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The present application is in the area of botanical and agricultural sciences and is more specifically directed to a device and method for measuring trichomes on the inflorescences of Cannabis plants.
Cannabis is a genus of dioecious flowering plants in the Cannabaceae family. Cannabis is widely grown for both fiber and medicinal purposes. As a dioecious plant there are both “male” (pollen bearing) and “female” (seed bearing) plants. Mile both male and female plants are used for fiber production, only the female plants have significant medicinal properties because they contain high concentrations of cannabinoids and other active plant products. The inflorescence of the female plant bears insignificant, wind pollinated flowers within a dense terminal raceme (often secondarily or tertiarily branched) bearing multiple floral bracts. The inflorescence often has a rounded surface formed by the primary, secondary and higher order racemes; cannabis cultivators often refer to this structure as “flower” or “buds.” The floral bracts are densely covered with glandular trichomes-mushroom-shaped epidermal structures consisting of several stalk cells with a large spherical cap. The cap consists of large secretory cells which are thought to be the major sites of cannabinoid as well as terpene biosynthesis. Cavities within the trichome cap act as reservoirs for the synthesized cannabinoids and terpenes. Trichomes, thus, make significant contributions to the psychoactive properties, appearance, smell, and taste of cannabis. It is therefore important for cannabis growers and scientific researchers to understand the relationship between trichome traits and the desirable properties of the plant. However, the current state-of-the-art method of measuring trichome traits is to manually count them through a microscope. This task is rarely performed due to its tediousness and potential for human error. Scientific knowledge of the relationship of trichome size and density on the properties of the cannabis plant is therefore inadequate.
Glandular trichomes are visible to the naked eye; although they are too small to count without magnification. However, lenses with high magnification are sufficient to enable counting of the trichomes. Using digital image capture technology, the problem of counting trichomes can be vastly simplified by applying a machine learning algorithm. An example of using a machine learning algorithm to automatically count plant trichomes can be seen in the publication Mimezami et al., “Automated trichome counting in soybean using advanced image-processing techniques,” Applications in Plant Sciences, 2020 8(7): e 11375. In this report, the authors took leaf cuttings from soybean plants and chemically cleared them before mounting them onto a microscope slide for imaging. The imaged trichomes were then automatically counted using image processing software. This method would not be practical for trichome counting on cannabis inflorescences for a number of reasons, including: 1) the destructive nature of the method requires sacrificing valuable product thereby limiting the scope of measurements; 2) the required use of advanced microscopy methods requires special expertise and training; and 3) cannabis inflorescences cannot easily be mounted to a slide due to their dense three dimensional structure—an accurate trichome count requires observing the entire surface of the inflorescence, not just a cleared bract.
Due to the difficulty of obtaining accurate trichome counts, cannabis cultivators do not typically measure the total trichome count or trichome density of the cannabis inflorescences they grow. Since the trichomes are the primary site of cannabinoid biosynthesis, the quantity of trichomes may be directly correlated with increased potency of the cannabis inflorescence, and the correlation will be even stronger when varying agronomic conditions to promote increased trichome production within a single cultivar (“strain” in cannabis parlance). For example, when growing a particular cultivar of cannabis, if a fertilizer combination was found to increase trichome count, this would also increase the total Δ9-tetrahydrocannabinol (Δ9-THC) content of the inflorescence. In general, cultivars with more trichomes will tend to be more potent than cultivars with fewer trichomes. These data are thus extremely important for cannabis breeding and optimization of agronomic conditions yet are currently unavailable to cannabis cultivators due to the impracticality of manually counting trichomes.
Although users trained in microscopy could take the time to manually count trichomes, such trichome count data will only be meaningful when a large number of inflorescences are measured. This is due to the inherent variation in the traits of cannabis plants, even when the plants are grown under essentially identical conditions. For example, if one plant gets slightly less light or slightly less water than a neighboring plant, this can lead to a decreased expression of trichomes on the flower bracts. To address this inherent variation, many inflorescences of the same cultivar would have to be measured, an unfeasible task given the time required to manually observe a cannabis inflorescence under a microscope and manually count each trichome.
Therefore, there is a need for an automatic trichome counting device that allows non-destructive determination of the total trichome count and trichome density of cannabis inflorescences. There is also a need that such a device allows rapid counting, so that data can be collected from a large quantity of inflorescence samples to obtain an accurate representation of the phenotype of the cannabis cultivar. Finally, there is a need that this device be simple enough to use that a cultivator does not need any special education or training to obtain meaningful data.
