H), 7.66-7.61 (m, 2H), 7.56-7.48 (m, 1H), 4.71-4.56 (m, 4H), 2.45 (s, 3H)
A suspension of cytarabin hydrochloric salt (prepared from cytarabin and 1M HCl in diethyl ether) (839 mg, 3.0 mmol) in DMA (10 ml) was added to the acid chloride of monomethyl azelaic acid (761 mg, 3.45 mmol) in DMA (2 ml) and the mixture stirred at room temperature overnight. NEt3 was added to the reaction mixture (303 mg, 3.0 mmol) and the mixture evaporated in vacuo. The residue was transferred to a flash column with silica gel and separated with (CH2Cl2/MeOH 10:1) as eluent system to leave the product as a white solid. Yield: 278 mg, (21.6%).
1H-NMR (DMSO-d6, 300 MHz): δ 7.47 (d, 1H), 7.10 (br d, 2H), 6.09 (d, 1H), 5.67 (d, 1H), 5.60-5.56 (m, 2H), 4.33-3.88 (m, 2H), 3.98-3.96 (m, 1H), 3.94-3.88 (m, 2H), 3.57 (s, 3H), 3.33 (br s, 1H), 2.34-2.25 (m, 4H), 1.54-1.47 (m, 4H), 1.22 (br s, 6H).
13C-NMR (DMSO-d6, 75 MHz): δ 173.3, 172.8, 165.5, 155.0, 142.8, 92.5, 86.1, 81.7, 76.7, 74.2, 63.6, 51.1, 45.2, 33.5, 33.1, 28.2, 28.1, 24.3, 8.4.
The compounds 1-4 were prepared according to Greenwald, R. B., Choe, Y. H., Conover, C. D., Shum, K., Wu, D., Royzen, M. J. Med. Chem., 2000, 43, 475-487.
EDC.HCl (1.75 g, 9.3 mmol) was added to a mixture of 4 (1.00 g, 3.1 mmol), BOC-Gly-OH (1.09 g, 6.2 mmol) and DMAP (2.65 g, 21.7 mmol) in anhydrous CH2Cl2 (10 ml) at 0° C. The mixture was stirred overnight and 100 ml CH2Cl2 was added. The solution was washed with 1% NaHCO3 (3×50 ml), 1 M HCl (3×50 ml) and dried over MgSO4. The solvent was removed in vacuo and the residue was purified by flash chromatography (3% MeOH in CH2Cl2).
Yield: 1.2 g.
1H NMR (CDCl3) δ 6.84 (d, 2.5 Hz, 1H), 6.59 (s, 1H), 5.19 (s, broad, 1H), 4.15 (d, 5.5 Hz, 2H), 3.50 (t, 7.6 Hz, 2H), 2.54 (s, 3H), 2.24 (s, 3H), 2.02 (t, 7.5 Hz, 2H), 1.48 (d, 6+9H), 0.86 (s, 9H), 0.00 (s, 6H);
13C NMR δ 170.03, 156.07, 149.72, 138.96, 136.52, 134.41, 133.01, 123.16, 80.49, 61.12, 53.82, 46.43, 43.71, 39.49, 32.18, 28.72, 26.33, 25.61, 20.54, 18.61, −4.94.
Prepared by reacting EDC.HCl (1.92 g, 10 mmol), 4 (1.61 g, 5 mmol), BOC-Phe-OH (1.99 g, 7.5 mmol) and DMAP (3.05 g, 25 mmol) in anhydrous CH2Cl2 (75 ml) as described for 5a. Yield: 2.6 g (90%).
1H NMR (CDCl3) δ 7.29 (m, 5H), 6.78 (s, 1H), 6.26 (s, 1H), 5.09 (d, 1H), 4.75 (q, 1H), 3.50 (t, 7.5 Hz, 2H), 3.21 (m, 2H), 2.55 (s, 3H), 2.23 (s, 3H), 2.08 (m, 2H), 1.49 (d, 6+9H), 0.87 (s, 9H), 0.00 (s, 6H).
A mixture of 5a (1.2 g, x mmol), THF (5 ml), H2O (5 ml) and HOAc (15 ml) was stirred at room temperature for 1 h. The solvent was removed in vacuo to give the product as an oil. The product was used without further purification.
A mixture of 5b (2.6 g), THF (10 ml), H2O (10 ml) and HOAc (30 ml) was stirred at room temperature for 1 h. The solvent was removed in vacuo to give the product as an oil. The product was used without further purification.
