Patent Application
20180259513
The invention relates to a facile method of localising sulfhydryl (-SH) group containing biomolecules, in particular peptides, to the membranes of living cells and enveloped viruses and a kit for use in a biological laboratory in accordance with the method.
Historically, the capabilities of biological and chemical laboratories have resulted in biological and chemical research being performed at separate locations. Bioconjugation is the process of coupling two biomolecules together in a covalent linkage (Hermanson (2008)). Bioconjugation is employed to study the function of biomolecules in living systems. The methods employed require the capabilities of both biological and chemical laboratories.
Water dispersible constructs of the general structure F-S-L (where F is a functional moiety, S is a spacer and L is a lipid) that spontaneously incorporate into lipid bilayers (KODE™ Constructs) have provided researchers with a means of functionalising the surface of living cells and membrane bound organelles and virions without the need for the capabilities of a chemical laboratory (Bovin et al (2005), Carter et al (2007), Korchagina et al (2008) and Bovin et al (2009)).
Notwithstanding these advances, the use of KODE™ Constructs by researchers in biological laboratories is for the most part restricted to the use of KODE™ Constructs that are available commercially. A method of preparing bespoke KODE™ Constructs capable of being employed in a biological laboratory using the equipment routinely available in those facilities is desirable.
Is an object of the invention described in this specification to provide such a method. Is an object of the invention described in this specification to provide a kit to facilitate the use of such method. These objects are to be read disjunctively with the object to at least provide a useful choice.
In a first aspect the invention provides a method of localising a sulfhydryl (—SH) group containing biomolecule to a surface comprising the steps:
Preferably, the sulfhydryl (—SH) group is a cysteine residue (Cys).
Preferably, the sulfhydryl (—SH) group containing biomolecule is a peptide. More preferably, the sulfhydryl (—SH) group containing biomolecule is a peptide with a cysteine residue (Cys) at or proximal to the C-terminus of the peptide. Most preferably, the sulfhydryl (—SH) group containing biomolecule is a peptide with a cysteine residue (Cys) at the C-terminus.
Preferably, the surface is a membrane. More preferably, the surface is a cell membrane or the membrane of an enveloped virus. Yet more preferably, the surface is a cell membrane. Most preferably, the surface is the cell membrane of a red blood cell.
The method permits the localising of sulfhydryl (—SH) group containing biomolecules to the membranes of living cells.
Preferably, the incubating is for a time greater than 8 hours and at room temperature (circa 25° C.).
Preferably, the drying is by freeze-drying.
Preferably, the solution of the reaction product is an aqueous solution of the reaction product. More preferably, the solution of the reaction product is an aqueous saline solution of the reaction product.
The method excludes a step of purifying the reaction product by conventional separation methods such as column chromatography prior to preparing the solution of the reaction product and the step of contacting the solution of the reaction product with the surface.
Preferably, the volatile reaction buffer is 0.1M 4-methylmorpholine formate (4-MMF) in 30% isopropanol (IPA) at a pH in the range 6.5 to 6.7.
Preferably, m is the integer 2. Preferably, n is the integer 2. Preferably, p is the integer 2. Preferably, q is the integer 4. More preferably, each of m, n and p are the integer 2 and q is the integer 4. Preferably, the median value of r is 6.
Preferably, L is an amide linked diacylglycerophospholipid. More preferably, L is an amide linked phosphatidylethanolamine or a phosphatidylserine. Yet more preferably, L is an amide linked phosphatidylethanolamine. Most preferably, L is 1,2-O-dioleoyl-sn-glycero-3-phosphatidylethanolamine (DOPE).
Preferably,
Preferably, M is H or CH3. More preferably, M is H.
In a second aspect the invention provides a kit packaged with directions for use in a method of localising a sulfhydryl (—SH) group containing biomolecule to a surface comprising:
F is
[followed by page 5]
Preferably, the sulfhydryl (—SH) group is a cysteine residue (Cys).
Preferably, the sulfhydryl (—SH) group containing biomolecule is a peptide. More preferably, the sulfhydryl (—SH) group containing biomolecule is a peptide with a cysteine residue (Cys) at or proximal to the C-terminus of the peptide. Most preferably, the sulfhydryl (—SH) group containing biomolecule is a peptide with a cysteine residue (Cys) at the C-terminus.
Preferably, the volatile reaction buffer is 0.1M 4-methylmorpholine formate (4-MMF) in 30% isopropanol (IPA) at a pH in the range 6.5 to 6.7.
