DIETARY SUPPLEMENT AND RELATED METHOD

Information

  • Patent Application
  • 20080226744
  • Publication Number
    20080226744
  • Date Filed
    March 31, 2008
    16 years ago
  • Date Published
    September 18, 2008
    16 years ago
Abstract
A composition including a unique combination of fruits, vegetables, herbs, and optionally vitamins, minerals and specialty ingredients. The composition can include a fruit ingredient, a vegetable ingredient and an herbal ingredient, wherein the fruit ingredient is at least one of pomegranate and citrus bioflavonoids, wherein the vegetable ingredient, is at least one of asparagus, lutein, lycopene and watercress, and wherein the herbal ingredient is at least one of basil, oregano and rosemary. The composition can be administered to subjects to correct a dietary deficiency of phytochemicals and other nutrients, improve plasma concentrations of antioxidant nutrients, and increase the activity of genetic mechanisms for DNA repair and stability.
Description
BACKGROUND OF THE INVENTION

The present invention relates to a composition and method for correcting a dietary deficiency, including an inadequacy of phytochemicals, vitamins and minerals.


Many people fail to practice healthy eating habits, such as consuming an adequate quantity and variety of food to meet U.S. Recommended Dietary Allowances. Only 22% of the subjects of a National Cancer Institute Study consumed the recommended daily number of dietary servings of fruits and vegetables—despite the fact that the recommended dietary intake of fruits and vegetables is well-known. For example. The California Daily Food Guide; Dietary Guidelines for California, California Department of Health Services (1990) recommends that each person consume at least five to nine servings of fruit and vegetables per day, including one serving of a vitamin A-rich deep green or dark orange fruit or vegetable, and at least one serving of a vitamin C-rich fruit or vegetable. Additionally, it is well reported that each person should consume at least 3 servings per week of vegetable protein in the form of legumes, nuts, or seeds. Some researchers suggest that a target of 400 grams (13 ounces) of fruits and vegetables is a sensible goal for the optimal quantity to be consumed daily. In terms of variety, it is recommended that persons should eat at least three different colors of fruits and vegetables daily.


The benefits of consuming a sufficient amount and variety of fruits and vegetables are many. For example, consuming fruits and vegetables has been shown to reduce the risk of a variety of degenerative diseases. In a prospective cohort study of 41,837 postmenopausal women, the association of fruit and vegetable consumption with lung cancer risk was investigated. The researchers found that the risk of lung cancer was approximately halved when the consumption of fruits and vegetables increased from 24 or less servings to an excess of 48 servings per week. Similarly, the risk of lung cancer was approximately halved when the consumption of green leafy vegetables, including spinach and parsley sources, increased from one or fewer servings to six or more servings per week. Steinmetz, K. et al., “Vegetables, Fruit, and Lung Cancer in the Iowa Women's Health Study,” Cancer Res. 53:536-43 (1993). Another study found that an increased intake of fresh tomatoes (a major source of lycopene) was associated with a pattern of protection for all sites of digestive tract cancer. Stahl, W. et al., “Lycopene: A Biologically Important Carotenoid for Humans?” Arc. Biochem. Biophys. 336:1-9 (1996).


In addition to fruits and vegetables, herbs also provide health benefits. For example, the herb, rosemary, contains antioxidants such as carnosol, which may play a preventive role in cholesterol oxidation. Likewise, the herb, basil is known for its antioxidant activity. Like fruits and vegetables, however, the dietary intake of beneficial herbs is unsatisfactory.


Further research has shown that the typical U.S. diet is lacking in phytochemicals. Phytochemicals generally refer to plant-derived compounds which, when taken daily in combination with vitamins and minerals, provide improved cardiovascular and bone health, an improved antioxidant profile, decreased free radical damage, and overall enhancement of the body's natural defense system.


The typical diet, especially the U.S. diet, includes an inadequate amount and variety of fruits, vegetables and herbs, as well as the phytochemicals and associated antioxidants present in these materials. A typical diet is similarly deficient in necessary vitamins and minerals associated with fruits and vegetables. Although conventional multivitamins can supplement western diets with needed vitamins and minerals, many of these multivitamins fail to provide phytochemicals that target free radicals in the body and thereby improve the antioxidant profile of the supplement.


SUMMARY OF THE INVENTION

The present invention provides a composition including a unique combination of fruit vegetable, and herb dehydrates, concentrates, or extracts; and optionally vitamins, minerals and specialty ingredients to correct a dietary deficiency of those materials.


The composition of the present invention provides substantial health benefits. For example, in one embodiment, it can support the health of people who consume a nutritionally deficient diet; improve antioxidant and nutrient status; replenish serum nutrient and phytochemical levels as a result of inadequate diets to levels associated with decreased risk of certain degenerative disease states; minimize free radical damage that occurs as a result of normal aging processes and exposure to environmental stresses; and/or improve the status of specific biomarkers indicative of optimal health, namely homocysteine, lipid byproducts, mineral status and glutathione peroxidase.


In a more specific embodiment, the composition of the present invention can provide p-carotene, a-lipoic acid, selenium, and vitamins C and E, which improve the antioxidant profile of a person. Increased levels of folic acid and vitamins E target and improve cardiovascular health. Calcium, magnesium, and vitamin D targets and improves bone health. B vitamins improve energy metabolism. The compositions according to the invention can provide 100% of the U.S. Recommended Daily Intake of all vitamins and most minerals. The composition also can provide a variety of phytochemicals to produce a diverse antioxidant profile.


In an even more specific embodiment, the composition can include a combination of fruit, vegetable and herbal ingredients, wherein the fruit ingredients are selected from acerola, apple, blueberry, citrus bioflavonoids, cranberry, grape skin, plum, and pomegranate; wherein the vegetable ingredients are selected from asparagus, alfalfa, brassica, kale, lutein, lycopene, and watercress; and wherein the herbal ingredients are selected from basil, oregano, parsley, sage and rosemary. These ingredients can be concentrated, for example they may be extracted from raw ingredients. Optionally, the fruit ingredients, vegetable ingredients and herbal ingredients can be present in the composition in a ratio of about 3.5:1:1 by weight. Specialty ingredients, such as alpha lipoic acid and inositol can be added to the composition.


In yet another embodiment, the composition can include at least one fruit ingredient selected from the group consisting of citrus bioflavonoids and pomegranate, and optionally at least one of acerola, apple, blueberry, cranberry, grape skin, plum and raspberry; at least one vegetable ingredient selected from the group consisting of asparagus, lutein, lycopene, and watercress, and optionally at least one of alfalfa, brassica, and kale; and at least one herbal ingredient selected from the group consisting of basil, oregano and rosemary, and optionally at least one of parsley and sage.


In another embodiment, a method is provided for enhancing the immune system, as well as treating and/or reducing die risk of DMA damage of the human body comprising administering an effective amount of a composition including at least one fruit ingredient selected from the group consisting of citrus bioflavonoids and pomegranate, and optionally at least one of acerola, apple, blueberry, cranberry, grape skin, and plum; at least one vegetable ingredient selected from the group consisting of asparagus, lutein, lycopene, and watercress, and optionally at least one of alfalfa, brassica, and kale; and at least one herbal ingredient selected from the group consisting of basil, oregano and rosemary, and optionally at least one of parsley and sage.


These and other objects, advantages and features of the invention will be more readily understood and appreciated by reference to the detailed description of the invention and the drawings. It is to be understood that both the foregoing general description and the following detailed description are exemplary and explanatory only and are not restrictive of the invention as claimed.





BRIEF DESCRIPTION OF THE DRAWINGS


FIG. 1 is a graph depicting the effect the composition has on Vitamin C levels.



FIG. 2 is a graph depicting the effect the composition has on beta carotene levels.



FIG. 3 is a graph depicting the effect the composition has on Vitamin B6 levels.



FIG. 4 is a graph depicting the effect the composition has on Vitamin B12 levels.



FIG. 5 is a graph depicting the effect the composition has on Folate levels.



FIG. 6 is a graph depicting the effect the composition has on homocysteine levels.



FIG. 7 is a graph depicting the numbers of genes related to DNA or chromatin maintenance or repair that were modulated by consumption of the composition.



FIGS. 8A and 8B which are a diagram (FIG. 8A) and a graph (FIG. 8B) depicting decreased oxidative stress with treatment using the composition of the present invention as indicated by decreased concentration of 2-hydroxybutarate.



FIGS. 9A and 9B are a diagram (FIG. 9A) and a graph (FIG. 9B) depicting decreased oxidative stress with treatment using the composition of the present invention as indicated by decreased concentration of 5-oxoproline.



FIG. 10 is a graph depicting the change in plasma beta-carotene concentration after treatment.



FIG. 11 is a graph depicting the change in plasma folate concentration after treatment.



FIG. 12 is a graph depicting the change in plasma vitamin B6 concentration after treatment.



FIG. 13 is a graph depicting the change in plasma vitamin B12 concentration after treatment.



FIG. 14 is a graph depicting the change in plasma homocysteine concentration after treatment.



FIG. 15 is a graph depicting the change in DNA damage after treatment.



FIG. 16 is a graph depicting the change in baseline expression activity of genes associated with DNA maintenance genes after treatment.





DETAILED DESCRIPTION OF THE INVENTION
I. Overview

In general, the invention relates to a composition comprising fruits, vegetables and herbs. In one embodiment, the composition can include a fruit ingredient, a vegetable ingredient and an herbal ingredient, wherein the fruit ingredient is at least one of pomegranate and citrus bioflavonoids, wherein the vegetable ingredient is at least one of asparagus, lutein, lycopene and watercress, and wherein the herbal ingredient is at least one of basil, oregano and rosemary. The composition can also be combined with a known therapy that can impact chromatin stability thereby limiting the detrimental effects of such therapy.


The following fruit ingredients also can be present in the composition: acerola, apple, blueberry, cranberry, grape skin, and plum. Further, the following vegetable ingredients also can be present in the composition: alfalfa, brassica, and kale. Finally, the following herbal ingredients also can be present in the composition: sage and parsley.


The composition has a synergistic effect in the treatments discussed herein. Thus, the components of the composition together are more effective that individually. Additionally, the composition modulates, and more specifically as discussed herein up-regulates, genes associated with chromatin stability, examples of which are discussed in the figures and examples.


Example of genes involved in telomere maintenance include, but are not limited to, Ku, Cdc 13 protein, the catalytic subunit EST2, and three other genes, EST1, EST3, EST4/CDC13, MRE11, RAD50, XRS2 (yeast)/NBS1, p53, hTERT, ATM, TRF2, the TERF family of genes.


The composition of the present invention can either treat or reduce the occurrences/risks of chromatin damage, and thus support genome stability, by increasing the expression of genes involved in identifying and correcting damage to DNA as well as associated protein structures (i.e., chromatin). The reduction in the occurrence/risk of chromatin damage includes any statistically significant reduction that correlates to a biological response or outcome. These genes control activities including, but not limited to, repair of base pair mismatches, repair of double strand breaks, or other maintenance, repair or supervisory roles. Most damage is caused by oxidation, nutrient deficiency, radiation or toxins. There are four main types of damage to DNA due to endogenous cellular processes or exogenous insult such as ultraviolet radiation: oxidation of bases [e.g. 8-oxo-7,8-dihydroguanine (8-oxoG)] and generation of DNA strand interruptions from reactive oxygen species, alkylation of bases (usually methylation), such as formation of 7-methylguanine, 1-methyladenine, O6 methylguanine hydrolysis of bases, such as deamination, depurination and depyrimidination, mismatch of bases, due to errors in DNA replication, in which the wrong DNA base is stitched into place in a newly forming DNA strand, or a DNA base is skipped over or mistakenly inserted. There are four major DNA-repair pathways in human cells: mismatch repair, nucleotide-excision repair (NER), base-excision repair (BER), and double-strand-break (DSB) repair. The NER pathway mainly removes bulky DNA adducts. The BER pathway is responsible for removal of oxidized DNA bases that may arise endogenously or from exogenous agents. The DSB pathway is responsible for repairing double-strand breaks caused by a variety of exposures, including ionizing radiation, free radicals, and telomere dysfunction. Examples of such genes include, but are not limited to ERCC, RAD2, RAD6, RAD7, RAD18, RAD23, RAD51, RAD54, CDC7, CDC8, CDC9, MAG1, PHR1, DIN1, DDR48, RNR1, RNR2, RNR3, UB14, repB, repD and APE. These genes are impacted by the composition of the present invention can modulate any of the types of damage disclosed above.


The composition can thus be used to treat diseases associated with DNA repair problems including, but not limited to, xeroderma pigmentosum, Cockayne syndrome, trichothiodystrophy, Werner's syndrome, Bloom's syndrome and ataxia telangiectasia. All of which are associated with improper repair of DNA.


The composition can also be used to affect/modulate the function of mitochondria function-specific genes, examples of such genes are provided in Table 8 below. These genes generally fall into four categories. First, genes for mitochondrial transcription/translation, examples of which include, but are not limited to, MTRF1L, which is involved in mitochondrial translational machinery, GFM2, which is a protein involved in protein elongation, MRPL3, which is a mitochondrial ribosomal protein, TOMM20, which is a central component of the receptor complex responsible for the recognition and translocation of cytosolically synthesized mitochondrial preproteins and together with TOM22 functions as the transit peptide receptor at the surface of the mitochondrion outer membrane and facilitates the movement of preproteins into the TOM40 translocation pore. COX15, which is predominantly found in tissues characterized by high rates of oxidative phosphorylation (OxPhos) involved in heme biosynthesis, POLG2, mtDNA that is replicated accurately by DNA polymerase gamma, and MRPS10, which is part of mitochondrial 28S Ribosomal protein. Second, genes for mitochondrial structure examples of such genes include, but are not limited to, DNMIL, which is critical for maintenance of mitochondrial morphology, OPA1, which is a major organizer of the mitochondria); inner membrane and is required for the maintenance of cristae integrity, MFN1, which is an essential transmembrane GTPase, which mediates mitochondrial fusion (MFN1 acts independently of the cytoskeleton.), BNIP3, which provides regulation of mitochondrial permeability, COX18, which is required for the insertion of integral membrane proteins into the mitochondrial inner membrane and is essential for the activity and assembly of cytochrome c oxidase and plays a central role in the translocation and export of the C-terminal part of the COX2 protein into the mitochondrial intermembrane space, and DNM1L, which functions in mitochondrial and peroxisomal division probably by regulating membrane fission and enzyme hydrolyzing GTP that oligomerizes to form ring-like structures and is able to remodel membranes. Third, miscellaneous mitochondrial proteins examples of such genes include, but are not limited to, WWOX, a tumor suppressor gene, PPIF, for protein folding, CoQ9, 10GB, which is involved in the final steps in the synthesis of CoQ, SLC25A37, which is a mitochondrial iron transporter that specifically mediates iron uptake in developing erythroid cells, thereby playing an essential role in heme biosynthesis, ABCB7, which is involved in the transport of heme from the mitochondria to the cytosol, and SLC25A36, which is a transporter for mitochondria. Fourth, genes for mitochondrial enzymes examples of such genes include, but are not limited to, SDHD, which is part of the respiratory chain, ATPAF1 enzymes which are critical for generation of ATP, NARS2, IARS2, EARS2, LARS2, HARS2, which are enzymes involved in the production of amino acid, ASN, ILE and GLN, LEU and HIS respectively, HIBADH, which is an enzyme providing succinyl coA for TCA cycle, ACADSB, which is an enzyme catalyzing one of the steps in fatty acid beta oxidation, MIB1, which is a E3 ligase necessary for protein ubiquitnation (deletion lethal), BCKDHB and ACAD8, for the generation of succiny Co A for TCA, AFG3L2, which is a AAA protease protecting against oxiative stress, PEO1, which is a DNA helicase, critical for lifetime maintenance of mtDNA integrity and to maintain mtDNA copy number, HK2 (Hexokinase 2), and HADHB, which is involved in fatty acid beta-oxidation.


