Patent Application
20160146834
The invention in some aspects relates to diagnostic and predictive tests in which a combination of markers is used to predict an individual's risk for (provide the likelihood of an individual's) developing coronary artery disease (CAD) and related diseases, such as angina pectoris and peripheral vascular disease and, more particularly, to determine an individual's risk of myocardial infarction, death, and/or stroke. The methods and compositions can be used in some aspects to 1) detect CAD or the risk of developing CAD in an individual in the absence of known coronary artery disease, 2) detect risk of acute myocardial infarction (AMI) or death in individuals with known CAD, and 3) to detect risk of AMI or death in individuals in the absence of known CAD.
Coronary artery disease and its consequences affect millions of people worldwide; it is the leading cause of death in the United States. The most common manifestation of CAD is chest pain (angina pectoris) due to myocardial ischemia, which can lead to heart attack (acute myocardial infarction or AMI) and sudden death. According to the CDC, about 1.3 million Americans have a heart attack each year. In addition to those who exhibit clinical symptoms of ischemic heart disease, many other individuals are at high risk of developing heart disease based on indicators such as hypertension, high levels of serum cholesterol and/or family history. However, a national study from UCLA shows that approximately 75% of patients who had heart attacks did not have high cholesterol (Am Heart J. 2009 January; 157(1):111-117.e2. Epub 2008 Oct. 22). Of those patients who have heart attacks, 88% would have been deemed low to intermediate risk just the day before (BaleDoneen CVD prevention program. www.baledoneen.com). Current tools are remiss in determining many patients at high risk for cardiac events.
Current diagnostic procedures have not been entirely satisfactory, for example in identifying individuals at-risk for certain outcomes. Diagnostic and predictive methods and systems are needed for coronary artery disease, such as those that are non-invasive, sensitive, and reliable for the assessment and prediction of adverse cardiovascular outcomes, particularly for people at risk for CAD and its consequences. Provided are embodiments to meet these needs.
In one aspect, the invention described herein meets the need for assessing and predicting adverse cardiovascular outcomes, particularly for individuals at risk for CAD and individuals who have CAD and consequences of CAD. Provided are diagnostic and predictive methods for assessing, detecting, predicting, and prognosing adverse cardiovascular outcomes (and risks thereof), such as CAD and associated outcomes and conditions; systems, e.g. kits, for performing the methods; and methods of treatment, for example, of individuals assessed using the diagnostic or predictive methods. In some embodiments, the methods determine risk or assess increased probability of one or more adverse outcomes of CAD. In one aspect, the provided methods and systems meet the need for a noninvasive method for 1) detecting CAD or risk of developing CAD in an individual in the absence of known CAD, 2) detecting and predicting risk of myocardial infarction (MI), e.g., acute MI (AMI) and/or death, and predicting risk of stroke in a patient (individual) with known CAD, and 3) predicting risk of AMI and/or death and/or predicting risk of stroke in a patient (individual) with previously unknown CAD.
In some embodiments, the methods are carried out by detecting or measuring the presence, absence, expression, and/or level of biomarkers, typically of each of a plurality of biomarkers, in a sample, e.g., a test biological sample, such as one obtained from a subject being evaluated by the methods.
In some embodiments, the methods are carried out by contacting a test biological sample, such as one from the subject being evaluated by the methods, with a panel of agents that specifically bind to a plurality of biomarkers, thereby measuring levels of the plurality of biomarkers.
In some embodiments, the methods are carried out by comparing the level of each of the plurality of biomarkers in the subject, e.g., in a test sample from the subject, to a control level of the respective biomarker.
The plurality of biomarkers generally includes one or more of a thrombosis biomarker, a cellular stress biomarker, an inflammation biomarker, and/or an autoimmune biomarker, typically at least two of a thrombosis biomarker, a cellular stress biomarker or autoimmune biomarker, an inflammation biomarker, and in some aspects includes a thrombosis biomarker, a cellular stress biomarker or autoimmune biomarker, and an inflammation biomarker, for example, a thrombosis biomarker, a cellular stress biomarker, and an inflammation biomarker or a thrombosis biomarker, an autoimmune biomarker, and an inflammation biomarker. The plurality of biomarkers in some cases further includes an infection biomarker. The level of two or more, three or more, or four or all of the types of biomarkers (inflammatory biomarkers, infectious biomarkers, thrombotic biomarkers, cellular stress biomarkers, autoimmune biomarkers) can be assessed. The level of two or more biomarkers of the same type (e.g., two or more inflammatory biomarkers, two or more infectious biomarkers, two or more thrombotic biomarkers, two or more cellular stress biomarkers, two or more autoimmune biomarkers) can be measured.
In some embodiments, the thrombosis biomarker is an FDP marker, where the FDP marker includes at least one fibrin and fibrinogen degradation product (FDP), and in some embodiments includes a mixture of at least two fibrin and fibrinogen degradation products (FDPs). Thus, in some examples, the plurality of biomarkers includes an FDP marker, where the FDP marker includes at least one or a mixture of at least two fibrin and fibrinogen degradation product gene products, e.g., at least one or a mixture of at least two fibrin and fibrinogen degradation products (FDPs). In one example, the at least one or at least two FDPs include an FDP selected from among fragment D, fragment E, and D-dimer, or from among fragment D and fragment E. In one example, the at least one or two FDPs include fragment D, fragment E, and D-dimer, or fragment D and E. In some examples, the FDPs further include fragment X, fragment Y, or one or more initial plasmin digest products (IPDPs). In some cases, the at least one or two FDPs include one, more, or all FDPs detected by the DR-70® ELISA assay. In another example, they include one or more FDPs described in International Application Publication Number WO 2010/114514 A1. In another example they include one or more FDPs detected by a Fibrinogen ELISA assay.
Thus, in some embodiments, the panel of agents includes an agent or agents for detection of the FDP marker. In some aspects, the panel includes an agent or agents that is or are capable of specifically binding to at least two FDPs, such as at least two FDPs selected from among fragment D, fragment E, and D-dimer, or from among fragment D and fragment E. In one example, the at least one or two FDPs include fragment D, fragment E, and D-dimer, or fragment D and E. In some examples, the FDPs further include fragment X, fragment Y, or one or more initial plasmin digest products (IPDPs). In some cases, the at least one or two FDPs include one, more, or all FDPs detected by the DR-70® ELISA assay. In another example, they include one or more FDPs described in International Application Publication Number WO 2010/114514 A1. In another example they include one or more FDPs detected by a Fibrinogen ELISA assay.
In some such examples, the plurality of biomarkers further includes at least one inflammation or autoimmune disease or cellular stress biomarker, or at least one each of both an inflammation and an autoimmune disease or cellular stress biomarker, such as an inflammation and an autoimmune disease biomarker or an inflammation and a cellular stress biomarker. Thus, in some aspects, the agents include an agent or agent that specifically binds or bind to such biomarkers.
In some aspects, the at least one inflammation biomarker includes C-reactive protein (CRP) gene product, such as a CRP protein. In some aspects, the at least one autoimmune disease or cellular stress biomarker includes a Heat Shock Protein 70 (HSP70) gene product, such as an HSP70 protein. Thus, in some aspects, the agents include an agent or agent that specifically binds or bind to such biomarkers.
In some aspects, the biomarkers further include an anti-cytomegalovirus antibody gene product, such as an anti-cytomegalovirus antibody. In some aspects, the biomarkers further include an antibody to Heat Shock Protein 60 (anti-HSP60) gene product, e.g., an anti-HSP60 protein. Thus, in some aspects, the agents include an agent or agent that specifically binds or bind to such biomarkers.
In some embodiments, the plurality of biomarkers includes Heat Shock Protein 70 (HSP70), C-reactive protein (CRP), and an FDP marker. In some embodiments, the method measures levels of CRP and FDP marker, measures levels of CRP, FDP marker and HSP70, measures levels of CRP, FDP marker and anti-CMV Ab, or measures levels of CRP, FDP marker, HSP 70 and anti-CMV Ab. Thus, in some aspects, the agents include an agent or agent that specifically binds or bind to such biomarkers.
