In a number of contexts, there is a need in the life sciences to quickly and accurately cycle small volumes of a fluid sample between temperatures so as to conduct a desired reaction. In healthcare, such a reaction may be used to diagnose a number of different conditions in a patient from which the fluid sample has been extracted. In particular, the ability to cycle fluid repeatedly between different temperatures is a bottleneck for the Polymerase Chain Reaction (PCR). This reaction duplicates DNA and is relevant in a number of medical testing scenarios.
The accompanying drawings illustrate various implementations of the principles described herein and are a part of the specification. The illustrated implementations are merely examples and do not limit the scope of the claims.
Throughout the drawings, identical reference numbers designate similar, but not necessarily identical, elements.
As noted above, in the life sciences, including in healthcare, there may be a desire to quickly and accurately cycle small volumes of a fluid sample between temperatures so as to conduct a desired reaction. In particular, the ability to cycle fluid repeatedly between different temperatures is used in the Polymerase Chain Reaction (FOR) which duplicates deoxyribonucleic acid (DNA) and is relevant in a number of medical testing scenarios.
Specifically, a PCR operation makes millions to billions of copies of a specific DNA sample. As such, a scientist may take a small sample of DNA and amplify it to a large number of copies, such that it may be studied in detail. During PCR, a sample is quickly heated to around 100 degrees Celsius (C) and then cooled to around 50 degrees C. This process is repeated tens of times.
While operations such as PCR greatly enhance the ability of scientists to carry out a variety of experiments, some advancements to devices that carry out PCR may further increase its efficacy and use in scientific laboratories and doctors' offices.
For example, some systems may not be able to change the fluid temperature rapidly. For example, some PCR devices take around 30 minutes to 1 hour to complete the PCR cycles. Moreover, for PCR reactions, fluid flows through regions of specified temperatures, for example between 20 and 40 times, to complete the reaction. Accordingly, some PCR devices are large as they are designed to have long enough channels to contain 20 to 40 repetitions of each temperature zone.
Accordingly, the following description describes a device for addressing these and other issues. Specifically, the present specification describes devices and methods that rapidly and accurately change the temperature of small volumes of fluid and may be particularly implemented in a PCR operation where fluid temperature is to be changed multiple times. Specifically, the devices of the present specification include a microfluidic channel with reservoirs on either end. Disposed along the microfluidic channel are heating elements such as resistors that can be tuned to heat the fluid to different temperatures. Inertial pumps at either end of the microfluidic channel move the fluid back and forth past the heating elements, which heating elements then cyclically heat the fluid, as in a PCR operation.
In an example the device includes a microfluidic channel; a number of heating elements along the microfluidic channel; and an inertial pump at each of opposite ends of the microfluidic channel to oscillate the fluid sample along the microfluidic channel.
In an example, the device includes a fluid reservoir at each end of the microfluidic channel. In this example, one of the inertial pumps is located at each interface between the microfluidic channel and one of the fluid reservoirs.
In an example, the device includes a fluid reservoir. In this example, the microfluidic channel has opposite ends that are both in fluid connection with the fluid reservoir. Still in this example, one of the inertial pumps is located at each interface between the microfluidic channel and the reservoir. In an example, the heating elements may be thin-film resistors. Thin film resistors are a type of resistor that includes a thin resistive layer disposed on a substrate. For example, the thin-film resistor may have a thickness of between 0.05 μm and 0.5 μm. In some examples, the thickness can be around 0.1 μm. A thin film resistor may be formed by depositing a metal layer on a substrate. This metal layer may be formed of materials such as chromium, nickel, and nichrome. The metallic layer may be patterned using photolithography and subtractive processes to tune a resistive value.
As described above, the reaction conducted in the device may be a Polymerase Chain Reaction (PCR). In this example, the number of heating elements is three where each heating element is to maintain a different temperature in the PCR. In such an example, a first heating element corresponds to a denature phase of the PCR, a second heating element corresponds to an anneal phase of the PCR, and a third heating element corresponds to an extension phase of the PCR.
In an example, only one heating element is disposed along the microfluidic channel. In an example, the device includes an injector to insert a bubble of immiscible fluid on either side of the fluid sample in the microfluidic channel. Still further, in an example each inertial pump may be a thermal inkjet pump.