A solution of 6a (1.04 g, 2.85 mmol) in anhydrous CH2Cl2 (20 ml) was slowly added to a suspension of PCC (1.35 g, 6.25 mmol) of anhydrous CH2Cl2 (50 ml) and stirred overnight at room temperature. The reaction mixture was evaporated in vacuo and the residue was dissolved in CH2Cl2 (30 ml) followed by filtration through a plug of silica (5 cm). The silica gel was flushed with diethyl ether 5 times. The filtrate was evaporated to give the a viscous oil. The oil was dissolved CH3CN (ml) and slowly added to a solution of NaH2PO4 in H2O, followed by slowly addition of 80% sodium chlorite (0.68 g, 7.5 mmol) in H2O (12 ml) at 0° C. The reaction mixture was stirred for 1 h at 0° C. and then allowed to reach room temperature. Sodium sulfite was added to the reaction to decompose HOCl and H2O2. The pH was adjusted to 2 using 1 M aqueous HCl, followed by extraction with ethyl acetate. The organic phase was washed with brine and dried over anhydrous MgSO4. The solvent was removed in vacuo and the residue was purified by flash chromatography (10-20% MeOH in CH2Cl2) to give the product. Yield: 0.65 g.
1H NMR (CDCl3) δ 6.84 (d, 1.5 Hz, 1H), 6.62 (s, 1H), 5.28 (s, broad, 1H), 4.15 (d, 5.5 Hz, 2H), 2.82 (s, 2H), 2.55 (s, 3H), 2.24 (s, 3H), 1.58 (s, 6H), 1.48 (s, 9H).
A solution of 6b (2.64 g, 4.9 mmol) in anhydrous CH2Cl2 (50 ml) was slowly added to a suspension of PCC (2.33 g, 10.8 mmol) of anhydrous CH2Cl2 (100 ml) and stirred overnight at room temperature. The reaction mixture was evaporated in vacuo and the residue was dissolved in CH2Cl2 (30 ml) followed by filtration through a plug of silica (5 cm). The silica gel was flushed with diethyl ether 5 times. The filtrate was evaporated to give the a viscous oil. The oil was dissolved in CH3CN (9 ml) and added to a solution of NaH2PO4 (0.25 g, 1.8 mmol) in H2O (4 ml), followed by slowly addition of 80% sodium chlorite (0.68 g, 7.5 mmol) in H2O (12 ml) at 0° C. The reaction mixture was stirred for 1 h at 0° C. and then allowed to reach room temperature. Sodium sulfite (0.38 g, 3 mmol) was added to the reaction to decompose HOCl and H2O2. The pH was adjusted to 2 using 1 M aqueous HCl, followed by extraction with ethyl acetate. The organic phase was washed with brine and dried over anhydrous MgSO4. The solvent was removed in vacuo and the residue was purified by flash chromatography (10-20% MeOH in CH2Cl2) to give the product. Yield: 1.2 g.
1H NMR (CDCl3) δ 9.03 (s, broad, 1H), 7.21 (m, 5H), 6.65 (s, 1H), 6.18 (s, 1H), 5.04 (d, Hz, 1H), 4.65 (q, Hz, 1H), 3.30-2.97 (m, 2H), 2.75 (m, 2H), 2.41 (s, 3H), 2.10 (s, 3H), 1.60 (s, 3H), 1.45 (s, 3H), 1.36 (s, 9H);
13C NMR δ 176.38, 171.76, 155.88, 149.73, 138.63, 136.69, 136.20, 133.90, 133.07, 129.96, 129.12, 127.66, 122.86, 80.89, 55.45, 47.98 39.12, 38.16, 31.86, 31.69, 28.67, 25.76, 20.63.
A Mixture of 7a (0.50 g, 1.3 mmol), ara-C (1.26 g, 5.2 mmol), HOBT (0.70 g, 5.2 mmol) and EDC.HCl (1.99 g, 10.4 mmol) in anhydrous pyridine (30 ml) was stirred at room temperature for 2 h followed by stirring at 40° C. overnight. The solvent was removed in vacuo and the residue was dissolved in CH2Cl2 (50 ml) followed by extraction with water (3×30 ml) and 0.1 M HCl (2×30 ml). The organic phase was dried over anhydrous MgSO4 and evaporated in vacuo. The residue was purified by flash chromatography (5-10% MeOH in CH2Cl2) to give white crystalline material. Yield: 0.29 g (36%).