The composition can also be combined with a known therapy to create a combinatorial therapy. This can primarily be used in instances where the known therapy has known detrimental side effects that impact DNA stability, such as chemotherapeutics and radiotherapeutics. Other compounds can also be used that negatively impact DNA repair and stability.


The invention also relates to a method for correcting a diet-induced deficiency of fruits, vegetables and herbs, and the nutrients present in such materials. The composition of the present invention additionally can contain phytochemicals, vitamins, and minerals known to improve the body's natural defenses against oxidants, free radicals, and diseases.


II. Composition and Method of Manufacture

The composition can include a combination of fruit, vegetable, herbal and other ingredients that provide significant health benefits. The following tables illustrate representative daily amounts of suitable fruits, vegetables, herbs, vitamins, and minerals which can be included in the composition. The dosages and methods of administration can be varied as desired from application to application. For example, Dosage A represents a range of dosages of the respective ingredients that is suitable for purposes of the present, invention. Dosage B represents a dosage of a particular embodiment. The unit “mg” in Tables 1-5 means that that the amount recited is given in the number of, e.g., milligrams, provided in a two-tablets per day dosage, unless otherwise noted, e.g., “JU” is recited. Thus, to determine the amount of a specific ingredient per single tablet, the amount recited in the respective tables must be halved.













TABLE 1







Fruit Ingredient
Dosage A, mg/day
Dosage B, mg/day




















Acerola Powder
50-500 
300



Apple extract
25-1000
50



Citrus Bioflavanoids
25-1000
100



Grape skin extract
25-1000
50



Plum extract
25-1000
50



Cranberry extract
25-1000
50



Pomagranate
5-500
25



Blueberry extract
25-1000
50










The citrus bioflavonoids are commercially available from Access Business Group International LLC of Ada, Mich. This ingredient can be in a concentrate form, and can include, but are not limited to, naringen, hesperidin, narirutin, diosmin, rutin, tangeretin, diosmetin, neohesperidin, nobiletin, and quercetin.











TABLE 2





Vegetable Ingredient
Dosage A, mg/day
Dosage B, mg/day


















Asparagus

25-1000
50


Alfalfa
25-1000
70



Brassica

25-1000
50


Kale
20-1000
75


Lycopene
0.1-100  
2


Lutein esters
0.1-100  
2


NUTRILITE Watercress
5-500
28









NUTRILITE watercress is available from Access Business Group International LLC. The Brassica and/or kale can be in dehydrated, powdered form. As used herein the Brassica ingredient may include any material derived from plants in the Brassicae family, for example, broccoli. The lutein esters used in the composition can be of the type sold under the name Xangold 10% beadlets, which is available from Cognis Nutrition & Health of Cincinnati, Ohio. The lycopene used in the composition can be of the type sold under the name Lycobeads 5%, which is available from H. Reisman Corp. of Orange, N.J.











TABLE 3





Vegetable Ingredient
Dosage A, mg/day
Dosage B, mg/day







Basil extract
25-1000
50


Rosemary extract
25-1000
50


Sage
5-500
25


Oregano extract
25-1000
50


NUTRILITE Parsley
5-500
25









NUTRILITE parsley is available from Access Business Group International LLC. The composition can also include ingredients in addition to the fruit, vegetable and herbal ingredients noted above. For example, suitable vitamins for use in the compositions and methods of the present invention can include, vitamin A, vitamin B1, vitamin B2, vitamin B6, vitamin B12, niacin/niacinamide, pantothenic acid, folic acid, biotin, choline, vitamin C, vitamin D, and vitamin E. Table 4 below includes a suitable vitamin profile.









TABLE 4







Vitamin Profile











Dosage B,


Ingredient
Dosage A, mg/day
mg/day












Vitamin C from Acerola
20-100
60


Powder


Ascorbic Acid (C)
100-700 
440


Vitamin A from Beta Carotene
1000-10,000 IU
7500 IU


Biotin
0.01-4   
0.300


Pantothenic Acid from Cal
 5-300
50


Pan Gran


Choline
10-400
50


Folic Acid
0.01-10  
0.8


Inositol
 5-100
25


Vitamin E
10-5000 IU
150 IU


Mixed Tocopherols
 5-300
50


Niacin/Niacinamide
 5-300
40


Pyridoxine (B6)
10-100
15


Riboflavin (B2)
 1-100
12.75


Thiamine (B1)
 1-100
11.25


Vitamin A from Acetate
100-10,000 IU
2500 IU


Vitamin B12
0.01-50  
0.045


Vitamin D3
10-2000 IU
400 IU


Yeast, Standardized@
 5-350
60


(source of 100% RDA Bs)









In addition to the vitamins listed above, minerals for use in the compositions and methods of the present invention include, for example, boron, calcium, chromium, copper, iodine, magnesium, manganese, molybdenum, potassium, selenium, vanadium, and zinc. Other vitamins and minerals may also be used. Table 5 below includes a mineral profile suitable for the composition of the present invention.









TABLE 5







Mineral Profile











Ingredient
Dosage A, mg/day
Dosage B, mg/day















Calcium
100-2000
750



Chromium
0.01-5   
0.120



Copper
0.01-5   
2



Iodine
0.001-5   
0.15



Magnesium
 10-1000
300



Manganese
1-20
5



Molybdenum
0.001-75   
0.075



Potassium
 5-300
80



Selenium
0.001-5   
0.100



Zinc
1-50
15










With the ingredients of Tables 1-3, and optionally the ingredients of Tables 4-5, the composition of the present invention can provide a significant portion of, and in many cases exceed, the recommended daily requirement for a variety of vitamins and minerals. Tables 6 and 7 below illustrate the potency of the composition, when taken in the above daily amounts, in terms of percentages of the daily requirements for the listed vitamins and minerals.













TABLE 6







Vitamin
Amount/Day
% Daily Value




















Vitamin A (75% as β-
10,000
200%



Carotene), IU



Vitamin C, mg
500
833%



Vitamin D, IU
400
100%



Vitamin E, IU
150
500%



Niacin/Niacinamide, mg
40
200%



Vitamin B6, mg
15
750%



Vitamin B12, mcg
45
750%



Folic Acid, mcg
800
200%



Biotin, mcg
300
100%



Pantothenic Acid, mg
50
500%





















TABLE 7







Minerals
Amount/Day
% Daily Value




















Calcium, mg
750
 75%



Magnesium, mg
300
 75%



Iodine, mcg
150
100%



Potassium, mg
80
 2%



Copper, mg
2
100%



Zinc, mg
15
100%



Manganese, mg
5
100%



Chromium, mcg
120
100%



Selenium, mcg
100
143%



Molybdenum, mcg
75
100%










Additional specialty ingredients which can be used in the composition include, for example, methyl sulfonyl methane (MSM), α-lipoic acid (10 mg/day), catechins, polyphenols, flavanoids, lycopene, lutein, yeast, inositol, and para-aminobenzoic acid (PABA).


The composition of the present invention can be formulated using any pharmaceutically acceptable form of respective fruit concentrates, vegetable concentrates, herb concentrates, phytochemicals, vitamins, minerals, and other nutrients, including their salts. The compositions can be formulated into tablets, powders, gels, or liquids (a tablet, for the purposes of the present invention and as used throughout the application disclosure, refers to any form of a solid oral dosage, including but not limited to tablets, caplets, capsules, powders, etc.). The compositions can be formulated as powders, for example, for mixing with consumable liquids such as milk, juice, water, or consumable gels or syrups for mixing into other liquids or foods. The compositions can also be formulated with other foods or liquids to provide pre-measured compositional foods, for example, single-serving bars. Flavorings, binders, protein, complex carbohydrates, and the like can be added as needed.


According to one aspect of the invention, the composition is administered as three separate tablets, all three of which are administered twice a day; however, the composition may be administered in other forms and unit dosages as desired.


The composition of the present invention will be illustrated by, but is not intended to be limited to, the following examples.


EXAMPLE 1

Three tablets may be prepared to provide a) fruit, vegetable and herbal ingredients, b) vitamins and c) minerals. The first tablet includes the fruit, vegetable and herbal ingredients of Tables 1-3. The amount of each ingredient in this first tablet is half of the amount listed in the Dosage B of the Tables, as the table-listed amount is the amount present in two such tablets. The first tablet may also include carriers and other tableting aids such as silicon dioxide, magnesium oxide, calcium carbonate, croscarmellose sodium, microcrystalline cellulose and magnesium stearate in amounts that may be varied for purposes well known to those of skill in the art.


The second tablet includes vitamins of Table 4. The amount of each ingredient in this second tablet is half of the amount listed in the Table, as the table-listed amount is the amount present in two such tablets. The second tablet may also include carriers and other tableting aids such as microcrystalline cellulose, calcium carbonate, croscarmellose sodium, magnesium stearate, and silicon dioxide.


The third tablet includes minerals of Table 5. The amount of each ingredient in this third tablet is half of the amount listed in the Table, as the table-listed amount is the amount present in two such tablets. The third tablet may also include carriers and other tableting aids such as microcrystalline cellulose, calcium carbonate, croscarmellose sodium, magnesium stearate, and silicon dioxide.


The three tablets, when administered twice a day, complete the gap in phytochemicals that is present in the typical diet.


EXAMPLE 2

The following examples relate to methods of preparing the above three tablets. The ingredients are the same as those referred to above in Tables 1-5. For purposes of the following examples, however, tablets including the fruit, vegetable and herbal ingredients from Tables 1-3 are referred to as “Tablet 1”; tablets including the vitamin ingredients from Table 4 are referred to as “Tablet 2”; and tablets including the mineral ingredients from Table 5 are referred to as “Tablet 3.” It is noted that other methods for preparing the tablets and other suitable delivery vehicles can be used as desired.


Tablet 1

Mixed tocopherols, D-alpha-tocopherol (succinate), and silicon dioxide (NF fine powder) are passed through a SWECO separator equipped with a 20 mesh screen into a 100 cubic foot PK blender. The ingredients are blended for ten minutes Magnesium oxide (D.C. heavy), Acerola concentrate, citrus bioflavonoids complex, plum extract, apple extract, rosemary extract, basil extract, grape skin extract, cranberry extract, kale powder, asparagus extract, blueberry extract, parsley dehydrate, oregano extract, sage extract, pomegranate extract, and inositol are passed through a SWECO separator equipped with a 20 mesh screen into a 100 cubic foot PK blender. The ingredients are blended for ten minutes.


Lycopene (5%), lutein ester (beadlets), mixed tocopherols, calcium carbonate (granular), croscarmellose sodium and microcrystalline cellulose (silicified) are passed through a SWECO separator equipped with a 20 mesh screen directly into a 100 cubic foot PK blender. The mixture is blended for ten minutes. Next, magnesium stearate (Kosher) is passed through a SWECO separator equipped with a 20 mesh screen directly into a 100 cubic foot PK blender. The ingredients are blended for an additional five minutes. The resulting mixture is discharged into totes or supersacks, and compressed into tablets.


Tablet 2

Acerola concentrate, microcrystalline cellulose (silicified) and alpha lipoic acid are passed through a SWECO separator equipped with a 20 mesh screen directly into a 100 cubic foot P.K. blender. The ingredients are blended for ten minutes. Next, the following ingredients are passed through a SWECO separator equipped with a 20 mesh screen directly into the 100 cubic foot PK blender: thiamine mononitrate (97%), riboflavin, niacinamide, biotin trituration (1%), vitamin B12 (1.1%), calcium pantothenate granular, folic acid, pyridoxine HCl (95%), and choline bitartrate. The ingredients are blended for ten minutes. Next, the following items are passed through a SWECO separator equipped with a 20 mesh screen directly into the 100 cubic foot PK blender; beta carotene (beadlets), vitamin D3 (beadlets), yeast (standardized) and vitamin A (acetate). The mixture is blended for an additional ten minutes.


Next, the following ingredients are passed through a SWECO separator equipped with a 20 mesh screen directly into the 1.00 cubic foot PK blender: ascorbic acid (97%), calcium carbonate (granular), croscarmellose sodium, d-alpha-tocopherol succinate, silicon dioxide (NF fine powder). The mixture is blended for an additional ten minutes.


Next, magnesium stearate (Kosher) is passed through a SWECO separator equipped with a 20 mesh screen directly into the 100 cubic foot PK blender. The mixture is blended for an additional five minutes. The resulting mixture is discharged into totes or supersacks, and compressed into tablets.


Tablet 3

Zinc amino acid chelate, mixed tocopherols and silicon dioxide (NF fine powder) are passed through a SWECO separator equipped with a 20 mesh screen into a 100 cubic foot PK blender. The ingredients are blended for ten minutes. Co-processed alfalfa concentrate/microcrystalline cellulose/calcium carbonate, selenium yeast, microcrystalline cellulose, copper amino acid chelate, manganese amino acid chelate, potassium iodide trituration, chromium amino acid chelate, molybdenum amino acid chelate, brassica dehydrate, watercress dehydrate and croscarmellose sodium are passed through a SWECO separator equipped with a 20 mesh screen directly into a 100 cubic foot PK blender. The ingredients are blended for ten minutes.


Potassium chloride, magnesium oxide (D.C. heavy) and calcium carbonate (granulation) are passed through a SWECO separator equipped with a 20 mesh screen directly into a 100 cubic foot PK blender. The ingredients are blended for ten minutes. Next, magnesium stearate (Kosher) is passed through a SWECO separator equipped with a 20 mesh screen directly into a 100 cubic foot PK blender. The ingredients are blended for an additional ten minutes. Next, magnesium stearate (Kosher) is passed through a SWECO separator equipped with a 20 mesh screen directly into the 100 cubic foot PK blender. The mixture is blended for an additional live minutes. The resulting mixture is discharged into totes or supersacks, and compressed into tablets.


EXAMPLE 3

The clinical study was an independent Review Board-approved, double-blind, placebo-controlled, parallel-groups study.


Subjects

Subjects were 1.20 healthy adult Japanese-Americans in California and Hawaii Subjects were ethnically Japanese (both parents and four grandparents ethnically Japanese) and ate a mostly Japanese diet


Treatment

Subjects took either composition or placebo as directed (12 tablets a day) for 8 weeks. The composition is the same formula as is currently marketed in Japan under the Alticor name of Triple X™. All products were coated and provided in coded foil packs to preserve double-blindedness.


There were four main categories of outcome measures; (1) plasma concentrations of a representative water-soluble antioxidant nutrient [vitamin c], and a representative fat-soluble antioxidant nutrient [beta carotene], (2) plasma concentrations of the “anti-homocysteine triad” vitamin B6, vitamin B12, and folate, as well as plasma concentrations of homocysteine, (3) nutrigenomic mechanisms of genomic stability, and (4) plasma metabolomic profile changes.


