Patent Application
20080286770
Not Applicable
Not Applicable
The present invention relates in part to isolated nucleic acid molecules (polynucleotides) which encode Rhipicephalus sanguineus (brown dog tick) glutamate-gated chloride channels.
The present invention also relates to recombinant vectors and recombinant hosts which contain a DNA fragment encoding R. sanguineus glutamate-gated chloride channels, substantially purified forms of associated R. sanguineus glutamate-gated chloride channels and recombinant membrane fractions comprising these proteins, associated mutant proteins, and methods associated with identifying compounds which modulate associated Rhipicephalus sanguineus glutamate-gated chloride channels, which will be useful as insecticides.
Glutamate-gated chloride channels, or H-receptors, have been identified in arthropod nerve and muscle (Lingle et al, 1981, Brain Res. 212: 481-488; Horseman et al., 1988, Neurosci. Lett. 85: 65-70; Wafford and Sattelle, 1989, J. Exp. Bio. 144: 449-462; Lea and Usherwood, 1973, Comp. Gen. Parmacol. 4: 333-350; and Cull-Candy, 1976, J. Physiol. 255: 449-464).
Invertebrate glutamate-gated chloride channels are important targets for the widely used avermectin class of anthelmintic and insecticidal compounds. The avermectins are a family of macrocyclic lactones originally isolated from the actinomycete Streptomyces avermitilis. The semisynthetic avermectin derivative, ivermectin (22,23-dihydro-avermectin B1α), is used throughout the world to treat parasitic helminths and insect pests of man and animals. The avermectins remain the most potent broad spectrum endectocides exhibiting low toxicity to the host. After many years of use in the field, there remains little resistance to avermectin in the insect population. The combination of good therapeutic index and low resistance strongly suggests that the glutamate-gated chloride (GluCl) channels remain good targets for insecticide development.
Glutamate-gated chloride channels have been cloned from the soil nematode Caenorhabditis elegans (Cully et al., 1994, Nature 371: 707-711; see also U.S. Pat. No. 5,527,703 and Arena et al., 1992, Molecular Brain Research. 15: 339-348) and Ctenocephalides felis (flea; see WO 99/07828).
In addition, a gene encoding a glutarnate-gated chloride channel from Drosophila melanogaster was previously identified (Cully et al., 1996, J. Biol. Chem. 271: 20187-20191; see also U.S. Pat. No. 5,693,492).
Despite the identification of the aforementioned cDNA clones encoding GluCl channels, it would be advantageous to identify additional genes which encode R. sanguineus GluCl channels in order to allow for improved screening to identify novel GluCl channel modulators that may have insecticidal, acaricidal and/or nematocidal activity for animal health, especially as related to treatment of tick and mite infestation in dogs, cats, cattle, sheep and other agriculturally important animals. The present invention addresses and meets these needs by disclosing novel genes which express a P sanguineus GluGl1 and R. sanguineus GluGl2 channel wherein expression of these R. sanguineus GluCl RNAs in Xenopus oocytes or other appropriate host cells result in an active GluCl channel. Heterologous expression of a GluCl channel of the present invention will allow the pharmacological analysis of compounds active against parasitic invertebrate species relevant to animal and human health, especially in the treatment of tick infestations in dogs and cats. Heterologous cell lines expressing an active GluCl channel can be used to establish functional or binding assays to identify novel GluCl channel modulators that may be useful in control of the aforementioned species groups.
The present invention relates to an isolated or purified nucleic acid molecule (polynucleotide) which encodes a novel Rhipicephalus sanguineus (brown dog tick) invertebrate GluCl1 channel protein. The DNA molecules disclosed herein may be transfected into a host cell of choice wherein the recombinant host cell provides a source for substantial levels of an expressed functional single, homomultimeric or heteromultimeric LGIC. Such functional ligand-gated ion channels may possibly respond to other known ligands which will in turn provide for additional screening targets to identify modulators of these channels, modulators which may act as effective insecticidal, mitacidal and/or nematocidal treatment for use in animal and human health and/or crop protection.
The present invention relates to an isolated or purified nucleic acid molecule (polynucleotide) which encodes a novel Rhipicephalus sanguineus invertebrate GluCl2 channel protein.
The present invention further relates to an isolated nucleic acid molecule (polynucleotide) which encodes mRNA which expresses a novel Rhipicephalus sanguineus GluCl1 channel protein, this DNA molecule comprising the nucleotide sequence disclosed herein as SEQ ID NO:1, SEQ ID NO:3, and SEQ ID NO:5.
The present invention further relates to an isolated nucleic acid molecule (polynucleotide) which encodes mRNA which expresses a novel Rhipicephalus sanguineus GluCl2 channel protein, this DNA molecule comprising the nucleotide sequence disclosed herein as SEQ ID NO:7.
The present invention also relates to biologically active fragments or mutants of SEQ ID NOs:1, 3, 5 and 7 which encodes mRNA expressing a novel Rhipicephalus sanguineus invertebrate GluCI1 or GluCl2 channel protein, respectively. Any such biologically active fragment and/or mutant will encode either a protein or protein fragment which at least substantially mimics the pharmacological properties of a R. sanguineus GluCl channel protein, including but not limited to the R. sanguineus GluCl1 channel proteins as set forth in SEQ ID NO:2, SEQ ID NO:4, and SEQ ID NO:6 as well as the respective GluCl2 channel protein as set forth in SEQ ID NO:8. Any such polynucleotide includes but is not necessarily limited to nucleotide substitutions, deletions, additions, amino-terminal truncations and carboxy-terminal truncations such that these mutations encode mRNA which express a functional R. sanguineus GluCl channel in a eukaryotic cell, such as Xenopus oocytcs, so as to be useful for screening for agonists and/or antagonists of R. sanguineus GCuCl activity.
A preferred aspect of this portion of the present invention is disclosed in
The isolated nucleic acid molecules of the present invention may include a deoxyribonucleic acid molecule (DNA), such as genomic DNA and complementary DNA (cDNA), which may be single (coding or noncoding strand) or double stranded, as well as synthetic DNA, such as a synthesized, single stranded polynucleotide. The isolated nucleic acid molecule of the present invention may also include aribonucleic acid molecule (RNA).
The present invention also relates to recombinant vectors and recombinant host cells, both prokaryotic and eukaryotic, which contain the substantially purified nucleic acid molecules disclosed throughout this specification.
The present invention also relates to a substantially purified form of an R. sanguineus GluCl1 channel protein, which comprises the amino acid sequence disclosed in
A preferred aspect of this portion of the present invention is a R. sanguineus GluCl1 channel protein which consists of the amino acid sequence disclosed in
Another preferred aspect of this portion of the present invention is a R. sanguineus GluCl2 channel protein which consists of the amino acid sequence disclosed in
Another preferred aspect of the present invention relates to a substantially purified, fully processed (including any proteolytic processing, glycosylation and/or phosphorylation) mature GluCl channel protein obtained from a recombinant host cell containing a DNA expression vector comprises a nucleotide sequence as set forth in SEQ ID NOs: 1, 3, 5 and/or 7 and expresses the respective RsGluCl1 or RsGluCl2 precursor protein. It is especially preferred that the recombinant host cell be a eukaryotic host cell, including but not limited to a mammalian cell line, an insect cell line such as an S2 cell line, or Xenopus oocytes.
Another preferred aspect of the present invention relates to a substantially purified membrane preparation, partially purified membrane preparation, or cell lysate which has been obtained from a recombinant host cell transformed or transfected with a DNA expression vector which comprises and appropriately expresses a complete open reading frame as set forth in SEQ ID NOs: 1, 3, 5 and/or 7, resulting in a functional form of the respective RsGluCl1 or RsGluCl2 channel. The subcellular membrane fractions and/or membrane-containing cell lysates from the recombinant host cells (both prokaryotic and eukaryotic as well as both stably and transiently transformed or transfected cells) contain the functional proteins encoded by the nucleic acids of the present invention. This recombinant-based membrane preparation may comprise a R. sanguineus GluCl channel and is essentially free from contaminating proteins, including but not limited to other R. sanguineus source proteins or host proteins from a recombinant cell which expresses the T12 (SEQ ID NO:2), T82 (SEQ ID NO:4) 732 (SEQ ID NO:6) GluCl channel protein and/or the B1 (SEQ ID NO:8) GluCl2 channel protein. Therefore, a preferred aspect of the invention is a membrane preparation which contains a R. sanguineus GluCl channel comprising a GluCl protein comprising the functional form of the full length GluCl1 channel proteins as disclosed in
The present invention also relates to biologically active fragments and/or mutants of a R. sanguineus GluCl1 channel protein, comprising the amino acid sequence as set forth in SEQ ID NOs:2, 4 and/or 6, as well as biologically active fragments and/or mutants of a R. sanguineus GluCl2 channel protein, comprising the amino acid sequence as set forth in SEQ ID NO:8, including but not necessarily limited to amino acid substitutions, deletions, additions, amino terminal truncations and carboxy-terminal truncations such that these mutations provide for proteins or protein fragments of diagnostic, therapeutic or prophylactic use and would be useful for screening for selective modulators, including but not limited to agonists and/for antagonists for R. sanguineus GluCl1 channel pharmacology.
A preferred aspect of the present invention is disclosed in
The present invention also relates to polyclonal and monoclonal antibodies raised in response to the disclosed forms of RsGluCl1 and/or RsGluCl2, or a biologically active fragment thereof.
The present invention also relates to RsGluCl1 and/or RsGluCl2 fusion constructs, including but not limited to fusion constructs which express a portion of the RsGluCl linked to various markers, including but in no way limited to GFP (Green fluorescent protein), the MYC epitope, and GST. Any such fusion constructs may be expressed in the cell line of interest and used to screen for modulators of one or more of the RsGluCl proteins disclosed herein.
The present invention relates to methods of expressing R. sanguineus GluCl1 and/or RsGluCl2 channel proteins and biological equivalents disclosed herein, assays employing these gene products, recombinant host cells which comprise DNA constructs which express these proteins, and compounds identified through these assays which act as agonists or antagonists of GluCl channel activity.
It is an object of the present invention to provide an isolated nucleic acid molecule (e.g., SEQ ID NOs:1, 3, 5, and 7) which encodes a novel form of R. sanguneus GluCl, or fragments, mutants or derivatives RsGluCl1 or RsGluCl2, these proteins as set forth in SEQ ID NOs:2, 4, 6 and 8, respectively. Any such polynucleotide includes but is not necessarily limited to nucleotide substitutions, deletions, additions, amino-terminal truncations and carboxy-terminal truncations such that these mutations encode mRNA which express a protein or protein fragment of diagnostic, therapeutic or prophylactic use and would be useful for screening for selective modulators for invertebrate GluCl pharmacology.
It is a further object of the present invention to provide the R. sanguineus-GluCl proteins or protein fragments encoded by the nucleic acid molecules referred to in the preceding paragraph.
It is a further object of the present invention to provide recombinant vectors and recombinant host cells which comprise a nucleic acid sequence encoding R. sanguineus GluCl proteins or a biological equivalent thereof.
It is an object of the present invention to provide a substantially purified form of R. sanguineus GluCl1 or GluCl2 proteins, respectively, as set forth in SEQ ID NOs:2, 4, 6, and 8.
Is another object of the present invention to provide a substantially purified recombinant form of a R. sanguineus GluCl protein which has been obtained from a recombinant host cell transformed or transfected with a DNA expression vector which comprises and appropriately expresses a complete open reading frame as set forth in SEQ ID NOs: 1, 3, 5, and 7, resulting in a functional, processed form of the respective RsGluCl channel. It is especially preferred that the recombinant host cell be a eukaryotic host cell, such as a mammalian cell line.
It is an object of the present invention to provide for biologically active fragments and/or mutants of R. sanguineus GluCl1 or GluCl2 proteins, respectively, such as set forth in SEQ ID NOs:2, 4, 6, and 8, including but not necessarily limited to amino acid substitutions, deletions, additions, amino terminal truncations and carboxy-terminal truncations such that these mutations provide for proteins or protein fragments of diagnostic, therapeutic and/or prophylactic use.
