1. Field of the Invention
The invention generally relates to methods of assessing enzyme activity. More particularly, the invention relates to the use of electrochemical assays to quantify enzyme activity.
2. Description of the Relevant Art
Enzymes are biological catalysts of great scientific and economic importance. They are one of the best-established products in biotechnology with sales of enzymes representing a billion-dollar market. Therefore, there is a high demand for simple, reliable, and cost-effective assays for the rapid evaluation of the catalytic activity of enzymes.
The majority of existing enzyme assays rely on changes in the optical properties of an enzyme solution. Frequently, such changes are due to the oxidation of dyes by the hydrogen peroxide that is produced by oxidase enzymes, or the reduction of cofactor β-nicotinamide adenine dinucleotide (NAD+, or NADP+) by dehydrogenase enzymes. However, such assays often require auxiliary enzymes and/or toxic chromogenic agents, involve a large number of liquid-handling steps, require a time-consuming incubation, and have a limited utility in turbid solutions.
Enzyme assays can also be performed by monitoring changes in the electrochemical properties of enzyme solution. Such changes are typically due to the formation or consumption of redox active species in the course of enzymatic reaction. The existing electrochemical assays have their problems too. Their selectivity can be compromised in the presence of redox active interfering species. They need extra enzyme, which can be expensive, to calibrate the measurements. They are sensitive to the activity of electrode surface, which can change upon transferring the working electrode from an assay solution to a calibration solution. This limits the precision and accuracy of unit determination.
There is, therefore, a need for improved methods of assessing and quantifying the activity of an enzyme.
The problems discussed above may be solved by use of an internally calibrated electrochemical continuous enzyme assay (ICECEA). The ICECEA requires only a small amount of enzyme to quickly determine its activity with no need for enzyme-based external calibration or re-activation of electrode surface.
In an embodiment, the ICECEA method includes: placing a first composition in an electrochemical assay system, wherein the first composition comprises a substrate of an enzyme in a background electrolyte; adding a second composition to the first composition in the electrochemical assay system to create a first assay mixture, wherein the second composition comprises a reactant or product of an enzymatic reaction of the enzyme; measuring a current flowing through an electrode of the electrochemical assay system after the first assay mixture is formed; adding a third composition to the first assay mixture to create a second assay mixture, the third composition comprising the enzyme; measuring a current flowing through an electrode of the electrochemical assay system after the second assay mixture is formed over a predetermined time period; and determining the enzyme activity based on the change in current over time caused by the addition of the third composition. The background electrolyte may be a buffer solution (e.g., a phosphate buffer solution). The above describes a preferable way to conduct the ICECEA; however, in the alternative approach, the sequence of additions of a second composition and a third composition can be swapped.
The electrochemical assay system includes an electrochemical measuring device. The electrochemical measuring device includes working electrode, a reference electrode, and an auxiliary electrode, wherein the current flowing through the working electrode is measured. The working electrode may be a noble metal electrode, metal oxide electrode, an electrode made of a carbon allotrope, or a modified electrode. The auxiliary electrode may be a platinum wire. The reference electrode may be a Ag/AgCl/NaCl or any other reference electrode. The electrochemical assay system can also be made of only a working electrode and a reference electrode. Measuring the changes in current may be done by collecting an amperometric trace of the current.
Adding the second composition to the first composition in the electrochemical assay system includes: adding a first aliquot of the second composition to the first composition; measuring a current flowing through an electrode of the electrochemical assay system after the first aliquot is added; adding one or more additional aliquots of the second composition to the first aliquot/first composition mixture; measuring a current flowing through an electrode of the electrochemical assay system after each additional aliquot is added. Preferably, at least three aliquots of the second composition are added to the first composition before the enzyme (the third composition) is added to the mixture. Alternatively, the aliquots of the second composition are added to the first composition after the enzyme (the third composition) is added to the mixture. The enzymatic activity of the enzyme may be determined from the slope of a line created from measuring the current flowing through a working electrode of the electrochemical assay system after the second assay mixture is formed at predetermined intervals over a predetermined time period. An advantage of this method is that the addition of the second composition to the first composition and the addition of the third composition to the first assay mixture are performed in the same container using the same electrode.
