Enzyme array and assay

Information

  • Patent Application
  • 20060275855
  • Publication Number
    20060275855
  • Date Filed
    October 27, 2003
    21 years ago
  • Date Published
    December 07, 2006
    17 years ago
Abstract
The present invention relates to an enzyme array and assay for use with a mass spectrometer, particularly, though not exclusively, a laser desorption/ionisation, such as a MALDI mass spectrometer. It includes a method of determining the activity of an enzyme, or the effect a test compound has on the activity of the enzyme, using mass spectrometry comprising: providing a probe carrying an immobilised enzyme; optionally introducing the test compound; introducing one or more reactants to the immobilised enzyme for a time, and in a form sufficient for a reaction to take place; drying the probe; subjecting the probe to mass spectrometry; and determining the activity of the enzyme, or the effect the test compound had on the activity of the enzyme, by detecting the presence and/or absence of one or more products and/or the one or more reactants and is exemplified with reference to a kinase assay. It also provides an array for use with the method.
Description
CROSS REFERENCE TO RELATED APPLICATIONS

This application claims priority from GB0311946.8, filed May 23, 2003, GB0224872.2, filed Oct. 25, 2002 and PCT/EP02/14859, filed Dec. 20, 2002 each of which is hereby incorporated by reference in its entirety.


FIELD OF THE INVENTION

The present invention relates to an enzyme array and assay and more particularly to a kinase array and assay for use with a mass spectrometer, particularly, though not exclusively, a laser desorption/ionisation, such as a MALDI mass spectrometer.


BACKGROUND TO THE INVENTION

Proteomic applications for mass spectrometry have seen a strong growth in recent years. Analytical methods used in proteomics are mainly based on 2D-gel electrophoresis for protein separation, and either mass spectrometry or Edman degradation for protein identification. The limitations of 2D gel electrophoresis include relatively poor resolution, sensitivity and reproducibility. As a result proteomic methods which avoid 2D-gel electrophoresis such as Isotope Coded Affinity Tag (ICAT)1, Tandem Affinity Protein (TAP)2 purification and the use of protein microarrays3 are gaining popularity.


Furthermore, these new methods have broadened the scope of proteomics from collecting and cataloguing differential expression data to a stage where relations between molecules can be assigned and this has been referred to as functional proteomics. Protein microarrays have recently been used to analyze 119 yeast kinases4and a major fraction of the yeast proteome5.


Protein microarrays have been analyzed by enhanced chemi-luminescence (ECL), fluorescent or radioactive labels or via antibody based detection systems, but not to date by mass spectrometry.


The current reliance on the use of labeled ligands, such as antibodies or labeled probes, to analyze protein microarrays imposes constraints on the applications for protein microarrays. Hence a sensitive label free detection system would be of great advantage and would broaden the range of application to areas where labeled compounds either are not available, or are too expensive or where labeling would fundamentally alter the properties of the ligand. Such a label free method would be particularly useful in the early stages of drug discovery, where great numbers of compounds are screened against proteins.


Such a mass spectrometry probe, upon which an enzyme microarray has been fabricated, enables interrogation of enzymatic reactions and the effect compounds have thereon in a label-free manner by desorption and ionisation of reactants and products. The probe and methods are particularly useful in the drug discovery process, for example in hit series evaluation, lead optimisation, predictive toxicogenomics and metabolite profiling.


The probes and method could however be used as a diagnostic tool to both diagnose disease states and monitor disease progression.


SUMMARY OF THE INVENTION

According to a first aspect of the invention there is provided a method of determining the activity of an enzyme, or the effect a test compound has on the activity of the enzyme, using mass spectrometry comprising:

    • i) providing a probe carrying an immobilised enzyme;
    • ii) optionally introducing the test compound;
    • iii) introducing one or more reactants to the immobilised enzyme for a time, and in a form sufficient for a reaction to take place;
    • iv) drying the probe;
    • v) subjecting the probe to mass spectrometry; and
    • vi) determining the activity of the enzyme, or the effect the test compound had on the activity of the enzyme, by detecting the presence and/or absence of one or more products and/or the one or more reactants.


Preferably the mass spectrometry uses a MALDI mass spectrometer. However, since the principal mass spectrometry requirement for analysis is that the molecule be converted to gaseous ions, the skilled person will appreciate that numerous other mass spectrometry methods which enable this ionisation event can also be used, including without limitation: laser desorption-ionisation mass spectrometry, matrix-assisted laser desorption-ionisation (MALDI) mass spectrometry; desorption-ionisation on silicon (DIOS) mass spectrometry; electrospray ionisation mass spectrometry; and atmospheric pressure ionization (API) mass spectrometry. Clearly fourier transform mass spectrometry (FT/MS) methods such as fourier transform ion cyclotron resonance (FT-ICR) mass spectrometry can be used to enhance the mass accuracy of the various ionisation methods.


For example, in the case of electrospray ionisation methods, enzymes can be immobilised on individual nozzles of a multi-nozzle spraying probe (for example the NanoMate-100 nanoelectrospray probe sold by Advion), the reactions carried out by introducing one or more reactants into each nozzle, introducing the probe into the spectrometer and ionising the reactants and products by electrospray ionisation.


Whilst the method can be used to study any enzymatic reaction where one or more reactants are converted to one or more products and either the reactants and or the products can be discerned using e.g. MALDI mass spectrometry it is particularly suitable as a method for investigating kinases as all kinases use and/or generate a nucleotide tri phosphate (NTP) or a nucleotide di phosphate (NDP) e.g. adenine tri phosphate (ATP) or adenine di phosphate (ADP) which can be readily and distinguishably detected. The skilled person will understand that other nucleotide species such as guanine, uridine and cytosine may also be used, although adenine is preferred due to the fact it provides for a more sensitive assay as detection can be achieved at pico (10−12) Molar levels. Sensitivity is improved using MALDI mass spectrometry due to the enhancing effects of matrix.


In one embodiment step ii) is essential, and the effect the test compound has on the enzymatic activity is determined by comparison with the results obtained where the test compound is absent. The assay may be run on a single array, by running two or more assays in parallel, or by comparison to a standard. The test compound may be added pre, post or most preferably with the one or more reactants.


The method may be used to provide either a qualitive or quantitive result.


Preferably the method will determine the activity of one or more kinases or the effect a test compound has on the activity of one or more kinases by using MALDI mass spectrometry. Thus a kinase array for use in the method may comprise one or more kinases, for example, at least 10, through 25, 50, 75, 100, 200, 300 or more of the some 500 plus kinases of the kineome. These may be arranged on a microarray, each kinase being deposited at a discrete target area


For a kinase assay the one or more reactants may comprise a phosphate donor, a phosphate acceptor and a divalent cation. The phosphate donor may be a phosphorylated substrate and the phosphate acceptor may be a nucleotide di phosphate (NDP). The simplicity of the method resides in the fact that these reactants are common to all kinase reactions thus enabling a single set of conditions to be applied across a range of kinases. This means the assay is robust and enables it be used for high throughput screening.


Of course it is possible to use discrete as well as generic substrates and examples of kinases and their substrates are shown in Tables 1 and 2, annexed hereto.


In one embodiment the phosphate donor is a nucleotide tri phosphate (NTP) and the phosphate acceptor is a substrate to be phosphorylated. Preferably the divalent cation (M2+) is magnesium or manganese.


In another embodiment the product is a nucleotide tri phosphate or a nucleotide di phosphate, the presence of which is detected. Of course since a typical kinase reaction is reversible the reactants may be the products and vice versa.

    • Typical reaction:
      embedded image


Typically the nucleotide tri phosphate or nucleotide di phosphate are detected as [NTP] or [NDP] and/or as one or more adduct peaks thereof. The one or more adduct peaks are typically adduct peaks with a monovalent cat ion (M+) (e.g. Na, K, Li.) depending on the reagents/buffers used. The one or more adduct peaks may, for example, include [ATP M], [ATP M2], and [ATP M3] and/or [ADP M], [ADP M2], and [ADP M3].


An important factor in being able to achieve good detection is in the selection of a low salt buffer. Preferably the low salt buffer is a “semi volatile buffer” such as, ammonium bicarbonate buffer. Such buffers do not leave a residue on evaporation as they are converted into gases, which in the case of ammonium bicarbonate are ammonia, carbon dioxide and water. Alternatively, since the reaction mix need only be a “low salt” buffer at the point of vaporisation/ionisation it would be possible to use a buffer containing a higher concentration of a semi-volatile salt and then, after the reaction is finished, remove the semi-volatile buffer in vacuo (either in the mass spec vacuum chamber or in an external vacuum chamber). This however is more complex and less desirable.


A further and significant feature of the invention resides in the fact that in a kinase assay the detected products/reactants are small; typically less than 1000 daltons and consequently the mass spectrometry analysis can be conducted without having to overlay the probe with energy absorbing molecules (matrix). This simplifies and speeds up the procedure as well as saving costs. However, the addition of matrix increases sensitivity.


Where energy absorbing molecules are applied these should be applied to the probe in register with the immobilised enzyme.


The one or more reactants, and if present the test compound, are preferably introduced to the immobilised enzyme in a compartmentalised form, such as in the form of a droplet. Preferably the droplet has a volume of less than 1 microlitre.


Additionally it is preferred that the assay is conducted in a humid environment.


Of course, as well as kinases the method of the invention is applicable to other enzymes. Thus, it is possible to study enzyme reactions of immobilized proteins on protein arrays by mass spectrometry wherever the reactants and/or products are ionisable and where the enzymatic reaction leads to a mass change in the reactant and or product. This can be the case for Oxidoreductases, Transferases, Hydrolases, Lyases and Ligases.


