Patent Application
20060086613
1. Field of the Invention
The present invention relates to an electrophoresis apparatus which separates and analyzes samples such as DNA and protein by making use of a plurality of capillaries and a sample plate assembly used therefor.
2. Conventional Art
An application technology in which an array is constituted by combining a plurality of capillaries, an electrophoresis medium and a sample to be separated or analyzed are supplied to the respective capillaries and moved therethrough to thereby separate and analyze the object sample is well known, wherein a sample such as DNA and protein marked by a fluorescent material is supplied to the capillaries. Such application technology is, for example, disclosed in U.S. Pat. Nos. 5,366,608, 5,529,679, 5,516,409, 5,730,850, 5,790,727, 5,582,705, 5,439,578 and 5,274,240. In view of a through-put of the separation and analysis, it is much more advantageous to use electrophoresis with multi capillaries rather than electrophoresis with a flat plate gel.
A capillary array electrophoresis apparatus is basically constituted by such as a capillary array, an excitation light system including a laser beam source, a light receiving optical system which detects fluorescence and a voltage application unit which causes electrophoresis. In such capillary array electrophoresis apparatus the capillary array is constituted by aligning a plurality of capillaries in a plane shape, and a laser beam is irradiated to the capillaries which are filled with a sample (fluorescent sample) marked by a fluorescent material in parallel direction with the capillary aligning direction, then, through the lens action of the capillaries the laser beam is condensed and the laser beam is irradiated to the fluorescent sample in all of the capillaries when the laser beam is irradiated, the fluorescent sample emits fluorescence. Through detection by the light receiving optical system of the fluorescence emitted from the fluorescent sample in a direction substantially perpendicular to the laser beam irradiation direction, the measurement of the sample is performed.
In order to automatically supply at least a sample to capillaries in a multi capillary array, a sampling device is used. An object of the present invention is to provide an electrophoresis apparatus which can perform separation and analysis of samples by supplying many samples continuously to the capillaries and a sample plate assembly used for the apparatus.
In an electrophoresis apparatus in which a sample marked by fluorescent material is separated in capillaries through electrophoresis by making use of capillary array formed by a plurality of capillaries, fluorescence emission is caused by irradiation light to the sample and through detection of the fluorescence the sample is analyzed, the present invention provides an electrophoresis apparatus which comprises a sample plate assembly including two sets of a tray at a sample supply portion of the capillary array, an adapter for the tray, a sample plate mounted on the adapter, a septer mounted on the sample plate and a septer cover mounted on the septer, wherein two sample plates include respectively different number of wells, and the tray, the adapter, the septer and the septer holder in each set being adapted to the corresponding different sample plate. Further, the tray includes a sensor for discriminating the adapter, and thereby the sample plate assembly is correctly placed on the tray. Still further, the tray is designed to permit mounting a plurality of units thereon according to the sample plate assembly being mounted thereon and the respective trays are provided with a sensor which permits to judge whether the unit is correctly mounted.
Further, the present invention provides a sample plate assembly including two sets of a tray at a sample supply portion of the capillary array, an adapter for the tray, a sample plate mounted on the adapter, a septer mounted on the sample plate and a septer cover mounted on the septer, wherein two sample plates include respectively different number of wells, and the tray, the adapter, the septer and the septer holder in each set being adapted to the corresponding different sample plate.
An electrophoresis apparatus according to the present invention will be explained with reference to
As shown in
A gel supply side 305 of the capillary array 301 is connected to a gel pump system 304 and the gel is supplied from a reservoir 312 by a syringe 310. Another electrode 307 is attached to the reservoir 312. A detection portion 308 of fluorescence generated from a sample marked by fluorescent material which is separated by electrophoresis in the capillaries is disposed outside the space in the thermostatic oven 311.
