The invention relates to cluster assays, in particular cluster assays based on rotational actuation of clusters of magnetic particles.
Tests in in vitro diagnostics can have several assay formats. Cluster assays are a class of assays in which the amount of formed particle clusters is indicative of the presence and/or concentration of biological components in the sample. Cluster assays are attractive because of the rapid bulk kinetics, ease of fabrication and low costs.
An issue with cluster assays is the lack of sensitivity. One way to improve the sensitivity is by performing cluster assays with magnetic particles. An advantage of using magnetic particles is that field-induced chains can be formed during incubation. This has, e.g., been shown by Baudry et al. “Acceleration of the recognition rate between grafted ligands and receptors with magnetic forces”, Proc. Natl. Acad. Sci. 103, 2006, p. 16076-16078.
In order to detect very low concentrations of clusters in a background of other magnetic particles when performing cluster assays, WO 2010/026551 A1 suggests to selectively actuate clusters of superparamagnetic particles formed due to an analyte by applying a rotating magnetic field.
According to WO 2010/026551 A1, a suspension of superparamagnetic particles, e.g. beads, in a fluid to be analyzed is provided, wherein the superparamagnetic particles are coated with a bioactive agent. The particles are then allowed to form clusters due to an analyte present within the fluid. Subsequently, clusters of superparamagnetic particles are selectively actuated by applying a rotating magnetic field. The amplitude of the magnetic field varies over time. Preferably, the frequency of the rotating magnetic field is below a critical frequency so that clusters of a specific size rotate at the same frequency as the external field. Finally, the selectively actuated clusters are detected. WO 2010/026551 A1 further provides an apparatus for performing a cluster assay according to the method described above.
In a cluster assay of the above-described type based on rotational actuation of clusters of magnetic particles, there is still a need to selectively actuate clusters of a specific size in a highly controlled way. Specifically, there is a need to detect clusters of different sizes and to distinguish different cluster sizes.
Clusters in solution can be detected by optical scattering. When directing light to the solution, the cross-section of the clusters exposed to the incoming light beam varies depending on the orientation of the clusters because of their elongated shape. The amount of light scattered by the clusters thus depends on the orientation of the clusters with respect to the incoming light beam. Single particles contribute negligibly to the scattered light because of their spherical shape.
When applying an external, rotating magnetic field, as it is done for selectively actuating clusters in the method described in WO 2010/026551 A1, each cluster of a given length is able to rotate synchronously with the external field up to a critical frequency, beyond which the net rotation rate decreases. During a full rotation, the clusters expose the same area to the incoming light beam twice per period. For linear clusters, and in particular two-particle clusters, rotating around an axis perpendicular to the incoming light beam, an area substantially corresponding to the cross section of only a single particle is exposed to the incoming light beam twice per period, since the other particles are covered by the particle. Accordingly, the scattered light intensity is modulated at twice the frequency of the external magnetic field.
The scattered light can be of the same wavelength as the input light, but can also be of a different wavelength. For example, fluorescent particles or fluorescently-labelled particles can be used, which irradiate light at a different wavelength than the wavelength of the input light beam. Wavelength filters can be used in the detection path to discriminate between different wavelengths, in order to improve signal to noise and in order to be able to distinguish signals from different types of particles (i.e. particle multiplexing). Particles with different optical properties can be used and can be discriminated in the optical path.
Based on these general ideas, the present invention provides according to an embodiment a method for detecting clusters of superparamagnetic particles coated with a bioreactive agent. A suspension of the superparamagnetic particles in a fluid to be analyzed is provided. The particles are allowed to form clusters due to an analyte present within the fluid and a magnetic field rotating at least one given frequency is applied to the solution. Light is directed to the fluid and the amplitude of the intensity of scattered light at higher harmonics of the frequency of the magnetic field is extracted. Since the modulated signal is mostly at twice the frequency of the rotating magnetic field, preferably the amplitude of the intensity of scattered light at twice the frequency of the magnetic field is extracted. Preferably the intensity of scattered light is measured in a dark field configuration, i.e. in directions away from the direction of the light beam to the fluid. Since all the scattered light contribute to the signal, it is desirable to collect it all to get the maximum signal. In practice, optical means such as a lens is preferably used to collect light scattered over several angles onto a detector. The preferred frequency and strength of the rotating magnetic field depend on the size and magnetic properties of the particles. The frequency of the rotating magnetic field should preferably be at least about 1 Hz. As an upper limit, a frequency value 30 times bigger than the critical frequency is preferred. Regarding the field strength, the lower limit should be the minimum strength to have rotation of two-particle clusters. The upper limit should be the maximum field strength that induces negligible magnetic chaining during the measurement time. Typically, values of about 1 to 50 Hz for the frequency and about 1 to 10 mT for the strength may be used.