Analyses for plasma nutrient and homocysteine concentrations were based on blood samples obtained from 120 subjects (60 treated with Triple X, and 60 treated with Placebo), at baseline, Week 4, and Week 8.


Nutrigenomic analyses were based on blood samples obtained from 14 subjects (7 treated with Triple X, and 7 treated with Placebo) at baseline and Week 2.


Statistics

Plasma nutrient and homocysteine change score results were assessed with independent-groups t-test for between-groups comparisons. A P value smaller than 0.05 was considered significant.


Nutrigenomic data were first analyzed with paired t-tests within the composition-treated group only to identify which from among 44,000 genes measured showed a significant change in expression level following treatment. A P value smaller than 0.05 was considered significant. A Q value (false discovery rate) of 0.4 was used to control for false positive findings. This analysis identified about 2,000 genes, which were then examined for biologically relevant patterns of change.


Results from the clinical study were as follows. Compared to subjects taking Placebo, subjects taking composition showed increased levels of folate, vitamin B6, vitamin B12, and vitamin C, as well as decreased levels of homocysteine, all within 4 weeks of treatment, with results maintained at 8 weeks. Metabolomic analyses indicate decreased oxidative stress. Nutrigenomic analyses indicate increased genomic integrity and tumor suppressor mechanisms, homocysteine metabolism, resistance to oxidative stress and lipid peroxidation.


Clinical interpretation of nutrigenomic data revealed the unexpected finding that about 150 genes [Do you have a listing of the genes?], each known to function to support genomic stability (via chromatin maintenance, damage detection, and repair), were significantly increased in the Triple X group compared to the placebo group. Subsequent analysis of these genes in the Placebo-treated group showed no change following Placebo treatment. Compared to baseline, consumption of the composition of the present invention led to statistically significant increases in the expression of genes related to DNA maintenance, replication, or repair (FIG. 7).


Clinical interpretation of metabolomic data revealed the unexpected findings that consumption of Triple X led to significant decrease increases in 2-hydroxy bury rate, a metabolite related to oxidative stress (FIG. 9), as well as a trend towards a decrease in 5-oxoproline, also a metabolite related to oxidative stress (FIG. 10). This shows that the consumption of the composition can lead to increased plasma concentration of antioxidant nutrients, increased expression of chromatin maintenance and repair genes, decreased homocysteine, and decreased metabolomic indicators of oxidative stress.


EXAMPLE 4

Clinical testing was conducted to confirm the efficacy of the composition of the present invention. It was expected that consumption of the composition would: correct dietary deficiencies of phytochemicals; improve the amount of antioxidants in the body; decrease free radical damage; increase plasma vitamin, mineral and phytochemical concentrations; and improve plasma and systemic antioxidant capacity, among other things.


Inclusion criteria for this study were healthy men and women, from 18 to 80 years of age, who consume fewer than 12 items found on the Recommended Foods Checklist per week. These subjects are selected after administration of a food frequency questionnaire and application of the Recommended Foods Score (RFS). The RFS consists of 23 foods, 14 of which are fruits and vegetables, that when consumed on a weekly basis have been associated with reduced mortality. This was demonstrated in a cohort study of 42,254 women. Those with a mean RFS of 16.0 (highest quartile) had an all-cause mortality relative risk of 0.69 compared to those with a mean RFS of 6.4 (lowest quartile) who have an all-cause mortality relative risk. It was noted that those in the highest quartile consumed significantly more calories (131%), fiber (200%), Vitamin C (230%), folate (181%), and pro-Vitamin A carotenoids (253%) compared to those in the lowest quartile.


The clinical study encompassed a double-blind (i.e. to subjects and investigators) study of 120 subjects over a six-week period. During the six-week trial, subjects were told to consume three tablets, either the composition, or a placebo, twice a day, such as morning and evening. The subjects were tested by taking blood and urine samples and performing the following assays: total polyphenols, plasma ORAC (Oxygen Radical Absorption Capacity), CP450 enzyme induction, cytokinesis block micronucleus assay, comet assay, bioenergetics assay, urinary bile acids, B6, B12, folate, Vitamin C, homocysteine, alpha and gama tocopherols, beta-carotene, C-reactive protein and urinary 8-epi prostaglandins F2α, which were tested at baseline, two weeks, four weeks and six weeks into the study. Improvement, and thus, efficacy of the composition, was measured based on: plasma concentrations of vitamins, minerals and phytochemicals; plasma and systemic antioxidant capacity; detoxification capacity; cellular energy dynamics; genomic stability; other risk factors and subjective effects.


It was expected that the results of the study would show that following six weeks of composition consumption, subjects would have significantly increased plasma levels of alpha tocopherols, B12, B6, folate, Vitamin C, and other antioxidants, which indicates an improvement in the amount of antioxidants in the body and which is associated with a correction of dietary deficiencies in vitamins, nutrients and phytochemicals, and/or a decrease in free radical damage, as well as increased genomic stability (i.e., decreased DNA damage) among other things.


Results from the clinical study were as follows. Compared to subjects taking Placebo, subjects taking the composition showed increased plasma concentrations of Beta Carotene, Alpha-Tocopherol, Folate, and Vitamins B6 and B12. Subjects taking composition also showed significantly reduced homocysteine, as well as decreased DNA damage as indicated by the cytokinesis micronucleus block assay. This shows that the consumption of the composition can increase plasma concentrations of antioxidant nutrients, decrease homocysteine, and decrease DNA damage.


The above descriptions are those of the preferred embodiments of the invention. Various alterations and changes can be made without departing from the spirit and broader aspects of the invention as defined in the appended claims, which are to be interpreted in accordance with the principles of patent law including the doctrine of equivalents. Any references to claim elements in the singular, for example, using the articles “a,” “an,” “the,” or “said,” is not to be construed as limiting the element to the singular.













TABLE 8







ADH5
\alcohol
Removal of S-nitrosoglutathione and
Anti-




dehydrogenase
thus controls its levels as well as levels
Nitrosative



5 (class III),
of nitrosylated proteins. Protects against
stress activity



chi
nitrosative stress. Low amounts of this
gene



polypeptide\“”
enzyme or absence can increase whole




cell nitrosylation and tissue damage and




susceptibility to bacteria.


TXNL1
thioredoxin-
TXNL1 acts as an effector of oxidants or
Anti-oxidant



like 1
a redox sensor
activity gene


TXNRD3
thioredoxin
Thioredoxin reductases (EC 1.6.4.5),
Anti-oxidant



reductase 3
such as TXNRD3, are selenocysteine
activity gene




(sec)-containing flavoenzymes that




maintain thioredoxins, small proteins




that catalyze redox reactions, in the




reduced state using the reducing power




of NADPH, sec residue of TXNRD1




serves as a sensor of reactive oxygen




species.


UHRF2
\ubiquitin-like,
Absence of this gene makes cells more
Anti-oxidant



containing
sensitive to X rays, UV light and
activity gene



PHD and
hydroxyurea



RING finger



domains, 2\“”


VPS8
vacuolar
VPS3, VPS8 and PEP7 genes to rescue
Anti-oxidant



protein sorting
lethal effects of oxidative damage
activity gene



8 homolog (S. cerevisiae)
resulted from the overexpression of




these genes.


PAFAH2
\platelet-
Membrane phospholipids are
Anti-oxidant
Detoxification



activating
susceptible to oxidation, which is
activity gene
activity



factor
involved in various pathological

gene



acetylhydrolase
processes such as inflammation,



2, 40 kDa\“”
atherogenesis, neurodegeneration, and




aging. One enzyme that may help to




remove oxidized phospholipids from




cells is intracellular type II platelet-




activating factor acetylhydrolase (PAF-




AH (II)), which hydrolyzes oxidatively




fragmented fatty acyl chains attached to




phospholipids. Overexpression of PAF-




AH (II) in cells or tissues was previously




shown to suppress oxidative stress-




induced cell death.


ME2
\malic enzyme
The primary role of malic enzyme,
Anti-oxidant



2, NAD(+)-
however, may be to generate reduced
activity gene



dependent,
NADP+ for biosynthesis rather than to



mitochondrial\
form an intermediate of carbohydrate



“”
catabolism. NADPH provides the




reducing equivalents for biosynthetic




reactions and for oxidation-reduction




involved in protection against the toxicity




of ROS


PON2
paraoxonase 2
The encoded protein is ubiquitously
Anti-oxidant




expressed in human tissues, membrane-
activity gene




bound, and may act as a cellular




antioxidant, protecting cells from




oxidative stress. Hydrolytic activity




against acylhomoserine lactones,




important bacterial quorum-sensing




mediators, suggests the encoded protein




may also play a role in defense




responses to pathogenic bacteria.


IVNS1ABP
influenza virus
Protects cells from cell death induced by
Anti-viral



NS1A binding
actin destabilization; Protects neurons



protein
from dendritic spines and actin filaments




damage induced by the actin-




destabilizing cytochalasin B when




overexpressed. May be a component of




the cellular splicing machinery with a




role in pre-mRNA splicing; may mediate




the inhibition of splicing by NS/influenza




virus NS1A protein. Highly present in




neutrophil


ILF3
\interleukin
Nuclear factor of activated T-cells
Anti-viral



enhancer
(NFAT) is a transcription factor required
activity gene



binding factor
for T-cell expression of interleukin 2.



3, 90 kDa\“”
NFAT binds to a sequence in the IL2




enhancer known as the antigen receptor




response element 2. In addition, NFAT




can bind RNA and is an essential




component for encapsidation and




protein priming of hepatitis B viral




polymerase. NFAT is a heterodimer of




45 kDa and 90 kDa proteins, the larger




of which is the product of this gene. The




encoded protein, which is primarily




localized to ribosomes, probably




regulates transcription at the level of




mRNA elongation, required for IL2




mRNA stabilization. Anti-viral activity


SRPK2
SFRS protein
SRPK1 and SRPK2 in HBV replication
Anti-viral



kinase 2
and found that both of them could
activity gene




suppress HBV replication by reducing




the packaging efficiency of the pgRNA




without affecting the formation of the




viral core particles.


PTX3
\pentraxin-
anti-viral activity
Anti-viral



related gene,

activity gene



rapidly



induced by IL-



1 beta\“”


RIPK2
receptor-
Anti-viral response
Anti-viral



interacting

activity gene



serine-



threonine



kinase 2


SMARCE1
\SWI/SNF
Suppression of hepatitis B virus (HBV)
Anti-viral



related, matrix
replication, a causative agent for chronic
activity gene



associated,
hepatitis, is an effective approach to



actin
controlling disease progression. Host



dependent
factors have a significant effect on viral



regulator of
replication efficiency and need to be



chromatin,
better characterized.. Cellular



subfamily e,
transcription modulator SMARCE1 binds



member 1\“”
to HBV core promoter containing




naturally occurring deletions and




represses viral replication.




Transcriptional coactivator cooperating




with nuclear hormone receptors to




potentiate transcriptional activation, he




SWI/SNF chromatin remodeling




complexes are evolutionarily conserved




multimeric enzymatic machines that alter




the nucleosomal structure using energy




derived from ATP hydrolysis (34). Ample




experimental evidence suggests that the




SWI/SNF complexes play important




roles in fundamental cellular processes




such as transcription, replication, and




the repair of chromatin


TLR7
toll-like
TLR7-specific agonists activate
Anti-viral



receptor 7
plasmacytoid DCs (pDCs) and B cells
activity gene




and induce mainly IFN-a and IFN-




regulated cytokines, the natural ligands




of TLR7 and TLR8 were identified as




single-stranded RNA (ssRNA), single




stranded (ss)RNA viruses [either




vesicular stomatitis virus (VSV; a




rhabdovirus) or influenza virus (an




orthomyxovirus)] stimulate type I IFN




responses through TLR7.


ZNF175
zinc finger
OTK18 was copiously expressed in
Anti-viral



protein 175
macrophages following HIV type I
activity gene




infection and diminished progeny virion




production. A mechanism for this




antiretroviral activity was by suppression




of HIV type 1 Tat-induced viral long




terminal repeat promoter activity.


BNIP2
BCL2/adenovirus
Adenovirus E1B 19-kD protein protects
Anti-viral



E1B
against cell death induced by viral
activity gene



19 kDa
infection and certain external stimuli.



interacting



protein 2


CDKN1A
\cyclin-
is an endogenous cellular component in
Anti-viral



dependent
stem cells that provides a molecular
activity gene



kinase
barrier to HIV-1 infection., anti-viral



inhibitor 1A



(p21, Cip1)\“”


CREBZF
CREB/ATF
The neuronal host cell factor-binding
Anti-viral



bZIP
protein Zhangfei inhibits herpes simplex
activity gene



transcription
virus replication.



factor


ELF1
E74-like factor
ELF-1 belongs to a subset of Ets factors
Blood vessel



1 (ets domain
that regulate vascular-specific gene
development



transcription
expression during blood vessel
gene



factor)
development.


NUS1
nuclear
Acts as a specific receptor for the N-
Blood vessel



undecaprenyl
terminus of Nogo-B, a neural and
development



pyrophosphate
cardiovascular regulator. Able to
gene



synthase 1
regulate vascular remodeling and



homolog (S. cerevisiae)
angiogenesis. Its similarity with UPP




synthetase proteins suggests that it may




act as a scaffold for the binding of




isoprenyl lipids and/or prenylated




proteins. Nogo-B receptor localizes with




the ligand Nogo-B during VEGF and




wound healing angiogenesis in vivo,




mediates chemotaxis in a heterologous




expression system and chemotaxis, and




3D tube formation in native endothelial




cells. Thus, identification of this receptor




may lead to the discovery of agonists or




antagonists of this pathway to regulate




vascular remodeling and angiogenesis.


CLIC4
chloride
CLIC4 is involved in formation of the
Blood vessel



intracellular
blood vessel lumen. Blood vessel
development



channel 4
formation. Chloride channel or a
gene




regulator or accessory subunit of other




proteins that could provide the pore-




forming function.


SGPP1
sphingosine-
Sphingosine-1-phosphate (S1P) is a highly
Blood vessel



1-phosphate
bioactive lipid that exerts numerous biological
development



phosphatase 1
effects both intracellularly as a second messenger
gene




and extracellularly by binding to its G-protein-




coupled receptors of the endothelial differentiation




gene family (S1P receptors-(1-5)). Intracellularly,




at least two enzymes, sphingosine kinase and S1P




phosphatase, regulate the activity of S1P by




governing the phosphorylation status of S1P. It is




now well established that S1P is the natural ligand




for specific G protein-coupled receptors (GPCRs),




hereafter referred to as S1PRs. To date, five




members, EDG-1/S1P1, vascular smooth muscle




cells and pericytes to migrate around arteries and




capillaries and properly reinforce




them angiogenesis.


DMTF1
cyclin D
DMP1 is a pivotal tumor suppressor for
Bone health



binding myb-
both human and murine lung cancers.



like
DMP1 is essential for normal postnatal



transcription
chondrogenesis and subsequent



factor 1
osteogenesis-bone


LEMD3
LEM domain
LEMD3 is involved in both BMP (see
Bone Health



containing 3
112264) and TGF-beta (190180)
Activity Gene




signaling, an integral protein of the inner




nuclear membrane, binds Smad2 and




Smad3 and antagonizes transforming




growth factor-beta signaling. Involved in




multiple bone disorders.