Advantages of the present invention will become apparent to those skilled in the art with the benefit of the following detailed description of embodiments and upon reference to the accompanying drawings in which:
While the invention may be susceptible to various modifications and alternative forms, specific embodiments thereof are shown by way of example in the drawings and will herein be described in detail. The drawings may not be to scale. It should be understood, however, that the drawings and detailed description thereto are not intended to limit the invention to the particular form disclosed, but to the contrary, the intention is to cover all modifications, equivalents, and alternatives falling within the spirit and scope of the present invention as defined by the appended claims.
It is to be understood the present invention is not limited to particular devices or methods, which may, of course, vary. It is also to be understood that the terminology used herein is for the purpose of describing particular embodiments only, and is not intended to be limiting. As used in this specification and the appended claims, the singular forms “a”, “an”, and “the” include singular and plural referents unless the content clearly dictates otherwise. Furthermore, the word “may” is used throughout this application in a permissive sense (i.e., having the potential to, being able to), not in a mandatory sense (i.e., must). The term “include,” and derivations thereof, mean “including, but not limited to.” The term “coupled” means directly or indirectly connected.
Internally Calibrated Electrochemical Continuous Enzyme Assay (ICECEA), allows for the fast determination of absolute units of enzyme activity. By definition, the enzyme activity is expressed as the amount of enzyme substrate that is converted to a product per unit time. For practical reasons, the enzyme activity is reported in the international units (1 U=1 micromole min−1). The determination of enzyme activity units is based on measuring either the formation of a product or consumption of a reactant of enzymatic reaction (1) over time.
The ICECEA method measures the international activity units through the direct amperometric determination of an initial rate of reaction (1) in a single short experiment. This is feasible because of the unique integration of enzyme-less assay calibration with actual enzyme assay in one continuous experiment using the same electrode and solution. The unique feature of the new approach is that a reactant or a product of reaction (1), instead of an enzyme, is used to calibrate the assay. Calibration done in such a way does not interfere with the following enzyme assay and both can be performed in the same solution. This eliminates the need for transferring the working electrode between the calibration and assay solutions, which can affect the activity of electrode surface and lead to erroneous values for activity units. The ICECEA also eliminates the need for using enzymes, which are sometimes fairly expensive, to calibrate the assays.
The validity of enzyme assays was assured by (a) measuring the amperometric slope (initial reaction rate) only at a short reaction time, <60 s, (b) conducting an enzymatic reaction under the condition of zero order with respect to the enzyme's substrate, (c) using optimized pH and temperature, and (d) working within the linear range of a calibration plot for amperometrically monitored species. The accuracy of ICECEA was determined by calculating the relative error based on the known number of enzyme units that were added to a solution and enzyme units that were actually measured.
The ICECEA requires only three solutions to quantify the enzyme activity in the reaction 1:
The amperometric measurement is done by using any electrochemical measurement device with amperometric method and a conventional electrochemical cell with the working, reference, and counter electrodes immersed in a solution A. The working electrode is held at a potential E vs. the potential of the reference electrode. The potential E is adequate for either the oxidation or reduction of species present in a solution B. The experiment is performed by spiking one or more known aliquots of a solution B followed by one aliquot of a solution C into a stirred solution A and measuring the current flowing through the working electrode.
The ICECEA method can be used to quantitatively determine the enzyme activity of any enzymatic catalyzed reaction. The ICECEA applies directly to any enzyme that involves redox active reactants or products. It can also be coupled to other assays aimed at the determination of enzymatic activity of enzymes, which do not involve redox active species. Depending on the composition of solution B, the working electrode can be made of any electron-conducting carbon allotrope (e.g. glassy carbon, carbon nanotubes, graphite etc.) or noble metal (e.g. platinum, gold). In addition, the working electrode with a modified surface can be used to facilitate the oxidation or reduction of species added with a solution B. The time-dependent shape of the amperometric trace (
Specific applications of the ICECEA method include:
The ICECEA can be performed with the variety of electrodes (e.g. platinum, glassy carbon, carbon nanotubes, modified electrodes). The method can use different redox species (e.g. H2O2, uric acid, NADH) to monitor the progress of enzymatic reaction by following their generation or consumption in time. The ICECEA method can be applied to wide range of enzymatic systems by matching the electrode material with the redox properties of the reactants or products of enzymatic reactions. As the field of enzyme assays is progressing rapidly, the ICECEA has a potential to play an important role in its growth.
