Patent Grant
11512084
The present invention relates to degradation of organelles utilizing an autophagy mechanism.
Mitochondria are organelles essential for cell survival, and are involved in maintenance of calcium homeostasis, regulation of inflammation and cell growth, apoptosis, and the like in addition to an ATP production function.
When the functions of mitochondria are impaired, not only energy production is merely reduced, but the functions exemplified above are impaired. In addition, injured mitochondria excessively produce reactive oxygen species (ROS) to damage cells, to thereby induce cell death. For example, dysfunctions, such as a reduction in mitochondrial membrane potential, are found in Down syndrome, which is a chromosome abnormality, and genetic disorders that are collectively called mitochondrial diseases.
Meanwhile, cells selectively degrade and remove injured mitochondria by an autophagy mechanism (also called mitophagy). However, activity of autophagy is reduced by aging and the like, and hence there exist age-related diseases based on accumulation of injured mitochondria. Examples thereof include Parkinson's disease and cancer.
Under such background, attempts have been made to control mitophagy through the use of compounds, such as pharmaceuticals. Sirolimus (rapamycin) induces autophagy through mTORC1 complex inhibition to promote degradation of mitochondria. However, autophagy caused by sirolimus has poor selectivity for degradation targets, and hence is inefficient because mitochondria are just one of many degradation targets. In addition, there is a problem in that wide-ranging intracellular molecules other than mitochondria are simultaneously degraded, and hence normal physiological functions are affected.
Meanwhile, a group of compounds called uncouplers are also widely used for artificial promotion of mitophagy. The uncoupler is a molecule capable of injuring mitochondrial membranes, and can artificially produce a mitochondrial dysfunction state. Produced dysfunctional mitochondria need to be removed, and hence mitophagy is activated in cells. That is, the uncoupler has the following problem: the uncoupler has an action of further worsening mitochondrial injury due to a disease, and hence is unsuitable for therapeutic use.
NPL 1: “Importing Mitochondrial Proteins: Machineries and Mechanisms”, A. Chacinska, C. M. Koehler, D. Milenkovic, T. Lithgow, N. Pfanne, Cell, 138, 628-644 (2009)
NPL 2: Y. Kawazoe, H. Shimogawa, A. Sato, M. Uesugi, Angew. Chem. Int. Ed. 50, 5478-5481 (2011)
NPL 3: Kaizuka et al., Molecular Cell, 64, 835 (2016)
An object to be achieved by the present invention is to provide a novel degrader for mitochondria utilizing an autophagy mechanism.
Under such circumstances, the inventors of the present invention have made extensive investigations, and as a result, have found that the above-mentioned object can be achieved by using a compound or a salt thereof, the compound containing a ligand capable of binding to or accumulating in mitochondria and a specific substituent having a specific 1,9-dihydro-6H-purin-6-one ring structure.
Therefore, the present invention provides a degrader, a pharmaceutical, and a compound or a salt thereof as described in the following items:
Item 1. A degrader for injured mitochondria based on an autophagy mechanism, the degrader including a compound or a salt thereof, the compound containing a ligand capable of binding to or accumulating in mitochondria and a substituent represented by the following general formula (1):
where R1, R2, and R3 are identical to or different from each other, and each represent a hydrogen atom or a substituent, provided that when R1 represents hydrogen and R2 represents an amino group, a case in which R3 represents
is excluded.
Item 2. A pharmaceutical for preventing or treating a disease that is treatable by degradation of injured mitochondria based on an autophagy mechanism, the pharmaceutical including a compound or a salt thereof, the compound containing a ligand capable of binding to or accumulating in mitochondria and a substituent represented by the following general formula (1):
where R1, R2, and R3 are identical to or different from each other, and each represent a hydrogen atom or a substituent, provided that when R1 represents hydrogen and R2 represents an amino group, a case in which R3 represents
is excluded.
Item 3. The pharmaceutical according to Item 2, wherein the disease that is treatable by degradation of injured mitochondria based on an autophagy mechanism is a neurodegenerative disease, such as Parkinson's disease, Alzheimer's disease, amyotrophic lateral sclerosis (ALS), Huntington's chorea, progressive supranuclear palsy, dementia with Lewy bodies, striatonigral degeneration, olivopontocerebellar atrophy, spinocerebellar degeneration, or Pick's disease, cancer, an inflammatory disease, an age-related disease, a mitochondrial disease (e.g., MELAS, MERRF, chronic progressive external ophthalmoplegia, or Leigh's encephalomyelopathy), a metabolic disease, or Down syndrome.
Item 4. A compound or a salt thereof, the compound including a ligand capable of binding to or accumulating on a mitochondrial surface and a substituent represented by the following general formula (1):
where R1, R2, and R3 are identical to or different from each other, and each represent a hydrogen atom or a substituent, provided that when R1 represents hydrogen and R2 represents an amino group, a case in which R3 represents
is excluded,
the compound or the salt thereof being capable of inducing degradation of injured mitochondria based on an autophagy mechanism.
Item 5. The compound or the salt thereof according to Item 4, wherein the compound or the salt thereof is for use in prevention or treatment of a disease that is treatable by degradation of injured mitochondria based on an autophagy mechanism.
Item 6. A method of preventing or treating a disease that is treatable by degradation of injured mitochondria based on an autophagy mechanism, the method including administering, to a mammal, an effective dose of a compound or a salt thereof, the compound containing a ligand capable of binding to or accumulating in mitochondria and a substituent represented by the following general formula (1):
where R1, R2, and R3 are identical to or different from each other, and each represent a hydrogen atom or a substituent, provided that when R1 represents hydrogen and R2 represents an amino group, a case in which R3 represents
is excluded.
Item 7. A use of a compound or a salt thereof, the compound containing a ligand capable of binding to or accumulating in mitochondria and a substituent represented by the following general formula (1), for producing a preventive or therapeutic agent for a disease that is treatable by degradation of injured mitochondria based on an autophagy mechanism:
where R1, R2, and R3 are identical to or different from each other, and each represent a hydrogen atom or a substituent, provided that when R1 represents hydrogen and R2 represents an amino group, a case in which R3 represents
is excluded.
Item 8. The degrader according to Item 1, the pharmaceutical according to Item 2 or 3, the compound or the salt thereof according to Item 4 or 5, the method according to Item 6, or the use according to Item 7, wherein the ligand is a monovalent substituent obtained by removing one hydrogen atom from any one of the following compounds.
Item 9. The degrader according to Item 1, the pharmaceutical according to Item 2 or 3, the compound or the salt thereof according to Item 4 or 5, the method according to Item 6, the use according to Item 7, or the degrader, the pharmaceutical, the compound or the salt thereof, the method, or the use according to Item 8, wherein the ligand has a structure in which a substituent bonded to a tag molecule is bonded to a protein capable of accumulating in mitochondria, the protein being modified with the tag molecule bonded to the substituent.
Item 10. The degrader according to Item 1, the pharmaceutical according to Item 2 or 3, the compound or the salt thereof according to Item 4 or 5, the method according to Item 6, the use according to Item 7, or the degrader, the pharmaceutical, the compound or the salt thereof, the method, or the use according to Item 8 or 9, wherein the compound containing a ligand capable of binding to or accumulating in mitochondria and a substituent represented by the following general formula (1) is a compound represented by the following general formula (2):
where:
R1, R2, and R3 are as described above;
R4 represents a ligand capable of binding to or accumulating on a mitochondrial surface;
La and Lb are identical to or different from each other, and each represent a bond or a linker; and
“n” represents a natural number of from 1 to 10, provided that when R1 represents hydrogen and R2 represents an amino group, a case in which R3 represents
is excluded.
According to the present invention, the novel degrader for mitochondria based on an autophagy mechanism can be provided.
Compound or Salt thereof Capable of Inducing Degradation of Injured Mitochondria Based on Autophagy Mechanism
The present invention provides a compound or a salt thereof, the compound containing a ligand capable of binding to or accumulating on a mitochondrial surface and a substituent represented by the following general formula (1):
where R1, R2, and R3 are identical to or different from each other, and each represent a hydrogen atom or a substituent, provided that when R1 represents hydrogen and R2 represents an amino group, a case in which R3 represents
is excluded. In the present invention, the compound containing a ligand capable of binding to or accumulating in mitochondria and a substituent represented by the general formula (1) is sometimes referred to simply as “compound A.”.
