The invention provides devices and methods that can immobilize analytes of interest in chemical, analytical, biochemical and/or biological applications. Immobilizing analytes of interest from liquid samples allows for filtering, separating, purifying, quantifying, characterizing, enriching, and/or identifying analytes of interest prior to analysis or identification of the analytes of interest by mass spectrometry, high performance liquid chromatography, electrophoresis, gas chromatography, UV spectrophotometry, and other analytical techniques.
Currently available methods for the separation and purification of analytes in micro-volumes by centrifugation or column methods often result in undesirable sample loss. Since the amount and concentration of target analytes, such as proteins or bio-molecules, in a fluid sample is often low, the loss of even a small amount of the target analyte can represent a significant portion of the total analyte contained therein. In current methods, target analyte losses often result from the target analyte becoming trapped in filters or other column components. Liquid sample processing is difficult due to high resistance to fluid flow or undesirable increases in back pressure. For example, the device described in U.S. Pat. No. 6,200,474 consists of a micropipette tip containing a cast column material that is formed as a plug at the lower end of the tip. Since the material plugs the tip end through which the liquid sample is drawn, the flow of the liquid sample in both directions is impeded. Consequently, when such tips are used in multi-tip configurations, variations in sample fluid flow may cause inconsistencies in the quantities of target analytes absorbed in different tips and the quality of the sample separation process.
There is a need in the art for new and improved devices that provide more efficient methods for enriching and purifying target analytes in micro-volumes of fluid samples with minimal samples loss and little or no back pressure. The invention is directed to this, as well as other, objectives.
The invention provides improved liquid sample processing by separation and enrichment of target analytes from liquid samples due to rapid and efficient immobilization of the analytes to the binding materials on the surfaces of inserts inside pipette tips and/or housings. The size and shape of the insert can be controlled to produce a conformal annular gap between the surface of the insert and the inside wall of the housing. The conformal annular gap provides an open channel for the liquid sample to flow through at high diffusion rates that favor rapid analyte binding and minimal back pressure thereby allowing more rapid sample processing at higher enrichment ratios than can be achieved with currently available tip formats.
The invention provides inserts that are at least partially coated with binding materials that can immobilize an analyte of interest from a liquid sample. The binding materials can optionally be in the form of a matrix with one or more polymers. In other embodiments, the insert can optionally be coated with secondary supports, where the secondary supports are coated with the binding materials, but where the insert itself is not coated with the binding materials. In still other embodiments, both the inserts and the secondary supports can be coated with the binding materials that have at least one functionality that can immobilize an analyte of interest. The inserts have a three-dimensional body that is of a size and shape that is capable of being placed into a housing. In another embodiment, the invention provides a linear strip or an array comprising a plurality of inserts. For example, the array can contain 2, 4, 8, 12, 16, 24, 48, 96, 384 or 1,536 inserts of the invention.
The invention provides housings defining a volume and comprising an open top end, and an insert comprising binding materials that have at least one functionality that can immobilize an analyte of interest; where the insert is within the volume of the housing; where the insert does not significantly obstruct analyte flow through the housing; and where the insert does not create substantial back pressure. In other embodiments, the insert can optionally be coated with secondary supports, where the secondary supports are coated with the binding materials, but where the insert itself is not coated with the binding materials. In still other embodiments, both the inserts and the secondary supports can be coated with the binding materials. The device can comprise a plurality of housings in the form of a linear strip or an array having, for example, 2, 4, 8, 12, 16, 24, 48, 96, 384 or 1,536 housings.
The invention provides methods for enriching an analyte of interest using the inserts described herein. In one embodiment, the methods comprise the steps of (i) providing an insert that is at least partially coated with binding materials that are capable of reversibly immobilizing an analyte of interest; (ii) providing a housing with a closed bottom end where the housing comprises a liquid sample which comprises the analyte of interest and, optionally, one or more contaminates; (iii) immersing the insert into the liquid in the housing for a period of time sufficient for the binding materials to immobilize the analyte of interest; (iv) removing the insert from the housing; (v) washing the insert with an appropriate solvent to elute the analyte of interest from the binding materials; and (vi) collecting the enriched analyte of interest. In an alternative embodiment, the insert can be placed into the housing and then the liquid sample can be added to the housing. In other embodiments, steps (iii) and (iv) can be repeated two, three, four, five or more times. The methods can be manual or automated.