1H NMR (CDCl3) δ 9.70 (d, broad, 1H), 8.08 (s, 1H), 7.28 (q, 1H), 6.79 (s, 1H), 6.59 (s, 1H), 6.10 (s, 1H), 5.83 (s, 1H), 5.55-5.39 (m, 2H), 4.71 (s, 1H), 4.47 (s, 1H), 4.25 (s, 1H), 4.07 (d, 3H), 3.81 (s, broad, 2H), 3.01-2.77 (m, 2H), 2.49 (s, 3H), 2.18 (s, 3H), 1.56-1.43 (m, 6+9H).
A mixture of 7b (0.67 g, 1.4 mmol), ara-C (1.36 g, 5.6 mmol), HOBT (0.76 g, 5.6 mmol) and EDC.HCl (2.15 g, 11.2 mmol) in anhydrous pyridine (35 ml) was stirred at room temperature for 2 h followed by stirring at 40° C. overnight. The solvent was removed in vacuo and the residue was dissolved in CH2Cl2 (50 ml) followed by extraction with water (3×30 ml) and 0.1 M HCl (2×30 ml). The organic phase was dried over anhydrous MgSO4 and evaporated in vacuo. The residue was purified by flash chromatography (5-10% MeOH in CH2Cl2) to give white crystalline material. Yield: 0.35 g.
1H NMR (CDCl3) δ 9.35-9.01 (m, 1H), 8.59 (m, 1H), 8.15 (m, 1H), 7.69 (m, 1H), 7.28 (m, 6H), 6.75 (d, 1H), 6.23 (t, 1H), 6.16 (t, 1H), 5.90-5.74 (m, 1H), 5.25 (s, 1H), 4.84 (m, 1H), 4.59 (s, 1H), 4.33 (s, 1H), 4.15 (s, 1H), 3.92-3.67 (m, 2H), 3.35-3.25 (m, 1H), 3.20-3.12 (m, 1H), 2.88 (s, 2H), 2.54-2.41 (m, 3H), 2.23 (d, 3H), 1.58-1.44 (m, 6H), 1.38 (s, 9H);
13C NMR δ 173.59, 172.30, 162.45, 156.40, 156.03, 150.23, 149.99, 147.04, 138.60, 137.13, 136.65, 136.42, 133.71, 133.31, 129.92, 129.70, 129.01, 127.52, 124.28, 123.02, 96.95, 89.22, 86.50, 80.63, 74.77, 62.36, 55.53, 50.71, 40.02, 38.33, 32.57, 31.93, 28.71, 25.82, 20.56.
TFA (10 ml) was added to a solution of 8a (0.29 g) in CH2Cl2 (10 ml) and the mixture was stirred for 2 h. The solvent was evaporated in vacuo and diethyl ether was added to precipitate the product as the TFA-salt.
Glutaric anhydride (0.042 g, 0.56 mmol) was added to a solution of 9a (0.228 g, 0.37 mmol) and triethylamine (0.06 g, 0.006 mmol) in DMF (10 ml) at 0° C. The reaction mixture was stirred overnight and evaporated in vacuo. The residue was dissolved in MeOH (0.5 ml) and the product was precipitated by adding diethyl ether. The white crystalline material was collected by filtration. Yield: 0.15 g.
1H NMR (CD3OD-CDCl3) δ 8.16 (d, 7.3 Hz, 1H), 7.33 (d, 7.4 Hz, 1H), 6.83 (s, 1H), 6.59 (s, 1H), 6.20 (s, 1H), 4.26 (s, 2H), 4.17 (d, 3H), 4.07 (s, 1H), 3.84 (q, 2H), 3.50 (q, 1H), 3.34 (s, 1H), 3.16 (q, 1H), 2.94 (t, 2H), 2.56 (s, 3H), 2.38 (d, 5H), 2.21 (s, 3H), 1.96 (t, 2H), 1.62 (s, 6H), 1.31 (t, 7.0 Hz, 2H), 1.20 (t, 7.0 Hz, 2H);
13C NMR δ 180.22, 179.10, 176.47, 174.07, 166.96, 160.64, 153.64, 150.63, 142.56, 140.72, 137.78, 136.95, 126.95, 100.47, 92.47, 90.15, 81.20, 79.30, 70.16, 65.78, 54.28, 51.89, 46.40, 43.45, 38.84, 37.29, 35.75, 35.66, 29.46, 25.05, 24.03, 18.98, 12.64.
Cytarabin derivative (10b) can be prepared from compound 8b similarly to compound (10a).
Prepared according to Dutta et al (Dutta, A. S., Gormley, J. J., McLachlan, P. F., Major, J. S. J. Med. Chem. 1990, 33, 2560-2568) for the corresponding methyl ester by reacting glutaric anhydride (1.92 g, 10 mmol), phenylalanine tert-butyl ester (1.61 g, 5 mmol), and triethylamine (3.05 g, 25 mmol) in DMF (75 ml). Yield: 2.6 g.