It is further an object of the present invention to provide for substantially purified subcellular membrane preparation, partially purified membrane preparation or crude lysate from recombinant cells which comprise a pharmacologically active R. sanguineus GluCl1 or GluCl2-containing single, homomultimeric or hetermultimer channel, respectively, especially subcellular fractions obtained from a host cell transfected or transformed with a DNA vector comprising a nucleotide sequence which encodes a protein which comprises the amino acid as set forth in
It is another object of the present invention to provide a substantially purified membrane preparation, partially purified membrane preparation, or crude lysate obtained from a recombinant host cell transformed or transfected with a DNA expression vector which comprises and appropriately expresses a complete open reading frame as set forth in SEQ ID NOs: 1, 3, 5, and/or 7, resulting in a functional, processed form of the respective RsGluCl channel. It is especially preferred is that the recombinant host cell be a eukaryotic host cell, including but not limited to a mammalian cell line, an insect cell line such as an S2 cell line, or Xenopus oocytes.
It is also an object of the present invention to use R. sanguineus GluCl proteins or membrane preparations containing R. sanguineus GluCl proteins or a biological equivalent to screen for modulators, preferably selective modulators, of R. sanguineus GluCl channel activity. Any such compound may be useful in screening for and selecting compounds active against parasitic invertebrate species relevant to animal and human health. Such species include but are not limited to worms, fleas, ticks, mites and lice. These membrane preparations may be generated from heterologous cell lines expressing these GluCls and may constitute full length protein, biologically active fragments of the full length protein or may rely on fusion proteins expressed from various fusion constructs which may be constructed with materials available in the art.
As used herein, “substantially free from other nucleic acids” means at least 90%, preferably 95%, more preferably 99%, and even more preferably 99.9%, free of other nucleic acids. As used interchangeably with the terms “substantially free from other nucleic acids” or “substantially purified” or “isolated nucleic acid” or “purified nucleic acid” also refer to a DNA molecules which comprises a coding region for a R. sanguineus GluCl protein that has been purified away from other cellular components. Thus, a R. sanguineus GluCl DNA preparation that is substantially free from other nucleic acids will contain, as a percent of its total nucleic acid, no more than 10%, preferably no more than 5%, more preferably no more than 1%, and even more preferably no more than 0.1%, of non-R. sanguineus CluCl nucleic acids. Whether a given R. sanguineus GluCl DNA preparation is substantially free from other nucleic acids can be determined by such conventional techniques of assessing nucleic acid purity as, e.g., agarose gel electrophoresis combined with appropriate staining methods, e.g., ethidium bromide staining, or by sequencing.
As used herein, “substantially free from other proteins” or “substantially purified” means at least 90%, preferably 95%, more preferably 99%, and even more preferably 99.9%, free of other proteins. Thus, a R. sanguineus GluCl protein preparation that is substantially free from other proteins will contain, as a percent of its total protein, no more than 10%, preferably no more than 5%, more preferably no more than 1%, and even more preferably no more than 0.1%, of non-R. sanguineus GluCl proteins. Whether a given R. sanguineus GluCl protein preparation is substantially free from other proteins can be determined by such conventional techniques of assessing protein purity as, e.g., sodium dodecyl sulfate polyacrylamide gel electrophoresis (SDS-PAGE) combined with appropriate detection methods, e.g., silver staining or immunoblotting. As used interchangeably with the terms “substantially free from other proteins” or “substantially purified”, the terms “isolated R. sanguineus GluCl protein” or “purified R. sanguineus GluCl protein” also refer to R. sanguineus GluCl protein that has been isolated from a natural source. Use of the term “isolated” or “purified” indicates that R. sanguineus GluCl protein has been removed from its normal cellular environment. Thus, an isolated R. sanguineus GluCl protein may be in a cell-free solution or placed in a different cellular environment from that in which it occurs naturally. The term isolated does not imply that an isolated R. sanguineus GluCl protein is the only protein present, but instead means that an isolated R. sanguineus GluCl protein is substantially free of other proteins and non-amino acid material (e.g., nucleic acids, lipids, carbohydrates) naturally associated with the K sanguineus GluCl protein in vivo. Thus, a R. sanguineus GluCl protein that is recombinantly expressed in a prokaryotic or eukaryotic cell and substantially purified from this host cell which does not naturally (i.e., without intervention) express this GluCl protein is of course “isolated R. sanguineus GluCl protein” under any circumstances referred to herein. As noted above, a R. sanguineus GluCl protein preparation that is an isolated or purified R. sanguineus GluCl protein will be substantially free from other proteins will contain, as a percent of its total protein, no more than 10%, preferably no more than 5%, more preferably no more than 1%, and even more preferably no more than 0.1%, of non-R. sanguineus GluCl proteins.
As used interchangeably herein, “functional equivalent” or “biologically active equivalent” means a protein which does not have exactly the same amino acid sequence as naturally occurring R. sanguineus GluCl, due to alternative splicing, deletions, mutations, substitutions, or additions, but retains substantially the same biological activity as k sanguineus GluCl. Such functional equivalents will have significant amino acid sequence identity with naturally occurring R. sanguineus GluCl and genes and cDNA encoding such functional equivalents can be detected by reduced stringency hybridization with a DNA sequence encoding naturally occurring R. sanguineus GluCl. For example, a naturally occurring R. sanguineus GluCl1 protein disclosed herein comprises the amino acid sequence shown as SEQ ID NO:2 and is encoded by SEQ ID NO:1. A nucleic acid encoding a functional equivalent has at least about 50% identity at the nucleotide level to SEQ ID NO:1.
As used herein, “a conservative-amino acid substitution” refers to the replacement of one amino acid residue by another, chemically similar, amino-acid residue. Examples of such conservative substitutions are: substitution of one hydrophobic residue (isoleucine, leucine, valine, or methionine) for another; substitution of one polar residue for another polar residue of the same charge (e.g., arginine for lysine; glutamic acid for aspartic acid).
As used herein, “LGIC” refers to a—ligand-gated ion channel
As used herein, “GluCl” refers to—L-glutamnate gated chloride channel
As used herein, “RsGluCl” refers to—Rhipicephalus sanguineus L-glutamate gated chloride channel.
Furthermore, as used herein “RsGluCl” may refer to RsGluCl1 and/or RsGluCl2.
As used herein, the term “mammalian” will refer to any mammal, including a human being.
The present invention relates to an isolated nucleic acid molecule (polynucleotide) which encodes a Rhipicephalus sanguineus invertebrate GluCl channel protein. The isolated or purified nucleic acid molecules of the present invention are substantially free from other nucleic acids. For most cloning purposes, DNA is a preferred nucleic acid. As noted above, the DNA molecules disclosed herein may be transfected into a host cell of choice wherein the recombinant host cell provides a source for substantial levels of an expressed functional single, homomultimeric or heteromultimeric GluCl channel. Such functional ligand-gated ion channels may possibly respond to other known ligands which will in turn provide for additional screening targets to identify modulators of these channels, modulators which may act as effective insecticidal, mitacidal and/or nematocidal treatment for use in animal and human health and/or crop protection. It is shown herein that RsGluCl 1 exhibits a current in response to glutamate and that an RsGluCl2 channel protein expressed in Xenopus oocytes exhibit a current in response to the addition of ivermectin phosphate. However, it should be noted that a single channel subunit protein might not form a functional channel, such as seen with the GABA-A subunit gamma, which does not express a functional homomultimer. Therefore, the expressed proteins of the present invention may function in vivo as a component of a wild type ligand-gated ion channel which contains a number of accessory and/or channel proteins, including the channel proteins disclosed herein. However, the GluCl proteins of the present invention need not directly mimic the wild type channel in order to be useful to the skilled artisan. Instead, the ability to form a functional, single, membrane associated channel within a recombinant host cell renders these proteins amenable to the screening methodology known in the art and described in part within this specification. Therefore, as noted within this specification, the disclosed Rs channel proteins of the present invention are useful as single functional channels, as a homomultimeric channel or as a heteromultimeric channel with various proteins disclosed herein with or without additional Rs channel subunit proteins or accessory proteins which may contribute to the full, functional GluCl channel. As noted above, the DNA molecules disclosed herein may be transfected into a host cell of choice wherein the recombinant host cell provides a source for substantial levels of an expressed functional single, homomultimeric or heteromultimeric GluCl. Such functional ligand-gated ion channels may possibly respond to other known ligands which will in turn provide for additional screening targets to identify modulators of these channels, modulators which may act as effective insecticidal, mitacidal and/or nematocidal treatment for use in animal and human health and/or crop protection
The present invention relates to an isolated nucleic acid molecule (polynucleotide) which encodes mRNA which expresses a novel Rhipicephalus sanguineus invertebrate GluCl1 channel protein, this DNA molecule comprising the nucleotide sequence disclosed herein as SEQ ID NO:1, SEQ ID NO:3 and SEQ ID NO:5.
The present invention relates to an isolated nucleic acid molecule polynucleotide) which encodes mRNA which expresses a novel Rhipicephalus sanguineus invertebrate GluCl2 channel protein, this DNA molecule comprising the nucleotide sequence disclosed herein as SEQ ID NO:7.
The isolation and characterization of the RsGluCl nucleic acid molecules of the present invention were identified as described in detail in Example Section 1. These cDNA molecules, as discussed herein, are especially useful to establish novel insecticide screens, validate potential lead compounds with insecticidal activity, especially for use in treating cattle, dog and cat tick and mite infestations or that may kill other arachnids, and use these novel cDNA sequences as hybridization probes to isolate related genes from other organisms to establish additional pesticide drug screens. The RsGluCl1 and RsGluCl2 encoding cDNAs of the present invention were isolated from the brown dog tick species Rhipicephalus sanguineus. The DNA sequence predicts proteins that share common features with the class of chloride channels sensitive to glutamate and ivermectin. When the RsGluCl1 or RsGluCl2 cDNAs are expressed in Xenopus oocytes, a glutamate and ivermectin-sensitive channel is observed. The pharmacology of compounds that act at these channels would likely be different between these species. By screening on the arachnid channel it will be more likely to discover arachnid-specific compounds. Therefore, the cDNAs of the present invention can be expressed in cell lines or other expression systems and used for competition binding experiments or for functional chloride channel assays to screen for compounds that activate, block or modulate the channel.
Invertebrate glutamate-gated chloride channels (GluCls) are related to the glycine- and GABA-gated chloride channels and are distinct from the excitatory glutamate receptors (e.g. NMDA or AMPA receptors). The first two members of the GluCl family were identified in the nematode C. elegans, following a functional screen for the receptor of the anthelmintic drug ivermectin. Several additional GluCls have now been cloned in other invertebrate species. However, there is no evidence yet for GluCl counterparts in vertebrates; because of this, GluCls are excellent targets for anthelmintics, insecticides, acaricides, etc. Specific GluCl modulators, such as nodulisporic acid and its derivatives have an ideal safety profile because they lack mechanism-based toxicity in vertebrates. The present invention relates in part to three novel R. sanguineus GluCl1 clones, T12, T82 and T32, and a R. sanguineus GluCl2 clone, B1. The RsGluCl1 cDNAs were isolated by low stringency hybridization using a Drosophila GluCl probe representing the putative membrane spanning domains, M1, M2 and M3. The RsGluCl2 cDNA was isolated by PCR using degenerate primers representing conserved regions in amino- and the M2-domains of the GluCl proteins of Drosophila, flea (C. felis), and C. elegans. It appears that RNA editing (A to G transitions) occur in these cDNAs and have resulted in some amino acid changes. RsGluCl1-T12 and T82 are similar except for one amino acid difference while RsGluCl1-T32 contains two additional exons in the coding region.
The present invention relates to the isolated or purified DNA molecule described in
The present invention also relates to the isolated or purified DNA molecule described in
The present invention also relates to the isolated or purified DNA molecule described in
The present invention also relates to an isolated or purified DNA molecule which encodes a R. sanguineus GluCl2 protein. One such nucleic acid is described in
The above-exemplified isolated DNA molecules, shown in
2138 nuc.:initiating Met (nuc. 331-333) and “TGA” term. codon (nuc.1681-1683), the open reading frame resulting in an expressed protein of 450 amino acids, as set forth in SEQ ID NO:2.
2289 nuc.:initiating Met (nuc. 502-504) and “TGA” term. codon (nuc. 1852-1854), the open reading frame resulting in an expressed protein of 450 amino acids, as set forth in SEQ ID NO:4.
2400 nuc.:initiating Met (nuc. 617619) and “TGA” term. codon (nuc. 2168-2170), the open reading frame resulting in an expressed protein of 517 amino acids, as set forth in SEQ ID NO:6.
