Dextranase enzyme, method for its production and DNA encoding the enzyme

FIELD OF THE INVENTION
This invention is in the field of genetic engineering and biotechnology and relates in particular to a method for the isolation and the expression in yeast of a gene coding for a dextranase.
BACKGROUND OF THE INVENTION
Dextranase (1,6-.alpha.-D-glucan 6-glucanohydrolase; EC 3.2.1.11) is an enzyme which hydrolyzes dextran. Dextran is a polymer of .alpha.-D glucopyranoses predominantly linked by 1,6 glycosidic bonds.
The initial interest in dextranase was its application in the commercial production of clinical dextran, used as blood substitute or extender (Tam, S. et al., 1976, Proc. Natl. Acad. Sci. USA. 73: 2128). Because of its ability to hydrolyze dextran, dextranase has also been found highly useful for hydrolyzing the dextran produced by the action of microorganisms causing dental caries or tooth decay. Thus, the incorporation of this enzyme into toothpaste or other oral detergent is considered in the art to provide a preventive or curative for tooth decay. See for example, the U.S. Pat. Nos. 3,991,177; 4,115,546; 4,140,758; 4,335,101; 4,438,093; 4,466,954; 4,469,673; 5,000,939; and 5,145,665.
In addition, dextranase is used in the sugar industry. Dextran is not a natural constituent of sugar juice, but it is formed by bacteria of the Leuconostoc species, which grow in damaged cane, and in juices that are delayed before processing through the evaporators. Dextran is a polymer which exhibits a high viscosity in solution. This increased viscosity becomes troublesome to both clarification and evaporation of juices and to the concentration of molasses when the level of dextran approaches 1000 parts per million of solid juices. Industrial dextranases are used to degrade the polymer to smaller molecules that do not create excessive viscosity. At a cane sugar refinery, dextran containing juice shows not only low filtration rate and poor crystallization of sucrose but also is the cause of serious quality problems of the final product.
Dextran is also formed occasionally in the processing of sugar beets, particularly when they have been exposed to freezing and thawing cycles during harvest and storage. The dextranase as described for cane sugar can be applied when this occurs.
The use of dextranase to hydrolyze dextran found in cane juices allows to increase the yield in sugar production (Imrie, F. K. E. et al., 1972, Sugar Technol. Rev. 1: 291-361; Fulcher, R. P. and Inkerman, P. A., 1976, Proc. Queensl. Soc. Sugar Cane Technol. 43: 295-305; Inkerman, P. A. and James, G., 1976, Proc. Queensl. Soc. Sugar Cane Technol. 43: 307-320; Inkerman, P. A. and Riddell, L., 1977, Proc. Queensl. Soc. Sugar Cane Technol. 44: 215-223; Inkerman, P. A., 1980, Proc. Int. Soc. Sugar Cane Technol. 17: 2411-2427; Barfoed, S. and Mollgaard, A., 1987, Zuckerindustrie (Berlin) 112(5): 391-395; Brown, C. F. and Inkerman, P. A., 1992, J. Agric. Food Chem. 40(2): 227-233).
Several microorganisms are capable of producing dextranase, among them fungi of the Penicillium, the Aspergillus, the Fusarium and the Chaetomium genera; Lactobacillus, Streptococcus and Flavobacterium bacteria, and yeasts such as the Lipomyces starkeyi, see for example, U.S. Pat. Nos. 2,742,399; 3,663,371; 3,875,009; 3,912,594; 4,732,854 and 4,820,640.
Commercial production of dextranase is by fermentation with either Penicillium sp. (Novo, 1977, Dextranase Novo 25L. A dextran decomposing enzyme for the sugar industry. Product data information 112-GB, Novo Enzyme Division, Hagsvaerd, Denmark) or Chaetomium sp. (Miles, 1986, Dextranex. Fungal dextranase for the sugar cane industry. Technical information L-1475, Miles Laboratories, Inc. Elkhart, Ind., USA). However, none of these fungi constitute an enzymatic source accepted by the U.S. Food and Drug Administration (FDA) (Koenig, D. W. and Day, D. F., 1989, Applied and Environmental Microbiology 55(8): 2079-2081).
Yeast, meanwhile, is a microorganism widely used in the food industry and most recently, in the production of pharmaceutical products. Yeast can also grow to a high cellular density in less time than fungi and it is therefore an appropriate host for industrial production of secreted proteins.
Only three groups have reported the cloning of genes coding for dextranases from different bacteria (Barrett, J. F. et al., 1987, Infection and Immunity 55(3): 792-802; Lawman, P. et al., 1991, Journal of Bacteriology 173(23): 7423-7428 and Okushima, M. et al., 1991, Jpn. J. Genet. 66: 173-187) and of these, only one nucleotide sequence has been published (Okushima, M. et al., 1991, Jpn. J. Genet. 66: 173-187). Neither reports about molecular cloning or sequencing of any fungal gene coding for dextranase nor works about the heterologous expression of dextranase in yeast have been published.
SUMMARY OF THE INVENTION
The novelty of this invention is the identification of the nucleotide sequence which codes for a dextranase of the fungus Penicillium minioluteum and its expression in the yeast Pichia pastoris to obtain high levels of this enzyme in secreted form. The enzyme produced in Pichia pastoris cells is characterized in that it has a higher thermal stability than the natural fungal enzyme from Penicillium minioluteum. The new recombinant strain can be used in the industrial production of dextranase. In view of sequencing data (Seq. Id. No. 1), this new nucleotide sequence coding for a fungal dextranase is not homologous to the nucleotide sequence which codes for bacterial dextranase reported by Okushima et al., 1991, Jpn. J. Genet. 66: 173-187.
The technical solution of this invention is related to the establishment of the nucleotide sequence of a cDNA copy of mRNA coding for a dextranase enzyme isolated from the Penicillium minioluteum fungus (Seq. Id. No. 1 and Seq. Id. No. 2). The dextranase cDNA was transferred to a Pichia pastoris expression vector and this recombinant plasmid was used to obtain yeast transformants capable of secreting high dextranase levels.

BRIEF DESCRIPTION OF THE DRAWINGS
FIG. 1 Construction of plasmid pPDEX1 for expression of dextranase cDNA from Penicillium minioluteum in Pichia pastoris.
FIG. 2 Double reciprocal representation of the Michaelis-Menten equation (Lineweaver-Burk modification) applied to the initial dextran depolymerization rate (IDR) values using natural and recombinant dextranase.
FIG. 3 Influence of the pH on the determination of enzymatic activity expressed as % relative activity with respect to the maximum value for natural and recombinant dextranase.
FIG. 4 pH stability of natural and recombinant dextranase expressed as % residual activity (100% activity at pH 4.5) after 30 min. incubation at 50.degree. C. at a given pH.
FIG. 5 Influence of the temperature on the determination of enzymatic activity expressed as % relative activity with respect to the maximum value for natural and recombinant dextranase.
FIG. 6 Thermal stability of natural and recombinant dextranase expressed as denaturing reaction rate from Arrhenius equation. Plotting of logk (k=denaturing rate constant) versus 1/T (T=temperature in Kelvin.times.10.sup.5).

DETAILED DISCLOSURE OF THE INVENTION
In a first aspect, the present invention provides an isolated and purified DNA having a nucleotide sequence which essentially corresponds to or hybridizes with a nucleotide sequence comprised in the dextranase gene, shown in Seq. Id. No. 1, of the fungus Penicillium minioluteum.
The words "a nucleotide sequence comprised in the dextranase gene" are intended to include several possibilities. One option is a DNA which covers the complete dextranase gene, i.e. the gene inclusive of regulatory and coding sequences. Another option is a DNA essentially consisting of the coding sequence, or a part of the coding sequence, and lacking the dextranase promoter region. One such possibility is a dextranase cDNA obtained by reverse transcription from dextranase mRNA. The invention also covers a DNA essentially consisting of the dextranase promoter and lacking the dextranase coding region. Furthermore, the invention relates to oligonucleotides of sufficient length to be specific for dextranase DNA or RNA. Such oligonucleotides may be useful as dextranase-specific probes or primers and will usually have a length of from about 7 or 8, preferably from about 9 or 10 nucleotides up to about 40 or 50 nucleotides, preferably to about 25 or 30 nucleotides, or above 50 nucleotides up to the complete length of the gene.
The words "a nucleotide sequence which essentially corresponds to or hybridizes with" are intended to include single stranded and double stranded DNA. In the case of single stranded DNA, both the corresponding and the complementary sequence are intended to be included by this wording.