Prepared by reacting EDC.HCl (1.92 g, 10 mmol), 4 (1.61 g, 5 mmol), 12 (2.51 g, 7.5 mmol) and DMAP (3.05 g, 25 mmol) in anhydrous CH2Cl2 (75 ml) as described for 5a.
Yield: 2.6 g (90%).
1H NMR (CDCl3) δ 7.26-7.17 (m, 5H), 6.72 (s, 1H), 6.55 (s, 1H), 6.03 (d, 1H), 4.79 (q, 1H), 3.45 (t, 7.5 Hz, 2H), 3.10 (d, 2H), 2.57 (t, 2H), 2.55 (s, 3H), 2.29 (t, 2H), 2.23 (s, 3H), 2.04 (m, 4H), 1.46 (s, 6H), 1.42 (s, 9H), 0.86 (s, 9H), 0.00 (s, 6H).
Prepared by reacting 13 (1.2 g, 3.75 mmol), THF (5 ml), H2O (5 ml) and HOAc (15 ml) as described for 6a.
A solution of 14 (1.97 g, 3.75 mmol) in anhydrous CH2Cl2 (50 ml) was slowly added to a suspension of PCC (2.33 g, 10.8 mmol) of anhydrous CH2Cl2 (100 ml) and stirred overnight at room temperature. The reaction mixture was evaporated in vacuo and the residue was dissolved in CH2Cl2 (30 ml) followed by filtration through a plug of silica (5 cm). The silica gel was flushed with diethyl ether 5 times. The filtrate was evaporated to give the a viscous oil. The oil was dissolved CH3CN (9 ml) and added to a solution of NaH2PO4 (0.31 g, 2.25 mmol) in H2O (4 ml), followed by slow addition of 80% sodium chlorite (0.85 g, 9.38 mmol) in H2O (12 ml) at 0° C. The reaction mixture was stirred for 1 h at 0° C. and then allowed to reach room temperature. Sodium sulfite (0.47 g, 3.75 mmol) was added to the reaction to decompose HOCl and H2O2. The pH was adjusted to 2 using 1 M aqueous HCl, followed by extraction with ethyl acetate. The organic phase was washed with brine and dried over anhydrous MgSO4. The solvent was removed in vacuo and the residue was purified by flash chromatography (10-20% MeOH in CH2Cl2) to give the product. Yield: 1.08 g.
1H NMR (CDCl3) δ 8.35 (s, broad, 1H), 7.34-7.16 (m, 5H), 6.84 (d, 1.7 Hz, 1H), 6.60 (d, 1.7 Hz, 1H), 6.38 (d, 8.1 Hz, 1H), 4.81 (q, Hz 6.3-7.8, 1H), 3.13 (d, 8.4 Hz, 2H), 2.84 (s, 2H), 2.60 (t, 7.2 Hz, 2H), 2.58 (s, 3H), 2.34 (t, 6.9 Hz, 2H), 2.25 (s, 3H), 1.60 (s, 6H), 1.44 (s, 9H).
Prepared by reacting 15 (1.08 g, 2 mmol), ara-C (1.95 g, 8 mmol), HOBT (1.08 g, 8 mmol) and EDC.HCl (3.07 g, 16 mmol) in anhydrous pyridine (50 ml) as described for 8a.
Yield: 0.5 g.
1H NMR (CDCl3) δ 9.25 (s, 1H), 8.63 (s, 1H), 8.12 (d, 7.5 Hz, 1H), 7.45-7.19 (m, 7H), 6.83 (d, 1H), 6.75 (d, 1.4 Hz, 1H), 6.54 (s, 1H), 6.06 (d, 3.0 Hz, 1H), 4.82 (q, 1H), 4.49 (s, 1H), 4.33 (s, 1H), 4.10 (s, 1H), 3.90-3.70 (m, 2H), 3.09 (d, 6.8 Hz, 2H), 2.92-2.77 (m, 2H), 2.60 (t, 2H), 2.50 (s, 3H), 2.32 (t, 2H), 2.15 (s, 3H), 2.01-1.84 (m, 2H), 1.70 (s, 3H), 1.65 (s, 3H), 1.37 (s, 9H);
13C NMR δ 173.04, 172.90, 172.18, 171.93, 162.65, 156.44, 149.72, 138.53, 136.72, 133.66, 129.83, 128.78, 127.33, 88.61, 86.00, 82.86, 54.32, 39.53, 38.33, 35.19, 34.15, 32.23, 31.96, 28.33, 25.92, 20.81, 20.63.