Preferably, m is the integer 2. Preferably, n is the integer 2. Preferably, p is the integer 2. Preferably, q is the integer 4. More preferably, each of m, n and p are the integer 2 and q is the integer 4. Preferably, the median value of r is 6.
Preferably, L is an amide linked diacylglycerophospholipid. More preferably, L is an amide linked phosphatidylethanolamine or a phosphatidylserine. Yet more preferably, L is an amide linked phosphatidylethanolamine. Most preferably, L is 1,2-O-dioleoyl-sn-glycero-3-phosphatidylethanolamine (DOPE).
Preferably,
Preferably, M is H or CH3. More preferably, M is H.
In the description and claims of this specification the following acronyms, terms and phrases have the meaning provided:
“Comprising” means “including”, “containing” or “characterized by” and does not exclude any additional element, ingredient or step.
“Consisting of” means excluding any element, ingredient or step not specified except for impurities and other incidentals.
“Localised” means associated with a surface by non-covalent interactions between the molecule comprising the localised entity and the surface (and “localising” and “localisation” have a corresponding meaning).
“Kodecyte” means a cell modified by incorporation into the cell membrane of a construct of the general structure F-S-L (where F is a functional moiety, S is a spacer selected to provide a water dispersible construct and L is a lipid).
“Kodevirion” means an enveloped virus particle modified by incorporation into the enveloping membrane of a construct of the general structure F-S-L (where F is a functional moiety, S is a spacer selected to provide a water dispersible construct and L is a lipid).
“PBS” denotes phosphate buffered saline.
“Proximal” means in the vicinity of the specified location. For the avoidance of doubt the phrase “proximal to the C-terminus of the peptide” means within x amino acid residues of the C-terminus (where the peptide consists of ‘x’ amino acid residues).
“Reaction product” means the product of a reaction prior to purification.
“Saline” means a solution of one or more salts.
“Synthetic” means prepared by chemical synthesis.
“Water soluble” means, in the context of describing the properties of constructs of the general structure F-S-L (where F is a functional moiety, S is a spacer and L is a lipid), a stable, single phase system is formed when the construct is contacted with water or saline (such as PBS) at a concentration of at least 100 μg/mL at a temperature of 25° C. in the absence of organic solvents or detergents. The terms “soluble” and “dispersible” are used synonymously.
It will be recognised that the phosphate moiety of a phospholipid is often protonated, but the proton (H+) may be replaced by another monovalent cation such as Na+, K+, NH4+or triethylamine ([NH(CH2CH3)3]+). Similarly, the primary and secondary amino functions of a construct may also be protonated. The constructs prepared according to the method described in this specification may therefore be prepared as a range of salts, including pharmaceutically acceptable salts.
The carboxylate residues of the moiety designated ‘CMG’ (Bovin et al (2009)) may be protonated, associated with another monovalent cation such as Na+, K+, NH4+ or triethylamine ([NH(CH2CH3)3]+) or covalently bound by amidation or esterification to a monovalent substituent to provide a substituted derivative such as the moiety designated ‘MCMG’.
Where the suffix “-al” is employed in respect of the substituents R1 and R2 of a diacyl lipid, an aldehyde structure is intended as exemplified by cis-9-octadecenal of the structure:
Where the suffix “-yl” is employed in respect of the substituents Ri and R2 of a dialkyl lipid, an alkyl structure is intended as exemplified by cis-9-octadecenyl of the structure:
In the absence of the stereochemistry at a chiral centre being shown, the representations of the structures of compounds comprising one or more chiral centres encompass the distereoisomers, enantiomers and mixtures thereof of the compounds, with the proviso that where the representation is of the structure of a compound or a portion of the structure of a compound of biological origin, the structure or portion of the structure represented is limited to structures or portions of structures that are functionally equivalent to the structure or portion of the structure of the compound of biological origin.
An asterisk (*) is used to represent a point of covalent attachment to another moiety and does not indicate an atom. Specifically, in the representations of the moieties F, S and L of the lipid conjugated maleimide of the structure F-S-L the asterisk denotes the point of covalent attachment to the immediately adjacent moiety.
The amino acid residues of peptides are identified according to Table 3 of Appendix 2 of Annex C of the Administrative Instructions under the Patent Cooperation Treaty dated 7 Feb. 2007 and in accordance with the convention:
[“amino (N) terminus”] H2N-XaaXaaXaa . . . XaaXaaXaa-COOH [“carboxy (C) terminus”]
The terms “first”, “second”, “third”, etc. used with reference to elements, features or integers of the subject matter defined in the Statement of Invention and Claims, or when used with reference to alternative embodiments of the invention are not intended to imply an order of preference.