The invention provides methods for enriching an analyte of interest comprising the steps of (i) providing an array of linked inserts where the inserts are at least partially coated with binding materials that are capable of reversibly immobilizing an analyte of interest; (ii) providing an array of linked housings with a closed bottom end, where the housings comprise a liquid sample, and where the liquid sample comprises the analyte of interest and, optionally, one or more contaminates; (iii) immersing the array of inserts into the liquid sample in the array of housings for a period of time sufficient for the binding materials to immobilize the analyte of interest; (iv) removing the array of inserts from the array of housings; (v) washing the array of inserts with an appropriate solvent to remove or elute the analyte of interest from the binding materials; and (vi) collecting the enriched analyte of interest. In an alternative embodiment, the array of inserts can placed in the array of housings, and then the liquid can be added to the array of housings. In other embodiments, steps (iii) and (iv) can be repeated two, three, four, five or more times. The methods can be manual or automated.
The invention provides methods for enriching an analyte of interest comprising the steps of (i) providing a first housing that has at least one open end (preferably an open bottom end) and an insert, wherein the insert is at least partially coated with binding materials that are capable of reversibly immobilizing an analyte of interest; (ii) providing a second housing with a closed bottom end, where the second housing comprises a liquid sample which comprises the analyte of interest and, optionally, one or more contaminates; (iii) immersing the first housing into the liquid sample in the second housing for a period of time sufficient for the binding materials to immobilize the analyte of interest; (iv) removing the first housing from the second housing; (v) washing an appropriate solvent through the first housing to remove the analyte of interest from the binding materials; and (vii) collecting the enriched analyte of interest. In an alternative embodiment, the first housing can be placed into the second housing, and then the liquid sample can be added to either the first housing and/or the second housing. In another alternative embodiment with respect to step (vi), the insert can be removed from the first housing prior to washing with an appropriate solvent to remove the analyte of interest. In other embodiments, steps (iii) and (iv) can be repeated two, three, four, five or more times. The methods can be manual or automated.
In another embodiment, the invention provides methods for enriching an analyte of interest comprising the steps of (i) providing an array of first linked housings that have at least one open end (preferably an open bottom end) and an insert, where the insert is at least partially coated with binding materials that are capable of reversibly immobilizing an analyte of interest; (ii) providing an array of second (optionally linked) housings that have a closed bottom end, where the second housings comprise a liquid sample, and where the liquid sample comprises the analyte of interest and, optionally, one or more contaminates; (iii) immersing the array of first housings into the liquid sample in the array of second housings for a period of time sufficient for the binding materials to immobilize the analyte of interest; (iv) removing the array of first housings from the array of second housings; (v) washing an appropriate solvent through the array of first housings to remove the analyte of interest from the binding materials; and (vi) collecting the enriched analyte of interest. In an alternative embodiment with respect to step (i), an array of inserts can be placed into the array of first housings, and the inserts can optionally remain in the form of an array or the inserts can be detached from their array to form individual inserts in the housing array. In an alternative embodiment, the array of first housings can be placed into the array of second housings, and then the liquid sample can be added to either the array of first housings and/or the array of second housings. In another alternative embodiment with respect to step (vi), the inserts or array of inserts can be removed from the array of first housings prior to washing with an appropriate solvent to remove the analyte of interest. In other embodiments, steps (iii) and (iv) can be repeated two, three, four, five or more times. The methods can be manual or automated.
These and other aspects of the invention are described in more detail herein.
The invention provides improved devices and methods that facilitate analyte preparation, including analyte enrichment, purification, separation, filtration, and/or identification processes that minimize sample loss and process variability. The devices and methods are ideally suited for efficient automated (e.g., robotic) and manual applications (e.g., pipettors) using microliter sample volumes because of their low back pressure (i.e., low resistance to liquid flow) characteristics.