The correspondence need not be 100%, i.e. DNA having a certain homology to the sequence shown in Seq. Id. No. 1 is intended to be included. DNA which has a homology of at least 60%, preferably a homology of at least 70% to said sequence is intended to be covered. It is especially intended to cover DNA having the same function and/or effect, even though the sequence differs from the one shown in Seq. Id. No. 1. Therefore, changes in the dextranase promoter region which do not affect the promoter function of said sequence are intended to be covered by this invention. Similarly, the invention is intended to include any changes in the dextranase coding region which either lead to the same amino acid sequence or to an amino acid sequence which, notwithstanding one or more deviations from the original amino acid sequence, maintains dextranase activity.
For example, the invention intends to cover not only the genomic DNA and cDNA which codes for the dextranase enzyme of the fungus Penicillium minioluteum but also DNA encoding related dextranase enzymes, such as DNA coding for the dextranase enzyme of related fungi, such as Penicillium funiculosum, Penicillium aculeatum and Penicillium pinophilum. Dextranase enzymes are considered to be related when they have a similar dextranase activity, and/or are recognized by the same anti-dextranase antibody, and/or are encoded by DNA having a homology of at least 60 or 70%.
According to a preferred embodiment of the invention, the DNA comprises a nucleotide sequence coding for an enzyme having dextranase activity. Preferably, said nucleotide sequence codes for the dextranase enzyme of the fungus Penicillium minioluteum. Said nucleotide sequence essentially codes for the amino acid sequence shown in Seq. Id. No. 2. More specifically, said nucleotide sequence essentially consists of the nucleotides #1226 to #2947 of Seq. Id. No. 1.
According to another preferred embodiment of the invention, said DNA comprises a nucleotide sequence from the promoter region of the dextranase gene of the fungus Penicillium minioluteum. More preferably, said nucleotide sequence essentially consists of nucleotides within the region of the nucleotides #1 to #1079 of Seq. Id. No.1.
A further aspect of the present invention provides a recombinant polynucleotide comprising a DNA as defined above (a dextranase-specific DNA) and a nucleotide sequence of a cloning or expression vector, wherein said polynucleotide is able to direct the expression of a protein in a suitable host. Preferably, said recombinant polynucleotide is able to direct expression of a protein with dextranase activity in a suitable host, said host preferably being a yeast, especially the yeast Pichia pastoris. A particularly preferred example of a recombinant polynucleotide able to direct expression of a dextranase enzyme in yeast such as Pichia pastoris is the plasmid pPDEX1.
A further aspect of this invention is a host cell transformed with a recombinant polynucleotide as defined above. Preferably, said host cell is a yeast, especially the yeast Pichia pastoris. A particularly preferred example of such a host cell is Pichia pastoris strain MPDEX1.
An important further aspect of this invention is a proteinaceous substance having dextranase activity, said substance comprising a polypeptide having essentially an amino acid sequence as shown in Seq. Id. No. 2, or a fragment of the same. By the use herein of the term "essentially" it is intended to cover all proteinaceous substances having a homology of at least 60%, and preferably at least 70%, to said Seq. Id. No. 2. In a particularly preferred embodiment of the present invention, the proteinaceous substance with dextranase activity has an optimum temperature for the enzymatic activity in a range between 55.degree. and 60.degree. C. as well as an N-glycosylation percentage between 13 and 15% and a half-life time of about 7.6 hours at 50.degree. C.
The invention covers the enzyme irrespective of how it has been produced, for example by recombinant DNA/genetic engineering technology, chemical synthesis, enzymatic degradation, or a combination thereof. Further, the invention not only covers the enzyme as such, but also in the form of fusion proteins having dextranase activity.
Another aspect of this invention is a method for producing a proteinaceous substance having dextranase activity, comprising expression in yeast of a DNA as defined herein which codes for a dextranase enzyme. Preferably, said expression is in the yeast Pichia pastoris. This invention includes a method as defined herein, wherein the dextranase enzyme produced is isolated from the growth medium.
The invention also provides a method for hydrolyzing dextran comprising contacting dextran under suitable dextran depolymerization conditions with a dextranase enzyme or with cells producing a dextranase enzyme and optionally recovering the dextran depolymerization products produced, wherein said dextranase enzyme is a proteinaceous substance as defined herein or a proteinaceous substance obtained by a method as defined herein.
Strain Deposits
The plasmid pPS7 was deposited on 22 August 1994 under the provisions of the Budapest Treaty with the Belgian Coordinated Collections of Microorganisms (BCCM-LMBP-Collection) and received accession number LMBP3116.
The strains Penicillium minioluteum Dierckx (HI-4) and Pichia pastoris MP36 were deposited on 22 August 1994 under the provisions of the Budapest Treaty with the Mycotheque de l'Universite Catholique de Louvain (MUCL), Belgium, and received accession numbers MUCL 38929 and MUCL 38930, respectively.
EXAMPLES
These examples intend to illustrate the invention, but not to limit the scope of this invention.
Example 1: Dextranase Induction Kinetics; in Vitro Translation of the mRNA and Immunoprecipitation of the Translation Products
The dextranase induction kinetics of a Penicillium minioluteum fungus were performed in a 5 l fermenter B. E. Marubishi (Tokyo, Japan) with 3.5 l effective capacity containing medium composed of 0.7% NaNO.sub.3 ; 0.07% MgSO.sub.4 .multidot.7H.sub.2 O; 0.35% KH.sub.2 PO.sub.4 ; 0.002% yeast extract and 2% native dextran obtained from a Leuconostoc mesenteroides culture (Raices, M. et al., 1991, Biotecnologia Aplicada 8(2): 248-255).
Dextranase induction studies for other microorganisms have shown the absence of enzymatic activity in cultures containing glucose as carbon source (Fukumoto, J. et al., 1971, J. Biochem. 69: 1113-1121; Simonson, L. G. et al., 1975, Mycology 67: 845-851; Madhu, M. et al., Enzyme Microb. Technol. 6: 217-220). To analyze the effect of glucose on the enzyme induction in this fungus, a culture was prepared, adding 2% glucose instead of dextran.
The fermenters were inoculated with mycelium washed with 0.9% NaCl and the fermentation was carried out for 100 hours while maintaining the temperature at 28.degree. C., the pH at 5.5, the stirring speed at 300 rpm and the aeration rate at 1 vvm (volumes per min.). The dextranase activity was determined according to Kosaric et al. (1973, Biotech. Bioeng. XV: 729-741). One unit (1 U) of dextranase is defined as the amount of enzyme that liberates 1 .mu.mole of glucose equivalents in one minute from T-2000 dextran (Pharmacia) at pH 5.degree. and 40.degree. C. The reducing sugars were determined colorimetrically with dinitrosalicylic acid reagent (DNSA method), (Miller, G. L., 1959, Anal. Chem. 31: 426-428).
The dextranase enzymatic activity in the dextran-culture was detected after 40 hours of fermentation, following an increase in this activity until a value of 380 U/ml of culture. Meanwhile the culture grown in glucose did not show dextranase activity. The presence of the enzyme was also observed through electrophoresis in 12.5% polyacrylamide gel (PAGE) with 1% blue-dextran (Pharmacia) and by Western blotting (Towbin, H. et al., 1979, Proc. Natl. Acad. Sci. U.S.A. 76: 4350-4354; Maniatis, T. et al., 1989, Molecular Cloning, CSH, N.Y., USA) using a polyclonal antibody prepared in a rabbit immunized against purified dextranase from the fungus Penicillium minioluteum (Raices, M. et al., 1991, Biotecnologia Aplicada 8(2): 248-255). Both methods corroborated the presence of the enzyme only in the dextran induced culture after 40 hours of the fermentation.
The fungus mycelium grown in dextran or glucose mediums as carbon sources was collected through centrifugation at different fermentation times (48, 56 and 72 hours) and the total cellular RNA was isolated using the guanidinium thiocyanate extraction method described by Chirgwin et al. (1979, Biochem. 18: 5294-5299). The Poly (A).sup.+ fraction was purified by chromatography through an oligo (dT) cellulose column (Sigma Chemical Company, USA) according to the method of Avid and Leder (1972, Proc. Natl. Acad. Sci. USA 69: 1408-1412) and the different fractions were translated in vitro in rabbit reticulocyte lysates (Rabbit reticulocyte lysate, nuclease treated, Promega) using .sup.35 S-methionine (Ahersham). The translation products were immunoprecipitated as described by Dobberstein et al. (1979, Cell 17: 759-769) with antidextranase immunoserum and the immunoprecipitates were analyzed by SDS-polyacrylamide gel electrophoresis.
The in vitro translation of the Poly (A).sup.+ RNAs isolated from the culture grown in dextran showed two polypeptides of similar molecular weight that were immunoprecipitated by the anti-dextranase polyclonal antibody. These polypeptides are abundant in the mRNA population isolated at 56 hours and their molecular weight is slightly lower than that of the natural purified dextranase from Penicillium minioluteum (67 kDa). The mRNA isolated from the culture grown in glucose did not lead to the synthesis of polypeptides that were immunoprecipitated by the antidextranase antibody.