Typical subclasses of enzymes from these groups of enzymes are listed in table 3 below:

TABLE 3SubclassNameEC1OxidoreductasesEC 1.1Acting on the CH—OH group of donorsEC 1.2Acting on the aldehyde or oxo group of donorsEC 1.3Acting on the CH—CH group of donorsEC 1.4Acting on the CH—NH2 group of donorsEC 1.5Acting on the CH—NH group of donorsEC 1.6Acting on NADH or NADPHEC 1.7Acting on other nitrogenous compounds as donorsEC 1.8Acting on a sulfur group of donorsEC 1.9Acting on a heme group of donorsEC 1.10Acting on diphenols and related substances as donorsEC 1.11Acting on a peroxide as acceptorEC 1.12Acting on hydrogen as donorEC 1.13Acting on single donors with incorporation of molecular oxygen (oxygenases)EC 1.14Acting on paired donors, with incorporation or reduction of molecular oxygenEC 1.15Acting on superoxide radicals as acceptorEC 1.16Oxidising metal ionsEC 1.17Acting on CH2 groupsEC 1.18Acting on iron-sulfur proteins as donorsEC 1.19Acting on reduced flavodoxin as donorEC 1.20Acting on phosphorus or arsenic in donorsEC 1.21Acting on X—H and Y—H to form an X—Y bondEC 1.97Other oxidoreductasesEC2TransferasesEC 2.1Transferring one-carbon groupsEC 2.2Transferring aldehyde or ketonic groupsEC 2.3AcyltransferasesEC 2.4GlycosyltransferasesEC 2.5Transferring alkyl or aryl groups, other than methyl groupsEC 2.6Transferring nitrogenous groupsEC 2.7Transferring phosphorus-containing groupsEC 2.8Transferring sulfur-containing groupsEC 2.9Transferring selenium-containing groupsEC3HydrolasesEC 3.1Acting on ester bondsEC 3.2GlycosylasesEC 3.3Acting on ether bondsEC 3.4Acting on peptide bonds (peptidases)EC 3.5Acting on carbon-nitrogen bonds, other than peptide bondsEC 3.6Acting on acid anhydridesEC 3.7Acting on carbon-carbon bondsEC 3.8Acting on halide bondsEC 3.9Acting on phosphorus-nitrogen bondsEC 3.10Acting on sulfur-nitrogen bondsEC 3.11Acting on carbon-phosphorus bondsEC 3.12Acting on sulfur-sulfur bondsEC 3.13Acting on carbon-sulfur bondsEC 4LyasesEC 4.1Carbon-carbon lyasesEC 4.2Carbon-oxygen lyasesEC 4.3Carbon-nitrogen lyasesEC 4.4Carbon-sulfur lyasesEC 4.5Carbon-halide lyasesEC 4.6Phosphorus-oxygen lyasesEC 4.99Other lyasesEC 6LigasesEC 6.1Forming carbon-oxygen bondsEC 6.2Forming carbon-sulfur bondsEC 6.3Forming carbon-nitrogen bondsEC 6.4Forming carbon-carbon bondsEC 6.5Forming phosphoric ester bonds


Alternatively the method can be used to monitor enzymatic reactions involving co-substrates (also reactants in the context of this application) including NAD, NADP, NADH, NADPH, ATP, GTP, UTP, CTP, UDP-glucose, UDP-glucosamine, UDP-galactose, pyridoxalphosphate, UDP-N-acetyl-D-glucosamine, GDP-D-mannose, dTDP-6-deoxy-L-mannose, GDP-6-deoxy-D-talose, UDP-N-acetylmuramate, S)-3-hydroxyacyl-CoA, S-adenosyl-L-methionine, acetyl-CoA, L-selenoseryl-tRNAMSec, (S)-3-hydroxy-3-methylglutaryl-CoA, 5,10-methylentetrahydrofolate, ascorbate, 2-oxoglutarate, glutathione, pyruvate and tetrahydropteridine.


This is particularly useful when the substrates or products are not ionisable or when the reaction does not cause a mass change, as is seen for Isomerases (for example phenylalanine racemase which is ATP-hydrolysing). Typical isomerases are listed in table 4.

TABLE 4EC6IsomerasesEC 5.1Racemases and epimerasesEC 5.2cis-trans-IsomerasesEC 5.3Intramolecular isomerasesEC 5.4Intramolecular transferases (mutases)EC 5.5Intramolecular lyasesEC 5.99Other isomerases


More specifically, the enzyme is drawn from one or more of the group or groups of those enzyme families that are common drug targets, such as protein kinases (including serine/threonine kinases and tyrosine kinases), proteases (including serine proteases, cysteine proteases, aspartyl proteases and metalloproteinases), carboxylases, esterases, phosphodiesterases, protein phosphatases (including tyrosine phosphatases), G-protein coupled receptors, ATP-dependent chaperones, cyclooxygenases, cytochrome P450s, sialidases, and short-chain dehydrogenases/reductases.


According to a further aspect of the present invention there is provided a probe for use with a mass spectrometer, comprising a support having an electroconductive target surface thereon characterised in that the target surface comprises an array having a plurality of enzymes immobilised thereon.


In a preferred embodiment the enzymes are selected from the groups of enzymes listed above. Particularly preferred are those enzyme families that are common drug targets, particularly though not exclusively kinases.


Preferably the array is a micro array.


The enzymes are preferably attached to the probe as fusion proteins, typically via a tag, such as, for example, biotin, or a sh ble protein.


Related aspects to the invention are described in full in a number of the applicant's earlier patent applications including WO 01/57198 and are thus not dealt with in depth herein, but as others are as yet unpublished, such as GB 0224872.2, further supporting and related details are given below:


Thus, the probes referred to herein include microarrays, as well as arrays in which the protein spots will be visible to the naked eye, and are adapted so that they may be interrogated by means of laser desorption/ionisation mass spectrometry, particularly, though not exclusively, matrix assisted laser desorption/ionisation (MALDI).


Additional aspects relevant to the invention include methods leading to the production of such a probe which can be interrogated by means of laser desorption/ionisation mass spectrometry, particularly matrix assisted laser desorption/ionisation (MALDI) and methods of analysing such a probe or protein microarray.


Thus, the development of a MALDI MS-compatible protein microarray which term includes enzyme microarrays was complex since existing methods of forming protein microarrays did not transfer readily to a MALDI target. There are a number of reasons why this was the case, including the specialised nature of the probe surfaces and the potential for salts present in reaction buffers to interfere with the detection method.


Procedures known in the art for MALDI typically require the co-crystallization of the aqueous analyte with acidic energy absorbing molecules, or ‘matrix’, to promote ionization of the analytes (Karas and Hillenkamp, 1988). The method of co-crystallizing analyte and matrix for MALDI, as known in the art, typically results in a heterogeneous crystallization process and yields discrete, spatially separated crystals that each contains differing amounts of matrix and analyte. As a consequence it is often observed that individual crystals contain insufficient analyte for analysis by MALDI. This in turn results in a requirement for the analyser to sample multiple (i.e. 10-100 or more) discrete locations within a given target area in order to obtain a good analyte signal; this is sometime referred to as “the search for the sweet spot”. This has previously prevented miniaturization since protein spots needed to be large. They were generally in the order of at least 0.5 mm2.


In order to generate MALDI MS-compatible protein microarrays, solutions for the aforementioned shortcomings of the prior art were required that enabled both miniaturization of the target areas and functional analysis of the arrayed proteins.


As defined herein a probe is a support which is capable of acting as a target in analysis by laser desorption/ionisation mass spectrometry, for example matrix assisted laser desorption/ionisation (MALDI). The probe carries the enzymes, e.g. kinases and the reactants (and optionally test compounds) are added. After a time sufficient for a reaction to take place, and products to be formed, the probes are dried and subjected to mass spectrometry. The reactants and or the products interact with the repeller lens of the ion-optic assembly found in laser desorption/ionisation time-of-flight (TOF) mass spectrometers of the art, such that the converted to gaseous ions which permits analysis. For example, the probes of the invention may be derived from targets for MALDI analysis as known in the art, which are treated such that a high affinity protein binding moiety e.g. streptavidin, avidin or neutravidin molecules are present on the probe surface which bind biotinylated enzymes for subsequent analysis. For example, conventional glass or gold MALDI targets may be used.


As defined herein a micro array is an array where the size of the discrete target areas i.e. the individual areas probed by a laser, is in the order of micrometers or less. Whilst at the upper end of the scale, around 1000 micrometers diameter, they may be visible to the naked eye at the lower end of the scale the discrete target areas will not be clearly distinguished by the naked eye.


The arrays will typically be arranged in matrices comprising several rows and columns. The number of discrete target areas will depend upon what is being screened though it is generally desirable to have a high density of these discrete areas on the probe surface as this will facilitate high through put screening. Typically a probe will comprise at least 10, more preferably at least 100, more preferably at least 1000 and as many as 10,000 or more target areas produced thereon. (Typically a probe surface will have an area of around 10,000 mm2—Bruker probe has an area of 10,292 mm2 although there is no requirement to use the whole of the probe and the microarray can be applied in one or more matrices thereon.) The actual density in a given matrices will depend upon the size of the discrete target area (which will typically be printed as a spot) and the spacing between adjacent spots. Thus the discrete target areas will typically be present at a density of greater than 1 discrete target areas per mm2 within any matrices.


The enzyme is the moiety about which the reaction occurs.


The term “enzyme” as used herein is used to include both whole enzymes and sub units or domains thereof


“Fusion protein” as used herein is used to refer to an enzyme, which has a tag, for example, a biotinylation consensus sequence or phleomycin/zeocin resistance binding protein attached thereto.


“Linker molecules” are molecules which function as their name suggests. They are molecules comprising functional groups which allow bridges to be formed between different molecules.


Another significant development enabling the “miniaturization” of an enzyme array formed on a MALDI target derives from the application of the Applicant's COVET technology described in WO 01/57198. Briefly, using this technology they are able to create from cDNA libraries expressed enzymes, which carry a “sequence tag” that can be used to capture the enzymes with a high affinity and in a specific orientation on the microarray surface. This firstly enables enzymes e.g. a kinase library to be stably immobilized such that leaching of enzymes from the surface is avoided and secondly the oriented immobilization of the fusion protein onto the surface ensure maximum biological activity.


Yet another significant aspect of the invention, when compared to current protein microarrays, is the provision of such a probe with an electro conductive surface. This surface which includes semi conductive surfaces is essential where the probe is to be subjected to MALDI MS analysis. Whilst the support could be made wholly of an electro conductive material (which term is used herein to include semi conducive materials) it is preferred to coat a rigid support, e.g. a glass, with an electro conductive material such as, for example, gold although any suitable metal, for example, silver, platinum, iridium, wolfram, copper, cobalt, nickel, and iron or mixtures thereof, or a semiconductor e.g. silicon oxide, graphite or germanium oxide could be used.


Where the probe or enzyme microarray is produced on e.g. a standard size microscope glass slide it can be mounted in an adapter, which carries it into a mass spectrometer. Such an adaptor is described in Applicant's co pending UK application no. 0216387.1.


A further significant development, and one which may be viewed independently of the specific applications described herein, has been in the way the Applicant has overcome the problems caused by non specific protein binding. The Applicant has overcome this particular problem by providing a layer resistant to non specific protein binding onto the probe surface. More particularly, the microarray surface is modified by the inclusion of a layer of molecules which repel proteins. These protein repellant molecules which include, for example, polyethylene glycol may be bound to the probe surface via a linker, such as, for example, a poly amino acid which readily binds to e.g. a glass or gold surface and whose amino or carboxyl side groups can be used to bind the protein repellant molecules such that they reach out from the probe surface. The skilled man will appreciate that other functionalized molecules could be used. Preferably the enzyme binding moieties are incorporated in a position where they extend out from the surface. Preferred enzyme binding moieties include e.g. biotin, biotin-neutravidin, and bleomycin, and these and other moieties can be incorporated into the layer either via these functional groups on the linker molecules and/or via functional groups on the protein repellant molecules. Typically the affinity capture moieties are incorporated in small proportions (typically less than 20%) relative to the protein repellant molecules.


In this way the Applicant has been able to introduce the enzyme capture moieties not only in a homogeneous, spatial defined arrangement but also in a manner which enables high affinity binding in a specific manner. The resulting surface combines selectivity for the capture of biological macromolecules on the probe with reduced non specific binding of the type commonly observed on underivatised glass or metal surfaces and additionally results in a homogeneous distribution and orientation of the captured biological macromolecules.