An entire operation of an electrophoresis apparatus using a capillary array according to the present invention will be explained with reference to
In
As shown in
Now, the operation of the capillary array electrophoresis apparatus will be explained. As shown in
In
Now, the operation sequence of the capillary array electrophoresis apparatus will be explained. The buffer liquid 436 contained in the buffer liquid container 417 is injected into the capillaries from the buffer liquid injection port 430. Then, the conductive fluorescent sample injection port 432 is immersed into the fluorescent sample container 418 filled with the fluorescent sample 434 to inject the fluorescent sample 434 into the capillaries. Thereafter, the conductive fluorescent sample injection port 432 is immersed into another buffer liquid container (not shown) containing a buffer liquid and a high voltage is applied between the buffer liquid injection port 430 and the fluorescent sample injection port 432 from the high voltage power source 419 to cause electrophoresis in the capillaries. Since the moving speed in the electrophoresis is proportional to the magnitude of electric charge of the molecules and is antiproportional to the size of the molecules, the fluorescent sample 434 is separated. Through the continuous application of the high voltage for a long time the electrophoresis is caused for a long time and the fluorescence 435 emitted during the electrophoresis is continuously measured.
The sample introduction portion 432 is structured by inserting capillaries into stainless tubes. Respective stainless tubes are soldered to an electrode plate with a protective cover and through application of a voltage to the connecting portion 431, the voltage is applied all of the stainless tubes. As has been explained, since the capillary array itself is provided with all necessary functions including the buffer liquid injection port 430 attached to the buffer liquid container 417, a light detection portion 429 in which laser beam is irradiated and the fluorescence is detected and the sample introduction portion 432 through which the fluorescent sample 434 is introduced and a voltage necessary for electrophoresis is applied thereto, when an exchange of the capillary array is required, the capillary array can be exchanged with a very easy handling.
Further, the top of the fluorescent sample injection port 432 is sealed by an adhesive so as to prevent carry over of such as the sample. A kind of the adhesive used is an epoxy series adhesive and the same is fully cured so as not to affect the electrophoresis. Gaps between capillaries and insertion portions therefor in the sample introduction portion 432 and between the fluorescent sample injection port 432 and the protective covers are sealed with an adhesive. Thereby, a possible electric insulation reduction is prevented which can be caused when water contained in the sample and the buffer liquid penetrates into the covers of the stainless tubes.
When once detaching the capillary array from the apparatus and storing the same after measurement of the sample, a dry preventive container cover (not shown) is attached so as not to dry the buffer liquid 436. The container cover is a dry preventive cover for the sample introduction portion 432. The container cover is attached to the sample introduction portion 432 while charging pure water therein. The container cover is provided with an O ring to thereby prevent a possible drying. It is also effective to provide a dry protective cap (not shown) for the buffer liquid injection port 430. In such instance the cap is set onto the buffer liquid injection port 430 under the condition in which a small amount of pure water is likely filled therein. When the inner diameter of the cap is determined to be smaller than outer diameter of the buffer liquid injection port 430 by about 5-15% to thereby prevent a possible drying. As a material of the cap, silicon rubber is preferable, because the silicon rubber causes no adverse effect to the buffer liquid and the electrophoresis. These cover and cap also work to protect the top end thereof and to prevent contamination thereof, when shipping the capillary array to a customer.
Each of the capillaries used in the capillary array as explained above is a fused quartz tube having inner diameter of 50±10 μm and outer diameter of 340±20 μm. Since the fused quartz tube itself breaks very easily, a polyimide coating having thickness of 15±5 μm is applied on the surface of the capillary. In view of limiting amount of fluorescent sample 434 it is desirable to reduce the inner diameter of the capillary, however, on the other hand in view of a concave lens effect due to refractive index difference between the fluorescent sample 434 and fused quartz, the capillary having a too small inner diameter makes the measurement difficult. therefore, the inner diameter of 50-100 μm is preferable for the fused quartz tube. Further, in order to suppress the above refractive index difference it is preferable that the outer diameter of the fused quartz tube is small, however, a too small outer diameter makes assembly thereof difficult because of static electrically, therefore, the outer diameter of 250-350 μm is preferable for the fused quartz tube. The coating material for the capillary is not limited to the polyimide, a material having an equivalent electrical insulation and other properties as those of polyimide can be used.
A sample plate assembly used for the auto sampler according to the present invention is formed into a four layer structure by laminating a plate adapter, a plate, a septer and a septer holder. The above unit is mounted on a tray of the electrophoresis apparatus according to the present invention. In order to reduce load for a person performing analysis, the analysis is performed by charging a sample to be analyzed into a marketed micro tighter plate which is marketed from many manufacturers. These micro tighter plates respectively include the corresponding adapters and any type of micro tighter plates can be attached to an auto sampler. These micro tighter plates can be classified into two kinds depending on the number of samples which can be charged into one plate.