1402 nuc.:initiating Met (nuc. 131-133) and “TAA” term. codon (nuc. 1385-1387), the open reading frame resulting in an expressed protein of 418 amino acids, as set forth in SEQ ID NO:8.
The present invention also relates to biologically active fragments or mutants of SEQ ID NOs:1, 3, 5 and 7 which encodes mRNA expressing a novel Rhipicephalus sanguineus invertebrate GluCl1 or GluCl2 channel protein, respectively. Any such biologically active fragment and/or mutant will encode either a protein or protein fragment which at least substantially mimics the pharmacological properties of a R. sanguineus GluCl channel protein, including but not limited to the R. sanguineus GluCl channel proteins as set forth in SEQ ID NO:2, SEQ ID NO:4, and SEQ ID NO:6 as well as the respective GluCl2 channel protein as set forth in SEQ ID NO:8. Any such polynucleotide includes but is not necessarily limited to nucleotide substitutions, deletions, additions, amino-terminal truncations and carboxy-terminal truncations such that these mutations encode mRNA which express a functional R. sanguineus GluCl channel in a eukaryotic cell, such as Xenopus oocytes, so as to be useful for screening for agonists and/or antagonists of R. sanguineus GluCl activity.
A preferred aspect of this portion of the present invention is disclosed in
The isolated nucleic acid molecules of the present invention may include a deoxyribonucleic acid molecule (DNA), such as genomic DNA and complementary DNA (cDNA), which may be single (coding or noncoding strand) or double stranded, as well as synthetic DNA, such as a synthesized, single stranded polynucleotide. The isolated nucleic acid molecule of the present invention may also include a ribonucleic acid molecule (RNA).
The degeneracy of the genetic code is such that, for all but two amino acids, more than a single codon encodes a particular amino acid. This allows for the construction of synthetic DNA that encodes the RsGluCl1 or RsGluCl2 protein where the nucleotide sequence of the synthetic DNA differs significantly from the nucleotide sequence of SEQ ID NOs:1, 3, 5, and 7 but still encodes the same RsGluCl protein as SEQ ID NO:1, 3, 5 and 7. Such synthetic DNAs are intended to be within the scope of the present invention. If it is desired to express such synthetic DNAs in a particular host cell or organism, the codon usage of such synthetic DNAs can be adjusted to reflect the codon usage of that particular host, thus leading to higher levels of expression of the RsGluCl channel protein in the host. In other words, this redundancy in the various codons which code for specific amino acids is within the scope of the present invention. Therefore, this invention is also directed to those DNA sequences which encode RNA comprising alternative codons which code for the eventual translation of the identical amino acid, as shown below:
A=Ala=Alanine: codons GCA, GCC, GCG, GCU
C=Cys=Cysteine: codons UGC, UGU
D=Asp=Aspartic acid: codons GAC, GAU
E=Glu=Glutamic acid: codons GAA, GAG
F=Phe=Phenylalanine: codons WUC, UUU
G=Gly=Glycine: codons GGA, GGC, GGG, GGU
H=His=Histidine: codons CAC, CAU
I=Ile=Isoleucine: codons AUA, AUC, AUU
K=Lys=Lysine: codons AAA, AAG
L=Leu=Leucine: codons UUA, UUG, CUA, GUC, CUG, CUU
M=Met=Methionine: codon AUG
N=Asp=Asparagine: codons AAC, AAU
P=Pro=Proline: codons CCA, CCC, CCG, CCU
Q=Gln=Glutamne: codons CAA, CAG
S=Ser=Serine: codons AGC, AGU, UCA, UCC, UCG, UCU
T=Thr=Threonine: codons ACA, ACC, ACG, ACU
V=Val=Valine: codons GUA, GUC, GUG, GUU
W=Trp=Tryptaphan: codon UGG
Y=Tyr=Tyrosine: codons UAC, UAU
Therefore, the present invention discloses codon redundancy which may result in differing DNA molecules expressing an identical protein. For purposes of this specification, a sequence bearing one or more replaced colons will be defined as a degenerate variation. Another source of sequence variation may occur through RNA editing, as discussed infra. Such RNA editing may result in another form of colon redundancy, wherein a change in the open reading frame does not result in an altered amino acid residue in the expressed protein. Also included within the scope of this invention are mutations either in the DNA sequence or the translated protein which do not substantially alter the ultimate physical properties of the expressed protein. For example, substitution of valine for leucine, arginine for lysine, or asparagine for glutamine may not cause a change in functionality of the polypeptide.
It is known that DNA sequences coding for a peptide may be altered so as to code for a peptide having properties that are different than those of the naturally occurring peptide. Methods of altering the DNA sequences include but are not limited to site directed mutagenesis. Examples of altered properties include but are not limited to changes in the affinity of an enzyme for a substrate or a receptor for a ligand.
Included in the present invention are DNA sequences that hybridize to SEQ ID NOs:1, 3, 5 and 7 under stringent conditions. By way of example, and not limitation, a procedure using conditions of high stringency is as follows: Prehybridization of filters containing DNA is carried out for 2 hours to overnight at 65° C. in buffer composed of 6×SSC, 5×Denhardt's solution, and 100 Ag/ml denatured salmon sperm DNA. Filters are hybridized for 12 to 48 hrs at 65° C. in prehybridization mixture containing 100 μg/ml denatured salmon sperm DNA and 5−20×106 cpm of 32P-labeled probe. Washing of filters is done at 37° C. for 1 hr in a solution containing 2×SSC, 0.1% SDS. This is followed by a wash in 0.1×SSC, 0.1% SDS at 50° C. for 45 min. before autoradiography. Other procedures using conditions of high stringency would include either a hybridization step carried out in 5×SSC, 5×Denhardt's solution, 50% formamide at 42° C. for 12 to 48 hours or a washing step carried out in 0.2×SSPE, 0.2% SDS at 65° C. for 30 to 60 minutes. Reagents mentioned in the foregoing procedures for carrying out high stringency hybridization are well known in the art. Details of the composition of these reagents can be found in, e.g., Sambrook et al., 1989, Molecular Cloning: A Laboratory Manual; Cold Spring Harbor Laboratory, Cold Spring Harbor, N.Y. In addition to the foregoing, other conditions of high stringency which may be used are well known in the art.
“Identity” is a measure of the identity of nucleotide sequences or amino acid sequences. In general, the sequences are aligned so that the highest order match is obtained. “Identity” per se has an art-recognized meaning and can be calculated using published techniques. See, e.g.,: (Computational Molecular Biology, lesk, A. M., ed. Oxford University Press, New York, 1988; Biocomputing: Informatics and Genome Projects, Smith, D. W., ed., Academic Press, New York, 1993; Computer Analysis of Sequence Data, Part 1, Griffin, A. M., and Griffin, H. G., eds. Humana Press, New Jersey, 1994; Sequence Analysis in Molecular Biology, von Heinje, G., Academic Press, 1987; and Sequence Analysis Primer, Gribskov, M. and Devereux, J., eds., M Stockton Press, New York, 1991). While there exists a number of methods to measure identity between two polynucleotide or polypeptide sequences, the term “identity” is well known to skilled artisans (Carillo and Lipton, 1988, SIAM J Applied Math 48:1073). Methods commonly employed to determine identity or similarity between two sequences include, but are not limited to, those disclosed in Guide to Huge Computers, Martin J. Bishop, ed., Academic Press, San Diego, 1994, and Carillo and Lipton, 1988, SLAM J Applied Math 48:1073. Methods to determine identity and similarity are codified in computer programs. Preferred computer program methods to determine identity and similarity between two sequences include, but are not limited to, GCG program package (Devereux, et al, 1984, Nucleic Acids Research 12(1):387), BLASFN, and FASTA (Altschul, et al., 1990, J. Mol. Biol. 215:403).
As an illustration, by a polynucleotide having a nucleotide sequence having at least, for example, 95% “identity” to a reference nucleotide sequence of SEQ ID NO:1 is intended that the nucleotide sequence of the polynucleotide is identical to the reference sequence except that the polynucleotide sequence may include up to five point mutations or alternative nucleotides per each 100 nucleotides of the reference nucleotide sequence of SEQ ID NO:1. In other words, to obtain a polynucleotide having a nucleotide sequence at least 95% identical to a reference nucleotide sequence, up to 5% of the nucleotides in the reference sequence may be deleted or substituted with another nucleotide, or a number of nucleotides up to 5% of the total nucleotides in the reference sequence may be inserted into the reference sequence. These mutations or alternative nucleotide substitutions of the reference sequence may occur at the 5′ or 3′ terminal positions of the reference nucleotide sequence or anywhere between those terminal positions, interspersed either individually among nucleotides in the reference sequence or in one or more contiguous groups within the reference sequence. One source of such a “mutation” or change which results in a less than 100% identity may occur through RNA editing. The process of RNA editing results in modification of an mRNA molecule such that use of that modified mRNA as a template to generate a cloned cDNA may result in one or more nucleotide changes, which may or may not result in a codon change. This RNA editing is known to be catalyzed by an RNA editase. Such an RNA editase is RNA adenosine deaminase, which converts an adenosine residue to an inosine residue, which tends to mimic a cytosine residue. To this end, conversion of an mRNA residue from A to I will result in A to G transitions in the coding and noncoding regions of a cloned cDNA (e.g., see Hanrahan et al, 1999, Annals New York Acad. Sci. 868:5166; for a review see Bass, 1997, TIBS 22: 157-162). Similarly, by a polypeptide having an amino acid sequence having at least, for example, 95% identity to a reference amino acid sequence of SEQ ID NO:2 is intended that the amino acid sequence of the polypeptide is identical to the reference sequence except that the polypeptide sequence may include up to five amino acid alterations per each 100 amino acids of the reference amino acid of SEQ ID NO:2. In other words, to obtain a polypeptide having an amino acid sequence at least 95% identical to a reference amino acid sequence, up to 5% of the amino acid residues in the reference sequence may be deleted or substituted with another amino acid, or a number of amino acids up to 5% of the total amino acid residues in the reference sequence may be inserted into the reference sequence. These alterations of the reference sequence may occur at the amino or carboxy terminal positions of the reference amino acid sequence of anywhere between those terminal positions, interspersed either individually among residues in the reference sequence or in one or more contiguous, groups within the reference sequence. Again, as noted above, RNA editing may result in a codon change which will result in an expressed protein which differs in “identity” from other proteins expressed from “non-RNA edited” transcripts, which correspond directly to the open reading frame of the genomic sequence. The open reading frame of the T12 and T82 clones are identical, save for a single nucleotide change which results in a single amino acid change (T12—“gag”/Glu v. T82—“aag”/Lys at amino acid residue 447 of SEQ ID NOs: 2 and 4). The T12/T82 clone shows about a 57% identity with the B1 clone at the nucleotide level whereas the T32 clone shows about a 57% identity with the B1 clone at the nucleotide level.
The present invention also relates to recombinant vectors and recombinant hosts, both prokaryotic and eukaryotic, which contain the substantially purified nucleic acid molecules disclosed throughout this specification. The nucleic acid molecules of the present invention encoding a RsGluCl channel protein, in whole or in part, can be linked with other DNA molecules, i.e, DNA molecules to which the RsGluCl coding sequence are not naturally linked, to form “recombinant DNA molecules” which encode a respective RsGluCl channel protein. The novel DNA sequences of the present invention can be inserted into vectors which comprise nucleic acids encoding RsGluCl or a functional equivalent. These vectors may be comprised of DNA or RNA; for most cloning purposes DNA vectors are preferred. Typical vectors include plasmids, modified viruses, bacteriophage, cosmids, yeast artificial chromosomes, and other forms of episomal or integrated DNA that can encode a RsGluCl channel protein. It is well within the purview of the skilled artisan to determine an appropriate vector for a particular gene transfer or other use.
The present invention also relates to a substantially purified form of a respective RsGluCl channel protein, which comprise the amino acid sequence disclosed in
The open reading frames of the T12 and T82 clones are identical, save for a single nucleotide change which results in a single amino acid change at residue 447 of SEQ ID NOs: 2 and 4. The T32 open-reading frame contains two addition exons when compared to the T12/T82 reading frame, which result in a 35 amino acid insertion in the amino terminal region of the T32 protein (amino acid residue 30-64 of SEQ ID NO:6) and another 32 amino acid insertion within the COOH-terminal region (amino acid residue 410-441). The T12/T82 clones show about a 57% identity with the B1 clone at the nucleotide level whereas the T32 clone shows about a 57% identity with the B1 clone at the nucleotide level.