The component molecules responsible for repelling non specific proteins include molecules which are generally hydrophilic in nature. They include polymers, such as, for example, polyethylene glycol, dextran, polyurethane and polyacrylamide and self assembled monolayers (SAM). Preferably the polymers comprise one or more functional side groups via which the protein capturing moieties can be attached. In the case of polyethylene glycol the functional group is a hydroxyl group. The molecules responsible for repelling non specific proteins may be bound directly to the surface as in, for example the case of SAM's or they may be attached via a linker. Particularly preferred as linkers are poly amino acids such as, for example, poly L lysine, poly L aspartic acid, poly L glutamic acid or mixtures thereof.


These have amino or carboxy side chains via which the molecules responsible for repelling non specific proteins can be attached and which can additionally be used to attach the protein capturing moieties. Alternatively, or in addition, the protein capturing moieties can be attached via the component molecules responsible for repelling non specific proteins.



FIG. 1 illustrates the binding of such molecules and contrasts the defined orientation which can be achieved by this ordered coupling compared to that achieved using current antibody binding techniques which result in random coupling.


In a preferred embodiment the probe has as it's enzyme capture moieties either a biotin binder e.g. neutravidin, avidin or streptavidin or a bleomycin resistant protein binder e.g. bleomycin. The enzymes are bound to the probe to create a protein microarray by printing a plurality of bacterial, yeast, sf9 or mammalian cell lysates containing fusion proteins in which a high affinity tag e.g. biotin or zeocin resistant protein (ZRP) is expressed onto the capture surface. Proteins are derived from the expression of a cDNA library and each individual clone is tagged at the C-terminus and/or on the N-terminus with a consensus sequence, which will enable high affinity recognition of the enzyme even in the presence of the otherwise protein repellent molecules. Only the recombinant, tagged enzyme can recognise the capture surface and other proteins from the lysate can be washed away as they do not bind to the protein repellent surface and do not have a high affinity to the protein binding moieties present in the layer.


A further aspect of the present invention provides a method of producing an enzyme microarray for use with a mass spectrometer comprising providing a probe of the invention and depositing the enzyme in registration with the protein capturing moieties in the discrete target area.


Yet a further aspect of the present invention provides a method of analyzing a probe of the invention in which energy absorbing molecules are deposited in a manner which denatures and thus unbinds an enzyme from a protein capturing moiety leaving the denatured enzyme lying unbound on the surface.


The energy absorbing molecules form a homogenous layer of crystals in a discrete location in registration with the protein capturing moieties and captured enzyme.


The homogenous layer of crystals is substantially continuous such that individual crystals are not visible at a 100 fold magnification and there are no visible gaps. It also has a substantially uniform depth, such that there is no apparent variation in crystal size at a 100 fold magnification.


The energy absorbing molecules are deposited onto the surface in a non aqueous solvent and the non aqueous solvent is evaporated off. Preferably the non aqueous solvent is an organic solvent, such as, for example, acetone or butanone.


Preferably the non aqueous solvent includes a modifier which controls the rate of evaporation such that crystallization of the energy absorbing molecules occurs on the probe. Suitable modifiers include glycerol, polyethylene glycol and thioglycerol. Preferably the energy absorbing molecules are deposited in a mixture of from 80-99.9%, preferably 99% organic solvent e.g. acetone to 20-0.1%, preferably 1% of modifier e.g. glycerol (vol/vol) Typical energy absorbing molecules include crystals of α-cyano-4-hydroxy-cinnamic acid, sinapinic acid, gentisic acid, nifidine, succinic acid, 1,8,9,-anthracenitriol, 3-Indoleacrylic acid, 2-(hydroxyphenylazo) benzoe-acid, 4-nitroanilin and combinations thereof.


Preferably the energy absorbing molecules are deposited in registration with the protein and each protein spot is overlaid with a similar sized spot of the energy absorbing molecules.


In order to achieve a high density of individual samples on the microarray the energy absorbing molecules need to be arranged in microcrystals on the surface. The matrix forms a homogenous layer of flat crystals without significant gaps between them and can be deposited in very small quantities on the microarray.


In contrast to the prior art in which matrix and analyte are co crystallized in an aqueous solvent, the Applicant uses two distinct steps in which first the protein is deposited in an aqueous solvent and then the energy absorbing molecules are deposited such that they crystallise out from the non aqueous solvent on the probe. This has the advantage that the protein is deposited in its biological form. However, using a non aqueous solvent to deliver the energy absorbing molecules allows the formation of a homogenous layer of microcrystals.


This has two benefits. First the formation of a homogenous layer means it is not necessary to search for a sweet spot as the homogenous layer guarantees protein in the presence of energy absorbing molecules and secondly it results in more accurate measurement due to the even nature of the layer.




BRIEF DESCRIPTION OF THE DRAWING

The various aspects of the invention will now be described, by way of example only, with reference to the following figures and examples in which:



FIG. 1 shows the orientated binding of the enzymes to a probe



FIG. 2, shows the detection of ADP and ATP using mass spectrometry, and



FIG. 3 also shows creatine phosphate mediated ATP synthesis on a surface




DETAILED DESCRIPTION
EXAMPLE 1

Referring to FIG. 2, ATP was enzymatically synthesized from the reaction of ADP, creatine phosphate and creatine kinase (also known as creatine phosphokinase) in 25 mM ammonium bicarbonate at pH 7.4. [ADP] was detected at 427.6 dalton and [ADP+Na] at 449.6 dalton. The products of the creatine phosphate kinase reaction were detected at 507.6, 529.6, 551.6 and 573.8, which fit well with the expected molecular weight of [ATP] and three ATP sodium adducts [ATP Na]. [ATP Na2] and [ATP Na3].


Control reactions in which either one of the substrates ADP or creatine phosphate or the enzyme creatine phosphate kinase was omitted didn't show ATP peaks.


EXAMPLE 2

Referring to FIG. 3 the example demonstrates the biotinylation, capture, and desalting of creatine kinase from rabbit muscle on a PEG-PLL-Biotin-Neutravidin coated probe for analysis by MALDI mass spectrometry and the enzymatic activity of the immobilized kinase using MALDI mass spectrometry.


Material:


Creatine kinase from rabbit muscle ATP: creatine N-phosphotransferase ADP, creatine phosphate, 1 mM Tris HCl pH 7.5, 1 mM MgCl2, gold coated glass slide, PEG-PLL-biotin, Neutravidin


Solutions:


Washing buffer: 1 mM Tris-HCl pH 7.5 with 0.1% Triton X-100; desalting buffer: 1 mM Tris-HCl pH 7.5.


Affinity Capture Polymer Synthesis


The poly-L-lysine PEG-biotin (PEG-PLL-biotin) was synthesized according to the protocol of Ruiz Taylor6. Briefly, 100 mg poly-L-lysine (average size 17-30 kDa; Sigma, Dorset, UK) was reacted with 109 mg mPEG-SPA and 1.1 mg biotinPEG-CO-NHS (Shearwater Corporation, Huntsville, Ala.) in 1 ml 100 mM sodium carbonate buffer pH 9 for a period of 30 minutes. The reaction was terminated by dialysis in 1 mM Tris-HCl pH 7.5 overnight. The product from this reaction was called PEG-PLL-biotin (1% PEG derivatives contain a biotin headgroup).


Biotinylation of Creatine Kinase


Creatine kinase (100 mg) was dissolved in 1 ml 1 mM Tris HCl pH 7.5 and 1 mg of EZ link biotin PEO amine and 1 mg ethylene diamine carbodiimide were reacted for 20 minutes at room temperature.


Affinity Capture Surface Preparation


Protein microarray probes were thoroughly cleaned before use with sequential washing steps in acetone, acetonitrile, double distilled water and dried under nitrogen. Freshly prepared affinity capture polymer PEG-PLL-Biotin was then pipetted on the surface of the probe and was then evenly distributed on the surface by covering it with Nesco film (Azwell Inc., Osaka, Japan). After 30 min the probe was washed in 1 mM Tris-HCl pH 7.5, dried under nitrogen and then coated with 0.5 mg/ml neutravidin for one hour at RT in a humid chamber. The probe was then rinsed with washing buffer, washed twice with desalting buffer and dried under nitrogen. The surface was now ready to be used as a highly specific affinity capture device for biotinylated macromolecules.


Capture and Detection of Biotinylated Proteins on the Probe Surface


A PLL-PEG-biotin neutravidin surface on a MALDI target was overlaid with 50 ng of biotinylated creatine kinase (Roche, Mannheim, Ger) The biotinylated protein was captured for a period of 2 hours on the MALDI target in a humid chamber to prevent drying, washed twice with washing buffer followed by two washes with desalting buffer, surface was dried under nitrogen and overlaid with 300 nl of a saturated solution of cyano-4-hydroxycinnamic acid in acetone.


Monitoring the Kinase Activity of the Immobilized Creatine Kinase on the Protein Array


The array with the immobilized creatine kinase is washed with 100 ml 1 mM Tris-HCl pH 7.5 and is then overlaid with a mixture 1 mM creatine phosphate, 1 mM ADP, 1 mM MgC12 and 25 mM ammoniumbicarbonate buffer in a volume less than 1 microlitre. The enzyme and the substrates are incubated in a humid chamber at 37° C. for a period of 30 minutes. Reactions which omitted either ADP, creatine phosphate or the kinase were run in parallel as specificity controls.


Results



FIG. 3 shows the detection of ADP and ATP. ATP was enzymatically synthesized from the reaction of ADP, creatine phosphate and creatine kinase in 25 mM ammonium bicarbonate at pH 7.4. [ADP] was detected at 427.6 dalton and [ADP+Na] 449.6 dalton. The products of the creatine kinase reaction were detected at 507.6, 529.6, 551.6 and 573.8, which fits well with the expected molecular weight of [ATP] and three ATP sodium adducts [ATP Na]. [ATP Na2] and [ATP Na3].


Control reactions in which either one of the substrates ADP or creatine phosphate or the enzyme creatine kinase was omitted didn't show ATP peaks.


1 Gygi, S. P., Rist, B., Gerber, S. A., Turecek, F. Gelb, M. H. and Aebersold, R, Nat Biotechnol. 1999;17,994-999


2 Gavin A C, Bosche M, Krause R, Grandi P, Marzioch M, Bauer A, Schultz J, Rick J M, Michon A M, Cruciat C M, Remor M, Hofert C, Schelder M, Brajenovic M, Ruffner H, Merino A, Klein K, Hudak M, Dickson D, Rudi T, Gnau V, Bauch A, Bastuck S, Huhse B, Leutwein C, Heurtier M A, Copley R R, Edehnann A, Querfurth E, Rybin V, Drewes G, Raida M, Bouwmeester T, Bork P, Seraphin B, Kuster B, Neubauer G, Superti-Furga G.. Nature 2002; 415(6868),141-147.