Hereinafter, substituents have the following meanings, unless otherwise specified.
In the present invention, examples of the “substituent” include a hydrocarbon group that may be substituted, an amino group that may be substituted, a halogen atom, a cyano group, a nitro group, a heterocyclic group that may be substituted, an acyl group, a carbamoyl group that may be substituted, a thiocarbamoyl group that may be substituted, a sulfamoyl group that may be substituted, a hydroxy group that may be substituted, a sulfanyl group that may be substituted, and a silyl group that may be substituted.
Examples of the “hydrocarbon group” include a C1-6 alkyl group, a C2-6 alkenyl group, a C2-6 alkynyl group, a C3-10 cycloalkyl group, a C3-10 cycloalkenyl group, a C6-14 aryl group, and a C7-16 aralkyl group.
The “C1-6 alkyl group” refers to a linear or branched saturated hydrocarbon group having 1 to 6 carbon atoms. Examples thereof include methyl, ethyl, n-propyl, isopropyl, n-butyl, isobutyl, sec-butyl, tert-butyl, n-pentyl, isopentyl, neopentyl, 1-ethylpropyl, n-hexyl, isohexyl, and 2-ethylbutyl.
The “C2-6 alkenyl group” refers to a linear or branched hydrocarbon group having a double bond and having 2 to 6 carbon atoms. Examples thereof include ethenyl, 1-propenyl, 2-propenyl, 2-methyl-1-propenyl, 1-butenyl, 2-butenyl, 3-butenyl, 3-methyl-2-butenyl, 1-pentenyl, 2-pentenyl, 3-pentenyl, 4-pentenyl, 4-methyl-3-pentenyl, 1-hexenyl, 3-hexenyl, and 5-hexenyl.
The “C2-6 alkynyl group” refers to a linear or branched hydrocarbon group having a triple bond and having 2 to 6 carbon atoms. Examples thereof include ethynyl, 1-propynyl, 2-propynyl, 1-butynyl, 2-butynyl, 3-butynyl, 1-pentynyl, 2-pentynyl, 3-pentynyl, 4-pentynyl, 1-hexynyl, 2-hexynyl, 3-hexynyl, 4-hexynyl, 5-hexynyl, and 4-methyl-2-pentynyl.
The “C3-10 cycloalkyl group” refers to a cyclic alkyl group having 3 to 10 carbon atoms. Examples thereof include cyclopropyl, cyclobutyl, cyclopentyl, cyclohexyl, cycloheptyl, cyclooctyl, bicyclo[2.2.1]heptyl, bicyclo[2.2.2]octyl, bicyclo[3.2.1]octyl, and adamantyl.
The “C3-10 cycloalkenyl group” refers to a cyclic hydrocarbon group having a double bond and having 3 to 10 carbon atoms. Examples thereof include cyclopropenyl, cyclobutenyl, cyclopentenyl, cyclohexenyl, cycloheptenyl, and cyclooctenyl.
Examples of the “C6-14 aryl group” include phenyl, 1-naphthyl, 2-naphthyl, 1-anthryl, 2-anthryl, and 9-anthryl.
Examples of the “C7-16 aralkyl group” include benzyl, phenethyl, naphthylmethyl, and phenylpropyl.
Examples of the substituent in each of the “hydrocarbon group that may be substituted”, the “amino group that may be substituted”, the “heterocyclic group that may be substituted”, the “carbamoyl group that may be substituted”, the “thiocarbamoyl group that may be substituted”, the “sulfamoyl group that may be substituted”, the “hydroxy group that may be substituted”, the “sulfanyl group that may be substituted”, and the “silyl group that may be substituted” include: an amino group that may be substituted with a hydrocarbon group; a halogen atom; a cyano group; a nitro group; a heterocyclic group that may be substituted with a hydrocarbon group; an acyl group; a carbamoyl group that may be substituted with a hydrocarbon group; a thiocarbamoyl group that may be substituted with a hydrocarbon group; a sulfamoyl group; a hydroxy group that may be substituted with a hydrocarbon group; a sulfanyl group that may be substituted with a hydrocarbon group; and a silyl group that may be substituted with a hydrocarbon group. When the “hydrocarbon group that may be substituted”, the “amino group that may be substituted”, the “heterocyclic group that may be substituted”, the “carbamoyl group that may be substituted”, the “thiocarbamoyl group that may be substituted”, the “sulfamoyl group that may be substituted”, the “hydroxy group that may be substituted”, the “sulfanyl group that may be substituted”, or the “silyl group that may be substituted” has a substituent, the number of substituents is not particularly limited, but may be appropriately set to, for example, from 1 to 5, from 1 to 3, or 1.
Examples of the “halogen atom” include fluorine, chlorine, bromine, and iodine.
An example of the “heterocyclic group” is a seven- to ten-membered saturated or unsaturated heterocyclic group containing 1 to 4 heteroatoms each selected from the group consisting of a nitrogen atom, a sulfur atom, and an oxygen atom. More specific examples thereof include a thienyl group, a thiazolyl group, a furyl group, a piperidinyl group, a piperazinyl group, a pyridinyl group, a pyrrolinyl group, a morpholinyl group, an imidazolyl group, an indolyl group, a pyrimidinyl group, an oxazolyl group, a pyrrolidinyl group, an indolizinyl group, and a benzofuranyl group.
Examples of the “acyl group” include a formyl group, and an alkylcarbonyl group in which an alkyl moiety is the above-mentioned C1-6 alkyl group.
In the present invention, R1 represents preferably a hydrogen atom, a hydrocarbon group, or the like, more preferably a hydrogen atom, a C1-6 (preferably C1-3) alkyl group, or the like, still more preferably a hydrogen atom.
In the present invention, R2 represents preferably a hydrogen atom, a hydrocarbon group that may be substituted (preferably a hydrocarbon group that may be substituted with at least one kind selected from the group consisting of an amino group and a carbamoyl group, more preferably a C1-6 alkyl group that may be substituted with at least one kind selected from the group consisting of an amino group and a carbamoyl group), an amino group that may be substituted, a carbamoyl group that may be substituted, or the like; more preferably a substituted hydrocarbon group (preferably a hydrocarbon group substituted with at least one kind selected from the group consisting of an amino group and a carbamoyl group, more preferably a C1-6 alkyl group substituted with at least one kind selected from the group consisting of an amino group and a carbamoyl group), an amino group, a carbamoyl group, or the like; still more preferably a hydrocarbon group substituted with an amino group (preferably a C1-6 alkyl group substituted with an amino group) group, an amino group, or the like.
In the present invention, R3 is not particularly limited, but for example, represents preferably a hydrogen atom, a hydrocarbon group that may be substituted, or the like; more preferably a hydrogen atom, or a hydrocarbon (e.g., a C6-14 aryl group or a C7-16 aralkyl group) that may be substituted with a halogen; still more preferably a hydrocarbon (a C6-14 aryl group (preferably phenyl or naphthyl, more preferably phenyl) or a C7-16 aralkyl group (preferably a C7-12 phenylalkyl or a C11-17 naphthylalkyl, more preferably a C7-12 phenylalkyl) substituted with a halogen (preferably fluorine).
The “ligand capable of binding to or accumulating in mitochondria” means a ligand capable of binding to mitochondria by covalent bonding, hydrogen bonding, or the like or accumulating in mitochondria (in the inside of mitochondria or on the surface thereof). As such ligand, ligands known in the technical field to which the present invention belongs may be widely used. For example, many compounds capable of accumulating in mitochondria are known, and examples thereof include low-molecular-weight ligands capable of binding to proteins on the mitochondrial outer membrane, such as 8 kDa translocator protein (TSPO) and voltage-dependent anion channel (VDAC). In addition, as typified by Rhodamine dyes and triphenylphosphonium salts, it is also known that positively charged compounds accumulate in mitochondria. Also in Y. Kawazoe, H. Shimogawa, A. Sato, M. Uesugi, Angew. Chem. Int. Ed. 50, 5478-5481 (2011), there is a description of molecules that accumulate on the mitochondrial surface.