The present invention also relates to biologically active fragments and/or mutants of the RsGluCl1 and RsGluCl2 proteins comprising the amino acid sequence as set forth in SEQ D NOs:2, 4, 6, and 8, including but not necessarily limited to amino acid substitutions, deletions, additions, amino terminal truncations and carboxy-terminal truncations such that these mutations provide for proteins or protein fragments of diagnostic, therapeutic or prophylactic use and would be useful for screening for agonists and/or antagonists of RsGluCl function.
To this end, a preferred aspect of the present invention is a functional RsGluCl channel receptor, comprised of either a single channel protein or a channel comprising multiple subunits, referred to herein as a homomultimeric channel or a heteromultimeric channel. Therefore, a single channel may be comprised of a protein as disclosed in SEQ ID NOs: 2, 4, 6 or 8, or a biologically active equivalent thereof (i.e., an altered channel protein which still functions in a similar fashion to that of a wild-type channel receptor). A homomultimeric channel receptor complex will comprise more than one polypeptide selected from the disclosed group of SEQ ED NOs: 2, 4, 6 and 8, as well as biologically active equivalents. A heteromultimeric channel receptor complex will comprise multiple subunits wherein at least 2 of the 3 proteins disclosed herein contribute to channel formation, or where at least one of the proteins associates with additional proteins or channel components to provide for an active channel receptor complex. Therefore, the present invention additionally relates to substantially purified channels as described herein, as well as substantially purified membrane preparations, partially purified membrane preparations, or cell lysates which contain the functional single, homomultimeric or heteromultimeric channels described herein. These substantially purified, fully processed GluCl channel proteins may be obtained from a recombinant host cell containing a DNA expression vector comprises a nucleotide sequence as set forth in SEQ ID NOs: 1, 3, 5, and/or 7, and expresses the respective RsGluCl precursor protein. It is especially preferred is that the recombinant host cell be a eukaryotic host cell, including but not limited to a mammalian cell line, an insect cell line such as an S2 cell line, or Xenopus oocytes, as noted above.
As with many proteins, it is possible to modify many of the amino acids of RsGluCl channel protein and still retain substantially the same biological activity as the wild type protein. Thus this invention includes modified RsGluCl polypeptides which have amino acid deletions, additions, or substitutions but that still retain substantially the same biological activity as a respective, corresponding RsGluCl. It is generally accepted that single amino acid substitutions do not usually alter the biological activity of a protein (see, e.g., Molecular Biology of the Gene, Watson et al., 1987, Fourth Ed., The Benjamin/Cummings Publishing Co., Inc., page 226; and Cunningham & Wells, 1989, Science 244:1081-1085). Accordingly, the present invention includes polypeptides where one amino acid substitution has been made in SEQ ID NO:2, 4, 6, and/or 8, wherein the polypeptides still retain substantially the same biological activity as a corresponding RsGluCl protein. The present invention also includes polypeptides where two or more amino acid substitutions have been made in SEQ ID NO:2, 4, 6, or 8, wherein the polypeptides still retain substantially the same biological activity as a corresponding RsGluCl protein. In particular, the present invention includes embodiments where the above-described substitutions are conservative substitutions.
One skilled in the art would also recognize that polypeptides that are functional equivalents of RsGluCl and have changes from the RsGluCl amino acid sequence that are small deletions or insertions of amino acids could also be produced by following the same guidelines, (i.e, minimizing the differences in amino acid sequence between RsGluCl and related proteins. Small deletions or insertions are generally in the range of about 1 to 5 amino acids. The effect of such small deletions or insertions on the biological activity of the modified RsGluCl polypeptide can easily be assayed by producing the polypeptide synthetically or by making the required changes in DNA encoding RsGluCl and then expressing the DNA recombinantly and assaying the protein produced by such recombinant expression.
The present invention also includes truncated forms of RsGluCl which contain the region comprising the active site of the enzyme. Such truncated proteins are useful in various assays described herein, for crystallization studies, and for structure-activity-relationship studies.
The present invention also relates to membrane-containing crude lysates or substantially purified subcellular membrane fractions from the recombinant host cells (both prokaryotic and eukaryotic as well as both stably and transiently transformed or transfected cells) which contain the nucleic acid molecules of the present invention. These recombinant host cells express RsGluCl or a functional equivalent, which becomes post translationally associated with the cell membrane in a biologically active fashion. These subcellular membrane fractions will comprise either wild-type or mutant forms of RsGluCl at levels substantially above endogenous levels and hence will be useful in assays to select modulators of RsGluCl proteins or channels. In other words, a specific use for such subcellular membranes involves expression of RsGluCl within the recombinant cell followed by isolation and substantial purification of the membranes away from other cellular components and subsequent use in assays to select for modulators, such as agonist or antagonists of the protein or biologically active channel comprising one or more of the proteins disclosed herein. Alternatively, the lysed cells, containing the membranes, may be used directly in assays to select for modulators of the recombinantly expressed protein(s) disclosed herein. Therefore, another preferred aspect of the present invention relates to a substantially purified membrane preparation or lysed recombinant cell components which include membranes, which has been obtained from a recombinant host cell transformed or transfected with a DNA expression vector which comprises and appropriately expresses a complete open reading frame as set forth in SEQ ID NOs: 1, 3, 5, and/or 7, resulting in a functional form of the respective RsGluCl channel. It is especially preferred is that the recombinant host cell be a eukaryotic host cell, including but not limited to a mammalian cell line, an insect cell line such as an S2 cell line.
The present invention also relates to isolated nucleic acid molecules which are fusion constructions expressing fusion proteins useful in assays to identify compounds which modulate wild-type RsGluCl activity, as well as generating antibodies against RsGluCl. One aspect of this portion of the invention includes, but is not limited to, glutathione S-transferase (GST)-RsGluCl fusion constructs. Recombinant GST-RsGluCl fusion proteins may be expressed in various expression systems, including Spodoptera frugiperda (Sf21) insect cells (Invitrogen) using a baculovirus expression vector (pAcGZr, Phanningen). Another aspect involves RsGluCl fusion constructs linked to various markers, including but not limited to GFP (Green fluorescent protein), the MYC epitope, and GST. Again, any such fusion constructs may be expressed in the cell line of interest and used to screen for modulators of one or more of the RsGluCl proteins disclosed herein.
A preferred aspect for screening for modulators of RsGluCl channel activity is an expression system for the electrophysiological-based assays for measuring glutamate-gated chloride channel activity comprising injecting the DNA molecules of the present invention into Xenopus laevis oocytes. The general use of Xenopus oocytes in the study of ion channel activity is known in the art (Dascal, 1987, Cit. Rev. Biochem. 22: 317-317; Lester, 1988, Science 241: 1057-1063; see also Methods of Enzymology, Vol. 207, 1992, Ch. 14-25, Rudy and Iverson, ed., Academic Press, Inc., New York). An improved method exists for measuring channel activity and modulation by agonists and/or antagonists which is several-fold more sensitive than previous techniques. The Xenopus oocytes are injected with nucleic acid material, including but not limited to DNA, mRNA or cRNA which encode a gated-channel, wherein channel activity may be measured as well as response of the channel to various modulators. Ion channel activity is measured by utilizing a holding potential more positive than the reversal potential for chloride (i.e, greater than −30 mV), preferably about 0 mV. This alteration in assay measurement conditions results in a 10-fold increase in sensitivity of the assay to modulation by ivermectin phosphate. Therefore, this improved assay allows screening and selecting for compounds which modulate GluCl activity at levels which were previously thought to be undetectable.
Any of a variety of procedures may be used to clone RsGluCl. These methods include, but are not limited to, (1) a RACE PCR cloning technique (Frohman, et al., 1988, Proc. Natl. Acad. Sci. USA 85: 8998-9002). 5′ and/or 3′ RACE may be performed to generate a full-length cDNA sequence. This strategy involves using gene-specific oligonucleotide primers for PCR amplification of RsGluCl cDNA. These gene-specific primers are designed through identification of an expressed sequence tag (EST) nucleotide sequence which has been identified by searching any number of publicly available nucleic acid and protein databases; (2) direct functional expression of the RsGluCl cDNA following the construction of a RsGluCl-containing cDNA library in an appropriate expression vector system; (3) screening a RsGluCl-containing cDNA library constructed in a bacteriophage or plasmid shuttle vector with a labeled degenerate oligonucleotide probe designed from the amino acid sequence of the RsGluCl protein; (4) screening a RsGluCl-containing cDNA library constructed in a bacteriophage or plasmid shuttle vector with a partial cDNA encoding the RsGluCl protein. This partial cDNA is obtained by the specific PCR amplification of RsGluCl DNA fragments through the design of degenerate oligonucleotide primers from the amino acid sequence known for other GluCl channels which are related to the RsGluCl protein; (5) screening a RsGluCl-containing cDNA library constructed in a bacteriophage or plasmid shuttle vector with a partial cDNA or oligonucleotide with homology to a RsGluCl protein. This strategy may also involve using gene-specific oligonucleotide primers for PCR amplification of RsGluCl cDNA identified as an EST as described above; or (6) designing 5′ and 3′ gene specific oligonucleotides using SEQ ID NO: 1, 3, and 5 as a template so that either the full-length cDNA may be generated by known RACE techniques, or a portion of the coding region may be generated by these same known RACE techniques to generate and isolate a portion of the coding region to use as a probe to screen one of numerous types of cDNA and/for genomic libraries in order to isolate a full-length version of the nucleotide sequence encoding RsGluCl. Alternatively, the RsGluCl1 and RsGluCl2 cDNAs of the present invention may be cloned as described in Example Section 1. For RsGluCl1 cDNA clones, adult brown dog tick polyp RNA was isolated using the Poly(A)Pure™ mRNA Isolation Kit (Ambion). Tick cDNA was synthesized using oligo-d primers and the ZAP cDNA® Synthesis Kit (Stratagene), and cDNA >1 kb was selected using cDNA Size Fractionation Columns (BRL). A tick cDNA library was constructed in the Lambda ZAP® II vector using the GIGAPACK® III Gold Cloning Kit (Stratagene). A Drosophila GluCl cDNA fragment spanning the M1 to M3 region was used in a low-stringency screen of the tick cDNA library. Filters were exposed for eleven days and six positives were isolated for sequence analysis. Three of the clones (T12, T82 and T32) encode GluCl-related proteins and were sequenced on both ends. For isolation of the RsGluCl2 cDNAs, most molecular procedures were again performed following standard procedures available in references such as Ausubel et. al. (1992. Short protocols in molecular biology. F. M. Ausubel et al.,—2nd. ed. (John Wiley & Sons), and Sambrook et al., (1989. Molecular cloning. A laboratory manual. J. Sambrook, E. F. Fritsch, and T. Maniatis—2 ed. (Cold Spring Harbor Laboratory Press). Poly (A)+ RNA was isolated from Tick heads. First strand cDNA was synthesized from 50 ng RNA using a SUPERSCRIPT preamplification System (Life Technologies). A tenth of the first strand reaction was used for PCR. The degenerate oligos utilized were designed based on sequences obtained from C elegans, Drosophila, and Flea (C. felis) GluCls: Two PCR rounds, using the combinations “27F2+3AF1, then 27F2+3BF2” were performed. One tenth of the PCR reaction products was tested by Southern blot analysis, in order to identify and prevent the PCR-cloning of contaminating sequences. Novel PCR products of the appropriate size were cloned into the pCR2.1 plasmid vector using a “TA” cloning kit (Invitrogen, Inc.). Following sequence analysis (ABI Prism, PE Applied Biosystems), selected PCR clone inserts were radiolabelled and used as probes to screen a cDNA library generated into the Uni-ZAP® vector (Stratagene, Inc.) from using the RNA preparation mentioned above. Sequences from full-length cDNA clones were analysed using the GCG Inc. package. Subcloning of RsGluCl2 into a mammalian expression vector was done by excision of an 1.85 kb coding-region-containing fragment (XhoI-EcoRI digest) from the original insert of clone RsGluCl2 B1 from the UniZap® pBS plasmid, followed by ligation into the TetSplice® vector (Life Technologies Inc.).