The inserts of the invention can be any three-dimensional size or shape. The inserts can be shaped or molded to be complementary to the inside volume of a housing (e.g., pipette tip). For example, the insert can be in the three-dimensional shape of a cube, cylinder, sphere, oval, cone, rectangle, pyramid, or combination thereof. As another example, the cross-sectional shape of the insert can be in the form of a square, rectangle, pentagon, hexagon, octagon, star, triangle, or combination thereof. The insert can be flexible, rigid or a combination thereof. In other embodiments, the insert can have a vertically ribbed surface, where the peaks and valleys of the ribbed surface provide liquid flow channels between the insert and the inside wall of a housing when the insert is placed within a housing. The inserts can be porous or non-porous. The inserts can be cast, polymerized or molded. The inserts can be magnetic, magnetizable and/or have a magnetic core. The inserts can be capable of floating in a liquid. The insert can be made of one or more inert materials. Exemplary inert materials include polymers, organic materials, inorganic materials, metals, ceramics, and the like. Exemplary polymers that can be used to make the insert include polytetrafluoroethylenes (e.g., TEFLON® from DuPont), polysulfones, polyethersulfones, cellulose acetates, polystyrenes, polypropylene, polyvinylchlorides, polycarbonates, polystyrene/acrylonitrile copolymers, polyvinylidenefluorides, or mixtures of two or more thereof. The inserts can be made of and/or covered with fabric, woven fabrics, mesh, fibers, paper and the like.
The inserts of the invention can be in a singular format, a strip format (e.g., a linear strip) or an array format. The strip or array can comprise a plurality of inserts, for example, 2, 4, 8, 12, 16, 24, 48, 96, 384 or 1,536 inserts of the invention. The inserts can be used with microtiter plates in which the wells of the microtiter plates serve as housings or, alternatively, as reservoirs for the liquid samples to be purified by means of the inserts of the invention.
The inserts of the invention are at least partially coated with one or more binding materials that have at least one functionality that can immobilize an analyte of interest when a liquid sample containing the analyte of interest flows past and/or is in contact with the binding materials. “Immobilize” means that the binding materials are capable of physically and/or chemically (e.g., covalent, ionic, hydrophobic, hydrogen bonding, Van der Waals dispersion forces, dipole-dipole attractions) bonding to or adhering an analyte of interest. The inserts can be at least partially coated with one or more different binding materials that can immobilize one or more different analytes of interest. The binding materials can reversibly or irreversibly immobilize an analyte of interest. Immobilizing an analyte of interest is useful and necessary to purify, enrich, filter and/or identify the analyte of interest.
In one embodiment, the binding materials provide substantially complete reversible immobilization of the analyte of interest. Substantially complete reversible immobilization of the analyte of interest (e.g., substantially complete elution of analytes bound to the binding materials) in the same relative proportions and amounts as found in the original sample is highly desirable. Efficient purification and enrichment procedures for analytes should qualitatively and quantitatively reflect the composition of the analyte in the original liquid sample (e.g., for mass spectral analysis of analyte profiles).
Exemplary methods to apply or coat the binding materials onto the insert include chemical bonding (e.g., hydrophobic, covalent, ionic, and the like) of the binding materials to the insert or to a coating (e.g., fabric, chromatographic material) on the insert and/or physical bonding of the binding materials via chemicals, heat, pressure and/or etching to the insert or to a coating on the insert. For example, the binding materials can be in admixture with a coating on the surface of the insert; the binding materials can be in admixture with the surface of the insert; and/or the binding materials can be partially embedded in the surface of the insert. In alternative embodiments, the binding materials of the invention can be located on the inside of the insert, in which case the insert is preferably a porous insert. In still other embodiments, the binding materials can be located on both the outside of the insert and the inside of the insert.