Example 2: Isolation of cDNA Coding for Penicillium minioluteum Dextranase
Based on the in vitro translation and immunoprecipitation results, 5 .mu.g of Poly (A).sup.+ RNA of the 56 hour culture growth were used to synthesize cDNA using the Stratagene cDNA synthesis kit (Huse, W. D. et al., 1988, Strategies 1: 1-3). This cDNA was then ligated to the EcoRI-XhoI digested pBluescript II SK (Short, J. M. et al., 1988, Nucleic Acids Research 16: 7583) and the ligation product was transformed into E. coli strain MC1061 (Meissner, P. S. et al., 1987, Proc. Natl. Acad. Sci. U.S.A. 84: 4171), thus constructing a cDNA library from the dextran-induced culture.
The cDNA clones corresponding to genes differentially regulated in the induced culture (grown in dextran) in relation to the non-induced culture (grown in glucose) were isolated by differential screening (plus-minus) as described by Maniatis et al. (1989, Molecular Cloning, CSH, N.Y., U.S.A.). Two cDNA probes labeled with .sup.32 P were synthesized from 1 .mu.g of the Poly (A).sup.+ RNAs at 56 hours of the induced and non-induced cultures using [.alpha.-.sup.32 P] dATP (Amersham). The radiolabeled probes were hybridized separately to duplicate copies of the same cDNA library. Those clones were selected that hybridize to only the cDNA probe from the induced culture. Crossed hybridization among the clones enabled identification of four different nonhomologous groups which are represented in the library at 2.1%, 1.3%, 0.4% and 0.25%. The Northern blotting analysis (Maniatis, T. et al., 1989, Molecular Cloning, CSH, N.Y., U.S.A.) of the induced and non-induced Poly (A).sup.+ RNAs using as a probe one cDNA fragment from each group of clones confirmed that these cDNA fragments correspond to genes that are expressed differentially in these cell cultures (induced and non-induced), since each probe hybridized only to the Poly (A).sup.+ RNA from dextran-induced culture.
In order to identify the dextranase cDNA clone, the T7 RNA polymerase-promoter expression system developed by Studier and Moffat (1986, J. Mol. Biol. 189: 113) was used. For this purpose a cDNA fragment selected for each of the four groups of clones was subcloned into pET-3a, pET-3b and pET-3c vectors, resp. (Studier, F. W. et al., 1990, Methods Enzymology 185; Maniatis, T. et al., 1989, Molecular Cloning, CSH, N.Y., U.S.A.). These vectors were previously cleaved with BamHI and the ends were filled in with the Klenow fragment and treated with alkaline phosphatase (Boehringer Mannheim).
The pET-3a, pET-3b, and pET-3c vectors ligated to cDNA inserts were transformed into E. coli strain BL21(DE3) pLysS by selection for resistance to ampicillin and chloramphenicol. BL21(DE3) pLysS is a lysogen bearing the bacteriophage T7 polymerase gene under the control of the lacUV5 promoter and also carries the pLysS plasmid which confers resistance to chloramphenicol and produces T7 lysozyme, increasing the host tolerance for toxic target plasmids (Moffat, B. A. et al., 1987, Cell 49: 221-227; Inouye et al., 1973, J. Biol. Chem. 248: 7247; Studier, F. W. et al., 1990, Methods Enzymology 185).
The cDNA fragments joined to the beginning of the gene10 of T7 bacteriophage were expressed in BL21(DE3) pLysS as fusion proteins after inducing the system with IPTG (isopropylthio-.beta.-D galactoside) at a 1 mM final concentration. The Western blotting analysis evidenced a protein that was recognized by the anti-dextranase polyclonal antibody, being this protein produced by a transformant containing the pETDEX plasmid that was constructed by subcloning the HincII cDNA fragment from pBCDEX plasmid into pET-3a vector. This result shows that the pBCDEX plasmid contains a cDNA which codes for the Penicillium minioluteum dextranase and this cDNA corresponds to the group of clones most represented in the library (2.1%).
The dextranase cDNA nucleotide sequence contains four ATG's located in the 5' region of this sequence (see Seq. Id. No. 1) representing possible translation start sites, since the reading frame they originate coincides with the one determined by the pETDEX plasmid sequence (Sanger, F. et al., 1977, Proc. Natl. Acad. Sci. U.S.A. 74: 5463-5467) with which the dextranase protein expression was obtained in E. coli.
The N-terminal region of dextranase secreted to the medium by Penicillium minioluteum was subjected to the Edman degradation method (Edman, P., 1950, Acta Chem. Scand. 4: 283-293). A fraction of this purified protein (Raices, M. et al., 1991, Biotecnologia Aplicada 8(2): 248-255) was applied to a PVDF (polyvinylidene difluoride, Millipore) filter previously activated with methanol. The Edman degradation was carried out according Silva et al. (European Patent Application 0 474 313 A2) using the Knauer's Automatic Sequencer, model 810, connected to an HPLC (High Performance Liquid Chromatography) system, so as to detect the phenylthiohydantoin derivatives of the amino acids (PTH-amino acids). This technique elucidated the N-terminal sequence of the molecule to be: Met Gly Thr Thr Asn Asn Thr His Cys Gly Ala Asp Phe Cys Thr Trp (Seq. Id. No. 3).
This sequence matches with the sequence of the first 16 amino acids translated from the fourth ATG identified in the dextranase cDNA nucleotide sequence (Seq. Id. No. 1 and Seq. Id. No.2). When the amino acid sequence translated from the cDNA sequence between the first or second ATG to the fourth ATG (Seq. Id. No. 1) was analyzed, the following common characteristics for signal peptides can be noted: the amino-terminal region is followed by a larger highly hydrophobic region which could have an .alpha.-helix conformation, it being flanked at its carboxyl terminus by a slightly hydrophilic region.
Example 3: Molecular Cloning of Dextranase Genomic DNA
Chromosomal DNA from Penicillium minioluteum was isolated using the method described by Raeder and Broda (1985, Lett. Appl. Microb. 1: 17-20) and analyzed by Southern blotting. The genomic DNA was digested with BamHI and hybridized to a probe containing a dextranase cDNA sequence. The analysis showed only one band of about 9 kb and this result was used as a basis for constructing a genomic library in E. coli.
The chromosomal DNA digested with BamHI was fractionated by sedimentation through a 10-40% sucrose gradient according to Maniatis et al. (1989, Molecular Cloning, CSH, N.Y., U.S.A.). DNA fragments of an appropriate size (over 6 kb) were ligated to pUC19 (Yanisch-Perron, C. et al., 1985, Gene 33: 103-119) vector (previously cleaved with BamHI and treated with phosphatase) and transformed into E. coli strain MC1061 (Meissner, P. S. et al., 1987, Proc. Natl. Acad. Sci. U.S.A. 84: 4171).
The genomic clone was identified in this library by hybridization with the dextranase cDNA probe. The isolated recombinant plasmid was digested with BamHI, showing that the size of the genomic insert (9 kb) corresponds to the size obtained previously by Southern blotting analysis of chromosomal DNA.
A fragment of 3629 bp contained in the genomic BamHI insert which includes the dextranase gene was sequenced (Seq. Id. No. 1) using the method described by Sanger et al. (1977, Proc. Natl. Acad. Sci. U.S.A. 74: 5463-5467). From the comparison of the cDNA and genomic sequences we arrived to the conclusion that the Penicillium minioluteum dextranase gene does not include introns in its nucleotide sequence.
Example 4: Homology among Dextranase Genes of different Fungi which produce this Enzyme
To examine the existing homology between the dextranase gene of Penicillium minioluteum and analogous genes of other dextranase producing fungi, the following fungi strains from the IMI (International Mycological Institute) collection were used:
1. Paecilomyces lilacinus (IMI 027 830);
2. Penicillium funiculosum (IMI 040 235);
3. Penicillium aculeatum (IMI 040 588);
4. Penicillium pinophilum (IMI 087 160);
5. Penicillium verruculosum (IMI 079 196).
These strains were grown in a rice medium (rice grains washed and sterilized for 15 min. at 121.degree. C.) to induce sporulation and the spores were used as inoculum to develop biomass in liquid YPD (1% yeast extract, 2% peptone and 2% glucose) medium, pH 5 at 23.degree. C. for 48 hours. The biomass collected was used to isolate chromosomal DNA as described by Raeder and Broda (1985, Lett. Appl. Microb. 1: 17-20). The chromosomal DNA isolated from each strain was analyzed by Southern blotting according to Maniatis et al. (1989, Molecular Cloning, CSH, N.Y., U.S.A.). Genomic DNAs were digested with BamHI and hybridized to a probe containing the dextranase cDNA sequence from the Penicillium minioluteum fungus. The hybridization bands observed as a result of Southern blotting demonstrate that there is a high homology between the dextranase genes of the Penicillium funiculosum (IMI 040 235), the Penicillium aculeatum (IMI 040 588), the Penicillium pinophilum (IMI 087 160) and the isolated Penicillium minioluteum dextranase gene. However no hybridization signals were observed for chromosomal DNAs corresponding to Paecilomyces lilacinus (IMI 027 830) and Penicillium verruculosum (IMI 079 196) fungi.