The levels, e.g., the detected or measured levels, or the levels relative to other levels, such as control levels, of the plurality of biomarkers generally indicate a risk of an adverse cardiovascular outcome in the subject. Typically, the levels, for example, the levels, in the aggregate, indicate the risk. For example, the levels of the biomarkers, in the aggregate, can indicate an increased risk of an adverse cardiovascular outcome, for example, that the adverse cardiovascular outcome is more likely in the subject compared to the average likelihood of the outcome in a given population of subjects, such as healthy individuals, individuals who do not have CAD, or individuals who are at low risk for such an outcome.
In some aspects, an elevated level or increased level of only one of the biomarkers, alone (i.e., without at least one another of the biomarkers elevated or increased) would not indicate the increased risk.
In some aspects, the levels (such as elevated levels), e.g., in the aggregate, of the biomarkers indicate at least a 1.5, 2, 2.5, 3, 3.5, 4, 4.5, 5, 5.5, 6, 6.5, 7, 8, 9, 10 or more times greater risk of the adverse cardiovascular outcome, such as stroke, or death, for example, annually, in the subject, compared to another subject, such as one in which none of the plurality of biomarkers is elevated or positive.
In some aspects, the determination that one biomarker, and typically at least two (e.g., 2, 3, 4, or more) biomarkers, is or are elevated indicates a risk of the adverse cardiovascular outcome in the subject, such as at or about or at least at or about 0.5%, 1%, 3%, 5%, 7%, 10%, 15%, 20%, 25%, 30%, 35%, 40%, 45%, 50%, 55%, 60%, 65%, 70%, or more risk of developing the adverse outcome, such as AMI or death, for example, within a given period of time, such as 1, 2, 3, 4, or more years, such as within 1200 days. In one example, determination that at least two biomarkers are elevated indicates an at or about 10%, 15%, 20%, 25%, 30%, or 35% risk of the adverse outcome within the period of time; in another example, determination that at least three biomarkers are elevated indicates an at or about 15%, 20%, 30%, 35%, 40%, 45%, or 50% risk of the adverse outcome within the period of time.
In one aspect, an increase in the levels of the plurality of biomarkers, for example, in the aggregate, in the subject, e.g., in the test sample compared to the control levels, indicates a risk of an adverse cardiovascular outcome in the subject.
In some embodiments, the level of the FDP marker is elevated or positive if greater than 1 micrograms per milliliter of sample; in some embodiments, the level of the CRP gene product is elevated or positive if greater than 3 milligrams per liter of sample; in one embodiment, the level of HSP70 gene product is elevated or positive if detectable in the sample. In certain embodiments, the level of HSP70 gene product is elevated or positive if greater than 0.313 nanograms per milliliter (0.313 ng/ml) of sample.
As described herein, an aggregate score based on measures of CRP, FDP marker and HSP70 is a strong predictor of future risk of developing (the likelihood of developing) CAD in individuals. In one embodiment, the aggregate score is a strong predictor of risk of adverse effects of CAD, such as myocardial infarction (MI) (aka acute MI (AMI)) and death, in subjects not known to have CAD (e.g., patients being considered for assessment, such as by coronary angiography). In an alternative embodiment, the aggregate score is a strong predictor of risk of adverse effects of CAD, such as AMI and death, in subjects (e.g., patients) with known CAD.
Thus, the adverse cardiovascular outcome can be developing CAD, an adverse effect of CAD, such AMI, stroke, or death. In some cases, the adverse cardiovascular outcome is the occurrence of such an outcome in a given period of time, e.g., 1, 2, 3, 4, 5, or more years, such as within 1-2, 2-3, or 1-3 years. Thus, in some cases, the method predicts the near-term risk of any of the above outcomes, such as the risk that the outcome will occur in 2-3 years.
In the embodiments in which the level of an FDP marker is measured in a biological (test) sample from an individual being assessed, the individual being assessed is at increased risk or there is a greater probability of developing CAD or adverse outcomes of CAD if the level of the FDP marker in the biological sample is significantly higher than the level in a reference or standard, such as the FDP marker level in individuals who do not have CAD. In the embodiments in which the level of FDP marker and the level of CRP are measured in a biological sample from an individual being assessed, the individual being assessed is at increased risk or there is a greater probability of developing CAD or adverse outcomes of CAD if the level of FDP marker in the biological sample is significantly higher than the FDP marker level in a reference or standard, such as the FDP marker level in individuals who do not have CAD and if the level of CRP in the biological sample is significantly higher than the CRP level in a reference or standard, such as the CRP level in individuals who do not have CAD. In certain embodiments in which the level of FDP marker, the level of CRP, and the level of HSP70 are measured in a biological sample from an individual being assessed, the individual being assessed is at increased risk or there is a greater probability of developing CAD or adverse outcomes of CAD if (a) the level of FDP marker in the biological sample is significantly higher than the FDP level in a reference or standard, such as the FDP marker level in individuals who do not have CAD; (b) the level of CRP in the biological sample is significantly higher than the CRP level in a reference or standard, such as the CRP level in individuals who do not have CAD and (c) HSP70 is significantly higher than the HSP70 level in a reference or standard, such as the HSP70 level in individuals who do not have CAD.
In certain embodiments, if the level of FDP marker in the biological sample is determined to be greater than about 1.0 μg/ml; the level of CRP in the biological sample is greater than about 3.0 mg/L and HSP70 is detectable, for example, even if it is detected at very low levels, in the biological sample, the individual being assessed is at greater risk than if the FDP marker level is less than about 1.0 μg/ml; the CRP level is less than 3.0 mg/L and HSP70 is not detectable. In other embodiments, if the level of FDP marker in the biological sample is determined to be greater than about 1.0 μg/ml; the level of CRP in the biological sample is greater than about 3.0 mg/L, and the level of HSP70 in the biological sample is greater than about 0.313 ng/ml, the individual being assessed is at greater risk than if the FDP marker level is less than about 1.0 μg/ml; the CRP level is less than about 3.0 mg/L and HSP70 is less than about 0.313 ng/ml. In yet other embodiments, if the level of FDP marker in the biological sample is determined to be greater than about 1.0 μg/ml, the level of CRP in the biological sample is greater than about 3.0 mg/L, the level of HSP70 in the biological sample is greater than about 0.313 ng/ml, and the level of soluble urokinase-type plasminogen activator receptor (suPAR) in the biological sample is about or greater than about 3.5 ng/ml, the individual being assessed is at greater risk than if the FDP marker level is less than about 1.0 μg/ml, the CRP level is less than about 3.0 mg/L, HSP70 is less than about 0.313 ng/ml, and suPAR in the biological sample is less than about 3.5 ng/ml.
The methods can be performed to assess various subjects, typically patients. In some embodiments, the subject is a mammal, e.g., a human. The subject can be, for example, a patient known to have CAD (i.e., with confirmed CAD), such as significant or insignificant CAD, stable CAD, or one suspected of having CAD. In some aspects, the subject is a patient known to have CAD, a patient with significant CAD or a patient with insignificant CAD. In some cases, the subject is a patient suspected of having CAD. In some aspects, the subject is one who is not presenting with, has not presented with, or has no symptoms of CAD or with symptoms of other cardiovascular outcomes. In one aspect, the subject is one who has had a recent acute coronary syndrome (ACS). In another aspect, the subject is a patient with or without known CAD or with or without symptoms of CAD but who has been found to have a high coronary calcium score, or been tested in an FRS, coronary calcium test, or second-tier blood test indicating the subject is at an intermediate or high-risk. In another aspect, the subject is a patient with significant CAD who has not had an AMI event within the last 30 days.