The binding materials can be any known in the art. One skilled in the art will readily be able to select the binding materials based on the binding capacity between the binding materials and the analyte of interest. The binding materials are substantially inert and stable in gas environments (e.g., air). Exemplary binding materials include polymers, chromatographic materials, nucleotides, proteins, ligands, enzymes, antibodies, dyes, bacteria, cells, cyclodextrins, lectins, metal ions, or mixtures of two or more thereof. In other embodiments, the binding materials can be poly-L-lysine, poly-D-lysine, DEAE-dextran, poly-L-arginine, poly-L-histine, poly-DL-ornithine, protamine, collagen type 1, collagen type IV, gelatin, fibronectin, laminin, chondronectin, or mixtures of two or more thereof. In one embodiment, the binding materials reversibly immobilize one or more analytes of interest.
In one embodiment, the binding materials that can immobilize an analyte of interest can be one or more chromatographic materials. Exemplary chromatographic materials include materials for ion-exchange chromatography, size-exclusion chromatography, affinity chromatography, gradient chromatography, hydrophobic chromatography, chiral chromatography, reverse phase chromatography, and mixtures of two or more thereof. Exemplary chromatographic materials include polysaccharides (e.g., cellulose, agarose, crosslinked polysaccharide beads {commercially available as SEPHAROSE® and SEPHADEX®}), polymers (e.g., polystyrene, polypropylene, polytetrafluoroethylenes {e.g., TEFLON® from DuPont}, styrenedivinyl-benzene based media, polymer beads, poly(methyl methacrylates) {PERSPEX®}, polyacrylamide), silicas (e.g., silica, silica gel, silica gel-containing phosphors, glass, controlled pore glass {CPG}), and/or metals and/or metal oxides (e.g., aluminum oxide, zirconium, titanium). The chromatographic materials can be chemically and/or physically modified, and may be porous or non-porous. For example, styrenedivinyl-benzene based media may be modified with, for example, sulphonic acids, quarternary amines and the like. Chromatographic materials may be physically and/or chemically modified with, for example, enzymes, antibodies, cyclodextrins, lectins, metal ions, and/or ligands. The ligands can be C1-24 alkyl ligands, such as C2, C4, C6, C8, C10, C12, C14, C16 and/or C18 alkyl ligands. The chromatographic materials may have any regular (e.g., spherical) or irregular shape, or may be shards, fibers, mesh, cloth, powders or mixtures thereof. The chromatographic materials can have a particle size of about 1 μm to about 1,000 μm; from about 5 μm to about 500 μm; or from about 10 μm to about 100 μm.
In one embodiment, the binding materials are reverse phase chromatographic materials that are bonded to a polymeric coating (e.g., polytetrafluoroethylene) on the insert and/or to a polymeric insert. In another embodiment, the binding materials are alkyl ligands covalently bonded to a polymeric coating and/or a polymeric insert. The alkyl ligands can be C1 to C24 alkyl ligands or mixtures of two or more thereof. In other embodiments, the alkyl ligands are C2, C4, C6, C8, C10, C12, C14, C16, C18 alkyl ligands or mixtures of two or more thereof. In other embodiments, the alkyl ligands are C2, C4, C8, C12, C18 alkyl ligands or mixtures of two or more thereof. In another embodiment, the invention provides C18 alkyl ligands covalently bonded to polytetrafluoroethylene (i.e., TEFLON® by DuPont), where the polytetrafluoroethylene is a coating on the insert and/or is the insert itself.