One of the micro tighter plates includes wells of 8×12=96 holes for introducing and holding samples into the plate and another micro tighter plates includes wells of 16×24=384 holes. Sample plates referred to hereinbelow indicate these plates and the former sample plate will be referred to as a 96 sample plate and the later as a 384 sample plate. Since in the electrophoresis apparatus according to the present invention two sets of the above sample plates can be mounted at the same time, a continuous analysis of 384×2=768 samples in maximum can be performed.
The septer 3 has a function of preventing evaporation of the samples and further serves to function of wiping off such as sample deposited at the top end of the capillaries. In the electrophoresis apparatus according to the present invention, a number of analyses per day for a standard sequence analysis is set to be 96 samples, therefore, with the present apparatus which permits mounting of two 96 hole sample plates at the same time, an automatic operation with no person can be performed in two days. Therefore, the evaporation of such as the sample and buffer solution is an important problem. Through fitting the septer 3 onto the sample plate 2 the evaporation of such as samples is prevented.
Further, the top end portion of the capillary array performing electrophoresis is immersed during the sample analysis into the sample, buffer liquid and water depending on purposes of analysis. The gel causing the sample in the capillaries electrophoresis is exchanged for every electrophoresis, therefore, in such instance the top ends of the capillaries are immersed in a waste liquid vessel (water) in order to receive the exhaust gel from the top ends of the capillaries. Thereafter, in order to introduce the sample into the capillaries, the end terminals thereof together with the electrode provided at the top end of the capillary array are inserted into the sample, and a high voltage is applied to the electrode and the sample is introduced into the respective capillaries. Further, when performing electrophoresis, the top ends of the capillary array is immersed into the buffer vessel so as to prevent electrical discharge during the high voltage application as well as to cause the sample electrophoresis.
When the sample plate assembly moves between the waste liquid vessel, the sample and the buffer vessel, the top ends of capillaries are immersed once or a plurality of times in a cleaning vessel (water)for cleaning so as to prevent mixing of such as sample and buffer liquid deposited at the top ends of the capillaries into other solution. The septer 3 is made of silicon rubber and is provided with projections so that the top ends thereof are inserted into respective wells in the sample plate 2, and cuttings are provided at the top ends thereof so as to permit passing of the capillary top ends therethrough. When the auto sampler moves, the capillaries once and always lower to a height so as not to touch to the auto sampler, therefore, every time when the capillaries lower, water, sample and buffer liquid deposited at the top ends of the capillaries are wiped off by these cuttings, thereby, mixture of these to other solution is suppressed in minimum.
The septer holder 1 is a holder for securing the well plate and septer to the adapter.
Now, the structure of the septer holder positioning guide) will be explained.
In order to reduce time for a person performing analysis, the septer holder 1 is configured in a simple structure, in that the septer holder 1 can be secured to the adapter 4 only by fitting to two sets of pawls 10 provided at respective right and left sides to the flanges 9 of the adapter 4. Therefore, it is possible that the septer holder 1 can be fitted to the plate adapter 4, while being offset in longitudinal direction. If the septer holder 1 is erroneously secured to the plate adapter 4, the holes in the septer holder 1 through which capillaries pass do not align the wells in the sample plate 2 which breaks the capillaries. In order to prevent such possibility, there are provided projections 6 at the portions where the four pawls 10 are formed at the side of the septer holder 1 and if the projections 6 do not match with guides 7 at the side of the plate adapter 4, the pawls 10 can not fit to the flange 9 and the septer holder 1 can not be attached to the plate adapter 4. With this measure, a person performing analysis can attach the septer holder 1 to the plate adapter 4 without special attention, and further an attachment to an erroneous position never occurs.
The auto sampler according to the present invention can be adapted to different plates (having different height) by making use of the adapter. Among the sample plates used in the electrophoresis apparatus according to the present invention, even with sample plates having the same 96 wells a plurality of types are marketed, and such as the shape, size and well depth thereof are different depending on the manufacturers.
