Patent Application
20230013542
The present invention relates to a novel fluorescent compounds, synthesis thereof, and methods of using same. The present invention discloses novel 3,6-di(azetidin-1-yl)-10-substituted-acridin-10-ium salts, a process of the manufacture and the use of the disclosed compounds for detection of cardiolipin.
Mitochondria are vital organelles that are involved in a large array of metabolic and bioenergetic processes needed for cell survival. Phospholipids are the main building blocks of all the membranes, and every organelle's membrane bears its unique phospholipid composition.
Cardiolipin (CL) is a unique phospholipid which is localized and synthesized in the inner mitochondrial membrane (IMM) where it constitutes approximately 20% of total IMM phospholipids. It is now widely accepted that CL plays an important role in mitochondrial membrane morphology, stability, dynamics and is required for optimal activity of several mitochondrial membrane proteins (e.g. electron transport chain (ETC) complexes, cytochrome C). [1] Cardiolipin peroxidation due to increased reactive oxygen species (ROS) production leads to decreased activity of ETC complex I, III and IV and promotes cytochrome C release from mitochondria which in turn induces apoptosis by caspase cascade activation. [2]
In addition to its important role in the apoptosis pathway, the level of CL is also of clinical significance. The depletion of CL is a major indicator of aging, Barth syndrome, and a number of diseases associated with mitochondrial respiratory function such as heart ischemia, cardiac failure, diabetes and neurodegenerative disorders. [3-6] Therefore, it is highly important to develop an effective method for the detection and quantification of CL.
Besides mitochondrial membrane, CL is the characteristic lipid of bacterial membranes with CL content varying between different bacterial strain. [7] Owing to its certain localization (either mitochondrial inner membrane or bacterial membrane) and peculiar functions, cardiolipin has driven scientists' attention as a target molecule for mitochondria function protecting drugs as well as a target for antibacterial agents. [8,9]
In addition, some drugs side effects can be explained by their interaction with CL, for example, vancomycin's nephrotoxicity or cardiotoxicity of chemotherapy drugs. [10,11]
In the early 1980s a fluorescent dye, 10-N-nonyl acridine orange, was introduced for selective CL detection and mitochondria staining. [12]
In the presence of CL the green fluorescence of NAO is decreased allowing to quantitively analyze CL content ranging from 0.2 to 10 μM. [13] However, NAO suffers from poor solubility in physiological media, low PLQY (photoluminescence quantum yield, Φ) as well as small intensity differences between CL-bound and unbound states.
Therefore, an improvement in solubility in physiological media, increase of PLQY, fluorescence brightness and photostability are among the main tasks in development of new effective fluorescent dyes for cell organelle imaging.
We have surprisingly determined that certain 3,6-di(azetidin-1-yl)-10-substituted-acridin-10-ium salts exhibit superior PLQY than NAO (nonyl acridine orange) and therefore may act as efficient fluorescent dyes for the detection of cardiolipin. These substances may be administered in the form of a composition, wherein they are present together with one or more acceptable diluents, carriers, or excipients.
It is an object of the present invention to provide novel fluorescent compounds, useful for detection of cardiolipin and methods for manufacturing of disclosed compounds.
We disclosed compounds selected from those of Formula I
R represents C1-15 alkyl; C1-3 deuterated alkyl, C1-6-alkylene-silyl(C1-3-alkyl)3
X− represents chloride, bromide, iodide;
As used herein, the term “alkyl” refers to a straight or branched hydrocarbon chain, containing the indicated number of carbon atoms. For example, C1-C6 alkyl indicates that the alkyl group may have from 1 to 6 (inclusive) carbon atoms. The term “alkylene” refers to a divalent alkyl, e.g., —CH2—, —CH2CH2—, —CH2CH2CH2—, —CH2CH(CH3)CH2—. An alkyl or alkylene may be optionally substituted. Alkyl group may contain deuterium.
Specific compounds of Formula I within the present invention include but are not limited to:
Searching for fluorescent compounds to be used for the determination of cardiolipin we unexpectedly discovered that 3,6-di(azetidin-1-yl)-10-substituted-acridin-10-ium salts of Formula I exhibit superior PLQY compared to NAO. Our finding is astonishing, because it is well known, that NAO is widely used dye for the detection of cardiolipin. We discovered that high quantum yield is typical for a number of compounds in series of 3,6-di(azetidin-1-yl)-10-substituted-acridin-10-ium salts, especially if there is silyl group present in alkyl chain, CH3 or CD3 in position 10 of this scaffold.
Scheme 1 describes the preparation of compounds of Formula I of the present invention. All of the final compounds of the present invention can be prepared by procedures described in these charts or by procedures analogous thereto, which procedures would be well known to one of ordinary skill in organic chemistry. All of the variables used in the scheme are as defined below or as in the claims.