3 MacBeath, G., and Schreiber, S. F. Science 2000; 289, 1760-1763


4 Zhu H, Klemic J F, Chang S, Bertone P, Casamayor A, Klemic K G, Smith D, Gerstein M, Reed M A, Snyder M. Nat Genet. 2000; 26(3):283-9


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6 Natsume, T., Nakayama, H., Isobe, T. Trends Biotechnolo 2001; 10, 28-33

TABLE 1Swiss ProtAccessionnumberProtein nameP43403TYROSINE-PROTEIN KINASE ZAP-70 (70 KDA ZETA-ASSOCIATED PROTEIN)(SYK-RELATED TYROSINE KINASE)P07947PROTO-ONCOGENE TYROSINE-PROTEIN KINASE YES (P61-YES) (C-YES)O60285PROBABLE SERINE/THREONINE-PROTEIN KINASE KIAA0537P30291WEE1-LIKE PROTEIN KINASE (WEE1HU)P35916VASCULAR ENDOTHELIAL GROWTH FACTOR RECEPTOR 3 PRECURSOR(VEGFR-3) (TYROSINE-PROTEIN KINASE RECEPTOR FLT4)P17948VASCULAR ENDOTHELIAL GROWTH FACTOR RECEPTOR 1 PRECURSOR(VEGFR-1) (TYROSINE-PROTEIN KINASE RECEPTOR FLT) (FLT-1) (TYROSINE-PROTEIN KINASE FRT)O75385SERINE/THREONINE-PROTEIN KINASE ULK1 (UNC-51-LIKE KINASE 1)P30530TYROSINE-PROTEIN KINASE RECEPTOR UFO PRECURSOR (AXL ONCOGENE)Q06418TYROSINE-PROTEIN KINASE RECEPTOR TYRO3 PRECURSOR (TYROSINE-PROTEIN KINASE RSE) (TYROSINE-PROTEIN KINASE SKY) (TYROSINE-PROTEIN KINASE DTK)P29597NON-RECEPTOR TYROSINE-PROTEIN KINASE TYK2O43914TYRO PROTEIN TYROSINE KINASE-BINDING PROTEIN PRECURSOR (DNAX-ACTIVATION PROTEIN 12)P42681TYROSINE-PROTEIN KINASE TXKP33981DUAL SPECIFICITY PROTEIN KINASE TTK (PYT)P04629HIGH AFFINITY NERVE GROWTH FACTOR RECEPTOR PRECURSOR (TRK1TRANSFORMING TYROSINE KINASE PROTEIN) (P140-TRKA) (TRK-A)Q02763ANGIOPOIETIN 1 RECEPTOR PRECURSOR (TYROSINE-PROTEIN KINASERECEPTOR TIE-2) (TYROSINE-PROTEIN KINASE RECEPTOR TEK) (P140 TEK)(TUNICA INTERNA ENDOTHELIAL CELL KINASE)P35590TYROSINE-PROTEIN KINASE RECEPTOR TIE-1 PRECURSORP36897TGF-BETA RECEPTOR TYPE I PRECURSOR (TGFR-1) (TGF-BETA TYPE IRECEPTOR) (SERINE/THREONINE-PROTEIN KINASE RECEPTOR R4) (SKR4)(ACTIVIN RECEPTOR-LIKE KINASE 5) (ALK-5)Q15569TESTIS-SPECIFIC PROTEIN KINASE 1P42680TYROSINE-PROTEIN KINASE TECO76039SERINE/THREONINE-PROTEIN KINASE 9Q13043SERINE/THREONINE PROTEIN KINASE 4 (STE20-LIKE KINASE MST1) (MST-1)(MAMMALIAN STE20-LIKE PROTEIN KINASE 1) (SERINE/THREONINE PROTEINKINASE KRS-2)Q13188SERINE/THREONINE PROTEIN KINASE 3 (STE20-LIKE KINASE MST2) (MST-2)(MAMMALIAN STE20-LIKE PROTEIN KINASE 2) (SERINE/THREONINE PROTEINKINASE KRS-1)P51957SERINE/THREONINE PROTEIN KINASE 2 (SERINE/THREONINE-PROTEINKINASE NRK2)O00506SERINE/THREONINE PROTEIN KINASE 25 (STERILE 20/OXIDANT STRESS-RESPONSE KINASE 1) (STE20/OXIDANT STRESS RESPONSE KINASE-1) (SOK-1) (STE20-LIKE KINASE)Q9Y6E0SERINE/THREONINE PROTEIN KINASE 24 (STE20-LIKE KINASE MST3) (MST-3)(MAMMALIAN STE20-LIKE PROTEIN KINASE 3)Q9UPE1SERINE/THREONINE PROTEIN KINASE 23 (MUSCLE-SPECIFIC SERINE KINASE1) (MSSK-1)O75716SERINE/THREONINE PROTEIN KINASE 16 (PROTEIN KINASE PKL12)(MYRISTOYLATED AND PALMITOYLATED SERINE-THREONINE KINASE) (MPSK)(TGF-BETA STIMULATED FACTOR 1) (TSF-1) (HPSK)Q15831SERINE/THREONINE-PROTEIN KINASE 11 (SERINE/THREONINE-PROTEINKINASE LKB1)O94804SERINE/THREONINE-PROTEIN KINASE 10 (LYMPHOCYTE-ORIENTED KINASE)P12931PROTO-ONCOGENE TYROSINE-PROTEIN KINASE SRC (P60-SRC) (C-SRC)Q99611SELENIDE, WATER DIKINASE 2 (SELENOPHOSPHATE SYNTHETASE 2)(SELENIUM DONOR PROTEIN 2)P49903SELENIDE, WATER DIKINASE 1 (SELENOPHOSPHATE SYNTHETASE 1)(SELENIUM DONOR PROTEIN 1)Q9UEW8STE20/SPS1-RELATED PROLINE-ALANINE RICH PROTEIN KINASE (STE-20RELATED KINASE) (DCHT)Q9NYY3SERINE/THREONINE-PROTEIN KINASE SNK (SERUM INDUCIBLE KINASE)P57059PROBABLE SERINE/THREONINE PROTEIN KINASE SNF1LKQ9BPZ7STRESS-ACTIVATED MAP KINASE INTERACTING PROTEIN 1 (SAPKINTERACTING PROTEIN 1) (PUTATIVE RAS INHIBITOR JC310)O00141SERINE/THREONINE-PROTEIN KINASE SGK (SERUM/GLUCOCORTICOID-REGULATED KINASE)O94768SERINE/THREONINE KINASE 17B (DAP KINASE-RELATED APOPTOSIS-INDUCING PROTEIN KINASE 2)Q9UEE5SERINE/THREONINE KINASE 17A (DAP KINASE-RELATED APOPTOSIS-INDUCING PROTEIN KINASE 1)P34925TYROSINE-PROTEIN KINASE RYK PRECURSORQ01974TYROSINE-PROTEIN KINASE TRANSMEMBRANE RECEPTOR ROR2PRECURSOR (NEUROTROPHIC TYROSINE KINASE, RECEPTOR-RELATED 2)Q13516PROTEIN KINASE C-BINDING PROTEIN RACK17 (PROTEIN KINASE C BINDINGPROTEIN 2)Q13546SERINE/THREONINE PROTEIN KINASE RIP (CELL DEATH PROTEIN RIP)(RECEPTOR INTERACTING PROTEIN)Q13308TYROSINE-PROTEIN KINASE-LIKE 7 PRECURSOR (COLON CARCINOMAKINASE-4) (CCK-4)Q13882TYROSINE-PROTEIN KINASE 6 (BREAST TUMOR KINASE) (TYROSINE-PROTEINKINASE BRK)P78527DNA-DEPENDENT PROTEIN KINASE CATALYTIC SUBUNIT (DNA-PKCS)(DNPK1)Q13523SERINE/THREONINE-PROTEIN KINASE PRP4 HOMOLOGP53350SERINE/THREONINE-PROTEIN KINASE PLK (PLK-1) (SERINE-THREONINEPROTEIN KINASE 13) (STPK13)P51817PROTEIN KINASE PKX1Q16513PROTEIN KINASE C-LIKE 2 (PROTEIN-KINASE C-RELATED KINASE 2)Q16512PROTEIN KINASE C-LIKE 1 (PROTEIN-KINASE C-RELATED KINASE 1) (PROTEINKINASE C-LIKE PKN) (SERINE-THREONINE PROTEIN KINASE N)P00558PHOSPHOGLYCERATE KINASE 1 (PRIMER RECOGNITION PROTEIN 2) (PRP 2)Q9P286SERINE/THREONINE-PROTEIN KINASE PAK 5 (P21-ACTIVATED KINASE 5)(PAK-5)O75914SERINE/THREONINE-PROTEIN KINASE PAK 3 (P21-ACTIVATED KINASE 3)(PAK-3) (BETA-PAK)Q13177SERINE/THREONINE-PROTEIN KINASE PAK 2 (P21-ACTIVATED KINASE 2)(PAK-2) (PAK65) (GAMMA-PAK) (S6/H4 KINASE)Q13153SERINE/THREONINE-PROTEIN KINASE PAK 1 (P21-ACTIVATED KINASE 1)(PAK-1) (P65-PAK) (ALPHA-PAK)O4342252 KDA REPRESSOR OF THE INHIBITOR OF THE PROTEIN KINASE (P58IPK-INTERACTING PROTEIN) (58 KDA INTERFERON-INDUCED PROTEIN KINASE-INTERACTING PROTEIN) (P52RIPK) (DEATH ASSOCIATED PROTEIN 4)Q99435PROTEIN KINASE C-BINDING PROTEIN NELL2 PRECURSOR (NEL-LIKEPROTEIN 2) (NEL-RELATED PROTEIN 2)Q92832PROTEIN KINASE C-BINDING PROTEIN NELL1 PRECURSOR (NEL-LIKEPROTEIN 1) (NEL-RELATED PROTEIN 1)P51956SERINE/THREONINE-PROTEIN KINASE NEK3 (NIMA-RELATED PROTEINKINASE 3) (HSPK 36)P51955SERINE/THREONINE-PROTEIN KINASE NEK2 (NIMA-RELATED PROTEINKINASE 2) (NIMA-LIKE PROTEIN KINASE 1) (HSPK 21)P15531NUCLEOSIDE DIPHOSPHATE KINASE A (NDK A) (NDP KINASE A) (TUMORMETASTATIC PROCESS-ASSOCIATED PROTEIN) (METASTASIS INHIBITIONFACTOR NM23) (NM23-H1)Q9ULX6NEIGHBOR OF A-KINASE ANCHORING PROTEIN 95 (HOMOLOGOUS TOAKAP95 PROTEIN) (HA95) (HELICASE A-BINDING PROTEIN 95) (HAP95)Q13163DUAL SPECIFICITY MITOGEN-ACTIVATED PROTEIN KINASE KINASE 5 (MAPKINASE KINASE 5) (MAPKK 5) (MAPK/ERK KINASE 5)P45985DUAL SPECIFICITY MITOGEN-ACTIVATED PROTEIN KINASE KINASE 4 (MAPKINASE KINASE 4) (JNK ACTIVATING KINASE 1) (C-JUN N-TERMINAL KINASEKINASE 1) (JNKK) (SAPK/ERK KINASE 1) (SEK1)P46734DUAL SPECIFICITY MITOGEN-ACTIVATED PROTEIN KINASE KINASE 3 (MAPKINASE KINASE 3) (MAPKK 3) (MAPK/ERK KINASE 3)P36507DUAL SPECIFICITY MITOGEN-ACTIVATED PROTEIN KINASE KINASE 2 (MAPKINASE KINASE 2) (MAPKK 