The present description also describes a method of performing a Polymerase Chain Reaction (PCR). According to the method, a fluid sample is introduced into a microfluidic channel. The fluid sample is oscillated in two directions in the microfluidic channel. A number of heating elements disposed along the microfluidic channel repeatedly heat the fluid sample.
In an example, the fluid sample is separated with a bubble of immiscible fluid on either side of the fluid sample within the microfluidic channel.
In an example, a first heating element is heated to a denature temperature and a second heating element is heated to an anneal temperature. In this example, the anneal temperature is lower than the denature temperature. Still in this example, a third heating element is heated to an extension temperature, which extension temperature is between the denature and anneal temperatures.
In a particular example, a first of the heating elements is heated to a denature temperature for a denature phase of the PCR. In this particular example none of the heating elements are heated during an anneal phase of the PCR and all of the heating elements are heated to an extension temperature during an extension phase of the PCR. In this particular example, after heating the fluid sample with the first heating element at the denature temperature, all heating elements are turned off and the fluid sample is moved in the microfluidic channel. After the anneal phase of the PCR, the fluid in the microfluidic channel is again moved and all the heating elements are heated to the extension temperature. After the extension phase of the PCR, the fluid sample is returned to an initial position.
The present description also describes a Polymerase Chain Reaction (PCR) device for conducting a PCR on a fluid sample. In various examples, the PCR device includes a microfluidic channel; a number of heating elements along the microfluidic channel; an inertial pump at each of opposite ends of the microfluidic channel to oscillate the fluid sample along the microfluidic channel; a side channel fluidly connected to the microfluidic channel for introducing the fluid sample into the microfluidic channel; and a pump at the junction of the microfluidic channel and side channel to provide a microfluidic valve between the side channel and microfluidic channel.
In some examples, the reaction device 100 is a microfluidic structure. Such microfluidic structures may be a few square millimeters to a few square centimeters, and may provide efficient small-scale functionality. In other words, the components, i.e., microfluidic channel 130, heating elements 110, and inertial pumps 120 may be microfluidic structures. A microfluidic structure is a structure of sufficiently small size (e.g., of nanometer sized scale, micrometer sized scale, millimeter sized scale, etc.) to facilitate conveyance of small volumes of fluid (e.g., picoliter scale, nanoliter scale, microliter scale, milliliter scale, etc.). As a particular example, the microfluidic channel 130 may be, for example, about 1-2 millimeter (mm) in length. The width of the channel 130 may be, for example, 20 microns. A 20 micron wide infinite planar channel has the following pressure drops for a fluid of 1 centipoise (cP): 0.75 millibar per millimeter (mbar/mm) at 1 millimeter per second (mm/s); 7.5 mbar/mm at 10 mm/s, and 75 mbar/mm at 100 mm/s.
The reaction device 100 also includes a number of heating elements 110 along the microfluidic channel 130. The heating elements 110 may be used to raise the temperature of the fluid sample passing through the microfluidic channel 130. For example, as described above, in certain operations, such as PCR, it may be desirable to cyclically heat the fluid sample. In such an example, the heating elements 110 carry out such heating. In one example, each heating element 110 includes a thin-film resistor. That is the heating elements 110 may include a resistor formed on a substrate such as a layer of silicon material. While
The reaction device 120 also includes an inertial pump 120 at each of opposite ends of the microfluidic channel 130 to oscillate the fluid sample along the microfluidic channel 130. The inertial pumps 120, when not operating, allow fluid to flow in the opposite direction from that which the inertial pump 120 acts. Accordingly, with two inertial pumps 120, that are alternately activated, fluid can by oscillated back and forth in the microfluidic channel 130. Specifically, the inertial pump 120 shown on the right can be operated to drive a fluid sample in the microfluidic channel 130 to the left in the drawing, while the inertial pump 120 on the left is inactive. Then, the inertial pump 120 shown on the left can be operated to drive the fluid sample through the microfluidic channel 130 to the right in the drawing. The fluid can also be left stationary when both inertial pumps 120 are inactive.