Each cluster of a given length is able to rotate synchronously with the external field up to the critical frequency, beyond which the net rotation rate decreases. The longer the cluster, the lower the value of the critical frequency. As a consequence the amount of modulation at double the frequency of the external field is constant below the critical frequency and sharply drops at higher frequencies. The frequency where this critical transition occurs, that is, the value of the critical frequency may be determined by measuring the amplitude of the intensity of scattered light at twice the frequency of the magnetic field depending on the frequency of the magnetic field.
Moreover, using this method, the size of the clusters my be distinguished due to the value of the critical frequency that varies for different cluster sizes. For example, when the ensemble of particles present in the solution includes clusters of different sizes, several critical transitions will be present in the frequency-dependent optical signal. Furthermore, the magnetic properties of the particles can be accurately characterized by measuring the frequency-dependent optical signal of an ensemble of particles in which two-particle clusters are present. Specifically, the average value of the susceptibility for the ensemble of particles can be obtained as well as the spread of the susceptibility.
In another embodiment, the present invention provides an apparatus for detecting clusters of superparamagnetic particles, comprising a light source for directing light to a cuvette including a suspension of superparamagnetic particles in a fluid to be analyzed, means for applying a rotating magnetic field and a detector for detecting light scattered in the fluid.
These and other aspects of the invention will be apparent from and elucidated with reference to the embodiments described hereafter.
A light source, preferably a laser 30, emits a collimated laser beam which is focused in the centre of the glass cuvette 10 wherein the biological sample is placed. The light which is scattered by the particles in the fluid is collected with a lens placed at approximately 30 degrees from the main optical axis, achieving a dark field configuration. A lens 41 is used to collect light scattered over several angles around 30° onto the detector 40. When the clusters 20 are actuated with a magnetic field, because of their elongated shape, they expose a time-dependent cross section to the incoming laser beam. As a consequence, the amount of scattered light detected by photo-detector 40 depends on the orientation of the clusters with respect to the incoming optical beam.
The main advantages of the detection method are that single particles contribute negligibly to the signal because of their spherical shape. Two-particle clusters rotate synchronously with the field for frequencies below the critical frequency. Above the critical frequency, the clusters show wiggling and reduced net rotation frequencies as described in further detail in WO 2010/026551 A1.
A recent reference for scattering-based detection is the publication by Sandhu et al. in NanoLetters, 2010, 10, p. 446-551. Sandhu et al. actuate and detect particle chains with very long lengths. In contrast, the present invention focuses on the sensitive detection of short clusters, in particular two-particle clusters, which is important in assays with very low target concentrations.
In a quantitative description of the rotational dynamics of (linear) clusters, an specifically of two-particle clusters, during a full rotation, the clusters expose the same area to the incoming light twice per period, as illustrated in
Each cluster of a given length is able to rotate synchronously with the external field up to the critical frequency, beyond which the net rotation rate decreases. The longer the cluster, the lower the value of the critical frequency. As a consequence the amount of modulation at double the frequency of the external field is constant below the critical frequency and sharply drops at higher frequencies.
The magnetic properties of the particles can be accurately characterized by measuring the frequency-dependent optical signal of an ensemble of particles in which two-particle clusters are present. It is not needed to have visual images of individual clusters, as described in Ranzoni et al, Lab Chip, 2010, 10, pages 179-188. With a fast measurement an ensemble of clusters can be tested. If there is some variability in the value of the susceptibility of the particles, the critical frequency for different two-particle clusters will occur at slightly different values of the external frequency. As a consequence instead of a sharp decrease in the amount of modulation, a much smoother transition is expected (see
Furthermore, one can distinguish the size of the clusters thanks to the value of the critical frequency. Two-particle clusters have the highest critical frequency; longer chains have a lower the value of the critical frequency due to higher viscous drag of the cluster. When several species of clusters are present in the sample, several critical transitions will be present in the frequency-dependence of the optical signal.
