Endochitinase gene induced by osmotic stress and abscisic acid isolated from the wild tomato Lycopersicon chilense Dun

BACKGROUND OF THE INVENTION
Water deficit is one of the most widespread environmental stresses limiting plant productivity and distribution (Fisher and Turner, 1978). However, depending on their level of resistance, many plant species can successfully cope with varying degrees of drought by modifying their morphological, physiological and metabolic processes (Clark and Durley, 1981; Hanson and Hitz, 1982). It is believed that the altered phenotype of plants with an enhanced ability to survive and grow under environmental stresses is largely the result of changes in gene expression (Sachs and Ho, 1986). Indeed, It has been well documented that plant adaptive responses to water stress are accompanied by the accumulation of specific mRNAs (Bray, 1988; Chen and Tabaeizadeh, 1992a,b). The changes in gene expression can also be partly induced by application of exogenous abscisic acid (Bray, 1988; Chen and Tabaeizadeh, 1992a,b), the plant hormone which appears to modulate the response of plants to water-stress (Skriver and Mundy, 1990). During the last few years, a number of drought- and ABA-responsive genes have been isolated and characterized from several species (Baker et al., 1988; Mundy and Chua, 1988; Gomez et al., 1988; Skriver and Mundy, 1990; Chen et al., 1993). These gene products may protect cells from damage at low water potentials (Baker et al., 1988).
STATEMENT OF THE INVENTION
We have isolated several drought- and ABA-induced cDNA clones from the wild tomato Lycopersicon chilense (Chen and Tabaeizadeh, 1992a), a natural inhabitant of extremely arid regions in South America (Rick, 1983). Here is described the characterization of two of these clones, pchtI and pcht28. They were identified to encode acidic endochitinase (EC 3.2.1.14, chitinase). Purified chitinases have shown the inhibition of fungal growth (Schlumbaum et al., 1986; Mauch et al., 1988). A direct role of endochitinase in plant defense against fungal infection (Boller, 1989; Collinge et al., 1993) has been suggested.
DESCRIPTION OF THE INVENTION
We were interested in understanding the molecular basis of drought resistance in L. chilense. In an attempt to investigate the role of drought and ABA-inducible genes, a cDNA library was obtained using poly(A) .sup.+ RNA prepared from leaves of plants which were drought-stressed for 4 days (Chen and Tabeizadeh, 1992b). By differential screening i.e. comparative to control plants, 8 clones were preferentially hybridized with the probes produced from drought- and ABA-treated plants and were first isolated (Chen and Tabaeizadeh, 1992b). The sequence analysis showed that one of these clones, designated as pLC-15, was related to chitinase, sharing 77% amino acid sequence identity with the acidic chitinases PR-P and PR-Q from tobacco (Payne et al., 1990). Because the pLC-15 sequence was not a complete coding sequence, the same cDNA library was rescreened with .sup.32 P-labelled pLC15 in order to isolate a full-length cDNA clone. One of the positive clones, having the longest insert (designated as pchtI, for chitinase) was characterized. The sequence analysis showed that this clone was still a partial cDNA. Thus, a 5' fragment of pchtI insert was used as the probe to screen again the same library. The longest cDNA clone, designated as pcht28, contains an insert of approximately 970 base pairs (bp). It was revealed to be full-length after sequence analysis.
Drought results in many secondary adverse effects on plants. For example, plants under water stress often become more susceptible to various pathological diseases (Simpson, 1981). As a result, besides the direct induction of anti-dessication proteins, higher plants should have evolved drought-inducible defensive mechanisms against pathogen attack under this stressful environment. The pchtI and pcht28, drought-inducible chitinase genes, seem to be two of the examples.
In higher plants, chitinases are members of a group of proteins known as pathogenesis-related (PR) proteins that increase in response to pathogen infection (Boller, 1989). The alignment of the predicted amino acids from different plants indicated that there are at least three classes of endochitinases: Class I, basic chitinases with an N-terminal cysteine-rich domain and a highly conserved main structure; Class II, acidic proteins which are similar to class I chitinases but lack the cysteine-rich domain; and class III chitinases lack sequence similarity to class I or II enzymes and may be basic or acidic proteins (Shinshi et al., 1990). Different isoenzymes of chitinase have evolved completely different patterns of gene expression and are targeted to different subcellular locations. Class I chitinases are highly expressed in roots and basal leaves (Neale et al., 1990) and are induced by ethylene (Boller, 1988; Memelink et al., 1990). The mature enzyme appears to be localized primarily in the plant cell vacuole (Boller, 1988). Whereas, class II chitinases are expressed at low levels in different organs of healthy plants with flowers being the highest (Memelink et al., 1990). Ethylene has only a minor effect on their expression level. The enzymes are located extracellularly (Parent et al., 1988). Class III chitinases are induced by salicylic acid and the enzyme accumulates in the extracellular spaces of leaves (Metraux et al., 1989).
Analysis of the amino acid sequence suggests that the object of the present invention, pcht28 and pchtI proteins belong to class II chitinase. Our results show that these genes exhibit an organ-specific expression pattern in L. chilense plants. In contrast to the basic isoforms of class I, the encoded chitinase is undectable in roots but exhibits a high level in leaves. Moreover, we found that these members of the chitinase genes have evolved a novel regulation pattern, being highly inducible by osmotic stress. It is believed that the endogenous hormone ABA is involved in mediating the response of plants to osmotic stress. The data shown below demonstrate that application of exogenous ABA to plants allows to mimic the induction effect and strongly supports this assumption. This result is in contrast with that of Leah et al. (1991) where an inhibitory effect of ABA on barley acidic chitinase (class III) was observed.