2) (ERK ACTIVATOR KINASE 2) (MAPK/ERK KINASE2) (MEK2)Q02750DUAL SPECIFICITY MITOGEN-ACTIVATED PROTEIN KINASE KINASE 1 (MAPKINASE KINASE 1) (MAPKK 1) (ERK ACTIVATOR KINASE 1) (MAPK/ERK KINASE1) (MEK1)P49137MAP KINASE-ACTIVATED PROTEIN KINASE 2 (MAPK-ACTIVATED PROTEINKINASE 2) (MAPKAP KINASE 2) (MAPKAPK-2)Q16539MITOGEN-ACTIVATED PROTEIN KINASE 14 (MITOGEN-ACTIVATED PROTEINKINASE P38) (MAP KINASE P38) (CYTOKINE SUPPRESSIVE ANTI-INFLAMMATORY DRUG BINDING PROTEIN) (CSAID BINDING PROTEIN) (CSBP)(MAX-INTERACTING PROTEIN 2) (MAP KINASE MXI2)P53778MITOGEN-ACTIVATED PROTEIN KINASE 12 (EXTRACELLULAR SIGNAL-REGULATED KINASE 6) (ERK-6) (ERK5) (STRESS-ACTIVATED PROTEINKINASE-3) (MITOGEN-ACTIVATED PROTEIN KINASE P38 GAMMA) (MAP KINASEP38 GAMMA)Q15759MITOGEN-ACTIVATED PROTEIN KINASE 11 (MITOGEN-ACTIVATED PROTEINKINASE P38 BETA) (MAP KINASE P38 BETA) (P38B) (P38-2) (STRESS-ACTIVATED PROTEIN KINASE-2)P53779MITOGEN-ACTIVATED PROTEIN KINASE 10 (STRESS-ACTIVATED PROTEINKINASE JNK3) (C-JUN N-TERMINAL KINASE 3) (MAP KINASE P49 3F12)P45984MITOGEN-ACTIVATED PROTEIN KINASE 9 (STRESS-ACTIVATED PROTEINKINASE JNK2) (C-JUN N-TERMINAL KINASE 2) (JNK-55)P45983MITOGEN-ACTIVATED PROTEIN KINASE 8 (STRESS-ACTIVATED PROTEINKINASE JNK1) (C-JUN N-TERMINAL KINASE 1) (JNK-46)Q13164MITOGEN-ACTIVATED PROTEIN KINASE 7 (EXTRACELLULAR SIGNAL-REGULATED KINASE 5) (ERK-5) (ERK4) (BMK1 KINASE)Q16659MITOGEN-ACTIVATED PROTEIN KINASE 6 (EXTRACELLULAR SIGNAL-REGULATED KINASE 3) (ERK-3) (MAP KINASE ISOFORM P97) (P97-MAPK)P31152MITOGEN-ACTIVATED PROTEIN KINASE 4 (EXTRACELLULAR SIGNAL-REGULATED KINASE 4) (ERK-4) (MAP KINASE ISOFORM P63) (P63-MAPK)P27361MITOGEN-ACTIVATED PROTEIN KINASE 3 (EXTRACELLULAR SIGNAL-REGULATED KINASE 1) (ERK-1) (INSULIN-STIMULATED MAP2 KINASE) (MAPKINASE 1) (MAPK 1) (P44-ERK1) (ERT2) (P44-MAPK) (MICROTUBULE-ASSOCIATED PROTEIN-2 KINASE)P28482MITOGEN-ACTIVATED PROTEIN KINASE 1 (EXTRACELLULAR SIGNAL-REGULATED KINASE 2) (ERK-2) (MITOGEN-ACTIVATED PROTEIN KINASE 2)(MAP KINASE 2) (MAPK 2) (P42-MAPK) (ERT1)Q12866PROTO-ONCOGENE TYROSINE-PROTEIN KINASE MER PRECURSOR (C-MER)(RECEPTOR TYROSINE KINASE MERTK)P42679MEGAKARYOCYTE-ASSOCIATED TYROSINE-PROTEIN KINASE (TYROSINE-PROTEIN KINASE CTK) (PROTEIN KINASE HYL) (HEMATOPOIETICCONSENSUS TYROSINE-LACKING KINASE)P20794SERINE/THREONINE-PROTEIN KINASE MAK (MALE GERM CELL-ASSOCIATEDKINASE)P29966MYRISTOYLATED ALANINE-RICH C-KINASE SUBSTRATE (MARCKS) (PROTEINKINASE C SUBSTRATE, 80 KDA PROTEIN, LIGHT CHAIN) (PKCSL) (80K-LPROTEIN)Q99558MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE 14 (NF-KAPPA BETA-INDUCING KINASE) (SERINE/THREONINE PROTEIN KINASE NIK) (HSNIK)Q02779MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE 10 (MIXED LINEAGEKINASE 2) (PROTEIN KINASE MST)P80192MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE 9 (MIXED LINEAGEKINASE 1)P41279MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE 9 (COT PROTO-ONCOGENE SERINE/THREONINE-PROTEIN KINASE) (C-COT) (CANCER OSAKATHYROID ONCOGENE)O43318MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE 7 (TRANSFORMINGGROWTH FACTOR-BETA-ACTIVATED KINASE 1) (TGF-BETA-ACTIVATEDKINASE 1)O95382MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE 6Q99683MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE 5 (MAPK/ERK KINASEKINASE 5) (MEK KINASE 5) (MEKK 5) (APOPTOSIS SIGNAL-REGULATINGKINASE 1) (ASK-1)Q9Y6R4MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE 4 (MAPK/ERK KINASEKINASE 4) (MEK KINASE 4) (MEKK 4) (MAP THREE KINASE 1)Q99759MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE 3 (MAPK/ERK KINASEKINASE 3) (MEK KINASE 3) (MEKK 3)Q9Y2U5MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE 2 (MAPK/ERK KINASEKINASE 2) (MEK KINASE 2) (MEKK 2)Q13233MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE 1 (MAPK/ERK KINASEKINASE 1) (MEK KINASE 1) (MEKK 1)P07948TYROSINE-PROTEIN KINASE LYNP06239PROTO-ONCOGENE TYROSINE-PROTEIN KINASE LCK (P56-LCK) (LSK) (TCELL-SPECIFIC PROTEIN-TYROSINE KINASE)P43405TYROSINE-PROTEIN KINASE SYK (SPLEEN TYROSINE KINASE)P08922PROTO-ONCOGENE TYROSINE-PROTEIN KINASE ROS PRECURSORP04049RAF PROTO-ONCOGENE SERINE/THREONINE-PROTEIN KINASE (RAF-1) (C-RAF)P31749RAC-ALPHA SERINE/THREONINE KINASE (RAC-PK-ALPHA) (PROTEIN KINASEB) (PKB) (C-AKT)P15056B-RAF PROTO-ONCOGENE SERINE/THREONINE-PROTEIN KINASE (P94) (V-RAF MURINE SARCOMA VIRAL ONCOGENE HOMOLOG B1)P10398A-RAF PROTO-ONCOGENE SERINE/THREONINE-PROTEIN KINASE(ONCOGENE PKS2)P14618PYRUVATE KINASE, M1 ISOZYME (PYRUVATE KINASE MUSCLE ISOZYME)(CYTOSOLIC THYROID HORMONE-BINDING PROTEIN) (CTHBP) (THBP1)Q07002SERINE/THREONINE PROTEIN KINASE PCTAIRE-3Q00537SERINE/THREONINE-PROTEIN KINASE PCTAIRE-2P11801PUTATIVE SERINE/THREONINE-PROTEIN KINASE H1 (PSK-H1)P11800PUTATIVE SERINE/THREONINE-PROTEIN KINASE PSK-C3P07557PKS PROTO-ONCOGENE SERINE/THREONINE-PROTEIN KINASE (ONCOGENEPKS1)Q05513PROTEIN KINASE C, ZETA TYPE (NPKC-ZETA)Q04759PROTEIN KINASE C, THETA TYPE (NPKC-THETA)O94806PROTEIN KINASE C, NU TYPE (NPKC-NU) (PROTEIN KINASE EPK2)Q15139PROTEIN KINASE C, MU TYPE (NPKC-MU)P24723PROTEIN KINASE C, ETA TYPE (NPKC-ETA) (PKC-L)P41743PROTEIN KINASE C, IOTA TYPE (NPKC-IOTA)P05129PROTEIN KINASE C, GAMMA TYPE (PKC-GAMMA)Q02156PROTEIN KINASE C, EPSILON TYPE (NPKC-EPSILON)Q05655PROTEIN KINASE C, DELTA TYPE (NPKC-DELTA)P17252PROTEIN KINASE C, ALPHA TYPE (PKC-ALPHA)P05127PROTEIN KINASE C, BETA-II TYPE (PKC-BETA-2)P05771PROTEIN KINASE C, BETA-I TYPE (PKC-BETA-1)P27448PUTATIVE SERINE/THREONINE-PROTEIN KINASE P78P19525INTERFERON-INDUCED, DOUBLE-STRANDED RNA-ACTIVATED PROTEINKINASE (INTERFERON-INDUCIBLE RNA-DEPENDENT PROTEIN KINASE) (P68KINASE) (P1/EIF-2A PROTEIN KINASE)P21127GALACTOSYLTRANSFERASE ASSOCIATED PROTEIN KINASE P58/GTA (CELLDIVISION CYCLE 2-LIKE 1) (CLK-1) (P58 CLK-1)P00540PROTO-ONCOGENE SERINE/THREONINE-PROTEIN KINASE MOS (C-MOS)Q15746MYOSIN LIGHT CHAIN KINASE, SMOOTH MUSCLE AND NON-MUSCLEISOZYMES (MLCK) [CONTAINS: TELOKIN (KINASE RELATED PROTEIN) (KRP)]P29376LEUKOCYTE TYROSINE KINASE RECEPTOR PRECURSOR (PROTEINTYROSINE KINASE-1)P10721MAST/STEM CELL GROWTH FACTOR RECEPTOR PRECURSOR (SCFR)(PROTO-ONCOGENE TYROSINE-PROTEIN KINASE KIT) (C-KIT) (CD117ANTIGEN)Q00532SERINE/THREONINE-PROTEIN KINASE KKIALRE (CYCLIN-DEPENDENTKINASE-LIKE 1)P37023SERINE/THREONINE-PROTEIN KINASE RECEPTOR R3 PRECURSOR (SKR3)(ACTIVIN RECEPTOR-LIKE KINASE 1) (ALK-1) (TGF-B SUPERFAMILYRECEPTOR TYPE I) (TSR-I)O75838KINASE INTERACTING PROTEIN 2 (KIP 2)Q99828DNA-PKCS INTERACTING PROTEIN (KINASE INTERACTING PROTEIN) (KIP)(CALCIUM AND INTEGRIN-BINDING PROTEIN) (CIB) (SNK INTERACTINGPROTEIN 2-28) (SIP2-28)P14619CGMP-DEPENDENT PROTEIN KINASE 1, BETA ISOZYME (CGK 1 BETA) (CGKI-BETA)Q13976CGMP-DEPENDENT