Different biological assay formats can be applied. For example, in a per se known sandwich cluster assay, an analyte is captured (‘sandwiched’) between particles. Also, other assay formats can be used. Here we give an example of a competitive assay or an inhibition assay, a format that is suited for the detection of small molecules. In one possible embodiment, two species of particles are used: a first kind that is coated with analyte analogue, and a second kind that is coated with anti-analyte antibodies. When the particles are exposed to a sample that does not contain analyte, then the antibodies will be free for binding to the analyte-analogue, clustering is not inhibited, a lot of clustered particles are formed, and the signal results to a maximum. The more analyte is present in the sample, the more the antibodies are blocked and cannot form a chemical bond, resulting in a low number of clusters and a lot of single particles. This gives the typical dose-response behavior for a competition assay (high signal for low analyte concentration, and low signal for high analyte concentration).
A biological assay based on rotationally actuated magnetic particle clusters is illustrated in
Superparamagnetic particles coated with a biomolecule which specifically recognizes the analyte are incubated (for at least one minute) with the analyte (see
While in solution, the particles collide with each other with a rather slow kinetics: the formation of two-particle clusters would require many hours. A rotating magnetic field is applied so that particles form long chains in a time scale of a few seconds and they remain in close proximity (see
When the field is removed, particles can redisperse due to thermal motion, unless kept in close proximity by the biochemical bond. Particles can also stay coupled due to non-specific bonds. In this specific example a rotating magnetic field is applied to form long chains of particles which are kept close together by the dipole-dipole interaction. Thanks to some degree of freedom in vibration and rotation, effective binding between particles is possible and two-particle clusters are formed. The cluster are given some time to diffuse, then the detection through rotational actuation takes place.
The sample has been exposed to ultrasound waves at 40 kHz to reduce the amount of non-specific clustering. The measurement of the optical signal has been done with a field of 4.5 mT; the optical signal has been sampled at 1 kHz for 3 seconds for each measurement point. With respect to the measurement without analyte, the critical frequency is shifted to lower frequency. This is due to the fact that a not negligible number of chains of three particles have been formed and they are characterized by a lower critical frequency. When the critical frequency for the doublets is crossed, the slope of the curve doubles.
Another experiment (
An experimental arrangement is sketched in
The sensitive and selective detection of two-particle nanoactuators embedded in an ensemble of single nanoparticles is based on two distinguishing features, namely magnetic anisotropy and optical anisotropy. The magnetic shape anisotropy of a two-particle nanoactuator enables frequency-controlled rotation, while the optical anisotropy of a nanoactuator generates a modulation of optically scattered light. Single particles contribute negligibly to the optical modulation because they lack the characteristic magnetic and optical anisotropies of the two-particle nanoactuators.
In the experimental setup, the collimated laser beam is focused with a low numerical aperture lens (NA=0.025) into the center of a glass cuvette of square cross section. The low numerical aperture lens guarantees a depth of focus of 1 mm. The depth of focus is comparable to the optical path inside the cuvette (1 mm). The beam waist is calculated to be approximately 32 μm in diameter. Consequently the optically probed volume is approximately 1 nl. Nanoparticles of 300 nm (Streptavidin coated Bio-AdemBeads, AdemTech) were measured with a blue laser (405 nm, Nichia NDV4212T, operating at 120 mW). Nanoparticles of 500 nm (Streptavidin coated Masterbeads, AdemTech) were measured with a red laser (658 nm, Sanyo DL-6147-240, operating at 40 mW).