In one embodiment, the binding materials that can immobilize an analyte of interest can be in a matrix (e.g., admixture) with one or more polymers known in the art. Exemplary polymers include polytetrafluoroethylenes (e.g., TEFLON® by DuPont), polysulfones, polyethersulfones, cellulose acetates, polystyrenes, polyvinylchlorides, polycarbonates, polystyrene/acrylonitrile copolymers, polyvinylidenefluorides, or mixtures of two or more thereof. The polymers used in the matrix can be sticky polymers applied to the insert in volatile solvents or as solutions. These matrix polymers generally have minimal affinity for the analytes of interest and serve merely to partially embed the binding materials. The inserts of the invention can be pre-coated with the matrix polymers, followed by coating with the binding materials. Alternatively, a matrix coating comprising an admixture of the polymers and binding materials can be applied to the surface of the inserts. In one embodiment, the matrix coating comprises one or more hydrophilic polymers and one or more binding materials. Partially embedded binding materials (e.g., 10-100 μm sized hydrophobic chromatographic materials bearing alkyl ligands [e.g., C4, C8, C12 and/or C18 alkyl ligands]) can be used to modulate the width of the annular gap between the insert and the housing to increase the binding capacities, binding diffusion rates and enrichment ratios of the binding materials and analytes of interest. The enrichment ratio, defined as the ratio of the applied liquid sample volume to the elution volume, is preferably greater than 10 for applications in mass spectral analysis, electrophoresis and other applications where 1-2 μl liquid samples are analyzed without prior concentration of the analytes of interest.
In other embodiments, the insert can optionally be coated with one or more secondary support materials that are at least partially coated (e.g., physically and/or chemically modified) with binding materials that can immobilize an analyte of interest. The secondary supports can be coated on the insert by methods known in the art such as, for example, chemical bonding (e.g., hydrophobic, covalent, ionic, and the like) and/or physical bonding via chemicals, heat, pressure and/or etching. The secondary supports can be made of the same or different material as that of the insert itself, as described above. The secondary supports can be coated with binding materials such as those described herein.
The analyte of interest (i.e., target analyte) can be any material known in the art. Exemplary analytes of interest include biomolecules, DNA, RNA, nucleotides, polynucleotides, oligonucleotides, proteins, peptides, amino acids, carbohydrates, polymers, ligands, enzymes, antibodies, dyes, bacteria, cells, cyclodextrins, lectins, metal ions, and other chemical compounds, chemical moieties, or biologics, or mixtures/combinations of two or more thereof having affinities for specific biomolecules or groups of biomolecules. The analyte of interest preferably originates from a liquid sample. The analyte of interest can, for example, be dissolved and/or suspended in a liquid sample. The liquid sample can be aqueous or organic. In one embodiment, the liquid sample can be a mammalian bodily fluid, such as blood or urine. In one embodiment, the liquid sample is an aqueous liquid sample.
After the binding materials on the insert immobilize an analyte of interest, the analyte of interest can be released from the insert and binding materials using an appropriate solvent that would be capable of breaking the physical and/or chemical bond between the binding materials and the analyte of interest.
Although the invention has been described in detail herein, the following figures exemplify various non-limiting embodiments of the invention. One skilled in the art will appreciate that variations can be made to the devices and methods shown in the figures in view of the description herein.
In another embodiment, the invention provides a novel housing containing an insert of the invention. The insert is located in what would normally be the flow path or center of the housing. The insert of the invention does not significantly block the flow path and does not create significant back pressure to the flow path. In one embodiment, the insert is suspended in the flow path within the housing, not creating significant back pressure to the flow path, and not significantly obstructing the flow through the housing, including the flow of liquid sample through the optional open bottom end of the housing.
“Not creating significant back pressure” means that the back pressure created by the insert of the invention is about 0 to about 15 psi greater than the back pressure when the insert of the invention is not being used. In other embodiments, “not creating significant back pressure” means that the back pressure created by the insert of the invention is about 0 to about 10 psi; about 0 to about 5 psi; or about 0 to about 3 psi greater than the back pressure when the insert of the invention is not being used.
Generally, the open volume in the area of the housing in which the insert of the invention is located (including any coating on the inside walls of the housing) is about 60% or less of the total volume of the housing excluding the insert and excluding any coating on the inside walls of the housing. In other embodiments, the open volume in the area of the housing in which the insert of the invention is located (including any coating on the inside walls of the housing) is about 50% or less, about 40% or less; about 30% or less; about 20% or less; or about 10% or less of the total volume of the housing excluding the insert and excluding any coating on the inside walls of the housing.