Different regulation patterns of expression for the three classes of chitinase genes and distinct subcellular location of their corresponding enzymes, presumably reflect their different biological functions in the protection of plants against pathogens. Purified chitinases have shown an inhibition of fungal growth (Schlumbaum et al. 1986; Mauch et al. 1988).
Due to its osmotic stress- and ABA-inducible properties, we assume that the acidic chitinase of class II such as the one encoded by pcht28 and pchtI plays a particular role in protecting plants from pathogen attack under stressful environments.
Experimental Procedures
Plant materials.
Seeds of Lycopersicon chilense Dun. (LA1930 Peru) were kindly provided by Dr. C. M. Rick (Tomato Genetics Stock Center, University of California, Davis, Calif.). Seedlings were grown in a growth chamber as described previously (Chen and Tabaeizadeh, 1992b). In order to avoid the problem of genetic variability among the plants, one plant (designated as P.sub.15) was propagated by cutting, and the resulting clones were used for all subsequent experiments.
Cell suspension cultures of Lycopersicon chilense were established and maintained as reported previously (Greer and Tabaeizadeh, 1991).
Isolation of cDNA clones. A drought- and ABA-responsive endochitinase cDNA clone pLC15 was selected from a cDNA library of leaves from drought-treated L. chilense plants (Chen and Tabaeizadeh, 1992b). .sup.32 P-labelled pLC15 cDNA was used to rescreen the same library for other cDNA clones. The cDNA library was rescreened again with the isolated cDNA clone pchtI as probe.
Nucleotide and amino acid sequence analysis.
Selected cDNAs were subcloned into pSK and completely sequenced in both directions by the dideoxynucleotide chain-termination method (Sanger et al., 1977). Suitable sequencing primers were synthesized on an Applied Biosystems Model 380A synthesizer. Computer analysis of DNA and amino acid sequences was performed using the Wisconsin Genetics Computer Group sequence analysis software package (Devereux et al., 1984). It is understood that, because of the degeneracy of codons, variations in the nucleotidic sequences can occur without modifying the primary structure of the claimed proteins. Such variations are under the scope of this invention.
Experimental treatments.
Plants (45 days after vegetative propagation) were subjected to drought treatment by discontinuing regular watering. Control plants were watered as usual every day. Salt stress was imposed for 4 days by watering 45-day-old plants with half-strength Hoagland solution containing 200 mM NaCl. Exogenous ABA was applied to detached leaves by placing petioles in a solution of 1 mM ABA (Sigma) prepared in 10 mM NaHCO.sub.3 for 6 h.
Cultured suspension cells 4 days after sub-culturing were subjected to the different stress treatments for a 24 h period except in the case of heat shock and ABA where exposure times were 0.5 h and 4 h; and 4 h and 24 h, respectively. NaCl, mannitol and ABA treatments were carried out by adding these chemicals into the culture media. Heat shock and cold stress were imposed by incubating suspension cells at 39.degree. C. and 4.degree. C., respectively.
Isolation of DNA and RNA.
Genomic DNA was isolated from etiolated leaves according to Maniatis et al. (1982). Total RNA and poly(A) .sup.+ RNA were isolated as described previously (Chen and Tabaeizadeh 1992b).
Northern and Southern blot analysis.
RNA was denatured with formaldehyde, size-fractionated by electrophoresis in agarose gels, blotted to Hybond-N membranes, and hybridized with .sup.32 P-DNA as described previously (Chen and Tabaeizadeh, 1992b). As a control, the same membrane was rehybridized with rDNA probe from Coprinus cinereus (Wu et al., 1983). All samples were shown to have the same quantity of RNA (data not shown). DNA was digested with restriction endonucleases, subjected to agarose gel electrophoresis, blotted to Hybond-N membrane, and hybridized with .sup.32 P-labelled DNAs according to Maniatis et al. (1982). Filters were washed twice at room temperature and once at 65.degree. C. in a buffer containing 0.3.times.SSPE (20.times.: 20 mM EDTA, 200 mM NaH.sub.2 HPO.sub.4 pH 7.5, 3.6M NaCl) and 0.1% SDS.
Expression of Pcht28 in E. coli and detection of chitinase activity.
pcht28 cDNA was inserted in frame into EcoR I-Xho I sites within the multiple cloning site of the pBluescript SK.sup.- vector (Stratagene). The expression of chitinase protein driven by the lac promoter occurs by depression with 1 mM IPTG in E. coli as a chimeric fusion with .beta.-galactosidase (Maniatis et al., 1982). SDS-PAGE was performed to detect chitinase activity according to Trudel and Asselin (1989) with the modification of using 14% polyacrylamide gels. Lytic bands were visualized with transilluminator (UV light) after staining with Calcolfluor White MR2. Proteins from the E. coli cells containing pBluescript SK.sup.- vector served as controls. A similar expression vector could be obtained using the same above-described strategy, using the same or different restriction enzymes and using, if necessary, synthetic linkers provided that the resulting recombinant plasmid allows for expression of pchtI-encoded chitinase. It is understood that many commercial vectors and cells can be used in this kind of expression assay. As far as the vectors and the recipient cells are compatible to allow for expression of the claimed nucleotide sequences, they are considered to be under the scope of the present invention. Also under the scope of this invention are plasmidic vectors and phages in which propagation and selection of the claimed nucleotidic sequences can be effected.
The invention will be more readily understood by the way of the following Examples and Figures which purpose is not to limit the scope of the invention but rather to illustrate it.