MBTPS1
\membrane-
Site-1 protease (S1P) has an essential
Bone Health



bound
function in the conversion of latent,
Activity Gene



transcription
membrane-bound transcription factors to



factor
their free, active form. In mammals,



peptidase,
abundant expression of S1P in



site 1\“”
chondrocytes suggests an involvement




in chondrocyte function. Catalyzes the




first step in the proteolytic activation of




the sterol regulatory element-binding




proteins (SREBPs). Other known




substrates are BDNF and ATF6.


RPS6KA3
\ribosomal
Rsk2 plays an important role in neuronal
Bone Health



protein S6
plasticity. RSK2 is required for
Activity Gene



kinase,
osteoblast differentiation and function.



90 kDa,
Rsk2-null mice develop progressive



polypeptide
osteopenia due to impaired osteoblast



3\“”
function and normal osteoclast




differentiation.


BCAT1
\branched
This gene encodes the cytosolic form of
Cell health



chain
the enzyme branched-chain amino acid
Maintenance



aminotransferase
transaminase. This enzyme catalyzes
Gene



1,
the reversible transamination of



cytosolic\“”
branched-chain alpha-keto acids to




branched-chain L-amino acids essential




for cell growth.


CEPT1
choline/ethanolamine
Cholinephosphotransferase catalyses
Cell health



phosphotransferase 1
the final step in the synthesis of
Maintenance




phosphatidylcholine by the transfer of
Gene




phosphocholine from CDP-choline to




diacylglycerol. The synthesis of




phosphatidylethanolamine by




ethanolaminephosphotransferase occurs




using an analogous reaction. This gene




codes for a




choline/ethanolaminephosphotransferase.




The protein can synthesize either




choline- or ethanolamine-containing




phospholipids. Phosphatidylcholine is a




class of phospholipids called “essential




phospholipids


DSCR1
Down
The DSCR1 (Adapt78) gene is
Cell health



syndrome
transiently induced by stresses to
Maintenance



critical region
temporarily protect cells against further
Gene



gene 1
potentially lethal challenges.


PAPOLA
poly(A)
Polymerase that creates the 3′ poly(A)
Cell health



polymerase
tail of mRNA's. Also required for the
Maintenance



alpha
endoribonucleolytic cleavage reaction at
Gene




some polyadenylation sites.


HSBP1
heat shock
exert cytoprotection and anti-apoptotic
Cell health



factor binding
effects
Maintenance



protein 1

Gene


METAP1
methionyl
Protein synthesis is initiated with a
Cell health



aminopeptidase 1
methionine residue in eukaryotic cells or
Maintenance




a formylated methionine in prokaryotes,
Gene




mitochondria, and chloroplasts. For a




large subset of proteins, the initiator




methionine is cotranslationally removed




before further posttranslational




modification. The proteolytic removal of




N-terminal methionine is catalyzed by a




family of enzymes known as methionine




aminopeptidases (MetAPs).


SGMS1
sphingomyelin
Suppresses BAX-mediated apoptosis
Cell health



synthase 1
and also prevents cell death in response
Maintenance




to stimuli such as hydrogen peroxide,
Gene




osmotic stress, elevated temperature




and exogenously supplied sphingolipids.




May protect against cell death by




reversing the stress-inducible increase in




levels of proapoptotic ceramide.




Required for cell growth


STK39
\serine
STE20 kinases involved in the regulation
Cell health



threonine
of ion homoeostasis and volume control
Maintenance



kinase 39
in mammalian cells
Gene



(STE20/SPS1



homolog,



yeast)\“”


VCL
vinculin
Involved in cell adhesion. May be
Cell health




involved in the attachment of the actin-
Maintenance




based microfilaments to the plasma
Gene




membrane. May also play important




roles in cell morphology and locomotion.


XPNPEP1
\X-prolyl
prolyl aminopeptidase (EC 3.4.11.9) is a
Cell health



aminopeptidase
proline-specific metalloaminopeptidase
Maintenance



(aminopeptidase
that specifically catalyzes the removal of
Gene



P) 1,
any unsubstituted N-terminal amino acid



soluble\“”
that is adjacent to a penultimate proline




residue. Because of its specificity toward




proline, it has been suggested that X-




prolyl aminopeptidase is important in the




maturation and degradation of peptide




hormones, neuropeptides, and




tachykinins, as well as in the digestion of




otherwise resistant dietary protein




fragments, thereby complementing the




pancreatic peptidases. Deficiency of X-




prolyl aminopeptidase results in




excretion of large amounts of imino-




oligopeptides in urine


NCAPD3
\non-SMC
Regulatory subunit of the condensin II
Chomatin



condensin II
complex, a complex which establishes
stability



complex,
mitotic chromosome architecture and is



subunit D3\“”
involved in physical rigidity of the




chromatid axis.


AOF2
amine
a family of multiprotein corepressor
Chromatin



oxidase (flavin
complexes that function through
modification



containing)
modifying chromatin structure to keep



domain 2
genes silent. The polypeptide




composition of these complexes




includes a common core of 2 subunits,




HDAC1 (601241)/HDAC2 (605164) and




the FAD-binding protein AOF2.




functions as a histone demethylase and




transcriptional corepressor, histone




lysine-specific demethylase LSD1




interacts with p53 (191170) to repress




p53-mediated transcriptional activation,




and to inhibit the role of p53 in




promoting apoptosis.


HMGN1
high-mobility
HMGN1 enhances the rate of heat
Chromatin



group
shock-induced chromatin remodeling in
modification



nucleosome
the HSP70 promoter, thereby leading to



binding
an increase in the levels of HSP70



domain 1
transcripts during the early stages of




heat shock induction.


INOC1
INO80
INOC1 defines a subfamily of
Chromatin



complex
SWI2/SNF2 chromatin remodeling
modification



homolog 1 (S. cerevisiae)
proteins. INOC1 displayed ATPase




activity specific to double-stranded DNA




and exhibited activity on isolated human




mononucleosomes. ATP hydrolysis of




double-stranded DNA occurred in a




linear time course with a calculated Km




of 167 microM, similar to that of other




ATPases of the SNF2/SWI2 family.


PCAF
p300/CBP-
Histone acetyltransferase; Functions as
Chromatin



associated
a histone acetyltransferase (HAT) to
modification



factor
promote transcriptional activation. Has




significant histone acetyltransferase




activity with core histones (H3 and H4),




and also with nucleosome core particles.


RBBP4
retinoblastoma
Core histone-binding subunit that may
Chromatin



binding
target chromatin remodeling factors,
modification



protein 4
histone acetyltransferases and histone




deacetylases to their histone substrates




in a manner that is regulated by




nucleosomal DNA. Component of




several complexes which regulate




chromatin metabolism.


RCBTB1
regulator of
May be involved in cell cycle regulation
Chromatin



chromosome
by chromatin remodeling.
modification



condensation



(RCC1) and



BTB (POZ)



domain



containing



protein 1


TOP2B
topoisomerase
essential for mammalian neural
Chromatin



(DNA) II
development; catalyses topological
modification



beta 180 kDa
genomic changes essential for




chromosome segregation, chromatin




reorganization,


TSN
translin
Translin and TRAX have been proposed
Chromatin




to be involved in DNA recombination,
modification




chromosomal translocation and mRNA




transport and translation.


TSNAX
translin-
Translin and TRAX have been proposed
Chromatin



associated
to be involved in DNA recombination,
modification



factor X
chromosomal translocation and mRNA




transport and translation.


TSPYL1
TSPY-like 1
chromatin remodeling factor
Chromatin





modification


UTX
\ubiquitously
Histone H3 methylation at Lys27 (H3K27
Chromatin



transcribed
methylation) is a hallmark of silent
modification



tetratricopeptide
chromatin, dUTX, specifically



repeat, X
demethylates di- and trimethylated but



chromosome\“”
not monomethylated H3K27, dUTX is




intimately associated with actively




transcribed genes


WAPAL
wings apart-
regulates heterochromatin organization;
Chromatin



like homolog
Wapl is a new regulator of sister
modification



(Drosophila)
chromatid resolution


PHC3
polyhomeotic
Component of the Polycomb group
Chromatin



homolog 3
(PcG) multiprotein PRC1 complex, a
modification



(Drosophila)
complex required to maintain the




transcriptionally repressive state of many




genes, including Hox genes, throughout




development. PcG PRC1 complex acts




via chromatin remodeling and




modification of histones;


CDYL
\chromodomain
Proteins encoded by this gene
Chromatin



protein, Y-
superfamily possess a chromodomain, a
modification



like\“”
motif implicated in chromatin binding




and gene suppression, and a catalytic




domain believed to be involved in




histone acetylation.


CENPJ
centromere
structural role for CPAP to maintain
Chromatin



protein J
centrosome integrity and normal spindle
modification




morphology during cell division.


TPK1
thiamin

Cofactor



pyrophosphokinase 1

biosynthesis





gene


RFK
riboflavin

Cofactor



kinase

biosynthesis





gene


VNN1
vanin 1
VNN1 gene product is involved in the
Cofactor




thymus homing of bone marrow cells
biosynthesis




and in late adhesion steps of thymus
gene




homing under physiologic,




noninflammatory conditions.




Recently VNN1 gene upregulation has




been linked to increased HDL level




The product of CD1c gene is expressed




on cortical thymocytes, immature




myeloid dendritic cells, subset of normal




peripheral B cells and activated T cells


P4HA1
\procollagen-
When expressed intracellularly or
Collagen
Tumor



proline, 2-
exogenously delivered, P4HA1
formation
suppressor



oxoglutarate
significantly inhibited tumor growth in
activity gene
activity



4-
mice. Prolyl 4-hydroxylase (EC

gene



dioxygenase
1.14.11.2) plays a central role in



(proline 4-
collagen synthesis. It catalyzes the



hydroxylase),
formation of 4-hydroxyproline in



alpha
collagens by hydroxylation of proline



polypeptide
residues in peptide linkages. The 4-



I\“”
hydroxyproline residues are essential for




the folding of the newly synthesized




procollagen polypeptide chain into triple




helical molecules.


CHST2
carbohydrate
CHST1 and CHST2 contribute to the
Control of



(N-
generation of optimal L-selectin ligands
inflammation



acetylglucosamine-
in vascular endothelial cells at sites of
activity gene



6-O)
inflammation and thus control



sulfotransferase 2
inflammation.


PAPSS1
3′-
3′-phosphoadenosine 5′-phosphosulfate
Detoxification



phosphoadenosine
(PAPS) synthase (PAPSS) catalyzes the
Activity Gene



5′-
biosynthesis of PAPS which serves as



phosphosulfate
the universal sulfonate donor compound



synthase 1
for all sulfotransferase reactions. PAPSS




forms PAPS in two sequential steps.




First inorganic sulfate combines with




ATP to form adenosine 5′-




phosphosulfate (APS) and




pyrophosphate catalyzed by ATP




sulfurylase domain and in the second




step, APS combines with another




molecule of ATP to form PAPS and ADP




catalyzed by APS kinase domain. The




bifunctional PAPSS1 is comprised of




NH2-terminal APS kinase domain




(approximately 1-260 aa), and a COOH-




terminal ATP sulfurylase domain




(approximately 220-623 aa).. Many




different endogenous and xenobiotic




molecules are substrates for the




sulfotransferases; sulfation affects many




different physiological processes,




including: 1) deactivation and




bioactivation of xenobiotics, 2)




inactivation of hormones and




catecholamines, 3) structure and




function of macromolecules, and 4)




elimination of end products of




catabolism. PAPS is the obligate




cosubstrate that is synthesized in




tissues to make available an “activated




form” of sulfate for the sulfation reaction.


PPA2
pyrophosphatase
Inorganic pyrophosphates are generated
Detoxification



(inorganic) 2
as byproducts of many biosynthetic
Activity Gene




reactions, including DNA and RNA




synthesis, fatty acid and amino acid




activation, and cyclic nucleotide




synthesis. Inorganic pyrophosphatases




(EC 3.6.1.1), such as PPA2, maintain




the thermodynamic favorability of these




reactions by catalyzing the hydrolysis of




pyrophosphates into organic




phosphates, which are then exported




across the cell membrane (Curbo et al.,




2006)


RTN1
reticulon 1
In the presence of high RTN-1C levels,
Detoxification




genotoxic drugs become ineffective as a
Activity Gene




consequence of the cytoplasm




translocation of p53 protein, while the




silencing of endogenous RTN-1C results




in the potentiation of the genotoxic drugs




action. Highly present in CNS. CNS




stem cells?


ATRN
attractin
in its natural serum form, it mediates the
Detoxification
mitochondrial




spreading of monocytes that becomes
Activity Gene,
function




the focus for the clustering of

maintenance




nonproliferating T lymphocytes.

activity




Necessary for proper mitochondrial

gene




function and suppress oxidative stress.




Atrn may play a protective role against




environmental toxins


PGK1
phosphoglycerate
Glycolysis enzyme generating 1
Energy



kinase 1
molecule of ATP
Generation


GLS
glutaminase
human platelets. It is the major enzyme
Energy




yielding glutamate from glutamine.
generation




Significance of the enzyme derives from




its possible implication in behavior




disturbances in which glutamate acts as




a neurotransmitter, platelet




glutaminase activity is entirely




represented by the phosphate




dependent glutaminase or glutaminase I,




most probably localized in the




mitochondrial platelet fraction and




classified by kinetic analysis as a kidney-




type form. The following step of the




glutamine metabolizing pathway,




allowing the entrance of the amino acid




skeleton carbons in the Krebs cycle,




might be catalyzed by both glutamate




dehydrogenase and aspartate




transaminase


GLUD2
glutamate
The following step of the glutamine
Energy



dehydrogenase 2
metabolizing pathway, allowing the
generation




entrance of the amino acid skeleton




carbons in the Krebs cycle, might be




catalyzed by both glutamate




dehydrogenase and aspartate




transaminase


MUT
methylmalonyl
In mammalian cells only two enzymes
Energy



Coenzyme A
are known to require cobalamin (vitamin
generation



mutase
B12) as a cofactor: methionine




synthase, which uses methylcobalamin,




and methylmalonyl-coenzyme A (CoA)




mutase, which uses 5′-deoxyadenosyl-




cobalamin (AdoCbl) Methylmalonyl-CoA




mutase (MUT) (EC 5.4.99.2) is a




mitochondrial enzyme that catalyzes the




isomerization of methylmalonyl-CoA to




succinyl-CoA. Methylmalonyl-CoA




mutase occupies a key position in the




pathway converting propionyl-CoA to




succinyl-CoA, with the catabolism of




isoleucine, methionine, threonine, and




valine, as well as of cholesterol, odd




chain fatty acids, thymine, and uracil




leading to propionyl-CoA production.




The enzyme is, therefore, part of a




gluconeogenic pathway for converting




amino acids, lipids, and pyrimidines to




carbohydrates


PPAT
phosphoribosyl
Phosphopantetheine
Energy



pyrophosphate
adenylyltransferase (PPAT) is an
generation



amidotransferase
essential enzyme in Coenzyme A




biosynthesis. Biosynthesis of coenzyme




A (CoA) from pantothenic acid (vitamin




B5) is an essential universal pathway in




prokaryotes and eukaryotes. COASY is




a bifunctional enzyme that catalyzes the




2 last steps in CoA synthesis.