Examples of the ligand include a monovalent substituent obtained by removing one hydrogen atom from any one of the following compounds:
In addition, in a preferred embodiment of the present invention, in addition to the foregoing, examples of the ligand also include a monovalent group obtained by removing one hydrogen atom from a compound represented by the following formula, the group having a structure in which 1 to 5 (e.g., 1 to 3, 1 to 2, or 1) hydrogen atoms in a phenyl group in the formula are each substituted with a substituent (e.g., at least one kind of group selected from the group consisting of a linear or branched C1 to C6 alkyl group, a halogen, and a linear or branched C1 to C6 alkoxy group).
In the present invention, examples of the halogen include fluorine, chlorine, bromine, and iodine. In addition, in a preferred embodiment of the present invention, examples of the monovalent group obtained by removing one hydrogen atom from any one of the compounds given above as the ligand may include the following.
In addition, examples of the ligand also include, in addition to the foregoing, a substituent having a structure in which, in the following formula, 1 to 5 (e.g., 1 to 3, 1 to 2, or 1) hydrogen atoms in a phenyl group in the formula are each substituted with a substituent (e.g., at least one group selected from the group consisting of a linear or branched C1 to C6 alkyl group, a halogen, and a linear or branched C1 to C6 alkoxy group).
In addition, as the ligand, a protein capable of accumulating in the inside of mitochondria or on the surface thereof may also be utilized. An example of such protein is a protein having added thereto a signal sequence (mitochondrial targeting sequence). As the mitochondrial targeting signal sequence, sequences known in the technical field to which the present invention belongs may be widely used (e.g., “Importing Mitochondrial Proteins: Machineries and Mechanisms”, A. Chacinska, C. M. Koehler, D. Milenkovic, T. Lithgow, N. Pfanne, Cell, 138, 628-644 (2009)). When such protein is used as the ligand, a tag technology may be used in order to bond the ligand to the substituent represented by the general formula (1). Specifically, as the protein capable of accumulating in the inside of mitochondria or on the surface thereof, there may be used a fusion protein obtained by combining a tag protein and the mitochondrial targeting signal sequence. Examples of the tag protein include HaloTag (HT), SNAP-tag, CLIP-tag, and Ash-tag (assembly helper tag). Such fusion protein may be, for example, a fusion protein obtained by further fusing a fluorescent protein (e.g., EmGFP).
In such embodiment, an example of the ligand may be a ligand having a structure in which a substituent (e.g., in the case of using HaloTag, a halogen atom, or a hydrocarbon group substituted with a halogen atom) bonded to a tag molecule is bonded to a protein capable of accumulating in mitochondria, the protein being modified with the tag molecule bonded to the substituent.
In addition, in a typical embodiment of the present invention, an example of the compound containing a ligand capable of binding to or accumulating in mitochondria and a substituent represented by the following general formula (1) may be a compound represented by the following general formula (2) or a salt thereof:
where:
R1, R2, and R3 are as described above;
R4 represents a ligand capable of binding to or accumulating on a mitochondrial surface;
La and Lb are identical to or different from each other, and each represent a bond or a linker; and
“n” represents a natural number of from 1 to 10, provided that when R1 represents hydrogen and R2 represents an amino group, a case in which R3 represents
is excluded.
Herein, the compound represented by the general formula (2) is sometimes referred to simply as “compound A′”.
In such embodiment, the -La—O—(—CH2—CH2—O—)n-Lb- moiety serves as a linker for linking the ligand capable of binding to or accumulating in mitochondria and the substituent represented by the general formula (1).
When La represents a linker, an example of such linker is a chain linker whose main chain is formed of 1 to 15 atoms, preferably 1 to 10 atoms. An example of such chain linker may be a chain linker formed of at least one kind selected from the group consisting of —CH2—, —CH2═CH2—, —C≡C—, —C(═O)—, —NH—, —O—, —S—, —CH═N—, —N═CH—, —C(═S)—, and —C(═NH)— (Therefore, for example, one selected from the above-mentioned group may be used as the linker, or a combination of two or more (which may be of one kind or may be of two or more kinds) selected from the above-mentioned group may be used as the linker.). In addition, such linker preferably contains at least one kind of structure selected from the group consisting of an amide bond [—C(═O)—NH— or —NH—C(═O)—], an ether bond (—O—), a thioether bond (—S—), an ester bond [—C(═O)—O— or —O—C(═O)—], and a urethane bond [—NH—C(═O)— or —C(═O═)—NH—].
In addition, such linker may contain, in its main chain, one or two (preferably one) divalent cyclic structure(s) (e.g., a five-membered or six-membered unsaturated hydrocarbon ring group; or a five-membered or six-membered heterocyclic group having (preferably one to four, more preferably one to three of) at least one kind of heteroatom selected from the group consisting of nitrogen, oxygen, and sulfur).
As the five-membered or six-membered divalent unsaturated hydrocarbon ring group, for example,
and the like are given, and a phenylene group and the like are preferably given.
Examples of the five-membered or six-membered divalent heterocycle having (preferably one to four, more preferably two or three of) at least one kind of heteroatom selected from the group consisting of nitrogen, oxygen, and sulfur include divalent groups each obtained by removing two hydrogen atoms from pyrrole, pyrrolidine, pyrazole, triazole, pyridine, furan, pyran, thiophene, morpholine, or the like. Of those heterocycles, five-membered or six-membered divalent heterocyclic groups each having 1 to 3 (preferably 2 or 3) nitrogen atoms as the heteroatoms (e.g., divalent groups each obtained by removing two hydrogen atoms from a pyrazole ring or a triazole ring, more specifically, for example,
and the like) are given.
Of those divalent cyclic structures, preferred examples include divalent aromatic rings (including an aromatic hydrocarbon ring group and an aromatic heterocyclic group). As such divalent aromatic rings, divalent groups each obtained by removing two hydrogen atoms from a five- or six-membered ring, such as furan, pyrrole, or benzene, and the like may be given, and more specifically, for example,
and the like are given.
Such chain linker may be substituted with a substituent, and may be preferably substituted with, for example, at least one kind selected from the group consisting of a halogen, a hydroxy group, and a C1-6 alkyl group. When such chain linker is substituted, the number of substituents is not particularly limited, but may be appropriately designed within the range of, for example, from 1 to 3, from 1 to 2, or 1.
In the present invention, the expression “whose main chain is formed of 1 to 10 atoms” means that the number of atoms forming the main chain excluding hydrogen atoms is from 1 to 0.
Therefore, a case in which La represents the following structure:
—CH2—CH2—CH2—CH2—CH2—CH2—CH2—
may be expressed as a chain linker whose main chain is formed of 7 atoms.
In addition, a case in which La represents the following structure:
may also be expressed as a chain linker whose main chain is formed of 7 atoms.
In addition, a case in which La represents the following structure:
may be expressed as a chain linker whose main chain is formed of 9 atoms.
When Lb represents a linker, an example of such linker is a chain linker whose main chain is formed of 1 to 15 atoms, preferably 1 to 10 atoms. An example of such chain linker may be a chain linker formed of at least one kind selected from the group consisting of —CH2—, —CH2═CH2—, —C≡C—, —C(═O)—, —NH—, —O—, —S—, —CH═N—, —N═CH—, —C(═S)—, and —C(═NH)— (Therefore, for example, one selected from the above-mentioned group may be used as the linker, or a combination of two or more (which may be of one kind or may be of two or more kinds) selected from the above-mentioned group may be used as the linker.). Such linker preferably contains at least one kind of structure selected from the group consisting of an amide bond [—C(═O)—NH— or —NH—C(═O)—], an ether bond (—O—), a thioether bond (—S—), an ester bond [—C(═O)—O— or —O—C(═O)—], and a urethane bond [—NH—C(═O)— or —C(═O═)—NH—]. Any such linker may be substituted with a substituent, and may be preferably substituted with, for example, at least one kind selected from the group consisting of a halogen, a hydroxy group, a C1-6 alkyl group, and an amino group that may have, as a substituent, an alkyl group and/or an acyl group. When such chain linker is substituted, the number of substituents is not particularly limited, but may be appropriately designed within the range of, for example, from 1 to 3, from 1 to 2, or 1.