The inertial pumps 120 may be based on inkjet technology, that is the inertial pumps 120 may be thermal inkjet pumps. In such an implementation, the inertial pumps 120 include a drive element that forces fluid movement. The drive element could be a heater, such as a heating resistor, or a piezoelectric element. In an inertial pump 120 with a heating drive element, the heater, perhaps a resistor, heats the adjacent fluid. This causes the heated fluid to vaporize, creating a bubble that pushes on the fluid sample to pump the fluid in the desired direction. A single thermal inkjet pump with pressure head of 54 mbar can pump fluid at 210 mm/s in a 20×20 um microfluidic channel 130.
In a piezoelectric inertial pump, an electric field is alternately applied to the piezoelectric drive element. This causes the element to expand and contract, pushing on the fluid of the fluid sample to pump the fluid in a desired direction.
With regard to power needs, a thermal inkjet pump can move about 8 picoliter (pL) per pulse with about 1 microjoule of energy. At 8 pL/pulse, it would take 30 total pulses to do one cycle. This would use 1.2 milliJoules (mJ) total over 40 cycles. Assuming the total cycle time is 10 seconds (s), then that is 1.2 mJ/10 s=0.12 mW. Accordingly, each of 6 heating elements may run at ˜1 mW.
The number of heating elements 110 along the microfluidic channel 130 are not to be confused with a heater incorporated into one of the inertial pumps 120. For example, inertial pumps 120 may fire in 1 microsecond. Consequently, the corresponding thermal effect on the fluid is quite small. By comparison, the heating elements 110 are used to control the temperature of the fluid and impact the fluid thermally by actuating for longer than 1 microsecond. With a thermal inkjet pump and other inertial pumps 120, fluid can be pumped through the microfluidic channel 130 at tens of mm/s with a travel time between spaced heating zones of less than 0.1 seconds. The space between heating zones should have just slightly more than the same diffusion time as the space across the channel.
As will be described below, the reaction device 100 may include multiple heating elements 110. The number of heating elements 110 correspond to heating zones to change the temperature of the fluid sample in the microfluidic channel 130. In many reactions of interest that a user may want to conduct on the fluid sample, the fluid sample may need to experience different temperatures. Accordingly, the number of heating elements 110 could, in some examples, be a single heating element 110 that operates at different temperatures at different times as needed to produce the desired reaction in the fluid sample. In other examples, the number of heating elements 110 may include multiple heating elements 110 disposed along the microfluidic channel 130, with the different heating elements 110 operating at different temperatures. In this example, the fluid sample is moved through the microfluidic channel 130 by the inertial pumps 120 to the heating element 110 with the temperature needed next for the reaction or test being conducted on the fluid sample.
In one example, the number of heating elements 110 may be three. In that example, each of the heating elements 110 may have a length of 50-100 microns along the microfluidic channel 130. This same distance may be provided between adjacent heating elements 110 and between heating elements 110 adjacent to one of the fluid reservoirs 240 and that fluid reservoir 240.
In this example, the heating elements 110 may each be a resistor or pair of resistors on opposite sides of the microfluidic channel 130. The heating element 130 on the left arm of the microfluidic channel may be held or operated at 50-60° C., which may represent an anneal temperature for a PCR operation. The heating element 10 at the center of the microfluidic channel 130 may be held or operated at 70-75° C., which may represent an extension temperature for the PCR operation. The heating element 110 on the right arm of the microfluidic channel 130 may be held or operated at 93-98° C., which may represent a denature temperature for the PCR operation. Note that these heating ranges are for a PCR example. However, any temperature ranges could be used depending on the reaction being conducted and the temperatures needed for that reaction. Each of the heating elements 110 may have a length of 50-100 microns along the microfluidic channel 130. The same distance may be provided between each heating element 110 edge adjacent to a corner of the U-shaped microfluidic channel 130 and that corner. This distance between each heating element 110 adjacent to the fluid reservoir 245 and the fluid reservoir 245 may be less than 200 microns.
In
This injector 460 is used to insert bubbles 462 of an immiscible fluid into the microfluidic channel 130 on either side of the fluid sample. The immiscible fluid can be a liquid or gas that is not reactive with the fluid sample. For example, the immiscible fluid could be air, some other gas, or oil. The injector 460 may include a nozzle to inject the immiscible fluid into the microfluidic channel 130. The injector 460 may be coupled to a reservoir that contains the immiscible fluid. Through operation of a pump, the immiscible fluid may be drawn from the reservoir, through a conduit to be injected into the microfluidic channel 130 from the nozzle.