For example, when the minimum sample amount for the electrophoresis apparatus according to the present invention is set at 10 μl, the height from the bottom of the well to the sample liquid surface for one of marketed 96 sample plates is about 2.5 mm, therefore, in order to surely introduce the sample into the capillary the capillary has to be inserted to the height of about 1 mm from the bottom of the well. However, the height of the well bottom greatly varies depending on the sample plates marketed, therefore, if the these sample plates are used without careful discrimination, there arises a problem that the top end of the capillary may touch to the bottom of the well to break the capillaries or may not reach to the sample to thereby fail the introduction of the sample into the capillary.
Therefore, in order to correct such-as the bottom height and the position of center axis of the well in the sample plates of respective manufacturers, plate adapters corresponding to respective sample plates are prepared and are used in combination with the respective sample plates, therefore, the center axis and the bottom height of the well for any sample plates having 96 wells are set equal with respect to tray 5 in the auto sampler. Thus, it is sufficient if the auto sampler only discriminates number of wells in that 96 or 384, of the sample plate assembly mounted thereon and determines control method depending on the discrimination, the auto sampler can always be moved for any type of 96 sample plates mounted under the same control method.
Further, it is difficult to separate at a glance the 96 well sample plates of respective manufacturers depending on the configurations thereof, therefore, in order not to be attached to a wrong plate adapter or in a wrong direction, a measure is taken for the respective plate adapters. For example, in the case of the sample plate 3 as shown in
The auto sampler according to the present invention can be adapted to 96/384 well sample plates with an identical structure. Any two sets of the plate adapters for 96 well sample plate and the plate adapters for 384 well sample plate can be attached to the tray 5 as shown in
The electrophoresis apparatus according to the present invention can automatically discriminate the 96 plate and the 384 plate. As illustrated in
The positional relationship between the light shielding plate 8 and the first cut-out 11 is inverted with respect to the plate adapter for 96 well sample plate and the plate adapter for 384 well sample plate, therefore, when the plate adapter 4 is attached to the tray 5 and signals from the two photo diodes 13 are compared, it is possible to discriminate whether the attached plate adapter is for the 96 well sample plate or for the 384 well sample plate. Further, with a second cut-out 12 as shown in
The auto sampler according to the present invention is provided with a stopper plate having a structure including an electrical discharge preventing measure.
For preventing the above, in the present apparatus a stopper plate 14 as shown in
Now, when the capillary array is inserted into such as the sample plate and the buffer vessel, the stopper plate 14 is shifted upward due to the upward movement of the auto sampler, therefore, the stopper plate 14 pushes down the sample plate assembly and the buffer vessel by a larger spring force than the friction force. Thereby, when the auto sampler starts the downward movement, the stopper plate 14 always pushes down the sample plate assembly and the buffer vessel, there are no chances that such as the septer remains at the capillary array.
Further, the bottom face of the stopper plate 14, namely the face which contacts to such as sample plate assembly and the buffer vessel is structured not to be flat but uneven as shown in a cross section in
The auto sampler for the electrophoresis according to the present invention does not drop even when the power source is turned off, but can be pushed down manually. During analysis of a sample when the gel in the capillaries is dried, the introduction of the sample and the electrophoresis are disturbed. However, the top end portion of the capillary array which is subjected to the fear of drying is immersed in a liquid such as the sample and the buffer liquid substantially all the time during the analysis, although during the movement of the auto sampler between wells the top ends of the capillaries are exposed to the outer atmosphere, the exposed time is very short such as a few seconds, the gel in the capillaries does not generally dry during an analysis. Further, after completing an analysis or when interrupting analysis because of error detection, the top ends of the capillaries wait while being immersed in the buffer liquid, therefore, the gel at the top ends of the capillaries never dries before the subsequent analysis.
For the drive of the auto sampler, a drive scheme in combination of a stepping motor and a ball screw is basically employed, and during the time when the power source is made for the apparatus the stepping motor is always placed under an excitation condition, therefore, after completing an analysis, a condition that the capillaries are inserted into the buffer vessel, in other words the condition in which the auto sampler is shifted upward, can be maintained. However, sometimes it is desired to break the power source of the apparatus, because it is presumed to be long to the subsequent analysis or a person performing the analysis wants to interrupt the power source of the apparatus during an analysis for some reason, it is necessary that the auto sampler holds the position (the height in Z direction) before the power source is interrupted even under a condition where the power source of the apparatus is not made, in other words under the condition that the stepping motor is not excited.