The present invention comprises a device (a “trichome scanner”), consisting, in a preferred embodiment, of a digital camera with a microscope objective lens, a disc or platform where plant material can be mounted and automatically rotated, and at least one additional camera for determining the plant material's shape and size. The device allows images of intact cannabis trichomes to be taken, without destruction or damage to the plant material. The captured images are then automatically parsed by image analysis software that determines the total trichome count and estimates the trichome density of the sample; the trichome count and density values can be displayed (for example on a liquid crystal display-LCD-screen) for the user to read or can be relayed electronically to a quality control system. In an alternative embodiment, the flower sample is placed onto a fixed platform and the camera is mounted on a wheel that allows the camera to rotate around the flower while taking images.
Besides providing an automatic trichome tally for judging the quality of a Cannabis inflorescence, the invention also provides a measurement of “trichome availability.” Some uses of Cannabis rely on trichomes isolated from the inflorescence. The trichomes are harvested using mechanical techniques to detach the trichomes from the bracts of the inflorescence. It is understood in the Cannabis art that some inflorescences, while having an extremely high trichome density, provide a relatively poor yield of detached trichomes. This is largely a result of hindrance caused by the spacing of the floral bracts. In its simplest form a Cannabis inflorescence can be pictured as a central stem with more or less closely spaced nodes. At each node the axillary bud develops into a secondary branch containing one or more floral bracts which subtend the pistillate “female” flowers. Where the intermodal distance is relatively large, the majority of trichomes can be readily detached. Where the intermodal distances are relatively small, the total inflorescence is “tight” and the overlapping floral can inhibit harvest of trichomes. The inventive trichome scanner measures the internodal distances in the inflorescence and provides an index that predicts the ability to harvest trichomes from the inflorescence.
The following description is provided to enable any person skilled in the art to make and use the invention and sets forth the best modes contemplated by the inventors of carrying out their invention. Various modifications, however, will remain readily apparent to those skilled in the art; the general principles of the present invention have been defined herein specifically to provide an automated trichome counter particularly well-suited for measurement of glandular trichomes on Cannabis inflorescences.
The terminology used herein is for the purpose of describing specific embodiments only and is not intended to be limiting of the invention. As used herein, the term “and/or” includes any and all combinations of one or more of the associated listed items. As used herein, the singular forms “a,” “an,” and “the” are intended to include the plural forms as well as the singular forms, unless the context dearly indicates otherwise. It will be further understood that the terms “comprises” and/or “comprising”, when used in this specification, specify the presence of stated features, steps, operations, elements, and/or components, but do not preclude the presence or addition of one or more other features, steps, operations, elements, components, and/or groups thereof.
Unless otherwise defined, all terms (including technical and scientific terms) used herein have the meaning as commonly understood by one having ordinary skill in the art to which this invention pertains. It will be further understood that terms, such as those defined in commonly used dictionaries, should be interpreted as having a meaning that is consistent with their meaning in the context of the relevant art and the present disclosure and shall not be interpreted in an idealized or overly formal sense unless expressly so defined herein.
In describing the invention, it will be understood that a number of techniques and steps are disclosed. Each of these has individual benefit and each can also be used in conjunction with one or more, or in some cases all, of the other disclosed techniques. Accordingly, for the sake of clarity, this description will refrain from repeating every possible combination of the individual steps in an unnecessary fashion. Nevertheless, the specification and claims should be read with the understanding that such combinations are entirely within the scope of the invention and the claims.
A trichome scanner device that allows automatic counting of trichomes on cannabis inflorescences is discussed herein. In the following description, for purposes of explanation, numerous specific details are set forth to provide a thorough understanding of the present invention. It will be evident, however, to one skilled in the art that the present invention may be practiced without these specific details.
The present disclosure is to be considered as an exemplification of the invention and is not intended to limit the invention to the specific embodiments illustrated by the drawings or description. Distances, angles, and other measurements are provided in a range that is practical for the device operation and are not intended to limit the invention to any specific embodiments or dimensions. Unless otherwise noted, all components of the device could be fabricated of resin, plastic, metal, wood, or any other inert material that will not interact with the resinous surface of a cannabis inflorescence.
The present invention will now be described by referencing the appended drawings representing preferred embodiments.
As shown in
The second camera 5 is attached to a horizontal mount 17, which is attached to a column 18. The mount 17 is a rectangular block about 10-15 mm in height, about 15-20 mm long, and about 50-80 mm deep; in a preferred embodiment, the mount 17 is about 15 mm high, 20 mm long, and 80 mm deep. The column 18 is also a rectangular member about 10-15 mm deep, about 15-20 mm long, and about 100-150 mm in height; in a preferred embodiment, the column 18 is about 15 mm high, about 20 mm long, and about 150 mm high.