It is readily apparent to those skilled in the art that other types of libraries, as well as libraries constructed from other cell types or species types, may be useful for isolating a RsGluCl-encoding DNA or a RsGluCl homologue. Other types of libraries include, but are not limited to, cDNA libraries derived from other brown dog tick cell types.
It is readily apparent to those skilled in the art that suitable cDNA libraries may be prepared from cells or cell lines which have RsGluCl activity. The selection of cells or cell lines for use in preparing a cDNA library to isolate a cDNA encoding RsGluCl may be done by first measuring cell-associated RsGluCl activity using any known assay available for such a purpose.
Preparation of cDNA Libraries can be Performed by Standard Techniques Well known in the art. Well known cDNA library construction techniques can be found for example, in Sambrook et al., 1989, Molecular Cloning: A Laboratory Manual; Cold Spring Harbor Laboratory, Cold Spring Harbor, N.Y. Complementary DNA libraries may also be obtained from numerous commercial sources, including but not limited to Clontech Laboratories, Inc. and Stratagene.
It is also readily apparent to those skilled in the art that DNA encoding RsGluCl may also be isolated from a suitable genomic DNA library. Construction of genomic DNA libraries can be performed by standard techniques well known in the art. Well known genomic DNA library construction techniques can be found in Sambrook, et al., supra. One may prepare genomic libraries, especially in P1 artificial chromosome vectors, from which genomic clones containing the RsGluCl can be isolated, using probes based upon the RsGluCl nucleotide sequences disclosed herein. Methods of preparing such libraries are known in the art (Ioannou et al., 1994, Nature Genet. 6:84-89).
In order to clone a RsGluCl gene by one of the preferred methods, the amino acid sequence or DNA sequence of a RsGluCl or a homologous protein may be necessary. To accomplish this, a respective RsGluCl channel protein may be purified and the partial amino acid sequence determined by automated sequenators. It is not necessary to determine the entire amino acid sequence, but the linear sequence of two regions of 6 to 8 amino acids can be determined for the PCR amplification of a partial RsGluCl DNA fragment. Once suitable amino acid sequences have been identified, the DNA sequences capable of encoding them are synthesized. Because the genetic code is degenerate, more than one codon may be used to encode a particular amino acid, and therefore, the amino acid sequence can be encoded by any of a set of similar DNA oligonucleotides. Only one member of the set will be identical to the RsGluCl sequence but others in the set will be capable of hybridizing to RsGluCl DNA even in the presence of DNA oligonucleotides with mismatches. The mismatched DNA oligonucleotides may still sufficiently hybridize to the RsGluCl DNA to permit identification and isolation of RsGluCl encoding DNA. Alternatively, the nucleotide sequence of a region of an expressed sequence may be identified by searching one or more available genomic databases. Gene-specific primers may be used to perform PCR amplification of a cDNA of interest from either a cDNA library or a population of cDNAs. As noted above, the appropriate nucleotide sequence for use in a PCR-based method may be obtained from SEQ ID NO: 1, 3, 5, or 7 either for the purpose of isolating overlapping 5′ and 3′RACE products for generation of a full-length sequence coding for RsGluCl, or to isolate a portion of the nucleotide sequence coding for RsGluCl for use as a probe to screen one or more cDNA- or genomic-based libraries to isolate a full-length sequence encoding RsGluCl or RsGluCl-like proteins.
This invention also includes vectors containing a RsGluCl gene, host cells containing the vectors, and methods of making substantially pure RsGluCl protein comprising the steps of introducing the RsGluCl gene into a host cell, and cultivating the host cell under appropriate conditions such that RsGluCl is produced. The RsGluCl so produced may be harvested from the host cells in conventional ways. Therefore, the present invention also relates to methods of expressing the RsGluCl protein and biological equivalents disclosed herein, assays employing these gene products, recombinant host cells which comprise DNA constructs which express these proteins, and compounds identified through these assays which act as agonists or antagonists of RsGluCl activity.
The cloned RsGluCl cDNA obtained through the methods described above may be recombinantly expressed by molecular cloning into an expression vector (such as pcDNA3.neo, pcDNA3.1, pCR2.1, pBlueBacHis2 or pLITMUS28, as well as other examples, listed infra) containing a suitable promoter and other appropriate transcription regulatory elements, and transferred into prokaryotic or eukaryotic host cells to produce recombinant RsGluCl. Expression vectors are defined herein as DNA sequences that are required for the transcription of cloned DNA and the translation of their mRNAs in an appropriate host. Such vectors can be used to express eukaryotic DNA in a variety of hosts such as bacteria, blue green algae, plant cells, insect cells and animal cells. Specifically designed vectors allow the shuttling of DNA between hosts such as bacteria-yeast or bacteria-animal cells. An appropriately constructed expression vector should contain: an origin of replication for autonomous replication in host cells, selectable markers, a limited number of useful restriction enzyme sites, a potential for high copy number, and active promoters. A promoter is defined as a DNA sequence that directs RNA polymerase to bind to DNA and initiate RNA synthesis. A strong promoter is one which causes mRNAs to be initiated at high frequency. To determine the RsGluCl cDNA sequence(s) that yields optimal levels of RsGluCl, cDNA molecules including but not limited to the following can be constructed: a cDNA fragment containing the full-length open reading frame for RsGluCl as well as various constructs containing portions of the cDNA encoding only specific domains of the protein or rearranged domains of the protein. All constructs can be designed to contain none, all or portions of the 5′ and/or 3′ untranslated region of a RsGluCl cDNA. The expression levels and activity of RsGluCl can be determined following the introduction, both singly and in combination, of these constructs into appropriate host cells. Following determination of the RsGluCl cDNA cassette yielding optimal expression in transient assays, this RsGluCl cDNA construct is transferred to a variety of expression vectors (including recombinant viruses), including but not limited to those for mammalian cells, plant cells, insect cells, oocytes, bacteria, and yeast cells. Techniques for such manipulations can be found described in Sambrook, et al., supra, are well known and available to the artisan of ordinary skill in the art. Therefore, another aspect of the present invention includes host cells that have been engineered to contain and/or express DNA sequences encoding the RsGluCl. An expression vector containing DNA encoding a RsGluCl-like protein may be used for expression of RsGluCl in a recombinant host cell. Such recombinant host cells can be cultured under suitable conditions to produce RsGluCl or a biologically equivalent form. Expression vectors may include, but are not limited to, cloning vectors, modified cloning vectors, specifically designed plasmids or viruses. Commercially available mammalian expression vectors which may be suitable for recombinant RsGluCl expression, include but are not limited to, pcDNA3.neo (Invitrogen), pcDNA3.1 (Invitrogen), pCI-neo (Promega), pLITMUS28, pLITMUS29, pLITMUS38 and pLITMUS39 (New England Bioloabs), pcDNAI, pcDNAIamp (Invitrogen), pcDNA3 (Invitrogen), pMC1neo (Stratagene), pXT1 (Stratagene), pSG5 (Stratagene), EBO-pSV2-neo (ATCC 37593) pBPV-1 (8-2) (ATCC 37110), pdjBPV-MMneo(342-12) (ATCC 37224), pRSVgpt (ATCC 37199), pRSVneo (ATCC 37198), pSV2-dhfr (ATCC 37146), pUCTag (ATCC 37460), and IZD35 (ATCC 37565). Also, a variety of bacterial expression vectors may be used to express recombinant RsGluCl in bacterial cells. Commercially available bacterial expression vectors which may be suitable for recombinant RsGluCl expression include, but are not limited to pCR2.1 (Invitrogen), pEBT11a (Novagen), lambda gt11 (Invitrogen), and pKK223-3 (Pharmacia). In addition, a variety of fungal cell expression vectors may be used to express recombinant RsGluCl in fungal cells. Commercially available fungal cell expression vectors which may be suitable for recombinant RsGluCl expression include but are not limited to pYES2 Invitrogen) and Pichia expression vector (Invitrogen). Also, a variety of insect cell expression vectors may be used to express recombinant protein in insect cells. Commercially available insect cell expression vectors which may be suitable for recombinant expression of RsGluCl include but are not limited to pBlueBacIIIand pBlueBacHis2 (Invitrogen), and pAcG2T (Pharmingen).
Recombinant host cells may be prokaryotic or eukaryotic, including but not limited to, bacteria such as E. coli, fungal cells such as yeast, mammalian cells including, but not limited to, cell lines of bovine, porcine, monkey and rodent origin; and insect cells including but not limited to R. sanguineus and silkworm derived cell lines. For instance, one insect expression system utilizes Spodoptera frugiperda (Sf21) insect cells (invitrogen) in tandem with a baculovirus expression vector (pAcG2T, Pharmingen). Also, mammalian species which may be suitable and which are commercially available, include but are not limited to, L cells L-M(TK−) (ATCC CCL 1.3), L cells L-M (ATCC CCL 1.2), Saos-2 (ATCC RTB-85), 293 (ATCC CRL 1573), Raji (ATCC CCL 86), CV-1 (ATCC CCL 70), COS-1 (ATCC CRL 1650), COS-7 (ATCC CRL 1651), CHO-1 (ATCC CCL 61), 3T3 (ATCC CCL 92), NIH/3T3 (ATCC CRL 1658), HeLa (ATCC CCL 2), C1271 (ATCC CRL 1616), BS-C-1 (ATCC CCL 26), MRC-5 (ATCC CCL 171) and CPAE (ATCC CCL 209).
The specificity of binding of compounds showing affinity for RsGluCl is shown by measuring the affinity of the compounds for recombinant cells expressing the cloned receptor or for membranes from these cells, which form a functional single, homomultimeric or heteromultimeric membrane channel. Expression of the cloned receptor and screening for compounds that bind to RsGluCl or that inhibit the binding of a known, radiolabeled ligand of RsGluCl to these cells, or membranes prepared from these cells, provides an effective method for the rapid selection of compounds with high affinity for RsGluCl. Such ligands need not necessarily be radiolabeled but can also be nonisotopic compounds that can be used to displace bound radiolabeled compounds or that can be used as activators in functional assays. Compounds identified by the above method are likely to be agonists or antagonists of RsGluCl and may be peptides, proteins, or non-proteinaceous organic or inorganic molecules.
A preferred aspect for screening for modulators of RsGluCl channel activity is an expression system for electrophysiologically-based assays for measuring ligand gated channel activity (such as GluCl channel activity) comprising injecting the DNA or RNA molecules of the present invention into Xenopus laevis oocytes. The general use of Xenopus oocytes in the study of ion channel activity is known in the art (Dascal, 1987, Crit. Rev. Biochem. 22:317-317; Lester, 1988, Science 241: 1057-1063; see also Methods of Enzymology, Vol. 207, 1992, Ch. 1425, Rudy and Iverson, ed., Academic Press, Inc., New York). The Xenopus oocytes are injected with nucleic acid material, including but not limited to DNA, mRNA or cRNA which encode a ligand gated-channel, whereafter channel activity may be measured as well as response of the channel to various modulators.
Accordingly, the present invention is directed to methods for screening for compounds which modulate the expression of DNA or RNA encoding a RsGluCl protein as well as compounds which effect the function of the RsGluCl protein. Methods for identifying agonists and antagonists of other receptors are well known in the art and can be adapted to identify agonists and antagonists of a RsGluCl channel. For example, Cascieri et al. (1992, Molec. Pharmacol. 41:109&1099) describe a method for identifying substances that inhibit agonist binding to rat neurokinin receptors and thus are potential agonists or antagonists of neurokinin receptors. The method involves transfecting COS cells with expression vectors containing rat neurokinin receptors, allowing the transfected cells to grow for a time sufficient to allow the neurokinin receptors to be expressed, harvesting the transfected cells and resuspending the cells in assay buffer containing a known radioactively labeled agonist of the neurokinin receptors either in the presence or the absence of the substance, and then measuring the binding of the radioactively labeled known agonist of the neurokinin receptor to the neurokinin receptor. If the amount of binding of the known agonist is less in the presence of the substance than in the absence of the substance, then the substance is a potential ligand of the neurokinin receptor. Where binding of the substance such as an agonist or antagonist to RsGluCl is measured, such binding can be measured by employing a labeled ligand. The ligand can be labeled in any convenient manner known to the art, e.g., radioactively, fluorescently, enzymatically.