On the other hand, when it is desired to remove the capillaries from the apparatus after the power source is interrupted, it is difficult to remove the capillaries if the capillaries are kept at the position where the capillaries are immersed in the buffer liquid, the auto sampler has to be pushed down manually to the height which permits the removal of the capillary array. Further, when the auto sampler can not operate normally because of occurrence of an abnormality, it is conceived necessary that the auto sampler is moved manually after interrupting the power source of the apparatus. For this reason, after the power source of the apparatus is interrupted, namely even under the condition that the stepping motor is not excited, the auto sampler always has to be kept at a predetermined position and if required the auto sampler can be moved manually by a person himself performing the analysis or by a person himself performing maintenance and inspection.
Fa=W×sin(arctan(PB/DB×π))[N] (1)
and the total friction force F[N] acting to the table can be expressed as follows;
F=−μ0×W×cos(arctan(PB/DB×π))[N] (2)
Accordingly, a condition where the table 20 and the work never drop downward even when the stepping motor is in a non-excited condition is as follows;
|Fa|<|F| (3)
Now, as an inherent force which works so as not to drop the table, there is, for example, a detent torque (static torque at the time of no excitation) of the stepping motor, however, such torque is very small with respect to the forces now concerned and no substantial contribution to the above inequation (3) is considered, therefore, the inclusion thereof is omitted. In the present auto sampler, since |Fa|≈11.4[N], the above inequation is satisfied, therefore, the auto sampler never drops even under the condition that the stepping motor is placed under no excitation condition. Further, if the auto sampler is pushed downward with a force more than |F|−|Fa|≈7[N], the auto sampler can be easily pushed down. The relationship with regard to magnitudes of the forces expressed by the equations (1) and (2) can be determined by the pitch PB of the ball screw and the shaft diameter DB of the ball screw. The shaft diameter DB of the ball screw is determined in advance in view of the structure of the auto sampler and the required mechanical strength thereof so that alternation thereof is difficult, however, the pitch PB of the ball screw can be selected with comparatively a large tolerance if such as drive speed of the auto sampler and the operating condition of the stepping motor are properly adjusted, therefore, the inequation (3) can be realized easily.
The auto sampler according to the present invention makes use of a position guide (reference surface) at the time of assembly. When 384 well sample plate is used, the diameter of capillary insertion port in the sample plate assembly minimizes and the inner diameter of the septer holder in this instance is 2.3 mm. Since the outer diameter of the capillary including the electrode thereof is 0.71 mm, in order that a single capillary can be inserted into a well without touching the inner wall of the septer holder, the distance between the center axis of the capillary and the center axis of the well in the X Y plane is required to be less than about 0.8 mm.
Further, in the present apparatus which can perform a continuous measurement to the maximum of 786 samples, the auto sampler moves to sample positions in the maximum of 48 points, therefore, if the orthogonality of X and Y axes of the auto sampler offsets, there arises a problem that even when the capillaries can be inserted into the wells without troubles at a certain sample position, the capillaries touch to the septer holder at another sample position.
In view of the above problem, a high orthogonality with regard to X, Y and Z axes is required at the time of assembly of the auto sampler, therefore, in order to reduce time for the assembly as much as possible, all of the parts relating to the orthogonality with regard to X, Y and Z axes are provided with reference planes. Therefore, it is simply enough to assemble the same while matching the respective reference planes each other. Thereby, the time required for the assembly and adjustment thereafter is greatly reduced, and further, such as parts exchange during maintenance can be performed easily.
In the electrophoresis apparatus according to the present invention positioning pins are provided for the auto sampler and the oven unit, a system is constituted which automatically reproduces their relative positions during the exchange of the unit.
The orthogonality of the auto sampler with regard to X, Y and Z axes has already been explained, the positional accuracy required for the present apparatus is further complex which uses a capillary array constituted by 16 pieces of capillaries. The capillaries are aligned in a grid shape of 2×8 at the sample introduction portion of the capillary array, therefore, even if the orthogonality of the auto sampler with regard to X, Y and Z axes is highly accurate, if the grid axes of the capillaries aligned in a grid shape are not in parallel with the X, Y and Z axes, it is not certain that all of the 16 pieces of capillaries can be inserted into the corresponding wells without trouble.