In order to assess whether the dextranases produced by these fungi are recognized by the polyclonal antibody obtained against dextranase protein purified from Penicillium minioluteum (Example 1), a total of 10.sup.6 spores were used as inoculum for 200 ml of a liquid medium solution composed of 0.7% NaNO.sub.3 ; 0.07% MgSO.sub.4 .multidot.7H.sub.2 O; 0.35% KH.sub.2 PO.sub.4 ; 0.002% yeast extract and 2% native dextran obtained from a Leuconostoc mesenteroides culture (Raices, M. et al., 1991, Biotecnologia Aplicada 8(2): 248-255). Cultures were incubated for 100 hours at 26.degree. C. and the dextranase activity was detected in the culture supernatant fluids.
To recover the dextranase enzyme, the supernatants were concentrated and salted out. For this purpose the supernatants were freeze-dried and resuspended in 10 ml of distilled water to carry out a dialysis in distilled water. Subsequently the samples were freeze-dried, resuspended in 1 ml of distilled water and salted out on a P2 column (Biorad, U.S.A.).
The Western blotting analysis of the samples corresponding to Penicillium funiculosum (IMI 040 235), Penicillium aculeatum (IMI 040 588) and Penicillium pinophilum (IMI 087 160) evidenced protein bands of similar molecular weight (67 kDa) recognized by the antidextranase polyclonal antibody obtained against the Penicillium minioluteum dextranase protein. Consequently the dextranase enzymes that were recognized by the antidextranase antibody are produced by the same fungi that evidenced DNA homology with the Penicillium minioluteum dextranase gene.
Example 5: Expression of cDNA coding for Penicillium minioluteum Dextranase in Pichia pastoris
The cDNA coding for dextranase was amplified from the pBCDEX plasmid by PCR (Polymerase Chain Reaction). The amplified fragment starting from the fourth ATG (corresponding to the N-terminus of the dextranase secreted by Penicillium minioluteum fungus; see example 2) was inserted into pPS7 vector being fused to the SUC2 gene signal sequence from Saccharomyces cerevisiae to be expressed in the methylotrophic yeast Pichia pastoris under the control of the methanol-controlled alcohol oxidase (AOX1) promoter used for the expression of foreign proteins in this host (European Patent Application 438 200 A1).
The pPS7 plasmid (FIG. 1) is a Pichia pastoris integrating vector designed for the heterologous gene expression in this host. This plasmid is a derivative from pUC18 (Yanisch-Perron, C. et al., 1985, Gene 33: 103-119) that can replicate in E. coli and carries the ampicillin resistance gene. In addition, this vector also contains a 1.15 kb fragment (PAOX1) of the methanol-controlled alcohol oxidase promoter followed by the SUC2 gene signal sequence (sp SUC2) from Saccharomyces cerevisiae, the transcription terminator sequence (GAPt) of the glyceraldehyde-3-phosphate dehydrogenase gene from Saccharomyces cerevisiae, the Saccharomyces cerevisiae HIS3 gene, and the 3' region (2.1 kb) of the AOX1 gene (3'AOX1). This vector was cleaved with NcoI, made blunt ended with Mung Bean nuclease and treated with alkaline phosphatase (Boehringer Mannheim) according to Maniatis et al. (1989, Molecular Cloning, CSH, N.Y., U.S.A.).
Two oligonucleotides primers: DX1: 5'-ATGGGCACTACGAATAATACCCAT (Seq. Id. No. 4) and DX5: 5'-GGAAACCTGGAAATGTCCTTAT (Seq. Id. No. 5) were used to isolate the dextranase cDNA by PCR from pBCDEX plasmid according to Saiki et al. (1988, Science 239: 487-491). The isolated fragment was phosphorylated using T4-polynucleotide kinase and subcloned into the pPS7 vector (FIG. 1).
The plasmid pPDEX1 (FIG. 1) constructed by subcloning the dextranase cDNA into the pPS7 vector was digested with PvuII and transformed into the Pichia pastoris mutant strain MP36 (his3.sup.-) using the electroporation method described by Meilhoc et al. (1990, Bio/Technology 8: 223-227). Transformants were selected for their ability to grow on G medium (Galzy, P. and Slonimski, P. P., 1975, C. R. Acad. Sci. Paris 245: 2423-2427) containing 2% glucose (histidine-deficient medium) by complementation of the mutation his3.sup.- in Pichia pastoris with the HIS3 gene from Saccharomyces cerevisiae (Yong, V. et al., 1992, Biotecnologia Aplicada 9: 55-61). The grown colonies were transferred to a plate containing G medium and 0.4% blue-dextran (Pharmacia) and the dextranase expression was induced with methanol vapor. Few hours after induction, the transformants formed halos of dextran hydrolysis.
The dextranase expression was studied in shake flasks with 15 transformants which evidenced activity in blue-dextran plates. Cells grown for 22 hours at 30.degree. C. in 50 ml of G medium containing 2% (v/v) glycerol were centrifuged, washed and resuspended in the same medium containing 1% (v/v) methanol instead of glycerol for further incubation. During growth, 0.5% (v/v) methanol was added every 12 hours for a total of 100 hours.
The dextranase activity in the culture supernatant samples was determined as described previously in the example 1. All the transformants showed a progressive increase in the activity of the culture supernatant after methanol induction. The MPDEX1 transformant yielded 100 U/ml of dextranase activity in the culture supernatant and was selected for further dextranase expression studies. The chromosomal DNA isolated from the MPDEX1 strain and digested with EcoRI was analyzed by Southern blotting. The analysis clearly shows that the transforming DNA disrupted the AOX1 locus by double crossover recombination.
The dextranase expression in the MPDEX1 strain was studied also in a 5 l laboratory-scale fermenter (3.5 l working volume) B. E. Marubishi (Tokyo, Japan) containing industrial medium (0.13% (NH.sub.4).sub.2 HPO.sub.4, 0.09% (NH.sub.4).sub.2 SO.sub.4, 0.05% urea and molasses which yield 4% total reducing sugars). The fermenter was inoculated to OD.sub.530 =C.2 and when the OD.sub.530 reached a value of 60, the culture was induced with methanol. The methanol feed rate was gradually increased to 3.5 g/h per liter of culture during 120 hours of growth. During the fermentation process the stirring speed was increased from 350 rpm to 750 rpm, maintaining the temperature at 30.degree. C., the pH at 5.2 and the aeration rate at 1 vvm (volumes per min.).
The dextranase activity in the culture supernatant increased progressively after methanol induction, reaching 2500 U/ml (2.6 grams of dextranase secreted to the growth medium per liter of culture). After subjecting the cells to mechanical lysis with glass beads according to Maniatis et al. (1989, Molecular Cloning, CSH, N.Y., U.S.A.), it was noted that the amount of dextranase secreted to the growth medium was 85% of the total amount produced by the cells. Consequently the secretion of dextranase to the growth medium is efficient in this host. These results show that the level of dextranase secreted to the growth medium by this recombinant yeast (2500 U/ml; 2.6 g/l) is significantly greater than the level secreted by the Penicillium minioluteum fungus (380 U/ml; 0.4 g/l) in approximately the same time of fermentation at a 3.5 l scale.
The upscaling process was performed in a 300 l fermenter (200 l working volume) B. E. Marubishi (Tokyo, Japan) containing industrial medium. The fermenter was inoculated to OD.sub.530 =0.2 and when the OD.sub.530 reached a value of 70, the culture was induced with methanol. The methanol feed rate was gradually increased to 3.5 g/h per liter of culture during 80 hours of growth. During the fermentation process the stirring speed was increased from 350 rpm to 750 rpm, maintaining the temperature at 30.degree. C., the pH at 5.2, the dissolved O.sub.2 at 20% and the aeration rate at 1 vvm. After induction with methanol, in this upscaling process the extracellular dextranase activity increased up to 2700 U/ml (2.8 g/l) in 100 hours of fermentation.