Also when Lb represents a linker, the linker may contain, in its main chain, one or two (preferably one) divalent cyclic structure(s) (e.g., a five-membered or six-membered unsaturated hydrocarbon ring group; or a five-membered or six-membered heterocyclic group having (preferably one to four, more preferably one to three of) at least one kind of heteroatom selected from the group consisting of nitrogen, oxygen, and sulfur). Examples of the five-membered or six-membered unsaturated hydrocarbon ring group; the five-membered or six-membered heterocyclic group having at least one kind of heteroatom selected from the group consisting of nitrogen, oxygen, and sulfur, and the like include those described above for La. In addition, also in Lb, preferred examples of the divalent cyclic structure include divalent aromatic rings (including an aromatic hydrocarbon ring group and an aromatic heterocyclic group), and more specifically, may include divalent groups each obtained by removing two hydrogen atoms from a five- or six-membered ring, such as furan, pyrrole, or benzene, and the like. Still more specifically, for example,
and the like are given.
Symbol “n” represents a natural number of from 1 to 10, preferably from 1 to 8, more preferably from 1 to 6, still more preferably from 1 to 5.
The compound according to the present invention is produced, for example, as shown in the following reaction formula-1:
where: R1, R2, R3, R4, La, Lb, and “n” are the same as described above; R5 and R6 represent groups that react with each other to be bonded to each other so as to form -Lb-; and R7 and R8 represent groups that react with each other to be bonded to each other so as to form -La-.
In Step 1, Compound A-2 may be obtained by allowing Compound A-1 and water to react with each other.
Such substitution reaction may be performed in an appropriate solvent or in the absence of a solvent by a method known per se or a method equivalent thereto. A reaction time is from 0.1 hour to 100 hours, preferably from 0.1 hour to 24 hours. A reaction temperature may be appropriately set to, for example, from 0° C. to the boiling point of the solvent, preferably from 0° C. to 100° C.
In Step 2, Compound A-3 may be obtained by N-alkylating Compound A-2. Such N-alkylation reaction may be performed in an appropriate solvent or in the absence of a solvent by a method known per se or a method equivalent thereto. A reaction time is from 0.1 hour to 100 hours, preferably from 0.1 hour to 24 hours. A reaction temperature may be appropriately set to, for example, from 0° C. to the boiling point of the solvent, preferably from 0° C. to 100° C.
In Step 3, Compound A-4 may be obtained by brominating Compound A-3. Such reaction may be performed in an appropriate solvent or in the absence of a solvent by a method known per se or a method equivalent thereto. A reaction time is from 0.1 hour to 100 hours, preferably from 0.1 hour to 24 hours. A reaction temperature may be appropriately set to, for example, from 0° C. to the boiling point of the solvent, preferably from 0° C. to 100° C.
In Step 4, Compound A-6 may be obtained by allowing Compound A-4 and Compound A-5 to react with each other. Such reaction may be performed in an appropriate solvent or in the absence of a solvent by a method known per se or a method equivalent thereto. A reaction time is from 0.1 hour to 100 hours, preferably from 0.1 hour to 24 hours. A reaction temperature may be appropriately set to, for example, from 0° C. to the boiling point of the solvent, preferably from 0° C. to 100° C. The use ratio of Compound A-5 may be appropriately set within the range of, for example, from 0.1 mol to 10 mol with respect to 1 mol of Compound A-4.
In Step 5, Compound A-8 may be obtained by allowing Compound A-6 and Compound A-7 to react with each other. Such reaction may be performed in an appropriate solvent or in the absence of a solvent by a method known per se or a method equivalent thereto. A reaction time is from 0.1 hour to 100 hours, preferably from 0.1 hour to 24 hours. A reaction temperature may be appropriately set to, for example, from 0° C. to the boiling point of the solvent, preferably from 0° C. to 100° C. The use ratio of Compound A-7 may be appropriately set within the range of, for example, from 0.1 mol to 10 mol with respect to 1 mol of Compound A-6.
In Step 6, the compound A′ may be obtained by allowing Compound A-8 and Compound A-9 to react with each other. Such reaction may be performed in an appropriate solvent or in the absence of a solvent by a method known per se or a method equivalent thereto. A reaction time is from 0.1 hour to 100 hours, preferably from 0.1 hour to 24 hours. A reaction temperature may be appropriately set to, for example, from 0° C. to the boiling point of the solvent, preferably from 0° C. to 100° C. The use ratio of Compound A-9 may be appropriately set within the range of, for example, from 0.1 mol to 10 mol with respect to 1 mol of Compound A-8.
In addition, the compound according to the present invention may also be produced as shown in the following reaction formula II:
where R1, R2, R3, R4, R5, R6, R7, R8, La, Lb, and “n” are the same as described above.
In Step 7, Compound A-10 may be obtained by allowing Compound A-9 and Compound A-7 to react with each other. Such reaction may be performed in an appropriate solvent or in the absence of a solvent by a method known per se or a method equivalent thereto. A reaction time is from 0.1 hour to 100 hours, preferably from 0.1 hour to 24 hours. A reaction temperature may be appropriately set to, for example, from 0° C. to the boiling point of the solvent, preferably from 0° C. to 100° C. The use ratio of Compound A-7 may be appropriately set within the range of, for example, from 0.1 mol to 10 mol with respect to 1 mol of Compound A-9.
In Step 8, the compound A′ may be obtained by allowing Compound A-10 and Compound A-6 to react with each other. Such reaction may be performed in an appropriate solvent or in the absence of a solvent by a method known per se or a method equivalent thereto. A reaction time is from 0.1 hour to 100 hours, preferably from 0.1 hour to 24 hours. A reaction temperature may be appropriately set to, for example, from 0° C. to the boiling point of the solvent, preferably from 0° C. to 100° C. The use ratio of Compound A-6 may be appropriately set within the range of, for example, from 0.1 mol to 10 mol with respect to 1 mol of Compound A-10.
Each of the compounds obtained in the respective steps of the above-mentioned production method may be subjected to the next step after having been isolated/purified by known separating/purifying means, such as concentration, reduced-pressure concentration, crystallization, solvent extraction, reprecipitation, or chromatography, or without being isolated/purified.
In the present invention, the salt of the compound A encompasses an acid addition salt and a salt with a base. Specific examples of the acid addition salt include: inorganic acid salts, such as a hydrochloride, a hydrobromide, a hydroiodide, a sulfate, a perchlorate, and a phosphate; organic acid salts, such as an oxalate, a malonate, a succinate, a maleate, a fumarate, a lactate, a malate, a citrate, a tartrate, a benzoate, a trifluoroacetate, an acetate, a methanesulfonate, a p-toluenesulfonate, and a trifluoromethanesulfonate; and acidic amino acid salts, such as a glutamate and an aspartate. Specific examples of the salt with a base include: alkali metal or alkaline earth metal salts, such as a sodium salt, a potassium salt, and a calcium salt; salts with organic bases, such as a pyridine salt and a triethylamine salt; and salts with basic amino acids, such as lysine and arginine. In addition, when the compound A is a cation, the salt of the compound A also encompasses a halide (e.g., a chloride) and the like.
In addition, in the present invention, when the compound A or the salt thereof has an isomer, such as an optical isomer, a stereoisomer, or a regioisomer, the present invention may encompass both of an invention using any of the isomers and an invention using a mixture of a variety of isomers, unless it is clearly specified which of the isomers is used.
In the present invention, the compound A may be present in the form of a hydrate or a solvate, and hence the compound of the present invention also encompasses such hydrate and solvate.
A solvent forming the solvate is exemplified by alcohols, such as ethanol and propanol, organic acids, such as acetic acid, esters, such as ethyl acetate, ethers, such as tetrahydrofuran and diethyl ether, ketones, such as acetone, and DMSO.
Pharmaceutical
The compound A or the salt thereof of the present invention is capable of inducing degradation of injured mitochondria by an autophagy mechanism. Accordingly, the present invention provides a pharmaceutical for preventing or treating a disease that is treatable by degradation of injured mitochondria, the pharmaceutical including the compound A or the salt thereof.
Examples of the disease that is treatable by degradation of injured mitochondria include a neurodegenerative disease, such as Parkinson's disease, Alzheimer's disease, amyotrophic lateral sclerosis (ALS), Huntington's chorea, progressive supranuclear palsy, dementia with Lewy bodies, striatonigral degeneration, olivopontocerebellar atrophy, spinocerebellar degeneration, or Pick's disease, cancer, an inflammatory disease, an age-related disease, a metabolic disease, a mitochondrial disease (e.g., MELAS, MERRF, chronic progressive external ophthalmoplegia, or Leigh's encephalomyelopathy), and Down syndrome.