Although the sample introduction side of the capillary array is attached to the oven unit, if the capillary array is always correctly attached to the oven unit, the positional relationship between the capillary array and the auto sampler is determined by the positional relationship between the oven unit and the auto sampler. The positional relationship between the oven unit and the auto sampler can be satisfactorily performed by adjusting the respective relative positional relationship during assembling the both into the box body of the apparatus, however, only with such adjustment, once one of the units is detached from the box body of the apparatus for such as repairment and inspection, the prior positional relationship of the both is destroyed and in order to reproduce the original positional relationship another readjustment is necessitated.
Therefore, two pieces of positioning pins for respective units are provided at the box body of the apparatus, and for the both units corresponding guides which permit insertion of the respective positioning pins are provided. The positional relationship of these positioning pins is adjusted in advance in the box body of the apparatus and once such adjustment is performed, no readjustment thereof is required. Thus, even when one of the both units or the both units are detached from the box body of the apparatus, when attaching the same subsequently, if the units are attached along the positioning pins provided at the box body of the apparatus, the positional relationship of the both units can be reproduced without adjustment.
Now, a structure/jig (target, ruler, etc) of a calibration use device in the electrophoresis apparatus according to the present invention will be explained.
The auto sampler control unit which performs control for the auto sampler stores positional information (in X, Y and Z coordinate system) common between devices for moving the auto sampler and inserting the capillaries into such as the sampler plate and the buffer vessel. However, in an actual apparatus, the relative distance between the auto sampler and the capillary array finely varies device by device, therefore, the control unit performs correcting calculation of the positional information based on calibration value (offset value) stored for every device, and thereafter drives the auto sampler by making use of the coordinate system after the correction. The present apparatus is provided with a calibration function which determines the above calibration value, and the calibration value is stored for every apparatus in a built-in control PC for the apparatus while permitting rewriting thereof.
In the calibration of the auto sampler, a target 21 in a frust conical shape provided on the tray 5 in the auto sampler is determined as a reference position in X Y direction and a line 22 indicating the liquid surface in the buffer vessel to be attached to the tray 5 is determined as a reference position in Z direction, the auto sampler is moved to a position where the top ends of the capillaries coincide with these positions and the X, Y and Z coordinates of the auto sampler at this moment are stored as the calibration values. The coordinates of these reference positions are in advance stored in the auto sampler control unit and the positional coordinates of such as respective wells in the sample plate and the buffer vessel likely stored are determined based on the reference coordinates. Accordingly, through determination of difference between the calibration values determined by the calibration of the auto sampler and the coordinates of the reference positions for the calibration which are stored in advance in the control unit, the coordinates such as respective wells in the sample plate can be corrected.
Hereinbelow, the above calibration function will be explained in detail.
Further, for the calibration in Z direction, the target line 22 (a line indicating amount of buffer liquid) printed on the buffer vessel as illustrated in
When the calibration of the auto sampler is performed in the manner as explained and the direction of the capillary array and the auto sampler is correctly adjusted, the capillary array correctly moves to all of the positions on the tray in the auto sampler. However, such is based on a precondition that 16 pieces of capillaries in the capillary array are correctly aligned in 2×8 matrix. Namely, the calibration of the auto sampler is performed by selecting one capillary among 16 pieces of capillaries as a representative, the remaining 15 pieces of capillaries have to be correctly aligned with respect to the one representative capillaries. However, it is possible that a person performing an analysis can by mistake bend a capillary during handling the capillary array, in such instance, it is indefinite whether all of the 16 pieces of the capillaries can be normally inserted into the corresponding wells in the sampler plate.
Therefore, another function for checking whether the capillary which was bent by mistake by the person performing the analysis can be used as it is and whether the manually straightened capillary by the person can be used is necessitated. For this purpose, the present apparatus is further provided with an array checking function which performs the above checking. When performing the array checking function, a capillary array of which alignment is required to be checked is attached to the apparatus and after performing calibration of the auto sampler depending on necessity, the array target 23 for checking the alignment is attached on the buffer vessel as illustrated in
A column 24 serves to lift the stopper plate (as shown in
According to the present invention, many number of samples can be automatically supplied to the capillaries.
| Number | Date | Country | Kind |
|---|---|---|---|
| 2000-147496 | May 2000 | JP | national |
| Number | Date | Country | |
|---|---|---|---|
| Parent | 09842685 | Apr 2001 | US |
| Child | 11302125 | Dec 2005 | US |