The housing can be of any shape or size in any configuration that is suitable for a given set of experimental conditions. The housing can be tube, column, pipette tip, syringe, container, flask, petri dish, test tube, beaker, microtiter well plates and the like. The housing can define a volume from femtoliters to thousands of liters; or from submicroliters to liters. In one embodiment, the housing defines a volume from about 0.0001 milliliters to about 1 liter; or from about 0.0001 milliliters to about 100 milliliters; or from about 0.001 milliliters to about 10 milliliters. In another embodiment, the housing defines a volume from about 0.1 microliter to about 10 milliliters.
The housing can be made of one material or a combination of materials known in the art, and can optionally have one or more coatings on the inside and/or outside of the housing. In one embodiment, the housing comprises a polymer, a glass, a metal, a ceramic, or a mixture of two or more thereof. Exemplary polymers include polytetrafluoroethylene (e.g., TEFLON® by DuPont), polypropylene, polysulfone, polyethersulfone, cellulose acetate, polystyrene, polystyrene/acrylonitrile copolymer and PVDF. The glass can be PYREX® (Corning, Inc.). The housing can be transparent, translucent or opaque. In one embodiment, the inside walls of the housing are coated with one or more polymers, such as polytetrafluorethylene (e.g., TEFLON® by DuPont).
The inside wall of the housing may optionally be modified (e.g., physically and/or chemically) with any binding materials known in the art that are capable of immobilizing an analyte of interest, such as those described herein. The binding materials can be in the form of a matrix, such as that described herein.
The housing can be in a singular format, a strip format (e.g., a linear strip) or an array format. The strip format and array format can comprise a plurality of housings, such as a 2, 4, 8, 12, 16, 24, 48, 96, 384 or 1,536-housings. For example, a 96 pipette tip housing array can be used for the simultaneous preparation of up to 96 samples. Such multi-tip configurations can be designed with different numbers of tips forming the multi-tip system.
The insert is suspended in the liquid sample flow path within the housing. The insert can be a removable insert or the insert can be physically attached to the interior of the housing, optionally through a support mechanism. The insert can be in physical contact with but not connected to the inside walls of the housing provided that the liquid sample flow path is not significantly obstructed and provided that the insert does not create significant back pressure. Alternatively, the insert can be physically connected to the inside walls of the housing provided that the liquid sample flow path is not significantly obstructed and provided that the insert does not create significant back pressure. In one embodiment, the insert is physically touching the inside walls of the housing, but is not physically connected to the inside walls of the housing.
In another embodiment, the insert can be attached to and/or suspended from a structure that is attached to a wall of the housing, provided that the structure does not significantly obstruct the analyte flow through the housing and provided that the structure does not create significant back pressure. Generally, the structure will be closer to the top end of the housing, although other embodiments can be used. The structure can be any inert material that does not interfere with the liquid sample or the analyte of interest. The structure can optionally be made of the same material as the housing and/or the insert. The structure can be physically attached to the housing; can be set within the housing after the housing is made and before sample preparation begins (i.e., removably attached); or can be suspended within the housing from a structure outside the housing. In one embodiment, the structure can be coated with binding materials, such as those described herein, that are capable of immobilizing an analyte of interest
In one embodiment, the insert can be magnetic, can have a magnetic core, and/or can be magnetizable, such that the insert can be freely suspended within the analyte flow path in the housing during use. Such an embodiment requires the use of a magnet or magnetic field outside the housing.
In another embodiment, the insert is inside the housing. When a liquid sample enters the housing the insert is capable of floating in the liquid sample. An insert that floats in the liquid sample will not significantly obstruct the flow path and will not create significant back pressure.
As one example for optimal analyte immobilization, the liquid sample can be aspirated through the flow channels created by the insert in the housing to ensure optimal binding of the desired analyte of interest to the binding materials on the insert. The analyte of interest can then be eluted from the binding materials on the insert using different solvents.
The elution volume is preferably less than or equal to the void volume in the channel between the walls of the housing and the coated portion of the insert and can range from about 1 to about 100 μl for optimal analyte enrichment starting with a sample volume of about 20 μl to about 1,000 μl, respectively. The elution volume is optimally a fraction of the gap volume or space between the walls of the housing and the insert (including the volume of the support and coating). The enrichment ratio is the sample volume divided by the elution volume. For example, a sample volume of 100 μl and an elution volume of 5 μl yields an enrichment ratio of 20. The enrichment ratio for the device of the invention is preferably about 10 or more, about 15 or more, or about 20 or more.