Therefore, the present invention is directed to methods for screening for compounds which modulate the expression of DNA or RNA encoding a RsGluCl protein. Compounds which modulate these activities may be DNA, RNA, peptides, proteins, or non-proteinaceous organic or inorganic molecules. Compounds may modulate by increasing or attenuating the expression of DNA or RNA encoding RsGluCl, or the function of the RsGluCl-based channels. Compounds that modulate the expression of DNA or RNA encoding RsGluCl or the biological function thereof may be detected by a variety of assays. The assay may be a simple “yes/no” assay to determine whether there is a change in expression or function. The assay may be made quantitative by comparing the expression or function of a test sample with the levels of expression or function in a standard sample. Kits containing RsGluCl, antibodies to RsGluCl, or modified RsGluCl may be prepared by known methods for such uses.
To this end, the present invention relates in part to methods of identifying a substance which modulates RsGluCl receptor activity, which involves:
(a) adding a test substance in the presence and absence of a RsGluCl receptor protein wherein said RsGluCl receptor protein comprises the amino acid sequence as set forth in SEQ ID NOs: 2, 6 and/or 8; and,
(b) measuring and comparing the effect of the test substance in the presence and absence of the RsGluCl receptor protein or respective functional channel.
In addition, several specific embodiments are disclosed herein to show the diverse types of screening or selection assays which the skilled artisan may utilize in tandem with an expression vector directing the expression of the RsGluCl receptor protein. Methods for identifying ligands of other receptors are well known in the art and can be adapted to ligands of RsGluCl. Therefore, these embodiments are presented as examples and not as limitations. To this end, the present invention includes assays by which RsGluCl modulators (such as agonists and antagonists) may be identified. Accordingly, the present invention includes a method for determining whether a substance is a potential agonist or antagonist of RsGluCl that comprises:
(a) transfecting or transforming cells with an expression vector that directs expression of RsGluCl in the cells, resulting in test cells;
(b) allowing the test cells to grow for a time sufficient to allow RsGluCl to be expressed and for a functional channel to be generated;
(c) exposing the cells to a labeled ligand of RsGluCl in the presence and in the absence of the substance;
(d) measuring the binding of the labeled ligand to the RsGluCl channel; where if the amount of binding of the labeled ligand is less in the presence of the substance than in the absence of the substance, then the substance is a potential ligand of RsGluCl.
The conditions under which step (c) of the method is practiced are conditions that are typically used in the art for the study of protein-ligand interactions: e.g., physiological pH; salt conditions such as those represented by such commonly used buffers as PBS or in tissue culture media; a temperature of about 4° C. to about 55° C. The test cells may be harvested and resuspended in the presence of the substance and the labeled ligand. In a modification of the above-described method, step (c) is modified in that the cells are not harvested and resuspended but rather the radioactively labeled known agonist and the substance are contacted with the cells while the cells are attached to a substratum, e.g., tissue culture plates.
The present invention also includes a method for determining whether a substance is capable of binding to RsGluCl, i.e., whether the substance is a potential modulator of RsGluCl channel activation, where the method comprises:
(a) transfecting or transforming cells with an expression vector that directs the expression of RsGluCl in the cells, resulting in test cells;
(b) exposing the test cells to the substance;
(c) measuring the amount of binding of the substance to RsGluCl;
(d) comparing the amount of binding of the substance to RsGluCl in the test cells with the amount of binding of the substance to control cells that have not been transfected with RsGluCl;
wherein if the amount of binding of the substance is greater in the test cells as compared to the control cells, the substance is capable of binding to RsGluCl. Determining whether the substance is actually an agonist or antagonist can then be accomplished by the use of functional assays, such as an electrophysiological assay described herein.
The conditions under which step (b) of the method is practiced are conditions that are typically used in the art for the study of protein-ligand interactions: e.g., physiological pH; salt conditions such as those represented by such commonly used buffers as PBS or in tissue culture media; a temperature of about 4° C. to about 55° C. The test cells are harvested and resuspended in the presence of the substance.
The above described assays may be functional assays, where electrophysiological assays (e.g., see Example 2) may be carried out in transfected mammalian cell lines, an insect cell line, or Xenopus oocytes to measure the various effects test compounds may have on the ability of a known ligand (such as glutamate) to activate the channel, or for a test compound to modulate activity in and of itself (similar to the effect of ivermectin on known GluCl channels). Therefore, the skilled artisan will be comfortable adapting the cDNA clones of the present invention to known methodology for both initial and secondary screens to select for compounds that bind and/or activate the functional RsGluCl channels of the present invention.
A preferred method of identifying a modulator of a RsGluCl channel protein comprise firstly contacting a test compound with a R. sanguiizeus RsGluCl channel protein selected from the group consisting of SEQ ID NOs:2, 4, 6 and 8; and, secondly measuring the effect of the test compound on the RsGluCl channel protein. A preferred aspect involves using a R. sanguineus RsGluCl protein which is a product of a DNA expression vector contained within a recombinant host cell.
Another preferred method of identifying a compound that modulates RsGluCl glutamate-gated channel protein activity comprises firstly injecting into a host cell a population of nucleic acid molecules, at least a portion of which encodes a R. sanguineus GluCl channel protein selected from the group consisting of SEQ ID NOs:2, 4, 6 and 8, such that expression of said portion of nucleic acid molecules results in an active ligand-gated channel, secondly measuring host cell membrane-current in the presence and absense of a test compound. Numerous templates may be used, including but not limited to complementary DNA, poly A+ messenger RNA and complementary RNA.
The DNA molecules, RNA molecules, recombinant protein and antibodies of the present invention may be used to screen and measure levels of RsGluCl. The recombinant proteins, DNA molecules, RNA molecules and antibodies lend themselves to the formulation of kits suitable for the detection and typing of RsGluCl. Such a kit would comprise a compartmentalized carrier suitable to hold in close confinement at least one container. The carrier would further comprise reagents such as recombinant RsGluCl or anti-RsGluCl antibodies suitable for detecting RsGluCl. The carrier may also contain a means for detection such as labeled antigen or enzyme substrates or the like.
The assays described herein can be carried out with cells that have been transiently or stably transfected with RsGluCl. The expression vector may be introduced into host cells via any one of a number of techniques including but not limited to transformation, transfection, protoplast fusion, and electroporation. Transfection is meant to include any method known in the art for introducing RsGluCl into the test cells. For example, transfection includes calcium phosphate or calcium chloride mediated transfection, lipofection, infection with a retroviral construct containing RsGluCl, and electroporation. The expression vector-containing cells are individually analyzed to determine whether they produce RsGluCl protein. Identification of RsGluCl expressing cells may be done by several means, including but not limited to immunological reactivity with anti-RsGluCl antibodies, labeled ligand binding, or the presence of functional, non-endogenous RsGluCl activity.
The specificity of binding of compounds showing affinity for RsGluCl is shown by measuring the affinity of the compounds for recombinant cells expressing the cloned receptor or for membranes from these cells. Expression of the cloned receptor and screening for compounds that bind to RsGluCl or that inhibit the binding of a known, ligand of RsGluCl to these cells, or membranes prepared from these cells, provides an effective method for the rapid selection of compounds with high affinity for RsGluCl. Such ligands need not necessarily be radiolabeled but can also be nonisotopic compounds that can be used to displace bound radioactively, fluorescently or enzymatically labeled compounds or that can be used as activators in functional assays. Compounds identified by the above method are likely to be agonists or antagonists of RsGluCl.
Therefore, the specificity of binding of compounds having affinity for RsGluCl is shown by measuring the affinity of the compounds for recombinant cells expressing the cloned receptor or for membranes from these cells. Expression of the cloned receptor and screening for compounds that bind to RsGluCl or that inhibit the binding of a known, radiolabeled ligand of RsGluCl (such as glutamate, ivernectin or nodulisporic acid) to these cells, or membranes prepared from these cells, provides an effective method for the rapid selection of compounds with high affinity for RsGluCl. Such ligands need not necessarily be radiolabeled but can also be nonisotopic compounds that can be used to displace bound radioactively, fluorescently or enzymatically labeled compounds or that can be used as activators in functional assays. Compounds identified by the above method again are likely to be agonists or antagonists of RsGluCl. As noted elsewhere in this specification, compounds may modulate by increasing or attenuating the expression of DNA or RNA encoding RsGluCl, or by acting as an agonist or antagonist of the RsGluCl receptor protein. Again, these compounds that modulate the expression of DNA or RNA encoding RsGluCl or the biological function thereof may be detected by a variety of assays. The assay may be a simple “yes/no” assay to determine whether there is a change in expression or function. The assay may be made quantitative by comparing the expression or function of a test sample with the levels of expression or function in a standard sample.
RsGluCl1 and/or 2 gated chloride channel functional assays measure one or more ligand-gated chloride channel activities where the channel is made up in whole, or in part, by the RsGluCl channel. RsGluCl channel activity can be measured using the channel described herein by itself; or as a subunit in combination with one or more additional ligand-gated chloride channel subunits (preferably one or more RsGluCl), where the subunits combine together to provide functional channel activity. Assays measuring RsGluCl-gated chloride channel activity include functional screening using 36Cl, functional screening using patch clamp electrophysiology and functional screening using fluorescent dyes. Techniques for carrying out such assays in general are well known in the art. (See, for example, Smith et al., 1998, European Journal of Pharmacology 159:261-269; Gonzalez and Tsien, 1997, Chemistry & Biology 4:269-277; Millar et al., 1994, Proc. R. Soc. Lond. B. 258:307-314; Rauh et al., 1990 TiPS 11:325-329, and Tsien et al., U.S. Pat. No. 5,661,035.) Functional assays can be performed using individual compounds or preparations containing different compounds. A preparation containing different compounds where one or more compounds affect RsGluCl channel activity can be divided into smaller groups of compounds to identify the compound(s) affecting RsGluCl channel activity. In an, embodiment of the present invention a test preparation containing at least 10 compounds is used in a functional assay. Recombinantly produced RsGluCl channels present in different environments can be used in a functional assay. Suitable environments include live cells and purified cell extracts containing the RsGluCl channel and an appropriate membrane for activity; and the use of a purified RsGluCl channel produced by recombinant means that is introduced into a different environment suitable for measuring RsGluCl channel activity. RsGluCl derivatives can be used to assay for compounds active at the channel and to obtain information concerning different regions of the channel. For example, RsGluCl channel derivatives can be produced where amino acid regions in the native channel are altered and the effect of the alteration on channel activity can be measured to obtain information regarding different channel regions.
Expression of RsGluCl DNA may also be performed using in vitro produced synthetic mRNA. Synthetic mRNA can be efficiently translated in various cell-free systems, including but not limited to wheat germ extracts and reticulocyte extracts, as well as efficiently translated in cell based systems, including but not limited to microinjection into frog oocytes, with microinjection into frog oocytes being preferred.
Following expression of RsGluCl in a host cell, RsGluCl protein may be recovered to provide RsGluCl protein in active form. Several RsGluCl protein purification procedures are available and suitable for use. Recombinant RsGluCl protein may be purified from cell lysates and extracts by various combinations of, or individual application of salt fractionation, ion exchange chromatography, size exclusion chromatography, hydroxylapatite adsorption chromatography and hydrophobic interaction chromatography. In addition, recombinant RsGluCl protein can be separated from other cellular proteins by use of an immunoaffinity-column made with monoclonal or polyclonal antibodies specific for full-length RsGluCl protein, or polypeptide fragments of RsGluCl protein.
Expression of RsGluCl DNA may also be performed using in vitro produced synthetic mRNA. Synthetic mRNA can be efficiently translated in various cell-free systems, including but not limited to wheat germ extracts and reticulocyte extracts, as well as efficiently translated in cell based systems, including but not limited to microinjection into frog oocytes, with microinjection into frog oocytes being preferred.
Following expression of RsGluCl in a host cell, RsGluCl protein may be recovered to provide RsGluCl protein in active form. Several RsGluCl protein purification procedures are available and suitable for use. Recombinant RsGluCl protein may be purified from cell lysates and extracts by various combinations of, or individual application of salt fractionation, ion exchange chromatography, size exclusion chromatography, hydroxylapatite adsorption chromatography and hydrophobic interaction chromatography. In addition, recombinant RsGluCl protein can be separated from other cellular proteins by use of an immunoaffinity column made with monoclonal or polyclonal antibodies specific for full-length RsGluCl protein, or polypeptide fragments of RsGluCl protein.
