The invention relates to a device which enables crystallisation (e.g. of biological macromolecules) by means of counter-diffusion. The inventive device consists of a one-dimensional space, for example a capillary tube, comprising three differently-shaped parts. The invention also relates to a block which comprises several of the aforementioned devices and which can be used to perform crystallisation experiments simultaneously under different conditions. The invention further related to a method of growing crystals by means of counter-diffusion in one-dimensional devices either under terrestrial gravity conditions or under reduced gravity conditions, preferably with the use of the block comprising several of said devices in the latter case.
The crystallisation of biological macromolecules under reduced gravity or “microgravity” conditions in space is carried out by different methods which may be divided into two major groups. The first of these groups comprises the techniques in which the crystallisation takes place inside a small, quasi-spherical volume and may therefore be referred to as sphere-shaped. These techniques include the conventional vapor phase techniques, which are the techniques most used up until the year 2000 in space experiments (U.S. Pat. No. 5,641,681). As of that point in time, the technique of counter-diffusion under far-from-equilibrium conditions which are carried out in longitudinal reactors and therefore pertain to the group we refer to as long techniques (see Patents ES 2164032 and ES 2172363), have progressively taken the place of the former. In these longitudinal techniques, it is aimed to achieve a continuous change in space and time of the supersaturation conditions along the axis of the reactor where the crystals are grown. In the counter-diffusion technique, the solutions which are going to react are placed facing one another in direct contact with or separated from one another by means of a membrane or by a chamber in between serving as a physical buffer, in other words, as a chamber which slows the kinetics of the transport process. This chamber may be filled with a chemical buffer or with any liquid, e.g. water. By definition, counter-diffusion techniques require that convection inside the crystallisation area be prevented. There are two ways of reducing this convection: by performing the experiments under microgravity conditions in space or rather by performing them in gelled media. These two media, microgravity in space and gels both entail the reduction of the convection caused by flotation, the reduction of the concentration of impurities on the crystalline surface and the elimination of the sedimentation of crystals and the secondary nucleation of protein aggregates. In addition thereto, microgravity eliminates the possible chemical interaction of the gel with the reagents including proteins. The counter-diffusion technique has been used in space in reactors of several microliters volume which need to be turned on by the ship's crew, this technique having been proven by means of video-interferometry to work appropriately under reduced gravity conditions (J. M. García-Ruiz, F. Otalora, M. L. Novella, J. A. Gavira, C. Sauter and O. Vidal. A supersaturation wave in protein crystallization. Journal of Crystal Growth 232, 2001, 149-155). For the fast, simple growth of macromolecular crystals in land-based laboratories, the gel acupuncture method was developed, which is based on the properties of gels which are used to fix capillaries containing the ungelled protein solution, as well as due to its being a medium for the transfer of matter from the precipitating agent. The precipitating agent and the protein move in counter-diffusion through the porous gel which fixes the capillaries. The protein solution moves at a lower speed due to the fact that the constant diffusion of the large macromolecules is one or two orders of magnitude lower than the small molecules are which used as a precipitating agent. When they come into contact, the protein concentration progressively increases up to the point of reaching the degree of supersaturation which gives rise to the formation of crystals (J. M. García-Ruiz et al., “Teaching protein crystallization by the gel acupuncture method”; Journal of Chem Education 75, 1998, 442-446; F. Otálora and J. M. García-Ruiz, “Computer model of the diffusion/reaction interplay in the Gel Acupuncture Method”, Journal of Crystal Growth 169, 1996, 361-367; J. M. García-Ruiz, Counterdiffusion methods for protein crystallisation. Methods in Enzimology 368 (2003) 130-154). The counter-diffusion method developed by J. M. García-Ruiz et al., is based on commencing the crystallisation experiments under far-from-equilibrium conditions seeking multiple nucleation events under conditions progressively nearing equilibrium. By using this method, the system undergoes precipitation phenomenon which take place at different supersaturation values. The first nucleation events take place under very far-from-equilibrium conditions, giving rise to amorphous precipitation. The following events will take place under conditions nearer to equilibrium with polycrystalline precipitation. Thus, as the process progresses, the system slowly nears equilibrium, giving rise to fewer crystals, but of higher quality. Each one of these precipitations takes place at different locations in the capillary. These experiments has been conducted both by the gel acupuncture method as well as by the triple-layer method (H. K. Henisch, Crystal growth in gels and Liesegang rings, Cambridge University Press, 1988) in X-ray capillaries (Joseph D. Ng, José A. Gavira and Juan M. García-Ruiz, Protein crystallization by capillary counterdiffusion for applied crystallographic structure determination, Journal of Structural Biology 142, 2003, 218-231). To facilitate the experimenting, a device known as the Granada Crystallisation Box (GCB) was developed, affording the possibility of easily implementing the gel acupuncture method (J. M. García-Ruiz, L. A. González, J. A. Gavira and F. Otálora. Granada Crystallisation Box: a new device for protein crystallisation by counter-diffusion techniques. Acta Crystallographica D58, 2002, 1638-1642). This device (GCB) can function properly in space without needing to be handled by the ship's crew. For this purpose, some special containers, known as the “Granada Crystallisation Facility” were built, fully meeting the safety requirements for manned orbital vehicle experimentation, which are capable of holding up to 23 GCB's measuring one liter in volume and one kilogram in weight.