Example 6: Structural Characterization of Recombinant Dextranase expressed in Pichia pastoris and its comparison with Natural Dextranase from the Penicillium minioluteum Fungus
The recombinant enzyme was purified from the fermentation culture supernatant (example 5) by consecutive centrifugations at 8000 rpm for 15 min. before and after heating for 1 hour at 50.degree. C. The supernatant was dialyzed against 10 mM ammonium acetate (pH 5) buffer and applied to an FFQ (125.times.18 mm) anion exchange column (Pharmacia) equilibrated with the same buffer. The protein was eluted with a linear gradient of 10 to 750 mM ammonium acetate (pH 5) at 1 ml/min. flow rate. The obtained chromatogram showed a non retained fraction and a major peak which eluted at 50 min. retention time, after applying the gradient. The major peak was the only one which showed dextranase activity and a single band in SDS polyacrylamide gel electrophoresis (PAGE-SDS), and in Western blotting using rabbit antidextranase antibody (example 1) or recognition with a specific lectin for mannosylation, Concanavalin A: Horse radish peroxidase (Con A: HRP). Both electrophoresis and Western Blotting showed a double band for the natural product as was reported by Raices et al. (1991, Biotecnologia Aplicada 8(2): 248-255) while the recombinant product shows only a single band similar to the heavier one observed in natural dextranase. It was also determined that the recombinant enzyme maintains the same specific activity as the natural enzyme in the range of 950-1000 U/mg protein.
According to the determination of total carbohydrates by the phenol-sulphuric acid method (Dubois, M. et al., 1956, Anal. Chem. 28: 350), it was estimated that the glycosylation percentage of the natural enzyme was 4-5%, while 13-15% for the recombinant enzyme (approximately 3 times higher). The glycosylation detected was mainly N-linked with oligomannoside structures as showed the identification assays with Con A : HRP and also deglycosylation with PNGase F (Boehringer Mannheim). These assays also showed that there are only a few N-glycosylation sites because the difference in size was small between the native enzyme and the deglycosylated one when treated with Endo H and PNGase F, which coincides with the results inferred from the amino acid sequence of the protein (Seq. Id. No. 2) deduced from the nucleotide sequence, where only three N-glycosylation sites were located. Furthermore, by means of a DIG glycan differentiation kit (Boehringer Mannheim) it was demonstrated that there is not any O-glycosylation.
The N-terminal sequences of both natural and recombinant dextranase were identical according to Edman's automatic degradation (example 2). Comparison of peptide maps of both proteins digested with trypsine (Boehringer Mannheim) at an enzyme : substrate ratio of 1:100 (p/p) in 100 hum phosphate buffer (pH 8), at 37.degree. C. for 4 hours and fractionated in a C4 reverse phase HPLC column (4.6.times.250 mm) with a linear gradient of 1 to 60% acetonitrile with 0.05% TFA for 120 min., showed that in both cases the principal fragments had the same retention time and a very similar general elution profile. Some fragments were selected from the recombinant enzyme chromatogram and sequenced by Mass Spectrometry using Xenon Fast Atom Bombardment as ionization source (FAB/MS). Some peptides were submitted to "linked scan" (simultaneous electric and magnetic field scanning) for sequencing according Gonzalez et al. (1992, Analytical Biochemistry 205: 151-158). Peptide sequences corresponded with fragments of the dextranase gene translated sequence (Sec. Id. No. 2).
Example 7: Biochemical Characterization of Recombinant Dextranase and its comparison with the Natural Enzyme of Penicillium minioluteum Fungus
a) Km and Vmax Determinations
Dextran T-2000 (Pharmacia) depolymerization kinetics were performed at 25.degree. C. at a constant enzyme concentration of 0.1276 U per ml, with the substrate concentration varying from 0.8 to 3.5 mg/ml. The remaining dextran concentration was determined by the Nicholson-Horsley turbidity test (1959, J. Agr. Food Chem. 7: 640-643). The initial depolymerization rates (IDR, in mg dextran per ml per min.) were calculated by adjusting the reaction rate to a first order reaction for substrate concentrations from 0.8 to 2.6 mg/ml and to a zero order for substrate concentrations greater than 2.6 mg/ml.
The Lineweaver-Burk modification of Michaelis-Menten's equation was applied to the former data (FIG. 2) to estimate Km and Vmax values, both for natural and recombinant enzymes. It was evidenced that these kinetic parameters were the same for both enzymes as it is shown in Table 1.
TABLE 1______________________________________Comparison of kinetic parameters Km and Vmax fornatural (Penicillium minioluteum) and recombinant dextranase(MPDEX1).Enzyme Km (mg/ml) Vmax (mg/ml.min.)______________________________________Natural 2.05 0.161Recombinant 2.12 0.153______________________________________
b) Influence of pH on Enzymatic Activity; Stability at Different pH
Relative activity values (expressed as % maximum activity) were measured at different pH values from 2 to 9. The optimum pH value for the activity was estimated as 5. It was similar for both natural and recombinant enzymes (FIG. 3)
An increase of stability (measured as % residual activity after incubating the enzyme at 50.degree. C. during 30 min.) of the recombinant enzyme in relation to the natural enzyme in the pH range between 5.5 and 7 was observed (FIG. 4). Besides that, the stability of both enzymes was markedly affected at pH below 3.5.
c) Influence of Temperature on Enzymatic Activity; Stability at Different Temperatures
Relative activities of both enzymes were measured at different temperatures (FIG. 5). Both natural and recombinant enzymes are sensitive to temperature changes; the first showed optimum activity at 30.degree.-40.degree. C. and the second at 55.degree.-60.degree. C. A temperature variation of +/--10.degree. C. implied a 20-40% decrease in maximum activity for both natural and recombinant enzymes.
The thermal stability of the enzyme was determined varying the temperature and measuring the residual activity at different incubation times. The enzyme denaturing reaction corresponded to first order kinetics:
log(% Act.)=k*t+2 (1),
wherein
%Act.=% of enzyme residual activity.
k=denaturing reaction rate constant.
t=time.
After plotting log(k) against 1/T expressed in Kelvin (according to Arrhenius' equation, FIG. 6) and considering equation (1), the half-life time (t.sub.1/2) was estimated at different temperatures, as the time when the enzyme loses 50% of its initial activity. The results attained at 30.degree. and 50.degree. C. are presented in Table 2.
TABLE 2______________________________________Comparison of the calculated half-life time (t.sub.1/2) fornatural and recombinant enzymes.Temperature Half-life time (t.sub.1/2)(.degree.C.) Natural dextranase Recombinant dextranase______________________________________30 5 months 11 years50 42 minutes 7.6 hours______________________________________
The fact that the recombinant enzyme has higher thermal stability and higher stability towards pH at the range between 5.5 and 7 than the natural enzyme and also an optimum temperature activity at 55.degree.-60.degree. C., represents an advantage for its use in the sugar industry.