BRIEF DESCRIPTION OF THE FIGURES
FIG. 1. Nucleotide and predicted amino acid sequences of the cDNA clone pcht28 (SEQ ID NO: 1 and SEQ ID NO: 3, respectively) encoding acidic chitinase. Nucleotide positions and amino acid residues are numbered on the right. The putative signal peptide and the polyadenylation signal are underlined. Sequence of the pchtI clone (SEQ ID NO: 2) is shown on the line above the pcht28 sequence with the differences indicated. Differences in the deduced protein sequence (SEQ ID NO: 4) are indicated below the pcht28 protein sequence in parenthesis. The 5' end of the pchtI cDNA is indicated with vertical arrow. Insertions or deletions in the 3' end of the clone are designated by dashes.
FIG. 2. Comparison of the amino acid sequence of pcht28-encoded protein with that of the tobacco acidic endochitinase PR-Q precursor (SEQ ID NO: 5). Homologous amino acids are enclosed in boxes. The signal peptides are underlined.
FIGS. 3A and 3B. Northern hybridization analysis of pcht28 gene expression in different organs of intact plants (A) and detached leaves (B). Two .mu.g of total RNA were size-separated on a formaldehyde-1.2% agarose gel, transferred to Hybond-N membranes, and hybridized with .sup.32 P-labelled cDNA insert of pcht28. A: RNA was isolated from roots (R), stems (S) or leaves (L) of plants watered every day as usual (control), plants subjected to water stress for 4 days and plants treated with 200 mM of NaCl for 4 days. B: RNA was extracted from detached leaves treated with 10 mM NaHCO.sub.3 (control), air dried (dessication) or 1 mM ABA prepared in 10 mM NaHCO.sub.3 solution for 6 h.
FIGS. 4A and 4B. Northern hybridization analysis of pcht28 gene expression in cultured suspension cells of L. chilense. A: RNA was isolated from cell suspensions cultured in the regular medium (control), and from those subjected to different treatments. NaCl (0.1 and 0.2M), mannitol (200 mM) and cold stress (CS) treatments were carried out for 24 h periods. Cells were exposed to heat shock (HS) treatment at 39.degree. C. for 0.5 h and 4 h. Cold stress was imposed by incubating suspension cells at 4.degree. C. B: RNA was isolated from cell suspensions cultured in the regular maintenance medium (containing 2,4-D), medium without 2,4-D, regular medium containing 20 .mu.M or 100 .mu.M ABA.
FIGS. 5A and 5B. Southern blot analysis of L. chilense genomic DNA. 10 .mu.g of DNA from etiolated leaves were digested with Bam HI (lane 1), Eco RI (lane 2) and Hind III (lane 3), fractionated on a 1% agarose gel, transferred to a Hybond-N membrane and hybridized with the .sup.32 P-labelled cDNA insert of pcht28 (A) or with 3' fragment of Pcht28 (B). Lambda DNA digested with Eco RI and Hind III was included as molecular size standards.
FIG. 6. Chitinase activity assay of the pcht28 protein. Total proteins isolated from E. coli were separated on a 14% SDS-polyacrylamide gel containing glycol chitin as substrate. The lytic bands were visualized with transilluminator (UV light) after staining with Calcolfluor White MR2. Protein samples correspond to the E. coli cells containing pSK.sup.- vector only (Ec), the E. coli cells containing pSK.sup.- vector with the insert of pcht28 cDNA without IPTG (En), the E. coli cells containing pSK.sup.- vector with the insert of pcht28 cDNA in the presence of 1 mM IPTG for 4 h (E4) and 8 h (E8).