The focus of the laser beam and the glass cuvette are placed in the center of a quadrupole electromagnet, which generates a rotating magnetic field in a vertical plane. The electromagnets have been calibrated with a Hall probe and generate a maximum field of 70 mT. A measurement of the frequency response of the magnets shows that the self-inductance of the coils becomes important only at frequencies above several hundreds of Hz. The scattered light was measured at an angle of roughly 30 degrees from the main optical axis, since it was found that this configuration maximizes the intensity. The detection path consists of a lens focusing the scattered light onto a photodetector (New Focus, model 2031, gain 2·106). Voltage signals measured by the photodetector are sampled at 1 kHz during 3 s and stored in a file using digital data acquisition (National Instrument NI-DAQ 6259). The data are processed by an FFT algorithm in MATLAB to compute the signal amplitudes. The FWHM value of the 2f peaks is about 5 mHz.
The optical response of the system was investigated with a calibration sample. Nanoparticles from the stock solution were diluted to a concentration of 0.1 mg/ml in PBS buffer (10 mM, pH 7.4) containing 5% w/v BSA (both purchased from Sigma-Aldrich). The sample was sonicated for 3 s with a sonic needle, operating at 40 KHz and 50 W. The solution viscosity, measured with a MCR300 rheometer Antoon Paar Physica, is 2.32±0.09 Pa·s. The samples have been examined under a microscope and the ratio between the number of two-particle nanoactuators and the number of single particles was determined to be approximately 5%; no larger clusters could be identified in significant proportion (less than 0.1% of the total population).
When performing an assay, the nanoparticle stock solution is diluted to 2 mg/ml in buffer and the solution is exposed for 3 s to ultrasound at 40 kHz and 50 W to minimize the number of clustered nanoparticles in the initial sample. A 3 μl volume of streptavidin-coated nanoparticles is added to 3 μl of biotinylated BSA (bBSA, Sigma Aldrich, cod. A8549), for end-concentrations between 60 fM and 10 nM. Nanoparticles and bBSA are incubated for 10 s. Thereafter, during the magnetic chaining phase, the sample is exposed to a 5.3 mT field rotating at 1 Hz for 2 minutes. Prior to the detection step, the solution is diluted with de-ionized water to 85 μg/ml, because that gives a blank value approximately ten times larger than the instrumentation noise. The optical response to a frequency sweep is measured and each experimental point is the result of a 3 s averaging time with a field strength of 3.5 mT. The samples have been probed with frequencies between 1 Hz and 25 Hz. For experiments in human plasma, the nanoparticles in the 2 mg/ml solution are attracted to the bottom of a vial with a permanent magnet, the supernatant is removed and replaced by an equal volume of spiked human plasma. Plasma is taken from a pure human heparin plasma pool from 20 healthy donors (purchased from Innovative). All samples were prepared by spiking whole plasma with 30 μM bBSA in PBS buffer, and by subsequent dilutions in whole plasma to arrive at the required target concentrations for the dose-response curve. Consequently, the amount of PBS buffer in the final samples is negligible. The actuation protocols for chaining and detection are the same as for the assay in buffer. Prior to detection, the plasma sample is diluted to a final nanoparticle concentration of 55 μg/ml, because that gives a blank value approximately ten times larger than the instrumentation noise. All points in the dose-response curves were measured in triplicate.
a shows that the collimated laser beam is focused at the center of four electromagnets where a glass cuvette is placed. The light scattered at an angle of approximately 30 degrees with respect to the incoming laser beam is focused onto a photodetector.
In order to calibrate the optomagnetic detection system, experiments were performed for different solution concentrations, see
The system allows a detailed characterization of the magnetic properties of the nanoactuators. In “Ranzoni, A.; Janssen, X. J. A.; Ovsyanko, M.; Ijzendoorn, L. J.; Prins, M. W. J. Lab on a Chip 10, (2), 179-188”, the equation of motion for a single two-particle actuator in a rotating magnetic field has been developed. In the low-frequency regime, the nanoactuators rotate synchronously with the applied field. At a critical frequency, the phase difference between the applied field and the magnetic moment is maximum, so a maximum torque is applied and a maximum rotation frequency is realized. Beyond the critical frequency, the rotation shows a wiggling behavior in which forward and backward motions alternatingly appear. The backward rotations reduce the net forward angular velocity, an effect that becomes stronger for increasing frequency of the external field. When magnetic shape anisotropy dominantly generates the magnetic torque, the equation describing the motion of a two-particle nanoactuator in a uniform magnetic field {right arrow over (H)} rotating in the xz plane at frequency ωf, is given by:
where ωcrit=μ0χ2H2/168η represents the value of the critical frequency, φi is the angle between the direction of the induced magnetic moment and the z-axis, φna is the angle between the axis of cylindrical symmetry of the nanoactuator and the z-axis, μ0 is the magnetic permeability of vacuum, χ is the dimensionless volume susceptibility of the magnetic nanoparticle material, and η is the viscosity of the fluid medium. The equations are derived by balancing the magnetic and viscous torques. The equations are independent of the size of the nanoparticles because the magnetic and viscous torques both scale with the volume of the particles; this means that our actuation method is in principle applicable to a wide range of particle sizes.