TABLE 3__________________________________________________________________________Sequenced fragment from a genomic cone containing the dextranase gene ofthe fungus Penicillium minioluteum. Thecloned cDNA started at nucleotide #1080 and ended at nucleotide #3187.The four ATG's located in the 5' region of the cDNAsequence started at nucleotides #1124, #1133, #1190 and #1226,respectively. Amino acid sequence of the secreted dextranaseenzyme deduced from the dextranase cDNA sequence of the fungusPenicillium minioluteum. The underlined sequences correspond topeptide sequences from recombinant dextranse prouduced by MPDEX1__________________________________________________________________________strain.GGCATAGTAA TCCCGACAGC CGAGTATGAT GGAGCTTCTT CGGATAATGA 50TAGCGCCACC AGACCTTGCT TGAGCTGGAG AGCTAAAACA TTAAACGCCA 100CACGACCAAC ACTCTCATTA GTTGCGATAG ATGATGCTCG GAGCTGTTGA 150AACTCAGAAA TTCCTTCTAT GCGGGGTCTC CAAGATCGAT CCTGGGGGAT 200GTGAATACTA CGGTGGACCT AATTGACGCC TTGACAGGTG ATGTTAAGCG 250AACCAAGGAA GAATAATCTG GGGCTAGATG AAGATGTTGA GCTGTAAGGT 300ACGGTACGTT CCTATTGGCT TTATCGGAGC TTCTCCGGGT TACTCAGTCT 350TTCCGGGAGC ATGATCATTT TTGTATTGTC CAATAGTAAG CAGAAACTGA 400GAGCCACCAC AAACTCAAAA CCTCGGTAGC GAAGTTTCCC GGAACCAGTC 450AGGATTCTCA GAAACTGTGC TCGTGTTGCG GGGAATCCGC ATTCTACGTC 500GTCTGGAGCA AGGAAATGTT CGTGCTGGAT TGAGGAGGAT AGGTAGGTTG 550GAGAATCTCT TCAGCTAACC AATCTATAAG CATGCTCCGG TAACCTTTAG 600AGTTTCACAT TCAACGTAAT TTCCAAGATA GCCAGAGCGT CCTTGAATTA 650CTATGTAGAA ATCCTAAAAT TTCCCCTGTA AAATGCAAGT CAACGAGATG 700CGTGCCCTCA ATGTCTCTCG GCGCTACCCC GGAAATGATG CATAAGGCCA 750AGAATGTCAC CCGGTAACTT TTTCTTCAGA ATATCCTAAG ATTTCCATCA 800AACACAGTCG AATAGGTCAA TGCTCGCGAG AGACTTTCTG CCTTCACTCT 850ACGTCCTACT CATAGAAGTT CAACGGCTCA ATTCCGGGGT AATCTAGAGT 900TTGGACCTCA AGGGAGATGT TGCAACAAAT TGTACTAGAA CGATGCGCTT 950GCTTTCCAAT ACAGTAGTTG ACTTCATATA GCTTCCAACA AAAGGGATGG 1000GGATGAAGGC TCTATAGCGA GAAGTCTATA AGAAAGTGTC CTCATACCTG 1050TATCTCTCAG TCGTTCGAGA ACAATCCCGG AAACTATCTT ATCTTGCGAG 1100AAAGAAGACA ATATCTCAAA CTTATGGCCA CAATGCTAAA GCTACTTGCG 1150TTGACCCTTG CAATTAGCGA GTCCGCCATT GGAGCAGTCA TGCACCCACC 1200TGGCAATTCT CATCCCGGTA CCCAT ATG GGC ACT ACG AAT AAT ACC 1246 Met Gly Thr Thr Asn Asn Thr 1 5CAT TGC GGC GCC GAT TTC TGT ACC TGG TGG CAT GAT TCA GGG 1288His Cys Gly Ala Asp Phe Cys Thr Try Trp His Asp Ser Gly 10 15 20GAG ATC AAT ACG CAG ACA CCT GTC CAA CCA GGG AAC GTG CGC 1330Glu Ile Asn Thr Gln Thr Pro Val Gln Pro Gly Asn Val Arg 25 30 35CAA TCT CAC AAG TAT TCC GTG CAA GTG AGC CTA GCT GGT ACA 1372Gln Ser His Lys Tyr Ser Val Gln Val Ser Leu Ala Gly Thr 40 45AAC AAT TTT CAT GAC TCC TTT GTA TAT GAA TCG ATC CCC CGG 1414Asn Asn Phe His Asp Ser Phe Val Tyr Glu Ser Ile Pro Arg 50 55 60AAC GGA AAT GGT CGC ATC TAT GCT CCC ACC GAT CCA CCC AAC 1456Asn Gly Asn Gly Arg Ile Tyr Ala Pro Thr Asp Pro Pro Asn 65 70 75AGC AAC ACA CTA GAT TCA AGT GTG GAT GAT GGA ATC TCG ATT 1498Ser Asn Thr Leu Asy Ser Ser Val Asp Asp Gly Ile Ser Ile 80 85 90GAG CCT AGT ATC GGC CTT AAT ATG GCA TGG TCC CAA TTC GAG 1540Glu Pro Ser Ile Gly Leu Asn Met Ala Trp Ser Gln Phe Glu 95 100 105TAC AGC CAC GAT GTA GAT GTA AAG ATC CTG GCC ACT GAT GGC 1582Tyr Ser His Asp Val Asp Val Lys Ile Leu Ala Thr Asp Gly 110 115TCA TCG TTG GGC TCG CCA AGT GAT GTT GTT ATT CGC CCC GTC 1624Ser Ser Leu Gly Ser Pro Ser Asp Val Val Ile Arg Pro Val120 125 130TCA ATC TCC TAT GCG ATT TCT CAG TCT GAC GAT GGT GGG ATT 1666Ser Ile Ser Tyr Ala Ile Ser Gln Ser Asp Asp Gly Gly Ile 135 140 145GTC ATC CGG GTC CCA GCC GAT GCG AAC GGC CGC AAA TTT TCA 1708Val Ile Arg Val Pro Ala Asp Ala Asn Gly Arg Lys Phe Ser 150 155 160GTT GAG TTC AAA ACT GAC CTG TAC ACA TTC CTC TCT GAT GGC 1750Val Glu Phe Lys Thr Asp Leu Tyr Thr Phe Leu Ser Asp Gly 165 170 175AAC GAG TAC GTC ACA TCG GGA GGC AGC GTC GTC GGC GTT GAG 1792Asn Glu Tyr Val Thr Ser Gly Gly Ser Val Val Gly Val Glu 180 185CCT ACC AAC GCA CTT GTG ATC TTC GCA AGT CCG TTT CTT CCT 1834Pro Thr Asn Ala Leu Val Ile Phe Ala Ser Pro Phe Leu Pro190 195 200TCT GGC ATG ATT CCT CAT ATG ACA CCC GAC AAC ACG CAG ACC 1876Ser Gly Met Ile Pro His Met Thr Pro Asp Asn Thr Gln Thr 205 210 215ATG ACG CCA GGT CCT ATC AAT AAC GGC GAC TGG GGC GCC AAG 1918Met Thr Pro Gly Pro Ile Asn Asn Gly Asp Trp Gly Ala Lys 220 225 230TCA ATT CTT TAC TTC CCA CCA GGT GTA TAC TGG ATG AAC CAA 1960Ser Ile Leu Tyr Phe Pro Pro Gly Val Tyr Trp Met Asn Gln 235 240 245GAT CAA TCG GGC AAC TCG GGG AAG TTA GGA TCT AAT CAT ATA 2002Asp Gln Ser Gly Asn Ser Gly Lys Leu Gly Ser Asn His Ile 250 255CGT CTA AAC TCG AAC ACT TAC TGG GTC TAC CTT GCC CCC GGT 2044Arg Leu Asn Ser Asn Thr Tyr Trp Val Tyr Leu Ala Pro Gly260 265 270GCG TAC GTG AAG GGT GCT ATA GAG TAT TTT ACC AAG CAG AAC 2086Ala Tyr Val Lys Gly Ala Ile Glu Tyr Phe Thr Lys Gln Asn 275 280 285TTC TAT GCA ACT GGT CAT GGT ATC CTA TCG GGT GAA AAC TAT 2128Phe Tyr Ala Thr Gly His Gly Ile Leu Ser Gly Glu Asn Tyr 290 295 300GTT TAC CAA GCC AAT GCC GGC GAC AAC TAC ATT GCA GTC AAG 2170Val Tyr Gln Ala Asn Ala Gly Asp Asn Tyr Ile Ala Val Lys 305 310 315AGC GAT TCA ACC AGC CTC CGG ATG TGG TGG CAC AAT AAC CTT 2212Ser Asp Ser Thr Ser Leu Arg Met Trp Trp His Asn Asn Leu 320 325GGG GGT GGT CAA ACA TGG TAC TGC GTT GGC CCG ACG ATC AAT 2254Gly Gly Gly Gln Thr Trp Tyr Cys Val Gly Pro Thr Ile Asn330 335 340GCG CCA CCA TTC AAT ACT ATG GAT TTC AAT GGA AAT TCT GGC 2296Ala Pro Pro Phe Asn Thr Met Asp Phe Asn