EXAMPLE 1
Isolation of drought- and ABA-induced chitinase cDNAs.
In an attempt to investigate the role of drought and ABA-inducible genes, a cDNA library was prepared in lambda Uni-ZAP XR vector (Stratagene synthesis kit) using poly(A) .sup.+ RNA prepared from leaves of plants which were drought-stressed for 4 days (Chen and Tabaeizadeh, 1992b). Approximately 10,000 clones of this library were replica plated and differentially screened with cDNA probes prepared from poly(A) .sup.+ RNA of leaves from control plants, plants subjected to 4 days of drought treatment and plants treated with ABA for 2 days. In total 8 clones preferentially hybridizing with the probes produced from drought- and ABA-treated plants were firstly isolated. The sequence analysis showed that one of these clones, designated as pLC-15, was related to chitinase, sharing 77% amino acid sequence identity with the acidic chitinases PR-P and PR-Q from tobacco (Payne et al., 1990). Because the sequence analysis revealed an incomplete coding sequence, we pursued further for a full-length cDNA clone. Towards this end, 100,000 plaques of the cDNA library were rescreened with .sup.32 P-labelled pLC15 in order to isolate a full-length cDNA clone. Three positive cDNA clones having long inserts were identified. One of them containing the longest insert (designated as pchtI, for chitinase) was characterized. The sequence anlysis showed that this clone was still a partial cDNA. Thus, the 5'-EcoR I-Pst I fragment of the pchtI insert was used as the probe to rescreen 200,000 plaques of the library. Thirty clones which showed strong hybridization signals with pchtI under high-stringency washing conditions were selected and restriction analyzed. Identical to the cDNA insert of pchtI, all of these clones contained 3 internal Pst I sites. The longest cDNA clone, designated as pcht28 (for chitinase), contains an insert of approxlmately 970 bp. It appeared to be full-length when compared to the size of mRNA revealed by Northern blot, and was selected for further analysis.
EXAMPLE 2
Nucleotide sequence of pcht28 cDNA and its homology to endochitinase
The nucleotide sequence analysis showed that the pcht28 clone contains a full-length cDNA of 966 bp (FIG. 1). The longest open reading frame is 759 bp, corresponding to 253 amino acid residues. A translation initiation codon located at 21 to 23 bp down stream from 5'-end and a translation termination codon is at 780 to 782. A canonical polyadenylation signal (AATAA) is present in the 3' untranslated region 80 nucleotides upstream from the poly(A) tail.
Hydropathy plots highlighted that the protein encoded by pcht28 contains a highly hydrophobic region in the N-terminal sequence, suggesting that it is a secreted protein. It is predicted to have a peptidase signal cleavage site at alanine-glutamine (position 21-22). The mature polypeptide is calculated to have a total molecular weight of 24,943 and is slightly acidic with an estimated pI value of 6.2 and charge of -1.8 at pH 7.0.
The sequence of pchtI is similar to that of pcht28 (FIG. 1). There are four nucleotides different in the coding region due to nucleotide substitution, insertion or deletion. The homologous cDNA clone, pLC15, was also sequenced, and found to be identical to that of pchtI. pchtI and pcht28 are beleived to be isoforms of the same enzyme.
The homology of DNA sequence between pchtI and pcht28 suggests that the first clone obtained, pchtI may contain the whole coding sequence of a chitinase but the first three codons.
Comparison of the deduced protein sequence by computer analysis revealed that the pchtI- and pcht28-encoded proteins share an extensive homology with chitinases from higher plants. The pcht28-encoded protein is remarkably similar to the acidic chitinases from tobacco (FIG. 2) as well as pchtI (data not shown). The mature protein of pcht28 chitinase shares 78% and 77% identity with those of the class II isoforms PR-Q and PR-P from tobacco, respectively (Payne et al., 1990). Alignment of the signal sequences of pcht28 protein with those of PR-Q and PR-P exhibits 66% identity. Moreover, all of them are predicted to be cleaved between an ala/glu junction.