Although the invention has been described in detail herein, the following figures exemplify various non-limiting embodiments of the invention. One skilled in the art will appreciate that variations can be made to the devices shown in the figures in view of the description herein.
The housings 20 of the invention can have a cap (not shown) or other mechanism (not shown) to close one or both ends of the housing 20. Such a cap or similar device may be physically attached or removably attached to the housing 20. For example, the cap can be a snap-on cap or a screw-on cap.
With reference to
As described in U.S. Pat. No. 6,537,502 and shown in
As described in U.S. Pat. No. 6,416,716 and shown in
The devices of the invention can be used in any biological, chemical, and/or biochemical application, such as those described herein. The devices of the invention may be used in bi-directional fluidic applications (e.g., from the bottom end of the housing to the top end of the housing and/or from the top end of the housing to the bottom end of the housing). The devices of the invention may be used with any robotic system or automated apparatus, such as computer-controlled bench-top systems designed for performing pipetting operations.
The devices of the invention may be used for filtering, separating, enriching and/or purifying analytes of interest (e.g., biomolecules such as oligonucleotides, peptides, DNA, RNA, and proteins) from liquid samples using binding materials, such as chromatography materials. Chromatographic methods for filtering, separating and/or purifying bio-materials are known in the art. In the invention, analytes may be filtered, separated and/or purified by adding the liquid sample containing the analytes to the top end of the pipette tip. Alternatively, analytes may be filtered, separated and/or purified by pipetting the liquid sample containing the analytes up from the bottom end into the pipette tip from, for example, a well plate, beaker, or other source. Solvents (e.g., weak eluting solvents) may then be added to the housing to remove the impurities from the analyte and to maintain the analyte of interest in the housing. After the impurities have been removed, the purified analyte may be eluted from the binding materials on the insert with an appropriate solvent or buffer (e.g., relatively stronger eluting solvent or buffer).
The housings of the invention may be use in any repetitive chemical process requiring synthesis or degradation. For example, the housings may be used in the synthesis of a variety of oligomers, such as polypeptides, polysaccharides, and oligonucleotides. The housings of the invention may also be used for preparing biomolecules (e.g., oligonucleotides, peptides, DNA, RNA, proteins). For example, oligonucleotides may be prepared using the housings of the invention. An initial protected nucleoside may be bound via the terminal 3′-hydroxyl group to a solid support (e.g., chromatographic material) in the housing. The initial protected nucleoside may be bound to the insert when the housing is made. Alternatively, the initial protected nucleoside may be added to a housing which has been made to contain appropriate chromatographic materials that will bind and retain the nucleoside.
Reagents and solvents may be added to the devices to consecutively remove and add sugar protecting groups to generate specific chemical moieties to provide a stepwise addition to the growing oligonucleotide chain. The steps for preparing oligonucleotides, e.g., deblocking, activating/coupling, oxidating, capping, are known in the art and may be followed to produce oligonucleotides in the devices of the invention. Once the oligonucleotides are formed, they may be removed from the devices using known reagents.
Cell lines (including hybridomas) can be cultured in the devices of the invention, including, for example, cell lines available from the ATCC and the ECACC. The cell cultures can be grown from normal, embryonic and malignant tissues. For adherent cells, the inserts in the housings may have a suitable surface on which the cells may adhere. For growing adherent cells, the housing and inserts may preferably comprise polystyrenes, polypropylene, polytetrafluoroethylenes, polyvinylchlorides, polycarbonates, and/or titanium.
