Patent Application
20060118419
The present invention relates in general to devices and methods of gel electrophoresis, and in particular, to sample loading in horizontal gel electrophoresis.
Gel electrophoresis is one of the most frequently utilized tools for biomedical researches and industries. In gel electrophoresis, a gel matrix is connected to electrodes via a running buffer. Samples are loaded into a plurality of sample wells of the gel matrix. Charged molecules in loaded samples migrate from sample wells into gel matrix when electric field being applied. Different molecules migrate in different rates and appear as distinguishable bands in gel matrix. By placement of gel matrix, gel devices and methods have been classified into horizontal gel electrophoresis and vertical gel electrophoresis.
To load samples into sample wells, loading buffer, a mixture to make samples heavier and viscous, is usually a requirement in preparing samples for loading. Otherwise, as aqueous liquid, samples will flow out of sample wells instantly.
In modern biomedical researches and industries, it is routine activities to run gels with large quantity of samples. Rapid electrophoresis process is, therefore, highly desirable to meet its fast pace. In many cases, it turns out that the most time-consuming and labor-intensive step in gel electrophoresis is the requirement of mixing loading buffer into samples, rather than the electrophoresis itself.
Chen, in U.S. Pat. No. 5,549,806, teaches a device and method of high-speed gel electrophoresis. Chen needs, while accelerating electrophoresis speed, to prepare his samples with loading buffer before starting his high-speed gel electrophoresis.
It is, therefore, an object of the invention to omit the requirement of sample preparation with loading buffer in horizontal gel electrophoresis. The advantages of the invention are:
a is an illustrative diagram of a gel matrix in traditional horizontal gel electrophoresis.
b is a comparison diagram showing the principle of the invention.
Sample molecules, such as DNA, are usually dissolved in water or aqueous reaction buffers. Sample wells of gel matrix are also immersed under aqueous gel running buffer. It is impossible to distinguish two similar aqueous solutions apart without using loading buffer. In practice, it takes a long time and pipetting to mix loading buffer into each sample prior to horizontal gel electrophoresis.
Are there any other easy ways to keep samples in wells without using loading buffer?
Gravity drives a project to fall down. Water, with a specific gravity equal to 1, is the main component of all kinds of aqueous buffers. Load buffer makes sample's specific gravity heavier than 1 so that samples fall down to well bottom under running buffer. In our daily life, we know that oil stays on top of water with a clear interface between them. In a comparison of oil to loading buffer, it shows amazing similarity:
Now the strategy of the invention is clear, utilizing a hydrophobic liquid for direct sample loading without sample preparation with loading buffer.
a illustrates a conventional setup of horizontal gel electrophoresis. Gel matrix 16 has sample wells 10 filled with running buffer 19. Sample 12 stays in bottom of wells 10 by loading buffer enhanced gravity and viscosity.
b shows a comparison of the invention to figure la. Buffer 19 is reduced to lower level. Top surface of gel matrix 16 is exposed to air. Then Oil 15 is added on top of gel matrix 16 to fill all sample wells 10. Sample 14 is pipetted directly from reaction, such as PCR tubes, into sample wells 10 without mixing with loading buffer. The specific gravity of sample 14 in PCR reaction is little greater than 1. The specific gravity of oil is less than 1. Thus, sample 14 stays at bottom of sample wells 10. A clear interface distinguishes sample 14 from oil 15, which blocks diffusion of sample 14. Oil 15 can be added on top of gel matrix 16 because:
In all applications, a hydrophobic liquid is the key element of the invention. Many hydrophobic liquids are available from market, such as white mineral oils, vegetable oils, vegetable oil esters, methyl esters, etc. The essential required properties are:
1. Hydrophobic.
2. Specific gravity less than 1.
For further optimizing its application, additional properties should be evaluated as low viscosity, low odor, high flash point for fire safety, no chemical hazard, and biodegradable for environmental protection.
The volume of the hydrophobic liquid varies in different applications. It is required that at least a portion of sample wells is occupied by the hydrophobic liquid.
To tracking sample migration in electrophoresis, tracking dyes can be added into just one of the sample wells prior to electrophoresis. Alternatively, tracking dye can be premixed into oil as a stock solution.
After loading a sample into a well, a flat interface is formed between sample and oil. A bright reflection of light from the interface is used as an indicator to ensure correct loading order along the line of sample wells.
The general operation steps of the invention, an example as shown in
1. Have a bottle containing oil 25.
2. Place gel matrix 26 into gel apparatus 30 with two ends sealed by dams 20 and 27.
3. Pour about 25 ml of oil 25 onto gel matrix 26 to fill sample wells 22.
4. Load samples 24 directly from reaction tube into sample wells 22 without loading buffer.
5. Add running buffer 28 into apparatus 30 and perform electrophoresis.
Although the description above contains specifications, it will apparent to who's skilled in the art that a number of other variations and modifications may be made in this invention without departing from its spirit and scope. The volume of oil 25, for example, can be reduced to 1 ml for covering wells 10 only. Running buffer 28 can be added before addition of oil 25. Thus, the description as set out above should not be constructed as limiting the scope of the invention but as merely providing illustration of the presently preferred embodiment of the invention.