MTHFR
\5,10-
Methylenetetrahydrofolate reductase
Homocysteine



methylenetetrahydrofolate
(EC 1.5.1.20) catalyzes the conversion
metabolism



reductase
of 5,10-methylenetetrahydrofolate to 5-



(NADPH)\“”
methyltetrahydrofolate, a cosubstrate for




homocysteine remethylation to




methionine.


MTR
5-
The remethylation of homocysteine to
Homocysteine



methyltetrahydrofolate-
form methionine is catalyzed by the
metabolism



homocysteine
cytoplasmic enzyme 5-



methyltransferase
methyltetrahydrofolate-homocysteine S-




methyltransferase (EC 2.1.1.13), which




is also called methionine synthase. This




enzyme requires methylcobalamin




(MeCbl), a derivative of cobalamin, or




vitamin B12, for activity.


MTRR
5-
Methionine is an essential amino acid
Homocysteine



methyltetrahydrofolate-
required for protein synthesis and one
metabolism



homocysteine
carbon metabolism. Its synthesis is



methyltransferase
catalyzed by the enzyme methionine



reductase
synthase. Methionine synthase




eventually becomes inactive due to the




oxidation of its cob(l)alamin cofactor.




The protein encoded by this gene




regenerates a functional methionine




synthase via reductive methylation. It is




a member of the ferredoxin-NADP(+)




reductase (FNR) family of electron




transferases.


ADCY7
adenylate
Necessary for proper Eucaryotic signal
Immune health



cyclase 7
transduction in platelets and other blood




associated cells including natural killer




cells, monocytes, and neutrophils


NCKAP1L
NCK-
Expressed only in cells of hematopoietic
Immune



associated
origin.
Health



protein 1-like


ABCB7
\ATP-binding
essential for hematopoiesis
Immune



cassette, sub-

Health



family B



(MDR/TAP),



member 7\“”


AHI1
Abelson
expression of mouse and human AHI1
Immune



helper
was highest in the most primitive types
Health



integration
of normal hematopoietic cells and was



site 1
downregulated during early




differentiation. This indicates that early




precursors of blood cells are likely




present in the peripheral blood.


CD164
\CD164
myeloid cells, T cells, epithelial cells,
Immune



molecule,
bone marrow stroma cells; adhesion
Health



sialomucin\“”
molecule haem progenitor cells to




stroma


CD200
CD200
Normal brain and B-cell lines
Immune



molecule

Health


CD74
\CD74
B cells, macrophages, monocytes, MHC
Immune health



molecule,
class II positive cells



major



histocompatibility



complex,



class II



invariant



chain\“”


CD83
CD83
Activated B cells, activated T cells,
Immune health



molecule
circulating dendritic cells;


CD8A
CD8a
The CD8 antigen is a cell surface
Immune health



molecule
glycoprotein found on most cytotoxic T




lymphocytes that mediates efficient cell-




cell interactions within the immune




system. The CD8 antigen, acting as a




coreceptor, and the T-cell receptor on




the T lymphocyte recognize antigen




displayed by an antigen presenting cell




(APC) in the context of class I MHC




molecules. Cytotoxic T cells (TC cells, or




CTLs) destroy virally infected cells and




tumor cells, and are also implicated in




transplant rejection. These cells are also




known as CD8+ T cells, since they




express the CD8 glycoprotein at their




surface. Through interaction with helper




T cells, these cells can be transformed




into regulatory T cells, which prevent




autoimmune diseases such as




experimental autoimmune




encephalomyelitis


CERK
ceramide
Catalyzes specifically the
Immune



kinase
phosphorylation of ceramide to form
Health




ceramide 1-phosphate. Ceramide 1-




Phosphate, a Mediator of Phagocytosis,




might function as components of a




‘rheostat’ that regulates immune cell




functions, including mast cell




responsiveness, neutrophil and




macrophage priming, chemotaxis, and




survival of many types of immune cells.


CIAPIN1
cytokine
CIAPIN1, a necessary molecule for
Immune



induced
hematopoiesis that mediates
Health



apoptosis
antiapoptotic effects of various



inhibitor 1
cytokines.


CIITA
\calss II,
Highly present in B-lymphocytes. This
Immune health



major
gene encodes a protein with an acidic



histocompatibility
transcriptional activation domain, 4



complex,
LRRs (leucine-rich repeats) and a GTP



transactivator\
binding domain. The protein is located in



“”
the nucleus and acts as a positive




regulator of class II major




histocompatibility complex gene




transcription, and is referred to as the




“master control factor” for the expression




of these genes. Mutations (lack of




fuction) in this gene have been




associated with bare lymphocyte




syndrome type II (also known as




hereditary MHC class II deficiency or




HLA class II-deficient combined




immunodeficiency), increased




susceptibility to rheumatoid arthritis,




multiple sclerosis, and possibly




myocardial infarction.


CLEC10A
\C-type lectin
Probable role in regulating adaptive and
Immune



domain family
innate immune responses. Binds in a
Health



10, member
calcium-dependent manner to terminal



A\“”
galactose and N-acetylgalactosamine




units, linked to serine or threonine.


CPNE3
copine III
copine III were expressed in the more
Immune




immature neutrophil precursors
Health


CPVL
\carboxypeptidase,
CPVL protein expression was induced
Immune



vitellogenic-
during maturation of monocytes into
Health



like\“”
macrophages.


CTNNB1
\catenin
Hematopoietic stem cells (HSCs) have
Immune



(cadherin-
the ability to renew themselves and to
Health



associated
give rise to all lineages of the blood.



protein), beta
Reya et al. (2003) showed that the WNT



1, 88 kDa\“”
signaling pathway has an important role




in this process. Overexpression of




activated beta-catenin expands the pool




of HSCs in long-term cultures by both




phenotype and function, beta-catenin is




essential for fate decisions of skin stem




cells: in the absence of beta-catenin,




stem cells failed to differentiate into




follicular keratinocytes and instead




adopted an epidermal fate


CTSC
cathepasin C
Needed for activity and stability of
Immune




neutrophil-derived serine proteases.
Health


CYFIP2
cytoplasmic
Necessary for T-cell adhesion function
Immune



FMR1

Health



interacting



protein 2


DPP8
dipeptidyl-
involve in immune functions
Immune



peptidase 8

Health


DPP9
dipeptidyl-
involve in immune functions
Immune



peptidase 9

Health


DPYSL2
dihydropyrimidinase-
involved in T-cell polarization and
Immune



like 2
migration.
Health


DUSP5
dual
Mkp5-deficient cells produced greatly
Immune



specificity
enhanced levels of proinflammatory
Health



phosphatase 5
cytokines during innate immune




responses and exhibited greater T-cell




activation than their wildtype




counterparts. However, Mkp5-deficient T




cells proliferated poorly upon activation,




which resulted in increased resistance to




experimental autoimmune




encephalomyelitis. By contrast, Mkp5-




deficient CD4+ (186940) and CD8+




(186910) effector T cells produced




significantly increased levels of




cytokines compared with wildtype cells,




which led to much more robust and




rapidly fatal immune responses to




secondary infection with lymphocytic




choriomeningitis virus. Zhang et al.




(2004) concluded that MKP5 has a




principal function in both innate and




adaptive immune responses.


EDG1
\endothelial
Adaptive immunity depends on T-cell
Immune



differentiation,
exit from the thymus and T and B cells
Health



sphingolipid
travelling between secondary lymphoid



G-protein-
organs to survey for antigens. After



coupled
activation in lymphoid organs, T cells



receptor, 1\“”
must again return to circulation to reach




sites of infection; however, the




mechanisms regulating lymphoid organ




exit are unknown. S1P1-dependent




chemotactic responsiveness is strongly




upregulated in T-cell development




before exit from the thymus, whereas




S1P1 is downregulated during peripheral




lymphocyte activation, and this is




associated with retention in lymphoid




organs.


FCRL5
Fc receptor-
May be involved in B-cell development
Immune



like 5
and differentiation in peripheral lymphoid
Health




organs and may be useful markers of B-




cell stages. May have an




immunoregulatory role in marginal zone




B-cells.


FER
fer (fps/fes
Fps/Fes modulates the innate immune
Immune



related)
response of macrophages to LPS, in
Health



tyrosine
part, by regulating internalization and



kinase
down-regulation of the TLR4 receptor



(phosphoprotein
complex. Fps/Fes and Fer are members



NCP94)
of a distinct subfamily of cytoplasmic




protein tyrosine kinases that have




recently been implicated in the




regulation of innate immunity, evidence




for functional redundancy between Fps




and Fer kinases in regulating




hematopoiesis.


FLT3
fms-related
CD135 is a cytokine receptor expressed
Immune



tyrosine
on the surface of hematopoietic
Health



kinase 3
progenitor cells. Signaling through




CD135 plays a role in cell survival,




proliferation, and differentiation. CD135




is important for lymphocyte (B cell and T




cell) development, but not for the




development of other blood cells




(myeloid development).


NKTR
natural killer-
The natural killer triggering receptor
Immune



tumor
(NKTR) is involved in the recognition of
Health



recognition
tumor cells by large granular



sequence
lymphocytes (LGLs) (Frey et al., 1991;




Anderson et al., 1993). LGLs are a




subpopulation of white blood cells that




have the ability to kill target tumor cells




by an MHC-independent mechanism.




The protein product of the NKTR gene is




present on the surface of LGLs and




facilitates their binding to tumor targets.




The gene codes for a protein of 150,000




Da, with a unique amino acid structure




consisting of a 58-amino acid




hydrophobic amino terminus followed by




a cyclophilin-related domain.


PABPC4
\poly(A)
might be necessary for regulation of
Immune



binding
stability of labile mRNA species in
Health



protein,
activated T cells.



cytoplasmic 4



(inducible



form)\“”


PAG1
phosphoprotein
Absence of external stimuli, the PAG-
Immune health



associated
Csk complex transmits negative



with
regulatory signals and thus may help to



glycosphingolipid
keep resting T cells in a quiescent state.



microdomains 1
PAG-CSK complex increases the




signaling threshold required for initiating




an immune response, thus helping to




keep lymphocytes in a resting state.


ADRBK2
\adrenergic,
Specifically phosphorylates the agonist-
Immune health



beta, receptor
occupied form of the beta-adrenergic



kinase 2\“”
and closely related receptors, in




leukocytes from patients with active




relapsing-remitting multiple sclerosis




(MS) or with secondary progressive MS,




GRK2 levels are significantly reduced,




probable role in immune Maintenance




and health


GFI1
growth factor
Gfi1 maintained hematopoietic stem cell
Immune health



independent 1
self-renewal, multilineage differentiation,




and efficient reconstitution of




hematopoiesis in transplanted hosts by




restricting stem cell proliferation


GPR34
G protein-
GPR34 is the functional mast cell lysoPS
Immune health



coupled
receptor. Lysophosphatidyl-L-serine



receptor 34
(lysoPS) is thought to be an




immunological regulator


GPR44
G protein-
This receptor also called, CRTH2 is a
Immune health



coupled
receptor for PGD2, PGD2 functions as a



receptor 44
neuromodulator as well as a trophic




factor in the central nervous system.




PGD2 is also involved in smooth muscle




contraction/relaxation and is a potent




inhibitor of platelet aggregation,




receptor for prostaglandin (PG) D(2),




which is a major mast cell product




released during the allergic response.




CRTH2 mediates the chemotaxis of




eosinophils, basophils, and Th2




lymphocytes


HHEX
hematopoietically
Transcriptional repressor. May play a
Immune health



expressed
role in hematopoietic differentiation.



homeobox


ID2
\inhibitor of
Id2 has an essential role in the
Immune health



DNA binding
generation of peripheral lymphoid



2, dominant
organs and NK cells. D (inhibitor of DNA



negative
binding) HLH proteins lack a basic DNA-



helix-loop-
binding domain but are able to form



helix protein\“”
heterodimers with other HLH proteins,




thereby inhibiting DNA binding,




importance of Id2 in regulating gene




expression by CD8(+) T cells and the




magnitude of effector responses,




suggesting a mechanism involving Id




protein- and E protein-mediated survival




and differentiation of mature T cells,




helix-loop-helix (HLH) transcription factor




Id2 (inhibitor of DNA




binding/differentiation 2) acts as a




molecular switch in development of




Langerhans cells (LCs), the cutaneous




contingent of dendritic cells (DCs), and




of specific DC subsets and B cells.


IL10RA
\interleukin 10
The protein encoded by this gene is a
Immune health



receptor,
receptor for interleukin 10. This protein is



alpha\“”
structurally related to interferon




receptors. It has been shown to mediate




the immunosuppressive signal of




interleukin 10, and thus inhibits the




synthesis of proinflammatory cytokines.




This receptor is reported to promote




survival of progenitor myeloid cells




through the insulin receptor substrate-




2/PI 3-kinase/AKT pathway. Activation of




this receptor leads to tyrosine




phosphorylation of JAK1 and TYK2




kinases.


IL7R
interleukin 7
This protein has been shown to play a
Immune health



receptor
critical role in the V(D)J recombination




during lymphocyte development. This




protein is also found to control the




accessibility of the TCR gamma locus by




STAT5 and histone acetylation.




Knockout studies in mice suggested that




blocking apoptosis is an essential




function of this protein during




differentiation and activation of T




lymphocytes. The functional defects in




this protein may be associated with the




pathogenesis of the severe combined




immunodeficiency (SCID). Receptor for




interleukin-7. Also acts as a receptor for




thymic stromal lymphopoietin


IRF8
interferon
ICSBP in regulating the proliferation
Immune health



regulatory
and differentiation of hematopoietic



factor 8
progenitor cells, antiviral responses




associated with impaired production of




IFN-gamma


ITK
IL2-inducible
Tec kinases Itk and Rlk provide
Immune health



T-cell kinase
important signals for terminal maturation,




efficient cytokine production, and




peripheral survival of NKT cells. This




gene encodes an intracellular tyrosine




kinase expressed in T-cells. The protein




contains both SH2 and SH3 domains




which are often found in intracellular




kinases. It is thought to play a role in T-




cell proliferation and differentiation.


JAK1
Janus kinase
Tyrosine kinase of the non-receptor
Immune health



1 (a protein
type, involved in the IFN-



tyrosine
alpha/beta/gamma signal pathway.



kinase)
Kinase partner for the interleukin (IL)-2




receptor. The Janus kinase-signal




transducer and activator of transcription




(Jak-Stat) pathway stands as a




paradigm of how diverse extracellular




signals can elicit rapid changes in gene




expression in specific target cells. This




pathway is widely used by members of




the cytokine receptor superfamily,




including those for the clinically




important cytokines granulocyte colony-




stimulating factor (G-CSF),




erythropoietin, thrombopoietin, the




interferons, and numerous interleukins,




which makes it central to hematopoietic




cell biology and hematologic therapy




alike. Impaired lymphoid development




in the absensce of JAK1


JMJD1A
jumonji
Jmjd1a and Jmjd2c histone H3 Lys 9
Immune health



domain
demethylases regulate self-renewal in



containing 1A
embryonic stem cells.


JMJD2C
jumonji
Jmjd1a and Jmjd2c histone H3 Lys 9
Immune health



domain
demethylases regulate self-renewal in



containing 2C
embryonic stem cells.