TFA (10 ml) was added to a solution of 15 (0.29 g, mmol) in CH2Cl2 (10 ml) and the mixture was stirred for 2 h. The solvent was evaporated in vacuo and diethyl ether was added to precipitate the product as the TFA-salt. Yield: 0.36 g.
1H NMR (CDCl3) δ 10.75 (s, 1H), 8.20 (s, 1H), 7.90 (d, 7.5 Hz, 1H), 7.42-7.15 (m, 6H), 6.81 (s, 1H), 6.56 (s, 2H), 6.10 (d, 1H), 4.90 (s, 2H), 4.43 (d, 2H), 4.32 (s, 1H), 4.10 (d, 1H), 3.80 (m, 2H), 3.25 (d, 6.8 Hz, 1H), 2.99-2.75 (m, 3H), 2.52 (d, 3H), 2.31 (s, 2H), 2.20 (s, 3H), 1.97 (s, 2H), 1.55 (s, 3H), 1.40 (s, 3H);
13C NMR δ 176.20, 173.86, 172.78, 172.04, 149.42, 138.71, 136.73, 136.61, 133.72, 132.94, 129.54, 129.04, 127.46, 123.23, 66.29, 53.91, 39.41, 38.10, 35.20, 33.59, 32.30, 31.58, 25.85, 21.35, 20.62, 15.68.
The synthesis was based on a work published by Hong et al. Hong, C. I., Kirisits, A. J., Nechaev, A., Buchheit, D. J., West, C. R. J. Med. Chem. 1985, 28, 171-177.
POCl3 (0.5 ml) was added to a mixture of ara-C (0.73 g, 3 mmol) and trimethyl phosphate (15 ml) at −10° C. The reaction mixture was stirred at 0° C. for 4 h before benzylalcohol (15 mmol) was added. After 48 h at 4° C. the reaction mixture was poured into H2O (250 ml) containing NaHCO3 (1 g). The reaction was evaporated in vacuo and dissolved in MeOH (5 ml). Insoluble material was filtered and the filtrate was added diethyl ether to precipitate the product as white crystalline material.
1H NMR (CDCl3) δ 9.40-9.09 (d, 1H), 7.90 (d, 7.1 Hz, 1H), 7.30-7.15 (m, 5H), 6.05 (d, 3.0 Hz, 1H), 4.35-3.64 (m, 7H), 3.66 (d, 11.0 Hz, 1H), 3.43 (s, 2H), 3.40 (s, 2H), 2.84 (t, 2H);
13C NMR δ 162.03, 150.79, 144.96, 138.86, 129.26, 128.56, 126.45, 93.18, 87.05, 84.35, 76.19, 74.87, 65.67, 64.74, 54.40, 52.28, 36.97.
A mixture of didanosine (300 mg), hexadecanedioic acid (1.26 g), dimethylaminopyridine (80 mg), N-(3-dimethylaminopropyl)-N′-ethyl-carbodiimide hydrochloride (300 mg) in THF (50 ml) was stirred overnight at ambient temperature. The mixture was evaporated and the title compound was isolated by flash chromatography (silica, methanol:CH2Cl2=2:8) plus 2% NH3 solution (25%) as a white powder.
Yield: 323 mg (50.5%)
NMR (DMSO-d6): 1.22-2.50 (m), 4.14-4.25 (m), 6.24 (t), 8.07 (s), 8.24 (s).
MS: 505 (M+H)
This compound was prepared as in Example 21 using hexanedioic acid.
Yield: 28 mg
NMR confirmed the structure
MS: 387 (M+Na)
The compound was prepared as in Example 21 using octanedioic acid.
Yield: 26 mg
NMR confirmed the structure
MS: 393 (M+H)
The compound was prepared as in Example 21 using dicanedioic acid.
Yield: 335 mg
NMR confirmed the structure
MS: 419 (M+H)
2′,3′-dideoxyinosine (1 g, 4.24 mmol), 1,8-Diaza-7-bicyclo[5.4.0]undecene (1.29 g, 8.47 mmol), 4-dimethylaminopyridine (small catalytic amount) and DMF (10 ml) was stirred on an ice bath. Bocanhydride (1.4 g, 8.04 mmol) dissolved in DMF (10 ml) was added. The reaction mixture was stirred at room temperature over night. The reaction mixture was concentrated, 20 ml DCM added and washed with 3×20 ml NaHCO3. The organic phase was dried with sodium sulphate, filtered, concentrated and purified by chromatography on silica using 12.5% MeOH 2% aqueous ammonia in DCM. Resulting in 611 mg white crystalline product.