In some embodiments, the methods further include comparing the level of one or more, typically each, of the plurality of biomarkers measured in the test biological sample to a control level of the respective biomarker. In one aspect, the comparison involves measuring the level of one or more, e.g., each, of the plurality of biomarkers in a control sample. Typically, the control level so measured is then compared with the level measured in the test biological sample. Alternatively, the methods can include simply comparing a previously determined or predefined control level to the level measured in the test biological sample. For example, the control level of each biomarker can be calculated from data, such as data including the levels of the biomarker in control biological samples from a plurality of control subjects. Often, the control subjects and the subject under assessment are of the same species. In one example, the test biological sample and the control samples comprise plasma or serum. In one aspect, the risk of the adverse cardiovascular outcome in the subject is increased if the levels in the test biological sample are higher than the control levels.
In some examples, if the levels of the at least two biomarkers are significantly different (or higher) than their respective control levels, then the subject, e.g., the mammal, is assessed or identified as at increased probability of CAD or myocardial infarction or death.
The samples, e.g., the test biological samples and control samples, can be any biological sample. Typically, the sample is a body fluid or tissue obtained from the subject. Among the sample types for use with the methods are whole blood, blood fractions, blood components, plasma, platelets, serum, cerebrospinal fluid (CSF), bone marrow, urine, tears, milk, lymph fluid, organ tissue, nervous system tissue, non-nervous system tissue, muscle tissue, biopsy, necropsy, fat biopsy, fat tissue, cells, feces, placenta, spleen tissue, lymph tissue, pancreatic tissue, bronchoalveolar lavage (BAL), and synovial fluid. In some embodiments, the test biological sample and/or the control sample is whole blood, blood fractions, blood components, plasma, platelets, serum, or urine.
Detection or measurement of the biomarker levels can be carried out using any of a number of known methods. In one aspect, the measuring or detecting is carried out by immunoassay, for example, by combining the biological sample being assessed or sample derived therefrom with antibodies that specifically bind to the plurality of biomarkers, under conditions under which binding of the antibodies with their respective partners occurs, such as by ELISA. In one aspect, the levels of the FDP marker (e.g., mixture of FDPs) are measured using the DR70® assay. In another example they include one or more FDPs detected by a Fibrinogen ELISA assay that uses either anti-Fibrinogen polyclonal or multiple monoclonal antibodies. In another aspect, the CRP gene product (e.g., CRP protein) is measured using a high-sensitivity CRP (hs-CRP) assay.
Also provided are methods of treatment, for example, of subjects assessed by the above-described methods. In some embodiments, the methods are carried out by assessing or determining the risk of an adverse cardiovascular outcome or detecting levels of a plurality of biomarkers in a subject by any of the above-described methods and treating, altering or modifying treatment of, or discontinuing treatment of the subject, for example, for the adverse cardiovascular outcome. In some cases, the methods further include a step of first treating the subject for a cardiovascular event or outcome, prior to determining the risk.
In some aspects, such methods are performed in an iterative fashion. For example, in some cases, the methods further include repeating the assessment or determination step following treatment, such as after a certain period of time following treatment, for example, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10 11, or 12 months or more following treatment, for example, to determine whether risk and/or disease has been favorably altered by treatment, and/or to determine whether additional, e.g., more aggressive, treatment is needed. For example, a determination after such repetition that the biomarker levels have not decreased or have not substantially decreased, can indicate that risk has not been favorably altered and/or that additional, e.g., more aggressive treatment is necessary. Thus, the methods in some aspects further include then administering additional therapy to the subject. In some aspects, the treatment methods include determining whether a subject is at increased risk (has increased probability) of having adverse cardiovascular outcome, e.g., by the above-described methods, and selecting a particular treatment course if the subject has increased probability of having adverse cardiovascular outcome.
Also provided are systems, e.g., kits, for performing the diagnostic methods, such as kits containing one or more agents that specifically bind to or hybridize to the biomarkers, typically an agent that specifically binds or hybridizes to each of the plurality of biomarkers, in any combination as described above.
In any of the preceding embodiments, the plurality of biomarkers can include a urokinase or urokinase receptor marker. In certain aspects, a urokinase or urokinase receptor marker may include gene products of a urokinase gene or a urokinase receptor gene, respectively. In other aspects, a urokinase marker or urokinase receptor marker may include a urokinase or urokinase receptor gene DNA sequence, e.g., as indicated by the amplification, deletion, or other mutation status of the urokinase or urokinase receptor gene DNA sequence. In yet other aspects, a urokinase or urokinase receptor marker may include urokinase or urokinase receptor cDNA or mRNA sequences, urokinase or urokinase receptor proteins, or urokinase or urokinase receptor metabolites. In certain embodiments, a urokinase or urokinase receptor marker may include urokinase or urokinase receptor polymorphisms, mutations, variants, modifications, subunits, fragments, protein-ligand complexes, degradation products, protein-ligand complexes, elements, related metabolites, and other analytes or sample-derived measures that are associated with a biological state, for example, increased risk for developing CAD and related diseases. In other embodiments, a urokinase or urokinase receptor marker can also include mutated proteins or mutated nucleic acids of a urokinase or urokinase receptor. In particular embodiments, a urokinase receptor maker can be a soluble protein or fragment of a urokinase receptor.
In some embodiments, the plurality of biomarkers includes Heat Shock Protein 70 (HSP70), C-reactive protein (CRP), a urokinase or urokinase receptor marker, and an FDP marker. In some embodiments, the method measures levels of a urokinase or urokinase receptor and an FDP marker, measures levels of a urokinase or urokinase receptor, CRP and FDP marker, measures levels of a urokinase or urokinase receptor, CRP, FDP marker and HSP70, measures levels of a urokinase or urokinase receptor, CRP, FDP marker and anti-CMV Ab, or measures levels of a urokinase or urokinase receptor, CRP, FDP marker, HSP70 and anti-CMV Ab. In particular embodiments, the method measures levels of a soluble urokinase receptor and an FDP marker, measures levels of a soluble urokinase receptor, CRP and FDP marker, measures levels of a soluble urokinase receptor, CRP, FDP marker and HSP70, measures levels of a soluble urokinase receptor, CRP, FDP marker and anti-CMV Ab, or measures levels of a soluble urokinase receptor, CRP, FDP marker, HSP70 and anti-CMV Ab. Thus, in some aspects, the agents include an agent or agent that specifically binds or bind to such biomarkers.
In some aspects, the determination that four biomarkers (a urokinase or urokinase receptor, CRP, FDP marker, and HSP 70) are elevated indicates a risk of the adverse cardiovascular outcome in the subject, such as at or about or at least at or about 5%, 10%, 15%, 20%, 25%, 30%, 35%, 40%, 45%, 50%, 55%, 60%, 65%, 70%, 75%, 80%, 85%, 90%, 95% or more risk of developing the adverse outcome, such as AMI or death, for example, within a given period of time, such as 1, 2, 3, 4, or more years, such as within 1200 days. In particular examples, when the risk is measured as a hazard ratio, use of four biomarkers, including a urokinase or urokinase receptor (e.g., suPAR), CRP, FDP marker, and HSP 70, identifies a population of subjects with a hazard ratio of MI or death of about or of at least about 7, or identifies a subgroup in a CAD population with a hazard ratio of MI or death of about or of at least about 7. In particular examples, when the risk is measured using an event rate, for example, an absolute event rate, use of four biomarkers (a urokinase or urokinase receptor, CRP, FDP marker, and HSP 70) identifies a population of subjects with an absolute event rate for MI or death of about or of at least about 22%, or identifies a subgroup in a CAD population with an absolute event rate for MI or death of about or of at least about 22%.
In one aspect, an increase in the levels of the plurality of biomarkers including a urokinase or urokinase receptor (e.g., a soluble urokinase receptor), CRP, FDP marker, and HSP 70 in the aggregate, in the subject, e.g., in the test sample compared to the control levels, indicates a risk of an adverse cardiovascular outcome in the subject.