A microscope objective lens 6 is positioned opposite the second camera 5, aimed diagonally at the plant sample mounted on the rotating disc 1. The working distance for the microscope lens should be in the range of about 80-100 mm, with a lens diameter of 25-40 mm. At the top of the microscope objective lens 6 a high-quality third camera 7 is installed, with a minimum of 5 MP resolution and ¼″ to ⅔″ sensor size. At the bottom of the microscope objective lens 6, a ring light 8 is mounted, with an interior diameter in the range of about 25-40 mm to match the lens diameter, with an exterior circle diameter about 15-20 mm larger than the interior diameter; in a preferred embodiment the microscope objective lens outer diameter and the ring light interior diameter are both about 40 mm, and the ring light exterior diameter is about 60 mm.
The high-quality camera 7 is mounted atop a column 20 of height ranging between about 100-150 mm; in a preferred embodiment the column 20 has a height of about 150 mm. In a preferred embodiment, a camera mount 19 has square dimensions of about 22 mm long by about 35 mm high by about 24 mm deep (see
Four bridging members 21, connect the bottom panel 24 and the top panel 23, via screws. Each member 21 is rectangular, with dimensions ranging from about 70-100 mm in depth, about 50-70 mm in height, and about 10-15 mm length (thickness); in a preferred embodiment, this component is about 100 mm deep, about 70 mm tall, and about 15 mm thick. Two of these bridging members 21 are installed on either side of a stepper motor 10, and at opposite ends of the top panel 23 and the bottom panel24; each member 21 includes an octagonal opening in the center (80 mm wide in a preferred embodiment) to allow adequate airflow for the motor 10 and Single-Board Computer (SBC) 9. The two interior components 21 are connected by two braces 22, to join the two parts of the base panel 24, together.
Cables (not shown) connect the cameras 4, 5, 7, the ring light 8, and the stepper motor 10 to the SBC 9. In a preferred embodiment the SBC 9 runs the Raspberry Pi OS operating system (OS), or some other similarly configured OS. Short-range and long-range wireless technologies (e.g., Bluetooth and WiFi, respectively) can also be employed. The SBC or similar computing device can be Internet-connected and may be located outside of the enclosure containing the other components of the system.
The vertical and horizontal cameras 4 and 5 (as well as high-quality camera 7) image the inflorescence using the ring light 8 for illumination. The calibration areas 2 and 3 are visible in the images and the calibration markings are used for automatic calibration of the cameras by removing areas of the image outside of the calibration lines. This allows the system to continue to function properly even if the cameras become slightly misaligned due, for example, to handling and transportation of the machine.
As shown in
As shown in
The device then images the inflorescence with the camera 7 connected to the SBC's built-in camera port (not pictured). The horizontal and vertical alignment cameras 4 and 5 are connected to the SBC's built-in USB ports (not pictured). It will be appreciated that various connections can also be made via wireless technologies using short-range networking such as Bluetooth or local networks such as RS 232 or wide area networks such as the Internet. There could also be multiple SBCs to control different components, such as a separate SBC solely for image capturing or motor control. After the image has been captured, the SBC pulses the stepper motor 10 to rotate the inflorescence before capturing another image. After a series of images have been captured across the entire circumference of the plant sample, the trichome density is calculated by the software and the value is then output on the LCD display 11.
The interior chassis of the device is covered by a protective cover, and in a preferred embodiment this cover is about 270 mm in height, 440 mm in length, and 160 mm in depth at the base. In the preferred embodiment, the top lid 25 of the cover has a curved face that is indented at 240 mm from the base of the cover, with a lip that extends 10 mm beyond the depth of the base (maximum depth of 170 mm front to back). In the preferred embodiment, the entry door 12 is positioned in the center of the lower portion of the top panel, 180 mm from each side, and the center of door 12 is 85 mm from the bottom of the device.
The platform B6 is transparent, which allows the camera B4 to photograph the underside of the flower, which is not possible in the first trichome density scanner embodiment described in
Referring now to the embodiment of
The IFA algorithm also notes any positional offset of the inflorescence within the alignment area caused by the user not having placed the inflorescence perfectly in the center of the rotating platform 1. This information is used later to determine the distance of the inflorescence from the lens, which will change upon rotation if the inflorescence is not placed perfectly in the center of the platform 1. Although there will be distance variations due to the non-spherical shape of the inflorescence, these variations will be much more pronounced if the inflorescence is off center, and the IFA therefore corrects as many of these variations as possible.
A Neural Network Machine Learning Algorithm (NNMLA,
The IFA and the NNMLA both operate on the same digital image. The IFA determines the alignment of the inflorescence on the platform as it is possible it will not be perfectly centered, and the IFA also determines the overall size of the inflorescence; the NNMLA separately (not using the filtered images from the IFA but instead using the original images) counts trichomes. Then the data from the IFA and NNMLA are both used to calculate trichome density, since one needs to estimate the total surface area of the inflorescence sample in order to accurately estimate trichome density.