The homology to basic chitinases (class I) was limited to the 3' region (corresponding to amino acids 105 to 253). In this region, it exhibits 60% and 61% identity with basic chitinase precursors from tobacco (Shinshi et al., 1990) and potato (Gaynor, 1988), respectively, suggesting that this region could be the functional domain for enzymatic activity of chitinase.
In contrast, no significant homology was found between the pcht28 protein and acidic chitinases (class III) from cucumber (Metraux et al., 1989) and barley (Leah et al., 1991).
EXAMPLE 3
The expression of pchT28 gene is induced by osmotic stress and ABA
Northern blot analysis revealed that pcht28 was organ-specifically expressed in nonstressed plants, showing high levels in leaves and low levels in stems, but was undetectable in roots (FIG. 3A; similar results were obtained for pchtI, not shown). However, a drought treatment of 4 days lead to an accumulation of the mRNA in all three organs, with the highest levels in leaves. A similar induction effect was also observed for plants treated with 200 mM NaCl for 4 days (FIG. 3A), suggesting that this chitinase is osmotic-stress-regulated.
To further confirm the effect of osmotic stress on the expression pattern of the pcht28 gene, cell suspensions of L. chilense were also subjected to different treatments (FIG. 4A). The pcht28 gene exhibits a basal level of expression in these cells. Cells remarkably accumulated pcht28 mRNA when subjected to 24-hour periods of NaCl treatment. The expression of the pcht28 gene was also induced by mannitol, a nonionic osmoticum, supporting the hypothesis that the osmotic component of drought treatment is sufficient for pcht28 induction. The expression of the gene was also increased by cold (4.degree. C.) treatment. In contrast, heat shock (39.degree. C.) displayed a strong inhibitory effect on this gene.
ABA is generally considered to be the hormone which modulates plant response to drought and salinity stress (Skriver and Mundy, 1990). When this hormone was applied through the cut petiole of detached L. chilense leaves, a significant increase in pcht28 gene expression was found, comparing to the control (FIG. 3B; similar results obtained for pchtI, data not shown). In cells cultivated in the presence of ABA (20 or 100 .mu.M), the mRNA levels were up-regulated after 4 h of treatment and continued to increase over a period of 24 h (FIG. 4B). Culture of the cells in the growth medium (Greer and Tabaeizadeh, 1991) with or without 2,4-D did not significantly affect the expression level of pcht28 gene.
EXAMPLE 4
Southern blot analysis of pcht28 gene
To investigate the number of pcht28 genes, genomic DNA was extracted from L. chilense and digested with the restriction enzymes BamHI, EcoRI and HindIII. The completely digested DNA was gel electrophoresed and bloted to Hybond N membrane, and then hybridized with full lengthed pcht28 cDNA and the 3'-PstI-XhoI fragment of Pcht28 respectively (FIG. 5). The Pcht28 cDNA hybridized to four BamH1 bands, four Eco RI bands and two Hind III bands. The 3'-fragment hybridized to one BamH1 band, one EcoR1 band and two HindIII bands. These results suggest that there is a small gene family encoding Pcht28 related proteins in L. chilense.
EXAMPLE 5
Detection of chitinase activity after SDS-PAGE
The pcht28 protein was expressed in E. coli as recombinant protein fused with .beta.-galactosidase at its N-terminus. Total denatured proteins were subjected to SDS-PAGE in 14% polyacrylamide gels containing glycol chitin as the substrate. Chitinase activity was then analyzed after the treatment of the gel in a solution of buffered Triton X-100. FIG. 6 presents the results obtained with the protein samples expressed in E. coli. The time course of 0, 4 and 8 hours was used for inducing the expression. A strong band appeared for the cells containing the expression construct after 8 h of induction by IPTG, demonstrating that the pcht28 protein is indeed a chitinase.
EXAMPLE 6
Chitinase activity was measured in L. chilense control plants and plants under water stress (data not shown). The activity was remarkably higher in drought treated plants compared to the control plants. Once the drought treated plants were rewatered the activity was reduced almost to the control level.
EXAMPLE 7