The following examples are included to demonstrate preferred embodiments of the invention. It should be appreciated by those of skill in the art that the techniques disclosed in the examples which follow represent techniques discovered by the inventor to function well in the practice of the invention, and thus can be considered to constitute preferred modes for its practice. However, those of skill in the art should, in light of the present disclosure, appreciate that many changes can be made in the specific embodiments which are disclosed and still obtain a like or similar result without departing from the spirit and scope of the invention.
For the proof-of-concept purposes, the direct ICECEA was studied with several redox enzymes including the alcohol dehydrogenase (ADH), lactate dehydrogenase (LDH), xanthine oxidase (XOx), glucose oxidase (GOx), glutamate dehydrogenase (GmDH), choline oxidase (ChOx), glucose dehydrogenase (GDH), malic dehydrogenase (MDH), and myeloperoxidase (MPOx. Their determination is important for a variety of reasons. The ADH is used as a sensitive biomarker of graft function after liver transplantation. The alleviated levels of LDH are linked to the myocardial infarction, meningitis, encephalitis, and acute pancreatitis. The XOx is a biomarker of oxidative stress and plays a role in tissue and vascular injuries including liver damage, inflammatory diseases, and chronic heart failure. Finally, the GOx is commonly used as a medical diagnostic reagent and component of glucose sensors for monitoring diabetes and fermentation processes. It is also used as a food preservative. These enzymes allowed testing the ICECEA at different electrodes (carbon nanotubes, glassy carbon, and platinum) by monitoring the enzyme kinetics via the electro-oxidation of different enzyme-related species (NADH, uric acid, and hydrogen peroxide). The selected enzymes also allowed researching different pre-assay calibration strategies using either the products or reactants of enzymatic reactions. The ICECEA was conducted under the same conditions of pH and temperature as those used in the standard optical assays of these enzymes in order to assess the merits of new method.
The activity of ADH was determined by measuring the initial rate of reaction (3) using three solutions: (A) 20.0 mL of 0.56 M ethanol and 7.50 mM NAD+ in pH 8.80 pyrophosphate buffer solution (0.050 M), (B) 1.0 mM NADH solution, (C) ADH solution (7.50 U mL−1). The ICECEA was performed at 25° C. with a glassy carbon electrode (E=0.40 V) that was coated by the thin film of carbon nanotubes dispersed in chitosan, which served as an inert immobilization matrix. The CNT were used because they facilitate the oxidation of NADH. In a typical experiment, after recording a baseline current, three 20-μL aliquots of solution B and one 10-μL aliquot of solution C were added in succession to the 20.0 mL of stirred solution A. This generated characteristic ICECEA amperometric traces (
The current steps in
Table 1 also shows a small relative error (−3.2%) between the average activity unit measured in three runs (3.62 U L−1) and the unit added (3.74 U L−1), which demonstrates a good accuracy of the ICECEA. Apparently, the addition of a small amount of NADH (3 μM total) to the solution during the pre-assay calibration phase did not affect notably the rate of the enzymatic reaction (3). This indicates that, under such conditions, both the pre-assay calibration with NADH and assaying of ADH can be conducted in succession in one solution and at the same electrode.
An optical assay was conducted following the procedures described in a commercial enzyme kits for alcohol dehydrogenase. The optical assay of alcohol dehydrogenase (Table 2) was much more elaborate than the ICECEA and required seven different solutions and multiple liquid-handling steps.
The assay of LDH was based on the reaction (4) and utilized three solutions: (A) 20.0 mL of 2.30 mM sodium pyruvate in pH 7.50 phosphate buffer solution (0.10 M), (B) 50.0 mM NADH solution, and (C) LDH solution (20.0 U mL−1). The assay was performed at 37° C. with a glassy carbon electrode (E=0.40 V) that was modified by a thin film of carbon nanotubes in chitosan. The stirred solution A was spiked with three 10-μL aliquots of solution B and one 10-μL aliquot of solution C.