In step B the model detects objects by drawing rectangular boxes around trichome heads, trichome stalks, and nodes, and returns rectangular coordinates within the image where it has detected these objects, along with a percentage indicating the confidence of its prediction. In step D the size of the enclosing box around a trichome head is used to approximate the size of the head by calculating the box's area. The same method is used to approximate the height of the trichome stalk. Since the utility of this instrument is primarily based on comparisons of different inflorescence samples (e.g. a cultivar that was grown under different conditions or two different cultivars grown under the same condition, etc.) it does not matter that these are approximations, because the relative measurements of the head diameter and stalk length will matter more than the absolute values.
In step C, after discarding predictions with a low confidence value and areas outside the known dimensions of the visible inflorescence, the number of trichomes detected in the image is divided by the area of the sphere visible within the camera's lens to produce a density value in trichomes per square millimeter. In step D, using the same image, the algorithm takes the distances measured for the trichome head diameter and stalk heights for every detected trichome and computes the average trichome head diameter and average stalk height for the trichomes contained within the image.
In step E, inter-nodal distance is calculated from the image from the side camera 5, instead of the image from the microscope camera 7, and is calculated by determining the distance between two adjacent rectangles tagged as nodes by the machine learning algorithm. These values: trichome density, average trichome diameter, average trichome stalk height, and intermodal distance, are then averaged based on the measurements in the image obtained from microscope camera 7 and the image obtained from the side camera 5. The inflorescence is then automatically rotated on the platform and additional images are captured at different angles and the steps above repeat (step F). Once images at multiple angles have been captured and processed, the results are averaged in step G to produce the final measurements, which are then output to the device's LCD display 11 in step H.
Dividing the number of trichomes detected in the image by the area of the sphere currently visible in the image produces the measurement for the trichome density. To allow for variations in density on the surface of the flower and to reduce measurement errors, multiple calculations are performed by rotating the platform 1 via the stepper motor 10 (see
The surface of the inflorescence is treated as a spherical surface (see
SAcap=2πrh
where r=radius of the sphere, and where h=height of the spherical cap.
The height of the spherical cap is defined by the FOV of the microscope objective lens, since the cap's diameter is by definition the visible distance across the cap, therefore the FOV=diameter of the spherical cap (see
(r−h)2+a2=r2(r−h)2=r2−a2r−h=√{square root over (r2−a2)}∴h=−√{square root over (r2−a2)}+r
For example, if the objective lens for a microscope is 10×/22 and the objective magnification is 40, then FOV=(10*40)/22=0.055 mm. Therefore, if a=0.055 mm/2=0.0275 mm, and if the inflorescence sample has a diameter of 1 cm, the radius r=5 mm. To solve for h:
h=−√{square root over ((5 mm)2−(0.0275 mm)2)}+5 mm h=−√{square root over (25 mm2−0.000756 mm2)}+5 mm h=−√{square root over (24.999244 mm2)}+5 mm h=−4.999244 mm+5 mm ∴h=0.000756 mm
and since:
Trichome density (TD), defined as number of trichomes per surface area:
TD=number of trichomes÷mm2
TD would therefore be calculated by counting the number of trichomes in the FOV, and dividing that number by SAcap. For example, if 10 trichomes were detected in the FOV using the lens in the example above, the trichome density would be:
TD=10 trichomes÷0.002375 mm2TD=1263 trichomes/mm2
In this case, 314.15 mm2 is the SA of a sphere with d=1 cm, therefore an inflorescence with 1 cm diameter with TD=1263 mm2 would be predicted to have 396,821 total trichomes.
FOV may also be calculated for a camera lens from its measured angular field of view (AFOV):
where h=length of the sensor and F=focal length of the lens. For example, if the sensor length is 8.38 mm (⅓″) and the focal length of the lens is 15 mm:
Field of view is then given by the following equation:
where D is the working distance (distance from object to sensor).
The following claims are thus to be understood to include what is specifically illustrated and described above, what is conceptually equivalent and what can be obviously substituted. Those skilled in the art will appreciate that various adaptations and modifications of the just-described preferred embodiments can be configured without departing from the scope of the invention. The illustrated embodiment has been set forth only for the purposes of example and that should not be taken as limiting the invention. Therefore, it is to be understood that, within the scope of the appended claims, the invention may be practiced other than as specifically described herein.
The present application is based on and claims the priority and benefit of U.S. Provisional Patent Application No. 63/326,849, filed on 2 Apr. 2022.
Number | Date | Country | |
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63326849 | Apr 2022 | US |