The devices of the invention may be used for running assays. Assays known in the art involve complementary binding pairs including, for example, enzyme-linked immunosorbent assays (ELISA), sandwich assays, competitive assays, latex agglutination assays, radio-immunoassays (RIA), fluorescent immunoassays (FIA), and the like. To use the devices of the invention to conduct a binding assay (e.g., receptor-ligand assay), a liquid sample comprising a protein analyte (e.g., receptor) may be added to the housing that comprises a chromatographic material capable of binding the protein analyte. Alternatively, the housing may be constructed to contain the proteins of interest. A second analyte comprising small molecules (e.g., ligand) may then be added to the housing, but which can only bind to the proteins in the housing. After the second analyte passes through the housing, the bound protein-small molecule materials may then be eluted with the appropriate solvent or buffer. Quantitative and/or qualitative assays may then be performed to further study the eluted analytes. By choosing appropriate chromatographic materials, the devices of the invention may also be used to study DNA-protein interactions, protein-protein interactions, and many other interactions between biomolecules and other molecules.
In another embodiment, the invention provides an apparatus for identifying analytes comprising a housing and an insert, where the insert is an indicator insert. The indicator can be any known in the art, such as dyes. The indicator insert can be porous or non-porous. The insert can be coated with a chemical dye or can be a porous insert that contains a dye. The dye can be a solid (e.g., powder, pellets, microspheres and the like) or a liquid. The insert can be of any size or shape, and can float within the housing and/or be secured within the housing as described herein. In this embodiment of the invention, the sample comprising the analyte is brought into the housing and, upon contact of the analyte with the insert, will activate the dye to produce a color change on/in the insert. The color change will indicate the presence of an analyte of interest. If there is no color change, the analyte of interest is not present.
The devices, inserts and/or housings of the invention may be in the form of a kit. The kit may comprise the devices, inserts and/or housings of the invention and any materials known in the art, such as any materials used in performing the methods described herein. For example, the kit may comprise one or more inserts, housing (e.g., pipette tips of the invention or other pipette tips), caps for the housings, collection tubes, well plates, clamps, membranes, growth blocks, filters, plate rotators, syringes, chromatographic materials, reagents, buffers, cells, and/or a user manual. The term “kit” includes, for example, each of the components combined in a single package, the components individually packaged and sold together, or the components presented together in a catalog (e.g., on the same page or double-page spread in the catalog).
The following examples are for purposes of illustration only and are not intended to limit the scope of the appended claims.
An array of multiple inserts will be prepared by dipping a three-dimensional polymeric body into a polymer coating solution. The polymer coating solution will be at a temperature slightly above the melting point of the polymer and the array of inserts will be dipped into the polymer coating solution for a period of time sufficient to coat the inserts. Thereafter, the array of inserts will be removed from the polymer coating solution and will be air dried.
Separately, a powder bath that will contain binding materials that can reversibly immobilize a analyte of interest will be prepared. For example, C1-8 alkyl ligands will be heat dried in a shallow dish at a temperature from about 80° C. to about 90° C. The array of inserts that have previously been coated with a polymer (e.g., polytetrafluoroethylene) will then be dipped/rolled in the powdered C18 alkyl ligands at a temperature where the polymer (e.g., polytetrafluoroethylene) softens so that the C18 alkyl ligands will adhere to the polymer (e.g., polytetrafluoroethylene) on the inserts. The C18 alkyl ligands can be partially embedded in the polymer (i.e., this can be considered a matrix). Loose C18 alkyl ligands will be tapped off of the inserts.
The method described in Example 1 will, in one embodiment, produce the insert array shown in
As shown in
This embodiment of the invention referenced in
This example demonstrates the use of insert arrays of the invention for producing analytes for analytical techniques, e.g., mass spectrometry, high performance liquid chromatography, electrophoresis and the like.
With reference to
With reference to
With reference to
Thereafter, the inserts 11 will be washed to elute the analyte of interest o into another housing or directly to a mass spectrometer target. One skilled in the art will be able to select the appropriate solvent(s) to elute the analyte of interest o from the particular complex 106 that was formed. This will result in a purified and concentrated analyte of interest o.
Various modifications of the invention, in addition to those described herein, will be apparent to one skilled in the art from the foregoing description. Such modifications are intended to fall within the scope of the appended claims.