The prime object of this invention is a device for counter-diffusion crystal growth consisting of a one-dimensional space, preferably a capillary tube, comprising three differently-shaped parts.
The capillary tube may be made either of glass or of a polymer material which is transparent or non-transparent to X-rays. Optionally, the capillary vessel is equipped with a cover providing for the press-fit hermetic seal of the vessel by pressing on the outer edge of said vessel.
The inventive device can be used individually or integrated into a block comprising several of the aforementioned devices and which can be used to perform crystallisation experiments simultaneously under different conditions.
The aforementioned block for simultaneously carrying out counter-diffusion crystal growth processes in one-dimensional—preferably capillary—spaces, comprises of the following elements:
A first configuration of the internal device consists of a solid block consisting of regularly-distributed holes which are of the necessary shape for inserting the one-dimensional devices and which is closed with a cover equipped with a watertight seal.
A second configuration of the internal device is comprised of a set of 2 to 10 modules, which consist of regularly-distributed holes of the shape necessary for inserting the one-dimensional devices.
A third configuration of the internal device is comprised of a set of 2 to 10 modules, which consist of regularly-distributed spaces of the shape necessary for inserting up to 20, preferably up to 11 boxes of the type known as the Granada Crystallisation Box (GCB), each of which contains 1 to 50 one-dimensional—preferably capillary—devices.
A fourth configuration of the internal device would be comprised of a set of 2 to 10 modules, one to nine of which consist of regularly-distributed holes of the shape necessary for inserting the one-dimensional devices and between 1 and 9 comprise regularly-distributed holes of the necessary shape for inserting up to 20, preferably up to 11 GCB-type boxes, each containing 1 to 50 one-dimensional—preferably capillary—devices.
The outer box and the internal device are made of any material which does not interact with the chemical agents which are used in the crystal growth processes, preferably in polymer, ceramic, metal or glass material. Optionally, a free volume is left between the outer box and the internal device which is filled with bags of phase-change material which is used for keeping the temperature stable inside the box. Likewise, as an option, a module containing a Peltier thermoelectric element and electronic systems for maintaining the temperature can be attached to the outer box.
This invention further relates to a method of growing crystals by means of counter-diffusion in the aforementioned one-dimensional—preferably capillary—devices, which consists of the following stages:
The compound to be crystallised is preferably a biological macromolecule.
The solution which contains the compound to be crystallized is comprised of an organic or inorganic solvent, preferably water, water with a pH buffer or water with surface-active product.
The inert gel is a chemically-inert agent such as agarose and derivative materials, polyacrylamide or silica gel, or any porous medium which will serve to prevent convection.
The precipitating agent is generally any compound which reduces the solubility of the compound to be crystallized, such as an inorganic salt, for example sodium chloride or ammonium sulfate, or rather a polymer or alcohol e.g. polyethylene glycol.
The process can be performed under terrestrial gravity conditions or rather under reduced gravity conditions. In the latter of these two cases, the method is performed preferably in the block described hereinabove which groups together several of the one-dimensional devices.
The invention is characterized in that it comprises three differently-shaped parts.
The first of these parts is a capillary cylinder per se measuring longer than 10 millimeters in length and having a diameter ranging from 50 microns to 2 millimeters. The second, which is optional, is the capillary neck, which is U-shaped and measures 0.1 to 2 millimeters in length. Due to its shape, the diameter of the neck varies continuously or discontinuously between the diameter of the capillary cylinder and the diameter of the vessel. The third is the capillary vessel, which can be 10-30 millimeters in length and of a width up to 30 times the diameter of the capillary cylinder. The inventive capillary is characterized in that it is shaped such that the vessel will have a volume greater than five times the volume of the capillary cylinder. This shape is fundamental for the counter-diffusion crystallization because it ensures that—once equilibrium has been reached—the concentration of precipitating agent inside the capillary cylinder will be similar to the initial concentration inside the vessel. Thus, it can be ensured that the supersaturation wave will run the full length of the capillary. The capillaries currently available have a vessel volume-capillary cylinder volume ratio which is too small for the counter-diffusion process to take place throughout the full length of the capillary.
The capillaries of this invention, whether made of glass or plastic (transparent or non-transparent to X-rays) may be of a capillary diameter ranging from 50 microns to 2 millimeters in diameter.
The method for growing crystals by means of counter-diffusion in the devices of this invention consists of the following stages:
As of this point in time, the diffusive mass transport of the precipitating agent toward the solution containing the compound to be crystallized commences, the crystallization taking place inside the capillaries such that as the process progresses, higher-quality crystals are produced as a result of nearing equilibrium conditions.
The invention also relates to a block (see
The body of the box contains an internal device inside which may be of different configurations. In an initial configuration (see
The internal box (see
Thus,
In addition to providing the advantages of the Granada Crystallisation Facility to which reference is made in the State of the Art section, this block also provides the following advantages with regard thereto:
Number | Date | Country | Kind |
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P200401200 | May 2004 | ES | national |
Filing Document | Filing Date | Country | Kind | 371c Date |
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PCT/ES2005/070068 | 5/18/2005 | WO | 00 | 11/29/2007 |