Different genotypes of Lypersicon chilense Dun. (LA1930 and 2747, Peru) showing different tolerence to fungal pathogens have a positively correlated chitinase activity (data not shown).
The invention has been described herein with reference to certain preferred embodiments. However, as obvious variations thereon will become apparent to those skilled in the art, the invention is not considered limited thereto.
______________________________________Symbols for the amino acids______________________________________A Ala alanineC Cys cysteineD Asp aspartic acidE Glu glumatic acidF Phe phenylalanineG Gly glycineH His histidineI Ile isoleucineK Lys lysineL Leu leucineM Met methionineN Asn asparagineP Pro prolineQ Gln glutamineR Arg arginineS Ser serineT Thr threonineV Val valineW Trp tryptophanY Tyr tyrosine______________________________________
REFERENCES
Baker, J., Steele, C. & Dure III, L. (1988) Sequence and characterization of 6 Lea proteins and their genes from cotton. Plant Mol. Biol. 11, 277-291.
Boller, T. (1989) Ethylene and the regulation of antifungal hydrolases in plants. Oxf. Surv. Plant Mol. Cell Biol. 5, 145-174.
Bray, E. A. (1988) Drought-and ABA-induced changes in polypeptide and mRNA in tomato leaves. Plant. Physiol. 88, 1210-1214.
Chen, R. D. and Tabaeizadeh, Z. (1992a) Alteration of gene expression in tomato plants (Lycopersicon esculentum) by drought and salt stress. Genome 35, 385-391.
Chen, R. D. and Tabaeizadeh, Z. (1992b) Expression and molecular cloning of drought-induced genes in the wild tomato Lycopersicon chilense. Biochem. Cell Biol. 70, 199-206.
Chen, R. D., Campeau N., Greer, A. F., Bellemare G. and Tabaeizmadeh, Z. (1993) Nucleotide sequence of a novel abscissic acid and drought induced gene from the wild tomato Lycopersicon chilense. Plant Physiol. 103, 301.
Clarke, J. M. and Durley, R. C. (1981) The response of plants to drought stress. In Water Stress on Plants, (Simpson, G. M., ed), Praeger, New York, pp. 89-139.
Devereux, J., Hueberli, P. and Smithies, O. (1984) A comprehensive set of sequence analysis program for the VAX. Nucleic Acids Res. 12, 387-395
Fisher, R. A. and Turner, N. C. (1978) Plant productivity in the arid and semiarid zones. Annu. Rev. Plant Physiol. 29, 277-317.
Gaynor, J. J. (1988) Primary structure of an endochitinase mRNA from Solanum tuberosum. Nucleic Acids Res. 16, 5210.
Gomez, J., Sanchez-Martinez, D., Stiefel, V., Rigau, J., Puigdomenech, P. and Pages, M. (1988) A gene induced by the plant hormone abscissic acid in response to water stress encodes a glycine-rich protein. Nature 334, 262-264.
Greer A. F. and Tabaeizadeh Z. (1991) Characterization and plant regeneration of cell suspension cultures of Lycopersicon chilense. Can. J. Bot. 69, 2257-2260.
Hanson, A. D. and Hitz, W. D. (1982) Metabolic responses of mesophytes to plant water deficits. Annu. Rev. Plant Physiol. 33, 163-203.
Leah, R., Tommerup, H. and Mundy, J. (1991) Biochemical and molecular charactertzation of three barley seed proteins with antifungal properties. J. Biol. Chem. 266, 1564-1573.
Maniatis, T., Fritsch, E. P. and Sambrook, J. (1982) Molecular Cloning: A Laboratory Manual (Cold Spring Harbor Laboratory, Cold Spring Harbor, N.Y.).
Mauch, F., Mauch-Mani, B., and Boller, T. 1988. Antifungal hydrolases in pea tissue. Inhibition of fungal growth by combinations of chitinase and B-1,3 glucanase. Plant Physiol. 88:936-942.
Memelink, J., Linthorst, H. J. M., Schilperoot, R. A. and Hoge, H. C. (1990) Tobacco genes encoding acidic and basic isoforms of pathogenesis related proteins display different expression patterns. Plant Mol. Biol. 14, 119-126.
Metraux, J. P., Burkhart, W. B., Moyer, M., Dincher, S., Middlesteadt, W., Williams, S., Payne, G., Carnes, M. and Ryals, J. (1989) Isolation of a complementary DNA encoding a chitinase with structural homology to a bifunctional lysozyme chitinase. Proc. Natl. Acad. Sci. USA. 87, 896-900.
Mundy, J. and Chua N. H. (1988) Abscissic acid and water-stress induce the expression of a novel rice gene. EMBO J. 7, 2279-2286.
Neale, A., Wahleithner, J. A., Lund, M., Bonnett, H., Kelly, A., Meeks-Wagner, D. R., Peacock, W. J. and Dennis, E. S. (1990) Chitinase, B-1,3-Glucanase, Osmotin and Extension are expressed in tobacco explants during flower formation. The Plant Cell. 2, 673-684.