In the present invention, the compound A or the salt thereof serving as the active ingredient of the present invention may be used alone as a pharmaceutical, or may be used as a pharmaceutical composition in combination with any of various pharmaceutically acceptable carriers (e.g., a tonicity agent, a chelating agent, a stabilizing agent, a pH regulator, a preservative, an antioxidant, a solubilizing agent, or a thickening agent).
Examples of the tonicity agent include: sugars, such as glucose, trehalose, lactose, fructose, mannitol, xylitol, and sorbitol; polyhydric alcohols, such as glycerol, polyethylene glycol, and propylene glycol; and inorganic salts, such as sodium chloride, potassium chloride, and calcium chloride. Those tonicity agents may be used alone or in combination thereof.
Examples of the chelating agent include: edetates, such as disodium edetate, calcium disodium edetate, trisodium edetate, tetrasodium edetate, and calcium edetate;
ethylenediaminetetraacetates; nitrilotriacetic acid or salts thereof; sodium hexametaphosphate; and citric acid. Those chelating agents may be used alone or in combination thereof.
An example of the stabilizing agent is sodium hydrogen sulfite.
Examples of the pH regulator include acids, such as hydrochloric acid, carbonic acid, acetic acid, and citric acid, and also include: alkali metal hydroxides, such as sodium hydroxide and potassium hydroxide; alkali metal carbonates or hydrogen carbonates, such as sodium carbonate; alkali metal acetates, such as sodium acetate; alkali metal citrates, such as sodium citrate; and bases, such as trometamol. Those pH regulators may be used alone or in combination thereof.
Examples of the preservative include: sorbic acid; potassium sorbate; parahydroxybenzoates, such as methyl parahydroxybenzoate, ethyl parahydroxybenzoate, propyl parahydroxybenzoate, and butyl parahydroxybenzoate; quaternary ammonium salts, such as chlorhexidine gluconate, benzalkonium chloride, benzethonium chloride, and cetylpyridinium chloride; alkylpolyaminoethylglycine; chlorobutanol; polyquad; polyhexamethylene biguanide; and chlorhexidine. Those preservatives may be used alone or in combination thereof.
Examples of the antioxidant include sodium hydrogen sulfite, dried sodium sulfite, sodium pyrosulfite, and concentrated mixed tocopherols. Those antioxidants may be used alone or in combination thereof.
Examples of the solubilizing agent include sodium benzoate, glycerol, D-sorbitol, glucose, propylene glycol, hydroxypropyl methylcellulose, polyvinylpyrrolidone, macrogol, and D-mannitol. Those solubilizing agents may be used alone or in combination thereof.
Examples of the thickening agent include polyethylene glycol, methyl cellulose, ethyl cellulose, carmellose sodium, xanthan gum, sodium chondroitin sulfate, hydroxyethyl cellulose, hydroxypropyl cellulose, hydroxypropyl methylcellulose, polyvinylpyrrolidone, and polyvinyl alcohol. Those thickening agents may be used alone or in combination thereof.
In addition, the pharmaceutical composition may further contain, in addition to the compound A or the salt thereof, a compound known to have a preventive or therapeutic action on the disease that is treatable by degradation of injured mitochondria. In addition, the pharmaceutical composition may further contain, in addition to the compound A or the salt thereof, a compound known or suggested to have an autophagy-inducing action. An example of such compound is sirolimus (rapamycin). In addition, another example of such compound is the compound described in Kaizuka et al., Molecular Cell, 64, 835 (2016). Those compounds may be used alone or in combination thereof.
In the embodiment of the pharmaceutical composition, the content of the compound A or the salt thereof in the composition is not particularly limited, and may be appropriately set within, for example, conditions such as 90 mass % or more, 70 mass % or more, 50 mass % or more, 30 mass % or more, 10 mass % or more, 5 mass % or more, and 1 mass % or more in terms of the content of the compound A.
A dosage form is not particularly limited, and examples thereof may include various dosage forms including: orally administered agents, such as a tablet, a pill, a capsule, a powder, a granule, and a syrup; and parenterally administered agents, such as an injection (e.g., intravenous injection, intramuscular injection, or local injection), a gargle, a drop, external preparations (an ointment, a cream, a patch, and an inhalant), and a suppository. Of the dosage forms, for example, orally administered agents (e.g., a tablet, a pill, a capsule, a powder, a granule, and a syrup) and external preparations (an ointment, a cream, a patch, and an inhalant) are preferred.
In the present invention, the dose of the compound A or the salt thereof varies depending on, for example, an administration route and the age, body weight, or symptom of a patient, and hence cannot be uniquely defined. However, the dose only needs to be such an amount that a daily dose for adults is generally about 5,000 mg or less, preferably about 1,000 mg or less, more preferably 500 mg or less in terms of the dose of the compound A. The lower limit of the dose of the compound A or the salt thereof is also not particularly limited, and may be appropriately set within, for example, such a range that a daily dose for adults is generally 1 mg or more, preferably 10 mg or more, more preferably 100 mg or more in terms of the dose of the compound A. When administered once daily, the compound A or the salt thereof only needs to be contained in the above-mentioned amount in a single dose. When administered three times daily, the compound A or the salt thereof only needs to be contained in an amount corresponding to one-third of the above-mentioned amount in a single dose.
The pharmaceutical of the present invention is administered to patients, such as mammals. Examples of the mammals include humans, monkeys, mice, rats, rabbits, cats, dogs, pigs, cattle, horses, and sheep.
Degrader for Injured Mitochondria
The present invention also provides a degrader for injured mitochondria based on an autophagy mechanism, the degrader including the compound A or the salt thereof. The active ingredient, dosage form, dose, and the like of the degrader are the same as those described above for the pharmaceutical of the present invention.
The present invention is further specifically described below by way of Examples, Test Examples, and Formulation Examples. However, the present invention is not limited thereto.
In the following Examples, the term “room temperature” refers to about 10° C. to about 35° C. The term “overnight” generally refers to 10 hours to 15 hours. In a reaction using a reagent or compound unstable against water or oxygen, a flask, syringe, cannula, and the like that had been dried by heating in advance were used, and the reaction was performed under a nitrogen atmosphere or under an argon atmosphere. Reduced-pressure concentration was performed using a diaphragm vacuum pump and a rotary evaporator. For high-performance liquid chromatography, there were used: JASCO PU-980 from JASCO Corporation as a pump; JASCO UV-4075 from JASCO Corporation as a UV detector; JASCO 807-IT from JASCO Corporation as an integrator; COSMOCIL 5C18-AR-II [Φ5 μm, 4.6 mm I.D.×150 mm] from Nacalai Tesque, Inc. as an analytical column; and COSMOCIL 5C18-AR-II Packed column [Φ5 μm, 20 mm I.D.×250 mm] from Nacalai Tesque, Inc. as a preparative column. A nuclear magnetic resonance spectrum was measured using JNM-ECA600 (600 MHz) manufactured by JEOL Ltd. For a 1H NMR spectrum, dimethyl sulfoxide (2.50 ppm) and methanol (3.30 ppm) were used as internal standards. Multiplicity was described with abbreviations: s (singlet), d (doublet), t (triplet), q (quartet), quin (quintet), and m (multiplet), and a broad signal was noted with brs. A coupling constant (J) was described in Hz. A proton peak of an alcohol, an amino group, a carboxylic acid, or the like, when too broad to be detected, is not described in some cases. For a high-resolution mass spectrum (HRMS), micro Tof focus (ESI-TOF) manufactured by Bruker was used. A protonated molecular ion is generally detected, but in the case of a salt, only a cation portion is detected.
In Examples below, the following abbreviations are used.
4-(4-Carboxy-phenyl)-1-methyl-pyridinium iodide (4.8 mg) was placed in a flask. Under an argon atmosphere at 40° C., DMF (95 μL), PyBOP (15.1 mg), TEA (4.1 μL), and diethylene glycol bis(3-aminopropyl) ether (6.4 μL) were added, and the mixture was stirred overnight. The reaction mixture was purified by HPLC (5C18-AR-II, mobile phase: water/acetonitrile (containing 0.1% TFA)) to afford the title compound (1.6 mg).