The current steps in
The important distinction from the earlier case of ADH is that in the LDH case the pre-assay calibration plays a dual role. It provides the NADH-based assay calibration and introduces a necessary reactant (NADH) for the subsequent enzyme assay. Therefore, the calibration is done with a higher concentration of NADH (75 μM total). This assures that there is enough reactant for a reaction (4) and facilitates the recording of NADH consumption rate (descending I-t segment in
An optical assay was conducted following the procedures described in a commercial enzyme kits for lactate dehydrogenase. The optical assay of lactate dehydrogenase (Table 4) was more elaborate and required five different solutions and much more time compared to the ICECEA.
The activity of XOx was determined by measuring the initial rate of reaction (5) using three solutions: (A) 20.0 mL of 0.50 mM xanthine in pH 7.50 phosphate buffer solution (0.10 M), (B) 2.50 mM solution of uric acid, and (C) XOx solution (8.06 U mL−1). The enzyme XOx is different from the previous two enzymes because its reaction involves three species (O2, uric acid, and H2O2) that can be reduced or oxidized at conventional electrodes. In principle, any of them could be used to assay the XOx. In order to simplify the measurement and monitor only one type of species, a glassy carbon electrode was selected to monitor the oxidation of uric acid that is produced in reaction (5). Out of the three species, uric acid is the only species that is oxidized at such electrode at 0.35 V. The assay was performed at 25° C. The stirred solution A was spiked with three 20-μL aliquots of solution B and one 20-μL aliquot of solution C.
The current steps in
The good precision and accuracy was achieved regardless of much larger standard deviation for the slopes CS and AS (8.6% and 11%, respectively). Apparently, the differences in slopes between different runs did not impact the quality of unit determination. The reason for this was that the activity unit was calculated based on an experiment that did not require transferring the working electrode between the separate calibration and assay solutions. This provided internal consistency between the calibration and assay phases of an individual run. This is an inherent advantage of ICECEA method, which provides reliable results without the need for re-polishing of working electrode.
The relative error between the average activity unit measured in three runs (8.04) and the unit added (8.03) to the solution was only 0.12% (Table 5) illustrating that the pre-assay calibration with uric acid and assaying of XOx did not interfere with each other and could be conducted in the same solution.
An optical assay was conducted following the procedures described in a commercial enzyme kits for xanthine oxidase. The optical assay of xanthine oxidase (Table 6) was similar to the ICECEA in that it required the same number of solutions and comparable amount of time to determine the enzyme activity.
The assay of enzyme GOx was based on reaction (6) and three solutions: (A) 20.0 mL of 0.10 M β-D-Glucose in pH 5.1 acetate buffer solution (0.10 M), (B) 0.0020 M solution of H2O2, and (C) GOx solution (40 U mL−1). The assay was performed at 35° C. by using a platinum working electrode that was held at E=0.60 V. The solution A was spiked with three 20-μL aliquots of solution B and one 10-μL aliquot of solution C.
The analysis of I-t traces (
An optical assay was conducted following the procedures described in a commercial enzyme kits for glucose oxidase. The optical assay of glucose oxidase (Table 8) was much more time consuming than the ICECEA and required an auxiliary enzyme peroxidase, toxic dye o-dianisidine, and four other solutions to determine the enzyme activity.
The analysis of I-t traces (
The analysis of I-t traces (
In the alternative approach to the determination of MPOx, the reaction with thiocyanate was used.
The ICECEA based on reactions 15a and 16 yielded the same current-time traces as those shown in
The initial interference studies were performed with the enzyme GOx and ascorbic acid. The latter is notorious for interfering with electrochemical assays because it can be easily oxidized at working electrodes. The addition of physiological concentration (0.10 mM) of ascorbic acid to the enzyme solution C did not change the ICECEA traces (not shown). This indicated that the ascorbic acid did not interfere with the electrochemical assaying of GOx under such conditions. Apparently, the high dilution factor
of the solution C during the assay lowered the concentration of ascorbic acid to a level (50 nM) that was not detectable at a platinum electrode.