Polyclonal or monoclonal antibodies may be raised against RsGluCl1 or RsGluCl2 or a synthetic peptide (usually from about 9 to about 25 amino acids in length) from a portion of RsGluCl or RsGluCl2 as disclosed in SEQ ID NOs:2, 4, 6 and/or 8. Monospecific antibodies to RsGluCl are purified from mammalian antisera containing antibodies reactive against RsGluCl or are prepared as monoclonal antibodies reactive with RsGluCl using the technique of Kohler and Milstein (1975, Nature 256: 495-497). Monospecific antibody as used herein is defined as a single antibody species or multiple antibody species with homogenous binding characteristics for RsGluCl. Homogenous binding as used herein refers to the ability of the antibody species to bind to a specific antigen or epitope, such as those associated with RsGluCl, as described above. Human RsGluCl-specific antibodies are raised by immunizing animals such as mice, rats, guinea pigs, rabbits, goats, horses and the like, with an appropriate concentration of RsGluCl protein or a synthetic peptide generated from a portion of RsGluCl with or without an immune adjuvant.
Preimmune serum is collected prior to the first immunization. Each animal receives between about 0.1 mg and about 1000 mg of RsGluCl protein associated with an acceptable immune adjuvant. Such acceptable adjuvants include, but are not limited to, Freund's complete, Freund's incomplete, alum-precipitate, water in oil emulsion containing Corynebacterium parvum and tRNA. The initial immunization consists of RsGluCl protein or peptide fragment thereof in, preferably, Freund's complete adjuvant at multiple sites either subcutaneously (SC), intraperitoneally (IP) or both. Each animal is bled at regular intervals, preferably weekly, to determine antibody titer. The animals may or may not receive booster injections following the initial immunization. Those animals receiving booster injections are generally given an equal amount of RsGluCl in Freund's incomplete adjuvant by the same route. Booster injections are given at about three week intervals until maximal titers are obtained. At about 7 days after each booster immunization or about weekly after a single immunization, the animals are bled, the serum collected, and aliquots are stored at about −20° C.
Monoclonal antibodies (mAb) reactive with RsGluCl are prepared by immunizing inbred mice, preferably Balb/c, with RsGluCl protein. The mice are immunized by the IP or SC route with about 1 mg to about 100 mg, preferably about 10 mg, of RsGluCl protein in about 0.5 ml buffer or saline incorporated in an equal volume of an acceptable adjuvant, as discussed above. Freund's complete adjuvant is preferred. The mice receive an initial immunization on day 0 and are rested for about 3 to about 30 weeks. Immunized mice are given one or more booster immunizations of about 1 to about 100 mg of RsGluCl in a buffer solution such as phosphate buffered saline by the intravenous (IV) route. Lymphocytes, from antibody positive mice, preferably splenic lymphocytes, are obtained by removing spleens from immunized mice by standard procedures known in the art. Hybridoma cells are produced by mixing the splenic lymphocytes with an appropriate fusion partner, preferably myeloma cells, under conditions which will allow the formation of stable hybridomas. Fusion partners may include, but are not limited to: mouse myelomas P3/NS1 μg 4-1; MPC-11; S-194 and Sp 2/0, with Sp 210 being preferred. The antibody producing cells and myeloma cells are fused in polyethylene glycol, about 1000 mol. wt., at concentrations from about 30% to about 50%. Fused hybridoma cells are selected by growth in hypoxanthine, thymidine and aminopterin supplemented Dulbecco's Modified Eagles Medium (DMEM) by procedures known in the art. Supernatant fluids are collected form growth positive wells on about days 14, 18, and 21 and are screened for antibody production by an immunoassay such as solid phase immunoradioassay (SPIRA) using RsGluCl as the antigen. The culture fluids are also tested in the Ouchterlony precipitation assay to determine the isotype of the mAb. Hybridoma cells from antibody positive wells are cloned by a technique such as the soft agar technique of MacPherson, 1973, Soft Agar Techniques, in Tissue Culture Methods and Applications, Kruse and Paterson, Eds., Academic Press.
Monoclonal antibodies are produced in vivo by injection of pristine primed Balb/c mice, approximately 0.5 ml per mouse, with about 2×106 to about 6×106 hybridoma cells about 4 days after priming. Ascites fluid is collected at approximately 8-12 days after cell transfer and the monoclonal antibodies are purified by techniques known in the art.
In vitro production of anti-RsGluCl mAb is carried out by growing the hybridoma in DMEM containing about 2% fetal calf serum to obtain sufficient quantities of the specific mAb. The mAb are purified by techniques known in the art.
Antibody titers of ascites or hybridoma culture fluids are determined by various serological or immunological assays which include, but are not limited to, precipitation, passive agglutination, enzyme-linked immunosorbent antibody (ELISA) technique and radioimmunoassay (RIA) techniques. Similar assays are used to detect the presence of RsGluCl in body fluids or tissue and cell extracts.
It is readily apparent to those skilled in the art that the above described methods for producing monospecific antibodies may be utilized to produce antibodies specific for RsGluCl peptide fragments, or a respective full-length RsGluCl.
RsGluCl antibody affinity columns are made, for example, by adding the antibodies to Affigel-10 (Biorad), a gel support which is pre-activated with N-hydroxysuccinimide esters such that the antibodies form covalent linkages with the agarose gel bead support. The antibodies are then coupled to the gel via amide bonds with the spacer arm. The remaining activated esters are then quenched with 1M ethanolamine HCl (pH 8). The column is washed with water followed by 0.23 M glycine HCl (pH 2.6) to remove any non-conjugated antibody or extraneous protein. The column is then equilibrated in phosphate buffered saline (pH 7.3) and the cell culture supernatants or cell extracts containing full-length RsGluCl or RsGluCl protein fragments are slowly passed through the column. The column is then washed with phosphate buffered saline until the optical density (A280) falls to background, then the protein is eluted with 0.23 M glycine-HCl (pH 2.6). The purified RsGluCl protein is then dialyzed against phosphate buffered saline.
The present invention also relates to a non-human transgenic animal which is useful for studying the ability of a variety of compounds to act as modulators of RsGluCl, or any alternative functional RsGluCl channel in vivo by providing cells for culture, in vitro. In reference to the transgenic animals of this invention, reference is made to transgenes and genes. As used herein, a transgene is a genetic construct including a gene. The transgene is integrated into one or more chromosomes in the cells in an animal by methods known in the art. Once integrated, the transgene is carried in at least one place in the chromosomes of a transgenic animal. Of course, a gene is a nucleotide sequence that encodes a protein, such as one or a combination of the cDNA clones described herein. The gene and/or transgene may also include genetic regulatory elements and/or structural elements known in the art A type of target cell for transgene introduction is the embryonic stem cell (ES). ES cells can be obtained from pre-implantation embryos cultured in vitro and fused with embryos (Evans et al., 1981, Nature 292:154-156; Bradley et al., 1984, Nature 309:255-258; Gossler et al., 1986, Proc. Natl. Acad. Sci. USA 83:9065-9069; and Robertson et al., 1986 Nature 322:445-448). Transgenes can be efficiently introduced into the ES cells by a variety of standard techniques such as DNA transfection, microinjection, or by retrovirus-mediated transduction. The resultant transformed ES cells can thereafter be combined with blastocysts from a non-human animal. The introduced ES cells thereafter colonize the embryo and contribute to the germ line of the resulting chimeric animal (Jaenisch, 1988, Science 240: 1468-1474). It will also be within the purview of the skilled artisan to produce transgenic or knock-out invertebrate animals (e.g., C. elegans) which express the RsGluCl transgene in a wild type C. elegans GluCl background as well in C. elegans mutants knocked out for one or both of the C. elegans GluCl subunits.
Pharmaceutically useful compositions comprising modulators of RsGluCl may be formulated according to known methods such as by the admixture of a pharmaceutically acceptable carrier. Examples of such carriers and methods of formulation may be found in Remington's Pharmaceutical Sciences. To form a pharmaceutically acceptable composition suitable for effective administration, such compositions will contain an effective amount of the protein, DNA, RNA, modified RsGluCl, or either RsGluCl agonists or antagonists including tyrosine kinase activators or inhibitors.
Therapeutic or diagnostic compositions of the invention are administered to an individual in amounts sufficient to treat or diagnose disorders. The effective amount may vary according to a variety of factors such as the individual's condition, weight, sex and age. Other factors include the mode of administration.
The pharmaceutical compositions may be provided to the individual by a variety of routes such as subcutaneous, topical, oral and intramuscular.
The term “chemical derivative” describes a molecule that contains additional chemical moieties which are not normally a part of the base molecule. Such moieties may improve the solubility, half-life, absorption, etc. of the base molecule. Alternatively the moieties may attenuate undesirable side effects of the base molecule or decrease the toxicity of the base molecule. Examples of such moieties are described in a variety of texts, such as Remington's Pharmaceutical Sciences.
Compounds identified according to the methods disclosed herein may be used alone at appropriate dosages. Alternatively, co-administration or sequential administration of other agents may be desirable.
The present invention also has the objective of providing suitable topical, oral, systemic and parenteral pharmaceutical formulations for use in the novel methods of treatment of the present invention. The compositions containing compounds identified according to this invention as the active ingredient can be administered in a wide variety of therapeutic dosage forms in conventional vehicles for administration. For example, the compounds can be administered in such oral dosage forms as tablets, capsules (each including timed release and sustained release formulations), pills, powders, granules, elixirs, tinctures, solutions, suspensions, syrups and emulsions, or by injection. Likewise, they may also be administered in intravenous (both bolus and infusion), intraperitoneal, subcutaneous, topical with or without occlusion, or intramuscular form, all using forms well known to those of ordinary skill in the pharmaceutical arts.
Advantageously, compounds of the present invention may be administered in a single daily dose, or the total daily dosage may be administered in divided doses of two, three or four times daily. Furthermore, compounds for the present invention can be administered in intranasal form via topical use of suitable intranasal vehicles, or via transdermal routes, using those forms of transdermal skin patches well known to those of ordinary skill in that art. To be administered in the form of a transdermal delivery system, the dosage administration will, of course, be continuous rather than intermittent throughout the dosage regimen.
For combination treatment with more than one active agent, where the active agents are in separate dosage formulations, the active agents can be administered concurrently, or they each can be administered at separately staggered times.
The dosage regimen utilizing the compounds of the present invention is selected in accordance with a variety of factors including type, species, age, weight, sex and medical condition of the patient; the severity of the condition to be treated; the route of administration; the renal, hepatic and cardiovascular function of the 1 patient; and the particular compound thereof employed. A physician or veterinarian of ordinary skill can readily determine and prescribe the effective amount of the drug required to prevent, counter or arrest the progress of the condition. Optimal precision in achieving concentrations of drug within the range that yields efficacy without toxicity requires a regimen based on the kinetics of the drug's availability to target sites. This involves a consideration of the distribution, equilibrium, and elimination of a drug.
The following examples are provided to illustrate the present invention without, however, limiting the same hereto.
Most molecular procedures were performed following standard procedures available in references such as Ausubel et. al. (1992. Short protocols in molecular biology. F. M. Ausubel et al.,—2nd. ed. (John Wiley & Sons), and Sambrook et al. (1989. Molecular cloning. A laboratory manual. J. Sambrook, E. F. Fritsch, and T. Maniatis—2nd ed. (Cold Spring Harbor Laboratory Press).
RsGluCl1—Adult brown dog tick polyA+ RNA was isolated using the Poly(A)Pure™ mRNA Isolation Kit (Ambion). Tick cDNA was synthesized using oligo-dT primers and the ZAP cDNA® Synthesis Kit (Stratagene), and cDNA >1 kb was selected using cDNA Size Fractionation Columns (BRL). A tick cDNA library was constructed in the Lambda ZAP® II vector using the GIGAPACK™ III Gold Cloning Kit (Stratagene). A Drosophila GluCl cDNA fragment spanning the M1 to M3 region was used in a low-stringency screen [25% v/v formamide/5×SSCP (1XSSCP=120 mM NaCl/15 mM sodium citrate/20 mM sodium phosphate, pH 6.8)/0.1% SDS/10×Denhardt's solution/salmon sperm DNA (250 μg/ml) at 42° C.; wash, 0.2×SSC/0.1% SDS at 42° C.] of the tick cDNA library. The nucleotide sequence of the probe is as follows:
Filters were exposed for eleven days and six positives were isolated for sequence analysis. Three of the clones (T12, T82 and 132) encode GluCl-related proteins and were sequenced on both strands.