HRMS:
Calcd for C23H34N3O4 [M]+: 416.2544, found 416.2518
1H NMR (600 MHz, DMSO-d6) δ 1.16 (1H, t, J=7.3 Hz), 1.23-1.25 (1H, m), 1.73-1.79 (4H, m), 2.84 (2H, quin, J=5.5 Hz), 3.44-3.53 (12H, m), 4.33 (3H, s), 7.65 (2H, brs), 8.05 (2H, d, J=8.7 Hz), 8.16 (2H, d, J=8.7 Hz), 8.54 (2H, d, J=6.8 Hz), 8.70 (1H, t, 5.5 Hz), 9.04 (2H, d, J=6.8 Hz).
4-(4-(3-(2-(2-(3-Aminopropoxy)ethoxy)ethoxy)propylcarbamoyl)phenyl)-1-methylpyridinium trifluoroacetate (1.6 mg) was placed in a flask. Under an argon atmosphere, DMF (20 μL), PyBOP (3.1 mg), TEA (0.84 μL), and (R)-2-amino-3-(2-amino-9-(4-fluorobenzyl)-6-oxo-6,9-dihydro-1H-purin-8-ylthio)propanoic acid (FBnNAC) (2.6 mg) were added, and the mixture was stirred at room temperature for 7 hours. The reaction mixture was purified by HPLC (5C18-AR-II, mobile phase: water/acetonitrile (containing 0.1% TFA)) to afford the title compound (1.89 mg).
HRMS:
Calcd for C40H49FN9O7S [M]+: 818.3454, found 818.3487
1H NMR (600 MHz, DMSO-d6) δ 1.83 (3H, s), 3.3-3.5 (12H, m), 1.58 (2H, quin, J=6.8 Hz), 1.74-1.77 (2H, m), 3.06-3.08 (6H, m), 4.32 (3H, s), 4.41-4.45 (1H, m), 5.06 (2H, s), 6.54 (2H, brs), 7.12-7.15 (4H, m), 8.02 (1H, t, J=5.5 Hz), 8.05 (2H, d, J=8.3 Hz), 8.15 (2H, d, J=8.3 Hz), 8.41 (1H, d, J=8.3 Hz), 8.53 (2H, d, J=6.4 Hz), 8.67 (1H, t, J=5.5 Hz), 9.03 (2H, d, J=6.4 Hz), 10.7 (1H, s).
Oxo-(2-phenyl-1H-indol-3-yl)-acetyl chloride (0.57 mg) was placed in a flask. Under an argon atmosphere at 0° C., DMF (6.8 μL), TEA (0.45 μL), and FBnNAC-linker (1.7 mg) were added, and the mixture was increased in temperature to room temperature and stirred for 7 hours. The reaction mixture was purified by HPLC (5C18-AR-II, mobile phase: water/acetonitrile (containing 0.1% TFA)) to afford the title compound (1.9 mg).
HRMS:
Calcd for C43H48FN9O8S [M+H]+: 870.3409, found 870.3396
1H NMR (600 MHz, DMSO-d6) δ 1.42 (2H, quin, J=6.9 Hz), 1.59 (2H, quin, J=6.9 Hz), 1.83 (3H, s), 2.37-2.38 (2H, m), 2.52-2.60 (2H, m), 3.3-3.5 (16H, m), 4.42-4.44 (1H, m), 5.06 (2H, s), 7.13-7.16 (2H, m), 7.19 (2H, m), 7.21-7.27 (2H, m), 7.46-7.48 (4H, m), 7.54-7.55 (2H, m), 8.02 (1H, t, J=5.5 Hz), 8.06 (1H, d, J=7.8 Hz), 8.40 (1H, d, J=8.2 Hz), 8.43 (1H, t, J=5.5 Hz), 10.6 (1H, s), 12.4 (1H, s).
3-Carboxy-4-(6-(dimethylamino)-3-(dimethyliminio)-3H-xanthen-9-yl)benzoate (2.0 mg) was placed in a flask. Under an argon atmosphere, DMF (35.2 μL), PyBOP (1.9 mg), TEA (1.0 μL), and FBnNAC-linker (2.3 mg) were added, and the mixture was stirred at room temperature for 6 hours. Subsequently, the mixture was increased in temperature to 40° C. and further stirred for 4 hours. The reaction mixture was purified by HPLC (5C18-AR-II, mobile phase: water/acetonitrile (containing 0.1% TFA)) to afford the title compound (2.1 mg).
HRMS:
Calcd for C52H60FN10O10S [M]+: 1035.4193, found 1035.4186
1H NMR (600 MHz, DMSO-d6) δ 1.59 (2H, quin, J=7.1 Hz), 1.80-1.82 (5H, m), 2.89-2.90 (4H, m), 3.06-3.09 (14H, m), 3.27-3.50 (12H, m), 4.41-4.45 (1H, m), 5.06 (2H, s), 6.54 (2H, brs), 7.12-7.17 (4H, m), 7.58-7.60 (4H, m), 7.97-7.98 (1H, m), 8.02 (1H, t, J=5.5 Hz), 8.29 (1H, d, J=1.8 Hz) 8.35 (1H, dd, J=1.8, 8.2 Hz), 8.42 (1H, d, J=8.2 Hz), 8.71 (2H, s), 8.87 (1H, t, J=5.5 Hz), 10.66 (1H, s)
Mitochondrial Targeting Sequence
HeLa cells cultured in Dulbecco's Modified Eagle Medium (DMEM) were transfected with a plasmid pEmGFP-HaloTag-Omp25 encoding EmGFP-HaloTag-Omp25, and were allowed to stably express the protein. (R)-2-Acetamido-3-(2-amino-9-(4-fluorobenzyl)-6-oxo-6,9-dihydro-1H-purin-8-ylthio)-N-(21-chloro-3,6,9,12,15-pentaoxahenicosyl)propanamide was added thereto at a final concentration of 15 μM, and allowed to react with EmGFP-HaloTag-Omp25 under the conditions of 37° C./5% CO2 for 4 hours to synthesize the title compound.
pEmGFP-HaloTag-Omp25 sequence information (SEQ ID NO: 1) is illustrated in
HeLa cells stably expressing EmGFP-HaloTag-Omp25 were seeded in Dulbecco's Modified Eagle Medium (DMEM) and cultured for 24 hours. The cells were divided into two groups. (R)-2-Acetamido-3-(2-amino-9-(4-fluorobenzyl)-6-oxo-6,9-dihydro-1H-purin-8-ylthio)-N-(21-chloro-3,6,9,12,15-pentaoxahenicosyl)propanamide was added to an experimental group at a final concentration of 15 μM, followed by incubation under the conditions of 37° C./5% CO2 for 4 hours to synthesize the molecule of Example 5. In this case, a control group, to which no drug was added, was a group of cells free of the molecule of Example 5. Next, an uncoupler CCCP was added at a final concentration of 10 to both of the control group and the experimental group, followed by incubation for 4 hours to induce mitochondrial injury. The cells were washed with PBS and treated with a cell lysis solution containing a protease inhibitor to afford a cell extract. The cell extract was subjected to SDS-PAGE, and the level of a protein UQCRC1 present in the matrix of mitochondria was detected by western blotting. The relative value of the UQCRC1 level in the cells of the experimental group with respect to the control group was adopted as an activity value. The level of actin was used as an internal standard. The results are shown in
In order to cause mitochondrial injury, in this case, the uncoupler CCCP was used as a typical experimental condition. CCCP induces an abnormality in mitochondrial membrane potential.