A detailed description of one or more embodiments of the claimed subject matter is provided below along with accompanying figures that illustrate the principles of the claimed subject matter. The claimed subject matter is described in connection with such embodiments, but is not limited to any embodiment. It is to be understood that the claimed subject matter may be embodied in various forms, and encompasses numerous alternatives, modifications and equivalents. Therefore, specific details disclosed herein are not to be interpreted as limiting, but rather as a basis for the claims and as a representative basis for teaching one skilled in the art to employ the claimed subject matter in virtually any appropriately detailed system, structure or manner. Numerous specific details are set forth in the following description in order to provide a thorough understanding of the present disclosure. These details are provided for the purpose of example and the claimed subject matter may be practiced according to the claims without some or all of these specific details. It is to be understood that other embodiments can be used and structural changes can be made without departing from the scope of the claimed subject matter. For the purpose of clarity, technical material that is known in the technical fields related to the claimed subject matter has not been described in detail so that the claimed subject matter is not unnecessarily obscured.
Unless defined otherwise, all terms of art, notations and other technical and scientific terms or terminology used herein are intended to have the same meaning as is commonly understood by one of ordinary skill in the art to which the claimed subject matter pertains. In some cases, terms with commonly understood meanings are defined herein for clarity and/or for ready reference, and the inclusion of such definitions herein should not necessarily be construed to represent a substantial difference over what is generally understood in the art. Many of the techniques and procedures described or referenced herein are well understood and commonly employed using conventional methodology by those skilled in the art.
All publications, including patent documents, scientific articles and databases, referred to in this application and the bibliography and attachments are incorporated by reference in their entirety for all purposes to the same extent as if each individual publication were individually incorporated by reference. If a definition set forth herein is contrary to or otherwise inconsistent with a definition set forth in the patents, applications, published applications and other publications that are herein incorporated by reference, the definition set forth herein prevails over the definition that is incorporated herein by reference.
Available CAD diagnostic and predictive methods have not been entirely effective, for example, in identifying the majority of individuals in who are at risk of acute myocardial infarction (AMI) or death. Cardiac markers serve an important role in the early detection and monitoring of cardiovascular disease. Markers of disease are typically substances found in a bodily sample that can be easily measured. The measured amount can correlate with underlying disease pathophysiology, presence or absence of a current or imminent cardiac event, or probability of a cardiac event in the future. Current markers, even in combination with other measurements or risk factors, do not adequately identify patients at risk of CAD and its adverse effects.
The invention relates in part to the discovery that the levels of a combination of biomarkers associated with inflammation, thrombotic disease, cellular stress, and autoimmune diseases (and in particular, inflammation, thrombotic disease, and cellular stress) and optionally infection, can be measured and the levels in the aggregate used in assessing the risk of adverse cardiac events in humans. Inflammation, cellular stress, infection, and thrombotic and autoimmune diseases can contribute, through individual pathways, to an aggregate burden of risk for CAD and its adverse consequences, particularly for plaque rupture (also known as acute myocardial infarction (AMI)) and death. Activation of diverse pathophysiologic processes that include inflammatory, cellular stress, infectious, thrombotic, and immune pathways, contribute to the development of CAD, subsequent plaque rupture and adverse outcomes. In some embodiments, provided are methods involving the measurement of biomarkers, such as CRP gene products and FDP marker (including two or more FDPs), in some cases in combination with HSP70 and/or CMV to perform risk assessment of adverse cardiac outcome in a subject. Such methods are useful, for example, to identify subjects presenting with known CAD and for whom the probability of undergoing a significant adverse cardiovascular outcome, such as a plaque rupture is elevated. The assay is also useful to identify subjects (in identifying individuals) who do not have a prior diagnosis of CAD, who have CAD but in which stenoses are deemed not hemodynamically significant, and/or who are at an increased risk of an adverse cardiac outcome.
In order to facilitate an understanding of the provided embodiments, selected terms used in the application will be discussed below.
The term “adverse cardiovascular outcome” emanating from atherosclerosis refers to coronary artery disease (CAD), ischemic heart disease (IHD), angina pectoris, AMI, death, stroke and peripheral vascular disease.
The term “coronary artery disease” refers to atherosclerotic disease of the coronary arteries, but also infers probable atherosclerotic disease of the peripheral arteries such as those supplying the legs and the brain, and includes the consequences of CAD, such as myocardial infarction and death, angina pectoris, stroke and peripheral vascular disease.
The term “biomarker” refers to a distinctive biological or biologically derived indicator of a process, event, or condition. Biomarkers as used herein encompass, without limitation, gene products, including proteins, nucleic acids, and metabolites, together with their polymorphisms, mutations, variants, modifications, subunits, fragments, protein-ligand complexes, and degradation products, protein-ligand complexes, elements, related metabolites, and other analytes or sample-derived measures that are associated with a biological state. Biomarkers can also include mutated proteins or mutated nucleic acids. Biomarkers preferably include inflammatory, infection, thrombotic or autoimmune biomarkers.
The term “inflammation biomarker” or “biomarker of inflammation,” as used herein, refers to a biomarker that is an indicator of inflammation. Exemplary inflammation biomarkers include C-reactive protein (CRP), interleukin (IL)-6, and serum amyloid A protein, homocysteine.
The term “biomarker of infection” or “infection biomarker,” as used herein, refers to a biomarker that is an indicator of infectious diseases. A list of potential infection biomarkers (biomarkers of infection) can be found at the Infectious Disease Biomarker Database (IDBD http://biomarker.cdc.go.kr and http://biomarker.korea.ac.kr). Exemplary infection biomarkers include gene products of (including proteins): CRP, anti-cytomegalovirus (CMV) antibody, Chlamydia pneumonia, herpes simplex virus (HSV) types 1 and 2, Helicobacter pylori, and hepatitis A virus, as well as periodontal pathogens.
“Autoimmune disease biomarker,” or “biomarker of autoimmune disease,” as used herein, refers to a biomarker that is an indicator of autoimmune disease. Three groups of gene products, e.g., proteins, are reflective of the autoimmune disease process: (1) degradation products arising from destruction of affected tissues, (2) enzymes that play a role in tissue degradation and (3) cytokines and other proteins associated with immune activation (Prince, H. E., Biomarkers, 2005, Nov. 10, Suppl 1: S44-49). Exemplary autoimmune disease biomarkers include gene products of (including proteins): antibody to Heat Shock Protein 60 (anti-HSP60), Heat Shock Protein 70 (HSP70), aggrecan fragments, C-propeptide of type II collagen and cartilage oligomeric matrix protein, matrix metalloprotease (MMP)-1, MMP-3 and MMP-1/inhibitor complexes thioredoxin, IL-16 and tumour necrosis factor (TNF)-alpha, neurofilament light protein and glial fibrillary acidic protein, MMP-2 and MMP-9 and TNF-alpha and soluble vascular adhesion molecule-1.
“Cellular stress biomarker,” or “biomarker of cellular stress,” as used herein, refers to a biomarker, the levels of which increase when a cell is exposed to stress. Exemplary cellular stress biomarkers include Heat Shock Protein (HSP) 70 (HSP70), and certain other HSPs, such as HSP32, HSP27, HSP72, HSP90, HSP47, as well as ubiquitin, and Hsc70, and cellular stress biomarkers discussed by Rajdev and Sharp, Toxicologic Pathology, 28(1) 105-112 (2000); Zhou et al., Circulation, 110: 207-213 (2004).
The term “biomarker of thrombosis,” or “thrombosis biomarker,” as used herein, refers to a biomarker that is an indicator of thrombosis. Some examples include fibrinogen, prothrombin 1.2, tissue plasminogen activator antigen (tPA), plasminogen activator inhibitor-1 (PAI-1), and FDP markers, such as an FDP marker that includes a mixture of at least two fibrin and fibrinogen degredation products (FDPs), such as two or more of fragments X, Y, D, D-dimer, and E fragment Y, and initial plasmin digest products (IPDP).