b shows the frequency-dependence of rotation of the nanoactuators for different magnitudes of the applied magnetic field, measured on a mixture of two-particle nanoactuators and single particles. In the low-frequency regime, the signal is independent of frequency since the nanoactuators rotate synchronously with the applied field. At intermediate frequencies a gradual decrease of signal is observed. The signal decrease can be attributed to a progressive diminishment of the number of two-particle nanoactuators that is able to rotate synchronously with the magnetic field. A spread in size and magnetic content in the nanoparticles results in a distribution of critical frequencies; the nanoactuators with the lowest volume susceptibility are the first to deviate from the synchronous rotation and at higher frequencies more and more nanoactuators enter the regime of wiggling rotation. In the wiggling regime, the amplitude of the 2f modulation decreases and FFT signals appear at lower frequencies. The critical frequency was determined from the point where the intermediate frequency curve extrapolates to unity, as indicated in
The data can also be expressed as a function of a dimensionless parameter, the Mason number, which represents the ratio between viscous and magnetic torque:
At the critical frequency (see equation 1) the Mason number equals unity. In
In the above experiments it was demonstrated that optical scattering is an accurate tool to characterize the rotational dynamics of an ensemble of two-particle nanoactuators and that the amplitude of the 2f signal is an accurate measure for the amount of nanoactuators in the sample. Assays have been investigated as in
As shown in
For every measurement point a frequency scan was performed as in
To further investigate the concentration dependence, frequency response curves were measured for three concentrations of bBSA.
The measurements were performed in a field of 3.5 mT with an averaging time of 3 seconds. The critical frequency shifts to lower values for increasing bBSA concentrations due to the presence of nanoactuators of increasing size. The signal at low frequencies increases with the concentration of antigen because of the larger size and number of nanoactuators. The dotted lines are obtained by fitting the experimental points and are used to estimate the critical frequencies. The data at a concentration of 3.15 pM show the co-presence of nanoactuators made of two and three nanoparticles, respectively characterized by a critical frequency of approximately ωcrit/2π=7 Hz and 16 Hz. At the latter critical frequency, the slope of the frequency dependent signal doubles.
The low-frequency concentration-dependent signals lead to a dose-response curve as in
Analytical assays are particularly challenging in complex biological matrices such as blood plasma, due to the large quantities of potentially interfering molecules 19.
With the present invention, a simple and cost-effective setup to measure scattering of light from rotating particle clusters is provided. With the present invention. ensembles of nanometer-sized particles can be magnetically characterized and it is possible to discriminate between different cluster sizes. The apparatus and method is further suited for fast and sensitive agglutination assays, e.g. the detection of picomolar target concentrations.
While the invention has been illustrated and described in detail in the drawings and foregoing description, such illustration and description are to be considered illustrative or exemplary and non-restrictive; the invention is thus not limited to the disclosed embodiments. Variations to the disclosed embodiments can be understood and effected by those skilled in the art and practicing the claimed invention, from a study of the drawings, the disclosure, and the appended claims. In the claims, the word “comprising” does not exclude other elements or steps, and the indefinite article “a” or “an” does not exclude a plurality. A single processor or other unit may fulfill the functions of several items recited in the claims. The mere fact that certain measures are recited in mutually different dependent claims does not indicate that a combination of these measures can not be used to advantage. Any reference signs in the claims should not be considered as limiting the scope.
Number | Date | Country | Kind |
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10168221.9 | Jul 2010 | EP | regional |
11158688 | Mar 2011 | EP | regional |
PCT/IB2011/052265 | May 2011 | IB | international |