Assessment Method for Cytoprotective Effect of Compound Synthesized in Example 5 Against Mitochondrial Injury
HeLa cells stably expressing EmGFP-HaloTag-Omp25 were seeded in Dulbecco's Modified Eagle Medium (DMEM) and cultured for 24 hours. The cells were divided into two groups. (R)-2-Acetamido-3-(2-amino-9-(4-fluorobenzyl)-6-oxo-6,9-dihydro-1H-purin-8-ylthio)-N-(21-chloro-3,6,9,12,15-pentaoxahenicosyl)propanamide was added to an experimental group at a final concentration of 15 μM, followed by incubation under the conditions of 37° C./5% CO2 for 4 hours to synthesize the molecule of Example 5. In this case, a control group, to which no drug was added, was a group of cells free of the molecule of Example 5. Next, the uncoupler CCCP was added at a final concentration of 10 to both of the control group and the experimental group, followed by incubation for 4 hours to induce mitochondrial injury. The cells of each group were washed with PBS and subjected to fixing treatment with 4% paraformaldehyde, and then cell viability was calculated using a commercially available TUNEL apoptosis analysis kit (AAT Bioquest, Inc.). Viability (%) under each condition when the cell viability of the control group is defined as 100(%) is shown in
Cell Viability under Condition of Treating Cells with Indole-FBn and CCCP (Test Group):
HeLa cells seeded in Dulbecco's Modified Eagle Medium (DMEM) in a 96-well plate at 30,000 cells/well were incubated under the conditions of 37° C./5% CO2 overnight. Indole-FBn was added to the medium at a final concentration of 1 μM, followed by further incubation for 10 hours. At this time, nuclear staining by Hoechst33342 staining was performed for 30 minutes from 9 hours and 30 minutes to 10 hours after the addition of Indole-FBn.
Subsequently, the uncoupler CCCP was added at a final concentration of 10 μM, followed by further incubation for 2 hours to induce mitochondrial injury. Cells in each of which DNA fragmentation was found in the nucleus were judged to be dead cells, and cell viability was calculated by the following equation.
Cell viability (%)=100×(number of cells in which DNA fragmentation is observed)/(total number of cells)
The cell viability immediately before the CCCP treatment and the cell viability after 2 hours of the CCCP treatment are shown as a bar graph to enable comparison.
Cell Viability Under Condition of Not Treating Cells with Indole-FBn (Control Group):
HeLa cells seeded in Dulbecco's Modified Eagle Medium (DMEM) in a 96-well plate at 30,000 cells/well were incubated under the conditions of 37° C./5% CO2 for 1 day, and then subjected to nuclear staining by Hoechst33342 staining. Subsequently, the uncoupler CCCP was added to half the wells at a final concentration of 10 μM, followed by further incubation for 2 hours to induce mitochondrial injury (non-Indole-FBn-treated and CCCP-treated condition). Cells in each of which DNA fragmentation was found in the nucleus were judged to be dead cells, and cell viability was calculated. In addition, cell viability was also calculated for the non-CCCP-treated wells (non-treated condition for both Indole-FBn and CCCP). The results are shown in
The results of the above-mentioned experiment revealed that the addition of Indole-FBn significantly suppressed cell death due to mitochondrial injury.
Bafilomycin A1 (Baf A1) is known to inhibit autophagy via lysosome function inhibition. In view of this, in the above-mentioned experimental operations, Baf A1 was allowed to coexist, and the involvement of the autophagy mechanism was confirmed as described below. To HeLa cells incubated in DMEM medium overnight, Baf A1 was added in advance, 2 hours before Indole-FBn treatment, so as to have a final concentration of 200 nM. Without the removal of Baf A1 by washing, Indole-FBn was added to the medium, and the rest of the experiment was performed in conformity with the above-mentioned operations (treated condition with all of Indole-FBn, CCCP, and Baf A1). As a result, it was revealed that the cytoprotective effect exhibited by Indole-FBn under the CCCP-treated condition was significantly inhibited by the autophagy inhibitor Baf A1.
Data in the bar graph is mean±SEM obtained from three independent trials, and for P-values in Student's t-test, p<0.01 is represented by ** and p<0.001 is represented by ***.
4-(1-Methylpyridinium-4-yl)benzoate (2.00 mg) was placed in a flask. Under an argon atmosphere, DMF (0.95 mL), PyBOP (9.84 mg), DIPEA (4.90 μL), and 2-amino-8-[1-(3-{2-[2-(3-amino-propoxy)-ethoxy]-ethoxy}-propyl)-1H-pyrazol-4-yl]-9-(4-fluoro-benzyl)-1,9-dihydro-purin-6-one (4.95 mg) were added, and the mixture was stirred at room temperature for 8 hours. The reaction mixture was purified by HPLC (5C18-AR-II, mobile phase: water/acetonitrile (containing 0.1% TFA)) to afford the title compound (1.75 mg).
HRMS:
Calcd for C38H43FN9O5 [M−CF3COO−]+: 724.3366, found 724.3366
1H NMR (600 MHz, methanol-d4) δ 1.89-1.85 (2H, quin, J=6.42 Hz), 2.07-2.03 (2H, quin, J=6.42 Hz), 3.35-3.33 (2H, t, J=5.52 Hz), 3.50-3.47 (4H, m), 3.64-3.57 (8H, m), 4.29-4.26 (2H, t, J=6.9 Hz), 4.42 (3H, s), 5.50 (2H, s), 7.09-7.04 (2H, t, J=8.7 Hz), 7.18-7.16 (2H, d, J=5.52 Hz), 7.84 (1H, s), 8.01-8.00 (2H, d, J=6.9 Hz), 8.05-8.03 (2H, d, J=6.9 Hz), 8.08 (1H, s), 8.40 (2H, d, J=6.72 Hz), 8.90 (2H, d, J=6.9 Hz).
HRMS:
Oxo-(2-phenyl-1H-indol-3-yl)-acetic acid (7.5 mg) and 2-amino-8-[1-(3-{2-[2-(3-amino-propoxy)-ethoxy]-ethoxy}-propyl)-1H-pyrazol-4-yl]-9-(4-fluoro-benzyl)-1,9-dihydro-purin-6-one (15 mg) were placed in a flask. Under an argon atmosphere, DMF (2.8 mL), PyBOP (22 mg), and DIPEA (15 μL) were added, and the mixture was stirred at room temperature for 13 hours. The reaction mixture was concentrated under reduced pressure, and the resultant residue was purified by HPLC (5C18-AR-II, mobile phase: water/acetonitrile (containing 0.1% TFA)) to afford the title compound (9.5 mg).
Calcd for C41H42FN9O6 [M+H]+: 776.3315, found 776.3315
1H NMR (600 MHz, methanol-d4) δ 1.51 (2H, quin, J=6.4 Hz), 2.05 (2H, quin, J=6.4 Hz), 2.92 (2H, t, J=6.8 Hz), 3.32 (2H, t, J=5.9 Hz), 3.41 (2H, t, J=5.9 Hz), 3.44-3.46 (2H, m), 3.52-3.54 (4H, m), 3.55-3.57 (2H, m), 4.27 (2H, t, J=6.8 Hz), 5.47 (2H, s), 7.02-7.07 (2H, m), 7.17-7.21 (3H, m), 7.23-7.25 (1H, m), 7.42-7.49 (4H, m), 7.54-7.56 (2H, m), 7.88 (1H, s), 8.08-8.10 (1H, m), 8.19 (1H, s).
[9-(2,4-Dicarboxy-phenyl)-6-dimethylamino-xanthen-3-ylidene]-dimethyl-ammonium trifluoroacetate (4.4 mg) and 2-amino-8-[1-(3-{2-[2-(3-amino-propoxy)-ethoxy]-ethoxy}-propyl)-1H-pyrazol-4-yl]-9-(4-fluoro-benzyl)-1,9-dihydro-purin-6-one (4.2 mg) were placed in a flask. Under an argon atmosphere, DMF (0.8 mL), PyBOP (9.4 mg), and DIPEA (6.3 μL) were added, and the mixture was stirred at room temperature for 5 hours. The reaction mixture was concentrated under reduced pressure, and the resultant residue was purified by HPLC (5C18-AR-II, mobile phase: water/acetonitrile (containing 0.1% TFA)) to afford the title compound (1.6 mg).
HRMS:
Calcd for C50H54FN10O8 [M−CF3COO−]+: 941.4105, found 941.4105
1H NMR (600 MHz, methanol-d4) δ 1.92 (2H, quin, J=6.4 Hz), 2.06 (2H, quin, J=6.4 Hz), 3.30-3.32 (12H, m), 3.34-3.36 (2H, m), 3.50-3.55 (4H, m), 3.60-3.66 (8H, m), 4.30 (2H, t, J=6.4 Hz), 5.52 (2H, s), 6.97 (2H, d, J=2.3 Hz), 7.02-7.12 (6H, m), 7.19-7.22 (2H, m), 7.52 (1H, d, J=8.3 Hz), 7.88 (1H, s), 8.18 (1H, s), 8.23 (1H, dd, J=1.8, 5.9 Hz), 8.73 (1H, d, J=1.8 Hz).