As used herein, the terms “fibrin degradation product(s),” “fibrin and fibrinogen degradation product(s),” and “FDP” refer to one or more fragments produced when either fibrin or fibrinogen is degraded. FDPs include four principal FDPs, called X, Y, D, and E fragments (fragment X, fragment Y, fragment D, and fragment E) that are liberated in various combinations. Cleavage of fibrinogen by plasmin produces fragments D and E as the primary end-products. Thrombin converts fibrinogen to fibrin. When a fibrin clot is broken down by plasmin, the last fragment to be degraded (containing two D and one E subunits) is split, releasing the E fragment and also two D fragments covalently linked together (called “D-dimer”). This D-dimer is produced from fibrin, not fibrinogen degradation. Accordingly, the FDP biomarker can include the presence of one or more of X, D, and E fragments. In one example, the FDP biomarker includes fragment Y; in one example, it includes one or two distinguishable forms of initial plasmin digest product (IPDP). In some embodiment, the provided methods and systems detect a the level of a FDP marker; in one aspect, this FDP marker includes a mixture of at least two FDPs, such as fragments D, E, and D-dimer, and in some aspects further including one or more of fragments X, Y, and IPDP. In one example, the FDP marker includes one, more, or all FDPs detected by the DR-70® ELISA assay. In another example, the FDPs include one or more FDPs described in International Application Publication Number WO 2010/114514 A1. In another example they include one or more FDPs detected by a Fibrinogen ELISA assay using either anti-Fibrinogen polyclonal or multiple monoclonal antibodies.
“C-reactive protein” is also known as “hsCRP”, or “CRP,” and is a marker of the reactant plasma protein component of the inflammatory response. CRP is a protein produced by hepatocytes as part of the non-specific acute phase response to inflammatory conditions. It is used to diagnose and monitor a wide variety of infectious diseases.
“Heat shock protein 70” is also known as“HSP70” “HSP73” “HSPA8” Other family members include HSP 70-1, HSP 70-2, HSP 70-4, HSP 70-4L, HSP 70-5, HSP 70-6, HSP 70-7, HSP 70-8, HSP 70-9, HSP 70-12a, HSP 70-14. Increased levels are found during conditions in which cells are exposed to stress. Thus, HSP70 is among the cellular stress biomarkers.
“Cytomegalovirus” “CMV” is a part of the herpes family of viruses. Other family members include herpes simplex virus type 1 (HSV-1 or HHV-1) and herpes simplex virus type 2 (HSV-2 or HHV-2), varicella zoster virus (VZV), human herpesvirus (HHV)-6, HHV-7, and HHV-8. The biomarker detected for CMV includes CMV antibody (CMV-Ab).
“Urokinase” is also known as urokinase plasminogen activator (uPA or u-PA), urokinase-type plasminogen activator, urinary plasminogen activator, cellular plasminogen activator, double-chain urokinase-type plasminogen activator, two-chain urokinase-type plasminogen activator, urinary esterase A, or EC 3.4.21.73 (International Union of Biochemistry and Molecular Biology (IUBMB) Enzyme Nomenclature). Urokinase is the principle active ingredient of Abbokinase® and Kinlytic™.
Urokinase was originally isolated from human urine, and is present in several physiological locations, such as in the blood stream and the extracellular matrix. Urokinase is a serine protease and is a member of the urokinase plasminogen activator system (uPAS). Plasminogen is one of the primary physiological substrates of urokinase. Plasminogen is an inactive form (zymogen) of the serine protease plasmin Activation of plasmin triggers a proteolysis cascade that, depending on the physiological environment, may participate in thrombolysis or extracellular matrix degradation. Other forms of urokinase, including “low molecular weight urokinase” (which has the amino terminal 125 amino acids deleted) and other variants have been reported. See Orsini et al. (1991, Eur. J. Bioch. 195:691-97), Liu et al. (2002, Circ. Res. 90:757-63), Tang et al. (1997, Prot. Express. Purif. 11:279-83), Winkler et al. (1986, Biochem. 25:4041-45) and U.S. Pat. Nos. 5,188,829, 5,219,569, and 5,472,692. As used herein, a “urokinase” of the present disclosure may include those specifically identified herein or in the references incorporated herein by reference, as well as allelic variants, conservative substitution variants, analogs and homologs that are known to one of skill in the art or can be isolated/generated and characterized without undue experimentation following the methods outlined herein or readily available in the art. Fusion proteins that combine parts of a urokinase protein or fragments thereof, as well as fusion proteins of a urokinase protein and a heterologous polypeptide are also included.
Urokinase is synthesized and secreted as a single-chain zymogen (pro-uPA or sc-uPA), which is activated to the active two-chain form (tc-uPA) through cleavage of the Lys158-Ile159 peptide bond after binding to its receptor (uPAR). Activation is brought about by plasmin. When uPA is attached to its membrane-bound receptor (uPAR) it can activate plasminogen to plasmin Plasmin plays an important role in the breakdown of the extracellular matrix (ECM). It has the ability to degrade several ECM components (e.g., fibronectin, laminin, vitronectin, type IV collagen, proteogylcans and fibrin) directly and/or through activation of certain matrix metalloproteases (MMPs). Furthermore, tc-uPA, plasmin and MMPs can release/activate several mitogenic, motogenic and angiogenic growth factors, like VEGF (Vascular endothelial growth factor), HGF (hepatocyte growth factor) and TGF-β (transforming growth factor). The major endogenous inhibitor of the uPA/uPAR system is PAI-1 (plasminogen activator inhibitor 1), which will bind to the active uPA associated with its receptor, followed by the internalization of the complex.
In certain embodiments, urokinase can be used as a biomarker for a number of diseases and conditions, including but not limited to, cancers, arthritis, atherosclerosis, macular degeneration, skin diseases, infection, wound healing, ALS, epilepsy, occluded intravenous or dialysis cannulas, myocardial infarction, and thrombosis, including thrombotic stroke, pulmonary embolism, deep vein thrombosis, and the like.
“Urokinase receptor” is also known as the urokinase-type plasminogen activator receptor (uPAR). uPAR is a membrane-bound, three domain receptor mainly expressed on immune cells, including neutrophils, activated T-cells, and macrophages. See, Huai et al. (2006, Science 311(5761):656-9). The uPAR (CD87) is a glycoprotein of 55-60 kDa which belongs to the Ly-6 family. It lacks a transmembrane domain, and during the maturation process in the endoplasmatic reticulum a glycosyl phosphatidylinositol (GPI) anchor is added to the C-terminal part of the molecule, generating a mature protein of 283 aa. uPAR is linked to the cell membrane via the GPI-anchor, and is thus available for uPA to bind. The uPAR sequence is characterized by the presence of three domains of about 90 aa called D1, D2 and D3, whose tridimensional structure is dictated by disulfide bridges generated by a highly conserved pattern of cysteine residues. The high affinity binding of uPAR to uPA requires the tridimensional cooperation of all three domains.
The uPAR may be released from the membrane following the cleavage of the GPI anchor, giving rise to the soluble uPAR (suPAR); moreover, both uPAR and suPAR may be cleaved in the linker region between the D1 and D2 domains producing D1 and D2D3 fragments incapable of binding uPA. Intact or cleaved suPAR variants have been identified and measured in tissues and body fluids, and plasma of patients affected by cancer often showing an increased level of suPAR, thought to derive from the uPAR cleavage on malignant cell membranes.
uPAR and its ligand are involved in numerous physiological and pathological pathways which include the plasminogen activating pathway, regulation of pericellular proteolysis, modulation of cell adhesion, migration and proliferation through interactions with proteins present in the extracellular matrix, and the inflammation process. suPAR may regulate uPAR/uPA actions through competitive inhibition of uPAR. suPAR can also be a chemotatic agent promoting the immune response. The plasma level of suPAR may reflect immune activation and is increased in several infectious diseases, such as HIV-1-infection, malaria, tuberculosis, Streptococcus pneumonia bacteraemia, sepsis, pneumococcal pneumonia and bacterial and viral CNS infection. Furthermore, high suPAR levels are associated with increased inflammation, disease progression and fatal outcome.
As used herein, a “urokinase receptor” of the present disclosure may include those specifically identified herein or in the references incorporated herein by reference, as well as allelic variants, conservative substitution variants, analogs and homologs that are known to one of skill in the art or can be isolated/generated and characterized without undue experimentation following the methods outlined herein or readily available in the art. Fusion proteins that combine parts of a urokinase receptor protein or fragments thereof, as well as fusion proteins of a urokinase receptor protein and a heterologous polypeptide are also included.