PROTEIN KINASE 1, ALPHA ISOZYME (CGK 1 ALPHA)(CGKI-ALPHA)Q13237CGMP-DEPENDENT PROTEIN KINASE 2 (CGK 2) (CGKII) (TYPE II CGMP-DEPENDENT PROTEIN KINASE)Q13555CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE TYPE II GAMMA CHAIN(CAM-KINASE II GAMMA CHAIN) (CAMK-II, GAMMA SUBUNIT)Q13557CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE TYPE II DELTA CHAIN(CAM-KINASE II DELTA CHAIN) (CAMK-II, DELTA SUBUNIT)Q13554CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE TYPE II BETA CHAIN(CAM-KINASE II BETA CHAIN) (CAMK-II, BETA SUBUNIT)Q16566CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE TYPE IV CATALYTICCHAIN (CAM KINASE-GR) (CAMK IV) [CONTAINS: CALSPERMIN]Q14012CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE TYPE I (CAM KINASE I)P22612CAMP-DEPENDENT PROTEIN KINASE, GAMMA-CATALYTIC SUBUNIT (PKA C-GAMMA)P22694CAMP-DEPENDENT PROTEIN KINASE, BETA-CATALYTIC SUBUNIT (PKA C-BETA)P17612CAMP-DEPENDENT PROTEIN KINASE, ALPHA-CATALYTIC SUBUNIT (PKA C-ALPHA)P31323CAMP-DEPENDENT PROTEIN KINASE TYPE II-BETA REGULATORY CHAINP13861CAMP-DEPENDENT PROTEIN KINASE TYPE II-ALPHA REGULATORY CHAINP31321CAMP-DEPENDENT PROTEIN KINASE TYPE I-BETA REGULATORY CHAINP10644CAMP-DEPENDENT PROTEIN KINASE TYPE I-ALPHA REGULATORY CHAIN(TISSUE-SPECIFIC EXTINGUISHER-1) (TSE1)Q9UBS0RIBOSOMAL PROTEIN S6 KINASE BETA 2 (S6K-BETA 2) (70 KDA RIBOSOMALPROTEIN S6 KINASE 2) (P70-S6KB) (P70 RIBOSOMAL S6 KINASE BETA) (P70S6KBETA) (S6K2) (S6 KINASE-RELATED KINASE) (SRK) (SERINE/THREONINE-PROTEIN KINASE 14 BETA)P23443RIBOSOMAL PROTEIN S6 KINASE (S6K) (P70-S6K)Q9UK32RIBOSOMAL PROTEIN S6 KINASE ALPHA 6 (S6K-ALPHA 6) (90 KDARIBOSOMAL PROTEIN S6 KINASE 6) (P90-RSK 6) (RIBOSOMAL S6 KINASE 4)(RSK-4) (PP90RSK4)P51812RIBOSOMAL PROTEIN S6 KINASE ALPHA 3 (S6K-ALPHA 3) (90 KDARIBOSOMAL PROTEIN S6 KINASE 3) (P90-RSK 3) (RIBOSOMAL S6 KINASE 2)(RSK-2) (PP90RSK2) (INSULIN-STIMULATED PROTEIN KINASE 1) (ISPK-1)Q15349RIBOSOMAL PROTEIN S6 KINASE ALPHA 2 (S6K-ALPHA 2) (90 KDARIBOSOMAL PROTEIN S6 KINASE 2) (P90-RSK 2) (RIBOSOMAL S6 KINASE 3)(RSK-3) (PP90RSK3)Q15418RIBOSOMAL PROTEIN S6 KINASE ALPHA 1 (S6K-ALPHA 1) (90 KDARIBOSOMAL PROTEIN S6 KINASE 1) (P90-RSK 1) (RIBOSOMAL S6 KINASE 1)(RSK-1) (PP90RSK1)P52333TYROSINE-PROTEIN KINASE JAK3 (JANUS KINASE 3) (JAK-3) (LEUKOCYTEJANUS KINASE) (L-JAK)P23458TYROSINE-PROTEIN KINASE JAK1 (JANUS KINASE 1) (JAK-1)Q08881TYROSINE-PROTEIN KINASE ITK/TSK (T-CELL-SPECIFIC KINASE) (TYROSINE-PROTEIN KINASE LYK) (KINASE EMT)Q9Y2B9CAMP-DEPENDENT PROTEIN KINASE INHIBITOR, GAMMA FORM (PKI-GAMMA)P04541CAMP-DEPENDENT PROTEIN KINASE INHIBITOR, MUSCLE/BRAIN FORM (PKI-ALPHA)P57043INTEGRIN-LINKED PROTEIN KINASE 2 (ILK-2)Q13418INTEGRIN-LINKED PROTEIN KINASE 1 (ILK-1) (59 KDA SERINE/THREONINEPROTEIN KINASE) (P59ILK)O95163IKAPPAB KINASE COMPLEX-ASSOCIATED PROTEIN (IKK COMPLEX-ASSOCIATED PROTEIN) (P150)P57058HORMONALLY UPREGULATED NEU TUMOR-ASSOCIATED KINASE(SERINE/THREONINE PROTEIN KINASE MAK-V) (B19)Q9UJY1SMALL STRESS PROTEIN-LIKE PROTEIN HSP22 (E2IG1) (PROTEIN KINASEH11)Q9H2X6HOMEODOMAIN-INTERACTING PROTEIN KINASE 2P08631TYROSINE-PROTEIN KINASE HCK (P59-HCK AND P60-HCK) (HEMOPOIETICCELL KINASE)P43250G PROTEIN-COUPLED RECEPTOR KINASE GRK6P34947G PROTEIN-COUPLED RECEPTOR KINASE GRK5P32298G PROTEIN-COUPLED RECEPTOR KINASE GRK4 (ITI1)Q14397GLUCOKINASE REGULATORY PROTEIN (GLUCOKINASE REGULATOR)P14314PROTEIN KINASE C SUBSTRATE, 80 KD PROTEIN, HEAVY CHAIN (PKCSH)(80K-H PROTEIN)P06241PROTO-ONCOGENE TYROSINE-PROTEIN KINASE FYN (P59-FYN) (SYN) (SLK)P42685TYROSINE-PROTEIN KINASE FRK (NUCLEAR TYROSINE PROTEIN KINASERAK)Q9HA64HYPOTHETICAL FRUCTOSAMINE KINASE-LIKE PROTEINFLJ12171/DKFZP564D202P36888FL CYTOKINE RECEPTOR PRECURSOR (TYROSINE-PROTEIN KINASERECEPTOR FLT3) (STEM CELL TYROSINE KINASE 1) (STK-1) (CD135 ANTIGEN)P09769PROTO-ONCOGENE TYROSINE-PROTEIN KINASE FGR (P55-FGR) (C-FGR)P07332PROTO-ONCOGENE TYROSINE-PROTEIN KINASE FES/FPS (C-FES)P16591PROTO-ONCOGENE TYROSINE-PROTEIN KINASE FER (P94-FER) (C-FER)Q05397FOCAL ADHESION KINASE 1 (FADK 1) (PP125FAK) (PROTEIN-TYROSINEKINASE 2)O15197EPHRIN TYPE-B RECEPTOR 6 PRECURSOR (TYROSINE-PROTEIN KINASE-DEFECTIVE RECEPTOR EPH-6) (HEP)P54760EPHRIN TYPE-B RECEPTOR 4 PRECURSOR (TYROSINE-PROTEIN KINASERECEPTOR HTK)Q15303ERBB-4 RECEPTOR PROTEIN-TYROSINE KINASE PRECURSOR (P180ERBB4)(TYROSINE KINASE-TYPE CELL SURFACE RECEPTOR HER4)P21860ERBB-3 RECEPTOR PROTEIN-TYROSINE KINASE PRECURSOR (TYROSINEKINASE-TYPE CELL SURFACE RECEPTOR HER3)P04626RECEPTOR PROTEIN-TYROSINE KINASE ERBB-2 PRECURSOR (P185ERBB2)(NEU PROTO-ONCOGENE) (C-ERBB-2) (TYROSINE KINASE-TYPE CELLSURFACE RECEPTOR HER2) (MLN 19)P54753EPHRIN TYPE-B RECEPTOR 3 PRECURSOR (TYROSINE-PROTEIN KINASERECEPTOR HEK-2)P29323EPHRIN TYPE-B RECEPTOR 2 PRECURSOR (TYROSINE-PROTEIN KINASERECEPTOR EPH-3) (DRT) (RECEPTOR PROTEIN-TYROSINE KINASE HEK5)(ERK)P54762EPHRIN TYPE-B RECEPTOR 1 PRECURSOR (TYROSINE-PROTEIN KINASERECEPTOR EPH-2) (NET) (HEK6) (ELK)P29322EPHRIN TYPE-A RECEPTOR 8 (TYROSINE-PROTEIN KINASE RECEPTOR EEK)(EPH-AND ELK-RELATED KINASE) (HEK3)Q15375EPHRIN TYPE-A RECEPTOR 7 PRECURSOR (TYROSINE-PROTEIN KINASERECEPTOR EHK-3) (EPH HOMOLOGY KINASE-3) (RECEPTOR PROTEIN-TYROSINE KINASE HEK11)P54756EPHRIN TYPE-A RECEPTOR 5 PRECURSOR (TYROSINE-PROTEIN KINASERECEPTOR EHK-1) (EPH HOMOLOGY KINASE-1) (RECEPTOR PROTEIN-TYROSINE KINASE HEK7)P54764EPHRIN TYPE-A RECEPTOR 4 PRECURSOR (TYROSINE-PROTEIN KINASERECEPTOR SEK) (RECEPTOR PROTEIN-TYROSINE KINASE HEK8)P29320EPHRIN TYPE-A RECEPTOR 3 PRECURSOR (TYROSINE-PROTEIN KINASERECEPTOR ETK1) (HEK) (HEK4)P29317EPHRIN TYPE-A RECEPTOR 2 PRECURSOR (TYROSINE-PROTEIN KINASERECEPTOR ECK) (EPITHELIAL CELL KINASE)P21709EPHRIN TYPE-A RECEPTOR 1 PRECURSOR (TYROSINE-PROTEIN KINASERECEPTOR EPH)Q9NVF9ETHANOLAMINE KINASE-LIKE PROTEIN EKI2 (FLJ10761)P20827EPHRIN-A1 PRECURSOR (EPH-RELATED RECEPTOR TYROSINE KINASELIGAND 1) (LERK-1) (IMMEDIATE EARLY RESPONSE PROTEIN B61) (TUMORNECROSIS FACTOR, ALPHA-INDUCED PROTEIN 4)Q99956DUAL SPECIFICITY PROTEIN PHOSPHATASE 9 (MITOGEN-ACTIVATEDPROTEIN KINASE PHOSPHATASE 4) (MAP KINASE PHOSPHATASE 4) (MKP-4)Q16828DUAL SPECIFICITY PROTEIN PHOSPHATASE 6 (MITOGEN-ACTIVATEDPROTEIN KINASE PHOSPHATASE 3) (MAP KINASE PHOSPHATASE 3) (MKP-3)(DUAL SPECIFICITY PROTEIN PHOSPHATASE PYST1)Q9Y463DUAL-SPECIFICITY TYROSINE-PHOSPHORYLATION REGULATED KINASE 1B(MIRK PROTEIN KINASE)Q13627DUAL-SPECIFICITY TYROSINE-PHOSPHORYLATION REGULATED KINASE 1A(PROTEIN KINASE MINIBRAIN HOMOLOG) (MNBH) (HP86) (DUAL SPECIFICITYYAK1-RELATED KINASE)P28562DUAL SPECIFICITY PROTEIN PHOSPHATASE 1 (MAP KINASE PHOSPHATASE-1) (MKP-1) (PROTEIN-TYROSINE PHOSPHATASE CL100) (DUAL SPECIFICITYPROTEIN PHOSPHATASE HVH1)Q09013MYOTONIN-PROTEIN KINASE (MYOTONIC