Quaternization of acridines is a challenging task. All trusted reports in literature confirm requiring of elevated temperature, excess of alkylating agent and prolonged heating. It results in the formation of difficult separable crude mixtures due to diamino acridines are sensitive to prolonged heating. In our hands quaternization of 1 proceeded even slower than the same reaction with acridine orange. Surprisingly, we have found that the treatment of 1 with alkyl halides in the presence of inorganic salts (e.g. phosphates, carbonates) led to the fast completion of the reaction. Notably, reaction time was reduced from 2-3 days to less than 1 hour. Moreover, much smaller number of by-products has been detected making isolation of I easier.
Preparation of the disclosed compounds of the present invention is described in the following examples, which are intended as an illustration of and not a limitation upon the scope of the invention.
To a preheated suspension of 1 (25 mg, 0.086 mmol) in 4 ml of toluene at 100° C. potassium phosphate (42 mg, 0.2 mmol) was added followed by the addition of iodomethane (0.5 ml). Resulting mixture was stirred under reflux for 40 min. Then reaction mixture was filtered through aluminum oxide pad and washed with 30 ml of CH2Cl2/CH3OH (50:1) mixture. Volatiles were evaporated to yield 28 mg of I-1 as red solid (75%).
1H NMR (400 MHz, Methanol-d4/CDCl3) δ 8.34 (s, 1H), 7.67 (d, 2H), 6.59 (dd, 2H), 6.17 (d, 2H), 4.20 (t, 8H), 3.98 (s, 3H), 2.55-2.44 (m, 4H). 13C NMR (101 MHz, Methanol-d4/CDCl3) δ 155.3, 143.7, 143.0, 133.3, 117.1, 112.5, 90.7, 51.6, 36.3, 16.0. HRMS (ESI): calcd. for C20H22N3+ [M]+ calcd. 304.1808, found 304.1823.
To a preheated suspension of 1 (25 mg, 0.086 mmol) in 4 ml of toluene at 100° C. potassium phosphate (42 mg, 0.2 mmol) was added followed by the addition of iodomethane-d3 (0.3 ml). Resulting mixture was stirred under reflux for 15 min. Then reaction mixture was filtered through aluminum oxide pad and washed with 30 ml of CH2Cl2/CH3OH (50:1) mixture. Volatiles were evaporated to yield 23 mg of 1-2 as red solid (62%).
1H NMR (400 MHz, CDCl3) δ 8.31 (s, 1H), 7.63 (d, 2H), 6.57 (dd, 2H), 6.11 (dd, 2H), 4.23-4.10 (m, 8H), 2.55-2.44 (m, 4H). HRMS (ESI): calcd. for C20H19D3N3+ [M]+ calcd. 307.2002, found 307.2005.
To a preheated suspension of 1 (25 mg, 0.086 mmol) in 4 ml of dichlorobenzene at 170° C. potassium phosphate (42 mg, 0.2 mmol) was added followed by the addition of 1-iodononane (0.5 ml). Resulting mixture was stirred under reflux for 45 min. Then reaction mixture was evaporated, and residue was purified by flash chromatography on aluminum oxide using mixture of CH2Cl2/C2H5OH (10:1) as eluent to yield 36 mg of 1-3 (76%).
1H NMR (400 MHz, Chloroform-d) δ 8.58 (s, 1H), 7.83 (d, 2H), 6.68 (dd, 2H), 6.17 (d, 2H), 4.55 (t, 2H), 4.28 (t, 8H), 2.64-2.56 (m, 4H), 1.94-1.90 (m, 2H), 1.62-1.55 (m, 2H), 1.38-1.16 (m, 10H), 0.85 (t, 3H). HRMS (ESI): calcd. for C28H38N3+ [M]+ calcd. 416.3060, found 416.3058.
To a preheated suspension of 1 (25 mg, 0.086 mmol) in 4 ml of dichlorobenzene at 170° C. potassium phosphate (42 mg, 0.2 mmol) was added followed by the addition of 1-iodododecane (0.5 ml). Resulting mixture was stirred at 170° C. for 10 min. Then reaction mixture was filtered through aluminum oxide pad to yield 27 mg of I-4 (54%).
1H NMR (400 MHz, Acetonitrile-d3) δ 8.43 (s, 1H), 7.72 (d, 2H), 6.68 (dd, 2H), 6.10 (d, 2H), 4.44-4.30 (m, 2H), 4.21 (t, 8H), 2.58-2.42 (m, 4H), 1.84-1.78 (m, 2H), 1.60-1.52 (m, 2H), 1.48-1.39 (m, 2H), 1.37-1.24 (m, 14H), 0.92-0.86 (m, 3H). 13C NMR (101 MHz, Acetonitrile-d3) δ 156.3, 144.1, 143.5, 134.2, 117.9, 113.3, 91.1, 52.4, 48.3, 32.6, 30.4, 30.4, 30.3, 30.2, 30.1, 29.9, 27.3, 26.4, 23.4, 16.7, 14.4. HRMS (ESI): calcd. for C31H44N3+ [M]+ calcd. 458.3535, found 458.3535.