The term “mammal” or “subject” refers to such organisms as mice, rats, rabbits, goats, horse, sheep, cattle, cats, dogs, pigs, more preferably monkeys and apes, and most preferably humans. In some embodiments, the subject is a human, and the test or biological sample, which can be a test sample or a control sample, used is a bodily fluid or bodily tissue.
The term “bodily fluids” as used herein include circulating and non-circulating fluids. Examples of circulating fluids include blood, CSF, and lymph fluid. Examples of non-circulating fluids include synovial fluid.
The bodily fluid is selected from the group consisting of whole blood, blood fractions, blood components, plasma, platelets, lymph fluid, saliva, serum, gastric juices, bile, cerebrospinal fluid (CSF), bone marrow, tears, milk, organ tissue, nervous system tissue, non-nervous system tissue, muscle tissue, biopsy, necropsy, fat biopsy, fat tissue, cells, feces, placenta, spleen tissue, lymph tissue, pancreatic tissue, bronchoalveolar lavage (BAL), synovial fluid and urine. Most the body fluid is blood.
Biomarkers in a biological sample can be measured by a variety of methods, including, but not limited to, a method selected from the group consisting of chromatography, immunoassay, enzymatic assay, and spectroscopy; the biomarker can be directly or indirectly detected.
“Marker level” means the amount of the marker in the sample, and refers to units of concentration, mass, moles, volume, concentration, or other measure indicating the amount of marker present in the sample.
The chromatographic method used can be high performance liquid chromatography (HPLC) or gas chromatography (GC). The spectroscopic method used can be, for example, ultraviolet spectroscopy (UV or UV/Vis spectroscopy), infrared spectroscopy (IR), or nuclear magnetic resonance spectroscopy (NMR).
The immunoassay preferably detects a (at least one; one or more) biological marker selected from the group consisting of CRP, FDP, HSP70 and anti-CMV Ab. Preferably, the immunoassay detects the biomarker in the test sample using anti-marker antibodies or other immunologically active molecules. The immunoassay can be an enzyme-linked immunosorbant assay (ELISA). FDP can be measured using the ELISA referred to as DR70®. FDP can also be measured by a Fibrinogen ELISA using either anti-Fibrinogen polyclonal or multiple monoclonal antibodies.
The term “control level of a biomarker” refers to the levels of biomarker in a population of normal subjects. The subject under assessment and the control subjects are of the same species (e.g., a human subject is being assessed and the control subjects are also humans).
As used herein, “significant” coronary artery disease (CAD) refers to CAD having one or more lesions with greater than or equal to (≧) 50% coronary stenosis, as determined angiographically. Thus, “insignificant” or “non-significant” CAD refers to CAD with no coronary stenosis greater than or equal to (≧) 50% (i.e., only coronary stenosis of less than (<) 50%), as determined angiographically.
Provided are diagnostic, prognostic, and predictive methods and systems (e.g., kits) for determining risk of adverse cardiovascular outcomes in subjects, such as humans. In one embodiment, the methods and systems detect or predict coronary artery disease (CAD) or related disease, or the risk of developing CAD or related disease, in the absence of known disease in mammals. In another embodiment, the methods and systems detect or predict an adverse effect of CAD, such as myocardial infarction (MI), e.g., acute MI (AMI) or death, such as within a given period of time, such as a year following performance of the methods, such as methods for assessing increased probability of AMI. Thus, the methods may be performed on a subject known to have or suspected of having CAD, e.g., significant or insignificant CAD, a subject not presenting with any symptoms of CAD, having stable CAD, or one having had a recent acute coronary syndrome (ACS), including one who has not had a MI event within a recent time period, such as within 30 days. In some aspects, the methods are useful in identifying subjects presenting with known CAD and for whom the probability of undergoing a significant adverse cardiovascular outcome, such as a plaque rupture, is elevated. The assay also has utility in identifying subjects from the general population without a prior diagnosis of CAD who are at an increased risk of an adverse cardiac outcome, or for assessing increased risk (probability) of myocardial infarction, death, or stroke in a mammal.
The methods generally involve detecting or measuring the presence, absence, or levels of a plurality of biomarkers in the subject, generally in a test biological sample obtained from the subject. In some aspects, the levels of the plurality of biomarkers, for example, in the aggregate, indicate a risk of an adverse cardiovascular outcome, such as those described above, in the subject.
In one aspect, the methods include a step of providing or obtaining the biological sample for use in the methods. The sample can be any biological sample type, such as from a cell, tissue, or body fluid, and generally is a sample derived from blood, such as whole blood, blood fractions, blood components, plasma, platelets, or serum. Other exemplary sample types include cerebrospinal fluid (CSF), bone marrow, urine, tears, milk, lymph fluid, organ tissue, nervous system tissue, non-nervous system tissue, muscle tissue, biopsy, necropsy, fat biopsy, fat tissue, cells, feces, placenta, spleen tissue, lymph tissue, pancreatic tissue, bronchoalveolar lavage (BAL), and synovial fluid.
The plurality of biomarkers includes at least two biomarkers and generally includes one or more thrombosis biomarkers, which generally includes an FDP marker. As described above, the FDP marker typically is a mixture of at least two FDPs, such as fragments D, E, and D-dimer, and in some aspects further including one or more of fragments X, Y, and IPDP, such as one, more, or all FDPs detected by the DR-70® ELISA assay or FDPs described in International Application Publication Number WO 2010/114514 A1. In another example FDP can be measured by a Fibrinogen ELISA that uses anti-Fibrinogen polyclonal or multiple monoclonal antibodies. The panel of biomarkers generally also includes at least one inflammatory (inflammation) biomarker, at least one autoimmune disease or cellular stress biomarker, and in some cases an infection biomarker, or a combination thereof. Exemplary inflammation biomarkers include C-reactive protein (CRP) gene products, such as CRP protein. Exemplary cellular stress biomarkers include Heat Shock Protein 70 (HSP70) gene products, such as HSP70 proteins. In some embodiments, the panel includes a thrombosis biomarker, an inflammation biomarker, and an autoimmune disease or cellular stress biomarker, and in some cases, a thrombosis biomarker, an inflammation biomarker, and a cellular stress marker; in some aspects, it further includes an infection biomarker.
Thus, in particular embodiments, the method comprises measuring the biomarkers CRP and an FDP marker; measuring CRP, FDP marker and HSP70; CRP, FDP marker, and anti-CMV Ab or measuring CRP, FDP marker, HSP70 and anti-CMV Ab to determine risk assessment of adverse cardiac outcome in a subject.
In one aspect, the methods include the steps of measuring a level of at least two biomarkers (HSP70, CRP, FDP and/or anti-CMVAb) in the sample from the mammal (referred to as a test biological sample); (b) comparing the level of the biomarkers measured in the test sample with control level for each; and (c) determining if the level of the two or more biomarkers are significantly different that that of each control biomarker level, wherein if the level of each of the two or more biomarkers is significantly greater than their respective control levels, the individual is at increased risk.
In one embodiment, the method measures levels of CRP and an FDP marker. In another embodiment, the method measures levels of CRP, an FDP marker and HSP70. In an alternative embodiment, the method measures levels of CRP, an FDP marker and anti-CMV Ab. In an alternative embodiment, the method measures levels of CRP, an FDP marker, HSP 70 and anti-CMV Ab.
In another embodiment, the method measures the level of HSP70, C-reactive protein (CRP), an FDP marker, and/cytomegalovirus (CMV) antibody by providing a bodily fluid; contacting the homogenate with an biomarker-specific binding reagent under conditions that allow binding of the reagent to HSP70, C-reactive protein (CRP), an FDP marker, and/or anti-cytomegalovirus antibodies, if present, to form a complex; and detecting HSP70, CRP and an FDP marker and anti-cytomegalovirus antibodies, if any, in said subject biological sample by its immunoassay.