KIR2DS2
\killer cell
Killer-cell immunoglobulin-like receptors
Immune health



immunoglobulin-
(KIRs), are a family of cell surface



like
proteins found on important cells of the



receptor, two
immune system called natural killer (NK)



domains,
cells. They regulate the killing function of



short
these cells by interacting with MHC class



cytoplasmic
I molecules, which are expressed on all



tail, 2\“”
cell types. This interaction allows them




to detect virally infected cells or tumor




cells that have a characteristic low level




of Class I MHC on their surface. Most




KIRs are inhibitory, meaning that their




recognition of MHC suppresses the




cytotoxic activity of their NK cell. Only a




limited number of KIRs have the ability




to activate cells. This gene is an




activating receptor.


KLRC1
\killer cell
Natural killer (NK) cells are lymphocytes
Immune health



lectin-like
that can mediate lysis of certain tumor



receptor
cells and virus-infected cells without



subfamily C,
previous activation. They can also



member 1\“”
regulate specific humoral and cell-




mediated immunity. NK cells




preferentially express several calcium-




dependent (C-type) lectins, which have




been implicated in the regulation of NK




cell function.


L3MBTL3
l(3)mbt-like 3
H-L(3)MBT protein, whose deletion is
Immune health



(Drosophila)
predicted to be responsible for myeloid




hematopoietic malignancies, tumor




suppressor gene.


MEMO1
mediator of
Highly present in NK cells and other
Immune health



cell motility 1
hematopoeitic cells


NAGA
\N-
Highly present in monocytes (Ascenta)
Immune health



acetylgalactos
what are the implications? lysosomal



aminidase,
glycohydrolase that cleaves alpha-N-



alpha-\“”
acetylgalactosaminyl moieties from




glycoconjugates.


NDFIP1
Nedd4 family
Ndfip1 protein promotes the function of
Immune health



interacting
itch ubiquitin ligase to prevent T cell



protein 1
activation and T helper 2 cell-mediated




inflammation.


NR1D2
\nuclear
Heme as the ligand
Immune health



receptor



subfamily 1,



group D,



member 2\“”


PRNP
\prion protein
PrPc is expressed on hematopoietic
Immune health
Red blood



(p27-30)
cells, including erythroid precursors.

cell health



(Creutzfeldt-
Prion protein is expressed on long-term



Jakob
repopulating hematopoietic stem cells



disease,
and is important for their self-renewal.



Gerstmann-
PrP is a marker for long-term



Strausler-
hematopoietic stem cells. Prion protein



Scheinker
expression may be involved in both the



syndrome,
metabolism of copper and resistance to



fatal familial
oxidative stress, neuroprotective role of



insomnia)\“”
cellular prion protein (PrPC) rion protein




interferes with divalent metal Mn uptake




and protects against Mn-induced




oxidative stress


PSCD1
\pleckstrin
Members of this family appear to
Immune health



homology,
mediate the regulation of protein sorting



Sec7 and
and membrane trafficking. The PSCD1



coiled-coil
is highly expressed in natural killer and



domains
peripheral T cells, and regulates the



1(cytohesin
adhesiveness of integrins at the plasma



1)\“”
membrane of lymphocytes.


PTGER4
prostaglandin
This receptor can activate T-cell factor
Immune health



E receptor 4
signaling. It has been shown to mediate



(subtype EP4)
PGE2 induced expression of early




growth response 1 (EGR1), regulate the




level and stability of cyclooxygenase-2




mRNA, and lead to the phosphorylation




of glycogen synthase kinase-3.




Knockout studies in mice suggest that




this receptor may be involved in the




neonatal adaptation of circulatory




system, osteoporosis, as well as




initiation of skin immune responses.




Receptor for prostaglandin E2 (PGE2).




The activity of this receptor is mediated




by G(s) proteins that stimulate adenylate




cyclase. Has a relaxing effect on smooth




muscle. May play an important role in




regulating renal hemodynamics,




intestinal epithelial transport, adrenal




aldosterone secretion, and uterine




function.


PTPN11
\protein
Shp-2 is a widely expressed nonreceptor
Immune health



tyrosine
protein tyrosine phosphatase that



phosphatase,
participates early in hematopoietic



non-receptor
development.



type 11



(Noonan



syndrome



1)\“”


PTPN22
\protein
This gene encodes a protein tyrosine
Immune health



tyrosine
phosphatase which is expressed



phosphatase,
primarily in lymphoid tissues. This



non-receptor
enzyme associates with the molecular



type 22
adapter protein CBL and may be



(lymphoid)\“”
involved in regulating CBL function in




the T-cell receptor signaling pathway.


PTPRC
\protein
This gene is specifically expressed in
Immune health



tyrosine
hematopoietic cells. This PTP has been



phosphatase,
shown to be an essential regulator of T-



receptor type,
and B-cell antigen receptor signaling. It



C\“”
functions through either direct interaction




with components of the antigen receptor




complexes, or by activating various Src




family kinases required for the antigen




receptor signaling. This PTP also




suppresses JAK kinases, and thus




functions as a regulator of cytokine




receptor signaling.


RASSF5
Ras
Potential tumor suppressor. Seems to
Immune health



association
be involved in lymphocyte adhesion by



(RalGDS/AF-
linking RAP1A activation upon T cell



6) domain
receptor or chemokine stimulation to



family 5
integrin activation. Isoform 2 stimulates




lymphocyte polarization and the patch-




like distribution of ITGAL/LFA-1,




resulting in an enhanced adhesion to




ICAM1. Together with RAP1A may




participate in regulation of microtubule




growth. The association of isoform 2 with




activated RAP1A is required for




directional movement of endothelial cells




during wound healing


RFX5
\regulatory
MHC class II molecules play a key role
Immune health



factor X, 5
in the immune system. They present



(influences
exogenous antigenic peptides to the



HLA class II
receptor of CD4+ T-helper lymphocytes,



expression)\“”
thereby triggering the antigen-specific T-




cell activation events required for the




initiation and sustenance of immune




responses.. Activates transcription from




class II MHC promoters. Differentiation




of hematopoietic stem and progenitors




cells is an intricate process controlled in




large part at the level of transcription.




new transcriptional regulators of




megakaryopoiesis.


SENP6
SUMO1/sentrin
important in adult hematopoietic self-
Immune health



specific
renewal



peptidase 6


SERPINB9
\serpin
The intracellular granzyme B inhibitor,
Immune health



peptidase
proteinase inhibitor 9, is up-regulated



inhibitor,
during accessory cell maturation and



clade B
effector cell degranulation, and its



(ovalbumin),
overexpression enhances CTL (cytotoxic



member 9\“”
lymphocyte) potency, the presence and




subcellular localization of PI-9 in




leukocytes and DCs are consistent with




a protective role against ectopic or




misdirected grB during an immune




response.


SOX4
SRY (sex
Sox4 contribute to the survival and
Immune health



determining
proliferation of pro-B cells in response to



region Y)-box 4
extracellular signals.


SPEN
\spen
The ability of Ott1 to affect
Immune health



homolog,
hematopoietic cell fate and expansion in



transcriptional
multiple lineages is a novel attribute for



regulator
a spen family member and delineates



(Drosophila)\“”
Ott1 from other known effectors of




hematopoietic development.


SYBL1
synaptobrevin-
VAMP-7 is a crucial component of
Immune health



like 1
granzyme B release and target cell




killing in the NK cell


TMPO
thymopoietin
It is possible that TCERG1 interacts with
Immune health




the nascent transcript (or RNP) and




directly alters splicing decisions. This




could be consistent with independent




effects on transcription elongation and




alternative processing. Alternatively,




TCERG1 could work at


VNN1
vanin 1
VNN1 gene product is involved in the
Immune health




thymus homing of bone marrow cells




and in late adhesion steps of thymus




homing under physiologic,




noninflammatory conditions.




Recently VNN1 gene upregulation has




been linked to increased HDL level




The product of CD1c gene is expressed




on cortical thymocytes, immature




myeloid dendritic cells, subset of normal




peripheral B cells and activated T cells


ZFX
\zinc finger
Zfx controls the self-renewal of
Immune health



protein, X-
embryonic and hematopoietic stem cells.



linked\“”
Zfx as a shared transcriptional regulator




of ESC and HSC, suggesting a common




genetic basis of self-renewal in




embryonic and adult SC.


ZNF317
zinc finger
ZNF317 may play an important role in
Immune health
Red blood



protein 317
erythroid maturation and lymphoid

cell health




proliferation


ZNF589
zinc finger
Characterization of SZF1 implicates its
Immune health



protein 589
role in hematopoiesis.


OGT
O-linked N-
The regulation of topoisomerase I (topo
Immune



acetylglucosamine
I) activity is of prime importance for gene
Health



(GlcNAc)
expression. It participates in DNA



transferase
replication, transcription, recombination,



(UDP-N-
and DNA repair, and serves as a target



acetylglucosamine:
for anticancer drugs. Many proteins and



polypeptide-
enzymes are modified by O-linked beta-



N-
N-acetylglucosamine (O-GlcNAc), which



acetylglucosaminyl
exerts profound effects on their function.



transferase)
OGT is a central factor for T- and B-




lymphocytes activation.. OGT




participation in intracellular glycosylation




is essential for embryonic stem cell




viability


PIK3R1
\phosphoinositide-
Important in adult hematopoietic self-
Immune



3-kinase,
renewal
Health



regulatory



subunit 1 (p85



alpha)\“”


NKRF
NF-kappaB
Interacts with a specific negative
Inflammation



repressing
regulatory element (NRE) 5′-
control



factor
AATTCCTCTGA-3′ to mediate




transcriptional repression of certain NK-




kappa-B responsive genes. NF-κB-




repressing factor (NRF) is a




constitutively expressed nuclear




transcription factor that binds to beta




interferon (IFN-β), interleukin-8 (IL-8),




and inducible nitric oxide synthase




(iNOS) promoters and represses the




basal transcription of these genes


NR3C1
\nuclear
The glucocorticoid receptor (GR) is a
Inflammation



receptor
ligand-dependent transcription factor
control



subfamily 3,
belonging to the nuclear hormone



group C,
receptor superfamily. Due to its almost



member 1
ubiquitous expression, GR plays an



(glucocorticoid
important role in many physiological and



receptor)\“”
pathological processes. These include




regulation of homeostasis, adaptation to




stress, and modulation of central




nervous system. In addition, GR is a




major modulator of the immune system




due to its proficient anti-inflammatory




and immunosuppressive activity; and its




function is important for proper




regulation of many physiological




processes.


ZCCHC11
\zinc finger,
ZCCHC11 is a unique TLR signal
Inflammation



CCHC
regulator, which interacts with TIFA after
control



domain
LPS treatment and suppresses the



containing
TRAF6-dependent activation of NF-



11\“”
kappaB.


SIRT1
sirtuin (silent
Longevity gene
Longevity



mating type

gene



information



regulation 2



homolog) 1



(S. cerevisiae)


YTHDF2
\YTH domain
A polymorphism of the YTHDF2 gene
Longevity



family,
(1p35) located in an Alu-rich genomic
gene



member 2\“”
domain is associated with human




longevity.


AP15
apoptosis
Survival gene or anti-apoptotic gene
Longevity



inhibitor 5

gene


ARNT
aryl
Bmal1-null mice lose circadian
Longevity



hydrocarbon
rhythmicity but also display tendon
gene



receptor
calcification and decreased activity,



nuclear
body weight, and longevity



translocator


FRAP1
FK506
a gene expression signature associated
Longevity



binding
with mammalian target of rapamycin
gene



protein 12-
(mTOR) activity that was down-regulated



rapamycin
with age but preserved by CR in both



associated
WAT and heart, mammalian cells the



protein 1
mammalian TOR (mTOR) pathway plays




a significant role in determining both




resting oxygen consumption and




oxidative capacity, mTOR activity may




play an important role in determining the




relative balance between mitochondrial




and non-mitochondrial sources of ATP




generation.


HSPA9
heat shock
this member of the hsp70 family governs
Longevity



70 kDa protein
the longevity of worms and thus there
gene



9 (mortalin)
are common pathways that determine




mammalian and worm longevity


POLG2
\polymerase
Mitochondrial polymerase processivity
Mitochondrial



(DNA
subunit. Stimulates the polymerase and
DNA Health



directed),
exonuclease activities, and increases



gamma 2,
the processivity of the enzyme. Binds to



accessory
sc-DNA.



subunit\“”


OPA1
optic atrophy
Mitochondrial health is defined by
Mitochondrial



1 (autosomal
various parameters including fusion and
Health



dominant)
fission events. In older cells, giant




mitochondria accumulates. This is




because of insufficient autophagy.




These giants don't fuse with each other




or with normal mitochondria and it was




noticed that OPA1 is reduced in these




giant mitochondria, mitochondria fuse




and divide to change their morphology in




response to a multitude of signals.




During the past decade, work using




yeast and mammalian cells has




identified much of the machinery




required for fusion and division,




including the dynamin-related GTPases--




mitofusins (Fzo1p in yeast) and OPA1




(Mgm1p in yeast) for fusion and Drp1




(Dnm1p) for division. Mitochondrial fusion




requires coordinated fusion of the outer




and inner membranes. This process




leads to exchange of contents, controls




the shape of mitochondria, and is




important for mitochondrial function.




OPA1 is a major organizer of the




mitochondrial inner membrane and is




required for the maintenance of cristae




integrity. As the loss of OPA1 committed




cells to apoptosis without any other




stimulus. Olichon et al. (2003) proposed




that OPA1 is involved in the




sequestration of cytochrome c, and that




OPA1 may be a target for mitochondrial




apoptotic effectors.


PDSS2
\prenyl
PDSS2 gene, which encodes a subunit
Mitochondrial



(decaprenyl)
of decaprenyl diphosphate synthase, the
Health



diphosphate
first enzyme of the CoQ(10) biosynthetic



synthase,
pathway.



subunit 2\“”


MFN1
mitofusin 1
The regulated equilibrium between
Mitochondrial




mitochondrial fusion and fission is
Health




essential to maintain integrity of the




organelle. Mechanisms of mitochondrial




fusion are largely uncharacterized in




mammalian cells. It is unclear whether




OPA1, a dynamin-related protein of the




inner membrane mutated in autosomal




dominant optic atrophy, participates in




fusion or fission. OPA1 promoted the




formation of a branched network of




elongated mitochondria, requiring the




integrity of both its GTPase and C-




terminal coiled-coil domain. Stable




reduction of OPA1 levels by RNA




interference resulted in small,




fragmented, and scattered mitochondria.




Levels of OPA1 did not affect




mitochondrial docking, but they




correlated with the extent of fusion as




measured by polyethylene glycol




mitochondrial fusion assays. A genetic




analysis proved that OPA1 was unable




to tubulate and fuse mitochondria




lacking the outer membrane mitofusin 1




but not mitofusin 2. Our data show that




OPA1 functionally requires mitofusin 1 to




regulate mitochondrial fusion and reveal




a specific functional difference between




mitofusin 1 and 2.


MTRF1L
mitochondrial

Mitochondrial



translational

Health



release factor



1-like


NDUFC2
\NADH
Accessory subunit of the mitochondrial
Mitochondrial



dehydrogenase
membrane respiratory chain NADH
Health



(ubiquinone)
dehydrogenase (Complex I), that is



1,
believed to be not involved in catalysis.



subcomplex
Complex I functions in the transfer of



unknown, 2,
electrons from NADH to the respiratory



14.5 kDa\“”
chain. The immediate electron acceptor




for the enzyme is believed to be




ubiquinone.