Where concentrations or ratios of reagents are specified the concentration or ratio specified is the initial concentration or ratio of the reagents. Where values are expressed to one or more decimal places standard rounding applies. For example, 1.7 encompasses the range 1.650 recurring to 7.499 recurring.
The invention will now be described with reference to a General Example, a Specific Example, and the figures of the accompanying drawings pages.
Weinberg et al (2009) and Bovin et al (2009) both describe the preparation of peptide-lipid constructs for use in the preparation of kodecytes to be used in assays for the presence of reactive antibody. Both publications describe the preparation of peptide-lipid constructs via a lipid conjugated maleimide intermediate. Weinberg et al (2009) describes the preparation and use as the intermediate of a maleimido-derivative of DOPE-PEG6-NH2. Bovin et al (2009) describes the preparation and use as the intermediate of a construct designated FSL-RFG(Mal) (
Consistent with good laboratory practice the peptide-lipid constructs prepared by the methods disclosed in these publications are purified prior to their use in the preparation of the kodecytes required for use in diagnostic or prognostic assays. However, the step of purification by separation methods such as chromatography invariably results in losses of construct which is undesirable, particularly where the peptide is limited in amount, or the kodecytes to be prepared are only for experimental purposes.
In the method of the present invention the requirement for purification of the construct prior to use in the preparation of the kodecytes may be circumvented in part by the use of a reaction buffer that is removable by volatilisation. The removal of the reaction buffer can be conveniently achieved in a biological laboratory, particularly if the primary focus of that laboratory is cell biology, by freeze-drying (lyophilisation).
Following incubation of the reaction mix and drying according to the method of the invention, the incorporation of the peptide-lipid construct into the membrane of the cell (kodecyte) or enveloped virus (kodevirion) serves as the separation step that has otherwise been achieved by the chromatography. The method of the invention circumvents the need for this intermediate purification step.
The method of the invention also permits the provision of a kit that may be conveniently employed in laboratories lacking equipment or experience in the purification of synthetic reaction products.
In accordance with the method of the invention a quantity of sulfhydryl (—SH) group containing peptide, e.g. a Cys containing peptide, sufficient to provide at least a 20% molar excess relative to the quantity of lipid conjugated maleimide to be used is prepared. Typically, synthetic peptides are supplied with quoted purities of >95% and a 20% excess should be sufficient for the reaction with the lipid conjugated maleimide to be complete. However, it will be recognised that quality and purity of peptides may vary between suppliers attributable to factors including cysteine (Cys) residue oxidation and small volume weighing errors. For these reasons users of the method of the invention may wish to employ up to a 100% molar excess of peptide relative to the quantity of lipid conjugated maleimide to be used to ensure near quantitative yield of peptide-lipid construct.
If necessary, spectrophotometric determination of reactive sulfhydryl content (CSH) (μmol HS/mg) may be determined according to known procedures (Anon (2011)). If the determined CSH is too low the reduction of disulfide may be considered (Anon (2007)). The use of tributyl phosphine or TCEP should be avoided due to the reported reactivity with maleimide (Shafer et al (2000); Tyagarajan et al (2003)). If spectrophotometric determination of CSH is not performed users of the method of the invention are recommended to assume a purity of the synthetic peptide of no greater than 75% for the purpose of stoichiometric calculations (Cook (2006)).
It will be recognised from the foregoing that immunoglobulins are candidate sulfhydryl containing peptides that may potentially be used in the method of the invention. The indigenous disulfide groups in the hinge region of the immunoglobulin structure may be reduced with low concentrations of DTT, TCEP or MEA while leaving the disulfide bonds between the heavy and light chains relatively intact (Sun et al (2005)). As noted in Hermanson (2008) similar reduction can be done with F(ab′2) fragments produced from the pepsin digestion of immunoglobulin G (IgG) molecules.
As noted elsewhere in this specification the phrase “sulfhydryl (—SH) group containing biomolecules” will be understood to encompass biomolecules where the requisite sulfhydryl group is natural, generated (i.e. by reduction of an existing disulfide) or introduced. Methods for the introduction of sulfhydryl groups in biomolecules using reagents such as N-acetyl, homocysteine thiolactone, AMBH, cystamine, SAMSA, SATA, SATP, SMPT and SPDP are known (Hermanson (2008)).
Irrespective of its source the quantity of sulfhydryl containing peptide is added to a volume of volatile reaction buffer (0.1 M 4-methylmorpholine formate (4-MMF) in 30% isopropanol (IPA) at a pH in the range 6.5 to 6.7) from a freshly opened, sealed vial and sonicated until a clear solution is obtained. An initial volume of 300 μl of the volatile reaction buffer is recommended for a quantity of peptide corresponding to 1 μmol (100% molar excess with respect to the lipid conjugated maleimide). The volatile reaction buffer should be stored degassed in a nitrogen atmosphere.