In this way, as shown in
Specifically, the method 500 includes introducing 570 a fluid sample into a microfluidic channel 130. The fluid sample may be introduced via operation of the inertial pumps 120 to draw fluid from a fluid reservoir in fluid connection with the microfluidic channel 130. The fluid sample is then oscillated 572 in two directions within the microfluidic channel 130. For example, the inertial pumps 120 may be alternately activated. This alternate activation changes the direction of fluid flow through the microfluidic channel 130. For example, as described above in connection with
As the fluid passes through the microfluidic channel 130, the fluid sample is repeatedly heated 574 by the number of heating elements 110. This cyclic heating may, for example, effectuate the thermal cycling carried out during certain chemical operations, such as PCR.
Next, the method 600 of
The method 600 also includes heating 682 a third of the three heating elements 110 to an extension temperature that is between the denature and anneal temperatures of the PCR. During the extension phase, replicated DNA strands are extended by the polymerase in a PCR master mix. The fluid sample is then oscillated back and forth through the microfluidic channel 130 to repeatedly expose the fluid sample to the denature, anneal and extension temperatures as needed to cause the PCR.
In the example of
Lastly, all of the multiple heating elements 110 are heated 788 to the extension temperature such that replicated DNA strands are extended by the polymerase in a PCR master mix. This causes the extension phase of the PCR to occur in the fluid sample which may be heated by the multiple heating elements 110 for this phase.
In the example of
After the anneal phase of the PCR, the fluid sample is moved 896 so that the fluid sample covers multiple heating elements 110. All heating elements 110 then heat 898 the fluid sample to the extension temperature, e.g., 75° C. The fluid sample is then extended at the extension temperature. After the extension phase of PCR, the fluid sample is returned 899 back to the initial position. The cycle may then be repeated until the process is complete. In some examples, the cycle is repeated 15 to 30 times.
In this example, the fluid sample is stretched during cooling to the anneal temperature allowing rapid cooling due to the large surface area of the stretched sample. The heating to extension temperature may be performed over multiple heating elements 110 in a partially-stretched configuration. Finally, the heating to the denature temperature may be conducted in an unstretched configuration. This approach contrasts with the approach in
In the example of
After the annealing phase, the fluid slug is moved 856 to a mid-temperature heating element 110 activated to the extension temperature, e.g. 75° C. The fluid slug is held at the mid-temperature heating element 110 to allow extension to occur.
After the extension phase, the inertial pumps 120 return 896 the fluid slug to the initial position, e.g., adjacent to the first of the heating elements 110. The cycle can then be repeated a number of times, as needed, to cause the PCR to occur in the fluid sample. In this example, the immiscible bubbles 462 keep the fluid slug contained.
In
In this example, the microfluidic channel 130 may be filed with water. The pump 922 may be used to draw a specific amount of fluid sample, e.g., a DNA rich fluid, from the side channel 932 into the microfluidic channel 130. In this way, the pump 922 can meter the amount of fluid sample introduced into the microfluidic channel 130. The pump 922 may also remove the fluid sample from the microfluidic channel 130 when the reaction is completed. In such an example, the pump 922 may include selectively-actuatable opposite elements to pump fluid in opposing directions.
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In the description above, for purposes of explanation, specific details are set forth in order to provide a thorough understanding of the disclosure. It will be apparent, however, to one skilled in the art that examples consistent with the present disclosure may be practiced without these specific details. Reference in the specification to “an implementation,” “an example” or similar language means that a particular feature, structure, or characteristic described in connection with the implementation or example is included in at least that one implementation, but not necessarily in other implementations. The various instances of the phrase “in one implementation” or similar phrases in various places in the specification are not necessarily all referring to the same implementation.
The preceding description has been presented only to illustrate and describe examples of the principles described. This description is not intended to be exhaustive or to limit these principles to any precise form disclosed. Many modifications and variations are possible in light of the above teaching.
Filing Document | Filing Date | Country | Kind |
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PCT/US2020/056348 | 10/19/2020 | WO |