Parent, J. G., Hogue, R. and Asselin, A. (1985) Glycoproteins enzymatic activities, and b proteins in intercellular fluid extracts from hypersensitive Nicotiana species infected with tobacco mosaic virus. Can. J. Bot. 63, 928-931.
Payne, G., Ahl, P., Moyer, M., Harper, A., Beck, J., Meins, F. Jr and Ryals, J. (1990) Isolation of complementary DNA clones encoding pathogenesis-related proteins P and Q, two acidic chitinases from tobacco. Proc. Natl. Acad. Sci. USA. 87, 98-102.
Sachs, M. M. and Ho, T. H. D. (1986) Alteration of gene expression during environmental stress in plants. Annu. Rev. Plant Physiol. 37, 363-376.
Sanger, F., Nicklen, S. and Coulson A. R. (1977) DNA sequencing with chain terminating inhibitors. Proc. Natl. Acad. Sci. USA 83, 5463-5467.
Schlumbaum, A., Mauch, F., Vogeli U., and Boller, T. 1986. Plant chitinases are potent inhibitors of fungal growth. Nature 324:365-367.
Skriver, K. and Mundy, J. (1990) Gene expression response to abscissic acid and osmotic stress. The Plant Cell 2, 503-512.
Shinshi, H., Nauhaus, J. H., Ryals, J. and Means K. Fr. (1990) Structure of a tobacco endochitinase gene: Evidence that different chitinase gene can arise by transposition of sequence encoding cysteine-rich domain. Plant Mol. Biol. 14, 357-368.
Simpson, G. M. (1981) The value of physiological knowledge of water stress in plants. In Water Stess on Plants, (Simpson, G. M., ed), Praeger, New York, pp. 235-265.
Trudel, J. and Asselin A. (1989) Detection of chitinase activity after polyacrylamide gel electrophoresis. Analytical Biochem. 178:362-366.
Ward, E. R., Uknes, S. J., Williams, S. C., Dincher, S. S., Wiederhold, D. L., Alexander, D. C., Ahl-Goy, P., Metraux, J. P. and Ryals, J. A. (1991) Coordinate gene activity in response to agents that induce systematic acquired resistance. The Plant Cell. 3, 1085-1094.
Wu, M. M. J., Cassisdy, J. R. and Pukkila, P. J. (1983) Polymorphisms in DNA of Coprinus cinereus. Current Genet. 7, 385-392.
__________________________________________________________________________SEQUENCE LISTING(1) GENERAL INFORMATION:(iii) NUMBER OF SEQUENCES: 5(2) INFORMATION FOR SEQ ID NO: 1:(i) SEQUENCE CHARACTERISTICS:(A) LENGTH: 966 base pairs(B) TYPE: Nucleic Acid(C) STRANDEDNESS: Single(D) TOPOLOGY: Linear(ii) MOLECULE TYPE: cDNA to mRNA(vi) ORIGINAL SOURCE: Lycopersicon chilense(xi) SEQUENCE DESCRIPTION: SEQ ID NO: 1:GTTAAAAAGCCAGAGGAAAAATGAAGTTCAATATTGTATCACCAGTTGCA50CTGTCTTGTCTCTTTTTCTTGTTCCTAACAGGTACTTTAGCACAAAATGC100CGGTTCCATTGTAACGCGGGAATTGTTCGAACAAATGCTGAGTTTTAGGA150ACAATGACGCATGTCCTGCCAAAGGATTCTACACTTATGATGCATTCATA200GCTGCAGCCAATTCGTTTCCAGGTTTTGGTACTACTGGTGATGATACTGC250ACGTAAGAAGGAAATTGCTGCCTTTTTCGGTCAAACATCTCATGAAACTA300AGGGTGGTAGTGCAGGAACATTCACTGGAGGATATTGCTTTGTTAGGCAA350ATAGATCAGTCAGACAGATACTATGGCAGAGGACCTATCCAATTGACACA400CCAATCTAACTACGAACGAGCTGGACAAGGTATTGGTGTTGGACAAGACT450TAGTGAACAACCCTGATTTAGTTGCGACAGATCCTATAATATCATTCAGA500ACAGCAATATGGTTCTGGATGACAGCACAGGATAATAAACCATCATGCCA550CAACGTTATCATTGGACAATGGACGCCATCCCCTGCAGATACGGCAGCTA600ATAGAGTTCCAGGGTACGGTGTCATTACCAACATCATTAACGGTGGACTT650GAATGTAATATGGGTCCAAATACTGCAGTGGAAAGTCGAATTGGATTTTA700CAGGAGGTATTGTGGTATGTTGAATGTTCCTACTGGTGAAAATTTGGACT750GTAACAATCAAAAGAACTTCGCCCAGGGCTAAGCGTCTTTATATATAGAG800AGAATGCAAATTATGTTTATGTATTACGTTGTGAAGTCTATAAGTTATAT850TTGGATGTAATCAATAAGGGGATTCTGTATGCCCATTTAGAAAAATGGAA900GTTGATTTTCAGAAATACTAAAGTTATATGATTTTGATACTTTTGTTATA950AAAAAAAAAAAAAAAA966(2) INFORMATION FOR SEQ ID NO: 2:(i) SEQUENCE CHARACTERISTICS:(A) LENGTH: 253(B) TYPE: amino acid(D) TOPOLOGY: unknown(ii) MOLECULE TYPE: Protein(vi) ORIGINAL SOURCE: Lycopersicon chilense(xi) SEQUENCE DESCRIPTION: SEQ ID NO: 2:MetLysPheAsnIleValSerProValAla510LeuSerCysLeuPhePheLeuPheLeuThr1520GlyThrLeuAlaGlnAsnAlaGlySerIle2530ValThrArgGluLeuPheGluGlnMetLeu3540SerPheArgAsnAsnAspAlaCysProAla4550LysGlyPheTyrThrTyrAspAlaPheIle5560AlaAlaAlaAsnSerPheProGlyPheGly6570ThrThrGlyAspAspThrAlaArgLysLys7580GluIleAlaAlaPhePheGlyGlnThrSer8590HisGluThrLysGlyGlySerAlaGlyThr95100PheThrGlyGlyTyrCysPheValArgGln105110IleAspGlnSerAspArgTyrTyrGlyArg115120GlyProIleGlnLeuThrHisGlnSerAsn125130TyrGluArgAlaGlyGlnGlyIleGlyVal135140GlyGlnAspLeuValAsnAsnProAspLeu145150ValAlaThrAspProIleIleSerPheArg155160ThrAlaIleTrpPheTrpMetThrAlaGln165170AspAsnLysProSerCysHisAsnValIle175180IleGlyGlnTrpThrProSerProAlaAsp185190ThrAlaAlaAsnArgValProGlyTyrGly195200ValIleThrAsnIleIleAsnGlyGlyLeu205210GluCysAsnMetGlyProAsnThrAlaVal215220GluSerArgIleGlyPheTyrArgArgTyr225230CysGlyMetLeuAsnValProThrGlyGlu235240AsnLeuAspCysAsnAsnGlnLysAsnPhe245250AlaGlnGly(2) INFORMATION