If necessary, but with caution, a further volume of buffer may be added or mixtures (1:1; v/v) of trifluoroethanol-volatile reaction buffer, hexafluroisopropanol-volatile reaction buffer, 2-methoxyethanol-volatile reaction buffer, trifluoroethanol-pyridine, hexafluoroisopropanol-pyridine, 2-methoxyethanol-pyridine, neat DMF or 6 guanidinium hydrochlorides may be used for dissolving peptides that otherwise prove insoluble at sufficiently high concentration.
Checking the extent of peptide solubility in the volatile reaction buffer before proceeding with the reaction is recommended. Note that DMSO should not be used to promote dissolution of the peptide as it may promote disulfide bond formation. Complete dissolution of the peptide is a prerequisite for successful reaction with the lipid conjugated maleimide.
An amount of the lipid conjugated maleimide (0.5 μmol) is reconstituted in a volume (100 μl) of the volatile reaction buffer from a freshly opened vial and following mixing by sonicating or vortexing for one minute a volume (300 μl) of the solution of peptide prepared as above added to the volume of lipid conjugated maleimide.
The reaction mix is sonicated in the sealed vial for 10 to 60 minutes in an ultrasonic bath. Typically, a clear solution will be obtained, but some partial precipitation may occur to provide a cloudy solution or fine suspension, particularly if the peptide being used is a basic peptide. In such circumstances periodic sonication over a period up to two hours should be sufficient to achieve adequate dissolution.
The mixture is incubated away from direct light for a time and temperature sufficient to allow all the lipid conjugated maleimide to react, e.g. overnight at at room temperature (circa 25° C.).
Optionally, the incubation is followed by the quenching of any possibly unreacted lipid conjugated maleimide by the addition of a non-interfering sulfhydryl containing compound such as cysteine (Cys), DTT, ME, etc. prior to freeze-drying. For example, the addition of a volume (60 μl) of 0.1 M mercaptoethanol may be added with stirring for at least one hour prior to the addition of 1 mL of water, freezing and drying.
Note that a vacuum centrifuge is not to be used. In addition, drying the reaction product using Fisher apparatus at elevated temperatures, or washing with absolute ether can yield a dried reaction product that is difficult to reconstitute in water.
For aliquoting and storage the dried reaction product is reconstituted in water by the addition of one drop of ethanol and a volume (1 mL) of water. Aliquots may then be freeze-dried as before in ready-to-use quantities. Immediate freeze-drying is recommended in the event the product is unstable in water or subject to degradation by abiotic or biotic factors. The reaction product following freeze-drying should be an amorphous white powder that is ready to use in the preparation of kodecytes.
Step 4—Contacting a Solution of the Reaction Product with a Surface
As noted above the method of the invention circumvents the need to purify the reaction product by separation methods (e.g. chromatography) and is therefore particularly convenient for use in a research laboratory with limited equipment, or equipment that is not suited to analytical and semipreparative scale purification. The reaction product is virtually free of by-products and contaminants that will interfere with the preparation of the kodecytes.
The preparation of kodecytes exploits the properties of synthetic constructs of the general structure F-S-L that are readily dispersible in biocompatible media, including saline, yet spontaneously incorporate into cell membranes. In effect, the purification is achieved in the method of the present invention by the incorporation of the construct in the cell membrane, any by-products and contaminants remaining dissolved in the suspending medium, e.g. a cell preservative (CELPRESOL™).
Kodecytes may be readily separated from the medium and washed without loss of construct as described elsewhere (Weinberg et al (2009); Bovin et al (2009)).
Presented with the Specific Example one could readily establish what variations to the exemplifying volatile reaction buffer (0.1 M 4-methylmorpholine formate (4-MMF) in 30% isopropanol (IPA) at a pH in the range 6.5 to 6.7) provided comparable results.
It is anticipated that volatile reaction buffers other than that specified above may be used. In addition to moderate variations in the concentrations of 4-MMF and IPA, these components of the reaction buffer may be substituted by other components. The amine (cationic) component (4-MMF) could be replaced by 4-ethylmorpholine, triethylamine, trimethylamine, N-methylpiperidine or N-methylpyrrolidine and the organic co-solvent (IPA), although preferred, could be replaced, at least in part, by n-propanol, ethanol, methanol, t-butanol, 2-methoxyethanol or trifluoroethanol. Where other co-solvents are included in the volatile reaction buffer the total concentration of co-solvent should be in the range 20 to 60%.