In some examples, the risk of the given adverse outcome is deemed increased, such as by 2, 3, 4, 5, 6, or more times, if the levels are higher than control levels, or significantly higher, or a particular degree higher, e.g., deemed elevated (compared to a situation where the levels were not as such). In one example, the FDP marker is elevated if greater than 1 microgram per milliliter. In one example, the CRP gene product is elevated if greater than three milligrams per liter of sample. In one example, the HSP70 gene product is elevated if detected. In one example, the level of HSP70 gene product is elevated or positive if greater than about 0.313 nanograms per milliliter of sample.
In some aspects, the methods include providing a homogenate of bodily tissue or other biological sample and contacting the homogenate or sample with an biomarker-specific binding reagent under conditions that allow binding of the reagent to the biomarker, if present, to form a complex. In some aspects, detecting the biomarkers, if any, in the biological sample by its immunoassay. In this embodiment, a reagent can be one that binds to one biomarker or multi-reagents, each of which binds to a different biomarker or can bind to more than one biomarker. Thus, the levels of biomarkers can be measured by an immunoassay. Preferably, the immunoassay detects the biomarker in the test sample using anti-marker antibodies. The immunoassay can preferably be an enzyme-linked immunosorbant assay (ELISA). In one embodiment, the ELISA for the FDP marker is DR70®. DR70® is a diagnostic cancer test cleared by the USFDA for monitoring colorectal cancer DR70® measures the FDP marker levels produced from multiple pathways, unlike other FDP assays which only measure one pathway or one pathway product. In other examples, FDP products can be measured using polyclonal anti-Fibrinogen antibodies and/or monoclonal anti-Fibrinogen antibodies, typically multiple monoclonal antibodies, such as by a Fibrinogen ELISA containing either polyclonal anti-Fibrinogen antibodies or multiple monoclonal anti-Fibrinogen antibodies.
In some embodiments, the CRP biomarker (e.g., CRP protein) is measured using a high-sensitivity CRP (hs-CRP) assay, such as the assays described by Roberts et al., Clinical Chemistry, 46:4, 461-68 (2000), those described by Shine B, et al., Clin Chim, Acta, 1981; 117: 13-23, the BNII automated system commercially available from Dade-Behring Inc., and/or rate nephelometry (Behring NA latex CRP; Behring, Germany) and/or the test available from GenWay Biotech., Inc., catalog number 40-052-115042.
In some embodiments, the levels of at least two biomarkers are compared with control levels of such biomarkers, such as the level of their respective predetermined values (control value). In preferred embodiments, the predetermined value is indicative of a normal cardiac condition.
This predetermined value can be determined using the known methods or methods described herein, and can be specific for a particular patient or generic for a given population. In one embodiment, the control biomarker level (control level for a biomarker) is a level (or a range of levels) for a biomarker (i.e., FDP marker, CRP, HSP70, anti-CMV Ab) in a population of healthy subjects (subjects who do not have CAD, such as subjects with <20% coronary stenosis).
The predetermined (control) value is preferably obtained from a human of approximately the same age as the subject being assessed. (from whom the biological sample, also referred to as the test sample) is obtained. Additional characteristics, such as gender, ethnicity, smoking history, weight/other condition (e.g., diabetes and cardiovascular risk factor) can also be taken into consideration. In certain embodiments, the predetermined value may have been established by prior measurement of the particular patient's marker levels, such as when the patient had cardiac symptoms (e.g., chest pain) without prior history and/or marker levels in patients with confirmed CAD.
In a further embodiment, the method is a method of treating a subject, comprising determining whether a subject has increased probability of having adverse cardiovascular outcome, and selecting a particular treatment course if the subject has increased probability of having adverse cardiovascular outcome. The prediction of an increased probability of an adverse cardiovascular outcome can be in a subject presenting symptoms of CAD, or in one who does not so present.
Also provided are systems, e.g., kits, for use in the methods, such as kits including a plurality of agents that specifically bind to and/or detect the plurality of biomarkers, in any combination as described above. Kits useful in the methods provide cost-effective and rapid tests that can be used to assess the probability of adverse cardiac outcome, among other cardiac conditions, acute myocardial infarction (AMI). The kits comprise at least one biomarker specific to one of the two or more biomarkers to be assessed in a biological sample. For example, a kit may comprise a specific biomarker that detects FRP (e.g., and a specific biomarker that detects CRP).
In addition, in certain embodiments, the provided diagnostic methods are useful for assessing the probability of having or of developing CAD before symptoms occur (in persons who do not present with CAD; persons not known to have CAD), or assessing risk of myocardial infarction or death in persons with known CAD, whether the severity of coronary stenoses is deemed to be significant or non-significant. In addition, the methods and compositions can be used to monitor the effectiveness of therapeutic interventions designed to relieve ischemia and heart failure. Some embodiments for monitoring include testing the subject during or after therapeutic intervention at intervals of 3 months, 6 months, or one year, as needed.
Also provided are methods of treatment, including performing the diagnostic or prognostic methods as described and subsequently treating, discontinuing treatment, or altering treatment, of the subject, e.g., based on the results of the assay. In some aspects, the methods further include first treating the subject.
In some embodiments, the methods include statistical analyses, including risk assessment algorithms. In one example, the provided methods and systems are able to discriminate between individuals who will or are more likely to have a given outcome, e.g., AMI or death, and those who will not or are more likely not to have such an outcome, for example, within a given time period.
In some aspects, using well-known statistical analysis methods, hazard ratios (HRs) are calculated, e.g., to represent the relationship between one or more given value(s) or covariate(s), such as a particular level of one or more biomarkers or that one or more biomarkers is deemed elevated or positive as described herein, and a particular outcome, endpoint, or event, such as the occurrence of death or AMI. Thus, the HR describes the risk of occurrence of the outcome, event, or endpoint associated with the value(s) or covariate(s).
In one aspect, the methods include use of a receiver operating characteristic (ROC) curve and the probabilistic interpretation of the area under the ROC curve (AUC; C-statistics). An ROC curve is a plot of the sensitivity of a given test or prediction model (plotted on the y-axis) versus the test or model's false-positive rate (FPR; 1-specificity) (plotted on the x-axis). Each point on the graph is generated by using a different cut-point. In some examples, the cut-point is the concentration or amount of a given biomarker, at or above which the biomarker is deemed “elevated” in the sample. The AUC (C-statistics) is the area under the plot for all possible cut-off values. Thus, the ROC curve allows direct visual comparison of two or more tests on a common set of scales at all possible cut-points. A test (e.g., a risk prediction model) with a C-statistics of 1.0 is perfectly accurate (because the sensitivity is 1.0 when the FPR is 0.0); a test with a C-statistics of 0.0 is perfectly inaccurate. Thus in some embodiments, utilizing ROC curves, C-statistics are generated and compared for risk prediction models, such as those using the biomarkers, when individual biomarkers are added, as well as when subsets of biomarkers are being evaluated. Overall, the closer the C-statistics is to 1.0, the better the risk prediction model.
The following examples are offered to illustrate but not to limit the invention.
This example demonstrates that determining an aggregate biomarker risk score, including levels of C-reactive protein (CRP), a fibrin and fibrinogen degradation product (FDP) marker (including a mixture of multiple FDPs), and Heat Shock Protein 70 (HSP70), can assess or indicate future risk of adverse events in subjects. Cytomegalovirus antibody (anti-CMV Ab) and antibody to Heat Shock Protein 60 (anti-HSP60) also were assessed. CRP was measured using a high-sensitivity CRP (hs-CRP) assay (GenWay Biotech., Inc., catalog number 40-052-115042). The FDP marker was measured using the DR-70® ELISA assay,
Methods:
1500 subjects were selected in a case-control study from the Emory Cardiology Biobank, a registry of patients undergoing cardiac catheterization; included those: (1) with angiographic CAD who suffered death, MI at 2 years of follow-up after enrollment (n=200 subjects); (2) with angiographic CAD without MI or death (n=800) of which 300 subjects underwent revascularization during 2 years of follow up after enrollment; and (3) with non-significant CAD based on angiography (n=500). Groups were matched for age, gender and cardiovascular risk factors using propensity scoring (Rosenbaum, P. R. and Rubin, D. B., Biometrika, 1983, 70(1), 41-55; http://en.wikipedia.org/wiki/Propensity_score_matching). Serum biomarkers were measured using ELISA (GenWay® Inc.). Cox proportional hazard survival analyses were performed with models further adjusted for age, BMI, sex, race, smoking, diabetes, and hypertension. Data were analyzed as continuous variables and with cut points assigned based on accepted values.
