Patent Application
20070205105
(a) Field of the Invention
The present invention relates to an electrophoresis apparatus used for analyzing polymers, such as DNA, RNA and proteins, particularly, an electrophoresis member used in DNA sequencers, and to its production.
(b) Description of the Related Art
According to one technique of DNA sequencing, a liquid containing DNA fragments is separated by electrophoresis to detect the fluorescence of each DNA fragment. A conventional method is a slab gel electrophoresis method wherein electrophoresis is conducted in a gel filled between glass plates. Decreased gel thickness and higher voltage are necessary to speed up the electrophoresis separation, but generation of heat has limited the applicable voltage.
A new technique is a capillary electrophoresis method using quartz capillaries of about 10 to 100 μm in inside diameter. Because capillaries decrease the generation of heat, higher voltage can be applied as compared with the slab gel electrophoresis method, increasing the separation speed more than 10 times. At present full automatic multi-capillary system using a capillary array of from several to 100-capillaries-alignment is employed actively.
The multi-capillary array system needs special designs to irradiate a plurality of capillaries with light for exciting fluorescence. There have been developed various systems including beam scanning system, beam spreading system and multi-light source system, which however involve the problems of low irradiation efficiency, low analyzing sensitivity and high cost for a plurality of light sources. A solution disclosed in Japanese Patent Application Non-examined Publication No. H09-96623 (1997) is irradiating light perpendicularly to the capillaries, on a plane wherein a plurality of capillaries are aligned, to irradiate all capillaries with one beam using the lens effects of the capillaries. This system, called multiple focusing system, enables highly sensitive analysis with only one light source.
Another method recently attracting attentions is the chip capillary electrophoresis method disclosed in the specification of U.S. Pat. No. 5,958,694, whereby electrophoresis is conducted through channels (capillaries) of about 10 μm wide and deep made on a surface of a glass or quartz plate by etching or the like. The substrate used is sometimes called an electrophoresis chip. Compared with the conventional capillaries, the electrophoresis chip has the advantage of higher heat releasing effect, enabling production of short, high-density channel arrays. The method, however, is not suit to rapid analysis of a large quantity of sample, because the sample has to be transferred from reaction tubes to the chip by hand labor (pipetting).
Conventionally, capillary arrays have been assembled by bundling capillaries using one assembling jig for every capillary. As the number of capillaries increases, the bundle of capillaries becomes bulky, requiring a large space in an apparatus and making downsizing the apparatus difficult. Further, not only the steps and time of capillary array assembling but also troubles such as the breakage of capillaries are increased. Additionally, in the assembled arrays, most parts of the capillaries are exposed in the air, so that they are easily broken on handling and cannot release heat efficiently due to the air surrounding them. In Japanese Patent Application Unexamined Publication Nos. 2001-264293 and 2001-324475 is disclosed a capillary array wherein the sample injection parts and detection parts of a plurality of capillaries are aligned in parallel by penetrating the capillaries through a box-like load header near the sample injection parts and penetrating the detection parts between two support plates. The most parts of the capillaries of the array are also exposed in the air. Therefore, the capillaries are easily broken on handing and cannot release heat efficiently.
An object of the present invention is to provide an electrophoresis member that has an accurate, compact capillary array, is easy to handle and has high heat releasability. Another object of the invention is to provide an efficient method of producing the electrophoresis member.
In one aspect of the invention, there is provided an electrophoresis member, comprising a plurality of capillaries and a first supporter comprising a first support layer, a first adhesive layer and a second support layer, wherein:
In a further aspect of the invention, the capillaries are glass capillaries.
In a still further aspect of the invention, the first supporter has a second adhesive layer interposed between the capillary layer and the second support layer.
In a still further aspect of the invention, each capillary, except the window portion or a part of the window portion including the detection part, has a coating layer as an outermost layer.
In a still further aspect of the invention, the capillaries, at the sample injection portion, are arranged at equal intervals given by dividing 9 mm by an integer.
In a still further aspect of the invention, the capillaries, in the window portion, are supported before and behind the detection parts by a second supporter.
In a still further aspect of the invention, the first supporter has an opening including the window portion.
In a still further aspect of the invention, there is provided a method of producing an electrophoresis member, comprising steps (1), (2) and (3):
(1) a step of forming a capillary layer comprising a plurality of capillaries on an adhesive layer born on a first support layer, by laying the capillaries on the adhesive layer by using a numerically controlled laying apparatus, so that
(2) a step of laminating a second support layer on the capillary layer; and
(3) a step of exposing the capillaries, at each of the window portion and the sample injection portion, by partially removing the first support layer, the first adhesive layer and the second support layer.