To a preheated suspension of 1 (25 mg, 0.086 mmol) in 4 ml of dichlorobenzene at 170° C. potassium phosphate (42 mg, 0.2 mmol) was added followed by the addition of 3-iodopropyl trimethylsilane (0.2 ml). Resulting mixture was stirred under reflux for 30 min. Then reaction mixture was evaporated, and residue was purified by flash chromatography on aluminum oxide using mixture of CH2Cl2/C2H5OH (10:1) as eluent to yield 31 mg of 1-5 (67%).
1H NMR (400 MHz, CDCl3) δ 8.71 (s, 1H), 7.91 (d, 2H), 6.67 (dd, 2H), 6.22 (d, 2H), 4.70-4.56 (m, 2H), 4.29 (t, 8H), 2.62-2.55 (m, 4H), 1.99-1.74 (m, 2H), 0.91-0.73 (m, 2H), 0.03 (s, 9H). 13C NMR (101 MHz, CDCl3) δ 155.2, 143.8, 142.6, 133.9, 117.3, 112.3, 90.4, 51.5, 50.8, 20.8, 16.1, 13.9, −1.7. HRMS (ESI): calcd. for C25H34N3+ [M]+ calcd. 404.2517, found 404.2523.
Photo-physical properties of I-1-I-5 was measured in aqueous HEPES [4-(2-hydroxyethyl)piperazine-1-ethanesulfonic acid] buffer solution (20 mM, pH 7.4); NAO bromide was used as reference compound. Similar to NAO derivatives I-1-I-5 has absorption maxima at 494-498 nm, and emission maxima at 528-529 nm (Table 1). However, surprisingly, the introduction of azetidinyl moieties instead of dimethylamino groups in NAO led to increase of D from 15.5% to 47.9% (I-3). Moreover, the trimethylsilylpropyl substituent in position 10 improved PLQY up to 60.7% (I-5). Notably, 10-methyl (I-1) and 10-methyl-d3 (I-2) exhibit similar value of PLQY, 59.9% and 61.5%, correspondingly. The introduction of longer alkyl chains such as nonyl and dodecyl led to PLQY decrease.
Mitochondrial membrane consists of 4 general phospholipids: phosphatidylcholine (PC), phosphatidylethanolamine (PE) and phosphatidylinositol (PI), and unique negatively charged phospholipid-cardiolipin (CL). I-5 interacts with CL/DOPC liposomes (3:1), this interaction can be observed as a fluorescence intensity drop from 65800 a.u. to 6600 a.u., similarly to NAO (from 13300 a.u. to 1260 a.u.).
I-5 is selective towards CL, since fluorescence intensity does not significantly decrease in the presence of DOPC liposomes without cardiolipin (7.7% drop), and I-5/CL optimal molar ratio was determined to be 2:1. Besides, NAO fluorescence intensity loss during interaction of DOPC was detected at 5.6% level. Notably, NAO fluorescence is not stable during experiments. It dropped by 15.5% in 30 minutes, however, fluorescence intensity of I-5 remaining the same.
I-5 was titrated with CL in 0.05-8 μM range and trustful linear regression curve (R2=0.9944) was obtained (
Therefore, we claim water-soluble acridinium derivatives with improved fluorescence characteristics for selective CL detection.
Liposomes preparation. Vesicles were prepared by classic thin film method. Desired volume of stock solutions of DOPC (25 mg/ml, CHCl3) and CL (5 mg/ml, EtOH) was completely evaporated on a vacuum line, and the lipid films were re-suspended in HEPES buffer (20 mM, pH 7.4) to acquire 100:300 μM CL/DOPC or 400 μM DOPC liposome 1st stock solutions. Obtained large multilamellar liposomes were sonicated in a bath-type sonicator at room temperature for 30 min following by extrusion through a 100 nm polycarbonate filter for 21 times. The quality of the resulting small unilamellar vesicles was monitored by dynamic light scattering (DLS) technique. These stock solutions were diluted 5-fold to acquire 2nd stock solutions that were used in the fluorometric experiments.
| Number | Date | Country | Kind |
|---|---|---|---|
| P-19-64 | Nov 2019 | LV | national |
| Filing Document | Filing Date | Country | Kind |
|---|---|---|---|
| PCT/IB2020/058457 | 9/11/2020 | WO |