NDUFS1
\NADH
Core subunit of the mitochondrial
Mitochondrial



dehydrogenase
membrane respiratory chain NADH
Health



(ubiquinone)
dehydrogenase (Complex I) that is



Fe—S protein
believed to belong to the minimal



1.75 kDa
assembly required for catalysis.



(NADH-
Complex I functions in the transfer of



coenzyme Q
electrons from NADH to the respiratory



reductase)\“”
chain. The immediate electron acceptor




for the enzyme is believed to be




ubiquinone (By similarity). This is the




largest subunit of complex I and it is a




component of the iron-sulfur (IP)




fragment of the enzyme. It may form part




of the active site crevice where NADH is




oxidized.


SDHD
\succinate
Complex II of the respiratory chain,
Mitochondrial



dehydrogenase
which is specifically involved in the
Health



complex,
oxidation of succinate, carries electrons



subunit D,
from FADH to CoQ. The complex is



integral
composed of four nuclear-encoded



membrane
subunits and is localized in the



protein\“”
mitochondrial inner membrane.


ENC1
ectodermal-
Highly present in neuronal cells (and
Nervous



neural cortex
brain tissues from Ascenta-almost
System Health



(with BTB-like
absent in other tissues) and involved in



domain)
neuronal differentiation. Likely a Redox




controlling protein


ADNP
activity-
Involved in proper lipid metabolism,
Nervous



dependent
coagulation as well as in neurogenesis.
System Health



neuroprotector
Multiple Roles in Neuronal




Differentiation and Maintenance,




neuroprotective protein


AGTPBP1
ATP/GTP
zinc carboxypeptidase that contains
Nervous



binding
nuclear localization signals and an
System Health



protein 1
ATP/GTP-binding motif that was initially




cloned from regenerating spinal cord




neurons of the mouse. Role in




preventing neurodegeneration.


OAT
ornithine
OAT encodes the mitochondrial enzyme
Nervous



aminotransferase
ornithine aminotransferase, which is a
system health



(gyrate
key enzyme is the pathway that converts



atrophy)
arginine and ornithine into the major




excitatory and inhibitory




neurotransmitters glutamate and GABA.




Vitamin B6 dependent enzyme.


PTDSS1
Phosphatidylserine
Phosphatidylserine (PS or PtdSer) is a
Nervous



synthase 1
phospholipid nutrient found in fish, green
system health




leafy vegetables, soybeans, and rice,




and is essential for the normal




functioning of neuronal cell membranes,




activating protein kinase C (PKC), which




has been shown to be involved in




memory function. PS has been




investigated in a small number of




double-blind placebo trials and has been




shown to increase memory performance




in the elderly. Because of the potential




cognitive benefits of phosphatidylserine,




the substance is sold as a dietary




supplement to people that believe they




can benefit from an increased intake.


SPOCK2
\sparc/osteonectin,
May participate in diverse steps of
Nervous



cwcv
neurogenesis
system health



and kazal-like



domains



proteoglycan



(testican) 2\“”


ADSS
adenylosuccinate
carries out the first of a 2-step sequence
Nucleotide



synthase
in the biosynthesis of AMP from IMP.
Biosynthesis




Plays an important role in the de novo




pathway of purine nucleotide




biosynthesis. AMP, is a nucleotide that




is found in RNA.


DCTD
dCMP
Supplies the nucleotide substrate for
Nucleotide



deaminase
thymidylate synthetase which is the
Biosynthesis




enzyme used to generate thymidine




monophosphate (dTMP), which is




subsequently phosphorylated to




thymidine triphosphate for use in DNA




synthesis and repair.


HPRT1
hypoxanthine
HPRT1 has a central role in the
Nucleotide



phosphoribosyltransferase
generation of purine nucleotides through
biosynthesis



1 (Lesch-
the purine salvage pathway. HPRT1



Nyhan
catalyzes conversion of hypoxanthine to



syndrome)
inosine monophosphate and guanine to




guanosine monophosphate via transfer




of the 5-phosphoribosyl group from 5-




phosphoribosyl 1-pyrophosphate


PRPS1
phosphoribosyl
Phosphoribosylpyrophosphate
Nucleotide



pyrophosphate
synthetase (PRPS; EC 2.7.6.1)
biosynthesis



synthetase 1
catalyzes the phosphoribosylation of




ribose 5-phosphate to 5-phosphoribosyl-




1-pyrophosphate, which is necessary for




the de novo and salvage pathways of




purine and pyrimidine biosynthesis


CMPK
cytidylate
Uridine monophosphate (UMP)/cytidine
Nucleotide
Mitochondrial



kinase
monophosphate (CMP) kinase (EC
Biosynthesis
Health




2.7.4.4) catalyzes the phosphoryl




transfer from ATP to UMP, CMP, and




deoxy-CMP (dCMP), resulting in the




formation of ADP and the corresponding




nucleoside diphosphate. These




nucleoside diphosphates are required




for cellular nucleic acid synthesis.




Enzyme deficiency in the salvage




pathway of deoxyribonucleotide




synthesis in mitochondria can cause




mtDNA depletion syndromes.




Maintenance of mitochondrial health.


ABCD3
\ATP-binding
Peroxisome biogenesis
Peroxisome



cassette, sub-

Health



family D



(ALD),



member 3\“”


ABCD4
\ATP-binding
Peroxisome biogenesis
Peroxisome



cassette, sub-

Health



family D



(ALD),



member 4\“”


PEX12
peroxisomal

Peroxisome



biogenesis

Health



factor 12


PEX3
peroxisomal

Peroxisome



biogenesis

Health



factor 3


RABGAP1L
RAB GTPase
Lower levles in platelet dysfunction
Platelet health



activating



protein 1-like


CANX
calnexin
Calcium-binding protein that interacts
Protein quality




with newly synthesized glycoproteins in
control




the endoplasmic reticulum. It may act in




assisting protein assembly and/or in the




retention within the ER of unassembled




protein subunits. It seems to play a




major role in the quality control




apparatus of the ER by the retention of




incorrectly folded proteins.


CLPX
ClpX
Clp ATPases are protein machines
Protein quality



caseinolytic
involved in protein degradation. The
control



peptidase X
ClpXP ATPase-protease complex is a



homolog (E. coli)
major component of the protein quality




control machinery in the cell.


DERL1
\Der1-like
Derlin-1 is an important factor for the
Protein quality



domain
extraction of certain aberrantly folded
control



family,
proteins from the mammalian ER.



member 1\“”
Functional component of endoplasmic




reticulum-associated degradation




(ERAD) for misfolded lumenal proteins.




May act by forming a chann


DNAJA1
\DnaJ
Human DnaJ 2 (Hdj-2) is a co-
Protein quality



(Hsp40)
chaperone of heat shock cognate 70
control



homolog,
(Hsc70) which is localized to the



subfamily A,
cytosolic face of the ER. Necessary for



member 1\“”
proper folding of proteins and therefore




proper functions of various proteins.


EDEM3
\ER
enhances glycoprotein endoplasmic
Protein quality



degradation
reticulum-associated degradation and
control



enhancer,
mannose trimming, accelerates ERAD of



mannosidase
misfolded glycoproteins.



alpha-like 3\“”


OMA1
\OMA1
The integrity of the inner membrane of
Protein quality



homolog, zinc
mitochondria is maintained by a
control



metallopeptidase
membrane-embedded quality control




S. cerevisiae)\

system that ensures the removal of



“”
misfolded membrane proteins. Two




ATP-dependent AAA proteases with




catalytic sites at opposite membrane




surfaces are key components of this




proteolytic system, identify Oma1 as a




novel component of the quality control




system in the inner membrane of




mitochondria. Mitochondrial protease


CTSO
cathepsin O
normal cellular protein degradation and
Protein quality




tumover
control


HSP90AB1
\heat shock
HSP90's function in the regulation and
Protein quality



protein 90 kDa
correct folding of at least 100
control



alpha
proteins[26] allows it to refold and/or



(cytosolic),
degrade these products before they



class B
trigger cell death. They participate in the



member 1\“”
regulation of the stress response [2, 3]




and, when associated with other co-




chaperones, function in correctly folding




newly synthesized proteins, stabilizing




and refolding denatured proteins after




stress, preventing misfolding and




aggregation of unfolded or partially




folded proteins, and assisting in protein




transport across the endoplasmic




reticulum (ER) and organellar




membranes [4-8]. HSP90 members




have key roles in the maturation of




signal transduction proteins, like




hormone receptors, various kinases,




nitric oxide synthase and calcineurin


HSPBAP1
HSPB (heat

Protein quality



shock 27 kDa)

control



associated



protein 1


NGLY1
N-glycanase 1
N-glycanase is a highly conserved
Protein quality




enzyme that catalyzes deglycosylation
control




of misfolded N-linked glycoproteins by




cleaving the glycan chain before the




proteins are degraded by the




proteasome


SACS
spastic ataxia
The presence of heat-shock domains
Protein quality



of Charlevoix-
suggested a function for sacsin in
control



Saguenay
chaperone-mediated protein folding.



(sacsin)


SELS
selenoprotein S
SEPS1 gene helps in ridding the cell of
Protein quality




misfolded proteins, preventing it from
control




accumulating and subsequently resulting




to inflammation. SEPS1 as a type of




“garbage truck” that helps clear faulty




proteins that accumulate in cells when




they are placed under stress, causing




inflammation to develop.


ST13
suppression
Hip facilitates may facilitate the
Protein quality



of
chaperone function of Hsc/Hsp70 in
control



tumorigenicity
protein folding and repair, and in



13 (colon
controlling the activity of regulatory



carcinoma)
proteins such as steroid receptors and



(Hsp70
regulators of proliferation or apoptosis.



interacting



protein)


PDIA6
\protein
Formation and rearrangement of
Protein quality



disulfide
disulfide bonds during the correct folding
control



isomerase
of nascent proteins is modulated by a



family A,
family of enzymes known as thiol



member 6\“”
isomerases, which include protein




disulfide isomerase (PDI),


PDCL
phosducin-like
most members of the phosducin family
Protein quality




act as co-chaperones with the cytosolic
control




chaperonin complex (CCT) to assist in




the folding of a variety of proteins from




their nascent polypeptides


PDCL3
phosducin-like 3
most members of the phosducin family
Protein quality




act as co-chaperones with the cytosolic
control




chaperonin complex (CCT) to assist in




the folding of a variety of proteins from




their nascent polypeptides


AGA
aspartylglucos
key enzyme in the catabolism of N-
Protein quality;



aminidase
linked oligosaccharides of glycoproteins.
Nervous




It cleaves the asparagine from the
system health




residual N-acetylglucosamines as one of




the final steps in the lysosomal




breakdown of glycoproteins. Needed for




proper folding of proteins, particularly in




the nervous system


ABCB10
\ATP-binding
a mitochondrial inner membrane
Red blood cell



cassette, sub-
erythroid transporter involved in heme
health



family B
biosynthesis



(MDR/TAP),



member 10\“”


CAPRIN2
caprin family
Involved in regulation of growth as
Red blood cell



member 2
erythroblasts shift from a highly
health




proliferative state towards their terminal




phase of differentiation.


CYBRD1
cytochrome b
Cybrd1 (duodenal cytochrome b) is not
Red blood cell



reductase 1
necessary for dietary iron absorption in
health




mice. Likely participates in enhanced




iron demand due to erythropoesis, ay




be involved in extracellular ascorbate




recycling in erythrocyte membranes.


EDRF1
Erythroid
Transcription factor involved in erythroid
Red blood cell



differentiation-
differentiation. Involved in transcriptional
health



related
activation of the globin gene.



factor 1


ERMAP
erythroblast
Human Ermap is highly expressed in
Red blood cell



membrane-
erythroid tissues and the protein
health



associated
localizes to the plasma membrane,



protein
particularly in sites of cell contact, and



(Scianna
“cytoplasmic bodies.” Ermap expression



blood group)
was restricted to fetal and adult erythroid




tissues


ETS1
v-ets
ETS is responsible for erythroblast and
Red blood cell
Immune



erythroblastos
fibroblast transformation. Critical for
health
Health



is virus E26
maturation of the T Cells. Tumor



oncogene
suppressor.



homolog 1



(avian)


FLVCR1
feline
Exports cytoplasmic heme. May be
Red blood cell



leukemia virus
required to protect developing erythroid
health



subgroup C
cells from heme toxicity.



cellular



receptor 1


ADD3
adducin 3
ADD3 may have a role in erythroblasts
Red blood cell



(gamma)
and play an earlier role in erythropoiesis,
health




hypertension.


IKZF1
IKAROS
structure of a chromatin remodeling
Red blood cell



family zinc
complex (PYR complex) with Ikaros as
health



finger 1
its DNA binding subunit that is



(Ikaros)
specifically present in adult murine and




human hematopoietic cells. Ikaros is




involved in human adult or fetal erythroid




differentiation as well as in the




commitment between erythroid and




myeloid cells.


MAEA
macrophage
The association of erythroblasts with
Red blood cell



erythroblast
macrophages plays a central role in the
health



attacher
terminal maturation and enucleation of




erythroblasts. MAEA mediates




attachment of erythroblasts to




macrophages.


MYB
v-myb
c-Myb is strictly required for expression
Red blood cell



myeloblastosis
of the c-Kit receptor in erythroid cells.
health



viral
The transcription factor c-Myb is



oncogene
expressed at high levels in immature



homolog
progenitors of all hematopoietic lineages



(avian)
and is involved in the regulation of




proliferation, differentiation, and survival,




role for c-Myb as a factor promoting




commitment to erythropoiesis and




progression from early to late stages of




differentiation (FIG. 6). We have




shown that this function of c-Myb is




probably not related to the cell cycle but




rather to the control of a network of




hematopoietic regulators. The




expression of c-Kit in erythroid




progenitors was tightly dependent on c-




Myb levels. Finally, we demonstrated




that c-Myb acts as a coordinator at the




CFU-E stage by promoting further




progression while supporting terminal




cell divisions.


NFE2L3
nuclear factor
Activates erythroid-specific, globin gene
Red blood cell



(erythroid-
expression
health



derived 2)-like 3


SMAP1
stromal
SMAP-1 may have a stimulatory effect
Red blood cell



membrane-
on stroma-supported erythropoiesis.
health



associated



protein 1


ZNF266
zinc finger
HZF1 play important roles in erythroid
Red blood cell



protein 266
and megakaryocytic differentiation.
health




Increased HZF1 mRNA expression was




observed following erythroid




differentiation of K562 cells induced by




hemin or megakaryocytic differentiation




of K562 cells induced by phorbol




myristate acetate (PMA). Both of the




antisense method and RNA interference




assay revealed that


RNPS1
\RNA binding
Formation of transcription-induced R-
RNA Quality



protein S1,
loops poses a critical threat to genomic
Control



serine-rich
integrity throughout evolution., RNA



domain\“”
binding protein RNPS1 alleviates




ASF/SF2 depletion-induced genomic




instability. RNPS1, that when




overexpressed strongly suppresses the




high molecular weight (HMW) DNA




fragmentation, hypermutation, and G2




cell cycle arrest phenotypes of ASF/SF2-




depleted cells. Involved in RENT2-




dependent nonsense-mediated decay




(NMD) of mRNAs containing premature




stop codons. Also mediates increase of




mRNA abundance and translational




efficiency. Binds spliced mRNA 20-25 nt




upstream of exon-exon junctions, low




NMD efficiency is shown to be




functionally related to the reduced




abundance of the exon junction




component RNPS1


PAPOLG
poly(A)
This gene encodes a member of the
RNA Quality



polymerase
poly(A) polymerase family which
Control



gamma
catalyzes template-independent




extension of the 3′ end of a DNA/RNA




strand. This enzyme is exclusively




localized in the nucleus and exhibits




both nonspecific and CPSF (cleavage




and polyadenylation specificity




factor)/AAUAAA-dependent




polyadenylation activity.