The situation changed when the dilution factor was decreased from 2000 to 20
resulting in a 15 μM ascorbic acid solution. In the presence of 15 μM ascorbic acid in the assay mixture (
The second part of interference studies was conducted with acetaminophen, which is also known for interfering with electrochemical assays. In the presence of acetaminophen, the angled I-t segment of ICECEA trace shifted upward (
The sensitivity of I-t slope to the composition of solution (
The capacity of ICECEA to reliably quantify enzyme activity depends on the limit of detection (LOD) for the molecules that are electrochemically monitored during the assay (NADH, uric acid, H2O2) and the linear range of their calibration plots. For the purpose of this analysis, the LOD is defined as the concentration that generates the current ILOD that is three times larger than the peak-to-peak noise of baseline current. The low limit of enzyme detection (LLED) and high limit of enzyme detection (HLED) were determined under the condition that (1) the enzyme was always a limiting reagent, and (2) the current measured during the assay was always within the linear range of a calibration plot for the monitored species. The LLED values were calculated by using the equation 2 and AS=ILOD/2 min, which yielded 0.090, 0.024, 0.0031, and 0.036 U L−1 (or 2.1, 0.12, 89, and 2.0 pM) for the ADH, LDH, XOx, and GOx, respectively. These LLED values are competitive and sometimes better by orders of magnitude than those previously reported for these enzymes.
As the enzyme concentration in a solution increased the segments 1 and 2 became progressively less linear. Therefore, the HLED was determined based on the slope AS that was calculated by selecting a shorter (<30 s) linear portion of segment I, which had correlation coefficient R2>0.99 (>0.97 for segment II (
Coupled ICECEA. Many enzymatic reactions are difficult to assay directly by amperometry because their products or reactants are electrochemically inactive. Therefore, the coupled ICECEA will be used based on the set of general enzymatic reactions 17 and 18
in which the rate determining reaction 17 is coupled with reaction 18 that is easier detectable at a proper working electrode. In the coupled assays, the product of reaction 17 (product 1) will be the substrate of reaction 18. The coupled ICECEA assays control the direction of enzymatic reactions in order to rapidly extract the information about the enzyme activity under linear conditions.
The reaction 18 can be also conducted in electrochemical biosensors as the alternative to conducting it in the assay solutions. To this end, the enzyme 2 is immobilized in a thin polymeric film (e.g. chitosan, Nafion etc.) on the surface of electrode made of an electronic conductor or in electronically conducting pastes. Such biosensors are convenient alternatives, lowering the cost of ICECEA analysis by requiring the use of only small quantities of expensive enzymes and allowing their multiple reuse.
This assay may be performed by treating a stirred solution of alanine, ketoglutaric acid, pyridoxal phosphate (PLP), and PyOX in an appropriate buffer (Solution A). The calibration I-t steps are performed by additions of aliquots of H2O2 (Solution B). The angled I-t segment is recorded after addition of 100.0 U L−1 ALT (Solution C). Addition of ALT catalyzes the reaction of alanine with ketoglutaric acid to form pyruvate, which serves as a substrate for reaction 24. The rate of increase of H2O2 is directly related to the amount of pyruvate produced in the ALT catalyzed reaction. Thus the change in concentration of H2O2 can be directly related to the activity of ALT.
This assay may be performed by treating a stirred solution of Phospho(enol)pyruvate, ADP, MgSO4, and PyOx in an appropriate buffer (Solution A). The calibration I-t steps are performed by additions of aliquots of H2O2 (Solution B). The angled I-t segment is recorded after addition of 100.0 U L−1 PyK (Solution C). Addition of PyK catalyzes the reaction of phospho(enol)pyruvate with ADP to form pyruvate, which serves as a substrate for reaction 28. The rate of increase of H2O2 is directly related to the amount of pyruvate produced in the PyK catalyzed reaction. Thus the change in concentration of H2O2 can be directly related to the activity of PyK.