In a still further aspect of the invention, the second support layer used in the above-mentioned method bears on one surface a second adhesive layer, and is laminated on the capillary layer, so that the second adhesive layer contacts the capillary layer, and, in step (3), the capillaries, at each of the window portion and the sample injection portion, are exposed by partially removing the first support layer, the first adhesive layer, the second adhesive layer and the second support layer.
In a still further aspect of the invention, the capillaries used in the above-mentioned method are glass capillaries.
In a still further aspect of the invention, each capillary used in the above-mentioned method is a glass capillary having a coating layer as an outermost layer, and the method further comprises a step of peeling off the coating layer at the window portion or at a part of the window portion including the detection parts.
In a still further aspect of the invention, the capillaries are applied with a load while being laid on the first adhesive layer.
In a still further aspect of the invention, the first adhesive layer and/or the capillaries are applied with energy convertible into heat while being laid on the first adhesive layer.
In a still further aspect of the invention, there is provided a capillary electrophoresis apparatus, comprising the electrophoresis member of the invention and a means for reflecting a laser ray in the opening to irradiate the laser ray to the detection parts of the capillaries through a plane parallel to the plane wherein the axes of the capillaries lie in parallel.
The electrophoresis member of the invention comprises a plurality of capillaries and a first supporter comprising a first support layer, a first adhesive layer and a second support layer. The first adhesive layer is positioned on the first support layer, and the capillaries lie on the first adhesive layer to form a capillary layer. The second support layer is positioned on the capillary layer. As shown in
For example, the first supporter may support the capillaries only between the window portion and the sample injection part, or as shown in
Non limitative but preferred shapes of the first support layer 1 and the second are plate-like shapes 20 to 100 μm in thickness. The materials of the first support layer 1 and the second support layer 6 depend on the application. Examples of good, electrical insulators are plates used in printed wiring boards, for example, epoxy resin plates and polyimide resin plates, and film used in flexible printed wiring boards, for example, polyimide film such as CAPTON (Trade name) film produced by E. I. Du Pont de Nemours and Company, polyethylene terephthalate (PET) films such as TETRON (Trade name) film produced by Teijin Ltd., and polyphenylene sulfide (PPS) film such as TORERINA (Trade name) produced by Toray Industries, Inc. Examples of materials with high heat-releasability are metal plates, such as aluminum, copper and SUS, glass plates and quartz plates. The surfaces of metal plates are preferably covered with a resin coating layer of an electrically insulating resin, such as epoxy resin, polyimide resin and silicone resin.
A suitable example of the second supporter 40 is a V-grooved substrate, which is a bloc, such as a quartz, glass, SUS or plastic bloc, having parallel V-grooves on one surface. The capillaries can be kept in parallel at equal intervals by equalizing the intervals of the V-grooves to those of the capillaries and inlaying the capillaries in the V-grooves individually.
The first adhesive layer 2 and the second adhesive layer 5 are preferably formed of a tacky adhesive, for example, polyisobutylene such as BISTANEX MML-120 (Trade name, produced by Tornex Co., Ltd.), acrylonitrile-butadiene rubber, such as NIPOL N1432 (Trade name, produced by Nippon Zeon Co., Ltd.), and chlorosulfonated polyethylene such as HIGHPARON 20 (Trade name, produced by E. I. Du Pont de Nemours and Company). Such materials can be formed into an adhesive layer by dissolving the material in a solvent, directly applying to the first support layer or the first support layer and the second support layer and then drying. These materials may contain additives, such as crosslinking agents and flame retardants, for each purpose as required. Other examples of usable materials include acrylic resin adhesives, such as No. 500 (Trade name, produced by Nittoh Denko, Co., Ltd.), double-sided adhesive tapes such as A-10, A-20, A-30 (Trade name, produced by Three M Co., Ltd.), and silicone resin adhesives such as silicone adhesive sheet S9009 (Trade name, produced by Dow Corning Asia Co., Ltd.). These materials can be directly laminated on the first support layer or on the first adhesive layer and the second adhesive layer.
Examples of usable capillaries include commercially available glass capillaries. Preferred glass capillaries have, as an outermost layer, coating of a resin for glass protection. Suitable examples of such a resin include polyimide resin, silicone resin, fluorocarbon resin and epoxy resin. TSP, TSG and TSU (Trade name, produced by Polymicro Technologies Co., Ltd.) and capillary tubes produced by Moritex Co., Ltd. are examples of the glass capillaries having, as an outermost layer, coating of a resin for glass protection. The inside diameter and outside diameter of the capillaries may be selected depending on the purpose of usage.