Gly Asn Ser Gly 345 350 355ATC TCA AGT CAA ATT AGC GAC TAT AAG CAG GTG GGA GCC TTC 2338Ile Ser Ser Gln Ile Ser Asp Tyr Lys Gin Val Gly Ala Phe 360 365 370TTC TTC CAG ACG GAT GGA CCA GAA ATA TAT CCC AAT AGT GTC 2380Phe Phe Gln Thr Asp Gly Pro Glu Ile Tyr Pro Asn Ser Val 375 380 385GTG CAC GAC GTC TTC TGG CAC GTC AAT GAT GAT GCA ATC AAA 2422Val His Asc Val Phe Tro His Val Asn Asc Asp Ala Ile Lys 390 395ATC TAC TAT TCG GGA GCA TCT GTA TCG CGG GCA ACG ATC TGG 2464Ile Tyr Tyr Ser Gly Ala Ser Val Ser Arg Ala Thr Ile Trp400 405 410AAA TGT CAC AAT GAC CCA ATC ATC CAG ATG GGA TGG ACG TCT 2506Lys Cys His Asn Asp Pro Ile Ile Gln Met Gly Trp Thr Ser 415 420 425CGG GAT ATC AGT GGA GTG ACA ATC GAC ACA TTA AAT GTT ATT 2548Arg Asp Ile Ser Gly Val Thr Ile Asp Thr Leu Asn Val Ile 430 435 440CAC ACC CGC TAC ATC AAA TCG GAG ACG GTG GTG CCT TCG GCT 2590His Thr Arg Tyr Ile Lys Ser Glu Thr Val Val Pro Ser Ala 445 450 455ATC ATT GGG GCC TCT CCA TTC TAT GCA AGT GGG ATG AGT CCT 2632Ile Ile Gly Ala Ser Pro Phe Tyr Ala Ser Gly Met Ser Pro 460 465GAT TCA AGA AAG TCC ATA TCC ATG ACG GTT TCA AAC GTT GTT 2674Asp Ser Arg Lys Ser Ile Ser Met Thr Val Ser Asn Val Val470 475 480TGC GAG GGT CTT TGC CCG TCC CTA TTC CGC ATC ACA CCC CTT 2716Cys Glu Gly Leu Cys Pro Ser Leu Phe Arg Ile Thr Pro Leu 485 490 495CAG AAC TAC AAA AAT TTT GTT GTC AAA AAT GTG GCT TTC CCA 2758Gln Asn Tyr Lys Asn Phe Val Val Lys Asn Val Ala Phe Pro 500 505 510GAC GGG CTA CAG ACG AAT AGT ATT GGC ACA GGA GAA AGC ATT 2800Asp Gly Leu Gln Thr Asn Ser Ile Gly Thr Gly Glu Ser Ile 515 520 525ATT CCA GCC GCA TCT GGT CTA ACG ATG GGA CTG AAT ATC TCC 2842Ile Pro Ala Ala Ser Gly Leu Thr Met Gly Leu Asn Ile Ser 530 535AAC TGG ACT GTT GGT GGA CAA AAA GTG ACT ATG GAG AAC TTT 2884Asn Trp Thr Val Gly Gly Gln Lys Val Thr Met Glu Asn Phe540 545 550CAA GCC AAT AGC CTG GGG CAG TTC AAT ATT GAC GGC AGC TAT 2926Gln Ala Asn Ser Leu Gly Gln Phe Asn Ile Asp Gly Ser Tyr 555 560 565TGG GGG GAG TGG CAG ATT AGC TGA ATTCCAGCTC TCGGAGCGCG 2970Trp Gly Glu Trp Gln Ile Ser *** 570 574TGAGTGCTTC TACCCGCTCC TTTACCCTTG TCGAGAGATA AAGGCATAAG 3020TTAGCTCATG TGAAGGCGAT TTCAGTTCAT TCTCTCTTTT TGGAGCTTAT 3070TTCCTGTTCG ACCAATTGTG ACACCAACTT GCCTTTCAAA AGACGTGGAC 3120GATATGTGTA CGGTAATCAG TCAAATGAAC GTCAACATTC ATTTAATAAG 3170GACATTTCCA GGTTTCCTTA CTCTGTCGAT TATGCCTAAC TCGGGTTGAT 3220GTCTTGTCAG GATGGAAAAT CTCGTTGTGT ACTTCCAGTG AAATGGGCAG 3270GGCTAAGCCC TAAACCCTAA CGCATACAAT TTGTAGGCAC CTACCCATGT 3320AAGTTCACAC CCAGTCGACT TATAAGTCTA GATATTTATG CTATGCAGGC 3370TCTGGAATGA TTTACATTCC ATGCTATACA TAGTTATTTG CAAGAATTTG 3420CAGACGAGAT AAAAATCAAT GGACGAATAA TCACGCATTA CTCCACAGGC 3470TCATGCCACG GAGCAAGGGT TCCCCCGAAT CTAGGCCAGA CCGGGATGAT 3520ATTCAACCGA TTCTTTTTGC AGTAACTATC TCCGTACGAG CTGCACGAGC 3570TAAACGGATT ATATAAAGGT GCTAACTGAG CATTGGATCC GTCAGTTATA 3620TGAAATGCA 3629__________________________________________________________________________
__________________________________________________________________________SEQUENCE LISTING(1) GENERAL INFORMATION:(iii) NUMBER OF SEQUENCES: 5(2) INFORMATION FOR SEQ ID NO: 1:(i) SEQUENCE CHARACTERISTICS:(A) LENGTH: 3629 base pairs(B) TYPE: nucleic acid(C) STRANDEDNESS: single(D) TOPOLOGY: linear(ii) MOLECULE TYPE: DNA (genomic)(iii) HYPOTHETICAL: NO(iv) ANTI-SENSE: NO(vi) ORIGINAL SOURCE:(B) STRAIN: Penicillium minioluteum HI-4(xi) SEQUENCE DESCRIPTION: SEQ ID NO: 1:GGCATAGTAATCCCGACAGCCGAGTATGATGGAGCTTCTTCGGATAATGATAGCGCCACC60AGACCTTGCTTGAGCTGGAGAGCTAAAACATTAAACGCCACACGACCAACACTCTCATTA120GTTGCGATAGATGATGCTCGGAGCTGTTGAAACTCAGAAATTCCTTCTATGCGGGGTCTC180CAAGATCGATCCTGGGGGATGTGAATACTACGGTGGACCTAATTGACGCCTTGACAGGTG240ATGTTAAGCGAACCAAGGAAGAATAATCTGGGGCTAGATGAAGATGTTGAGCTGTAAGGT300ACGGTACGTTCCTATTGGCTTTATCGGAGCTTCTCCGGGTTACTCAGTCTTTCCGGGAGC360ATGATCATTTTTGTATTGTCCAATAGTAAGCAGAAACTGAGAGCCACCACAAACTCAAAA420CCTCGGTAGCGAAGTTTCCCGGAACCAGTCAGGATTCTCAGAAACTGTGCTCGTGTTGCG480GGGAATCCGCATTCTACGTCGTCTGGAGCAAGGAAATGTTCGTGCTGGATTGAGGAGGAT540AGGTAGGTTGGAGAATCTCTTCAGCTAACCAATCTATAAGCATGCTCCGGTAACCTTTAG600AGTTTCACATTCAACGTAATTTCCAAGATAGCCAGAGCGTCCTTGAATTACTATGTAGAA660ATCCTAAAATTTCCCCTGTAAAATGCAAGTCAACGAGATGCGTGCCCTCAATGTCTCTCG720GCGCTACCCCGGAAATGATGCATAAGGCCAAGAATGTCACCCGGTAACTTTTTCTTCAGA780ATATCCTAAGATTTCCATCAAACACAGTCGAATAGGTCAATGCTCGCGAGAGACTTTCTG840CCTTCACTCTACGTCCTACTCATAGAAGTTCAACGGCTCAATTCCGGGGTAATCTAGAGT900TTGGACCTCAAGGGAGATGTTGCAACAAATTGTACTAGAACGATGCGCTTGCTTTCCAAT960ACAGTAGTTGACTTCATATAGCTTCCAACAAAAGGGATGGGGATGAAGGCTCTATAGCGA1020GAAGTCTATAAGAAAGTGTCCTCATACCTGTATCTCTCAGTCGTTCGAGAACAATCCCGG1080AAACTATCTTATCTTGCGAGAAAGAAGACAATATCTCAAACTTATGGCCACAATGCTAAA1140GCTACTTGCGTTGACCCTTGCAATTAGCGAGTCCGCCATTGGAGCAGTCATGCACCCACC1200TGGCAATTCTCATCCCGGTACCCATATGGGCACTACGAATAATACCCATTGCGGCGCCGA1260TTTCTGTACCTGGTGGCATGATTCAGGGGAGATCAATACGCAGACACCTGTCCAACCAGG1320GAACGTGCGCCAATCTCACAAGTATTCCGTGCAAGTGAGCCTAGCTGGTACAAACAATTT1380TCATGACTCCTTTGTATATGAATCGATCCCCCGGAACGGAAATGGTCGCATCTATGCTCC1440CACCGATCCACCCAACAGCAACACACTAGATTCAAGTGTGGATGATGGAATCTCGATTGA1500GCCTAGTATCGGCCTTAATATGGCATGGTCCCAATTCGAGTACAGCCACGATGTAGATGT1560AAAGATCCTGGCCACTGATGGCTCATCGTTGGGCTCGCCAAGTGATGTTGTTATTCGCCC1620CGTCTCAATCTCCTATGCGATTTCTCAGTCTGACGATGGTGGGATTGTCATCCGGGTCCC1680AGCCGATGCGAACGGCCGCAAATTTTCAGTTGAGTTCAAAACTGACCTGTACACATTCCT1740CTCTGATGGCAACGAGTACGTCACATCGGGAGGCAGCGTCGTCGGCGTTGAGCCTACCAA1800CGCACTTGTGATCTTCGCAAGTCCGTTTCTTCCTTCTGGCATGATTCCTCATATGACACC1860CGACAACACGCAGACCATGACGCCAGGTCCTATCAATAACGGCGACTGGGGCGCCAAGTC1920AATTCTTTACTTCCCACCAGGTGTATACTGGATGAACCAAGATCAATCGGGCAACTCGGG1980GAAGTTAGGATCTAATCATATACGTCTAAACTCGAACACTTACTGGGTCTACCTTGCCCC2040CGGTGCGTACGTGAAGGGTGCTATAGAGTATTTTACCAAGCAGAACTTCTATGCAACTGG2100TCATGGTATCCTATCGGGTGAAAACTATGTTTACCAAGCCAATGCCGGCGACAACTACAT2160TGCAGTCAAGAGCGATTCAACCAGCCTCCGGATGTGGTGGCACAATAACCTTGGGGGTGG2220TCAAACATGGTACTGCGTTGGCCCGACGATCAATGCGCCACCATTCAATACTATGGATTT2280CAATGGAAATTCTGGCATCTCAAGTCAAATTAGCGACTATAAGCAGGTGGGAGCCTTCTT2340CTTCCAGACGGATGGACCAGAAATATATCCCAATAGTGTCGTGCACGACGTCTTCTGGCA2400CGTCAATGATGATGCAATCAAAATCTACTATTCGGGAGCATCTGTATCGCGGGCAACGAT2460CTGGAAATGTCACAATGACCCAATCATCCAGATGGGATGGACGTCTCGGGATATCAGTGG2520AGTGACAATCGACACATTAAATGTTATTCACACCCGCTACATCAAATCGGAGACGGTGGT2580GCCTTCGGCTATCATTGGGGCCTCTCCATTCTATGCAAGTGGGATGAGTCCTGATTCAAG2640AAAGTCCATATCCATGACGGTTTCAAACGTTGTTTGCGAGGGTCTTTGCCCGTCCCTATT2700CCGCATCACACCCCTTCAGAACTACAAAAATTTTGTTGTCAAAAATGTGGCTTTCCCAGA2760CGGGCTACAGACGAATAGTATTGGCACAGGAGAAAGCATTATTCCAGCCGCATCTGGTCT2820AACGATGGGACTGAATATCTCCAACTGGACTGTTGGTGGACAAAAAGTGACTATGGAGAA2880CTTTCAAGCCAATAGCCTGGGGCAGTTCAATATTGACGGCAGCTATTGGGGGGAGTGGCA2940GATTAGCTGAATTCCAGCTCTCGGAGCGCGTGAGTGCTTCTACCCGCTCCTTTACCCTTG3000TCGAGAGATAAAGGCATAAGTTAGCTCATGTGAAGGCGATTTCAGTTCATTCTCTCTTTT3060TGGAGCTTATTTCCTGTTCGACCAATTGTGACACCAACTTGCCTTTCAAAAGACGTGGAC3120GATATGTGTACGGTAATCAGTCAAATGAACGTCAACATTCATTTAATAAGGACATTTCCA3180GGTTTCCTTACTCTGTCGATTATGCCTAACTCGGGTTGATGTCTTGTCAGGATGGAAAAT3240CTCGTTGTGTACTTCCAGTGAAATGGGCAGGGCTAAGCCCTAAACCCTAACGCATACAAT3300TTGTAGGCACCTACCCATGTAAGTTCACACCCAGTCGACTTATAAGTCTAGATATTTATG3360CTATGCAGGCTCTGGAATGATTTACATTCCATGCTATACATAGTTATTTGCAAGAATTTG3420CAGACGAGATAAAAATCAATGGACGAATAATCACGCATTACTCCACAGGCTCATGCCACG3480GAGCAAGGGTTCCCCCGAATCTAGGCCAGACCGGGATGATATTCAACCGATTCTTTTTGC3540AGTAACTATCTCCGTACGAGCTGCACGAGCTAAACGGATTATATAAAGGTGCTAACTGAG3600CATTGGATCCGTCAGTTATATGAAATGCA3629(2) INFORMATION FOR SEQ ID NO: 2:(i) SEQUENCE CHARACTERISTICS:(A) LENGTH: 574 amino acids(B) TYPE: amino acid(C) STRANDEDNESS: unknown(D) TOPOLOGY: unknown(ii) MOLECULE TYPE: protein(iii) HYPOTHETICAL: NO(vi) ORIGINAL SOURCE:(B) STRAIN: Penicillium minioluteum HI-4(xi) SEQUENCE DESCRIPTION: SEQ ID NO: 2:MetGlyThrThrAsnAsnThrHisCysGlyAlaAspPheCysThrTrp151015TrpHisAspSerGlyGluIleAsnThrGlnThrProValGlnProGly202530AsnValArgGlnSerHisLysTyrSerValGlnValSerLeuAlaGly354045ThrAsnAsnPheHisAspSerPheValTyrGluSerIleProArgAsn505560GlyAsnGlyArgIleTyrAlaProThrAspProProAsnSerAsnThr65707580LeuAspSerSerValAspAspGlyIleSerIleGluProSerIleGly859095LeuAsnMetAlaTrpSerGlnPheGluTyrSerHisAspValAspVal100105110LysIleLeuAlaThrAspGlySerSerLeuGlySerProSerAspVal115120125ValIleArgProValSerIleSerTyrAlaIleSerGlnSerAspAsp130135140GlyGlyIleValIleArgValProAlaAspAlaAsnGlyArgLysPhe145150155160SerValGluPheLysThrAspLeuTyrThrPheLeuSerAspGlyAsn165170175GluTyrValThrSerGlyGlySerValValGlyValGluProThrAsn180185190AlaLeuValIlePheAlaSerProPheLeuProSerGlyMetIlePro195200205HisMetThrProAspAsnThrGlnThrMetThrProGlyProIleAsn210215220AsnGlyAspTrpGlyAlaLysSerIleLeuTyrPheProProGlyVal225230235240TyrTrpMetAsnGlnAspGlnSerGlyAsnSerGlyLysLeuGlySer245250255AsnHisIleArgLeuAsnSerAsnThrTyrTrpValTyrLeuAlaPro260265270GlyAlaTyrValLysGlyAlaIleGluTyrPheThrLysGlnAsnPhe275280285TyrAlaThrGlyHisGlyIleLeuSerGlyGluAsnTyrValTyrGln290295300AlaAsnAlaGlyAspAsnTyrIleAlaValLysSerAspSerThrSer305310315320LeuArgMetTrpTrpHisAsnAsnLeuGlyGlyGlyGlnThrTrpTyr325330335CysValGlyProThrIleAsnAlaProProPheAsnThrMetAspPhe340345350AsnGlyAsnSerGlyIleSerSerGlnIleSerAspTyrLysGlnVal355360365GlyAlaPhePhePheGlnThrAspGlyProGluIleTyrProAsnSer370375380ValValHisAspValPheTrpHisValAsnAspAspAlaIleLysIle385390395400TyrTyrSerGlyAlaSerValSerArgAlaThrIleTrpLysCysHis405410415AsnAspProIleIleGlnMetGlyTrpThrSerArgAspIleSerGly420425430ValThrIleAspThrLeuAsnValIleHisThrArgTyrIleLysSer435440445GluThrValValProSerAlaIleIleGlyAlaSerProPheTyrAla450455460SerGlyMetSerProAspSerArgLysSerIleSerMetThrValSer465470475480AsnValValCysGluGlyLeuCysProSerLeuPheArgIleThrPro485490495LeuGlnAsnTyrLysAsnPheValValLysAsnValAlaPheProAsp500505510GlyLeuGlnThrAsnSerIleGlyThrGlyGluSerIleIleProAla515520525AlaSerGlyLeuThrMetGlyLeuAsnIleSerAsnTrpThrValGly530535540GlyGlnLysValThrMetGluAsnPheGlnAlaAsnSerLeuGlyGln545550555560PheAsnIleAspGlySerTyrTrpGlyGluTrpGlnIleSer565570(2) INFORMATION FOR SEQ ID NO: 3:(i) SEQUENCE CHARACTERISTICS:(A) LENGTH: 16 amino acids(B) TYPE: amino acid(C) STRANDEDNESS:(D) TOPOLOGY: linear(ii) MOLECULE TYPE: peptide(iii) HYPOTHETICAL: NO(xi) SEQUENCE DESCRIPTION: SEQ ID NO: 3:MetGlyThrThrAsnAsnThrHisCysGlyAlaAspPheCysThrTrp151015(2) INFORMATION FOR SEQ ID NO: 4:(i) SEQUENCE CHARACTERISTICS:(A) LENGTH: 24 base pairs(B) TYPE: nucleic acid(C) STRANDEDNESS: single(D) TOPOLOGY: linear(ii) MOLECULE TYPE: other nucleic acid(iii) HYPOTHETICAL: NO(xi) SEQUENCE DESCRIPTION: SEQ ID NO: 4:ATGGGCACTACGAATAATACCCAT24(2) INFORMATION FOR SEQ ID NO: 5:(i) SEQUENCE CHARACTERISTICS:(A) LENGTH: 22 base pairs(B) TYPE: nucleic acid(C) STRANDEDNESS: single(D) TOPOLOGY: linear(ii) MOLECULE TYPE: other nucleic acid(iii) HYPOTHETICAL: NO(xi) SEQUENCE DESCRIPTION: SEQ ID NO: 5:GGAAACCTGGAAATGTCCTTAT22__________________________________________________________________________

Dextranase enzyme, method for its production and DNA encoding the enzyme

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