DCP2
DCP2
Necessary for the degradation of
RNA Quality



decapping
mRNAs, both in normal mRNA tumover
Control



enzyme
and in nonsense-mediated mRNA



homolog (S. cerevisiae)
decay.


DDX5
DEAD (Asp-
Nonsense mediated RNA degradation
RNA Quality



Glu-Ala-Asp)

Control



box



polypeptide 5


ERLIN2
ER lipid raft
key ERAD pathway component that may
RNA Quality



associated 2
act as a substrate recognition factor.
Control


PARN
pol(A)-
3′-exoribonuclease that has a preference
RNA quality



specific
for poly(A) tails of mRNAs, thereby
control



ribonuclease
efficiently degrading poly(A) tails.



(deadenylation
Exonucleolytic degradation of the



nuclease)
poly(A) tail is often the first step in the




decay of eukaryotic mRNAs and is also




used to silence certain maternal mRNAs




translationally during oocyte maturation




and early embryonic development.




Interacts with both the 3′-end poly(A) tail




and the 5′-end cap structure during




degradation, the interaction with the cap




structure being required for an efficient




degradation of poly(A) tails. Involved in




nonsense-mediated mRNA decay, a




critical process of selective degradation




of mRNAs that contain premature stop




codons.


UPF2
UPF2
Nonsense-mediated mRNA decay
RNA quality



regulator of
(NMD) represents a key mechanism to
control



nonsense
control the expression of wild-type and



transcripts
aberrant mRNAs. Phosphorylation of the



homolog
protein UPF1 in the context of



(yeast)
translation termination contributes to




committing mRNAs to NMD.


UPF3A
UPF3
They promote nonsense-mediated
RNA quality



regulator of
mRNA decay (NMD), and they also
control



nonsense
regulate translation efficiency.



transcripts



homolog A



(yeast)


TRNT1
\tRNA
Adds and repairs the conserved 3′-CCA
RNA quality



nucleotidyl
sequence necessary for the attachment
control



transferase,
of amino acids to the 3′ terminus of



CCA-adding,
tRNA molecules, using CTP and ATP as



1\“”
substrates.


MAT2B
\methionine
Methionine adenosyltransferase (MAT;
SAM



adenosyltransferase
S-adenosyl-L-methionine synthetase,
Biosynthetic



II,
EC 2.5.1.6)1 is an essential enzyme that
machinary



beta\“”
catalyzes the synthesis of S-




adenosylmethionine (AdoMet) from L-




methionine (L-Met) and ATP (1, 2).




AdoMet is the major methyl group donor,




participating in the methylation of




proteins, DNA, RNA, phospholipids, and




other small molecules (reviewed in Refs.




3-5). In addition, AdoMet is the ultimate




source of the propylamine moiety used




in polyamine biosynthesis, and it serves




as co-factor for other key enzymes in the




one-carbon metabolism pathway.




Methionine adenosyltransferase (MAT;




EC 2.5.1.6) catalyzes the biosynthesis of




S-adenosylmethionine (AdoMet) from




methionine and ATP. MAT II is a broadly




expressed MAT consisting of catalytic




alpha and noncatalytic beta subunits




encoded by MAT2A (601468) and




MAT2B, respectively. Methionine




adenosyltransferase (MAT) catalyzes




the biosynthesis of S-




adenosylmethionine (AdoMet), a key




molecule in transmethylation reactions




and polyamine biosynthesis. The MAT II




isozyme consists of a catalytic alpha2




and a regulatory beta subunit. Down-




regulation of the MAT II beta subunit




expression causes a 6-10-fold increase




in intracellular AdoMet levels.


SKIV2L2
superkiller
mutation in skiv2l2 causes defects in cell
Skin Health



viralicidic
proliferation, suggesting that skiv2l2



activity 2-like
plays a role in regulating melanoblast



2 (S. cerevisiae)
proliferation during early stages of




melanocyte regeneration. Skin


ALDH18A1
\aldehyde
Defects in this enzyme plays a role in
Skin health,
Nervous



dehydrogenase
neurodegeneration, joint laxity, skin

system



18 family,
hyperelasticity. Role in L-Proline

health



member A1\“”
biosynthesis


KIT
Mast/stem cell
mobilization of hematopoetic stem cells
Stem cell



growth factor
into peripheral blood; marker for HSCs
health



receptor
and MSCs



precursor


FLT3
FMS-like
restricted to CD34+ (high proportion of
Stem cell



tyrosine
stem/progenitor cells)
health



kinase 3)


ITK
IL2-inducible
play a role in T cell proliferation and
Stem cell



T-cell kinase
differentiation
health


CD74
Cluster of
Hematopoietic Stem Cell survival
Stem cell



Differentiation
pathway
health



74


HOXB2
Homeobox
Expressed in erythromegakaryocytic
Stem cell



B2,
cells and Hematopoietic Stem Cells
health


CIAPIN1
Cytokine
Necessary for hematopoiesis
Stem cell



induced

health



apoptosis



inhibitor 1


NOTCH4

hematopoietic stem/progenitor cells
Stem cell





health


NCOR1
nuclear
NCOR, a repressor or transcription, is a
Stem cell



receptor co-
principal regulator in neural stem cells
health



repressor 1


PUM2
pumilio
Sequence-specific RNA-binding protein
Stem cell



homolog 2
that regulates translation and mRNA
health



(Drosophila)
stability by binding the 3′-UTR of mRNA




targets. Its interactions and tissue




specificity suggest that it may be




required to support proliferation and self-




renewal of stem cells by regulating the




translation of key transcripts.


SLAIN2
\SLAIN motif
Slain1 was expressed at the stem cell
Stem cell



family,
and epiblast stages of ESC
health



member 2\“”
differentiation


ACVR1
\activin A
Necessary for proper skeletal/bone
Stem cell



receptor, type
formation; regulate the fate of
health



I\“”
hematopoietic progenitor and stem cells




during development


PDCD4
programmed
The translation inhibitor programmed cell
Tumor



cell death 4
death 4 (Pdcd4) suppresses
suppresor



(neoplastic
tumorigenesis and invasion.



transformation



inhibitor)


AXIN2
\axin 2
The Axin-related protein, Axin2,
Tumor



(conductin,
presumably plays an important role in
suppressor



axil)\“”
the regulation of the stability of beta-
function




catenin in the Wnt signaling pathway,




like its rodent homologs, mouse




conductin/rat axil. In mouse, conductin




organizes a multiprotein complex of APC




(adenomatous polyposis of the colon),




beta-catenin, glycogen synthase kinase




3-beta, and conductin, which leads to




the degradation of beta-catenin.




Apparently, the deregulation of beta-




catenin is an important event in the




genesis of a number of malignancies.




The AXIN2 gene has been mapped to




17q23-q24, a region that shows frequent




loss of heterozygosity in breast cancer,




neuroblastoma, and other tumors.




Mutations in this gene have been




associated with colorectal cancer with




defective mismatch repair.


AZIN1
antizyme
It has been shown to regulate DNA
Tumor



inhibitor 1
methylation and has tumor suppressor
suppressor




activity, enhances the nonhomologous
function




end-joining repair of DNA double-strand




breaks in human oral cancer cells.


BECN1
\beclin 1
UVRAG interacts with Beclin 1, leading
Tumor



(coiled-coil,
to activation of autophagy and thereof
suppressor



myosin-like
inhibition of tumorigenesis.
function



BCL2



interacting



protein)\“”


CREBBP
CREB binding
CBP has tumor suppressing activity. CBP
Tumor



protein
may function as a ‘master-switch’
suppressor



(Rubinstein-
between energy storage and
function



Taybi
expenditure, long term memory.



syndrome)


CREBL2
cAMP
potential tumor suppressor
Tumor



responsive

suppressor



element

function



binding



protein-like 2


DIDO1
death inducer-
Putative transcription factor, weakly pro-
Tumor



obliterator 1
apoptotic when overexpressed (By
suppressor




similarity). Tumor suppressor.
function


ING2
\inhibitor of
Tumor suppressor
Tumor



growth family,

suppressor



member 2\“”

function


KRAS
v-Ki-ras2
Pfeifer (2001) noted an interesting
Tumor



Kirsten rat
parallel to the p53 (191170) tumor
suppressor



sarcoma viral
suppressor, which was initially described
function



oncogene
as an oncogene, carrying point



homolog
mutations in tumors. Later it was




discovered that it is, in fact, the wildtype




copy of the gene that functions as a




tumor suppressor gene and is capable




of reducing cell proliferation


MTSS1
metastasis
putative metastasis suppressor gene
Tumor



suppressor 1

suppressor





function


RB1
retinoblastoma
Key regulator of entry into cell division
Tumor



1 (including
that acts as a tumor suppressor. Directly
suppressor



osteosarcoma)
involved in heterochromatin formation by
function




maintaining overall chromatin structure




and, in particular, that of constitutive




heterochromatin by stabilizing histone




methylation.


SDCCAG1
serologically
can function as a tumor suppressor in
Tumor



defined colon
human lung cancer cells.
suppressor



cancer

function



antigen 1


SMAD4
SMAD family
Common mediator of signal transduction
Tumor



member 4
by TGF-beta (transforming growth
suppressor




factor) superfamily; SMAD4 is the
function




common SMAD (co-SMAD). Promotes




binding of the SMAD2/SMAD4/FAST-1




complex to DNA and provides an




activation function required for SMAD1




or SMAD2 to stimulate transcription.




May act as a tumor suppressor.


STK3
\serine/threonine
Novel tumor suppressor function.
Tumor



kinase 3
Stress-activated, pro-apoptotic kinase
suppressor



(STE20
which, following caspase-cleavage,
function



homolog,
enters the nucleus and induces



yeast)\“”
chromatin condensation followed by




internucleosomal DNA fragmentation.


UVRAG
UV radiation
UVRAG interacts with Beclin 1, leading
Tumor



resistance
to activation of autophagy and thereof
suppressor



associated
inhibition of tumorigenesis.
function



gene


WWOX
WW domain
critical tumor suppressor gene
Tumor



containing

suppressor



oxidoreductase

function


FOXO1
forkhead box
Tumor suppressor and essential role in
Tumor
Immune



O1
the Maintenance of hematopoetic stem
suppressor
Health




cells
function


TFRC
\transferrin



receptor (p90,



CD71)\“”








Claims
  • 1. A method for modulating the expression of genes related to chromatin stability by administering an effective amount of a composition comprising a fruit ingredient, a vegetable ingredient and an herbal ingredient, wherein the fruit ingredient is at least one of pomegranate and citrus bioflavonoids, wherein the vegetable ingredient is at least one of asparagus, lutein, lycopene and watercress, and wherein the herbal ingredient is at least one of basil, oregano and rosemary, the composition modulating the expression of genes related to chromatin stability
  • 2. The method of claim 1, wherein said administering step includes administering the composition to a subject in the form of three tablets, each tablet administered twice a day.
  • 3. The method of claim 1, wherein said administering step includes administering a composition that up-regulates the expression of chromatin stability-related genes.
  • 4. A method of modulating the expression of DNA repair-related genes by administering an effective amount of a composition comprising a fruit ingredient, a vegetable ingredient and an herbal ingredient, wherein the fruit ingredient is at least one of pomegranate and citrus bioflavonoids, wherein the vegetable ingredient is at least one of asparagus, lutein, lycopene and watercress, and wherein the herbal ingredient is at least one of basil, oregano and rosemary, the composition modulating the expression of genes related to DNA repair.
  • 5. The method of claim 4, wherein said administering step including administering the composition to a subject in the form of three tablets, each tablet administered twice a day.
  • 6. The method of claim 4, wherein said administering step includes administering the composition thereby up-regulating the expression of DNA repair-related genes.
  • 7. A method for reducing the risk of chromatin damage by administering an effective amount of a composition comprising a fruit ingredient, a vegetable ingredient and an herbal ingredient, wherein the fruit ingredient is at least one of pomegranate and citrus bioflavonoids, wherein the vegetable ingredient is at least one of asparagus, lutein, lycopene and watercress, and wherein the herbal ingredient is at least one of basil, oregano and rosemary, the composition modulating the expression of genes thereby reducing the risk of chromatin damage.
  • 8. The method of claim 7, wherein said administering step including administering the composition to a subject in the form of three tablets, each tablet administered twice a day.
  • 9. The method of claim 7, wherein said administering step includes administering a composition that up-regulates the expression of chromatin stability-related genes.
  • 10. A combinatorial therapy comprising: an effective amount of a composition comprising a fruit ingredient, a vegetable ingredient and an herbal ingredient, wherein the fruit, ingredient is at least one of pomegranate and citrus bioflavonoids, wherein the vegetable ingredient is at least one of asparagus, lutein, lycopene and watercress, and wherein the herbal ingredient is at least one of basil, oregano and rosemary, the composition modulating the expression of genes thereby reducing a risk of chromatin damage; anda second composition for treating a disease, wherein said second composition alters chromatin stability.
  • 11. The combinatorial therapy of claim 10 further comprising alfalfa, brassica, and kale.
  • 12. The combinatorial therapy of claim 10 further comprising vitamins and minerals.
  • 13. The combinatorial therapy of claim 12, wherein the vitamins are chosen from vitamin A, vitamin C, vitamin D, vitamin E, niacin, vitamin B6, vitamin B12, folic acid, biotin, and pantothenic acid.
  • 14. The combinatorial therapy of claim 12 wherein the minerals are chosen from calcium, magnesium, iodine, potassium, copper, zinc, phosphorus, manganese, chromium, selenium, and molybdenum.
  • 15. The combinatorial therapy of claim 10 wherein the citrus bioflavonoids are in concentrate form and include naringen, hesperidin and narirutin.
  • 16. The combinatorial therapy of claim 10 wherein the fruit ingredient, the vegetable ingredient and the herbal ingredient are present in a ratio of 3.5:1:1.
Parent Case Info

This is a continuation-in-part application of U.S. application Ser. No. 10/915,784, filed Aug. 11, 2004, which is a continuation-in-part application of U.S. application Ser. No. 10/360,789, filed May 7, 2002 (now U.S. Pat. No. 6,989,161), which is a continuation-in-part application of U.S. application Ser. No. 09/878,377, filed Jun. 12, 2001 (now U.S. Pat. No. 6,511,675), which claims benefit of U.S. Provisional Application No. 60/210,746, filed Jun. 12, 2000, all of which are hereby incorporated by reference.

Provisional Applications (1)
Number Date Country
60210746 Jun 2000 US
Continuation in Parts (3)
Number Date Country
Parent 10915784 Aug 2004 US
Child 12059868 US
Parent 10360789 May 2002 US
Child 10915784 US
Parent 09878377 Jun 2001 US
Child 10360789 US