According to the invention, a numerically controlled apparatus is used to lay a plurality of capillaries on the first adhesive layer. An example of the apparatus is disclosed in Japanese Patent Application Examined Publication No. S50-9346 (1975). The apparatus comprises a machining table for fixing thereon a pressure sensitive adhesive-clad base material by using riveting heads, a conductor wire feeding starter for feeding and laying a conductor wire on the base material into a desired line shape, and a cutter for cutting the conductor wire at a prescribed position. The apparatus is applicable to the method of the invention by replacing the conductor wire with a capillary, the adhesive-clad base material with a first support layer bearing a first adhesive layer. Laying the capillaries involves the problem that capillaries are easily broken on bending rapidly and sharply. A solution for laying capillaries without causing breakage nor leaving local stress is laying the capillaries to draw smooth circular arcs.
It is desirable the capillaries are preferably applied with a load while being laid on the first adhesive layer. It is also desirable the first adhesive layer and/or the capillaries are applied with energy convertible into heat while being laid on the first adhesive layer. For example, thermal energy can be applied by incorporating a heater inside the machining table for fixing the first support layer or by applying ultrasonic wave or by irradiating a laser ray to the capillaries or the first adhesive layer. The apparatus to be used is not limited.
The specifications of the sample injection portion 7 and the window portion 11 including sizes should be designed to fit the objective apparatus. At the sample injection portion 7 and the window portion 11, the first supporter A (that is, the first support layer 1, the first adhesive layer 2, the second adhesive layer 5 and the second support layer 6) is removed to expose the capillaries 4. The capillaries 4 exposed at the sample injection portion 7 and the window portion 11 should align in parallel at equal intervals. The capillaries should have equal distances between the terminating ends 8 in the sample injection portion 7 and the detection parts 9 defined as intersections of the capillaries 4 and a plane intersecting perpendicularly to the axes of the capillaries 4 in the window portion 11. The tolerance on the intervals and distances may be balanced with the measuring accuracy. Tolerance of ±0.5% or less is desirable for highly accurate measurements. The allowances may be larger when high accuracy is not required.
In general, the capillaries used have equal inside and outside diameters, and the intervals between the capillaries in the window portion 11 are desirably equal to the outside diameters of the capillaries, so that neighboring capillaries contact each other. The intervals between the capillaries at the sample injection portion 7 desirably are equal to those between wells containing a sample. It is also desirable to align the terminating ends 8 of the capillaries on one straight line.
When the capillaries used are covered with protecting coating, the coating layer in the window portion 11 should at least partially be peeled off not to intercept the irradiated light and excited light. Generally, it should be peeled off in a range of 1 to 5 mm at the detection parts 9, where the light is irradiated to and received. The value should be determined in accordance to the specifications of measuring apparatuses.
The first supporter may be removed at the window portion 11 and sample injection portion 7, for example, by peeling it off by hand labor, laser rays, or ozone asher or plasma asher disclosed in Japanese Patent Application Unexamined Publication No. 2002-082094. These means may be combined. Care should be taken in peeling by hand labor because excess force may be applied to disposition or break the capillaries. Laser light and ashers are particularly effective in keeping the capillary array accurate and preventing breakage. Laser rays, ozone ashing and plasma ashing are also applicable for peeling off the resin coating layer covering the capillary for protection.
Various ways may be employed to laminate the second support layer (in the embodiment of
The first supporter is then subjected to outside machining. The machining may be performed by cutting with a cutter or by pressing a metal cutting die shaped into the desired outside shape. Compared to cutters unsuitable to automation and cutting dies requiring much labor for production, preferred are numerically controlled laser machines, which require only the input of working data. As to laser machines, compared to high power machines specially designed for cutting, laser perforators of higher laser output per unit time, which have been recently used for printed wiring boards, are preferred to minimize scorching, because a point is perforated with a plurality of shots and the perforating point is moved repeatedly by about half the hole diameter.
The capillary electrophoresis apparatus of the invention comprises an electrophoresis member of one embodiment according to the invention wherein the first supporter has an opening including the window portion of the capillary layer, and a means for reflecting a laser ray in the opening to irradiate the laser ray to the detection parts of the capillaries through a plane parallel to the plane wherein the axes of the capillaries lie in parallel. The laser ray may be irradiated from one direction or from two opposed directions. For example, the means for reflecting a laser ray to the detection parts comprises a light source of the laser ray and at lease one mirror or prism arranged at least in the opening so as to reflect the laser ray irradiated from the light source. In the opening, only one mirror or prism may be arranged to face only one side of the parallel capillary array, or two may be arranged to face both sides respectively. The latter arrangement enables irradiating laser rays to the detection parts of the capillaries from two opposed directions. In this case, two light sources may be used, or a laser ray from one light source may be split by a beam splitter.