Based on the foregoing data, numerous other enzyme systems can be analyzed via ICECEA including:
1. Class EC 2 (Transferases)
2. Class EC 3 (Hydrolases)
3. Class EC 4 (Lyases)
4. Class EC 5 (Isomerases)
5. Class EC 6 (Ligases)
The system uses three solutions: (A) background electrolyte solution containing enzyme's substrate and other necessary reagents, (B) calibration solution containing the redox active component of enzymatic reaction dissolved in the solution A, and (C) background electrolyte solution containing assayed enzyme. The ICECEA-based system includes a flow injection device based on the miniature fluidics in which a solution A is forced to flow through a narrow channel. The system is composed of three parts (
A reaction/mixing loop is coupled to the flow channel downstream from the injection loop. In the reaction/mixing loop the solutions from the injection loop are mixed with the baseline composition flowing through the flow channel. The reactants and enzymes are mixed in the reaction/mixing loop allowing the enzymatic reaction to proceed for a well-defined time that is dependent on the length/diameter of the loop and flow rate. The reaction/mixing loop can be isolated from the flow channel when not needed. For example, when the calibration Solution B is added to the flow channel, there is no need to delay the flow of the mixed solution to the electrochemical measurement device. When the Solution C is added to Solution A, in some embodiments, a delay may be needed to allow the enzymatic reaction to take place. Thus, the reaction/mixing loop can be switched into the flow channel path, such that the combined Solution C and Solution A is delayed from reaching the electrochemical measurement system.
An electrochemical measurement device is positioned downstream from the reaction/mixing loop. The electrochemical measurement device includes two (or three) electrodes that are poised at a selected potential difference AE and serve to detect the formation or consumption of redox species during the enzymatic reaction.
The system operates as follows. The background Solution A flows through the flow channel. Aliquot of calibration Solution B is injected into the system, via the injection loop, and travels to the electrodes where it generates the calibration current peak (the blue peak in the part
The internally calibrated electrochemical continuous enzyme assay (ICECEA) is a simple, reliable, and cost-effective method for the rapid determination of catalytic activity of a variety of enzymes. The new method does not use enzymes, sometimes fairly expensive, to calibrate the assay. It quantifies the assay via the enzyme-free calibration in the assay solution. This eliminates the need for transferring the working electrode between the calibration and assay solutions, which can affect the activity of electrode surface and lead to erroneous results. The other advantages include no need for extra reagents such as auxiliary enzymes or toxic chromogenic agents. It also does not require the re-polishing of electrodes between assays.
The ICECEA is amenable to automation and miniaturization and is well suited for the applications in bioanalytical and biotechnology fields including the fast analysis of commercial batches of enzymes, quantification of enzyme biomarkers for various diseases, optimization of assays for newly discovered enzymes, and quick corroboration of high-throughput enzyme assays. The combination of time-independent calibration signal with a time-dependent assay signal in one amperometric trace greatly improves the selectivity of ICECEA. This feature can also be explored in the rapid quantitative screening for potential interfering species, enzyme inhibitors, and enzyme substrates.
In this patent, certain U.S. patents, U.S. patent applications, and other materials (e.g., articles) have been incorporated by reference. The text of such U.S. patents, U.S. patent applications, and other materials is, however, only incorporated by reference to the extent that no conflict exists between such text and the other statements and drawings set forth herein. In the event of such conflict, then any such conflicting text in such incorporated by reference U.S. patents, U.S. patent applications, and other materials is specifically not incorporated by reference in this patent.
Further modifications and alternative embodiments of various aspects of the invention will be apparent to those skilled in the art in view of this description. Accordingly, this description is to be construed as illustrative only and is for the purpose of teaching those skilled in the art the general manner of carrying out the invention. It is to be understood that the forms of the invention shown and described herein are to be taken as examples of embodiments. Elements and materials may be substituted for those illustrated and described herein, parts and processes may be reversed, and certain features of the invention may be utilized independently, all as would be apparent to one skilled in the art after having the benefit of this description of the invention. Changes may be made in the elements described herein without departing from the spirit and scope of the invention as described in the following claims.
Filing Document | Filing Date | Country | Kind |
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PCT/US14/32713 | 4/2/2014 | WO | 00 |
Number | Date | Country | |
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61807571 | Apr 2013 | US |