It is also anticipated that In addition to variations in the concentration of the components 4-MMF and IPA (and their substitution by other components) other buffering systems may be employed. However, trifluoroacetic acid (TFA) and hydrochloric acid (HCl) should not be used as components of these other buffering systems. These components (TFA and HCl) yield salts that are non-volatile at room temperature and are therefore best avoided. The molarity of the buffering system should be in the range 0.05 to 0.3 M and the pH in the range 5.8 to 7.5 when other buffering systems are employed.
The properties of a peptide-lipid construct and kodecytes prepared therefrom according to the method of the invention were compared with the properties of the same peptide-lipid construct (FSL-SYPH3) and kodecytes prepared therefrom according to known methods (Henry et al (2010)).
Blood group O packed red blood cells (RBCs) were washed with phosphate buffered saline (PBS). Washed RBCs were suspended in cell preservative (CELPRESOL™). PBS for the preparation of dilutions of constructs was filter sterilised. Stock solutions were prepared at a concentration of 200 μg/mL in PBS. Positive (POS) and negative (NEG) sera were chosen from a panel that had been previously determined by RPR, TPHA, and TPPA.
A volume of 2 mL of filter sterilised PBS was added to a vial containing 400 μg of the construct designated FSL-SYPH3 to provide a stock solution of 200 μg/mL. The dispersion was vortexed and warmed to 37° C. for ten minutes. A stock solution of the construct designated FSL-RFG (Mal)-SYPH3 was similarly prepared at the same concentration.
Dilution series for each of the constructs were prepared at concentrations of 25, 50, 100 and 200 μg/mL. Equal volumes (30 μL) of the packed group 0 RBCs were added to and mixed with each of the dilutions of the dilution series for each construct in glass tubes. The tubes were then incubated in a water bath at 37° C. for 120 minutes with intermittent gentle mixing (three times) during the incubation period. The incubated RBCs were then washed two times with PBS and one time with cell preservative (CELPRESOL™).
A cell suspension was prepared by adding 492 μL of cell preservative (CELPRESOL™) to an 8 μL volume of washed, packed RBCs. An aliquot (30 μL) of the cell suspension and an aliquot (30 μL) of SYPH3 positive or negative sera were then added to a Coombs card chamber and incubated at 37° C. for 30 minutes before centrifugation at automatic setting of a microcentrifuge (DIAMED™).
A photograph of the card following centrifugation is presented as
The experiment was repeated including the construct designated FSL-RFG(Mal) to confirm the observed serology scores were not attributable to cross-reactivity with this construct. The serology scores (with no discrimination between positive serology scores) are recorded in Table 2.
Samples (4 μL) of the reagents and constructs used were applied at a concentration of 2 mg/mL in water to a thin layer chromatography (TLC) plate (ALUMGRAN™ SIL G/UV silica 60) and eluted with 2:6:2 (v/v/v) chloroform/methanol/water containing 0.5% (v/v) pyridine. (The concentration of the construct designated FSL-RFG(Mal)-SYPH3 was based on the expected concentration of the construct excluding unreacted SYPH3 peptide.) The eluted TLC μlate was visualised by spraying with a solution of anisaldehyde in acetic acid and heating to a temperature of 200° C. A photograph of the visualised μlate is presented as
Consistent with the provision of a General Example it will be appreciated that variations and modifications may be made to the steps of the method illustrated with reference to the Specific Example without departing from the scope of the invention. The advantages discussed in the description may be provided in the alternative or in combination in these other embodiments of the invention. Where known equivalents exist to specific features, such equivalents are incorporated as if specifically referred to in this specification. In particular, it will be understood that for a non-specific interaction, such as the interaction between the lipid (L) moiety of the constructs (F-S-L) and a surface such as a membrane, regioisomers and stereoisomers of naturally occurring lipids can be functionally equivalent. For example, it is contemplated that diacylglycerol 2-phosphate could be substituted for phosphatidate (diacylglycerol 3-phosphate) and that the absolute configuration of phosphatidate could be either R or S.
A facile method of localising sulfhydryl containing molecules to surfaces is disclosed. The method has particular application in biological laboratories where access to equipment for chemical purification is restricted or unavailable.
| Number | Date | Country | Kind |
|---|---|---|---|
| 594941 | Aug 2011 | NZ | national |
| 599802 | May 2012 | NZ | national |
| Number | Date | Country | |
|---|---|---|---|
| Parent | 14241578 | Nov 2014 | US |
| Child | 15882714 | US |