DYSTROPHY PROTEIN KINASE)(MDPK) (DM-KINASE) (DMK) (DMPK) (MT-PK)Q16832DISCOIDIN DOMAIN RECEPTOR 2 PRECURSOR (RECEPTOR PROTEIN-TYROSINE KINASE TKT) (TYROSINE-PROTEIN KINASE TYRO 10)(NEUROTROPHIC TYROSINE KINASE, RECEPTOR-RELATED 3)Q08345EPITHELIAL DISCOIDIN DOMAIN RECEPTOR 1 PRECURSOR (TYROSINE-PROTEIN KINASE CAK) (CELL ADHESION KINASE) (TYROSINE KINASE DDR)(DISCOIDIN RECEPTOR TYROSINE KINASE) (TRK E) (PROTEIN-TYROSINEKINASE RTK 6)P53355DEATH-ASSOCIATED PROTEIN KINASE 1 (DAP KINASE 1)O15075SERINE/THREONINE-PROTEIN KINASE DCAMKL1 (DOUBLECORTIN-LIKE ANDCAM KINASE-LIKE 1)P41240TYROSINE-PROTEIN KINASE CSK (C-SRC KINASE) (PROTEIN-TYROSINEKINASE CYL)Q9NYV4CELL DIVISION CYCLE 2-RELATED PROTEIN KINASE 7 (CDC2-RELATEDPROTEIN KINASE 7) (CRKRS)Q9H4B4CYTOKINE-INDUCIBLE SERINE/THREONINE-PROTEIN KINASE (FGF-INDUCIBLEKINASE) (PROLIFERATION-RELATED KINASE)P49761PROTEIN KINASE CLK3P49760PROTEIN KINASE CLK2P49759PROTEIN KINASE CLK1 (CLK)O96017SERINE/THREONINE-PROTEIN KINASE CHK2 (CDS1)O14757SERINE/THREONINE-PROTEIN KINASE CHK1Q16667CYCLIN-DEPENDENT KINASE INHIBITOR 3 (CDK2-ASSOCIATED DUALSPECIFICITY PHOSPHATASE) (KINASE ASSOCIATED PHOSPHATASE) (CYCLIN-DEPENDENT KINASE INTERACTING PROTEIN 2) (CYCLIN-DEPENDENT KINASEINTERACTOR 1)Q14004CELL DIVISION CYCLE 2-LIKE PROTEIN KINASE 5 (CHOLINESTERASE-RELATED CELL DIVISION CONTROLLER) (CDC2-RELATED PROTEIN KINASE 5)Q15131CELL DIVISION PROTEIN KINASE 10 (SERINE/THREONINE-PROTEIN KINASEPISSLRE)P50750CELL DIVISION PROTEIN KINASE 9 (SERINE/THREONINE-PROTEIN KINASEPITALRE) (C-2K)P49336CELL DIVISION PROTEIN KINASE 8 (PROTEIN KINASE K35)P50613CELL DIVISION PROTEIN KINASE 7 (CDK-ACTIVATING KINASE) (CAK) (39 KDAPROTEIN KINASE) (P39 MO15) (STK1) (CAK1)Q00534CELL DIVISION PROTEIN KINASE 6 (SERINE/THREONINE-PROTEIN KINASEPLSTIRE)Q00535CELL DIVISION PROTEIN KINASE 5 (TAU PROTEIN KINASE II CATALYTICSUBUNIT) (TPKII CATALYTIC SUBUNIT) (SERINE/THREONINE-PROTEIN KINASEPSSALRE)Q00526CELL DIVISION PROTEIN KINASE 3P24941CELL DIVISION PROTEIN KINASE 2 (P33 PROTEIN KINASE)O14519CYCLIN-DEPENDENT KINASE 2-ASSOCIATED PROTEIN 1 (CDK2-ASSOCIATEDPROTEIN 1) (PUTATIVE ORAL CANCER SUPPRESSOR) (DELETED IN ORALCANCER-1) (DOC-1)O00311CELL DIVISION CYCLE 7-RELATED PROTEIN KINASE (CDC7-RELATED KINASE)(HSCDC7) (HUCDC7)Q15078CYCLIN-DEPENDENT KINASE 5 ACTIVATOR 1 PRECURSOR (CDK5 ACTIVATOR1) (CYCLIN-DEPENDENT KINASE 5 REGULATORY SUBUNIT 1) (TAU PROTEINKINASE II 23 KDA SUBUNIT) (TPKII REGULATORY SUBUNIT) (P23) (P25) (P35)P06493CELL DIVISION CONTROL PROTEIN 2 HOMOLOG (P34 PROTEIN KINASE)(CYCLIN-DEPENDENT KINASE 1) (CDK1)Q9UHJ6CARBOHYDRATE KINASE-LIKE PROTEINO43683MITOTIC CHECKPOINT SERINE/THREONINE-PROTEIN KINASE BUB1 (HBUB1)(BUB1A)O60566MITOTIC CHECKPOINT SERINE/THREONINE-PROTEIN KINASE BUB1 BETA(HBUBR1) (MAD3/BUB1-RELATED PROTEIN KINASE) (MITOTIC CHECKPOINTKINASE MAD3L)Q06187TYROSINE-PROTEIN KINASE BTK (BRUTON'S TYROSINE KINASE)(AGAMMAGLOBULINAEMIA TYROSINE KINASE) (ATK) (B CELL PROGENITORKINASE) (BPK)P51813CYTOPLASMIC TYROSINE-PROTEIN KINASE BMX (BONE MARROW KINASEBMX) (EPITHELIAL AND ENDOTHELIAL TYROSINE KINASE) (ETK) (NTK38)P36894BONE MORPHOGENETIC PROTEIN RECEPTOR TYPE IA PRECURSOR(SERINE/THREONINE-PROTEIN KINASE RECEPTOR R5) (SKR5) (ACTIVINRECEPTOR-LIKE KINASE 3) (ALK-3)P51451TYROSINE-PROTEIN KINASE BLK (B LYMPHOCYTE KINASE) (P55-BLK)Q04771ACTIVIN RECEPTOR TYPE I PRECURSOR (ACTR-I) (SERINE/THREONINE-PROTEIN KINASE RECEPTOR R1) (SKR1) (ACTIVIN RECEPTOR-LIKE KINASE 2)(ALK-2) (TGF-B SUPERFAMILY RECEPTOR TYPE I) (TSR-I)Q13315SERINE-PROTEIN KINASE ATM (ATAXIA TELANGIECTASIA MUTATED) (A-T,MUTATED)P35626BETA-ADRENERGIC RECEPTOR KINASE 2 (BETA-ARK-2) (G-PROTEINCOUPLED RECEPTOR KINASE 3)P25098BETA-ADRENERGIC RECEPTOR KINASE 1 (BETA-ARK-1) (G-PROTEINCOUPLED RECEPTOR KINASE 2)P57078SERINE/THREONINE-PROTEIN KINASE ANKRD3 (ANKYRIN REPEAT DOMAINPROTEIN 3)Q9Y243RAC-GAMMA SERINE/THREONINE PROTEIN KINASE (RAC-PK-GAMMA)(PROTEIN KINASE AKT-3) (PROTEIN KINASE B, GAMMA) (PKB GAMMA)P31751RAC-BETA SERINE/THREONINE PROTEIN KINASE (RAC-PK-BETA) (PROTEINKINASE AKT-2) (PROTEIN KINASE B, BETA) (PKB BETA)Q02952A-KINASE ANCHOR PROTEIN 12 (A-KINASE ANCHOR PROTEIN 250 KDA) (AKAP250) (MYASTHENIA GRAVIS AUTOANTIGEN GRAVIN)Q99996A KINASE ANCHOR PROTEIN 9 (PROTEIN KINASE A ANCHORING PROTEIN 9)(PRKA9) (A-KINASE ANCHOR PROTEIN 450 KDA) (AKAP 450) (A-KINASEANCHOR PROTEIN 350 KDA) (AKAP 350) (HGAKAP 350) (AKAP 120 LIKEPROTEIN) (HYPERION PROTEIN) (YOTIAO PROTEIN) (CENTROSO43823A-KINASE ANCHOR PROTEIN 8 (A-KINASE ANCHOR PROTEIN 95 KDA) (AKAP95)O43687A-KINASE ANCHOR PROTEIN 7 (A-KINASE ANCHOR PROTEIN 9 KDA)Q13023A KINASE ANCHOR PROTEIN 6 (PROTEIN KINASE A ANCHORING PROTEIN 6)(PRKA6) (A-KINASE ANCHOR PROTEIN 100 KDA) (AKAP 100) (MAKAP)P24588A-KINASE ANCHOR PROTEIN 5 (A-KINASE ANCHOR PROTEIN 79 KDA) (AKAP79) (CAMP-DEPENDENT PROTEIN KINASE REGULATORY SUBUNIT II HIGHAFFINITY BINDING PROTEIN) (H21)O75969A KINASE ANCHOR PROTEIN 3 (PROTEIN KINASE A ANCHORING PROTEIN 3)(PRKA3) (A-KINASE ANCHOR PROTEIN 110 KDA) (AKAP 110) (SPERM OOCYTEBINDING PROTEIN) (FIBROUSHEATHIN I) (FIBROUS SHEATH PROTEIN OF 95 KDA)(FSP95)Q9Y2D5A KINASE ANCHOR PROTEIN 2 (PROTEIN KINASE A ANCHORING PROTEIN 2)(PRKA2)Q92667A KINASE ANCHOR PROTEIN 1, MITOCHONDRIAL PRECURSOR (PROTEINKINASE A ANCHORING PROTEIN 1) (PRKA1) (A-KINASE ANCHOR PROTEIN 149 KDA)(AKAP 149) (DUAL SPECIFICITY A-KINASE ANCHORING PROTEIN 1) (D-AKAP-1) (SPERMATID A-KINASE ANCHOR PROTEIN 84) (S-Q9UKA4A KINASE ANCHOR PROTEIN 11 (PROTEIN KINASE A ANCHORING PROTEIN11) (PRKA11) (A KINASE ANCHOR PROTEIN 220 KDA) (AKAP 220) (HAKAP220)O43572A KINASE ANCHOR PROTEIN 10, MITOCHONDRIAL PRECURSOR (PROTEINKINASE A ANCHORING PROTEIN 10) (PRKA10) (DUAL SPECIFICITY A-KINASEANCHORING PROTEIN 2) (D-AKAP-2)P42684TYROSINE-PROTEIN KINASE ABL2 (TYROSINE KINASE ARG)P00519PROTO-ONCOGENE TYROSINE-PROTEIN KINASE ABL1 (P150) (C-ABL)Q9UGI95′-AMP-ACTIVATED PROTEIN KINASE, GAMMA-3 SUBUNIT (AMPK GAMMA-3CHAIN) (AMPK GAMMA3)Q9UGJ05′-AMP-ACTIVATED PROTEIN KINASE, GAMMA-2 SUBUNIT (AMPK GAMMA-2CHAIN) (AMPK GAMMA2) (H91620P)P546195′-AMP-ACTIVATED PROTEIN KINASE, GAMMA-1 SUBUNIT (AMPK GAMMA-1CHAIN) (AMPKG)O437415′-AMP-ACTIVATED PROTEIN KINASE, BETA-2 SUBUNIT (AMPK BETA-2 CHAIN)Q9Y4785′-AMP-ACTIVATED PROTEIN KINASE, BETA-1 SUBUNIT (AMPK BETA-1 CHAIN)(AMPKB)P546465′-AMP-ACTIVATED PROTEIN KINASE, CATALYTIC ALPHA-2 CHAIN (AMPKALPHA-2 CHAIN)Q131315′-AMP-ACTIVATED PROTEIN KINASE, CATALYTIC ALPHA-1 CHAIN (AMPKALPHA-1 CHAIN)P4265514-3-3 PROTEIN EPSILON (MITOCHONDRIAL IMPORT STIMULATION FACTOR LSUBUNIT) (PROTEIN KINASE C INHIBITOR PROTEIN-1) (KCIP-1) (14-3-3E)P3194614-3-3 PROTEIN BETA/ALPHA (PROTEIN KINASE C INHIBITOR PROTEIN-1)(KCIP-1) (PROTEIN 1054)