Analysis with the capillary electrophoresis of the invention is performed, for example, by further using a means for feeding a separation medium and a buffer, a means for applying voltage between both ends of each capillary fed with a separation medium and a buffer to drift the sample in the capillaries and a means for detecting the fluorescence emitted from the drifting sample by the irradiation of the laser ray.
The invention will be described in more detail with reference to the following Examples, which however are not to be construed to limit the scope of the invention.
In the product electrophoresis member, all the distances from the detection parts 9 and the terminating ends 8 in the sample injection portion 7 measured 20 cm±0.5 mm. The glass capillaries, at the window portion 11 including the detection parts 9, were aligned at intervals of 150 μm±10 km, and at the sample injection portion 7, at intervals of 4.5 mm±0.1 mm. The capillaries were free of damage all over the laid area.
As shown in
As shown in
The injection 12 of the electrophoresis member 13 is inserted into one channel of a diversion bloc 16 having a T-shaped channel, and is sealed by a rubber gasket. One of the remaining two channels in the diversion bloc 16 is connected through a tube 20 to a syringe 17 filled with a separation medium, the other through a tube 19 to a channel in a buffer block 18. The tube 19 and tube 20 are TEFLON (Trade name) tubes of 1 mm-inside diameter, and the diversion bloc 16 and buffer bloc 18 are made of a transparent acrylic resin, and the channels are 1 mm in inside diameter. The channel in the buffer bloc 18 is bent upward in the bloc and connected to a larger, crock-shaped buffer tank 18a. The connection part 18b between the channel in the buffer bloc 18 and the buffer tank 18a is opened and shut by the vertical motion of a piston 21. When the connection part 18b is opened, the syringe 17 is pushed to fill the separation medium into the tubes 19 and 20, the channel in the diversion bloc 16 connecting them and finally the channel in the buffer bloc 18. The buffer tank 18a has an upper open end, and a predetermined quantity of buffer is poured into therefrom. Thereafter, the piston 21 descends to shut the channel of the buffer bloc 18, and the syringe 17 is pushed again to fill now the separation medium into the capillary 4 of the electrophoresis member 13. The syringe 17 is pushed by an electromotive stage 24, and the piston 21 is vertically moved by an electromotive solenoid 22. Examples of suitable separation media are aqueous solution of acrylamide or hydroxyethyl cellulose. An example of a suitable buffer is an aqueous solution containing as main components tris(hydroxymethyl)aminomethane, boric acid and EDTA (hereinafter will be called TBE).
In a buffer bath 32, the lower ends of the capillaries 4 are dipped in the buffer together with an electrode 27 having sixteen projections paired with the capillaries respectively. An electrode 23 is dipped in the buffer in the buffer bloc 18. High voltage is applied between the upper ends and lower ends of the capillaries 4 by a high tension power source 28 connected to electrodes 27 and 23.
As shown in
All the procedures including filling the separation medium, injecting the sample and electrophoresis are automatically performed by computer control.
Although a laser ray was diverted into two by the beam splitter 35 to irradiate the detection parts 9 of the capillaries from both sides in this example, irradiation from one side without the diversion of the laser ray is sufficient for lesser capillaries, such as four capillaries. In such a case, the beam splitter 35 may be replaced by a mirror, and the number of mirrors and prisms can be reduced to half.
The capillaries in the sample injection portion are preferably spaced at intervals given by dividing 9 mm by an integer because the wells of the microtiter plate 39 is generally spaced at intervals given by dividing 9 mm by an integer. In this example wherein the integer is 2 and the intervals are 4.5 mm, a preferred is a microtiter plate with 384 wells. Of course, a microtiter plate with 96 wells may also be used by changing the integer to 1 to give intervals of 9 mm.
As described above, according to the invention, there are provided an electrophoresis member wherein capillaries are aligned accurately and an efficient method of producing the electrophoresis member. Further, the most part of capillaries in the electrophoresis member is shielded from the air to improve the heat-releasing efficiency, allowing very high speed analysis with higher voltage gradient compared to the conventional capillary arrays.
| Number | Date | Country | Kind |
|---|---|---|---|
| 2002-244676 | Aug 2002 | JP | national |
| Number | Date | Country | |
|---|---|---|---|
| Parent | 10628274 | Jul 2003 | US |
| Child | 11704966 | Feb 2007 | US |