3-(3-{2-[2-(3-Amino-propoxy)-ethoxy]-ethoxy}-propylamino)-N-[4-(3-amino-6-thiophen-2-yl-4-trifluoromethyl-thieno[2,3-b]pyridine-2-carbonyl)-phenyl]-2-oxo-propionamide (1.6 mg) was placed in a flask, and under an argon atmosphere, DMF (45 μL), TEA (0.7 μL), and FBnNAC (1.0 mg) were added. The mixture was stirred at room temperature for 5 hours, and then PyBOP (2.9 mg) and TEA (0.7 μL) were added. The mixture was stirred overnight. The reaction mixture was purified by HPLC (5C18-AR-II, mobile phase: water/acetonitrile (containing 0.1% TFA)) to afford the title compound (1.1 mg).
HRMS:
Calcd for C48H49FN11O9S3 [M+H]+: 1096.2891, found 1096.2892
1H NMR (600 MHz, DMSO-d6) δ 1.57-1.62 (2H, quin, J=6.9 Hz), 1.72-1.76 (2H, quin, J=7.2 Hz), 1.82 (3H, s), 3.26-3.45 (18H, m), 4.42-4.46 (1H, m), 5.06 (2H, s), 6.52 (2H, brs), 7.12-7.15 (2H, m), 7.18-7.20 (2H, m), 7.26-7.27 (1H, dd, J=3.67, 5.04 Hz), 7.73 (2H, brs), 7.86-7.87 (1H, dd, 0.92, 5.04 Hz), 7.82-7.84 (2H, d, J=8.71 Hz), 8.00-8.01 (2H, d, J=8.71 Hz), 8.03 (1H, t, J=5.61 Hz), 8.26-8.27 (1H, dd, J=0.91, 3.66 Hz), 8.33 (1H, s), 8.40-8.41 (1H, d, J=8.25 Hz), 9.03 (1H, t, J=6.00 Hz), 10.64 (1H, s), 10.94 (1H, s).
(Living Cell Imaging Method)
HeLa cells cultured in Dulbecco's Modified Eagle Medium (DMEM) were transfected with the plasmid pEmGFP-HaloTag-Omp25 containing a gene sequence encoding the EmGFP-HaloTag-Omp25 fusion protein localized on the mitochondrial outer membrane, and were allowed to stably express the protein. As a result, mitochondria in the cells were able to be observed using green fluorescence as an indicator.
A red fluorescent dye MitoTracker Red CMXRos (Thermo Fisher Scientific, M7513) was added thereto, followed by incubation for 30 minutes to stain mitochondria. At this stage, the mitochondria in the cells had been stained in two colors by EmGFP-HaloTag-Omp25 and MitoTracker Red CMXRos. Subsequently, MitoTracker Red CMXRos in the medium was removed by medium exchange. Mitochondria to be biosynthesized after this operation can only be detected with green fluorescence, and are not to be detected with red fluorescence. This difference was utilized to observe the degradation process of mitochondria by living cell imaging.
The cells were divided into two groups. Indole-FBn was added to an experimental group at a final concentration of 10 Indole-FBn was not added to a control group. In order to observe living cells at a fixed point for a long period of time, a culture vessel was fixed to a stage-top incubator (37° C., 5% CO2) mounted on a fluorescence microscope (KEYENCE, BX9000), and all the subsequent operations were performed on the microscope. After 10 hours from the addition of Indole-FBn, 10 CCCP was simultaneously added to the experimental group and the control group, and incubation was continued.
The signals of EmGFP-HaloTag-Omp25 and MitoTracker Red CMXRos at the time of the addition of Indole-FBn (−10 h), the time of the addition of CCCP (0 h), 2 hours after the addition of CCCP (+2 h), 4 hours after the addition of CCCP (+8 h), and 16 hours after the addition of CCCP (+16 h) are shown in
As apparent from the graphs, in the cells of the Indole-FBn-treated group, green and red signal intensities were reduced after the addition of CCCP (2 h, 8 h). This indicates that injured mitochondria were degraded when CCCP was added. In addition, a comparison of the graphs for 8 hours and 16 hours after the addition of CCCP showed that, only in the Indole-FBn-treated group, the green fluorescence intensity was increased, indicating the production of new mitochondria.
The living cell imaging experiment described above showed that Indole-FBn promoted both the removal of injured mitochondria and the production of new mitochondria.
JC-1 Staining
Detroit532 cells, which were Down syndrome patient foreskin-derived fibroblasts, were cultured in Eagle's Minimum Essential Medium. The cells were divided into two groups. A compound (Indole-FBn) was added to an experimental group at a final concentration of 10 μM, and was not added to a control group, followed by incubation for 3 days (37° C., 5% CO2). The cells of each group were each stained with JC-1 (abcam, 113850).
The JC-1 dye accumulates in mitochondria having a normal membrane potential to emit red fluorescence. Meanwhile, its localization is lost from mitochondria having an abnormal membrane potential and green fluorescence is emitted. That is, in a JC-1 staining image, a lower “green/red fluorescence intensity ratio” means that the membrane potential of mitochondria is kept more normal. Staining images were analyzed with ImageJ (National Institute of Health), and the “green/red fluorescence intensity ratio” is shown as a graph. The results are shown in
The results show that the quality of mitochondria reduced by a disease as in, for example, Down syndrome-derived cells is significantly improved by adding the compound.
Assessment of Mitophagy Induction with Indole-FBn in Down Syndrome Patient-Derived Detroit532 Cells
In order to confirm that the Indole-FBn compound treatment in Example 14 induces the degradation (mitophagy) of mitochondria, analysis was performed using Mtphagy dye (Dojindo, MD01) as a mitophagy detection kit. The use of this reagent allows mitochondria under mitophagy degradation to be selectively detected as bright spots under a fluorescence microscope. A larger number of bright spots per cell indicates the occurrence of more active mitophagy.
Mtphagy dye was added to Detroit532 cells. After 30 minutes from the addition, Mtphagy dye was removed by washing, the medium was changed to a fresh one, and Indole-FBnG was added at a final concentration of 10 μM. Meanwhile, a group of cells treated with DMSO was used as a control group. After 24 hours from the addition of Indole-FBn, bright spots of Mtphagy Dye were observed with a fluorescence microscope (
Assessment of Cytoprotective Effect of Indole-FBnPYR (Example 10) Against Mitochondrial Injury
HeLa cells were seeded in Dulbecco's Modified Eagle Medium (DMEM) and cultured for 24 hours. The cells were divided into two groups. Indole-FBnPYR was added to an experimental group at a final concentration of 0.1 μM, followed by incubation under the conditions of 37° C./5% CO2 for 4 hours. In this case, a control group, to which Indole-FBnPYR was not added, was a group of cells free of any drug. Next, the uncoupler CCCP was added at a final concentration of 10 to both of the control group and the experimental group, followed by incubation for 10 hours to induce mitochondrial injury. The cells of each group were washed with PBS and subjected to fixing treatment with 4% paraformaldehyde, and then cell viability was calculated using a TUNEL apoptosis analysis kit (Promega, DeadEnd Fluorometric TUNEL System). The results are shown in
Error bars represent standard errors (n=3).
| Number | Date | Country | Kind |
|---|---|---|---|
| JP2017-135086 | Jul 2017 | JP | national |
| Filing Document | Filing Date | Country | Kind |
|---|---|---|---|
| PCT/JP2018/025941 | 7/9/2018 | WO |
| Publishing Document | Publishing Date | Country | Kind |
|---|---|---|---|
| WO2019/013181 | 1/17/2019 | WO | A |
| Number | Name | Date | Kind |
|---|---|---|---|
| 5625056 | Genieser et al. | Apr 1997 | A |
| 20100129357 | Garcia-Martinez et al. | May 2010 | A1 |
| Number | Date | Country |
|---|---|---|
| 0 156 559 | Oct 1985 | EP |
| 3 578 549 | Dec 2019 | EP |
| 2015-535213 | Dec 2015 | JP |
| 2009063235 | May 2009 | WO |
| 2012154975 | Nov 2012 | WO |
| 2014041111 | Mar 2014 | WO |
| 2018143403 | Aug 2018 | WO |
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| 20200223848 A1 | Jul 2020 | US |