TABLE 2










This is list of substrates as available from Upstate.


http://www.upstate.com/features/kinaseprofiler.q./KinaseProfiler+%23153%3B#Kinase1







EAIYAAPFAKKK












AMPK
Rat
AMARAASAAALARRR


NEWI Arg
Human
EAIYAAPFAKKK


NEWI AuroraA
Human
LRRASLG


NEWI Axl
Human
KKSRGDYMTMQIG


Blk
Mouse
polyGlu:Tyr


NEWI Bmx
Human
polyGlu:Tyr


CaMKII
Rat
KKLNRTLSVA


CaMKIV
Human
KKLNRTLSVA


CDK1/cyclinB
Human
Histone H1


CDK2/cyclinA
Human
Histone H1


CDK2/cyclinE
Human
Histone H1


CDK3/cyclinE
Human
Histone H1


CDK5/p35
Human
Histone H1


CDK6/cyclinD3
Human
Histone H1


CDK7/cyclinH/MAT1
Human
peptide


CHK1
Human
KKKVSRSGLYRSPSMPENLNRPR


CHK2
Human
KKKVSRSGLYRSPSMPENLNRPR


CK1
Yeast
KRRRALS(p)VASLPGL


CK2
Human
RRRDDDSDDD


c-RAF
Human
MBP


CSK
Human
polyGlu:Tyr


cSRC
Human
KVEKIGEGTYGVVYK


Fes
Human
polyGlu:Tyr


FGFR3
Human
polyGlu:Tyr


NEWI Flt3
Human
EAIYAAPFAKKK


Fyn
Human
KVEKIGEGTYGVVYK


NEWI GSK3α
Human
YRRAAVPPSPSLSRHSSPHQS(p)EDEEE


GSK3β
Human
YRRAAVPPSPSLSRHSSPHQS(p)EDEEE


IGF-1R
Human
KKKSPGEYVNIEFG


IKKα
Human
peptide


IKKβ
Human
peptide


IR
Human
KKSRGDYMTMQIG


JNK1α1
Human
ATF2


JNK2α2
Human
ATF2


JNK3
Rat
peptide


Lck
Human
KVEKIGEGTYGVVYK


NEWI Lyn
Human
polyGlu:Tyr


Lyn
Mouse
polyGlu:Tyr


MAPK1
Human
peptide


MAPK2
Human
MBP


MAPK2
Mouse
MBP


MAPKAP-K2
Rat
KKLNRTLSVA


MEK1
Human
MAPK2


MKK4
Mouse
JNK1α 1


MKK6
Human
SAPK2a


MKK7β
Human
JNK1α 1


MSK1
Human
GRPRTSSFAEGKK


p70S6K
Human
KKRNRTLTV


PDGFRα
Human
polyGlu:Tyr


PDGFRβ
Human
polyGlu:Tyr


PDK1
Human
KTFCGTPEYLAPEVRREPRILSEEEQEMFRDFDYIADWC


PAK2
Human
long S6 peptide


PKA
Bovine
LRRASLG


PKA
Human
LRRASLG


PKBα
Human
GRPRTSSFAEGKK


PKBβ
Human
GRPRTSSFAEGKK


NEWI PKB gamma
Human
GRPRTSSFAEGKK


PKCα
Human
Histone H1


PKCβII
Human
Histone H1


PKCε
Human
ERMRPRKRQGSVRRRV


PKCγ
Human
Histone H1


NEWI PKC delta
Human
ERMRPRKRQGSVRRRV


NEWI PKC eta
Human
ERMRPRKRQGSVRRRV


NEWI PKC lota
Human
ERMRPRKRQGSVRRRV


NEWI PKC mu
Human
KKLNRTLSVA


PKCθ
Human
Histone H1


NEWI PKD2
Human
KKLNRTLSVA


PRAK
Human
KKLRRTLSVA


PRK2
Human
AKRRRLSSLRA


ROCK-II
Human
long S6 peptide


ROCK-II
Rat
long S6 peptide


NEWI Rsk1
Human
KKKNRTLSVA


Rsk1
Rat
KKKNRTLSVA


Rsk2
Human
KKKNRTLSVA


Rsk3
Human
KKKNRTLSVA


SAPK2a
Human
MBP


SAPK2b
Human
MBP


SAPK3
Human
MBP


SAPK4
Human
MBP


SGK
Human
GRPRTSSFAEGKK


Yes
Human
polyGlu:Tyr


Syk
Human
polyGlu:Tyr


NEWI TrkB
Human
polyGlu:Tyr


ZAP-70
Human
polyGlu:Tyr









Claims
  • 1-36. (canceled)
  • 37. A method of determining the activity of an enzyme, or the effect a test compound has on the activity of the enzyme, by using mass spectroscopy comprising the steps of: (i) providing a probe carrying an immobilised enzyme; (ii) optionally introducing the test compound; (iii) introducing one or more reactants to the immobilised enzyme for a time, and in a form sufficient for a reaction to take place; (iv) drying the probe; (v) subjecting the probe to mass spectroscopy; (vi) determining the activity of the enzyme, or the effect the test compound had on the activity of the enzyme, by detecting the presence and/or absence of one or more products and/or the one or more reactants; characterised in that a layer resistant to non-specific protein binding is provided on the probe surface.
  • 38. The method of claim 37, wherein said layer resistant to non-specific protein binding comprises protein repellent molecules such as polyethylene glycol molecules, which protein repellent molecules are immobilised on the probe surface.
  • 39. The method of claim 37, wherein the enzyme is a kinase such as a serine kinase or threonine kinase, an oxidoreductase, a transferase, a hydrolase, a lyase, a ligase, a carboxylase, an esterase, a phosphodiesterase, a protein phosphatase such as a tyrosine phosphatase, a G-protein coupled receptor, an ATP-dependent chaperone, a cyclooxygenase, a cytochrome P450, a sialidase, a short-chain dehydrogenase, a short-chain reductase, or an isomerase.
  • 40. The method of claim 37 for determining the activity of one or more kinases or the effect a test compound has on the activity of one or more kinases by using MALDI mass spectroscopy.
  • 41. The method of claim 40, wherein the one or more reactants comprise a phosphate donor, a phosphate acceptor and a divalent cation.
  • 42. The method of claim 41, wherein the phosphate donor is a phosphorylated substrate and the phosphate acceptor is a nucleotide di phosphate (NDP).
  • 43. The method of claim 41, wherein the phosphate donor is a nucleotide tri phosphate (NTP) and the phosphate acceptor is a substrate to be phosphorylated.
  • 44. The method of claim 41, wherein the divalent cation is magnesium or manganese.
  • 45. The method of claim 42, wherein the nucleotide di phosphate or tri phosphate is an adenine di or tri phosphate.
  • 46. The method of claim 37, wherein the product is a nucleotide tri phosphate or a nucleotide di phosphate and its presence is detected.
  • 47. The method of claim 46, wherein the nucleotide tri phosphate or nucleotide di phosphate are detected as [NDP]− or [NTP]− or as one or more adduct peaks thereof.
  • 48. The method as claimed in claim 47, wherein the one or more adduct peaks are adduct peaks with a monovalent cation (M+).
  • 49. The method of claim 48, wherein the one or more adduct peaks include: [ATPM]−, [ATPM2]− and [ATPM3]− and/or [ADPM]−, [ADPM2]−, and [ADPM3]−.
  • 50. The method of claim 37, further comprising, between step (iv) and step (v), the step of overlaying the probe with energy absorbing molecules.
  • 51. The method of claim 50, wherein said energy absorbing molecules are deposited onto the probe surface in a non-aqueous solvent, followed by evaporation of the solvent.
  • 52. The method of claim 37, wherein said probe carries more than one enzyme.
  • 53. The method of in claim 37, wherein in step (iii) said one or more reactants are added in the presence of a low salt buffer.
  • 54. The method of claim 53, wherein said low salt buffer is a semi-volatile buffer such as ammonium bicarbonate buffer.
  • 55. The method of claim 37, wherein in step (iii) said one or more reactants are added in the presence of a buffer containing a semi-volatile salt; and further comprising the step, after the reaction is finished, of removing the semi-volatile buffer.
  • 56. The method of claim 37, wherein the enzymes are attached to the probe as fusion proteins, typically via a tag.
  • 57. The method of claim 37, wherein said test compound is added before, after or with the one or more reactants to determine its effect on enzyme activity.
  • 58. The method of claim 37, wherein the mass spectroscopy is a laser desorption ionisation mass spectroscopy, preferably a MALDI mass spectrometry.
  • 59. The method of claim 37, wherein the one or more reactants and the optional test compound are introduced to the immobilised enzyme as a droplet, such as a droplet having a volume of less than 1 microliter.
  • 60. A probe for use with a mass spectrometer in the method of claim 37, comprising a support having an electroconductive surface thereon, characterised in that the target surface comprises an array having a plurality of enzymes immobilised thereon, and in that the probe surface is provided with a layer resistant to non-specific protein binding.
Priority Claims (3)
Number Date Country Kind
0224872.2 Oct 2002 GB national
PCT/EP02/01859 Dec 2002 WO international
0311946.8 May 2003 GB national
PCT Information
Filing Document Filing Date Country Kind 371c Date
PCT/IB03/05427 10/27/2003 WO 5/23/2006