46% Yield.
2,3′dideoxyinosine (100 mg, 0.424 mmol), 1,4-benzenedicarboxylic acid (281 mg, 1.69 mmol), DMAP (20 mg, 1.64 mmol) and THF (12 ml) was stirred on an ice bath. N-(-3-Dimethylaminopropyl)-N′-ethylcarbodiimidehydrochloride (106 mg, 0.553 mmol) was added. The mixture was shaken and stirred overnight. Aqueous ammonia (1 ml), MeOH (10 ml) and DCM (10 ml) was added. The mixture was shaken, silica added, concentrated and purified by chromatography on silica using 30-40% MeOH, 5% aqueous ammonia in DCM.
The other derivates of symmetric di-acids were prepared in the same manner:
20 mg, 12% yield.
41 mg, 25% yield.
70 mg, 40% yield.
77 mg, 44% yield.
73 mg, 42% yield.
81 mg, 43% yield.
The method for determination of protein binding is described in Example 7
The method for determination of protein binding is described in Example 7
A mixture of the methyl ester of the title compound (220 mg, 0.51 mmol) and potassium hydroxide (34 mg, 0.51 mmol) in a mixture of ethanol and water (1:1, 4 ml) was stirred at ambient temperature for 12 hours. The reaction mixture was evaporated. LCMS confirmed that the title compound was formed.
Mono Protection of Dicarboxylic Acids
Mono protection of dicarboxylic acids according to Scheme 4 was prepared using the method developed by Ogawa, Y., Kodaka, M., Okuno, H. Chemistry and Physics of Lipids 2002, 119, 51-68.
A mixture of azelaic acid (9.41 g, 50.0 mmol) and p-TsOH (1.90 g, 10.0 mmol) in toluene (100 ml) was added to 2,2,2-trichloroethanol (1.49 g, 10.0 mmol) and stirred at 140° C. with a Dean Stark trap attached. The reaction mixture was stirred overnight, cooled to 0° C., and the unreacted azelaic acid filtered off. The filtrate was washed with water and brine, dried over Na2SO4 and filtered. The organic layer was evaporated in vacuo to give the mono(2,2,2-trichloroethyl)ester of azelaic acid as a yellow oil (2.83 g, 88.7%).
1H-NMR (CDCl3): δ 4.72 (s, 2H), 2.43 (t, 2H), 2.32 (t, 2H), 1.70-1.58 (m, 4H), 1.33 (br s, 6H)
Following the procedure outlined in example 30, dodecanedioic acid (11.50 g, 20.0 mmol) was converted to the mono(2,2,2-trichloroethyl)ester as a yellow oil (1.51 g, 83.5%).
1H-NMR (CDCl3): δ 4.78 (s, 2H), 2.49 (t, 2H), 2.39 (t, 2H), 1.70-1.58 (m, 4H), 1.32 (br s, 12H)
Mono(2,2,2-trichloroethyl)ester of azelaic acid (2.41 g, 7.5 mmol) in CH2Cl2 (75 ml) was added to SOCl2 (3.58 g, 30.0 mmol) and stirred under reflux for 3 hours. The reaction mixture was concentrated in vacuo and the mono(2,2,2-trichloroethyl)azelaoyl chloride used in the next step without any further purification. A suspension of Ara-C HCl (1.01 g, 3.6 mmol) in DMA (15 ml) was added to the acid chloride (1.41 g, 4.2 mmol) in DMA (5 ml) and stirred at room temperature overnight. The reaction mixture was evaporated in vacuo and the residue added to EtOAc (40 ml) and brine (20 ml). The organic layer was separated, dried over Na2SO4, filtered and evaporated in vacuo to give the crude product as an oil. The oil was purified on a column of silica gel with MeOH (5-30%) in CH2Cl2 as the eluent system to give 5′-O-[(2,2,2-trichloroethyl)azelaoyl]1-β-D-arabinofuranosyl-cytosine as a white solid (1.10 g, 56.7%).