Results:
Levels of CMV antibody and anti-HSP60 were not significantly associated with any outcomes. For primary outcomes of death and MI at two years, with adjustments for standard cardiovascular risk factors, the association for each biomarker modeled continuously demonstrated a hazard ratio (HR) of 1.55 (p<0.0001). Modeling with cut points revealed hazard ratios of 1.89 (p<0.001) for CRP>3.0 mg/L; HR of 1.42 (p=0.005) for HSP70 when detectable; and HR of 2.04 (p<0.001) for FDP>1.0 μg/ml. HRs for the primary outcome using categorical risk scores calculated using all 3 significant biomarkers in aggregate revealed 1.68 (p=0.008) for 1 biomarker, 2.64 (p<0.0001) for 2 biomarkers, and 3.76 (p<0.0001) for 3 biomarkers elevated. These results provided the basis for a scoring system and for an aggregate score.
The results showed that the measurement, particularly in the aggregate, of levels of CRP, an FDP marker, and HSP70, is a strong predictor of future risk of death and MI in patients without known CAD.
An additional study was carried out, with four patient groups: Cohort A—angiographically confirmed significant CAD (≧50% coronary stenosis)—with MI or death; Cohort B—Angiographically confirmed significant CAD without MI or death; Cohort C—Angiographically confirmed insignificant CAD (<50% coronary stenosis as determined angiographically) with MI or death; and Cohort D—Angiographically confirmed insignificant CAD (<50% coronary stenosis as determined angiographically) without MI or death —, 3,800 subjects total. 1,500 subjects were used in an initial testing study; 2,300 subjects were used in a subsequent validation study.
Blood was collected for sampling, all drawn prior to catheterization. Presence of severity and coronary artery disease was documented with angiograms. Data collection period was present, with mean follow-up of 2.75 years. The serum levels of CRP, HSP70 antigen, FDP marker (as described above), and CMV antibody were measured. CRP was measured using a high-sensitivity CRP (hs-CRP) assay, as described in (GenWay Biotech., Inc., catalog number 40-052-115042). Table 3, below, summarizes baseline demographics of the subjects by group.
Cox proportional hazard survival analyses were performed with models further adjusted for age, sex, race, smoking, diabetes, and hypertension. CRP was considered “elevated” if greater than 3.0 mg/L. HSP70 was considered “elevated” when detectable. The FDP marker was considered “elevated” when greater than 1.0 microgram/mL.
As shown in
As shown in
A detailed summary of results is presented in Table 4, below, with numbers listed according to median and confidence intervals in parentheses.
†Adjustment for age, race, gender, BMI, ever smoking, HTN, diabetes, aspirin use, statin use, gensini score, hyperlipidemia, and eGFR
Using ROC curves, C-statistics were generated and compared for risk prediction models using the biomarkers versus traditional risk factors (base model). As shown in Table 5, below, addition of the three bioamarkers (FDP marker, HSP70, and CRP) to traditional risk factors improved the C-statistic, demonstrating the utility of methods provided herein for assessing risk of cardiovascular outcomes as compared with available risk assessment tools.
†CRP considered elevated above 3.0 mg/L, HSP 70 considered elevated when detected (cut at zero), FDP considered elevated above 1.0 microgram per mL were added to the baseline model.
For patients with significant CAD and patients with insignificant CAD, the percentage patients in each of four groups (those in which 0, 1, 2, or all 3 biomarkers were considered elevated) having a major event (AMI or death) on an annual basis was calculated. The results, shown in
Event-free survival curves, shown in
The results were similar for individuals with non-significant (insignificant) CAD. In this cohort, the risk of an event within 1,200 days was low for patients with zero or one (1) biomarker elevated. The presence of two (2) biomarkers elevated indicated a moderate risk of an event within 1,200 days (20% of participants within this cohort having 2 biomarkers elevated had such an event within 1,200 days post blood draw (20% event rate)). The presence of all three (3) of the biomarkers elevated indicated a high risk of an event within 1,200 days post blood draw. Patients with all three biomarker elevated represented 5% of the cohort with insignificant CAD. 35% of this group had an event within 1,200 days post blood draw (35% event rate).
The results demonstrate that in this study, neither percentage of stenosis (as indicated by comparing
This example demonstrates that a composite risk score of biomarkers of inflammation, thrombosis, and cell stress pathways significantly predicts risk of adverse cardiovascular outcomes. Specifically, determining an aggregate biomarker risk score, including levels of C-reactive protein (CRP), a fibrin and fibrinogen degradation product (FDP) marker (including a mixture of multiple FDPs), Heat Shock Protein 70 (HSP70), and suPAR, can assess or indicate future risk of adverse events in subjects.
3,280 patients (aged: 62±11, 83% white, 32% diabetics, 64% with significant CAD (≧50% stenosis)) undergoing diagnostic angiography were followed for death and/or MI over median 2.3 years. Plasma suPAR (ViroGates A/S, Denmark), serum CRP, HSP-70, and FDP (Firstmark Inc) were measured using ELISA. Severity of CAD was assessed by the Gensini score. Cox proportional survival and C-statistic analyses were performed adjusting for traditional risk factors, ejection fraction, serum creatinine, and Gensini.
Results: Patients with suPAR level ≧3.5 ng/ml (ROC cutoff) had a greater CAD burden (Gensini: 49±68 versus 41±64, p=0.003). Plasma suPAR≧3.5 ng/ml also predicted future death/MI (HR=1.76, p<0.001) after adjustment for all covariates and the 3 biomarkers, CRP, HSP-70, and FDP; the C-statistic improved (0.69 to 0.71, p=0.01). A 4-biomarker aggregate score composed of suPAR, CRP, FDP, and HSP-70 below/above cutoffs significantly predicted risk of death/MI.
Table 6 below shows the Hazard ratios (HRs) from Cox regression models of a study in this example. Annual event rates for death or MI are shown in Table 7, and percentages of total CAD cohort falling into each biomarker subgroup are shown in Table 8.
Demonstrated in this example is the ability to identify a subgroup in a CAD population with a hazard ratio of MI or death of around 7, and an absolute event rate of approximately 22%. These results show that the measurement, particularly in the aggregate, of levels of CRP, an FDP marker, suPAR, and HSP70, is a strong predictor of future risk of death and MI in patients without known CAD. Addition of the 4th biomarker, suPAR, increases the ability of the physician to determine optimal diagnostic and therapeutic approaches to the patient. The 4th biomarker may markedly increase the utility of the aggregate biomarker strategy to design large clinical trials. For example, one could opt to include in a trial a relatively large percent of the total CAD cohort (10%) that is at high risk (15%); or, can opt to study a much smaller cohort (2.5% of the total population), but a cohort with an extremely high risk (22%). Either approach would yield a richer (high event rate) cohort to study compared to the about 3% risk of an unselected CAD cohort. Therefore, use of a 4th biomarker can lead to reduced cost of clinical studies and a shorter period of time than studies using a CAD population with a 3% event rate.
This application claims priority from U.S. Provisional Patent Application No. 61/845,924, filed Jul. 12, 2013, the disclosure of which is incorporated herein by reference in its entirety for all purposes.
| Filing Document | Filing Date | Country | Kind |
|---|---|---|---|
| PCT/US2014/046386 | 7/11/2014 | WO | 00 |
| Number | Date | Country | |
|---|---|---|---|
| 61845924 | Jul 2013 | US |