RsGluCl2-Poly (A)+ RNA was isolated from brown dog tick heads. First strand cDNA was synthesized from 50 ng RNA using a SUPERSCRIT preamplification System (Life Technologies). A tenth of the first strand reaction was used for PCR. The degenerate oligos utilized were designed based on sequences obtained from C. elegans, Drosophila, and flea (C. felis) GluCls:
Two PCR rounds, using the combinations “27F2+3AF1, then 27F2+3BF2” were performed. The cycles were as follow: 1× (95° C. for 120 sec.), then 30× (95° C. for 45 sec.; 50° C. for 90 sec.; and 72° C. for 120 sec.), then 1× (72° C. for 120 sec.). Reagents were from Life Technology Inc. The oligonucleotide concentration was 5 μM. One tenth of the PCR reaction products was tested by Southern blot analysis, in order to identify and prevent the PCR-cloning of contaminating sequences. Novel PCR products of the appropriate size were cloned into the PCR2.1 plasmid vector using a “TA” cloning kit Invitrogen, Inc.). Following sequence analysis (ABI Prism, PE Applied Biosystems), selected PCR clone inserts were radiolabelled and used as probes to screen a cDNA library generated into the Uni-ZAP® vector (Stratagene, Inc.) from using the RNA preparation mentioned above. Sequences from full-length cDNA clones were analysed using the GCG Inc. package. Subcloning of RsGluCl2 into a mammalian expression vector was done by excision of an 1.85 kb coding-region-containing fragment (XhoI-EcoRI digest) from the original insert of clone RsGluCl2 B1 from the UniZap® pBS plasmid, followed by ligation into the TetSplice® vector (Life Technologies Inc.). cDNA clones T12 and T82 are identical in the coding region except for a single nucleotide difference resulting in a single amino acid substitution which is probably a naturally occurring polymorphism. The T32 clone has 2 additional exons not present in the T12 and T82 cDNAs, one is near the 5′ end of the coding region (135 bp exon) and the other is in the M3-M4 intracellular linker (96 bp exon). Additionally, these optional exons are not included in DrosGluCl-1 ORF. These cDNA clones are also denoted as RsGluCl-1L (T32-2.48 kb) and RsGluCl-1S (T12 and T82-2.126 kb). The predicted RsGluCl-1S protein is approximately 71% identical to the DrosGluCl1 protein.
Xenopus laevis oocytes were prepared and injected using standard methods previously described [Arena, J P., Liu, K. K., Paress, P. S. & Cully, D. P. Mol. Pharmacol. 40, 368-374 (1991); Arena, J. P., Liu, K. K., Paress, P. S., Schaeffer, J. M. & Cully, D. F., Mol. Brain. Res. 15, 339-348 (1992)]. Adult female Xenopus laevis were anesthetized with 0.17% tricaine methanesulfonate and the ovaries were surgically removed and placed in a solution consisting of (mM): NaCl 825, KCl 2, MgCl2 1, HEPES 5, NaPyruvate 2.5, Penicillin G. 100,000 units/L, Streptomycin Sulfate 1000 mg/L, pH 7.5 (Mod. OR-2). Ovarian lobes were broken open, rinsed several times in Mod. OR-2, and incubated in 0.2% collagenase (Sigma, Type1) in Mod. OR-2 at room temperature with gentle shaking. After 1 hour the collagenase solution was renewed and the oocytes were incubated for an additional 30-90 min until approximately 50% of the oocytes were released from the ovaries. Stage V and VI oocytes were selected and placed in media containing (mM): NaCl 96, KCl 2, MgCl2 1, CaCl2 1.8, HEPES 5, NaPyruvate 2.5, theophylline 0.5, gentamicin 50 mg/ml, pH 7.5 (ND-96) for 16-24 hours before injection. Oocytes were injected with 50 nl of Dv8, Dv9, RsGluCl1 or RsGluCl2 RNA at a concentration of 0.2 mg/ml. Oocytes were incubated at 18° C. for 1-6 days in ND-96 before recording.
Recordings were made at room temperature in modified ND-96 consisting of (mM: NaCl 96, MgCl2 1, CaCl2 0.1, BaCl2 3.5, HEPES 5, pH 7.5. Oocytes were voltage clamped using a Dagan CA1 two microelectrode amplifier (Dagan Corporation, Minneapolis, Minn.) interfaced to a Macintosh 7100/80 computer. The current passing electrode was filled with 0.7 μM KCl, 1.7 M KCitrate, and the voltage recording electrode was filled with 1 M KCl. Throughout the experiment oocytes were superfused with modified ND-96 (control solution) or with ND-96 containing potential channel activators and blockers at a rate of approximately 3 ml/min. Data were acquired at 100 Hz and filtered at 33.3 Hz using Pulse software from HEKA Elektronik (Lambrecht, Germany). All recordings were performed from a holding potential of either 0 or −30 mV.
cRNA was synthesized from the RsGluCl 1S clone T12 and expressed in Xenopus oocytes. The channel encoded by RsGluCl-1 is a glutamate-gated chloride channel activated by IVM-PO4.
A RsGluCl may be subcloned into a mammalian expression vector and used to transfect the mammalian cell line of choice. Stable cell clones are selected by growth in the presence of G418. Single G418 resistant clones are isolated and tested to confirm the presence of an intact RsGluCl gene. Clones containing the RsGluCls are then analyzed for expression using immunological techniques, such as immunoprecipitation, Western blot, and immunofluorescence using antibodies specific to the RsGluCl proteins, Antibody is obtained from rabbits innoculated with peptides that are synthesized from the amino acid sequence predicted from the RsGluCl sequences. Expression is also analyzed using patch clamp electrophysiological techniques and an anion flux assay.
Cells that are expressing RsGluCl stably or transiently, are used to test for expression of active channel proteins. These cells are used to identify and examine other compounds for their ability to modulate, inhibit or activate the respective channel.
Cassettes containing the RsGluCl cDNA in the positive orientation with respect to the promoter are ligated into appropriate restriction sites 3′ of the promoter and identified by restriction site mapping and/or sequencing. These cDNA expression vectors may be introduced into fibroblastic host cells, for example, COS-7 (ATCC# CRL1651), and CV-1 tat [Sackevitz et al., 1987, Science 238: 1575], 293, L (ATCC# CRL6362) by standard methods including but not limited to electroporation, or chemical procedures (cationic liposomes, DEAE dextran, calcium phosphate). Transfected cells and cell culture supernatants can be harvested and analyzed for RsGluCl expression as described herein.
All of the vectors used for mammalian transient expression can be used to establish stable cell lines expressing RsGluCl. Unaltered RsGluCl cDNA constructs cloned into expression vectors are expected to program host cells to make RsGluCl protein. In addition, RsGluCl is expressed extracellularly as a secreted protein by ligating RsGluCl cDNA constructs to DNA encoding the signal sequence of a secreted protein. The transfection host cells include, but are not limited to, CV-1-P [Sackevitz et al., 1987, Science 238: 1575], tk-L [Wigler, et al., 1977, Cell 11: 223], NS/0, and dHFr-CHO [Kaufman and Sharp, 1982, J. Mol. Biol. 159: 601].
Co-transfection of any vector containing a RsGluCl cDNA with a drug selection plasmid including, but not limited to G418, aminoglycoside phosphotransferase; hygromycin, hygromycin-B phosphotransferase; APRT, xanthine-guanine phosphoribosyl-transferase, will allow for the selection of stably transfected clones. Levels of RsGluCl are quantitated by the assays described herein. RsGluCl cDNA constructs way also be ligated into vectors containing amplifiable drug-resistance markers for the production of mammalian cell clones synthesizing the highest possible levels of RsGluCl. Following introduction of these constructs into cells, clones containing the plasmid are selected with the appropriate agent, and isolation of an over-expressing clone with a high copy number of plasmids is accomplished by selection with increasing doses of the agent. The expression of recombinant RsGluCl is achieved by transfection of full-length RsGluCl cDNA into a mammalian host cell.
Baculovirus vectors, which are derived from the genome of the AcNPV virus, are designed to provide high level expression of cDNA in the Sf9 line of insect cells (ATCC CRL# 1711). A recombinant baculoviruse expressing RsGluCl cDNA is produced by the following standard methods (In Vitrogen Maxbac Manual): The RsGluCl cDNA constructs are ligated into the polyhedrin gene in a variety of baculovirus transfer vectors, including the pAC360 and the BlueBac vector (InVitrogen). Recombinant baculoviruses are generated by homologous recombination following co-transfection of the baculovirus transfer vector and linearized AcNPV genomic DNA [Kitts, 1990, Nuc. Acid. Res. 18: 5667] into Sf9-cells. Recombinant pAC360 viruses are identified by the absence of inclusion bodies in infected cells and recombinant pBlueBac viruses are identified on the basis of b-galactosidase expression (Summers, M. D. and Smith, G. E., Texas Agriculture Exp. Station Bulletin No. 1555). Following plaque purification, RsGluCl expression is measured by the assays described herein.
The cDNA encoding the entire open reading frame for RsGluCl GluCl is inserted into the BamHI site of pBlueBacII. Constructs in the positive orientation are identified by sequence analysis and used to transfect Sf9 cells in the presence of linear AcNPV mild type DNA.
Recombinant RsGluCl is produced in the yeast S. cerevisiae following the insertion of the optimal RsGluCl cDNA cistron into expression vectors designed to direct the intracellular or extracellular expression of heterologous proteins. In the case of intracellular expression, vectors such as EmBLyex4 or the like are ligated to the RsGluCl cistron [Rinas, et al., 1990, Biotechnology 8: 543-545; Horowitz B. et al., 1989, J. Biol. Chem. 265: 41894192]. For extracellular expression, the RsGluCl GluCl cistron is ligated into yeast expression vectors which fuse a secretion signal (a yeast or mammalian peptide) to the NH2 terminus of the RsGluCl protein [Jacobson, 1989, Gene 85: 511-516; Riett and Bellon, 1989, Biochem. 28: 2941-2949].
These vectors include, but are not limited to pAVE1-6, which fuses the human serum albumin signal to the expressed cDNA [Steep, 1990, Biotechnology 8: 4246], and the vector pL8PL which fuses the human lysozyme signal to the expressed cDNA [Yamamoto, Biochem. 28: 2728-2732)]. In addition, RsGluCl is expressed in yeast as a fusion protein conjugated to ubiquitin utilizing the vector pVEP [Ecker, 1989, J. Biol. ChenL 264: 7715-7719, Sabin, 1989 Biotechnology 7: 705-709, McDonnell, 1989, Mol. Cell. Biol. 9: 5517-5523 (1989)]. The levels of expressed RsGluCl are determined by the assays described herein.
Recombinantly produced RsGluCl may be purified by antibody affinity chromatography. RsGluCl GluCl antibody affinity columns are made by adding the anti-RsGluCl GluCl antibodies to Affigel-10 (Biorad), a gel support which is pre-activated with N-hydroxysuccinimide esters such that the antibodies form covalent linkages with the agarose gel bead support. The antibodies are then coupled to the gel via amide bonds with the spacer arm. The remaining activated esters are then quenched with 1M ethanolamine HCl (pH 8). The column is washed with water followed by 0.23 M glycine HCl (pH 2.6) to remove any non-conjugated antibody or extraneous protein. The column is then equilibrated in phosphate buffered saline (pH 7.3) together with appropriate membrane solubilizing agents such as detergents and the cell culture supernatants or cell extracts containing solubilized RsGluCl are slowly passed through the column. The column is then washed with phosphate-buffered saline together with detergents until the optical density (A280) falls to background, then the protein is eluted with 0.23 M glycine-HCl (pH 2.6) together with detergents. The purified RsGluCl protein is then dialyzed against phosphate buffered saline.
The present application is a divisional application of U.S. application Ser. No. 10/239,588, allowed, which is the §371 National Stage prosecution of PCT International Application Serial No. PCT/US01/09905, having an international filing date of Mar. 28, 2001, which claims priority under 35 U.S.C. § 119(e), to provisional application U.S. Ser. No. 60/193,934, filed Mar. 31, 2000, now expired.
| Number | Date | Country | |
|---|---|---|---|
| 60193934 | Mar 2000 | US |
| Number | Date | Country | |
|---|---|---|---|
| Parent | 10239588 | Sep 2002 | US |
| Child | 11620390 | US |