1H-NMR (DMSO-d6): δ 7.49 (d, 1H), 7.10 (br d, 2H), 6.10 (d, 1H), 5.69 (d, 1H), 5.58 (t, 2H), 4.89 (s, 2H), 4.37-4.15 (m, 2H), 4.01-3.89 (m, 3H), 3.36 (br s, 1H), 2.47 (t, 2H), 2.34 (t, 2H), 1.65-1.53 (m, 4H), 1.28 (br s, 6H)
13C-NMR (DMSO-d6): δ 172.7, 171.4, 165.5, 155.0, 142.8, 95.3, 92.5, 86.1, 81.7, 76.7, 74.2, 72.9, 63.7, 55.6, 33.3, 33.1, 28.2, 28.1, 24.3, 24.1
MS (ES): 566.0 [M+Na]+
Following the procedure outlined in example 32, Ara-C HCl (2.74 g, 9.8 mmol) was converted to the 5-′O-[(2,2,2-trichloroethyl)dodecanedioyl]ester as a white solid (3.72 g, 64.8%).
1H-NMR (DMSO-d6): δ 7.47 (d, 1H), 7.14 (br d, 2H), 6.08 (d, 1H), 5.68 (d, 1H), 5.61-5.58 (m, 2H), 4.87 (s, 2H), 4.33-4.14 (m, 2H), 3.96-3.88 (m, 3H), 3.39 (br s, 1H), 2.44 (t, 2H), 2.31 (t, 2H), 1.59-1.49 (m, 4H), 1.22 (br s, 12H)
13C-NMR (DMSO-d6): δ 172.8, 171.5, 165.5, 155.0, 142.8, 95.4, 92.6, 86.2, 81.8, 76.7, 74.2, 72.9, 63.7, 33.4, 33.1, 28.8, 28.7, 28.6, 28.4, 28.3, 24.4, 24.3
MS (ES): 610.2 [M+Na]+
A suspension of 5′-O-[(2,2,2-trichloroethyl)azelaoyl]1-β-D-arabinofuranosyl-cytosine (0.54 g, 1.0 mmol) in a mixture of THF (25 ml) and 1 M KH2PO4 (5 ml) was added to Zn-powder (0.66 g, 10.0 mmol) and stirred at room temperature for 24 hours. The mixture was filtered through a pad of kiselguhr and the filtrate evaporated in vacuo. The residue was transferred to a flash column with silica and separated with MeOH (30%) in CH2Cl2 as eluent system to give the free acid as a white powder (0.37 g, 89.0%).
1H-NMR (DMSO-d6): δ 7.45 (d, 1H), 7.08 (br d, 2H), 6.07 (d, 1H), 5.66 (d, 1H), 5.57 (br s, 1H), 4.31-4.13 (m, 2H), 3.96-3.86 (m, 3H), 3.27 (br s, 1H), 3.15 (s, 1H), 2.30 (t, 2H), 2.12 (t, 2H), 1.52-1.43 (m, 4H), 1.23 (br s, 6H)
13C-NMR (DMSO-d6): δ 172.8, 165.6, 155.1, 142.8, 92.6, 86.1, 81.7, 76.7, 74.3, 63.7, 48.6, 34.4, 33.4, 28.5, 28.4, 28.3, 24.7, 24.4
MS (ES): 436.0 [M+Na]+
Following the procedure outlined in Example 34, 5′-O-[(2,2,2-trichloroethyl)dodecanedioyl]1-β-D-arabinofuranosyl-cytosine (1.17 g, 2.0 mmol) was converted to the free acid as a white compound (0.77 g, 84.9%).
1H-NMR (DMSO-d6): δ 7.46 (d, 1H), 7.07 (br d, 2H), 6.08 (d, 1H), 5.66 (d, 1H), 5.55 (br s, 1H), 4.46 (d, 1H), 4.33-4.15 (m, 2H), 3.99-3.87 (m, 3H), 3.33 (br s, 2H), 2.31 (t, 2H), 2.07 (t, 2H), 1.54-1.45 (m, 4H), 1.23 (br s, 12H)
MS (ES): 478.0 [M+Na]+
Following the procedure outlined in Example 32, Gemcitabine HCl was reacted with monomethyl azelaoyl chloride to give the expected monoacylated product. The monoacylated product was identified on TLC (Rf=0.2, MeOH (10%) in CH2Cl2)
Following the procedure outlined in Example 30, hexadecanedioic acid (17.14 g, 59.84 mmol) was converted to the mono(2,2,2-trichloroethyl)ester as a yellow solid (4.48 g, 89.7%) as a yellow solid.
1H-NMR (CDCl3): δ 4.71 (s, 2H), 2.43 (t, 2H), 2.32 (t, 2H), 1.70-1.60 (m, 4H),
Following the procedure outlined in Example 32, Ara-C HCl (1.39 g, 5.0 mmol) was converted to the 5-′O-[(2,2,2-trichloroethyl)hexadecanedioyl]ester as a solid (0.83 g, 25.8%).
1H-NMR (DMSO-d6):
Following the example outlined in Example 34, 5′-O-[(2,2,2-trichloroethyl)hexadecanedioyl]1-β-D-arabinofuranosyl-cytosine (0.83 g, 1.29 mmol) was converted to the free acid as a white solid (0.51 g, 77.3%).
1H-NMR (DMSO-d6):
MS (ES): 534.2 [M+Na]+
To a solution of 5′-O-(hexadecanedioyl) 1-β-D-arabinofuranosyl-cytosine (from Example 39) (0.25 g, 0.5 mmol) in MeOH (10 ml) was added 1 M HCl in diethyl ether and stirred at room temperature overnight. The reaction mixture was evaporated in vacuo, CH2Cl2 (10 ml) added and washed with brine (2 ml). The organic layer was dried over Na2SO4, filtered and evaporated in vacuo. The residue was purified on a column of silica gel with MeOH (5-30%) in CH2Cl2 as the eluent system to give 5′-O-[(methyl)hexadecanedioyl]1-β-D-arabinofuranosyl-cytosine as a white solid (0.21 g, 80.0%).
1H-NMR (DMSO-d6):
MS (ES): 548.2 [M+Na]+
Following the procedure outlined in Example 32, gemcitabin HCl (1.49 g, 5.0 mmol) was converted to 5′-O-[(2,2,2-trichloroethyl)hexadecanedioyl]2′-Deoxy-2′, 2′-difluorocytidine as an oil (1.47 g, 44.3%)
1H-NMR (DMSO-d6):
Following the procedure outlined in Example 34, 5′-O-[(2,2,2-trichloroethyl)hexadecanedioyl]2′-Deoxy-2′, 2′-difluorocytidine (1.47 g, 2.21 mmol) was converted to the free acid as a white solid (0.11 g, 9.3%)
1H-NMR (DMSO-d6):
MS (ES): 532.0 [M+Na]+
Following the procedure outlined in Example 32, gemcitabin HCl (2.28 g, 6.0 mmol) was converted to 5′-O-[(2,2,2-trichloroethyl)dodecanedioyl]2′-Deoxy-2′,2′-difluorocytidine as an oil (0.84 g, 23.3%).
1H-NMR (DMSO-d6):
Following the procedure outlined in Example 34, 5′-O-[(2,2,2-trichloroethyl)dodecanedioyl]2′-Deoxy-2′,2′-difluorocytidine is converted to the free acid as a white solid.
A suspension of 5′-O-(azelaoyl) 1-β-D-arabinofuranosyl-cytosine (41.3 mg, 0.10 mmol) and N-methyl-D-glucamine (19.5 mg, 0.10 mmol) in H2O (1.0 ml) was heated under reflux to all was dissolved. The mixture was cooled to room temperature, freeze dried under vacuum to leave the meglumin salt as a solid.
Cytarabin Hydrochloride Injection 5.0 mg/ml:
A solution of cytarabin hydrochloride was prepared by dissolving the hydrochloride salt (5.0 mg) in a sterile saline solution (1.0 ml). The solution was shaken with a ESPE Capmix shaker for 60 seconds before injection.
A solution of 5′-O-(azelaoyl) 1-β-D-arabinofuranosyl-cytosine meglumine salt was prepared by dissolving N-methyl-D-glucamine (6.0 mg, 0.030 mmol) and 5′-O-(azelaoyl) 1-β-D-arabinofuranosyl-cytosine (8.5 mg, 0.020 mmol) in a sterile saline solution (1.0 ml). The solution was shaken with a ESPE Capmix shaker for 60 seconds before injection.
The solution for injection (azelaoyl derivative) from Example 46 was administered i.p. twice (0.1 ml) to 4 nude mice (20 g). The mice had implanted human colon cancer on the leg. The second injection was on day 3. The animals were observed for 13 days. All animals behaved normally and did not show any sign of toxicity.
The solutions (cytarabin and cytarabine azelaic derivative) described in Example 46 were injected as described in Example 47 (4 animals in each group). The size of the tumor was determined at day 13. The average tumor growth was higher for cytarabin treated mice than for mice treated with azelaic acid derivative.
The following protein-binding cytosine derivatives are prepared by methods already outlined (the alternative name for each compound is in italics):
| Number | Date | Country | Kind |
|---|---|---|---|
| 0420550.6 | Sep 2004 | GB | national |
| 0505498.6 | Mar 2005 | GB | national |
| Filing Document | Filing Date | Country | Kind | 371c Date |
|---|---|---|---|---|
| PCT/GB05/03559 | 9/15/2005 | WO | 00 | 9/28/2007 |