FOR SEQ ID NO: 3:(i) SEQUENCE CHARACTERISTICS:(A) LENGTH: 935 base pairs(B) TYPE: Nucleic Acid(C) STRANDEDNESS: Single(D) TOPOLOGY: Linear(ii) MOLECULE TYPE: cDNA to mRNA(vi) ORIGINAL SOURCE: Lycopersicon chilense(xi) SEQUENCE DESCRIPTION: SEQ ID NO: 3:AATATTGTATCACCAGTTGCACTGTCTTGTCTCTTTTTCTTGTTCCTAAC50AGGTACTTTAGCACAAAATGCCGGTTCCATTGTAACGCGGGAATTGTTCG100AACAAATGCTGAGTTTTAGGAACAATGACGCATGTCCTGCCAAAGGATTC150TACACTTATGATGCATTCATAGCTGCAGCCAATTCGTTTCCAGGTTTTGG200TACTACTGGTGATGATACTGCACGTAAGAAGGAAATTGCTGCCTTTTTCG250GTCAAACATCTCATGAAACTAATGGTGGTAGTGCAGGAACATTCACTGGA300GGATATTGCTTTGTTAGGCAAATAGATCAGTCAGACAGATACTATGGCAG350AGGACCTATCCAATTGACACACCAATCTAACTACGAACGAGCTGGACAAG400GTATTGGTGTTGGACAAGACTTAGTGAACAACCCTGATTTAGTTGCGACA450GATCCTATAATATCATTCAAAACAGCAATATGGTTCTGGATGACAGCACA500CCATAATAAACCATCATGCCACAACGTTATCATTGGACAATGGACGCCAT550CCCCTGCAGATACGGCAGCTAATAGAGTTCCAGGGTACGGTGTCATTACC600AACATCATTAACGGTGGACTTGAATGTAATATGGGTCCAAATACTGCAGT650GGAAAGTCGAATTGGATTTTACAGGAGGTATTGTGGTATGTTGAATGTTC700CTACTGGTGAAAATTTGGACTGTAACAATCAAAAGAACTTCGCCCAGGGC750TAAGCGTCTTTATATATAGAGAGAATGCAATTATGTTTATGTATTACGTT800GTGAAGTCAATAAGTTATATTTGGATGTAATCAATAAGGGGATTCTGTAT850GCCCATTTAGAAAAATGGAAGTTGATTTTCAGAAATAATAAAGTTATATG900ATTTTGATCATTTTGTTAAAAAAAAAAAAAAAAAA935(2) INFORMATION FOR SEQ ID NO: 4:(i) SEQUENCE CHARACTERISTICS:(A) LENGTH: 250(B) TYPE: amino acid(D) TOPOLOGY: unknown(ii) MOLECULE TYPE: Protein(vi) ORIGINAL SOURCE: Lycopersicon chilense(xi) SEQUENCE DESCRIPTION: SEQ ID NO: 4:AsnIleValSerProValAlaLeuSerCys510LeuPhePheLeuPheLeuThrGlyThrLeu1520AlaGlnAsnAlaGlySerIleValThrArg2530GluLeuPheGluGlnMetLeuSerPheArg3540AsnAsnAspAlaCysProAlaLysGlyPhe4550TyrThrTyrAspAlaPheIleAlaAlaAla5560AsnSerPheProGlyPheGlyThrThrGly6570AspAspThrAlaArgLysLysGluIleAla7580AlaPhePheGlyGlnThrSerHisGluThr8590AsnGlyGlySerAlaGlyThrPheThrGly95100GlyTyrCysPheValArgGlnIleAspGln105110SerAspArgTyrTyrGlyArgGlyProIle115120GlnLeuThrHisGlnSerAsnTyrGluArg125130AlaGlyGlnGlyIleGlyValGlyGlnAsp135140LeuValAsnAsnProAspLeuValAlaThr145150AspProIleIleSerPheLysThrAlaIle155160TrpPheTrpMetThrAlaHisHisAsnLys165170ProSerCysHisAsnValIleIleGlyGln175180TrpThrProSerProAlaAspThrAlaAla185190AsnArgValProGlyTyrGlyValIleThr195200AsnIleIleAsnGlyGlyLeuGluCysAsn205210MetGlyProAsnThrAlaValGluSerArg215220IleGlyPheTyrArgArgTyrCysGlyMet225230LeuAsnValProThrGlyGluAsnLeuAsp235240CysAsnAsnGlnLysAsnPheAlaGlnGly245250(2) INFORMATION FOR SEQ ID NO: 5:(i) SEQUENCE CHARACTERISTICS:(A) LENGTH: 253(B) TYPE: amino acid(D) TOPOLOGY: unknown(ii) MOLECULE TYPE: Protein(vi) ORIGINAL SOURCE: Nicotiana tabacum(xi) SEQUENCE DESCRIPTION: SEQ ID NO: 5:MetGluPheSerGlySerProMetAlaLeu510PheCysCysValPhePheLeuPheLeuThr1520GlySerLeuAlaGlnGlyIleGlySerIle2530ValThrSerAspLeuPheAsnGluMetLeu3540LysAsnArgAsnAspGlyArgCysProAla4550AsnGlyPheTyrThrTyrAspAlaPheIle5560AlaAlaAlaAsnSerPheProGlyPheGly6570ThrThrGlyAspAspThrAlaArgArgLys7580GluIleAlaAlaPhePheGlyGlnThrSer8590HisGluThrThrGlyGlySerLeuSerAla95100GluProPheThrGlyGlyTyrCysPheVal105110ArgGlnAsnAspGlnSerAspArgTyrTyr115120GlyArgGlyProIleGlnLeuThrAsnArg125130AsnAsnTyrGluLysAlaGluThrAlaIle135140GlyGlnGluLeuValAsnAsnProAspLeu145150ValAlaThrAspAlaThrIleSerPheLys155160ThrAlaIleTrpPheTrpMetThrProGln165170AspAsnLysProSerSerHisAspValIle175180IleGlyArgTrpThrProSerAlaAlaAsp185190GlnAlaAlaAsnArgValProGlyTyrGly195200ValIleThrAsnIleIleAsnGlyGlyIle205210GluCysGlyIleGlyArgAsnAspAlaVal215220GluAspArgIleGlyTyrTyrArgArgTyr225230CysGlyMetLeuAsnValAlaProGlyGlu235240AsnLeuAspCysTyrAsnGlnArgAsnPhe245250GlyGlnGly__________________________________________________________________________

Endochitinase gene induced by osmotic stress and abscisic acid isolated from the wild tomato Lycopersicon chilense Dun

Information

Patent Number

Date Filed

Date Issued

Inventors

Original Assignees

Examiners

Agents

CPC

US Classifications

Field of Search

US

International Classifications

Abstract

Description

Claims

Non-Patent Literature Citations (34)